Citrus Sinensis ID: 029764

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHcccEEEEEccHHcHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHccccccEEEEEccHHHHHHHHHHcccccccccEEEEEccccccHHHHHHHHccccccEEEEEcccccccEEcccccccccccccHHHHHHHHHHHHHHccccEEEEEEEccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHccHHHEEEccccHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHccccccEEEccccHHHHHHHHHHcccccccEEEEEEEcccHcHHHHHHHHHHHHccccEEEEEcccccccEcccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHcc
Coil and Loop (DISEMBL)
MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTaltipedgqitaidvnretyeiGLPIIKKAGVDHKINFIESEALSVLDQLLKYsenegsfdyafvdadkdnyCNYHERLMKLLKVGGiavydntlwggtvavpeeqvpdhfrgsSRQAILDLNrsladdprvqlSHVALGDGITICRRIF
Flexible Loop (DISEMBL)
MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSladdprvqlshvalgdgiticrrif
Low Complexity Region (SEG)
MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF
Disordered region (IsUnstruct)
**********LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQV**********AILDLNRSLADDPRVQLSHVALGDGITICRR**
Disordered Region (DISOPRED)
MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF
Disordered Region (DISEMBL)
MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF
Disordered Region (DISPRO)
*MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	188	2.2.26 [Sep-21-2011]
Q9C5D7	232	Probable caffeoyl-CoA O-m	yes	no	0.989	0.801	0.695	9e-74
Q43161	241	Caffeoyl-CoA O-methyltran	N/A	no	0.994	0.775	0.590	2e-63
Q40313	247	Caffeoyl-CoA O-methyltran	N/A	no	0.994	0.757	0.588	6e-63
Q43095	247	Caffeoyl-CoA O-methyltran	N/A	no	0.994	0.757	0.582	4e-61
O65162	254	Caffeoyl-CoA O-methyltran	N/A	no	0.994	0.736	0.566	4e-61
O65862	247	Caffeoyl-CoA O-methyltran	yes	no	0.994	0.757	0.582	4e-61
Q9C9W3	232	Putative caffeoyl-CoA O-m	no	no	0.968	0.784	0.586	6e-61
O04899	240	Caffeoyl-CoA O-methyltran	N/A	no	0.994	0.779	0.577	7e-61
O65922	247	Caffeoyl-CoA O-methyltran	no	no	0.994	0.757	0.566	1e-60
O49499	259	Caffeoyl-CoA O-methyltran	no	no	0.994	0.722	0.572	2e-60

>sp|Q9C5D7|CAMT3_ARATH Probable caffeoyl-CoA O-methyltransferase At4g26220 OS=Arabidopsis thaliana GN=At4g26220 PE=2 SV=1

 Score =  275 bits (704), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 130/187 (69%), Positives = 158/187 (84%), Gaps = 1/187 (0%)

Query: 2   MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 61
           M TAPDAGQLM MLL LVNA+KTIE+GVFTGYSLLLTALT+PEDG++ AID+NR++YEIG
Sbjct: 47  MATAPDAGQLMGMLLNLVNARKTIEVGVFTGYSLLLTALTLPEDGKVIAIDMNRDSYEIG 106

Query: 62  LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 121
           LP+IKKAGV+HKI+F ESEAL  LD+LL    NEG FD+AFVDADK NY NYHERL++L+
Sbjct: 107 LPVIKKAGVEHKIDFKESEALPALDELLNNKVNEGGFDFAFVDADKLNYWNYHERLIRLI 166

Query: 122 KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGI 181
           KVGGI VYDNTLWGG+VA P+   P+ +R   ++A L+LN+ L+ D RVQ+S  ALGDGI
Sbjct: 167 KVGGIIVYDNTLWGGSVAEPDSSTPE-WRIEVKKATLELNKKLSADQRVQISQAALGDGI 225

Query: 182 TICRRIF 188
           TICRR++
Sbjct: 226 TICRRLY 232

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 0EC: 4

>sp|Q43161|CAMT_STELP Caffeoyl-CoA O-methyltransferase OS=Stellaria longipes PE=2 SV=1

 Score =  241 bits (615), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 111/188 (59%), Positives = 149/188 (79%), Gaps = 1/188 (0%)

Query: 1   MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI 60
            MGT+P AGQL++ +L+ V  KKTIE+GVFTGYSLL TAL+IP+DG+ITA+D++RE Y +
Sbjct: 55  FMGTSPLAGQLLSFMLKTVKPKKTIEVGVFTGYSLLATALSIPDDGKITAVDIDREAYNV 114

Query: 61  GLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL 120
           GL +IKKAGV+ KI+FI S+A+++LD LL     +GS+D+AFVDADK NY NYHERL++L
Sbjct: 115 GLALIKKAGVESKISFIVSDAMTLLDDLLADGRYQGSYDFAFVDADKTNYVNYHERLIEL 174

Query: 121 LKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG 180
           +KVGGI  YDNTLWGGTVA+PE +VPD F  ++   +  LN  L  D R+ ++H+ +GDG
Sbjct: 175 VKVGGIIAYDNTLWGGTVALPESEVPD-FMKNNWVCVTKLNEILGSDARIDIAHLPVGDG 233

Query: 181 ITICRRIF 188
           IT CRR++
Sbjct: 234 ITFCRRVY 241

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Stellaria longipes (taxid: 19744)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q40313|CAMT_MEDSA Caffeoyl-CoA O-methyltransferase OS=Medicago sativa GN=CCOMT PE=1 SV=1

 Score =  239 bits (611), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 110/187 (58%), Positives = 147/187 (78%)

Query: 1   MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI 60
           +M T+ D GQ ++MLL+L+NAK T+EIGV+TGYSLL TAL IPEDG+I A+D+N+E YE+
Sbjct: 60  IMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYEL 119

Query: 61  GLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL 120
           GLP+IKKAGVDHKI+F E  AL VLD+++K  +N GS+D+ FVDADKDNY NYH+RL+ L
Sbjct: 120 GLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDL 179

Query: 121 LKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG 180
           +KVGG+  YDNTLW G+V  P +     +    R  +L+LN++LA DPR+++  + +GDG
Sbjct: 180 VKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDG 239

Query: 181 ITICRRI 187
           ITICRRI
Sbjct: 240 ITICRRI 246

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Medicago sativa (taxid: 3879)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q43095|CAMT_POPTM Caffeoyl-CoA O-methyltransferase OS=Populus tremuloides PE=2 SV=1

 Score =  234 bits (596), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 109/187 (58%), Positives = 145/187 (77%)

Query: 1   MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI 60
           +M T+ D GQ + MLL+LVNAK T+EIGV+TGYSLL TAL IPEDG+I A+D+NRE YE+
Sbjct: 60  IMTTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINRENYEL 119

Query: 61  GLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL 120
           GLP+I+KAGV HKI+F E  AL VLDQ+++  +  GSFD+ FVDADKDNY NYH+RL++L
Sbjct: 120 GLPVIQKAGVAHKIDFKEGPALPVLDQMIEDGKYHGSFDFIFVDADKDNYINYHKRLIEL 179

Query: 121 LKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG 180
           +KVGG+  YDNTLW G+V  P +     +    R  +L+LN++LA DPR+++  + +GDG
Sbjct: 180 VKVGGLIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDG 239

Query: 181 ITICRRI 187
           IT+CRRI
Sbjct: 240 ITLCRRI 246

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Populus tremuloides (taxid: 3693)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O65162|CAMT_MESCR Caffeoyl-CoA O-methyltransferase OS=Mesembryanthemum crystallinum PE=2 SV=1

 Score =  234 bits (596), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 106/187 (56%), Positives = 146/187 (78%)

Query: 1   MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI 60
           +M T+ D GQ + MLL+L+NAK TIEIGV+TGYSLL +AL +P+DG+I A+D+NRE YE+
Sbjct: 67  LMTTSADEGQFLNMLLKLINAKNTIEIGVYTGYSLLASALALPDDGKILAMDINRENYEL 126

Query: 61  GLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL 120
           GLP+I+KAGV HKI+F E  AL VLD L++ ++N GSFD+AFVDADKDNY NYH+RL+ L
Sbjct: 127 GLPVIQKAGVAHKIDFREGPALPVLDLLIEDAKNHGSFDFAFVDADKDNYGNYHKRLIDL 186

Query: 121 LKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG 180
           +K+GG+  YDNTLW G+VA P +     +    R  +++ N+++A DPRV++  + +GDG
Sbjct: 187 VKIGGVIGYDNTLWNGSVAAPADAPMRKYVRYYRDFVMEFNKAIAADPRVEICQLPVGDG 246

Query: 181 ITICRRI 187
           IT+CRRI
Sbjct: 247 ITLCRRI 253

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Mesembryanthemum crystallinum (taxid: 3544)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O65862|CAMT1_POPTR Caffeoyl-CoA O-methyltransferase 1 OS=Populus trichocarpa GN=CCOAOMT1 PE=2 SV=1

 Score =  233 bits (595), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 109/187 (58%), Positives = 145/187 (77%)

Query: 1   MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI 60
           +M T+ D GQ + MLL+LVNAK T+EIGV+TGYSLL TAL IPEDG+I A+D+NRE YE+
Sbjct: 60  IMTTSADEGQFLNMLLKLVNAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINRENYEL 119

Query: 61  GLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL 120
           GLP+I+KAGV HKI+F E  AL VLDQ+++  +  GSFD+ FVDADKDNY NYH+RL++L
Sbjct: 120 GLPVIQKAGVAHKIDFKEGPALPVLDQMIEDGKCHGSFDFIFVDADKDNYINYHKRLIEL 179

Query: 121 LKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG 180
           +KVGG+  YDNTLW G+V  P +     +    R  +L+LN++LA DPR+++  + +GDG
Sbjct: 180 VKVGGLIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDG 239

Query: 181 ITICRRI 187
           IT+CRRI
Sbjct: 240 ITLCRRI 246

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Populus trichocarpa (taxid: 3694)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q9C9W3|CAMT1_ARATH Putative caffeoyl-CoA O-methyltransferase At1g67980 OS=Arabidopsis thaliana GN=At1g67980 PE=2 SV=1

 Score =  233 bits (594), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 109/186 (58%), Positives = 144/186 (77%), Gaps = 4/186 (2%)

Query: 2   MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 61
           M    D G  ++ML++++NAK TIEIGVFTGYSLL TAL +PEDG+ITAID+++E YE+G
Sbjct: 50  MEVPVDEGHFLSMLVKIMNAKNTIEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVG 109

Query: 62  LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 121
           L  IKKAGVDHKINFI S+ L  LDQL+    ++  FD+AF DADK +Y N+HERL+KL+
Sbjct: 110 LEFIKKAGVDHKINFIHSDGLKALDQLVN---DKCEFDFAFADADKSSYVNFHERLLKLV 166

Query: 122 KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGI 181
           KVGGI  +DNTLW G VA  E+ VP+H R   R A+++ N+ LA DPRV++S +++GDGI
Sbjct: 167 KVGGIIAFDNTLWFGFVAEDEDGVPEHMR-EYRAALIEFNKKLALDPRVEVSQISIGDGI 225

Query: 182 TICRRI 187
           T+CRR+
Sbjct: 226 TLCRRL 231

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O04899|CAMT5_TOBAC Caffeoyl-CoA O-methyltransferase 5 OS=Nicotiana tabacum GN=CCOAOMT5 PE=2 SV=1

 Score =  233 bits (593), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 108/187 (57%), Positives = 144/187 (77%)

Query: 1   MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI 60
           +M T+ D GQ + MLL+L+NAK T+EIGV+TGYSLL TAL IP+DG+I A+D+NRE YEI
Sbjct: 53  LMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALAIPDDGKILAMDINRENYEI 112

Query: 61  GLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL 120
           GLPII+KAGV HKI F E  AL VLDQL++  +N G++D+ FVDADKDNY NYH+R++ L
Sbjct: 113 GLPIIEKAGVAHKIEFREGPALPVLDQLVEDKKNHGTYDFIFVDADKDNYINYHKRIIDL 172

Query: 121 LKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG 180
           +KVGG+  YDNTLW G+V  P +     +    R  +L+LN++LA DPR+++  + +GDG
Sbjct: 173 VKVGGLIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDG 232

Query: 181 ITICRRI 187
           IT+CRRI
Sbjct: 233 ITLCRRI 239

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers. Methylates 5-hydroxyferulolyl-CoA more efficiently than caffeoyl-CoA.

Nicotiana tabacum (taxid: 4097)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O65922|CAMT2_POPTR Caffeoyl-CoA O-methyltransferase 2 OS=Populus trichocarpa GN=CCOAOMT2 PE=2 SV=1

 Score =  232 bits (591), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 106/187 (56%), Positives = 145/187 (77%)

Query: 1   MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI 60
           +M T+ D GQ + MLL+L+NAK T+EIGVFTGYSLL TAL IPEDG+I A+D+NRE YE+
Sbjct: 60  IMTTSADEGQFLNMLLKLINAKNTMEIGVFTGYSLLATALAIPEDGKILAMDINRENYEL 119

Query: 61  GLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL 120
           GLP+I+KAG++HKI F E  AL VLDQ+++  +  G++D+ FVDADKDNY NYH+RL++L
Sbjct: 120 GLPVIQKAGLEHKIEFKEGPALPVLDQMIEDGKYHGTYDFIFVDADKDNYINYHKRLIEL 179

Query: 121 LKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG 180
           +KVGG+  YDNTLW G+V  P +     +    R  +L+LN++LA DPR+++  + +GDG
Sbjct: 180 VKVGGLIGYDNTLWNGSVVAPADAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDG 239

Query: 181 ITICRRI 187
           IT+CRRI
Sbjct: 240 ITLCRRI 246

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Populus trichocarpa (taxid: 3694)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O49499|CAMT4_ARATH Caffeoyl-CoA O-methyltransferase 1 OS=Arabidopsis thaliana GN=CCOAOMT1 PE=1 SV=1

 Score =  231 bits (589), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 107/187 (57%), Positives = 144/187 (77%)

Query: 1   MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI 60
           +M T+ D GQ + ML++LVNAK T+EIGV+TGYSLL TAL +PEDG+I A+DVNRE YE+
Sbjct: 72  IMTTSADEGQFLNMLIKLVNAKNTMEIGVYTGYSLLATALALPEDGKILAMDVNRENYEL 131

Query: 61  GLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL 120
           GLPII+KAGV HKI+F E  AL VLD+++   +N G++D+ FVDADKDNY NYH+RL+ L
Sbjct: 132 GLPIIEKAGVAHKIDFREGPALPVLDEIVADEKNHGTYDFIFVDADKDNYINYHKRLIDL 191

Query: 121 LKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG 180
           +K+GG+  YDNTLW G+V  P +     +    R  +L+LN++LA DPR+++  + +GDG
Sbjct: 192 VKIGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDG 251

Query: 181 ITICRRI 187
           ITICRRI
Sbjct: 252 ITICRRI 258

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
255546215	228	o-methyltransferase, putative [Ricinus c	0.989	0.815	0.754	2e-78
224122628	236	predicted protein [Populus trichocarpa]	0.994	0.792	0.744	3e-77
255546213	228	o-methyltransferase, putative [Ricinus c	0.984	0.811	0.736	1e-75
297738705	236	unnamed protein product [Vitis vinifera]	0.989	0.788	0.737	5e-74
147799759	1625	hypothetical protein VITISV_020117 [Viti	0.989	0.114	0.737	9e-74
225444995	282	PREDICTED: probable caffeoyl-CoA O-methy	0.989	0.659	0.737	1e-73
171849075	237	Chain A, Crystal Structure Of Pfomt, Phe	0.989	0.784	0.684	2e-72
297803474	238	hypothetical protein ARALYDRAFT_913940 [	0.989	0.781	0.695	2e-72
18416703	232	putative caffeoyl-CoA O-methyltransferas	0.989	0.801	0.695	5e-72
4539418	242	caffeoyl-CoA O-methyltransferase-like pr	0.989	0.768	0.695	7e-72

>gi|255546215|ref|XP_002514167.1| o-methyltransferase, putative [Ricinus communis] gi|223546623|gb|EEF48121.1| o-methyltransferase, putative [Ricinus communis]

 Score =  297 bits (760), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 141/187 (75%), Positives = 167/187 (89%), Gaps = 1/187 (0%)

Query: 2   MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 61
           M T+PDAGQL+A+LL+LVNAKKTIE+GVFTGYSLLLTAL+IPEDG+ITAIDVNRETY+IG
Sbjct: 43  MATSPDAGQLIALLLQLVNAKKTIEVGVFTGYSLLLTALSIPEDGKITAIDVNRETYDIG 102

Query: 62  LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 121
           LPII+KAGV+HKI+F+ESEAL VLD+LLK   NEGSFD+AFVDADK NY NYHERL+KLL
Sbjct: 103 LPIIRKAGVEHKIDFMESEALPVLDKLLKDHGNEGSFDFAFVDADKINYWNYHERLLKLL 162

Query: 122 KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGI 181
           KVGGI VYDNTLWGGTVA+PEE+ P+  R   RQ  ++LN+ LA D R+Q+SH +LGDGI
Sbjct: 163 KVGGIVVYDNTLWGGTVAIPEEEAPEAMR-MGRQLTIELNKLLAADSRIQISHASLGDGI 221

Query: 182 TICRRIF 188
           TICRR++
Sbjct: 222 TICRRLY 228

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122628|ref|XP_002330529.1| predicted protein [Populus trichocarpa] gi|222872463|gb|EEF09594.1| predicted protein [Populus trichocarpa]

 Score =  293 bits (749), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 140/188 (74%), Positives = 162/188 (86%), Gaps = 1/188 (0%)

Query: 1   MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI 60
           MM TAPDAGQLMAMLL+LVNA+KTIE+GVFTGYSLLLTAL+IP+DG+ITAIDVNRE YEI
Sbjct: 50  MMATAPDAGQLMAMLLKLVNAQKTIEVGVFTGYSLLLTALSIPKDGKITAIDVNREAYEI 109

Query: 61  GLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL 120
           GLPII+ AGV+HKINFIESEA  +LD+LL+   NEGSFD+AFVDADK NY NYHERLMKL
Sbjct: 110 GLPIIRNAGVEHKINFIESEAQPILDKLLEDHGNEGSFDFAFVDADKVNYWNYHERLMKL 169

Query: 121 LKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG 180
           LKVGGI VYDNTLWGGTVA+ EE  P++ + + RQ  ++ N+ LA D RVQ+SH   GDG
Sbjct: 170 LKVGGIVVYDNTLWGGTVALSEESTPENMK-AGRQLTIEFNKLLAADSRVQISHAPSGDG 228

Query: 181 ITICRRIF 188
           ITICRRI+
Sbjct: 229 ITICRRIY 236

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546213|ref|XP_002514166.1| o-methyltransferase, putative [Ricinus communis] gi|223546622|gb|EEF48120.1| o-methyltransferase, putative [Ricinus communis]

 Score =  288 bits (736), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 137/186 (73%), Positives = 161/186 (86%), Gaps = 1/186 (0%)

Query: 2   MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 61
           M T+PDAGQ MAMLL+LVNAKKTIE+GVFTGYSLLLTAL+IPEDG+I AIDV+RE YEIG
Sbjct: 43  MATSPDAGQFMAMLLQLVNAKKTIEVGVFTGYSLLLTALSIPEDGKIVAIDVDREAYEIG 102

Query: 62  LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 121
           LPII+KAGV+HKI+F+ESEAL VLD+LLK   NE SFD+AFVDADK NY NYHERL+KL+
Sbjct: 103 LPIIRKAGVEHKIDFMESEALPVLDKLLKEHGNESSFDFAFVDADKINYWNYHERLLKLV 162

Query: 122 KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGI 181
           KVGGI +YDN+LW G+VAVPEE+ P+H R   RQ  ++ N+ LA D RVQ+SH +LGDGI
Sbjct: 163 KVGGIVIYDNSLWRGSVAVPEEEAPEHLR-FCRQLTIEHNKFLAADSRVQISHASLGDGI 221

Query: 182 TICRRI 187
           TICRRI
Sbjct: 222 TICRRI 227

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738705|emb|CBI27950.3| unnamed protein product [Vitis vinifera]

 Score =  282 bits (721), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 138/187 (73%), Positives = 162/187 (86%), Gaps = 1/187 (0%)

Query: 1   MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI 60
           +M TAPDAGQLM MLLRLVNAKKTIEIGVFTGYSLLLTAL+IP+DG+ITAIDV+R+ YE+
Sbjct: 50  VMATAPDAGQLMDMLLRLVNAKKTIEIGVFTGYSLLLTALSIPDDGKITAIDVDRQAYEM 109

Query: 61  GLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL 120
           GLP+I+KAGV+HKINFIES+AL VLD+LL+  ENEG FD+AFVDADK NY NYHERLMKL
Sbjct: 110 GLPVIRKAGVEHKINFIESQALPVLDKLLEEHENEGIFDFAFVDADKVNYKNYHERLMKL 169

Query: 121 LKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG 180
           LK+GGI VYDNTL GGTVA+PEE V ++ R  +R+  ++LN  LA DPRVQ+    LGDG
Sbjct: 170 LKMGGIVVYDNTLRGGTVAMPEELVAENLR-ENRRLTIELNNFLAADPRVQICLAPLGDG 228

Query: 181 ITICRRI 187
           ITICRR+
Sbjct: 229 ITICRRV 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147799759|emb|CAN75051.1| hypothetical protein VITISV_020117 [Vitis vinifera]

 Score =  281 bits (719), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 138/187 (73%), Positives = 162/187 (86%), Gaps = 1/187 (0%)

Query: 1    MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI 60
            +M TAPDAGQLM MLLRLVNAKKTIEIGVFTGYSLLLTAL+IP+DG+ITAIDV+R+ YE+
Sbjct: 1439 VMATAPDAGQLMDMLLRLVNAKKTIEIGVFTGYSLLLTALSIPDDGKITAIDVDRQAYEM 1498

Query: 61   GLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL 120
            GLP+I+KAGV+HKINFIES+AL VLD+LL+  ENEG FD+AFVDADK NY NYHERLMKL
Sbjct: 1499 GLPVIRKAGVEHKINFIESQALPVLDKLLEEHENEGIFDFAFVDADKXNYKNYHERLMKL 1558

Query: 121  LKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG 180
            LK+GGI VYDNTL GGTVA+PEE V ++ R  +R+  ++LN  LA DPRVQ+    LGDG
Sbjct: 1559 LKMGGIVVYDNTLRGGTVAMPEELVAENLR-ENRRLTIELNNFLAADPRVQICLAPLGDG 1617

Query: 181  ITICRRI 187
            ITICRR+
Sbjct: 1618 ITICRRV 1624

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444995|ref|XP_002279921.1| PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220-like [Vitis vinifera]

 Score =  281 bits (718), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 138/187 (73%), Positives = 162/187 (86%), Gaps = 1/187 (0%)

Query: 1   MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI 60
           +M TAPDAGQLM MLLRLVNAKKTIEIGVFTGYSLLLTAL+IP+DG+ITAIDV+R+ YE+
Sbjct: 96  VMATAPDAGQLMDMLLRLVNAKKTIEIGVFTGYSLLLTALSIPDDGKITAIDVDRQAYEM 155

Query: 61  GLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL 120
           GLP+I+KAGV+HKINFIES+AL VLD+LL+  ENEG FD+AFVDADK NY NYHERLMKL
Sbjct: 156 GLPVIRKAGVEHKINFIESQALPVLDKLLEEHENEGIFDFAFVDADKVNYKNYHERLMKL 215

Query: 121 LKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG 180
           LK+GGI VYDNTL GGTVA+PEE V ++ R  +R+  ++LN  LA DPRVQ+    LGDG
Sbjct: 216 LKMGGIVVYDNTLRGGTVAMPEELVAENLR-ENRRLTIELNNFLAADPRVQICLAPLGDG 274

Query: 181 ITICRRI 187
           ITICRR+
Sbjct: 275 ITICRRV 281

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|171849075|pdb|3C3Y|A Chain A, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid O- Methyltransferase From M. Crystallinum gi|171849076|pdb|3C3Y|B Chain B, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid O- Methyltransferase From M. Crystallinum gi|37720881|gb|AAN61072.1| O-methyltransferase [Mesembryanthemum crystallinum]

 Score =  276 bits (707), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 128/187 (68%), Positives = 159/187 (85%), Gaps = 1/187 (0%)

Query: 2   MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 61
           M T+P AGQLM+ +L+LVNAKKTIE+GVFTGYSLLLTAL+IP+DG+ITAID +RE YEIG
Sbjct: 52  MSTSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIG 111

Query: 62  LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 121
           LP I+KAGV+HKINFIES+A+  LD LL+  E+EGS+D+ FVDADK NY  YHERLMKL+
Sbjct: 112 LPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLV 171

Query: 122 KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGI 181
           KVGGI  YDNTLWGGTVA PE +VPD F   +R+A+++LN+ LA DPR+++ H+ LGDGI
Sbjct: 172 KVGGIVAYDNTLWGGTVAQPESEVPD-FMKENREAVIELNKLLAADPRIEIVHLPLGDGI 230

Query: 182 TICRRIF 188
           T CRR++
Sbjct: 231 TFCRRLY 237

Source: Mesembryanthemum crystallinum

Species: Mesembryanthemum crystallinum

Genus: Mesembryanthemum

Family: Aizoaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803474|ref|XP_002869621.1| hypothetical protein ARALYDRAFT_913940 [Arabidopsis lyrata subsp. lyrata] gi|297315457|gb|EFH45880.1| hypothetical protein ARALYDRAFT_913940 [Arabidopsis lyrata subsp. lyrata]

 Score =  276 bits (707), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 130/187 (69%), Positives = 158/187 (84%), Gaps = 1/187 (0%)

Query: 2   MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 61
           M TAPDAGQLM MLL+LVNA+KTIE+GVFTGYSLLLTALT+PEDG++ AIDVNR++YEIG
Sbjct: 53  MATAPDAGQLMGMLLKLVNARKTIEVGVFTGYSLLLTALTLPEDGKVIAIDVNRDSYEIG 112

Query: 62  LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 121
           LP+IKK GV+HKI+F ESEAL  LD+LL    NEG FD+AFVDADK NY NYHERL++L+
Sbjct: 113 LPVIKKVGVEHKIDFRESEALPALDELLNDKANEGGFDFAFVDADKVNYWNYHERLIRLI 172

Query: 122 KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGI 181
           KVGGI VYDNTLWGG+VA P+   P+ +R   ++A L+LN+ L+ D RVQ+S  ALGDGI
Sbjct: 173 KVGGIIVYDNTLWGGSVAEPDSSTPE-WRIEVKKATLELNKKLSADQRVQISQAALGDGI 231

Query: 182 TICRRIF 188
           TICRR++
Sbjct: 232 TICRRLY 238

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18416703|ref|NP_567739.1| putative caffeoyl-CoA O-methyltransferase [Arabidopsis thaliana] gi|30580368|sp|Q9C5D7.1|CAMT3_ARATH RecName: Full=Probable caffeoyl-CoA O-methyltransferase At4g26220; AltName: Full=Trans-caffeoyl-CoA 3-O-methyltransferase; Short=CCoAMT; Short=CCoAOMT gi|13430810|gb|AAK26027.1|AF360317_1 putative caffeoyl-CoA O-methyltransferase [Arabidopsis thaliana] gi|15810549|gb|AAL07162.1| putative caffeoyl-CoA O-methyltransferase [Arabidopsis thaliana] gi|332659772|gb|AEE85172.1| putative caffeoyl-CoA O-methyltransferase [Arabidopsis thaliana]

 Score =  275 bits (704), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 130/187 (69%), Positives = 158/187 (84%), Gaps = 1/187 (0%)

Query: 2   MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 61
           M TAPDAGQLM MLL LVNA+KTIE+GVFTGYSLLLTALT+PEDG++ AID+NR++YEIG
Sbjct: 47  MATAPDAGQLMGMLLNLVNARKTIEVGVFTGYSLLLTALTLPEDGKVIAIDMNRDSYEIG 106

Query: 62  LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 121
           LP+IKKAGV+HKI+F ESEAL  LD+LL    NEG FD+AFVDADK NY NYHERL++L+
Sbjct: 107 LPVIKKAGVEHKIDFKESEALPALDELLNNKVNEGGFDFAFVDADKLNYWNYHERLIRLI 166

Query: 122 KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGI 181
           KVGGI VYDNTLWGG+VA P+   P+ +R   ++A L+LN+ L+ D RVQ+S  ALGDGI
Sbjct: 167 KVGGIIVYDNTLWGGSVAEPDSSTPE-WRIEVKKATLELNKKLSADQRVQISQAALGDGI 225

Query: 182 TICRRIF 188
           TICRR++
Sbjct: 226 TICRRLY 232

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4539418|emb|CAB38951.1| caffeoyl-CoA O-methyltransferase-like protein [Arabidopsis thaliana] gi|7269473|emb|CAB79477.1| caffeoyl-CoA O-methyltransferase-like protein [Arabidopsis thaliana]

 Score =  275 bits (703), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 130/187 (69%), Positives = 158/187 (84%), Gaps = 1/187 (0%)

Query: 2   MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 61
           M TAPDAGQLM MLL LVNA+KTIE+GVFTGYSLLLTALT+PEDG++ AID+NR++YEIG
Sbjct: 57  MATAPDAGQLMGMLLNLVNARKTIEVGVFTGYSLLLTALTLPEDGKVIAIDMNRDSYEIG 116

Query: 62  LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 121
           LP+IKKAGV+HKI+F ESEAL  LD+LL    NEG FD+AFVDADK NY NYHERL++L+
Sbjct: 117 LPVIKKAGVEHKIDFKESEALPALDELLNNKVNEGGFDFAFVDADKLNYWNYHERLIRLI 176

Query: 122 KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGI 181
           KVGGI VYDNTLWGG+VA P+   P+ +R   ++A L+LN+ L+ D RVQ+S  ALGDGI
Sbjct: 177 KVGGIIVYDNTLWGGSVAEPDSSTPE-WRIEVKKATLELNKKLSADQRVQISQAALGDGI 235

Query: 182 TICRRIF 188
           TICRR++
Sbjct: 236 TICRRLY 242

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
TAIR|locus:2136799	232	CCoAOMT7 "caffeoyl coenzyme A	0.989	0.801	0.695	2.4e-67
TAIR|locus:2200271	232	CCOAMT "caffeoyl-CoA 3-O-methy	0.941	0.762	0.596	2.5e-56
TAIR|locus:2124286	259	CCoAOMT1 "caffeoyl coenzyme A	0.994	0.722	0.572	5.3e-56
UNIPROTKB|Q7F8T6	292	ROMT-17 "Tricin synthase 2" [O	0.989	0.636	0.543	2.6e-54
TAIR|locus:2200256	233	TSM1 [Arabidopsis thaliana (ta	0.973	0.785	0.548	1e-52
UNIPROTKB|Q9XGP7	252	ROMT-15 "Tricin synthase 1" [O	0.984	0.734	0.552	2.2e-50
ZFIN|ZDB-GENE-030131-1072	286	comtd1 "catechol-O-methyltrans	0.936	0.615	0.437	1.5e-35
UNIPROTKB|F1NI85	267	COMTD1 "Uncharacterized protei	0.904	0.636	0.446	1.1e-34
TAIR|locus:2079557	290	OMTF3 "O-MTase family 3 protei	0.930	0.603	0.428	1.2e-33
DICTYBASE|DDB_G0271590	251	omt1 "O-methyltransferase fami	0.946	0.709	0.414	1e-29

TAIR|locus:2136799 CCoAOMT7 "caffeoyl coenzyme A ester O-methyltransferase 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
 Identities = 130/187 (69%), Positives = 158/187 (84%)

Query:     2 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 61
             M TAPDAGQLM MLL LVNA+KTIE+GVFTGYSLLLTALT+PEDG++ AID+NR++YEIG
Sbjct:    47 MATAPDAGQLMGMLLNLVNARKTIEVGVFTGYSLLLTALTLPEDGKVIAIDMNRDSYEIG 106

Query:    62 LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 121
             LP+IKKAGV+HKI+F ESEAL  LD+LL    NEG FD+AFVDADK NY NYHERL++L+
Sbjct:   107 LPVIKKAGVEHKIDFKESEALPALDELLNNKVNEGGFDFAFVDADKLNYWNYHERLIRLI 166

Query:   122 KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGI 181
             KVGGI VYDNTLWGG+VA P+   P+ +R   ++A L+LN+ L+ D RVQ+S  ALGDGI
Sbjct:   167 KVGGIIVYDNTLWGGSVAEPDSSTPE-WRIEVKKATLELNKKLSADQRVQISQAALGDGI 225

Query:   182 TICRRIF 188
             TICRR++
Sbjct:   226 TICRRLY 232

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

TAIR|locus:2200271 CCOAMT "caffeoyl-CoA 3-O-methyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
 Identities = 108/181 (59%), Positives = 143/181 (79%)

Query:     7 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK 66
             D G  ++ML++++NAK TIEIGVFTGYSLL TAL +PEDG+ITAID+++E YE+GL  IK
Sbjct:    55 DEGHFLSMLVKIMNAKNTIEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIK 114

Query:    67 KAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 126
             KAGVDHKINFI S+ L  LDQL+    ++  FD+AF DADK +Y N+HERL+KL+KVGGI
Sbjct:   115 KAGVDHKINFIHSDGLKALDQLVN---DKCEFDFAFADADKSSYVNFHERLLKLVKVGGI 171

Query:   127 AVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR 186
               +DNTLW G VA  E+ VP+H R   R A+++ N+ LA DPRV++S +++GDGIT+CRR
Sbjct:   172 IAFDNTLWFGFVAEDEDGVPEHMR-EYRAALIEFNKKLALDPRVEVSQISIGDGITLCRR 230

Query:   187 I 187
             +
Sbjct:   231 L 231

GO:0005737 "cytoplasm" evidence=ISM

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

GO:0009809 "lignin biosynthetic process" evidence=ISS

TAIR|locus:2124286 CCoAOMT1 "caffeoyl coenzyme A O-methyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 107/187 (57%), Positives = 144/187 (77%)

Query:     1 MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI 60
             +M T+ D GQ + ML++LVNAK T+EIGV+TGYSLL TAL +PEDG+I A+DVNRE YE+
Sbjct:    72 IMTTSADEGQFLNMLIKLVNAKNTMEIGVYTGYSLLATALALPEDGKILAMDVNRENYEL 131

Query:    61 GLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL 120
             GLPII+KAGV HKI+F E  AL VLD+++   +N G++D+ FVDADKDNY NYH+RL+ L
Sbjct:   132 GLPIIEKAGVAHKIDFREGPALPVLDEIVADEKNHGTYDFIFVDADKDNYINYHKRLIDL 191

Query:   121 LKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG 180
             +K+GG+  YDNTLW G+V  P +     +    R  +L+LN++LA DPR+++  + +GDG
Sbjct:   192 VKIGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDG 251

Query:   181 ITICRRI 187
             ITICRRI
Sbjct:   252 ITICRRI 258

GO:0005634 "nucleus" evidence=ISM

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009805 "coumarin biosynthetic process" evidence=RCA;IMP

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|Q7F8T6 ROMT-17 "Tricin synthase 2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 101/186 (54%), Positives = 140/186 (75%)

Query:     2 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 61
             M + P+ GQL+++LL L  AK TIE+GVFTG S+L TAL IP+DG++ AIDV+RE +++G
Sbjct:   106 MSSPPEEGQLLSLLLNLTGAKNTIEVGVFTGCSVLATALAIPDDGKVVAIDVSREYFDLG 165

Query:    62 LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 121
             LP+IKKAGV HK++F E  A+ +LD LL   ENEG FD+AFVDADK NY  YHERL++L+
Sbjct:   166 LPVIKKAGVAHKVDFREGAAMPILDNLLANEENEGKFDFAFVDADKGNYGEYHERLLRLV 225

Query:   122 KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGI 181
             + GG+  YDNTLWGG+VA+ ++ V + F    R++I+  N  +A DPRV+   + + DGI
Sbjct:   226 RAGGVLAYDNTLWGGSVALEDDSVLEEFDQDIRRSIVAFNAKIAGDPRVEAVQLPVSDGI 285

Query:   182 TICRRI 187
             T+CRR+
Sbjct:   286 TLCRRL 291

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

TAIR|locus:2200256 TSM1 [Arabidopsis thaliana (taxid:3702)]

 Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
 Identities = 102/186 (54%), Positives = 142/186 (76%)

Query:     2 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 61
             MG   D    ++ML++++NAK TIEIGVFTGYSL   AL +PEDG+ITAID+++  Y +G
Sbjct:    50 MGVPVDESLFLSMLVKIINAKNTIEIGVFTGYSLFTVALALPEDGRITAIDIDQAGYNLG 109

Query:    62 LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 121
             L  +KKAGVDHKINFI+S+A+  LDQLL   + E  +D+AFVDADK NY  + E+L+KL+
Sbjct:   110 LEFMKKAGVDHKINFIQSDAVRGLDQLLNGEKQE--YDFAFVDADKTNYVYFLEKLLKLV 167

Query:   122 KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGI 181
             KVGGI  +DNTLW GT+   E +VP H R + R+A+L+ N+ LA DPRV+++ +++GDG+
Sbjct:   168 KVGGIIAFDNTLWFGTLIQKENEVPGHMR-AYREALLEFNKILARDPRVEIAQISIGDGL 226

Query:   182 TICRRI 187
             T+CRR+
Sbjct:   227 TLCRRL 232

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

GO:0048316 "seed development" evidence=IMP

GO:0080012 "trihydroxyferuloyl spermidine O-methyltransferase activity" evidence=IMP;IDA

GO:0080076 "caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080077 "trihydroxyferuloyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080078 "tricaffeoyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080088 "spermidine hydroxycinnamate conjugate biosynthetic process" evidence=IDA

GO:0010584 "pollen exine formation" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|Q9XGP7 ROMT-15 "Tricin synthase 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
 Identities = 105/190 (55%), Positives = 138/190 (72%)

Query:     2 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 61
             M ++ D  QL+ MLL++  AK+TIE+GVFTGYSLL TAL +PEDG++ AID +RE+YEIG
Sbjct:    63 MQSSADEAQLLGMLLKMAGAKRTIEVGVFTGYSLLATALALPEDGKVVAIDPDRESYEIG 122

Query:    62 LPIIKKAGVDHKINFIESEALSVLDQLLKYSE---NEGSFDYAFVDADKDNYCNYHERLM 118
              P ++KAGV HK++F E + L  LD+LL        E +FD+AFVDADK NY  YHE+L+
Sbjct:   123 RPFLEKAGVAHKVDFREGKGLEKLDELLAEEAAAGREAAFDFAFVDADKPNYVKYHEQLL 182

Query:   119 KLLKVGGIAVYDNTLWGGTVAVPEEQ-VPDHFRGSSRQAILDLNRSLADDPRVQLSHVAL 177
             +L++VGG  VYDNTLW GTVA+P +  + D  R  S  AI DLN  LA DPR+ +  +A+
Sbjct:   183 QLVRVGGHIVYDNTLWAGTVALPPDTPLSDLDRRFS-VAIRDLNSRLAADPRIDVCQLAI 241

Query:   178 GDGITICRRI 187
              DGITICRR+
Sbjct:   242 ADGITICRRL 251

GO:0005634 "nucleus" evidence=IDA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

ZFIN|ZDB-GENE-030131-1072 comtd1 "catechol-O-methyltransferase domain containing 1" [Danio rerio (taxid:7955)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 80/183 (43%), Positives = 116/183 (63%)

Query:     1 MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI 60
             +M  A +  QLMA L +L+ A KTIEIG++TGY+ L  AL +PE+G++ A ++N +  +I
Sbjct:   107 VMMVASEQAQLMANLAKLIEANKTIEIGLYTGYNALSLALVVPENGRVVACEINEDYVKI 166

Query:    61 GLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL 120
             G P   +AGV++KI+     A+  LD+LL   E  G +D+ F+DADK NY  Y+E+ ++L
Sbjct:   167 GKPFFAEAGVENKIDIRLKPAVETLDELLSAGE-AGMYDFVFIDADKKNYETYYEKSLQL 225

Query:   121 LKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG 180
             ++ GGI   DN LWGG V  P E   D     S QAI  LN+ L  D R+ LS + +GDG
Sbjct:   226 VRKGGIVAIDNVLWGGRVINPAE---DDL---SSQAIDKLNKKLHKDERIDLSMLTVGDG 279

Query:   181 ITI 183
             +T+
Sbjct:   280 LTL 282

GO:0008171 "O-methyltransferase activity" evidence=IEA

UNIPROTKB|F1NI85 COMTD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 79/177 (44%), Positives = 114/177 (64%)

Query:     7 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK 66
             D  QLMA L++L+ AKK IE+GV TGY+ L  AL +P++G++ A D+N +  +IG P+ K
Sbjct:    94 DQAQLMANLIKLIKAKKVIEVGVLTGYNALSMALALPDNGRVIACDINEDYAKIGKPLWK 153

Query:    67 KAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 126
             +AGVDHKI+     A   LD+LL   E E +FD+AF+DADK++Y  Y+E+ ++L+K GGI
Sbjct:   154 EAGVDHKIDLRIKPATQTLDELLAGGEAE-TFDFAFIDADKESYNEYYEKCLRLIKKGGI 212

Query:   127 AVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITI 183
                DN L  G V  P +   D     + Q+I  LN  L  D RV +S + +GDG+T+
Sbjct:   213 IAIDNVLRCGMVLKPRK---DDL---ATQSIHHLNEKLVRDARVNISMIPMGDGVTL 263

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

TAIR|locus:2079557 OMTF3 "O-MTase family 3 protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 78/182 (42%), Positives = 112/182 (61%)

Query:     5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPI 64
             +PD  QL+AML+ ++ AK+ IE+GV+TGYS L  AL +PE G++ A D +    E+    
Sbjct:   115 SPDQAQLLAMLVEILGAKRCIEVGVYTGYSSLAVALVLPESGRLVACDKDANALEVAKRY 174

Query:    65 IKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG 124
              + AGV HK+      A   L  +++  E E S+D+AF+DADK  Y  Y E L++L++VG
Sbjct:   175 YELAGVSHKVTVKHGLAAESLMSMIQNGE-ESSYDFAFLDADKAMYQEYFESLLRLVRVG 233

Query:   125 GIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITIC 184
             G+ V DN LW G VA  +  V D    S R    + N+ L DD RV +S V++GDG+TIC
Sbjct:   234 GVIVIDNVLWHGWVA--DSTVNDERTISLR----NFNKKLMDDQRVSISMVSIGDGMTIC 287

Query:   185 RR 186
             R+
Sbjct:   288 RK 289

GO:0005576 "extracellular region" evidence=ISM

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0008276 "protein methyltransferase activity" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

DICTYBASE|DDB_G0271590 omt1 "O-methyltransferase family 3 protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 80/193 (41%), Positives = 119/193 (61%)

Query:     2 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 61
             M T  +  Q   +LL+++NAKK I++GV+TG S L  AL++P+DG++T+ID  R+  E  
Sbjct:    59 MLTDGNQNQFFTLLLKVLNAKKAIDVGVYTGLSSLSFALSMPDDGKVTSIDCVRDYEECC 118

Query:    62 LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 121
                 KKA VDHKIN +   A + L +L+   E+ G+FD+ F+DADKD+Y  Y+E  +KL+
Sbjct:   119 HLHWKKANVDHKINLVIDNAKNHLQKLIDNGES-GTFDFIFIDADKDSYDAYYELSLKLI 177

Query:   122 KVGGIAVYDNTLWGGTVAV------PEEQVPDHFRGS-SRQAILD----LNRSLADDPRV 170
             + GGI  +DN L+ G   V      PE+Q+   F G  S Q ++D    LN  +A+D RV
Sbjct:   178 RKGGIIAFDNILFFGATLVDHDSKKPEDQI---FLGCPSFQRMVDALKLLNEKIANDERV 234

Query:   171 QLSHVALGDGITI 183
               + + L DGIT+
Sbjct:   235 IKTMLPLSDGITL 247

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SLP8	CAMT_CITNA	2, ., 1, ., 1, ., 1, 0, 4	0.5454	0.9946	0.8060	N/A	no
Q9C5D7	CAMT3_ARATH	2, ., 1, ., 1, ., 1, 0, 4	0.6951	0.9893	0.8017	yes	no
O65862	CAMT1_POPTR	2, ., 1, ., 1, ., 1, 0, 4	0.5828	0.9946	0.7570	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.1.1.104	0.914
3rd Layer	2.1.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_1450034 hypothetical protein (236 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	188
pfam01596	204	pfam01596, Methyltransf_3, O-methyltransferase	3e-94
PLN02781	234	PLN02781, PLN02781, Probable caffeoyl-CoA O-methyl	8e-94
PLN02589	247	PLN02589, PLN02589, caffeoyl-CoA O-methyltransfera	1e-80
PLN02476	278	PLN02476, PLN02476, O-methyltransferase	6e-46
COG4122	219	COG4122, COG4122, Predicted O-methyltransferase [G	5e-45
pfam13578	105	pfam13578, Methyltransf_24, Methyltransferase doma	9e-10
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	9e-05
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	0.001
COG2519	256	COG2519, GCD14, tRNA(1-methyladenosine) methyltran	0.001
PRK00377	198	PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltr	0.001

>gnl|CDD|201880 pfam01596, Methyltransf_3, O-methyltransferase

 Score =  272 bits (697), Expect = 3e-94
 Identities = 102/186 (54%), Positives = 138/186 (74%), Gaps = 7/186 (3%)

Query: 2   MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 61
           M  +P+ GQ ++MLL+L+ AK+T+EIGVFTGYSLL TAL +PEDG+ITA D++ E YEIG
Sbjct: 26  MQISPEEGQFLSMLLKLIGAKRTLEIGVFTGYSLLATALALPEDGKITACDIDPEAYEIG 85

Query: 62  LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 121
           LP I+KAGV  KI+F   +AL  L++L+K  +  G FD+ FVDADK NY NY+ERL++L+
Sbjct: 86  LPFIQKAGVADKISFRLGDALPTLEELVK-DKPLGEFDFIFVDADKSNYPNYYERLLELV 144

Query: 122 KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGI 181
           KVGG+   DNTLW G VA P+++VP          + +LN+ LA D RV++S + +GDGI
Sbjct: 145 KVGGLIAIDNTLWFGKVAEPDDEVPKT------VRVRELNKLLASDERVEISMLPVGDGI 198

Query: 182 TICRRI 187
           T+CRRI
Sbjct: 199 TLCRRI 204

Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase and a family of bacterial O-methyltransferases that may be involved in antibiotic production. Length = 204

>gnl|CDD|215417 PLN02781, PLN02781, Probable caffeoyl-CoA O-methyltransferase

 Score =  272 bits (697), Expect = 8e-94
 Identities = 111/187 (59%), Positives = 152/187 (81%), Gaps = 2/187 (1%)

Query: 2   MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 61
           M    D G  ++ML++++NAK T+EIGVFTGYSLL TAL +PEDG+ITAID+++E YE+G
Sbjct: 50  MEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVG 109

Query: 62  LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 121
           L  IKKAGVDHKINFI+S+ALS LDQLL  ++ +  FD+AFVDADK NY ++HE+L+KL+
Sbjct: 110 LEFIKKAGVDHKINFIQSDALSALDQLLN-NDPKPEFDFAFVDADKPNYVHFHEQLLKLV 168

Query: 122 KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGI 181
           KVGGI  +DNTLW G VA  E++VP+H R + R+A+L+ N+ LA DPRV++S +++GDG+
Sbjct: 169 KVGGIIAFDNTLWFGFVAQEEDEVPEHMR-AYRKALLEFNKLLASDPRVEISQISIGDGV 227

Query: 182 TICRRIF 188
           T+CRR+ 
Sbjct: 228 TLCRRLV 234

Length = 234

>gnl|CDD|166230 PLN02589, PLN02589, caffeoyl-CoA O-methyltransferase

 Score =  239 bits (611), Expect = 1e-80
 Identities = 106/187 (56%), Positives = 144/187 (77%)

Query: 1   MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI 60
           +M T+ D GQ + MLL+L+NAK T+EIGV+TGYSLL TAL +PEDG+I A+D+NRE YE+
Sbjct: 60  IMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYEL 119

Query: 61  GLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL 120
           GLP+I+KAGV HKI+F E  AL VLDQ+++  +  G+FD+ FVDADKDNY NYH+RL+ L
Sbjct: 120 GLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDL 179

Query: 121 LKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG 180
           +KVGG+  YDNTLW G+V  P +     +    R  +L+LN++LA DPR+++  + +GDG
Sbjct: 180 VKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDG 239

Query: 181 ITICRRI 187
           IT+CRRI
Sbjct: 240 ITLCRRI 246

Length = 247

>gnl|CDD|178094 PLN02476, PLN02476, O-methyltransferase

 Score =  152 bits (384), Expect = 6e-46
 Identities = 78/185 (42%), Positives = 115/185 (62%), Gaps = 7/185 (3%)

Query: 2   MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 61
           M  +PD  QL+AML++++ A++ IE+GV+TGYS L  AL +PE G + A + +  + E+ 
Sbjct: 100 MQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVA 159

Query: 62  LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 121
               + AGV HK+N     A   L  +++  E   S+D+AFVDADK  Y +Y E L++L+
Sbjct: 160 KRYYELAGVSHKVNVKHGLAAESLKSMIQNGE-GSSYDFAFVDADKRMYQDYFELLLQLV 218

Query: 122 KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGI 181
           +VGG+ V DN LW G VA P   V D    +   +I + N+ L DD RV +S V +GDG+
Sbjct: 219 RVGGVIVMDNVLWHGRVADP--LVND----AKTISIRNFNKKLMDDKRVSISMVPIGDGM 272

Query: 182 TICRR 186
           TICR+
Sbjct: 273 TICRK 277

Length = 278

>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]

 Score =  147 bits (374), Expect = 5e-45
 Identities = 72/182 (39%), Positives = 105/182 (57%), Gaps = 10/182 (5%)

Query: 6   PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII 65
           P+ G L+ +L RL   K+ +EIG   GYS L  AL +P+DG++T I+ + E  EI    +
Sbjct: 45  PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENL 104

Query: 66  KKAGVDHKINFIES-EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG 124
            +AGVD +I  +   +AL VL +LL     +GSFD  F+DADK +Y  Y ER + LL+ G
Sbjct: 105 AEAGVDDRIELLLGGDALDVLSRLL-----DGSFDLVFIDADKADYPEYLERALPLLRPG 159

Query: 125 GIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITIC 184
           G+ V DN L+GG VA P  +       +  + + D N  L +DPR     + LGDG+ + 
Sbjct: 160 GLIVADNVLFGGRVADPSIRDAR----TQVRGVRDFNDYLLEDPRYDTVLLPLGDGLLLS 215

Query: 185 RR 186
           R+
Sbjct: 216 RK 217

Length = 219

>gnl|CDD|222236 pfam13578, Methyltransf_24, Methyltransferase domain

 Score = 53.4 bits (129), Expect = 9e-10
 Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 11/112 (9%)

Query: 25  IEIGVFTGYSLLLTALTIPE--DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 82
           +EIGV++G S L  A  + +   G++ +ID            ++KAG+  ++  +  ++L
Sbjct: 1   VEIGVYSGVSTLWLAQALKDNGLGRLYSIDPWPGAEAG--ANLRKAGLADRVRLLRGDSL 58

Query: 83  SVLDQLLKYSENEGSFDYAFVDADKDNYCNYH--ERLMKLLKVGGIAVYDNT 132
             L +L      +GS D  F+D D          E  + LL  GGI V+ + 
Sbjct: 59  EALARL-----PDGSIDLLFIDGDHTYEAVLADLELWLPLLAPGGIIVFHDI 105

This family appears to be a methyltransferase domain. Length = 105

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 39.6 bits (93), Expect = 9e-05
 Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 13/104 (12%)

Query: 25  IEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GVDHKINFIESEAL 82
           ++IG  TG   +  A   P   ++T +D++ E  E+     + A   +  +I F++ +A 
Sbjct: 6   LDIGCGTGSLAIELARLFP-GARVTGVDLSPEMLEL---ARENAKLALGPRITFVQGDAP 61

Query: 83  SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 126
             LD L         FD  F+     +     + L  LLK GG 
Sbjct: 62  DALDLL-------EGFDAVFIGGGGGDLLELLDALASLLKPGGR 98

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 8/111 (7%)

Query: 21  AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE 80
             K +++G  TGY   + A  +    ++  ID++ E  E      KK G +  + FI+ +
Sbjct: 4   GIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYE-NVEFIQGD 62

Query: 81  ALSVLDQLLKYSENEGSFDYAFVDADKDNYCN---YHERLMKLLKVGGIAV 128
              +    L     + SFD    +   ++  +     E ++++LK GG+ +
Sbjct: 63  IEELPQLQL----EDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLI 109

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

 Score = 38.0 bits (89), Expect = 0.001
 Identities = 25/124 (20%), Positives = 48/124 (38%), Gaps = 13/124 (10%)

Query: 6   PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII 65
            DAG ++A L  +    + +E G  +G      A  +  +G +T  ++  +  +     +
Sbjct: 81  KDAGYIVARL-GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENL 139

Query: 66  KKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD-ADKDNYCNYHERLMKLLKVG 124
            + G+  ++     +    +D        E   D  F+D  D  N     E +   LK G
Sbjct: 140 SEFGLGDRVTLKLGDVREGID--------EEDVDAVFLDLPDPWNVL---EHVSDALKPG 188

Query: 125 GIAV 128
           G+ V
Sbjct: 189 GVVV 192

Length = 256

>gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

 Score = 37.5 bits (87), Expect = 0.001
 Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 6/115 (5%)

Query: 16  LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKIN 75
           LRL      ++IG  TG   +  +L + E G++ A+D + +   +     +K GV + I 
Sbjct: 36  LRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIV 95

Query: 76  FIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130
            I+ EA  +L  +         FD  F+    +          +++K GG  V D
Sbjct: 96  LIKGEAPEILFTI------NEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVID 144

Length = 198

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	188
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	100.0
PLN02589	247	caffeoyl-CoA O-methyltransferase	100.0
PLN02476	278	O-methyltransferase	100.0
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	100.0
COG4122	219	Predicted O-methyltransferase [General function pr	100.0
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	100.0
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.8
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.79
PRK04457	262	spermidine synthase; Provisional	99.77
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.74
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.74
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.73
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.72
PLN03075	296	nicotianamine synthase; Provisional	99.72
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.71
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.71
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.71
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.71
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.7
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.7
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.7
PRK07402	196	precorrin-6B methylase; Provisional	99.7
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.7
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.68
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.68
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.67
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.67
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.67
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.66
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.65
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.65
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.65
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.64
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.64
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.63
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.63
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.63
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.63
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	99.63
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.62
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.62
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.62
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.62
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.61
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	99.61
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.61
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.61
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.6
PLN02244	340	tocopherol O-methyltransferase	99.6
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.6
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.6
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.6
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.6
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.59
COG4123	248	Predicted O-methyltransferase [General function pr	99.59
PRK00811	283	spermidine synthase; Provisional	99.58
PLN02366	308	spermidine synthase	99.58
PRK11207	197	tellurite resistance protein TehB; Provisional	99.57
PRK01581	374	speE spermidine synthase; Validated	99.57
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.57
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.57
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.57
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.57
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.57
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.56
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.56
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.55
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.55
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.55
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.55
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.54
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.54
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.54
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.53
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.53
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.53
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.53
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.52
PRK04266	226	fibrillarin; Provisional	99.52
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.51
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.51
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.51
PRK14968	188	putative methyltransferase; Provisional	99.5
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.5
PRK12335	287	tellurite resistance protein TehB; Provisional	99.5
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.49
PRK08317	241	hypothetical protein; Provisional	99.49
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.49
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.49
PRK06922	677	hypothetical protein; Provisional	99.49
PLN02336	475	phosphoethanolamine N-methyltransferase	99.49
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.48
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.48
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.48
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.48
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.47
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.47
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.47
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.47
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.47
COG2890	280	HemK Methylase of polypeptide chain release factor	99.47
PRK14967	223	putative methyltransferase; Provisional	99.47
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.46
PLN02823	336	spermine synthase	99.46
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	99.46
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.45
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.45
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.45
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.45
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.44
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.44
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.43
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	99.43
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.42
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.41
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.41
PRK03612	521	spermidine synthase; Provisional	99.41
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.4
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.4
KOG2904	328	consensus Predicted methyltransferase [General fun	99.4
PLN02490	340	MPBQ/MSBQ methyltransferase	99.4
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.4
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.39
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.38
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.38
PTZ00146	293	fibrillarin; Provisional	99.37
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.36
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.36
COG0742	187	N6-adenine-specific methylase [DNA replication, re	99.36
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.36
KOG4300	252	consensus Predicted methyltransferase [General fun	99.35
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.34
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.34
TIGR03438	301	probable methyltransferase. This model represents	99.34
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	99.33
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.33
PLN02336	475	phosphoethanolamine N-methyltransferase	99.33
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.33
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	99.33
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.33
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	99.29
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.29
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	99.28
TIGR00438	188	rrmJ cell division protein FtsJ.	99.27
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.27
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.26
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.26
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	99.24
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.24
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.23
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	99.23
PHA03411	279	putative methyltransferase; Provisional	99.22
KOG1271	227	consensus Methyltransferases [General function pre	99.22
PLN02672	1082	methionine S-methyltransferase	99.22
PRK06202	232	hypothetical protein; Provisional	99.22
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.22
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	99.21
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	99.21
PRK05785	226	hypothetical protein; Provisional	99.21
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	99.2
COG2265	432	TrmA SAM-dependent methyltransferases related to t	99.19
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.19
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.17
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	99.17
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	99.17
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.17
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	99.17
PHA03412	241	putative methyltransferase; Provisional	99.15
COG2520	341	Predicted methyltransferase [General function pred	99.14
KOG2899	288	consensus Predicted methyltransferase [General fun	99.14
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.14
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.14
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.13
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	99.12
COG2521	287	Predicted archaeal methyltransferase [General func	99.1
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.1
COG1041	347	Predicted DNA modification methylase [DNA replicat	99.1
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.09
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	99.08
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.05
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.05
PRK00536	262	speE spermidine synthase; Provisional	99.05
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	99.04
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	99.02
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	99.02
KOG2361	264	consensus Predicted methyltransferase [General fun	99.01
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.01
KOG2730	263	consensus Methylase [General function prediction o	99.0
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.99
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.96
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.94
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.93
KOG3010	261	consensus Methyltransferase [General function pred	98.92
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.91
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.9
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.88
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.87
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.84
PRK04148	134	hypothetical protein; Provisional	98.84
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	98.83
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	98.81
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.79
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.79
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.78
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.77
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.71
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	98.7
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	98.7
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.66
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.64
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.61
PRK10742	250	putative methyltransferase; Provisional	98.59
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	98.59
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.58
COG4262	508	Predicted spermidine synthase with an N-terminal m	98.55
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.51
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.49
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.48
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.47
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	98.47
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	98.43
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.41
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.41
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	98.4
PF13679	141	Methyltransf_32: Methyltransferase domain	98.4
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.39
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.38
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.37
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.34
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	98.32
COG2384	226	Predicted SAM-dependent methyltransferase [General	98.3
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.3
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	98.29
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	98.29
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.28
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.27
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	98.26
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.26
COG4076	252	Predicted RNA methylase [General function predicti	98.24
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.12
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	98.09
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.08
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	98.08
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.08
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	98.07
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	98.0
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.99
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.98
KOG3115	249	consensus Methyltransferase-like protein [General	97.93
COG3897	218	Predicted methyltransferase [General function pred	97.92
KOG3201	201	consensus Uncharacterized conserved protein [Funct	97.9
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.86
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	97.77
KOG2352	482	consensus Predicted spermine/spermidine synthase [	97.74
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.72
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.68
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	97.66
PHA01634	156	hypothetical protein	97.64
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.64
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.63
KOG2940	325	consensus Predicted methyltransferase [General fun	97.6
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.57
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	97.56
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	97.5
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	97.47
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	97.35
COG0286	489	HsdM Type I restriction-modification system methyl	97.33
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.22
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	97.21
KOG2671	421	consensus Putative RNA methylase [Replication, rec	97.18
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	97.17
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	97.15
KOG4058	199	consensus Uncharacterized conserved protein [Funct	97.14
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.11
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	97.04
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	97.0
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	96.97
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	96.89
COG3129	292	Predicted SAM-dependent methyltransferase [General	96.76
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	96.76
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	96.75
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	96.73
KOG1501	636	consensus Arginine N-methyltransferase [General fu	96.71
PRK11524	284	putative methyltransferase; Provisional	96.68
COG4798	238	Predicted methyltransferase [General function pred	96.63
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	96.57
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	96.54
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	96.43
COG4301	321	Uncharacterized conserved protein [Function unknow	96.42
KOG1227	351	consensus Putative methyltransferase [General func	96.37
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	96.27
PRK13699	227	putative methylase; Provisional	96.25
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.08
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	96.01
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	96.01
PRK11524	284	putative methyltransferase; Provisional	95.97
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	95.9
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	95.9
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.87
PRK13699	227	putative methylase; Provisional	95.85
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	95.79
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	95.71
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	95.7
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	95.61
PF04378	245	RsmJ: Ribosomal RNA small subunit methyltransferas	95.5
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	95.5
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	95.45
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	95.44
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	95.42
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	95.41
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	95.41
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	95.41
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	95.39
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	95.28
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	95.16
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	95.14
COG1565	370	Uncharacterized conserved protein [Function unknow	95.14
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	95.0
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	94.91
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	94.82
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	94.8
COG2961	279	ComJ Protein involved in catabolism of external DN	94.79
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	94.73
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	94.73
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	94.66
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	94.57
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	94.47
KOG2078	495	consensus tRNA modification enzyme [RNA processing	94.37
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	94.34
PLN02740	381	Alcohol dehydrogenase-like	94.27
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	94.26
PLN02827	378	Alcohol dehydrogenase-like	94.25
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	94.22
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	94.19
KOG1331	293	consensus Predicted methyltransferase [General fun	94.15
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	94.11
KOG0780	483	consensus Signal recognition particle, subunit Srp	93.99
KOG2360	413	consensus Proliferation-associated nucleolar prote	93.76
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	93.69
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	93.61
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	93.52
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	93.49
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	93.43
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	93.43
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	93.24
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	93.2
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	93.11
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	93.09
KOG3924	419	consensus Putative protein methyltransferase invol	92.89
COG3315	297	O-Methyltransferase involved in polyketide biosynt	92.79
COG1568	354	Predicted methyltransferases [General function pre	92.76
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	92.72
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	92.71
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	92.67
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	92.67
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	92.64
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	92.44
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	92.37
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	92.36
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	92.36
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	92.31
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	92.31
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	92.11
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	92.04
PLN02586	360	probable cinnamyl alcohol dehydrogenase	91.99
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	91.98
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	91.98
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	91.91
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	91.89
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	91.8
PRK08114	395	cystathionine beta-lyase; Provisional	91.78
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	91.78
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	91.69
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	91.63
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	91.58
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	91.54
KOG2912	419	consensus Predicted DNA methylase [Function unknow	91.45
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	91.44
COG1255	129	Uncharacterized protein conserved in archaea [Func	91.38
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	91.33
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	91.3
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	91.23
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	91.17
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	91.05
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	91.03
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	91.01
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	91.0
KOG2352	482	consensus Predicted spermine/spermidine synthase [	90.87
PLN02353	473	probable UDP-glucose 6-dehydrogenase	90.84
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.8
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	90.59
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	90.58
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	90.53
PRK09496	453	trkA potassium transporter peripheral membrane com	90.5
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	90.4
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	90.36
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	90.36
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	90.34
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	90.24
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	90.21
PRK03659	601	glutathione-regulated potassium-efflux system prot	90.18
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	90.18
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.02
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	90.01
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	89.96
PRK07417	279	arogenate dehydrogenase; Reviewed	89.91
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	89.89
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	89.81
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.75
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	89.75
PRK10669	558	putative cation:proton antiport protein; Provision	89.72
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	89.7
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	89.54
PF12242	78	Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2	89.51
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	89.45
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	89.45
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	89.42
PRK09496	453	trkA potassium transporter peripheral membrane com	89.31
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	89.26
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	89.14
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	89.01
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	88.99
PLN02256	304	arogenate dehydrogenase	88.82
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	88.82
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	88.79
PRK05967	395	cystathionine beta-lyase; Provisional	88.73
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	88.73
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	88.65
PLN02514	357	cinnamyl-alcohol dehydrogenase	88.62
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	88.53
PRK08324	681	short chain dehydrogenase; Validated	88.4
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	88.39
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	88.28
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	88.26
PF04072	183	LCM: Leucine carboxyl methyltransferase; InterPro:	88.17
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	88.16
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	87.99
PTZ00354	334	alcohol dehydrogenase; Provisional	87.94
PF08351	92	DUF1726: Domain of unknown function (DUF1726); Int	87.92
PRK07671	377	cystathionine beta-lyase; Provisional	87.89
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	87.87
PRK10083	339	putative oxidoreductase; Provisional	87.86
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	87.73
PTZ00357	1072	methyltransferase; Provisional	87.51
TIGR00497	501	hsdM type I restriction system adenine methylase (	87.48
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	87.46
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	87.43
PRK07582	366	cystathionine gamma-lyase; Validated	87.41
PRK08064	390	cystathionine beta-lyase; Provisional	87.28
PRK05939	397	hypothetical protein; Provisional	87.22
PRK08574	385	cystathionine gamma-synthase; Provisional	87.2
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	87.18
PRK06940	275	short chain dehydrogenase; Provisional	87.11
PRK08306	296	dipicolinate synthase subunit A; Reviewed	87.1
PRK03562	621	glutathione-regulated potassium-efflux system prot	87.05
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	87.03
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	86.99
PLN02494	477	adenosylhomocysteinase	86.73
PRK08655	437	prephenate dehydrogenase; Provisional	86.72
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	86.68
COG2130	340	Putative NADP-dependent oxidoreductases [General f	86.67
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	86.51
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	86.47
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	86.39
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	86.24
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	86.08
COG5379	414	BtaA S-adenosylmethionine:diacylglycerol 3-amino-3	86.06
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	85.76
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	85.74
KOG2920	282	consensus Predicted methyltransferase [General fun	85.65
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	85.36
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	85.29
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	85.23
PF03269	177	DUF268: Caenorhabditis protein of unknown function	85.22
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	85.21
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	85.16
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	85.1
PRK06223	307	malate dehydrogenase; Reviewed	85.09
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	85.08
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	85.0
PRK09028	394	cystathionine beta-lyase; Provisional	84.97
PRK07877	722	hypothetical protein; Provisional	84.83
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	84.81
PRK08507	275	prephenate dehydrogenase; Validated	84.74
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	84.72
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	84.68
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	84.63
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	84.54
PRK07680	273	late competence protein ComER; Validated	84.52
PRK05225	487	ketol-acid reductoisomerase; Validated	84.49
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	84.25
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	84.15
PRK07063	260	short chain dehydrogenase; Provisional	84.1
COG0569	225	TrkA K+ transport systems, NAD-binding component [	83.91
PRK06914	280	short chain dehydrogenase; Provisional	83.88
KOG0781	587	consensus Signal recognition particle receptor, al	83.81
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	83.57
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	83.57
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	83.43
PRK06234	400	methionine gamma-lyase; Provisional	83.26

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=100.00  E-value=8.6e-40  Score=241.84  Aligned_cols=179  Identities=45%  Similarity=0.812  Sum_probs=160.9

Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch
Q 029764            2 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   81 (188)
Q Consensus         2 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   81 (188)
                      |..+++++++|..+++..++++||||||++|++++++|+.++++++|+++|.+++.++.|++++++.|+.++++++.+|+
T Consensus        27 ~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda  106 (205)
T PF01596_consen   27 MSISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDA  106 (205)
T ss_dssp             GSHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-H
T ss_pred             CccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEecc
Confidence            67889999999999999999999999999999999999999888999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHH
Q 029764           82 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLN  161 (188)
Q Consensus        82 ~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  161 (188)
                      .+.++++.+.. ..++||+||+|+++.++..+++.+.++|++||+++++|++|+|.+..+....+      ....+++|+
T Consensus       107 ~~~l~~l~~~~-~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~------~~~~ir~f~  179 (205)
T PF01596_consen  107 LEVLPELANDG-EEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDP------KTVAIREFN  179 (205)
T ss_dssp             HHHHHHHHHTT-TTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSH------HHHHHHHHH
T ss_pred             HhhHHHHHhcc-CCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEccccccceecCccchhh------hHHHHHHHH
Confidence            99999876541 13589999999999999999999999999999999999999999998843221      455599999


Q ss_pred             HHhhcCCCeEEEEeecCCceEEEEEc
Q 029764          162 RSLADDPRVQLSHVALGDGITICRRI  187 (188)
Q Consensus       162 ~~~~~~~~~~~~~lp~~~G~~~~~~~  187 (188)
                      +++.++|+|+++++|+++|+++++||
T Consensus       180 ~~i~~d~~~~~~llpigdGl~l~~K~  205 (205)
T PF01596_consen  180 EYIANDPRFETVLLPIGDGLTLARKR  205 (205)
T ss_dssp             HHHHH-TTEEEEEECSTTEEEEEEE-
T ss_pred             HHHHhCCCeeEEEEEeCCeeEEEEEC
Confidence            99999999999999999999999996

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=100.00  E-value=3.7e-37  Score=233.27  Aligned_cols=186  Identities=57%  Similarity=1.011  Sum_probs=163.8

Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch
Q 029764            2 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   81 (188)
Q Consensus         2 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   81 (188)
                      |.++++++++|..+++..++++|||||+++|++++++|..++++++++++|.+++.++.|++++++.|+.++++++.+++
T Consensus        61 ~~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a  140 (247)
T PLN02589         61 MTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPA  140 (247)
T ss_pred             CccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccH
Confidence            56789999999999999999999999999999999999999878999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHH
Q 029764           82 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLN  161 (188)
Q Consensus        82 ~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  161 (188)
                      .+.++++.......++||+||+|+++..+..+++.+.++|++||+++++|++|.|.+.++.....+.........+++|+
T Consensus       141 ~e~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn  220 (247)
T PLN02589        141 LPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELN  220 (247)
T ss_pred             HHHHHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEEcCCCCCCcccCccccchhhhHHHHHHHHHHHH
Confidence            99998875321112689999999999999999999999999999999999999999887743221111110234688999


Q ss_pred             HHhhcCCCeEEEEeecCCceEEEEEc
Q 029764          162 RSLADDPRVQLSHVALGDGITICRRI  187 (188)
Q Consensus       162 ~~~~~~~~~~~~~lp~~~G~~~~~~~  187 (188)
                      +++.++|+|+++++|+|+|+++++|+
T Consensus       221 ~~v~~d~~~~~~llPigDGl~l~~k~  246 (247)
T PLN02589        221 KALAADPRIEICMLPVGDGITLCRRI  246 (247)
T ss_pred             HHHHhCCCEEEEEEEeCCccEEEEEe
Confidence            99999999999999999999999986

>PLN02476 O-methyltransferase

Probab=100.00  E-value=1.9e-36  Score=231.93  Aligned_cols=179  Identities=42%  Similarity=0.722  Sum_probs=162.9

Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch
Q 029764            2 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   81 (188)
Q Consensus         2 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   81 (188)
                      |..+++++++|..++...++++||||||++|++++++|..++++++++++|.+++.++.|++++++.|+.++++++.+|+
T Consensus       100 ~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA  179 (278)
T PLN02476        100 MQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLA  179 (278)
T ss_pred             cccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence            57789999999999999999999999999999999999998878899999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHH
Q 029764           82 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLN  161 (188)
Q Consensus        82 ~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  161 (188)
                      .+.++.+..+ ...++||+||+|+++..+..+++.+.++|++||+++++|++|.|.+.++.....      ...++++|+
T Consensus       180 ~e~L~~l~~~-~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~------~t~~ir~fn  252 (278)
T PLN02476        180 AESLKSMIQN-GEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDA------KTISIRNFN  252 (278)
T ss_pred             HHHHHHHHhc-ccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCH------HHHHHHHHH
Confidence            9998876422 113689999999999999999999999999999999999999999987753221      456799999


Q ss_pred             HHhhcCCCeEEEEeecCCceEEEEEc
Q 029764          162 RSLADDPRVQLSHVALGDGITICRRI  187 (188)
Q Consensus       162 ~~~~~~~~~~~~~lp~~~G~~~~~~~  187 (188)
                      +++.++|+++++++|+|+|+++++|+
T Consensus       253 ~~v~~d~~~~~~llPigDGl~i~~K~  278 (278)
T PLN02476        253 KKLMDDKRVSISMVPIGDGMTICRKR  278 (278)
T ss_pred             HHHhhCCCEEEEEEEeCCeeEEEEEC
Confidence            99999999999999999999999985

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=100.00  E-value=3.4e-36  Score=227.98  Aligned_cols=185  Identities=60%  Similarity=1.048  Sum_probs=166.0

Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch
Q 029764            2 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   81 (188)
Q Consensus         2 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   81 (188)
                      |.++++++++|..++...++++|||+|||+|+++++++..++++++++++|.+++.++.|++++++.++.++++++.+|+
T Consensus        50 ~~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda  129 (234)
T PLN02781         50 MEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDA  129 (234)
T ss_pred             cccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccH
Confidence            57789999999999999999999999999999999999998768899999999999999999999999998999999999


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHH
Q 029764           82 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLN  161 (188)
Q Consensus        82 ~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  161 (188)
                      .+.++.+... ...++||+||+|+.+..+..+++.+.++|+|||+++++|++|.|.+.++.....++.+. ....+++|+
T Consensus       130 ~~~L~~l~~~-~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~-~~~~ir~~~  207 (234)
T PLN02781        130 LSALDQLLNN-DPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRA-YRKALLEFN  207 (234)
T ss_pred             HHHHHHHHhC-CCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhH-HHHHHHHHH
Confidence            9988776432 01368999999999999999999999999999999999999999998886543344444 567899999


Q ss_pred             HHhhcCCCeEEEEeecCCceEEEEEcC
Q 029764          162 RSLADDPRVQLSHVALGDGITICRRIF  188 (188)
Q Consensus       162 ~~~~~~~~~~~~~lp~~~G~~~~~~~~  188 (188)
                      +++.++|+++++++|+|+|+++++|++
T Consensus       208 ~~i~~~~~~~~~~lp~gdG~~i~~k~~  234 (234)
T PLN02781        208 KLLASDPRVEISQISIGDGVTLCRRLV  234 (234)
T ss_pred             HHHhhCCCeEEEEEEeCCccEEEEEeC
Confidence            999999999999999999999999874

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=100.00  E-value=2.2e-36  Score=223.50  Aligned_cols=174  Identities=42%  Similarity=0.716  Sum_probs=159.7

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE-cchHHH
Q 029764            6 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSV   84 (188)
Q Consensus         6 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~-~d~~~~   84 (188)
                      ++++++|.+++...++++|||||++.|+|++|||..++.++++++||.+++.++.|++++++.|+.+++..+. +|+.+.
T Consensus        45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~  124 (219)
T COG4122          45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV  124 (219)
T ss_pred             hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence            8999999999999999999999999999999999999978899999999999999999999999999999989 699998


Q ss_pred             HHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHHHHh
Q 029764           85 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSL  164 (188)
Q Consensus        85 ~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (188)
                      +....     .++||+||+|+++..+.++++.+.++|+|||+++++|++++|.+..+..   +..++ ....++.|++++
T Consensus       125 l~~~~-----~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~---~~~~~-~~~~~~~~~~~~  195 (219)
T COG4122         125 LSRLL-----DGSFDLVFIDADKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSI---RDART-QVRGVRDFNDYL  195 (219)
T ss_pred             HHhcc-----CCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccc---hhHHH-HHHHHHHHHHHH
Confidence            87621     5899999999999999999999999999999999999999998887753   22233 556699999999


Q ss_pred             hcCCCeEEEEeecCCceEEEEEcC
Q 029764          165 ADDPRVQLSHVALGDGITICRRIF  188 (188)
Q Consensus       165 ~~~~~~~~~~lp~~~G~~~~~~~~  188 (188)
                      .++|+++.+++|+|+|+++++|++
T Consensus       196 ~~~~~~~t~~lP~gDGl~v~~k~~  219 (219)
T COG4122         196 LEDPRYDTVLLPLGDGLLLSRKRG  219 (219)
T ss_pred             hhCcCceeEEEecCCceEEEeecC
Confidence            999999999999999999999974

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=3.1e-34  Score=209.82  Aligned_cols=184  Identities=58%  Similarity=0.975  Sum_probs=167.4

Q ss_pred             CCCCcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcc
Q 029764            1 MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   80 (188)
Q Consensus         1 ~~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d   80 (188)
                      +|.++++.+++++.+++..+++++||||..+|+|++.+|..+|++++|+++|++++.++.+.+..+..|...++++++++
T Consensus        54 ~m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~  133 (237)
T KOG1663|consen   54 EMLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGP  133 (237)
T ss_pred             ceecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecc
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHH
Q 029764           81 ALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDL  160 (188)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  160 (188)
                      +.+.++++.+. .+.++||++|+|+++.++..+.+++.+++|+||+|+++|++|+|.+..|+...+++.+. +..+ -.+
T Consensus       134 a~esLd~l~~~-~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G~v~~p~~~~~~~~~~-~r~~-~~~  210 (237)
T KOG1663|consen  134 ALESLDELLAD-GESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVVDNVLWPGVVADPDVNTPVRGRS-IREA-LNL  210 (237)
T ss_pred             hhhhHHHHHhc-CCCCceeEEEEccchHHHHHHHHHHHhhcccccEEEEeccccCCcccCcccCCCcchhh-hhhh-hhh
Confidence            99999888765 25679999999999999999999999999999999999999999888876655544443 2222 489


Q ss_pred             HHHhhcCCCeEEEEeecCCceEEEEEc
Q 029764          161 NRSLADDPRVQLSHVALGDGITICRRI  187 (188)
Q Consensus       161 ~~~~~~~~~~~~~~lp~~~G~~~~~~~  187 (188)
                      +..+..+|+++.+++|+|+|+++++|+
T Consensus       211 n~~l~~D~rV~~s~~~igdG~~i~~k~  237 (237)
T KOG1663|consen  211 NKKLARDPRVYISLLPIGDGITICRKR  237 (237)
T ss_pred             hhHhccCcceeeEeeeccCceeeeccC
Confidence            999999999999999999999999985

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.80  E-value=4.4e-19  Score=119.69  Aligned_cols=104  Identities=22%  Similarity=0.374  Sum_probs=87.2

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   99 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   99 (188)
                      |+.+|||+|||+|..+..+++..+ +.+++++|++|++++.+++++...+..++++++++|+ ......      .+.||
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~------~~~~D   72 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFP-GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDF------LEPFD   72 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTT------SSCEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCccc------CCCCC
Confidence            567999999999999999999655 8899999999999999999997777788999999999 332222      46899


Q ss_pred             EEEEeC-Ccc------chHHHHHHHHhccCcCeEEEEec
Q 029764          100 YAFVDA-DKD------NYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus       100 ~i~id~-~~~------~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      +|++.. ...      ....+++.+.+.|+|||+++++.
T Consensus        73 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   73 LVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             EEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            999987 222      23567899999999999999864

...

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.79  E-value=1e-17  Score=120.22  Aligned_cols=119  Identities=26%  Similarity=0.276  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029764            6 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   85 (188)
Q Consensus         6 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   85 (188)
                      ++.-.+.-..+...++.+++|||||+|..++.++...| .+++++||-++++++..++|++++++ ++++++.+++.+.+
T Consensus        20 ~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p-~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L   97 (187)
T COG2242          20 EEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGP-SGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEAL   97 (187)
T ss_pred             HHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhh
Confidence            33333434445677788999999999999999996555 89999999999999999999999995 57999999999988


Q ss_pred             HHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           86 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        86 ~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      +.+       .++|.||+.+. ......++.++..|++||.+|.+-...
T Consensus        98 ~~~-------~~~daiFIGGg-~~i~~ile~~~~~l~~ggrlV~naitl  138 (187)
T COG2242          98 PDL-------PSPDAIFIGGG-GNIEEILEAAWERLKPGGRLVANAITL  138 (187)
T ss_pred             cCC-------CCCCEEEECCC-CCHHHHHHHHHHHcCcCCeEEEEeecH
Confidence            753       48999999988 788999999999999999999986553

>PRK04457 spermidine synthase; Provisional

Probab=99.77  E-value=5e-17  Score=125.24  Aligned_cols=115  Identities=18%  Similarity=0.237  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029764            9 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   88 (188)
Q Consensus         9 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   88 (188)
                      ..++..+....++++|||||||+|..+.+++...+ +.+++++|++|++++.|++++...+..++++++.+|+.+++...
T Consensus        55 ~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~  133 (262)
T PRK04457         55 RAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH  133 (262)
T ss_pred             HHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC
Confidence            33445555556788999999999999999999886 88999999999999999999876554568999999999887653


Q ss_pred             hhcccCCCceeEEEEeCCccc-------hHHHHHHHHhccCcCeEEEEe
Q 029764           89 LKYSENEGSFDYAFVDADKDN-------YCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        89 ~~~~~~~~~~D~i~id~~~~~-------~~~~~~~~~~~L~~gG~lv~~  130 (188)
                            .++||+|++|.....       ..++++.+.+.|+|||+++++
T Consensus       134 ------~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin  176 (262)
T PRK04457        134 ------RHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN  176 (262)
T ss_pred             ------CCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence                  468999999963221       368999999999999999996

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.74  E-value=7.7e-17  Score=119.52  Aligned_cols=110  Identities=25%  Similarity=0.356  Sum_probs=94.1

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      ...++.+|||+|||+|..++.+++..++.++|+++|.++++++.++++++.+++.+++.++.+|..+.++..      .+
T Consensus        37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~------~~  110 (198)
T PRK00377         37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI------NE  110 (198)
T ss_pred             CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc------CC
Confidence            455778999999999999999988765468999999999999999999999886678999999987765543      36


Q ss_pred             ceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764           97 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        97 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      .||.||+......+..+++.+.+.|+|||.++++..
T Consensus       111 ~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  146 (198)
T PRK00377        111 KFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAI  146 (198)
T ss_pred             CCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEee
Confidence            899999987666778899999999999999998543

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.74  E-value=6.3e-17  Score=110.80  Aligned_cols=116  Identities=23%  Similarity=0.294  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764            7 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   86 (188)
Q Consensus         7 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   86 (188)
                      +....+...+...+..+|||+|||+|..+..+++..+ .++++++|+++.+++.++++++..+.. +++++.+|.....+
T Consensus         6 ~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~   83 (124)
T TIGR02469         6 EVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALE   83 (124)
T ss_pred             HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccCh
Confidence            3334344444555667999999999999999999877 689999999999999999999888765 58888888764333


Q ss_pred             HHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           87 QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        87 ~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ..      ..+||.|+++........+++.+.+.|+|||.+++.
T Consensus        84 ~~------~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~  121 (124)
T TIGR02469        84 DS------LPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLN  121 (124)
T ss_pred             hh------cCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEE
Confidence            22      368999999876666778999999999999999985

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.73  E-value=3e-16  Score=115.33  Aligned_cols=113  Identities=27%  Similarity=0.298  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029764            9 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   88 (188)
Q Consensus         9 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   88 (188)
                      ..++...+...++.+|||+|||+|..+..+++..+ +.+++++|+++++++.++++++..++. +++++.+|+...   +
T Consensus        20 r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~~---~   94 (187)
T PRK08287         20 RALALSKLELHRAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPIE---L   94 (187)
T ss_pred             HHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchhh---c
Confidence            33333344556778999999999999999998876 789999999999999999999888764 589999887421   1


Q ss_pred             hhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764           89 LKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        89 ~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                            .++||+|++++.......+++.+.+.|+|||.+++...
T Consensus        95 ------~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~  132 (187)
T PRK08287         95 ------PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFI  132 (187)
T ss_pred             ------CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEe
Confidence                  35799999987666678889999999999999998653

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.72  E-value=8.1e-17  Score=120.01  Aligned_cols=107  Identities=21%  Similarity=0.314  Sum_probs=87.8

Q ss_pred             HHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           15 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        15 l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      .+...++.+|||+|||+|+.+..+++..++.++|+++|+++++++.+++++...++.++++++.+|+.+.++.       
T Consensus        67 ~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-------  139 (205)
T PRK13944         67 LIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-------  139 (205)
T ss_pred             hcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-------
Confidence            3345566799999999999999999887656799999999999999999999988877899999998654332       


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      ..+||+|+++......   .+.+.+.|++||.+++..
T Consensus       140 ~~~fD~Ii~~~~~~~~---~~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        140 HAPFDAIIVTAAASTI---PSALVRQLKDGGVLVIPV  173 (205)
T ss_pred             CCCccEEEEccCcchh---hHHHHHhcCcCcEEEEEE
Confidence            3689999998754433   356789999999998853

>PLN03075 nicotianamine synthase; Provisional

Probab=99.72  E-value=1.2e-16  Score=123.57  Aligned_cols=118  Identities=14%  Similarity=0.195  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccch-HHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHh-cCCCCcEEEEEcchHH
Q 029764            6 PDAGQLMAMLLRLVNAKKTIEIGVFTG-YSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK-AGVDHKINFIESEALS   83 (188)
Q Consensus         6 ~~~~~~l~~l~~~~~~~~vLeiG~g~G-~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-~~~~~~~~~~~~d~~~   83 (188)
                      +..+++|..+... ++++|+|||||.| .+++.++....++++++++|.++++++.|++.++. .++.++++|+.+|+.+
T Consensus       110 ~lE~~~L~~~~~~-~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~  188 (296)
T PLN03075        110 KLEFDLLSQHVNG-VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMD  188 (296)
T ss_pred             HHHHHHHHHhhcC-CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhh
Confidence            4556666665555 8899999999955 55666665444489999999999999999999964 7888899999999987


Q ss_pred             HHHHHhhcccCCCceeEEEEeC----CccchHHHHHHHHhccCcCeEEEEec
Q 029764           84 VLDQLLKYSENEGSFDYAFVDA----DKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        84 ~~~~~~~~~~~~~~~D~i~id~----~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      ..+.       .+.||+||++.    .+......++++.+.|+|||++++-.
T Consensus       189 ~~~~-------l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        189 VTES-------LKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             cccc-------cCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence            4322       37899999985    34778899999999999999999975

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.71  E-value=2.3e-16  Score=115.52  Aligned_cols=103  Identities=18%  Similarity=0.262  Sum_probs=88.2

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..++.+|||+|||+|..++.++...+ +++|+++|.++++++.|+++.+..++.+ ++++++|+.+...        .++
T Consensus        43 l~~g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~--------~~~  112 (187)
T PRK00107         43 LPGGERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQ--------EEK  112 (187)
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCC--------CCC
Confidence            33478999999999999999998766 7899999999999999999999998765 9999999876421        368


Q ss_pred             eeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           98 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        98 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      ||+|++.. ..++..+++.+.+.|+|||.+++..
T Consensus       113 fDlV~~~~-~~~~~~~l~~~~~~LkpGG~lv~~~  145 (187)
T PRK00107        113 FDVVTSRA-VASLSDLVELCLPLLKPGGRFLALK  145 (187)
T ss_pred             ccEEEEcc-ccCHHHHHHHHHHhcCCCeEEEEEe
Confidence            99999975 3466789999999999999999863

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.71  E-value=1.3e-16  Score=120.04  Aligned_cols=109  Identities=20%  Similarity=0.334  Sum_probs=95.6

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      ...++.+|||+|||||-.+..+++..+ .++|+++|+++.|++.+++.+.+.+..+ ++++++|+.+. | +     ++.
T Consensus        48 ~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~L-P-f-----~D~  118 (238)
T COG2226          48 GIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENL-P-F-----PDN  118 (238)
T ss_pred             CCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhC-C-C-----CCC
Confidence            334789999999999999999999987 8999999999999999999999888776 99999999664 3 3     368


Q ss_pred             ceeEEEEeC---CccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           97 SFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        97 ~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      +||++.+..   +..++...++++.|+|||||.+++.+...
T Consensus       119 sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~  159 (238)
T COG2226         119 SFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSK  159 (238)
T ss_pred             ccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence            999998874   56688999999999999999999987765

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.71  E-value=1.5e-16  Score=116.27  Aligned_cols=103  Identities=22%  Similarity=0.322  Sum_probs=87.5

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      ...++.+|||+|||+|..+..++...+ +++|+++|.++++++.++++.++.++. +++++++|+.+..        ..+
T Consensus        39 ~~~~~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~--------~~~  108 (181)
T TIGR00138        39 EYLDGKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQ--------HEE  108 (181)
T ss_pred             HhcCCCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhcc--------ccC
Confidence            344688999999999999999987665 689999999999999999999988875 5999999987641        137


Q ss_pred             ceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           97 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        97 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      +||+|++++ ..++..+++.+.++|+|||.+++.
T Consensus       109 ~fD~I~s~~-~~~~~~~~~~~~~~LkpgG~lvi~  141 (181)
T TIGR00138       109 QFDVITSRA-LASLNVLLELTLNLLKVGGYFLAY  141 (181)
T ss_pred             CccEEEehh-hhCHHHHHHHHHHhcCCCCEEEEE
Confidence            899999986 556778889999999999999975

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.71  E-value=8.7e-17  Score=121.73  Aligned_cols=112  Identities=20%  Similarity=0.294  Sum_probs=83.3

Q ss_pred             HHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           15 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        15 l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      ++...++.+|||+|||+|..+..+++...+.++|+++|+++++++.|++++...+.. +++++++|+.+. + +     .
T Consensus        42 ~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~l-p-~-----~  113 (233)
T PF01209_consen   42 LLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDL-P-F-----P  113 (233)
T ss_dssp             HHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB----S------
T ss_pred             ccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHh-c-C-----C
Confidence            345667789999999999999999998876789999999999999999999988765 799999999765 2 2     2


Q ss_pred             CCceeEEEEeC---CccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           95 EGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        95 ~~~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      +++||+|++..   +..+....++++.++|||||.+++-+...
T Consensus       114 d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~  156 (233)
T PF01209_consen  114 DNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSK  156 (233)
T ss_dssp             TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             CCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccC
Confidence            58999999874   34567889999999999999999877654

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.70  E-value=1.8e-16  Score=118.67  Aligned_cols=115  Identities=27%  Similarity=0.376  Sum_probs=91.8

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029764            5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   84 (188)
Q Consensus         5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   84 (188)
                      .|.....+...+...++.+|||||||+|+.+..+++...++++|+++|+++++++.++++++..++. +++++++|+...
T Consensus        61 ~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-~v~~~~gd~~~~  139 (212)
T PRK13942         61 AIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-NVEVIVGDGTLG  139 (212)
T ss_pred             cHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccC
Confidence            3444444555556778899999999999999999988765689999999999999999999988864 699999998654


Q ss_pred             HHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           85 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        85 ~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      .+.       .++||+|++++.....   .+.+.+.|+|||.+++.
T Consensus       140 ~~~-------~~~fD~I~~~~~~~~~---~~~l~~~LkpgG~lvi~  175 (212)
T PRK13942        140 YEE-------NAPYDRIYVTAAGPDI---PKPLIEQLKDGGIMVIP  175 (212)
T ss_pred             CCc-------CCCcCEEEECCCcccc---hHHHHHhhCCCcEEEEE
Confidence            221       4789999998755443   34567889999999884

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=1.2e-16  Score=117.08  Aligned_cols=111  Identities=23%  Similarity=0.319  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029764            6 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   85 (188)
Q Consensus         6 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   85 (188)
                      |.....|-.++...++.+|||||||+||.+.-||+..   .+|+++|..++..+.|+++++..|+.+ +.++++|...-.
T Consensus        58 P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~gDG~~G~  133 (209)
T COG2518          58 PHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYEN-VTVRHGDGSKGW  133 (209)
T ss_pred             cHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEECCcccCC
Confidence            3344444446678888999999999999999999974   499999999999999999999999876 999999987654


Q ss_pred             HHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           86 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        86 ~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      +.       ...||.|++.+......+   .+.+.|++||.+++.
T Consensus       134 ~~-------~aPyD~I~Vtaaa~~vP~---~Ll~QL~~gGrlv~P  168 (209)
T COG2518         134 PE-------EAPYDRIIVTAAAPEVPE---ALLDQLKPGGRLVIP  168 (209)
T ss_pred             CC-------CCCcCEEEEeeccCCCCH---HHHHhcccCCEEEEE
Confidence            43       479999999876555433   356788999999985

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.70  E-value=2.3e-16  Score=118.40  Aligned_cols=113  Identities=27%  Similarity=0.349  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764            7 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   86 (188)
Q Consensus         7 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   86 (188)
                      .....+...+...++.+|||||||+|+.+..+++..+.+++|+++|+++++++.|+++++..++ ++++++++|+.+..+
T Consensus        64 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~  142 (215)
T TIGR00080        64 HMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWE  142 (215)
T ss_pred             HHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCc
Confidence            3333444445677888999999999999999999876567899999999999999999999887 469999999865432


Q ss_pred             HHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           87 QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        87 ~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      .       ..+||+|+++......   .+.+.+.|+|||.+++.
T Consensus       143 ~-------~~~fD~Ii~~~~~~~~---~~~~~~~L~~gG~lv~~  176 (215)
T TIGR00080       143 P-------LAPYDRIYVTAAGPKI---PEALIDQLKEGGILVMP  176 (215)
T ss_pred             c-------cCCCCEEEEcCCcccc---cHHHHHhcCcCcEEEEE
Confidence            2       3689999998755443   45577899999999984

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.70  E-value=7.6e-16  Score=114.03  Aligned_cols=121  Identities=24%  Similarity=0.269  Sum_probs=96.9

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029764            4 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   83 (188)
Q Consensus         4 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   83 (188)
                      +.++...++...+...++.+|||+|||+|..+..++...+ +++++++|.++++++.++++++..++. +++++.+|+.+
T Consensus        24 t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d~~~  101 (196)
T PRK07402         24 TKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGSAPE  101 (196)
T ss_pred             CHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECchHH
Confidence            4556666555566666778999999999999999987655 689999999999999999999988874 69999999876


Q ss_pred             HHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           84 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        84 ~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      .++.+      ...+|.++++.. .....+++.+.++|+|||.+++....
T Consensus       102 ~~~~~------~~~~d~v~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~~  144 (196)
T PRK07402        102 CLAQL------APAPDRVCIEGG-RPIKEILQAVWQYLKPGGRLVATASS  144 (196)
T ss_pred             HHhhC------CCCCCEEEEECC-cCHHHHHHHHHHhcCCCeEEEEEeec
Confidence            54433      245788888753 34578899999999999999987543

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.70  E-value=2.2e-16  Score=112.26  Aligned_cols=108  Identities=27%  Similarity=0.387  Sum_probs=89.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .+..+|||+|||+|..+..++....++.+++++|+++++++.|++.++..++. +++++++|..+ ++...     .++|
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~-l~~~~-----~~~~   74 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIED-LPQEL-----EEKF   74 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTC-GCGCS-----STTE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhc-ccccc-----CCCe
Confidence            45679999999999999999965544889999999999999999999999887 79999999987 43210     1689


Q ss_pred             eEEEEeCC---ccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           99 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        99 D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      |+|++...   ..+....++.+.++|+++|.+++.+..
T Consensus        75 D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   75 DIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             EEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             eEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            99999853   345567899999999999999998766

...

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.68  E-value=3.8e-15  Score=116.13  Aligned_cols=118  Identities=14%  Similarity=0.280  Sum_probs=93.3

Q ss_pred             CcHHHHHHHHHHHH----HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc
Q 029764            4 TAPDAGQLMAMLLR----LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   79 (188)
Q Consensus         4 ~~~~~~~~l~~l~~----~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~   79 (188)
                      ..+++..++...+.    ..++.+|||+|||+|..++.++...+ +.+++++|+++++++.|++|++.+++.++++++++
T Consensus       101 pr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~  179 (284)
T TIGR03533       101 PRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQS  179 (284)
T ss_pred             CCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence            34566677766543    13457999999999999999999876 78999999999999999999999988778999999


Q ss_pred             chHHHHHHHhhcccCCCceeEEEEeCCc----------------------------cchHHHHHHHHhccCcCeEEEEe
Q 029764           80 EALSVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        80 d~~~~~~~~~~~~~~~~~~D~i~id~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      |..+.++        ..+||+|+++.+.                            ..+..++..+.+.|++||.+++.
T Consensus       180 D~~~~~~--------~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e  250 (284)
T TIGR03533       180 DLFAALP--------GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE  250 (284)
T ss_pred             chhhccC--------CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            9865321        3579999987321                            11245677788999999999985

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.68  E-value=1.2e-15  Score=117.43  Aligned_cols=103  Identities=18%  Similarity=0.220  Sum_probs=87.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++.+|||+|||+|..+..++..   +.+|+++|+++++++.|++++...++.++++++++|+.+..+..      .++|
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~------~~~f  113 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL------ETPV  113 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc------CCCC
Confidence            35679999999999999999985   57999999999999999999998888778999999997753322      4789


Q ss_pred             eEEEEeCC---ccchHHHHHHHHhccCcCeEEEEe
Q 029764           99 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        99 D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      |+|++...   ..+...+++.+.++|||||.+++.
T Consensus       114 D~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~  148 (255)
T PRK11036        114 DLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLM  148 (255)
T ss_pred             CEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence            99998742   345678899999999999999764

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.67  E-value=2.8e-15  Score=123.35  Aligned_cols=160  Identities=23%  Similarity=0.279  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764            7 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   86 (188)
Q Consensus         7 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   86 (188)
                      ....++..++...++.+|||+|||+|..+..++......++|+++|+++++++.++++++.+|+.+ ++++++|+.+...
T Consensus       239 ~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~~~  317 (434)
T PRK14901        239 RSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNLLE  317 (434)
T ss_pred             HHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhccc
Confidence            344555666666778899999999999999999987656899999999999999999999999864 9999999876431


Q ss_pred             HHhhcccCCCceeEEEEeCCccc-------------------------hHHHHHHHHhccCcCeEEEEeccccCccccCC
Q 029764           87 QLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVP  141 (188)
Q Consensus        87 ~~~~~~~~~~~~D~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~  141 (188)
                      ....   ..++||.|++|.+.+.                         ..++++.+++.|||||.+|.......     +
T Consensus       318 ~~~~---~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~-----~  389 (434)
T PRK14901        318 LKPQ---WRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH-----P  389 (434)
T ss_pred             cccc---ccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC-----h
Confidence            1100   1368999999853211                         24678888999999999988655531     1


Q ss_pred             CCCCCCCcccchHHHHHHHHHHhhcCCCeEEE-----Eeec---CCceEEEEEc
Q 029764          142 EEQVPDHFRGSSRQAILDLNRSLADDPRVQLS-----HVAL---GDGITICRRI  187 (188)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~lp~---~~G~~~~~~~  187 (188)
                      +++            ...+...+..+|+|+..     ++|-   .+|+-+++-+
T Consensus       390 ~En------------e~~v~~~l~~~~~~~~~~~~~~~~P~~~~~dGfF~a~l~  431 (434)
T PRK14901        390 AEN------------EAQIEQFLARHPDWKLEPPKQKIWPHRQDGDGFFMAVLR  431 (434)
T ss_pred             hhH------------HHHHHHHHHhCCCcEecCCCCccCCCCCCCCcEEEEEEE
Confidence            111            33444445667888654     3453   3888888754

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.67  E-value=1.7e-16  Score=117.97  Aligned_cols=116  Identities=22%  Similarity=0.335  Sum_probs=88.2

Q ss_pred             CCcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchH
Q 029764            3 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   82 (188)
Q Consensus         3 ~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   82 (188)
                      +.+...+++++.+ ...++.+|||||||+|+.+..++....+.++|+++|.+++..+.|+++++..++. ++.++++|..
T Consensus        56 s~P~~~a~~l~~L-~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~  133 (209)
T PF01135_consen   56 SAPSMVARMLEAL-DLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGS  133 (209)
T ss_dssp             --HHHHHHHHHHT-TC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GG
T ss_pred             hHHHHHHHHHHHH-hcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchh
Confidence            3344556666654 5888899999999999999999988765678999999999999999999999876 6999999987


Q ss_pred             HHHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           83 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        83 ~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      .-.+.       ..+||.|++.+......   ..+.+.|++||.||+.
T Consensus       134 ~g~~~-------~apfD~I~v~~a~~~ip---~~l~~qL~~gGrLV~p  171 (209)
T PF01135_consen  134 EGWPE-------EAPFDRIIVTAAVPEIP---EALLEQLKPGGRLVAP  171 (209)
T ss_dssp             GTTGG-------G-SEEEEEESSBBSS-----HHHHHTEEEEEEEEEE
T ss_pred             hcccc-------CCCcCEEEEeeccchHH---HHHHHhcCCCcEEEEE
Confidence            65433       37899999987655433   3466789999999984

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.67  E-value=9.6e-16  Score=111.02  Aligned_cols=111  Identities=23%  Similarity=0.386  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029764            9 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   88 (188)
Q Consensus         9 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   88 (188)
                      .++|...+...+..+|||+|||+|..++.+++..+ ..+++++|+++.+++.++++++.+++.+ ++++..|..+..+  
T Consensus        20 t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~--   95 (170)
T PF05175_consen   20 TRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALP--   95 (170)
T ss_dssp             HHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCC--
T ss_pred             HHHHHHHHhhccCCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccccc--
Confidence            33454444554788999999999999999999877 6789999999999999999999999877 9999999876432  


Q ss_pred             hhcccCCCceeEEEEeCCc----c----chHHHHHHHHhccCcCeEEEE
Q 029764           89 LKYSENEGSFDYAFVDADK----D----NYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        89 ~~~~~~~~~~D~i~id~~~----~----~~~~~~~~~~~~L~~gG~lv~  129 (188)
                            .++||+|+++.+.    .    ....+++.+.+.|+|||.+++
T Consensus        96 ------~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l  138 (170)
T PF05175_consen   96 ------DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFL  138 (170)
T ss_dssp             ------TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ------ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence                  3799999998532    1    246788888999999998865

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.66  E-value=2.2e-15  Score=114.17  Aligned_cols=109  Identities=18%  Similarity=0.397  Sum_probs=89.5

Q ss_pred             HHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764           16 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      +...++.+|||+|||+|..+..+++..+++++++++|+++++++.+++++...++ ++++++++|+.+..  +     ..
T Consensus        41 l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~--~-----~~  112 (231)
T TIGR02752        41 MNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELP--F-----DD  112 (231)
T ss_pred             cCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCC--C-----CC
Confidence            3445677999999999999999998875578999999999999999999887776 46999999986531  1     14


Q ss_pred             CceeEEEEeC---CccchHHHHHHHHhccCcCeEEEEecc
Q 029764           96 GSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        96 ~~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      ++||+|++..   +..++..+++++.++|+|||.+++.+.
T Consensus       113 ~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~  152 (231)
T TIGR02752       113 NSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET  152 (231)
T ss_pred             CCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence            7899999863   345667889999999999999988654

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.65  E-value=1.7e-15  Score=113.45  Aligned_cols=114  Identities=18%  Similarity=0.271  Sum_probs=99.5

Q ss_pred             HHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029764           10 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   89 (188)
Q Consensus        10 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   89 (188)
                      .++..-....++.+|+|.|+|+|..+.+||....+.++|+++|+.++.++.|++|++..++.+++++..+|..+...   
T Consensus        84 ~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~---  160 (256)
T COG2519          84 GYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID---  160 (256)
T ss_pred             HHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc---
Confidence            34455567889999999999999999999998877899999999999999999999999999889999999877533   


Q ss_pred             hcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           90 KYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        90 ~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                           ...||.||+|.  ++++++++.+...|+|||.+++-.+.
T Consensus       161 -----~~~vDav~LDm--p~PW~~le~~~~~Lkpgg~~~~y~P~  197 (256)
T COG2519         161 -----EEDVDAVFLDL--PDPWNVLEHVSDALKPGGVVVVYSPT  197 (256)
T ss_pred             -----ccccCEEEEcC--CChHHHHHHHHHHhCCCcEEEEEcCC
Confidence                 35899999985  56689999999999999999985444

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.65  E-value=1.9e-14  Score=118.17  Aligned_cols=121  Identities=21%  Similarity=0.314  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764            7 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   86 (188)
Q Consensus         7 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   86 (188)
                      ..++++..++...++.+|||+|||+|..+..++..+.++++|+++|+++++++.+++++++.|+. +++++++|+.+...
T Consensus       224 ~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~  302 (431)
T PRK14903        224 ESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTE  302 (431)
T ss_pred             HHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhh
Confidence            44556666677778889999999999999999998765789999999999999999999999985 48999999876422


Q ss_pred             HHhhcccCCCceeEEEEeCCcc-------------------------chHHHHHHHHhccCcCeEEEEecccc
Q 029764           87 QLLKYSENEGSFDYAFVDADKD-------------------------NYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        87 ~~~~~~~~~~~~D~i~id~~~~-------------------------~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      ..      .++||.|++|.+..                         ...+.++.+++.|+|||.+++.....
T Consensus       303 ~~------~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~  369 (431)
T PRK14903        303 YV------QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV  369 (431)
T ss_pred             hh------hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            22      36799999985331                         12456788899999999999876664

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.65  E-value=2.3e-15  Score=111.95  Aligned_cols=105  Identities=23%  Similarity=0.331  Sum_probs=85.3

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   99 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   99 (188)
                      ++.+|||+|||+|..+..++...+ ..+++++|+++++++.+++++...++ .++.++++|+.+.++...    ..++||
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~----~~~~~D  113 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMF----PDGSLD  113 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHc----Cccccc
Confidence            567999999999999999998876 67999999999999999999988776 469999999844444321    246899


Q ss_pred             EEEEeCCc---c--------chHHHHHHHHhccCcCeEEEEe
Q 029764          100 YAFVDADK---D--------NYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus       100 ~i~id~~~---~--------~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      .|++....   .        ....+++.+.+.|+|||.+++.
T Consensus       114 ~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~  155 (202)
T PRK00121        114 RIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFA  155 (202)
T ss_pred             eEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEE
Confidence            99985321   1        1467899999999999999885

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.64  E-value=2.6e-15  Score=115.75  Aligned_cols=111  Identities=14%  Similarity=0.186  Sum_probs=87.6

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHh--cCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK--AGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      ...++.+|||+|||+|..+..+++..++.++|+++|+++++++.|+++...  ....++++++++|+.+. + +     .
T Consensus        70 ~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p-~-----~  142 (261)
T PLN02233         70 GAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-P-F-----D  142 (261)
T ss_pred             CCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-C-C-----C
Confidence            455677999999999999999998765467999999999999999877532  22235799999998653 1 1     2


Q ss_pred             CCceeEEEEeC---CccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           95 EGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        95 ~~~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      .++||+|++..   +..+...++.++.++|||||.+++.+...
T Consensus       143 ~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~  185 (261)
T PLN02233        143 DCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNK  185 (261)
T ss_pred             CCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence            47899998863   34567889999999999999998876553

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.64  E-value=9.8e-15  Score=120.54  Aligned_cols=122  Identities=21%  Similarity=0.273  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029764            6 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   85 (188)
Q Consensus         6 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   85 (188)
                      .+...++...+...++.+|||+|||+|..+..++....+.++|+++|+++++++.+++++++.|+.+ ++++++|+.+..
T Consensus       236 d~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~  314 (444)
T PRK14902        236 DESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDARKVH  314 (444)
T ss_pred             ChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCccccc
Confidence            4456666666777778899999999999999999987547899999999999999999999999865 999999987653


Q ss_pred             HHHhhcccCCCceeEEEEeCCccc-------------------------hHHHHHHHHhccCcCeEEEEecccc
Q 029764           86 DQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        86 ~~~~~~~~~~~~~D~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      ..+      .++||+|++|++...                         ...+++.+.++|+|||.++......
T Consensus       315 ~~~------~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~  382 (444)
T PRK14902        315 EKF------AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI  382 (444)
T ss_pred             chh------cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence            333      268999999964210                         1356888889999999999765443

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.63  E-value=3.2e-14  Score=111.96  Aligned_cols=118  Identities=15%  Similarity=0.284  Sum_probs=93.0

Q ss_pred             CcHHHHHHHHHHHH-H-c--CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc
Q 029764            4 TAPDAGQLMAMLLR-L-V--NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   79 (188)
Q Consensus         4 ~~~~~~~~l~~l~~-~-~--~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~   79 (188)
                      ..+++..++...+. . .  ++.+|||+|||+|..++.++...+ +.+++++|+++++++.|++|++.+++.++++++++
T Consensus       113 pr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~  191 (307)
T PRK11805        113 PRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIES  191 (307)
T ss_pred             CCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEEC
Confidence            34566677665543 1 2  236899999999999999999876 78999999999999999999999888778999999


Q ss_pred             chHHHHHHHhhcccCCCceeEEEEeCCc----------------------------cchHHHHHHHHhccCcCeEEEEe
Q 029764           80 EALSVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        80 d~~~~~~~~~~~~~~~~~~D~i~id~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      |..+.++        .++||+|+++.+.                            ..+..+++.+.+.|+|||.+++.
T Consensus       192 D~~~~l~--------~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E  262 (307)
T PRK11805        192 DLFAALP--------GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE  262 (307)
T ss_pred             chhhhCC--------CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            9865432        2579999987311                            11346678888999999999985

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.63  E-value=3.5e-15  Score=115.39  Aligned_cols=109  Identities=22%  Similarity=0.331  Sum_probs=85.0

Q ss_pred             HHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764           16 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      +.+.++.+|||||||.|..+..+|+..  +++|+++.++++..+.+++.+++.|+.+++++...|..+.          .
T Consensus        58 ~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~----------~  125 (273)
T PF02353_consen   58 LGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL----------P  125 (273)
T ss_dssp             TT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------------
T ss_pred             hCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc----------C
Confidence            457788899999999999999999985  6899999999999999999999999999999999997654          3


Q ss_pred             CceeEEEEeC-----CccchHHHHHHHHhccCcCeEEEEeccccCc
Q 029764           96 GSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTLWGG  136 (188)
Q Consensus        96 ~~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  136 (188)
                      .+||.|+.-.     ...++..+++.+.++|+|||.++++......
T Consensus       126 ~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~  171 (273)
T PF02353_consen  126 GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRD  171 (273)
T ss_dssp             -S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--
T ss_pred             CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence            5899998764     2356789999999999999999998766533

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.63  E-value=6.4e-15  Score=112.95  Aligned_cols=113  Identities=18%  Similarity=0.227  Sum_probs=97.9

Q ss_pred             HHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhc
Q 029764           12 MAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY   91 (188)
Q Consensus        12 l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   91 (188)
                      +...+.+.++.+|||||||-|..++++|+.+  +.+|+++++|+++.+.+++.++..|+..+++++..|-.++       
T Consensus        64 ~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~-------  134 (283)
T COG2230          64 ILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF-------  134 (283)
T ss_pred             HHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc-------
Confidence            3444567899999999999999999999986  6899999999999999999999999998899998887655       


Q ss_pred             ccCCCceeEEEEeC-----CccchHHHHHHHHhccCcCeEEEEeccccCc
Q 029764           92 SENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTLWGG  136 (188)
Q Consensus        92 ~~~~~~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  136 (188)
                         .+.||-|+.-+     .++++..+|+.+.+.|+|||.++++......
T Consensus       135 ---~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~  181 (283)
T COG2230         135 ---EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD  181 (283)
T ss_pred             ---ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence               35699998764     4567899999999999999999998877544

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.63  E-value=1.8e-14  Score=106.56  Aligned_cols=106  Identities=21%  Similarity=0.335  Sum_probs=87.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .+..++||||||+|..+..+|...| +..++++|+++++++.|++++...++. +++++++|+.+....+.    ..+++
T Consensus        15 ~~~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~----~~~~~   88 (194)
T TIGR00091        15 NKAPLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFF----PDGSL   88 (194)
T ss_pred             CCCceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhC----CCCce
Confidence            3556999999999999999999877 789999999999999999999888875 79999999987655432    13589


Q ss_pred             eEEEEeCCc---cc--------hHHHHHHHHhccCcCeEEEEe
Q 029764           99 DYAFVDADK---DN--------YCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        99 D~i~id~~~---~~--------~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      |.|+++.+.   ..        ...+++.+.++|+|||.+++.
T Consensus        89 d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~  131 (194)
T TIGR00091        89 SKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK  131 (194)
T ss_pred             eEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence            999987421   11        257899999999999999874

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=99.63  E-value=6.4e-16  Score=103.36  Aligned_cols=102  Identities=31%  Similarity=0.571  Sum_probs=51.4

Q ss_pred             EEEcccchHHHHHHHhhCCCCC--EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEE
Q 029764           25 IEIGVFTGYSLLLTALTIPEDG--QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF  102 (188)
Q Consensus        25 LeiG~g~G~~~~~la~~~~~~~--~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~  102 (188)
                      ||||+..|.++.++++.+++..  +++++|..+. .+.+++.+++.++.++++++.+++.+.++.+.     .+++|+|+
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~-----~~~~dli~   74 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP-----DGPIDLIF   74 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH-----H--EEEEE
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC-----CCCEEEEE
Confidence            7999999999999999887554  7999999986 44455555556777789999999999888774     37999999


Q ss_pred             EeCCc--cchHHHHHHHHhccCcCeEEEEecc
Q 029764          103 VDADK--DNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus       103 id~~~--~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      +|+.+  +.....++.+++.|+|||+++++|+
T Consensus        75 iDg~H~~~~~~~dl~~~~~~l~~ggviv~dD~  106 (106)
T PF13578_consen   75 IDGDHSYEAVLRDLENALPRLAPGGVIVFDDY  106 (106)
T ss_dssp             EES---HHHHHHHHHHHGGGEEEEEEEEEE--
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence            99865  5567788999999999999999984

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.62  E-value=7.3e-15  Score=99.72  Aligned_cols=102  Identities=24%  Similarity=0.446  Sum_probs=84.8

Q ss_pred             CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029764           21 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  100 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~  100 (188)
                      +.+|||+|||+|..+..+++..  ..+++++|++|..++.++.++...+..++++++++|..+..+.+     ..++||+
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~-----~~~~~D~   73 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPL-----PDGKFDL   73 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTC-----TTT-EEE
T ss_pred             CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhc-----cCceeEE
Confidence            3589999999999999999885  47999999999999999999999988888999999998776433     2589999


Q ss_pred             EEEeCCcc-----------chHHHHHHHHhccCcCeEEEE
Q 029764          101 AFVDADKD-----------NYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus       101 i~id~~~~-----------~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      |+.+.+..           .+..+++.+.++|++||.+++
T Consensus        74 Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~  113 (117)
T PF13659_consen   74 IVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF  113 (117)
T ss_dssp             EEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence            99985321           246789999999999999876

...

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.62  E-value=5.3e-15  Score=112.26  Aligned_cols=114  Identities=18%  Similarity=0.228  Sum_probs=90.0

Q ss_pred             HHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH-HHHHH
Q 029764           10 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS-VLDQL   88 (188)
Q Consensus        10 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~   88 (188)
                      .++-..+.+.++.+|||.|+|+|..+.++++...+.++|++.|..++.++.|+++++.+++.+++++.+.|..+ .+..-
T Consensus        30 ~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~  109 (247)
T PF08704_consen   30 SYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE  109 (247)
T ss_dssp             HHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT
T ss_pred             HHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc
Confidence            34455668899999999999999999999998877899999999999999999999999999899999999863 22110


Q ss_pred             hhcccCCCceeEEEEeCCccchHHHHHHHHhcc-CcCeEEEEe
Q 029764           89 LKYSENEGSFDYAFVDADKDNYCNYHERLMKLL-KVGGIAVYD  130 (188)
Q Consensus        89 ~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L-~~gG~lv~~  130 (188)
                           ....+|.||+|.  +.++..+..+.+.| ++||.+++-
T Consensus       110 -----~~~~~DavfLDl--p~Pw~~i~~~~~~L~~~gG~i~~f  145 (247)
T PF08704_consen  110 -----LESDFDAVFLDL--PDPWEAIPHAKRALKKPGGRICCF  145 (247)
T ss_dssp             ------TTSEEEEEEES--SSGGGGHHHHHHHE-EEEEEEEEE
T ss_pred             -----ccCcccEEEEeC--CCHHHHHHHHHHHHhcCCceEEEE
Confidence                 136899999996  34467788999999 899999874

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.62  E-value=7.3e-14  Score=107.92  Aligned_cols=118  Identities=15%  Similarity=0.220  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029764            9 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   88 (188)
Q Consensus         9 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   88 (188)
                      ..+...++...++.+|||+|||+|..+..++..+...++|+++|+++++++.+++++++.++. ++.+++.|+.+.... 
T Consensus        60 s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~-  137 (264)
T TIGR00446        60 SMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGAA-  137 (264)
T ss_pred             HHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhhh-
Confidence            344444556667789999999999999999998765679999999999999999999999875 589999998654221 


Q ss_pred             hhcccCCCceeEEEEeCCccc-------------------------hHHHHHHHHhccCcCeEEEEecccc
Q 029764           89 LKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        89 ~~~~~~~~~~D~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                            .+.||.|++|.+...                         ..++++.++++|||||.++......
T Consensus       138 ------~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~  202 (264)
T TIGR00446       138 ------VPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL  202 (264)
T ss_pred             ------ccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence                  356999999853221                         2357888889999999999875543

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.62  E-value=1.6e-14  Score=110.56  Aligned_cols=106  Identities=15%  Similarity=0.186  Sum_probs=86.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      .++.+|||+|||+|..+..+++.+ .++.+++++|+++++++.|+++++..+..++++++++|+.+..         .+.
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~---------~~~  125 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA---------IEN  125 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC---------CCC
Confidence            466799999999999999988753 2378999999999999999999988887778999999986531         256


Q ss_pred             eeEEEEeC-----CccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           98 FDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        98 ~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      +|+|++..     .......+++++.+.|+|||.+++.+.+
T Consensus       126 ~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~  166 (247)
T PRK15451        126 ASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF  166 (247)
T ss_pred             CCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            89988653     1223467899999999999999998754

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.61  E-value=5.4e-15  Score=109.96  Aligned_cols=104  Identities=18%  Similarity=0.241  Sum_probs=88.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++.+|||+|||.|..+.++|+.   +..|+++|++++.++.|+......++.  +++.+..+.+....       .++|
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~-------~~~F  125 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASA-------GGQF  125 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhc-------CCCc
Confidence            46789999999999999999996   689999999999999999998887753  67777777666432       4799


Q ss_pred             eEEEEeC---CccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           99 DYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        99 D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      |+|++--   +.+++..++..|.+++||||.++++....
T Consensus       126 DvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinr  164 (243)
T COG2227         126 DVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINR  164 (243)
T ss_pred             cEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEecccc
Confidence            9999763   55677889999999999999999987664

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=99.61  E-value=4.3e-14  Score=103.45  Aligned_cols=157  Identities=20%  Similarity=0.279  Sum_probs=119.1

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccchH--HHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcc
Q 029764            4 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGY--SLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   80 (188)
Q Consensus         4 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~--~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d   80 (188)
                      ..|..++++..|+...+.+.++|+.|..|.  +++.||.+. ..+++++||.++++.+...++.+...++++.++|+.++
T Consensus        25 ~ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~  104 (218)
T PF07279_consen   25 KEPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGE  104 (218)
T ss_pred             CCCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecC
Confidence            357899999999999999999999877543  344444332 23799999999999988888888888888778999998


Q ss_pred             hH-HHHHHHhhcccCCCceeEEEEeCCccchH-HHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHH
Q 029764           81 AL-SVLDQLLKYSENEGSFDYAFVDADKDNYC-NYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAIL  158 (188)
Q Consensus        81 ~~-~~~~~~~~~~~~~~~~D~i~id~~~~~~~-~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  158 (188)
                      .. +.++.+       ...|++++|+...++. .+|+.+ ++-+.|.++|..|.+..+.      .            --
T Consensus       105 ~~e~~~~~~-------~~iDF~vVDc~~~d~~~~vl~~~-~~~~~GaVVV~~Na~~r~~------~------------~~  158 (218)
T PF07279_consen  105 APEEVMPGL-------KGIDFVVVDCKREDFAARVLRAA-KLSPRGAVVVCYNAFSRST------N------------GF  158 (218)
T ss_pred             CHHHHHhhc-------cCCCEEEEeCCchhHHHHHHHHh-ccCCCceEEEEeccccCCc------C------------Cc
Confidence            64 466664       7899999999887777 666654 4445666777787764220      0            12


Q ss_pred             HHHHHhhcCCCeEEEEeecCCceEEEEE
Q 029764          159 DLNRSLADDPRVQLSHVALGDGITICRR  186 (188)
Q Consensus       159 ~~~~~~~~~~~~~~~~lp~~~G~~~~~~  186 (188)
                      .|...++..+.+.+.+||+|.|+.|++-
T Consensus       159 ~w~~~~~~~r~Vrsv~LPIG~GleVt~i  186 (218)
T PF07279_consen  159 SWRSVLRGRRVVRSVFLPIGKGLEVTRI  186 (218)
T ss_pred             cHHHhcCCCCceeEEEeccCCCeEEEEE
Confidence            3445567778899999999999999873

The function of this family is unknown.

>TIGR00740 methyltransferase, putative

Probab=99.61  E-value=3.4e-14  Score=108.29  Aligned_cols=106  Identities=12%  Similarity=0.132  Sum_probs=86.5

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      ++.+|||+|||+|..+..+++.++ ++++++++|+++++++.|++++...+...+++++++|..+..         ...+
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~  123 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE---------IKNA  123 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---------CCCC
Confidence            567999999999999999998753 378999999999999999999887766667999999986541         2468


Q ss_pred             eEEEEeCC-----ccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           99 DYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        99 D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      |+|++...     ..+...+++++.+.|+|||.+++.+...
T Consensus       124 d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~  164 (239)
T TIGR00740       124 SMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR  164 (239)
T ss_pred             CEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence            88876532     1234678999999999999999988654

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.61  E-value=4.8e-14  Score=115.87  Aligned_cols=122  Identities=19%  Similarity=0.229  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764            7 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   86 (188)
Q Consensus         7 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   86 (188)
                      ....++..++...++.+|||+|||+|+.+..++...+ +++|+++|+++++++.+++++++.|+...+.+..+|..+...
T Consensus       225 ~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~  303 (426)
T TIGR00563       225 ASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQ  303 (426)
T ss_pred             HHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccc
Confidence            4455666666777888999999999999999999886 789999999999999999999999876444456666543211


Q ss_pred             HHhhcccCCCceeEEEEeCCccc-------------------------hHHHHHHHHhccCcCeEEEEecccc
Q 029764           87 QLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        87 ~~~~~~~~~~~~D~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                       +.    ..++||.|++|++...                         ...+++.++++|||||.++......
T Consensus       304 -~~----~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~  371 (426)
T TIGR00563       304 -WA----ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV  371 (426)
T ss_pred             -cc----cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence             10    1368999999843211                         2467888899999999999876664

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.60  E-value=2.7e-14  Score=117.86  Aligned_cols=118  Identities=25%  Similarity=0.249  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029764            8 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   87 (188)
Q Consensus         8 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   87 (188)
                      ...+...++...++.+|||+|||+|..+..++..+...++|+++|+++++++.++++++..|+. +++++++|+.+..+ 
T Consensus       238 ~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~~-  315 (445)
T PRK14904        238 TQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFSP-  315 (445)
T ss_pred             HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCccccccc-
Confidence            3444445556667789999999999999999987765679999999999999999999999875 69999999865421 


Q ss_pred             HhhcccCCCceeEEEEeCCcc-------------------------chHHHHHHHHhccCcCeEEEEecccc
Q 029764           88 LLKYSENEGSFDYAFVDADKD-------------------------NYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        88 ~~~~~~~~~~~D~i~id~~~~-------------------------~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                             ..+||.|++|.+..                         ....+++.+.+.|+|||.+++.....
T Consensus       316 -------~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~  380 (445)
T PRK14904        316 -------EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI  380 (445)
T ss_pred             -------CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence                   36899999984321                         01247888899999999999976654

>PLN02244 tocopherol O-methyltransferase

Probab=99.60  E-value=9e-15  Score=116.83  Aligned_cols=106  Identities=16%  Similarity=0.254  Sum_probs=88.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++.+|||||||+|..+..+++.+  +.+|+++|+++.+++.++++.+..++.++++++++|+.+.  .+     ..++|
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~--~~-----~~~~F  187 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ--PF-----EDGQF  187 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC--CC-----CCCCc
Confidence            456799999999999999999875  5799999999999999999988888877899999998653  11     24789


Q ss_pred             eEEEEeC---CccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           99 DYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        99 D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      |+|++..   +..+...+++++.++|||||.+++.+..
T Consensus       188 D~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~  225 (340)
T PLN02244        188 DLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWC  225 (340)
T ss_pred             cEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence            9999753   3345678999999999999999987644

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.60  E-value=1.2e-13  Score=112.10  Aligned_cols=112  Identities=21%  Similarity=0.319  Sum_probs=89.4

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCC-CcEEEEEcchHHHHHHHhhcccCC
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      ...++++|||+|||+|..++..+..  ...+|+++|.++.+++.|++|++.+++. ++++++++|+.+.+..+...   .
T Consensus       217 ~~~~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~---~  291 (396)
T PRK15128        217 RYVENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDR---G  291 (396)
T ss_pred             HhcCCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhc---C
Confidence            4557889999999999998876643  2459999999999999999999999986 57999999999987765322   3


Q ss_pred             CceeEEEEeCCc------------cchHHHHHHHHhccCcCeEEEEeccc
Q 029764           96 GSFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        96 ~~~D~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      ++||+|++|.+.            ..+..++..+.++|++||.+++....
T Consensus       292 ~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs  341 (396)
T PRK15128        292 EKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS  341 (396)
T ss_pred             CCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            689999999642            13455666778999999999875443

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.60  E-value=1.1e-14  Score=109.11  Aligned_cols=113  Identities=21%  Similarity=0.276  Sum_probs=89.1

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029764            4 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   83 (188)
Q Consensus         4 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   83 (188)
                      +.|.....+..++...++.+|||+|||+|+.+..++...   .+++++|.++++++.+++++++.++.+ +++..+|..+
T Consensus        62 ~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~  137 (212)
T PRK00312         62 SQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGDGWK  137 (212)
T ss_pred             CcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECCccc
Confidence            345555555556667778899999999999999888763   489999999999999999999988754 9999999754


Q ss_pred             HHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           84 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        84 ~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ..+.       .++||+|+++......   .+.+.+.|+|||.+++.
T Consensus       138 ~~~~-------~~~fD~I~~~~~~~~~---~~~l~~~L~~gG~lv~~  174 (212)
T PRK00312        138 GWPA-------YAPFDRILVTAAAPEI---PRALLEQLKEGGILVAP  174 (212)
T ss_pred             CCCc-------CCCcCEEEEccCchhh---hHHHHHhcCCCcEEEEE
Confidence            3221       3689999998754433   45678999999999985

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.60  E-value=6e-14  Score=115.28  Aligned_cols=120  Identities=23%  Similarity=0.272  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764            7 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   86 (188)
Q Consensus         7 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   86 (188)
                      ..+.+...++...++.+|||+|||+|..+..++...+ +++|+++|.++++++.++++++..++.  ++++++|+.+...
T Consensus       231 ~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~  307 (427)
T PRK10901        231 AAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQ  307 (427)
T ss_pred             HHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchh
Confidence            3445555566677888999999999999999999875 579999999999999999999998864  6888999865322


Q ss_pred             HHhhcccCCCceeEEEEeCCccc-------------------------hHHHHHHHHhccCcCeEEEEecccc
Q 029764           87 QLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        87 ~~~~~~~~~~~~D~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      .+     ..++||.|++|.+...                         ...+++.+.+.|+|||.+++.....
T Consensus       308 ~~-----~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~  375 (427)
T PRK10901        308 WW-----DGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI  375 (427)
T ss_pred             hc-----ccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            11     1367999999864211                         1357888889999999999876543

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.60  E-value=1.5e-14  Score=114.18  Aligned_cols=104  Identities=19%  Similarity=0.176  Sum_probs=85.3

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   99 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   99 (188)
                      ++.+|||||||+|..+..+++.   +.+|++||+++++++.|+++....+...+++++++++.+...       ..++||
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~-------~~~~FD  200 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD-------EGRKFD  200 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh-------ccCCCC
Confidence            4568999999999999999873   679999999999999999887655554579999999866421       147899


Q ss_pred             EEEEeC---CccchHHHHHHHHhccCcCeEEEEeccc
Q 029764          100 YAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus       100 ~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      +|++..   +..+...+++.+.++|||||.+++....
T Consensus       201 ~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~n  237 (322)
T PLN02396        201 AVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTIN  237 (322)
T ss_pred             EEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            999764   3456788999999999999999998654

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.59  E-value=3.3e-14  Score=107.27  Aligned_cols=103  Identities=19%  Similarity=0.294  Sum_probs=87.2

Q ss_pred             CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029764           22 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  101 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i  101 (188)
                      ++|||||||+|..+..+++.++ +.+++++|+++++++.+++++...++.++++++.+|..+. + +      .++||+|
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-~-~------~~~fD~I   71 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD-P-F------PDTYDLV   71 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC-C-C------CCCCCEe
Confidence            4799999999999999999876 6899999999999999999999988888899999987443 1 1      3589999


Q ss_pred             EEeC---CccchHHHHHHHHhccCcCeEEEEeccc
Q 029764          102 FVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus       102 ~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      ++..   +..+...+++.+.++|+|||.+++.+..
T Consensus        72 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  106 (224)
T smart00828       72 FGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFI  106 (224)
T ss_pred             ehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence            8652   3345678999999999999999998764

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.59  E-value=2e-14  Score=108.36  Aligned_cols=116  Identities=21%  Similarity=0.281  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029764            9 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   88 (188)
Q Consensus         9 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   88 (188)
                      +-+|..++......+|||+|||+|..++.+|+..+ ..++++||+++++++.|+++++.+++.++++++++|..++.+..
T Consensus        33 aiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~  111 (248)
T COG4123          33 AILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKAL  111 (248)
T ss_pred             HHHHHhhcccccCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcc
Confidence            45677777777888999999999999999999877 59999999999999999999999999999999999998876654


Q ss_pred             hhcccCCCceeEEEEeCCc---------------------cchHHHHHHHHhccCcCeEEEEe
Q 029764           89 LKYSENEGSFDYAFVDADK---------------------DNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        89 ~~~~~~~~~~D~i~id~~~---------------------~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                           ...+||+|+++.+.                     ....++++.+..+||+||.+.+.
T Consensus       112 -----~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V  169 (248)
T COG4123         112 -----VFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV  169 (248)
T ss_pred             -----cccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE
Confidence                 24579999987321                     11356778888999999998873

>PRK00811 spermidine synthase; Provisional

Probab=99.58  E-value=4.2e-14  Score=110.22  Aligned_cols=106  Identities=21%  Similarity=0.271  Sum_probs=86.3

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcC--C--CCcEEEEEcchHHHHHHHhhccc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V--DHKINFIESEALSVLDQLLKYSE   93 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~--~~~~~~~~~d~~~~~~~~~~~~~   93 (188)
                      ..++++||+||||.|..+..+++..+ ..+|++||+++++++.+++++...+  .  .++++++.+|+...+...     
T Consensus        74 ~~~p~~VL~iG~G~G~~~~~~l~~~~-~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~-----  147 (283)
T PRK00811         74 HPNPKRVLIIGGGDGGTLREVLKHPS-VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET-----  147 (283)
T ss_pred             CCCCCEEEEEecCchHHHHHHHcCCC-CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC-----
Confidence            34678999999999999999987633 5799999999999999999987542  2  468999999999877652     


Q ss_pred             CCCceeEEEEeCCcc-------chHHHHHHHHhccCcCeEEEEe
Q 029764           94 NEGSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        94 ~~~~~D~i~id~~~~-------~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                       .++||+|++|...+       ...++++.+.+.|+|||++++.
T Consensus       148 -~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~  190 (283)
T PRK00811        148 -ENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ  190 (283)
T ss_pred             -CCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence             47899999985221       1257789999999999999975

>PLN02366 spermidine synthase

Probab=99.58  E-value=2.7e-13  Score=106.46  Aligned_cols=108  Identities=19%  Similarity=0.298  Sum_probs=87.6

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcC--C-CCcEEEEEcchHHHHHHHhhcccC
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~-~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      ..++++||+||||.|..+..++++ +...+|+.+|+++++++.+++.+...+  + .++++++.+|+...+....     
T Consensus        89 ~~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~-----  162 (308)
T PLN02366         89 IPNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAP-----  162 (308)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhcc-----
Confidence            467889999999999999999886 435799999999999999999987542  2 3689999999988876531     


Q ss_pred             CCceeEEEEeCCcc-------chHHHHHHHHhccCcCeEEEEec
Q 029764           95 EGSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        95 ~~~~D~i~id~~~~-------~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      .++||+|++|...+       ...++++.+.+.|+|||+++...
T Consensus       163 ~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~  206 (308)
T PLN02366        163 EGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA  206 (308)
T ss_pred             CCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence            36899999996332       13578999999999999998753

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.57  E-value=2.5e-14  Score=106.02  Aligned_cols=102  Identities=18%  Similarity=0.225  Sum_probs=81.8

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      ...++.+|||+|||+|..+.++++.   +.+|+++|+++++++.++++.+..++. ++++...|..+.  .+      .+
T Consensus        27 ~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~--~~------~~   94 (197)
T PRK11207         27 KVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNL--TF------DG   94 (197)
T ss_pred             ccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhC--Cc------CC
Confidence            3556789999999999999999985   569999999999999999998887764 488888887543  11      35


Q ss_pred             ceeEEEEeCC-----ccchHHHHHHHHhccCcCeEEEEe
Q 029764           97 SFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        97 ~~D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      +||+|++...     ......+++.+.++|+|||.+++.
T Consensus        95 ~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~  133 (197)
T PRK11207         95 EYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV  133 (197)
T ss_pred             CcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            7999987632     224568899999999999986543

>PRK01581 speE spermidine synthase; Validated

Probab=99.57  E-value=2.7e-13  Score=107.43  Aligned_cols=108  Identities=15%  Similarity=0.218  Sum_probs=85.4

Q ss_pred             HHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHH--H---hcCC-CCcEEEEEcchHHHHHHHh
Q 029764           16 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII--K---KAGV-DHKINFIESEALSVLDQLL   89 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~--~---~~~~-~~~~~~~~~d~~~~~~~~~   89 (188)
                      ....++++||++|||.|..+..+++.. +..+|++||+++++++.|++..  .   +..+ .++++++.+|+.+++... 
T Consensus       146 ~~h~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~-  223 (374)
T PRK01581        146 SKVIDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP-  223 (374)
T ss_pred             HhCCCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc-
Confidence            346678899999999999888888753 3679999999999999999731  1   1122 468999999999987653 


Q ss_pred             hcccCCCceeEEEEeCCccc--------hHHHHHHHHhccCcCeEEEEe
Q 029764           90 KYSENEGSFDYAFVDADKDN--------YCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        90 ~~~~~~~~~D~i~id~~~~~--------~~~~~~~~~~~L~~gG~lv~~  130 (188)
                           .+.||+|++|.....        ..++++.+.+.|+|||++++.
T Consensus       224 -----~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q  267 (374)
T PRK01581        224 -----SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ  267 (374)
T ss_pred             -----CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence                 468999999953211        256889999999999999886

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.57  E-value=1.6e-13  Score=107.31  Aligned_cols=116  Identities=15%  Similarity=0.139  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHH-HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029764            7 DAGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   85 (188)
Q Consensus         7 ~~~~~l~~l~~-~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   85 (188)
                      .+...+..+.. ..++.+|||+|||+|..++.+++. . ..+++++|+++.+++.+++++..+++.+++.+..++.... 
T Consensus       145 tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-  221 (288)
T TIGR00406       145 TTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-  221 (288)
T ss_pred             HHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-
Confidence            34444444433 346689999999999999888764 3 4699999999999999999999988877777777663211 


Q ss_pred             HHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           86 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        86 ~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                              ..++||+|+++........++..+.++|+|||.+++....
T Consensus       222 --------~~~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi~  261 (288)
T TIGR00406       222 --------IEGKADVIVANILAEVIKELYPQFSRLVKPGGWLILSGIL  261 (288)
T ss_pred             --------cCCCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence                    1368999999876666678889999999999999997654

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.57  E-value=2.9e-14  Score=110.69  Aligned_cols=113  Identities=18%  Similarity=0.298  Sum_probs=90.8

Q ss_pred             HHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764           16 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      +...++.+|||+|||+|..+..+++...+.++|+++|+++++++.|+++....++. +++++.+|..+. + +     ..
T Consensus        73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l-~-~-----~~  144 (272)
T PRK11873         73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEAL-P-V-----AD  144 (272)
T ss_pred             ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhC-C-C-----CC
Confidence            34567789999999999998888877654679999999999999999999888764 689999987543 1 1     14


Q ss_pred             CceeEEEEeC---CccchHHHHHHHHhccCcCeEEEEeccccCc
Q 029764           96 GSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLWGG  136 (188)
Q Consensus        96 ~~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  136 (188)
                      ++||+|+...   ...+....++++.++|||||.+++.+....+
T Consensus       145 ~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~  188 (272)
T PRK11873        145 NSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRG  188 (272)
T ss_pred             CceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccC
Confidence            6899999774   2345578899999999999999998776533

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.57  E-value=5.9e-14  Score=109.58  Aligned_cols=118  Identities=19%  Similarity=0.316  Sum_probs=92.4

Q ss_pred             cHHHHHHHHHHHHH---cCC-CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcc
Q 029764            5 APDAGQLMAMLLRL---VNA-KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   80 (188)
Q Consensus         5 ~~~~~~~l~~l~~~---~~~-~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d   80 (188)
                      .+++..++......   .++ .+|||+|||+|..++.++...+ +.+++++|+++++++.|++|+..+++.++++++++|
T Consensus        95 r~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d  173 (284)
T TIGR00536        95 RPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSN  173 (284)
T ss_pred             CCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECc
Confidence            45667777665432   223 6899999999999999999876 789999999999999999999998887779999999


Q ss_pred             hHHHHHHHhhcccCCCceeEEEEeCCc----------------------------cchHHHHHHHHhccCcCeEEEEec
Q 029764           81 ALSVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~D~i~id~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      ..+.++        ..+||+|+++.+.                            ..+..+++.+.+.|++||++++.-
T Consensus       174 ~~~~~~--------~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~  244 (284)
T TIGR00536       174 LFEPLA--------GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI  244 (284)
T ss_pred             hhccCc--------CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence            865321        2479999986210                            024467778889999999998853

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.57  E-value=1.1e-13  Score=111.08  Aligned_cols=114  Identities=21%  Similarity=0.343  Sum_probs=96.8

Q ss_pred             HHHHcCCCEEEEEcccchHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHhcCCC-CcEEEEEcchHHHHHHHhhcc
Q 029764           15 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYS   92 (188)
Q Consensus        15 l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~   92 (188)
                      +....++++||++.|.||..++..|..   ++ ++++||.+...++.|++|++.+|+. .++.++++|+.+.+...... 
T Consensus       212 l~~~~~GkrvLNlFsYTGgfSv~Aa~g---GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~-  287 (393)
T COG1092         212 LGELAAGKRVLNLFSYTGGFSVHAALG---GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERR-  287 (393)
T ss_pred             HhhhccCCeEEEecccCcHHHHHHHhc---CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhc-
Confidence            445556899999999999999999885   44 9999999999999999999999986 56899999999999887654 


Q ss_pred             cCCCceeEEEEeCC------------ccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           93 ENEGSFDYAFVDAD------------KDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        93 ~~~~~~D~i~id~~------------~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                        +.+||+|++|.+            ..++..++..+.++|+|||.+++.+...
T Consensus       288 --g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~  339 (393)
T COG1092         288 --GEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR  339 (393)
T ss_pred             --CCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence              569999999953            1346678888899999999999977664

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.57  E-value=6.2e-13  Score=102.04  Aligned_cols=110  Identities=16%  Similarity=0.231  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHH-HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029764            7 DAGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   85 (188)
Q Consensus         7 ~~~~~l~~l~~-~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   85 (188)
                      .+...+..+.. ..++.+|||+|||+|..++.+++..  ..+++++|+++.+++.|+++++.+++..++.+..++     
T Consensus       105 tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g--~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~-----  177 (250)
T PRK00517        105 TTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLG--AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD-----  177 (250)
T ss_pred             HHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC-----
Confidence            44445555544 3477899999999999998877642  347999999999999999999888765444433221     


Q ss_pred             HHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           86 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        86 ~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                                .+||+|+++........++..+.+.|+|||.+++.+..
T Consensus       178 ----------~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~  215 (250)
T PRK00517        178 ----------LKADVIVANILANPLLELAPDLARLLKPGGRLILSGIL  215 (250)
T ss_pred             ----------CCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence                      26999998876666678889999999999999997554

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.56  E-value=2.9e-13  Score=100.10  Aligned_cols=112  Identities=14%  Similarity=0.132  Sum_probs=85.0

Q ss_pred             HHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhh
Q 029764           11 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK   90 (188)
Q Consensus        11 ~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   90 (188)
                      ++.++....++.+|||+|||+|..++.++...  ..+|+++|.++++++.+++|++.+++. +++++++|+.+.++..  
T Consensus        44 l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~--  118 (199)
T PRK10909         44 LFNWLAPVIVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQP--  118 (199)
T ss_pred             HHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhc--
Confidence            45555444567899999999999998654432  369999999999999999999998865 6999999998766432  


Q ss_pred             cccCCCceeEEEEeCC-ccc-hHHHHHHHHh--ccCcCeEEEEec
Q 029764           91 YSENEGSFDYAFVDAD-KDN-YCNYHERLMK--LLKVGGIAVYDN  131 (188)
Q Consensus        91 ~~~~~~~~D~i~id~~-~~~-~~~~~~~~~~--~L~~gG~lv~~~  131 (188)
                          ..+||+||+|.+ ... ....++.+.+  +|++++++++..
T Consensus       119 ----~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~  159 (199)
T PRK10909        119 ----GTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVES  159 (199)
T ss_pred             ----CCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence                357999999976 222 3445555543  478999988864

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.56  E-value=4.5e-14  Score=104.47  Aligned_cols=108  Identities=15%  Similarity=0.188  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029764            9 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   88 (188)
Q Consensus         9 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   88 (188)
                      ..++. .+...++.+|||+|||+|..+.++++.   +.+|+++|+++.+++.++++.+..++.  +.+...|....  .+
T Consensus        20 ~~l~~-~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~--~~   91 (195)
T TIGR00477        20 SAVRE-AVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAA--AL   91 (195)
T ss_pred             HHHHH-HhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhc--cc
Confidence            33443 345556789999999999999999984   679999999999999999988777763  66667775432  11


Q ss_pred             hhcccCCCceeEEEEeCC-----ccchHHHHHHHHhccCcCeEEEEe
Q 029764           89 LKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        89 ~~~~~~~~~~D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                            .++||+|++...     ......+++.+.++|+|||++++-
T Consensus        92 ------~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477        92 ------NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             ------cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence                  357999987532     234567899999999999985553

Part of a tellurite-reducing operon tehA and tehB

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.55  E-value=1.1e-13  Score=109.22  Aligned_cols=104  Identities=22%  Similarity=0.394  Sum_probs=83.8

Q ss_pred             HHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764           16 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      +...++.+|||+|||+|+.+..+++..+..++|+++|.++++++.|+++++..+.. ++.++++|+.+..+.       .
T Consensus        76 L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-nV~~i~gD~~~~~~~-------~  147 (322)
T PRK13943         76 VGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-NVIFVCGDGYYGVPE-------F  147 (322)
T ss_pred             cCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCChhhcccc-------c
Confidence            34567789999999999999999988754468999999999999999999988874 689999998654332       3


Q ss_pred             CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      .+||+|+++....+   ..+.+.+.|++||.+++.
T Consensus       148 ~~fD~Ii~~~g~~~---ip~~~~~~LkpgG~Lvv~  179 (322)
T PRK13943        148 APYDVIFVTVGVDE---VPETWFTQLKEGGRVIVP  179 (322)
T ss_pred             CCccEEEECCchHH---hHHHHHHhcCCCCEEEEE
Confidence            67999999865433   234567899999998874

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.55  E-value=2.9e-13  Score=98.83  Aligned_cols=109  Identities=19%  Similarity=0.188  Sum_probs=86.2

Q ss_pred             HHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029764           10 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   89 (188)
Q Consensus        10 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   89 (188)
                      .+|.......++.+|||+|||+|..+..++...   .+++++|+++++++.++++++..+.  +++++.+|..+..    
T Consensus         9 ~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~----   79 (179)
T TIGR00537         9 LLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV----   79 (179)
T ss_pred             HHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc----
Confidence            556566667778899999999999999998863   3899999999999999999987764  4788888875531    


Q ss_pred             hcccCCCceeEEEEeCCcc------------------------chHHHHHHHHhccCcCeEEEEecc
Q 029764           90 KYSENEGSFDYAFVDADKD------------------------NYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        90 ~~~~~~~~~D~i~id~~~~------------------------~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                           .++||+|+++.+..                        ....+++.+.++|+|||.+++...
T Consensus        80 -----~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~  141 (179)
T TIGR00537        80 -----RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS  141 (179)
T ss_pred             -----CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence                 35899999874210                        034578888999999999888643

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.55  E-value=6.3e-14  Score=112.58  Aligned_cols=101  Identities=13%  Similarity=0.124  Sum_probs=82.4

Q ss_pred             CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCC--CcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           21 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD--HKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      ..+|||+|||+|..++.+++..| ..+|+++|.++.+++.++++++.++..  .+++++.+|..+.++        ..+|
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~--------~~~f  299 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE--------PFRF  299 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC--------CCCE
Confidence            35899999999999999999877 789999999999999999999877643  368888888754321        3589


Q ss_pred             eEEEEeCCcc--------chHHHHHHHHhccCcCeEEEEe
Q 029764           99 DYAFVDADKD--------NYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        99 D~i~id~~~~--------~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      |+|+++.+..        ....++..+.+.|+|||.+++.
T Consensus       300 DlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV  339 (378)
T PRK15001        300 NAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV  339 (378)
T ss_pred             EEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence            9999974321        2356788889999999998875

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.55  E-value=2.3e-14  Score=93.23  Aligned_cols=92  Identities=24%  Similarity=0.344  Sum_probs=73.6

Q ss_pred             EEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEe
Q 029764           25 IEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD  104 (188)
Q Consensus        25 LeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id  104 (188)
                      ||+|||+|..+..+++. + ..+++++|+++++++.+++.....    ++.+..+|..+.  .+     ..++||+|++.
T Consensus         1 LdiG~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l--~~-----~~~sfD~v~~~   67 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-G-GASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDL--PF-----PDNSFDVVFSN   67 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-T-TCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSS--SS------TT-EEEEEEE
T ss_pred             CEecCcCCHHHHHHHhc-c-CCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhC--cc-----ccccccccccc
Confidence            79999999999999997 3 789999999999999999986543    356888988665  22     25899999987


Q ss_pred             C---CccchHHHHHHHHhccCcCeEEEE
Q 029764          105 A---DKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus       105 ~---~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      .   +.++...+++++.++|||||.+++
T Consensus        68 ~~~~~~~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   68 SVLHHLEDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             SHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence            4   235678899999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.54  E-value=3.9e-14  Score=93.84  Aligned_cols=93  Identities=20%  Similarity=0.394  Sum_probs=73.0

Q ss_pred             EEEEcccchHHHHHHHhhCCC--CCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029764           24 TIEIGVFTGYSLLLTALTIPE--DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  101 (188)
Q Consensus        24 vLeiG~g~G~~~~~la~~~~~--~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i  101 (188)
                      |||+|||+|..+..++..++.  ..+++++|+++++++.++++....+.  +++++++|+.+. +..      .++||+|
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l-~~~------~~~~D~v   71 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDL-PFS------DGKFDLV   71 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCH-HHH------SSSEEEE
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHC-ccc------CCCeeEE
Confidence            799999999999999988732  37999999999999999999887664  689999999774 332      5799999


Q ss_pred             EEeC------CccchHHHHHHHHhccCcCe
Q 029764          102 FVDA------DKDNYCNYHERLMKLLKVGG  125 (188)
Q Consensus       102 ~id~------~~~~~~~~~~~~~~~L~~gG  125 (188)
                      ++..      +.+....+++++.++|+|||
T Consensus        72 ~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   72 VCSGLSLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             EE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             EEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence            9942      23345778999999999998

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.54  E-value=5.1e-14  Score=108.47  Aligned_cols=98  Identities=23%  Similarity=0.324  Sum_probs=81.1

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..++.+|||||||+|..+..++...+ +.+++++|+++++++.+++++      ++++++.+|..+..+        ..+
T Consensus        29 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~--------~~~   93 (258)
T PRK01683         29 LENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQP--------PQA   93 (258)
T ss_pred             CcCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCC--------CCC
Confidence            45667999999999999999998876 789999999999999998864      357888998864321        368


Q ss_pred             eeEEEEeCC---ccchHHHHHHHHhccCcCeEEEEe
Q 029764           98 FDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        98 ~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ||+|++...   ..+...+++.+.+.|+|||.+++.
T Consensus        94 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~  129 (258)
T PRK01683         94 LDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQ  129 (258)
T ss_pred             ccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence            999998742   345678899999999999999885

>TIGR00417 speE spermidine synthase

Probab=99.54  E-value=7.2e-13  Score=102.74  Aligned_cols=106  Identities=22%  Similarity=0.262  Sum_probs=85.7

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcC--C-CCcEEEEEcchHHHHHHHhhcccC
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~-~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      ..++++||+||||+|..+..+++..+ ..+++++|+++++++.+++++...+  + .++++++.+|+.+.+...      
T Consensus        70 ~~~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~------  142 (270)
T TIGR00417        70 HPNPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT------  142 (270)
T ss_pred             CCCCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC------
Confidence            34667999999999999988887653 5789999999999999999886543  1 257889999998877653      


Q ss_pred             CCceeEEEEeCCcc-----c--hHHHHHHHHhccCcCeEEEEe
Q 029764           95 EGSFDYAFVDADKD-----N--YCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        95 ~~~~D~i~id~~~~-----~--~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      .++||+|++|....     .  ..++++.+.++|+|||++++.
T Consensus       143 ~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       143 ENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             CCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence            47899999986311     1  357889999999999999986

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.53  E-value=9.5e-14  Score=116.03  Aligned_cols=101  Identities=19%  Similarity=0.315  Sum_probs=82.4

Q ss_pred             CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029764           21 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  100 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~  100 (188)
                      +.+|||+|||+|..++.++...+ +.+++++|+++++++.|++|+..+++.+++.++.+|..+.++        .++||+
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~--------~~~fDl  209 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE--------KQKFDF  209 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc--------CCCccE
Confidence            45899999999999999998876 789999999999999999999988887789999999765321        358999


Q ss_pred             EEEeCCc-----------------------------cchHHHHHHHHhccCcCeEEEEe
Q 029764          101 AFVDADK-----------------------------DNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus       101 i~id~~~-----------------------------~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      |+++.+.                             ..+..+++.+.++|+|||.+++.
T Consensus       210 IvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE  268 (506)
T PRK01544        210 IVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE  268 (506)
T ss_pred             EEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence            9986310                             11234566777899999999885

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.53  E-value=4.9e-14  Score=108.41  Aligned_cols=96  Identities=15%  Similarity=0.101  Sum_probs=79.3

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..++.+|||+|||+|..+..++...+ +.+++++|+++.+++.|++.        +++++++|+.+.. .       .++
T Consensus        27 ~~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~-~-------~~~   89 (255)
T PRK14103         27 AERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK-P-------KPD   89 (255)
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC-C-------CCC
Confidence            34667999999999999999999876 78999999999999988762        4778899986542 1       368


Q ss_pred             eeEEEEeC---CccchHHHHHHHHhccCcCeEEEEe
Q 029764           98 FDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        98 ~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ||+|++..   +..+...++.++.+.|||||.+++.
T Consensus        90 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~  125 (255)
T PRK14103         90 TDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQ  125 (255)
T ss_pred             ceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence            99999874   2345678899999999999999885

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.53  E-value=1.4e-13  Score=108.59  Aligned_cols=109  Identities=13%  Similarity=0.115  Sum_probs=89.8

Q ss_pred             HHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764           16 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      +...+..+|||||||+|..+..+++..| +.+++++|. |++++.++++++..++.++++++.+|..+.  .       .
T Consensus       145 ~~~~~~~~vlDiG~G~G~~~~~~~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~--~-------~  213 (306)
T TIGR02716       145 AKLDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE--S-------Y  213 (306)
T ss_pred             cCCCCCCEEEEeCCchhHHHHHHHHHCC-CCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCC--C-------C
Confidence            3455668999999999999999999987 789999998 789999999999999888999999998642  1       2


Q ss_pred             CceeEEEEeC-----CccchHHHHHHHHhccCcCeEEEEeccccC
Q 029764           96 GSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTLWG  135 (188)
Q Consensus        96 ~~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  135 (188)
                      +.+|+|++..     .......+++++.+.|+|||.+++.|..+.
T Consensus       214 ~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~  258 (306)
T TIGR02716       214 PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVID  258 (306)
T ss_pred             CCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence            4579988664     122335689999999999999999987664

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.53  E-value=2.5e-13  Score=117.63  Aligned_cols=111  Identities=19%  Similarity=0.309  Sum_probs=91.7

Q ss_pred             HHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCC-CcEEEEEcchHHHHHHHhhccc
Q 029764           15 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSE   93 (188)
Q Consensus        15 l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~   93 (188)
                      +....++++|||+|||+|..++.++..-  ..+|+++|+++.+++.|++|++.+++. ++++++++|+.+.+..+     
T Consensus       533 ~~~~~~g~rVLDlf~gtG~~sl~aa~~G--a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~-----  605 (702)
T PRK11783        533 IGQMAKGKDFLNLFAYTGTASVHAALGG--AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEA-----  605 (702)
T ss_pred             HHHhcCCCeEEEcCCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHc-----
Confidence            4455678899999999999999999852  347999999999999999999999986 67999999999877654     


Q ss_pred             CCCceeEEEEeCCc--------------cchHHHHHHHHhccCcCeEEEEeccc
Q 029764           94 NEGSFDYAFVDADK--------------DNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        94 ~~~~~D~i~id~~~--------------~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                       .++||+|++|.+.              ..+..++..+.++|+|||.+++....
T Consensus       606 -~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~  658 (702)
T PRK11783        606 -REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK  658 (702)
T ss_pred             -CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence             3689999999642              12456778888999999999886543

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.52  E-value=3.7e-13  Score=103.08  Aligned_cols=115  Identities=24%  Similarity=0.409  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHc--CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029764            6 PDAGQLMAMLLRLV--NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   83 (188)
Q Consensus         6 ~~~~~~l~~l~~~~--~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   83 (188)
                      +.+..++..++...  ++.+|||+|||+|..+..++...+ ..+++++|+++.+++.+++++...++. +++++++|..+
T Consensus        71 ~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~  148 (251)
T TIGR03534        71 PDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFE  148 (251)
T ss_pred             CChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhc
Confidence            45556666555443  345899999999999999999876 779999999999999999999888875 69999999865


Q ss_pred             HHHHHhhcccCCCceeEEEEeCCcc-----------------------------chHHHHHHHHhccCcCeEEEEe
Q 029764           84 VLDQLLKYSENEGSFDYAFVDADKD-----------------------------NYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        84 ~~~~~~~~~~~~~~~D~i~id~~~~-----------------------------~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ..+        .++||+|+++.+..                             .+..+++.+.++|++||.+++.
T Consensus       149 ~~~--------~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~  216 (251)
T TIGR03534       149 PLP--------GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE  216 (251)
T ss_pred             cCc--------CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence            321        37899999863211                             0235678888999999999985

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK04266 fibrillarin; Provisional

Probab=99.52  E-value=1.9e-13  Score=103.06  Aligned_cols=105  Identities=14%  Similarity=0.165  Sum_probs=81.7

Q ss_pred             HHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH--HHHhhccc
Q 029764           16 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL--DQLLKYSE   93 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~   93 (188)
                      +...++.+|||+|||+|..+..++...+ .++|+++|+++++++.+.++++..   +++.++.+|+.+..  ..+     
T Consensus        68 l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l-----  138 (226)
T PRK04266         68 FPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHV-----  138 (226)
T ss_pred             CCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhc-----
Confidence            4556778999999999999999999876 679999999999999887776543   46888999875421  111     


Q ss_pred             CCCceeEEEEeCCcc-chHHHHHHHHhccCcCeEEEEe
Q 029764           94 NEGSFDYAFVDADKD-NYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        94 ~~~~~D~i~id~~~~-~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                       ..+||+|+.+.... ....+++.+.+.|||||.+++.
T Consensus       139 -~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~  175 (226)
T PRK04266        139 -VEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLA  175 (226)
T ss_pred             -cccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence             25699999876432 2234578999999999999985

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.51  E-value=7.7e-13  Score=103.03  Aligned_cols=116  Identities=21%  Similarity=0.288  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHH-cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029764            6 PDAGQLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   84 (188)
Q Consensus         6 ~~~~~~l~~l~~~-~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   84 (188)
                      +.+...|..+... .++++|||+|||+|-.++..++.-  ..+|+++|++|.+++.|++|++.+++.+++.+.  ...+.
T Consensus       146 ~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klG--A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~  221 (295)
T PF06325_consen  146 PTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLG--AKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL  221 (295)
T ss_dssp             HHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTT--BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT
T ss_pred             HHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcC--CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc
Confidence            3444555555554 456799999999999999988752  468999999999999999999999998877653  11111


Q ss_pred             HHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           85 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        85 ~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                               ..++||+|+.+....-...+...+.++|+|||.++++..+.
T Consensus       222 ---------~~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~  262 (295)
T PF06325_consen  222 ---------VEGKFDLVVANILADVLLELAPDIASLLKPGGYLILSGILE  262 (295)
T ss_dssp             ---------CCS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEEG
T ss_pred             ---------ccccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEccccH
Confidence                     13789999998777677778888889999999999987764

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.51  E-value=1.3e-13  Score=106.44  Aligned_cols=114  Identities=18%  Similarity=0.246  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029764            8 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   87 (188)
Q Consensus         8 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   87 (188)
                      +..++.. +...++.+|||||||+|..+..++...  +++|+++|+++.++..+++++..   .+++.+..+|+.+.  .
T Consensus        41 ~~~~l~~-l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~--~  112 (263)
T PTZ00098         41 TTKILSD-IELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKK--D  112 (263)
T ss_pred             HHHHHHh-CCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccC--C
Confidence            3344433 355677899999999999999998753  57999999999999999987643   35789999987542  1


Q ss_pred             HhhcccCCCceeEEEEeC---C--ccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           88 LLKYSENEGSFDYAFVDA---D--KDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        88 ~~~~~~~~~~~D~i~id~---~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      +     ..++||+|++..   +  ..+...+++++.++|||||.+++.+...
T Consensus       113 ~-----~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~  159 (263)
T PTZ00098        113 F-----PENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCA  159 (263)
T ss_pred             C-----CCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence            1     146899999842   1  1356789999999999999999987654

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.51  E-value=9.7e-13  Score=101.81  Aligned_cols=118  Identities=19%  Similarity=0.271  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHH-HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029764            6 PDAGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   84 (188)
Q Consensus         6 ~~~~~~l~~l~~-~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   84 (188)
                      |.+...|.++-. ..++++|||+|||+|..++..++.-  ..+++++|++|.+++.+++|++.+++...++....+..+.
T Consensus       147 pTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLG--A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~  224 (300)
T COG2264         147 PTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLG--AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV  224 (300)
T ss_pred             hhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcC--CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh
Confidence            344444554443 3377899999999999999988753  4679999999999999999999998875333333333222


Q ss_pred             HHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           85 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        85 ~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      .        ..++||+|+.+.-..-...+...+.++++|||.++++..+
T Consensus       225 ~--------~~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl  265 (300)
T COG2264         225 P--------ENGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGIL  265 (300)
T ss_pred             c--------ccCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeeh
Confidence            1        1369999998865555667888889999999999998765

>PRK14968 putative methyltransferase; Provisional

Probab=99.50  E-value=5.4e-13  Score=97.75  Aligned_cols=110  Identities=16%  Similarity=0.235  Sum_probs=85.5

Q ss_pred             HHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCc-EEEEEcchHHHHHHH
Q 029764           10 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK-INFIESEALSVLDQL   88 (188)
Q Consensus        10 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~-~~~~~~d~~~~~~~~   88 (188)
                      .+|...+...++++|||+|||+|..+..++..   +.+++++|.++++++.+++++...++.++ +.++++|..+.+.  
T Consensus        13 ~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--   87 (188)
T PRK14968         13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR--   87 (188)
T ss_pred             HHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc--
Confidence            44444444567789999999999999999886   57999999999999999999988777544 8888888765321  


Q ss_pred             hhcccCCCceeEEEEeCCc------------------------cchHHHHHHHHhccCcCeEEEEe
Q 029764           89 LKYSENEGSFDYAFVDADK------------------------DNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        89 ~~~~~~~~~~D~i~id~~~------------------------~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                            ..+||+|+.+...                        .....+++++.+.|+|||.+++.
T Consensus        88 ------~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~  147 (188)
T PRK14968         88 ------GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLL  147 (188)
T ss_pred             ------ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEE
Confidence                  2489999976421                        11345789999999999988764

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.50  E-value=3.6e-14  Score=103.58  Aligned_cols=98  Identities=23%  Similarity=0.266  Sum_probs=84.3

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..++.+|.|+|||.|.++..+++.+| +..|+++|.|++|++.|++..      .+++|..+|..+.-+        ...
T Consensus        28 ~~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~p--------~~~   92 (257)
T COG4106          28 LERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWKP--------EQP   92 (257)
T ss_pred             ccccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcCC--------CCc
Confidence            45667999999999999999999998 999999999999999997764      468999999876532        468


Q ss_pred             eeEEEEeC---CccchHHHHHHHHhccCcCeEEEEe
Q 029764           98 FDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        98 ~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      .|++|.++   +..+....+.+++..|.|||++-+.
T Consensus        93 ~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQ  128 (257)
T COG4106          93 TDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQ  128 (257)
T ss_pred             cchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEE
Confidence            99999885   4456678899999999999999885

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.50  E-value=2.8e-13  Score=105.90  Aligned_cols=100  Identities=19%  Similarity=0.283  Sum_probs=80.9

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      ...++.+|||+|||+|..+.+++..   +.+|+++|+++.+++.++++.+..++  ++++...|....  .+      .+
T Consensus       117 ~~~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~--~~------~~  183 (287)
T PRK12335        117 QTVKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSA--SI------QE  183 (287)
T ss_pred             hccCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcc--cc------cC
Confidence            3456679999999999999999984   67999999999999999999888776  578888876542  11      37


Q ss_pred             ceeEEEEeC-----CccchHHHHHHHHhccCcCeEEEE
Q 029764           97 SFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        97 ~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      +||+|++..     +......+++++.+.|+|||++++
T Consensus       184 ~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~  221 (287)
T PRK12335        184 EYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLI  221 (287)
T ss_pred             CccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence            899998763     223567789999999999999665

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.49  E-value=4.6e-13  Score=101.61  Aligned_cols=109  Identities=17%  Similarity=0.299  Sum_probs=88.5

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..++.+|||+|||+|..+..++...+...+++++|+++.+++.+++++...+..+++.++.+|+.+..  .     ..++
T Consensus        49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~-----~~~~  121 (239)
T PRK00216         49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP--F-----PDNS  121 (239)
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC--C-----CCCC
Confidence            33567999999999999999999875468999999999999999999877666667899999886532  1     1468


Q ss_pred             eeEEEEeC---CccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           98 FDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        98 ~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      ||+|++..   ...+...+++.+.+.|++||.+++.+..
T Consensus       122 ~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~  160 (239)
T PRK00216        122 FDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFS  160 (239)
T ss_pred             ccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEec
Confidence            99998763   3446678899999999999999886543

>PRK08317 hypothetical protein; Provisional

Probab=99.49  E-value=6.2e-13  Score=100.77  Aligned_cols=113  Identities=19%  Similarity=0.320  Sum_probs=88.7

Q ss_pred             HHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029764           14 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   93 (188)
Q Consensus        14 ~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   93 (188)
                      ..+...++.+|||+|||+|..+..++..+.+.++++++|+++.++..++++...  ...++.++.+|..+..  +     
T Consensus        13 ~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~~~~d~~~~~--~-----   83 (241)
T PRK08317         13 ELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG--LGPNVEFVRGDADGLP--F-----   83 (241)
T ss_pred             HHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC--CCCceEEEecccccCC--C-----
Confidence            344566778999999999999999999874478999999999999999987332  2356889888875421  1     


Q ss_pred             CCCceeEEEEeC---CccchHHHHHHHHhccCcCeEEEEeccccC
Q 029764           94 NEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLWG  135 (188)
Q Consensus        94 ~~~~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  135 (188)
                      ..++||+|++..   +..+...+++.+.++|+|||.+++.+..+.
T Consensus        84 ~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  128 (241)
T PRK08317         84 PDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWD  128 (241)
T ss_pred             CCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCC
Confidence            147899999874   335667899999999999999999776543

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.49  E-value=6.2e-13  Score=107.33  Aligned_cols=118  Identities=17%  Similarity=0.253  Sum_probs=90.7

Q ss_pred             CcHHHHHHHHHHHHH-cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchH
Q 029764            4 TAPDAGQLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   82 (188)
Q Consensus         4 ~~~~~~~~l~~l~~~-~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   82 (188)
                      ..+++..++..+... .+..+|||+|||+|..++.++...+ +.+++++|+++++++.|++|++..+.  +++++++|..
T Consensus       234 PRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~  310 (423)
T PRK14966        234 PRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGA--RVEFAHGSWF  310 (423)
T ss_pred             CCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchh
Confidence            457788888877653 3456999999999999999998766 78999999999999999999988764  6999999986


Q ss_pred             HHHHHHhhcccCCCceeEEEEeCCc----------------------------cchHHHHHHHHhccCcCeEEEEe
Q 029764           83 SVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        83 ~~~~~~~~~~~~~~~~D~i~id~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      +....      ..++||+|+++.+.                            ..+..+++.+.+.|+|||.+++.
T Consensus       311 e~~l~------~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilE  380 (423)
T PRK14966        311 DTDMP------SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLE  380 (423)
T ss_pred             ccccc------cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            53111      13579999997421                            01234566667899999998873

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.49  E-value=1.1e-12  Score=100.52  Aligned_cols=115  Identities=15%  Similarity=0.096  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHHc----CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch
Q 029764            6 PDAGQLMAMLLRLV----NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   81 (188)
Q Consensus         6 ~~~~~~l~~l~~~~----~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   81 (188)
                      +++..++.......    ++.+|||+|||+|..++.++...+ +.+++++|+++++++.|++|+..++    .+++++|.
T Consensus        68 ~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~  142 (251)
T TIGR03704        68 RRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAG----GTVHEGDL  142 (251)
T ss_pred             ccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeec
Confidence            45555665554432    235899999999999999998776 6799999999999999999988765    36888998


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCcc-----------------------------chHHHHHHHHhccCcCeEEEEe
Q 029764           82 LSVLDQLLKYSENEGSFDYAFVDADKD-----------------------------NYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        82 ~~~~~~~~~~~~~~~~~D~i~id~~~~-----------------------------~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      .+.++...     .++||+|++|.+..                             .+..+++.+.++|++||.+++.
T Consensus       143 ~~~l~~~~-----~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~  215 (251)
T TIGR03704       143 YDALPTAL-----RGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE  215 (251)
T ss_pred             hhhcchhc-----CCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            76543321     25799999985311                             0235666777999999999875

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK06922 hypothetical protein; Provisional

Probab=99.49  E-value=7.4e-13  Score=111.57  Aligned_cols=114  Identities=16%  Similarity=0.245  Sum_probs=88.8

Q ss_pred             HHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcc
Q 029764           13 AMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS   92 (188)
Q Consensus        13 ~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~   92 (188)
                      ..+....++.+|||+|||+|..+..++...+ +.+++++|+++.+++.|+++....+  .++.++++|+.+....+    
T Consensus       411 ~~i~d~~~g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~f----  483 (677)
T PRK06922        411 RIILDYIKGDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSF----  483 (677)
T ss_pred             HHHhhhcCCCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCcccc----
Confidence            3445566788999999999999999998876 8899999999999999998876544  35788899987632112    


Q ss_pred             cCCCceeEEEEeCC----------------ccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           93 ENEGSFDYAFVDAD----------------KDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        93 ~~~~~~D~i~id~~----------------~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                       ..++||+|++...                ......+++.+.+.|||||.+++.+...
T Consensus       484 -edeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~  540 (677)
T PRK06922        484 -EKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIM  540 (677)
T ss_pred             -CCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCcc
Confidence             2478999986521                1245678899999999999999977544

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.49  E-value=2.7e-13  Score=112.98  Aligned_cols=115  Identities=17%  Similarity=0.252  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029764            8 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   87 (188)
Q Consensus         8 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   87 (188)
                      +..++..+ ...++.+|||||||+|..+..++...  +.+++++|+++++++.|+++..  +...+++++++|..+.  .
T Consensus       255 te~l~~~~-~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~--~  327 (475)
T PLN02336        255 TKEFVDKL-DLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKK--T  327 (475)
T ss_pred             HHHHHHhc-CCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccC--C
Confidence            34444443 34567799999999999999999865  5799999999999999998765  3345789999997653  1


Q ss_pred             HhhcccCCCceeEEEEeC---CccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           88 LLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        88 ~~~~~~~~~~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      +     ..++||+|++..   +..+...+++.+.++|+|||.+++.+...
T Consensus       328 ~-----~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~  372 (475)
T PLN02336        328 Y-----PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCR  372 (475)
T ss_pred             C-----CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence            1     136899999863   34566789999999999999999987654

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.48  E-value=1.6e-12  Score=95.04  Aligned_cols=123  Identities=22%  Similarity=0.273  Sum_probs=91.9

Q ss_pred             CcHHHHHHHHHHHHH-cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchH
Q 029764            4 TAPDAGQLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   82 (188)
Q Consensus         4 ~~~~~~~~l~~l~~~-~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   82 (188)
                      +..-...+..++... .++.++||+.||+|..++..++.-  ..+++.||.+++.+...++|++..+..++++++..|+.
T Consensus        25 ~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~  102 (183)
T PF03602_consen   25 TDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAF  102 (183)
T ss_dssp             SHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHH
T ss_pred             cHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHH
Confidence            344445555666556 788999999999999999877652  36999999999999999999999998888999999998


Q ss_pred             HHHHHHhhcccCCCceeEEEEeCCcc--c-hHHHHHHHH--hccCcCeEEEEec
Q 029764           83 SVLDQLLKYSENEGSFDYAFVDADKD--N-YCNYHERLM--KLLKVGGIAVYDN  131 (188)
Q Consensus        83 ~~~~~~~~~~~~~~~~D~i~id~~~~--~-~~~~~~~~~--~~L~~gG~lv~~~  131 (188)
                      ..+..+...   ..+||+||+|.+..  . +...++.+.  .+|+++|++++..
T Consensus       103 ~~l~~~~~~---~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~  153 (183)
T PF03602_consen  103 KFLLKLAKK---GEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEH  153 (183)
T ss_dssp             HHHHHHHHC---TS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred             HHHHhhccc---CCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence            888766432   57999999997533  2 366777776  7999999999864

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.48  E-value=1.5e-12  Score=100.84  Aligned_cols=114  Identities=23%  Similarity=0.363  Sum_probs=86.6

Q ss_pred             HHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCC-CcEEEEEcchHHHHHHHhhcc
Q 029764           14 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYS   92 (188)
Q Consensus        14 ~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~   92 (188)
                      ++....++++||++.|.+|..++..+..-  ..++++||.+..+++.+++|++.+++. .+++++.+|+.+.+..+..  
T Consensus       117 ~v~~~~~gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~--  192 (286)
T PF10672_consen  117 WVRKYAKGKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKK--  192 (286)
T ss_dssp             HHHHHCTTCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHH--
T ss_pred             HHHHHcCCCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhc--
Confidence            34456678999999999999999877642  358999999999999999999999986 6799999999998876543  


Q ss_pred             cCCCceeEEEEeCCc---------cchHHHHHHHHhccCcCeEEEEeccc
Q 029764           93 ENEGSFDYAFVDADK---------DNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        93 ~~~~~~D~i~id~~~---------~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                        .++||+|++|.+.         .++..++..+.++|+|||.+++....
T Consensus       193 --~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs  240 (286)
T PF10672_consen  193 --GGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS  240 (286)
T ss_dssp             --TT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred             --CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence              4799999999632         34667888889999999998876443

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.48  E-value=2.5e-13  Score=98.54  Aligned_cols=112  Identities=20%  Similarity=0.324  Sum_probs=80.8

Q ss_pred             HHHHHHHHHH-HHcCC--CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029764            7 DAGQLMAMLL-RLVNA--KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   83 (188)
Q Consensus         7 ~~~~~l~~l~-~~~~~--~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   83 (188)
                      |..+.-+.+. ...++  .++||+|||.|..+..||...   .+++++|+++.+++.|++.+...   +++++++.+..+
T Consensus        27 E~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~  100 (201)
T PF05401_consen   27 ERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGL---PHVEWIQADVPE  100 (201)
T ss_dssp             HHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT
T ss_pred             HHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCC
Confidence            3334444443 34444  489999999999999999874   49999999999999999988654   379999999977


Q ss_pred             HHHHHhhcccCCCceeEEEEeC------CccchHHHHHHHHhccCcCeEEEEecc
Q 029764           84 VLDQLLKYSENEGSFDYAFVDA------DKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        84 ~~~~~~~~~~~~~~~D~i~id~------~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      ..+        .++||+|++..      +......+++.+...|+|||.+|+...
T Consensus       101 ~~P--------~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~  147 (201)
T PF05401_consen  101 FWP--------EGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA  147 (201)
T ss_dssp             -----------SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCC--------CCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            644        48999999873      123456788999999999999999543

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.48  E-value=9.8e-13  Score=105.51  Aligned_cols=103  Identities=24%  Similarity=0.317  Sum_probs=86.1

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   99 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   99 (188)
                      ....+||||||+|..+..+|...| +..++++|+++.++..+.+++...++. ++.++++|+...+..+     ..+++|
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll~~~-----~~~s~D  194 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLLELL-----PSNSVE  194 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhhhhC-----CCCcee
Confidence            446899999999999999999987 889999999999999999999888875 5999999997765443     257999


Q ss_pred             EEEEeCCc---cc------hHHHHHHHHhccCcCeEEEE
Q 029764          100 YAFVDADK---DN------YCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus       100 ~i~id~~~---~~------~~~~~~~~~~~L~~gG~lv~  129 (188)
                      .|++..+.   ..      ...+++.+.++|++||.+.+
T Consensus       195 ~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l  233 (390)
T PRK14121        195 KIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLEL  233 (390)
T ss_pred             EEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEE
Confidence            99986421   11      25789999999999998887

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.47  E-value=4.6e-13  Score=97.91  Aligned_cols=114  Identities=17%  Similarity=0.260  Sum_probs=83.6

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029764            5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   84 (188)
Q Consensus         5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   84 (188)
                      .+...+++.. +...++.++||+|||.|+.+++||+.   +-.|+++|.++..++.+++..+..+++  ++....|..+.
T Consensus        16 ~~~hs~v~~a-~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~   89 (192)
T PF03848_consen   16 TPTHSEVLEA-VPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDF   89 (192)
T ss_dssp             ----HHHHHH-CTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCB
T ss_pred             CCCcHHHHHH-HhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhc
Confidence            3455555554 45667889999999999999999996   789999999999999999988887764  88888887543


Q ss_pred             HHHHhhcccCCCceeEEEEeC-----CccchHHHHHHHHhccCcCeEEEEecc
Q 029764           85 LDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        85 ~~~~~~~~~~~~~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                        .+      .+.||+|+...     ..+....+++.+...++|||++++...
T Consensus        90 --~~------~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~  134 (192)
T PF03848_consen   90 --DF------PEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF  134 (192)
T ss_dssp             --S-------TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             --cc------cCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence              12      36899998652     345567789999999999999887543

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.47  E-value=5.8e-13  Score=103.43  Aligned_cols=116  Identities=24%  Similarity=0.418  Sum_probs=88.9

Q ss_pred             cHHHHHHHHHHHH---HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch
Q 029764            5 APDAGQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   81 (188)
Q Consensus         5 ~~~~~~~l~~l~~---~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   81 (188)
                      .+++..++..+..   ..++.+|||+|||+|..+..++...+ ..+++++|+++.+++.+++++. .....++.++.+|.
T Consensus        90 r~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~  167 (275)
T PRK09328         90 RPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDW  167 (275)
T ss_pred             CCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccc
Confidence            3555666666552   34667999999999999999999886 7899999999999999999987 33345799999987


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCc-----------------------------cchHHHHHHHHhccCcCeEEEEe
Q 029764           82 LSVLDQLLKYSENEGSFDYAFVDADK-----------------------------DNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        82 ~~~~~~~~~~~~~~~~~D~i~id~~~-----------------------------~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      .+...        .++||+|+++.+.                             ..+..+++.+.++|++||.+++.
T Consensus       168 ~~~~~--------~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e  237 (275)
T PRK09328        168 FEPLP--------GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE  237 (275)
T ss_pred             cCcCC--------CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence            44221        2689999986321                             11345677778999999999984

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.47  E-value=6.4e-13  Score=105.80  Aligned_cols=115  Identities=18%  Similarity=0.215  Sum_probs=92.3

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029764            5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   84 (188)
Q Consensus         5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   84 (188)
                      .+..+..|..++...++.+|||+|||+|..++..+..   +.+++++|++++++..+++|++..++.+ +.+.++|+.+.
T Consensus       167 ~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l  242 (329)
T TIGR01177       167 DPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKL  242 (329)
T ss_pred             CHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcC
Confidence            4556666766777778889999999999998886653   6799999999999999999999988876 88899998763


Q ss_pred             HHHHhhcccCCCceeEEEEeCCc------------cchHHHHHHHHhccCcCeEEEEe
Q 029764           85 LDQLLKYSENEGSFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        85 ~~~~~~~~~~~~~~D~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                       +.      ..++||+|++|.+.            ..+..+++.+.+.|+|||.+++.
T Consensus       243 -~~------~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~  293 (329)
T TIGR01177       243 -PL------SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA  293 (329)
T ss_pred             -Cc------ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence             11      13689999998421            12467889999999999998874

This family is found exclusively in the Archaea.

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.47  E-value=1.2e-12  Score=97.34  Aligned_cols=106  Identities=18%  Similarity=0.227  Sum_probs=79.2

Q ss_pred             HHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           15 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        15 l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      +....++.+|||+|||+|..+..++...+ +.+++++|+++++++.|++++      +++.+.++|+.+  + +     .
T Consensus        38 l~~~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~------~~~~~~~~d~~~--~-~-----~  102 (204)
T TIGR03587        38 LNRLPKIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYL------PNINIIQGSLFD--P-F-----K  102 (204)
T ss_pred             HHhcCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhC------CCCcEEEeeccC--C-C-----C
Confidence            33455777999999999999999988765 789999999999999998864      236777888765  1 1     2


Q ss_pred             CCceeEEEEeCC-----ccchHHHHHHHHhccCcCeEEEEeccccCcc
Q 029764           95 EGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLWGGT  137 (188)
Q Consensus        95 ~~~~D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~  137 (188)
                      .++||+|++...     +.....+++++.+.+  ++.+++.+...+..
T Consensus       103 ~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~~~  148 (204)
T TIGR03587       103 DNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNPSP  148 (204)
T ss_pred             CCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCCCc
Confidence            579999998652     223466778887876  56777777654443

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.47  E-value=5.8e-12  Score=92.62  Aligned_cols=123  Identities=11%  Similarity=0.016  Sum_probs=92.7

Q ss_pred             CcHHHHHHHHHHHHH----cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc
Q 029764            4 TAPDAGQLMAMLLRL----VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   79 (188)
Q Consensus         4 ~~~~~~~~l~~l~~~----~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~   79 (188)
                      +.|...++...+...    .++.++||++||+|..++.+++..  ..+++++|.+++.++.+++|++..++.++++++.+
T Consensus        29 ~rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srg--a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~  106 (189)
T TIGR00095        29 TRPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRG--AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRN  106 (189)
T ss_pred             CCCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCC--CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEeh
Confidence            345555555554443    467899999999999999998863  24899999999999999999999988778999999


Q ss_pred             chHHHHHHHhhcccCCCceeEEEEeCCcc--chHHHHHHHH--hccCcCeEEEEec
Q 029764           80 EALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLM--KLLKVGGIAVYDN  131 (188)
Q Consensus        80 d~~~~~~~~~~~~~~~~~~D~i~id~~~~--~~~~~~~~~~--~~L~~gG~lv~~~  131 (188)
                      |+.+.+..+...   ...||+||.|.+..  .+...++.+.  .+|+++|++|+..
T Consensus       107 D~~~~l~~~~~~---~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~  159 (189)
T TIGR00095       107 SALRALKFLAKK---PTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEE  159 (189)
T ss_pred             hHHHHHHHhhcc---CCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence            998876554211   23489999997542  3445555554  4799999999863

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.47  E-value=8.3e-13  Score=102.63  Aligned_cols=116  Identities=20%  Similarity=0.385  Sum_probs=89.0

Q ss_pred             cHHHHHHHHHHH-HHcCCC-EEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchH
Q 029764            5 APDAGQLMAMLL-RLVNAK-KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   82 (188)
Q Consensus         5 ~~~~~~~l~~l~-~~~~~~-~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   82 (188)
                      .+++..++..+. ...... +|||+|||+|..++.++...+ ..+|+++|+|+++++.|++|...+++ .++.++.+|.+
T Consensus        93 r~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf  170 (280)
T COG2890          93 RPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLF  170 (280)
T ss_pred             CCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecc
Confidence            567777777743 222222 799999999999999999987 78999999999999999999999998 56666677665


Q ss_pred             HHHHHHhhcccCCCceeEEEEeCC---cc-------------------------chHHHHHHHHhccCcCeEEEEec
Q 029764           83 SVLDQLLKYSENEGSFDYAFVDAD---KD-------------------------NYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        83 ~~~~~~~~~~~~~~~~D~i~id~~---~~-------------------------~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      +-+         .++||+|+++.+   ..                         .+..+++.+...|++||++++.-
T Consensus       171 ~~~---------~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~  238 (280)
T COG2890         171 EPL---------RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI  238 (280)
T ss_pred             ccc---------CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE
Confidence            432         358999987631   11                         13456677778999999999863

>PRK14967 putative methyltransferase; Provisional

Probab=99.47  E-value=1.6e-12  Score=98.12  Aligned_cols=101  Identities=17%  Similarity=0.187  Sum_probs=79.4

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..+..+|||+|||+|..+..++.. . ..+++++|+++++++.+++++...+.  ++.++.+|..+.++        .++
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~--------~~~  101 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVE--------FRP  101 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhcc--------CCC
Confidence            345679999999999999998875 2 35999999999999999999987775  47888888765321        368


Q ss_pred             eeEEEEeCCcc------------------------chHHHHHHHHhccCcCeEEEEe
Q 029764           98 FDYAFVDADKD------------------------NYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        98 ~D~i~id~~~~------------------------~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ||+|+++.+..                        ....+++.+.++|++||.+++.
T Consensus       102 fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~  158 (223)
T PRK14967        102 FDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV  158 (223)
T ss_pred             eeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            99999974211                        1345677888999999999873

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.46  E-value=9.2e-13  Score=104.43  Aligned_cols=108  Identities=16%  Similarity=0.187  Sum_probs=82.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++++|||||||+|+.+..++...+  ..|+++|+++.++..++......+...++.++.++..+. +.       .++|
T Consensus       121 l~g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l-p~-------~~~F  190 (322)
T PRK15068        121 LKGRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQL-PA-------LKAF  190 (322)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHC-CC-------cCCc
Confidence            4568999999999999999998643  469999999988865544323223235789999988654 11       3789


Q ss_pred             eEEEEeC---CccchHHHHHHHHhccCcCeEEEEeccccCc
Q 029764           99 DYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLWGG  136 (188)
Q Consensus        99 D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  136 (188)
                      |+|++-+   +..+...+++++.+.|+|||.+++++....+
T Consensus       191 D~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~  231 (322)
T PRK15068        191 DTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDG  231 (322)
T ss_pred             CEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecC
Confidence            9999864   3356778999999999999999998765544

>PLN02823 spermine synthase

Probab=99.46  E-value=1.1e-12  Score=104.06  Aligned_cols=106  Identities=18%  Similarity=0.191  Sum_probs=85.6

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcC--C-CCcEEEEEcchHHHHHHHhhcccC
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~-~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      ..++++||.||+|.|..+..+++..+ ..++++||++++.++.+++.+...+  + .++++++.+|+..++...      
T Consensus       101 ~~~pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~------  173 (336)
T PLN02823        101 HPNPKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR------  173 (336)
T ss_pred             CCCCCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC------
Confidence            44678999999999999999888643 5789999999999999999876432  1 368999999999987543      


Q ss_pred             CCceeEEEEeCCcc---------chHHHHH-HHHhccCcCeEEEEe
Q 029764           95 EGSFDYAFVDADKD---------NYCNYHE-RLMKLLKVGGIAVYD  130 (188)
Q Consensus        95 ~~~~D~i~id~~~~---------~~~~~~~-~~~~~L~~gG~lv~~  130 (188)
                      .++||+||+|...+         ...++++ .+.+.|+|||++++.
T Consensus       174 ~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q  219 (336)
T PLN02823        174 DEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ  219 (336)
T ss_pred             CCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence            47899999995221         1346787 889999999999875

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=99.46  E-value=5e-12  Score=97.85  Aligned_cols=107  Identities=22%  Similarity=0.310  Sum_probs=90.5

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcC--C-CCcEEEEEcchHHHHHHHhhcccC
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~-~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      ..++++||-||.|.|..+..++++.+ ..+++.||++++.++.+++.+....  . .++++++.+|+.+++...      
T Consensus        74 h~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~------  146 (282)
T COG0421          74 HPNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC------  146 (282)
T ss_pred             CCCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC------
Confidence            33447999999999999999999875 6799999999999999999987653  2 378999999999998875      


Q ss_pred             CCceeEEEEeCCcc-c------hHHHHHHHHhccCcCeEEEEec
Q 029764           95 EGSFDYAFVDADKD-N------YCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        95 ~~~~D~i~id~~~~-~------~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      ..+||+|++|.... .      ..++++.|.+.|+++|+++...
T Consensus       147 ~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~  190 (282)
T COG0421         147 EEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA  190 (282)
T ss_pred             CCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence            35899999996322 2      3789999999999999999973

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.45  E-value=1e-12  Score=104.85  Aligned_cols=111  Identities=19%  Similarity=0.224  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764            7 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   86 (188)
Q Consensus         7 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   86 (188)
                      .+..++..+.. ....+|||+|||+|..+..+++..+ ..+++++|+++.+++.++++++.+++.  .+++.+|..+.  
T Consensus       184 gt~lLl~~l~~-~~~g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~--  257 (342)
T PRK09489        184 GSQLLLSTLTP-HTKGKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD--  257 (342)
T ss_pred             HHHHHHHhccc-cCCCeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc--
Confidence            34455554443 3345899999999999999998876 779999999999999999999988764  46677776432  


Q ss_pred             HHhhcccCCCceeEEEEeCCc--------cchHHHHHHHHhccCcCeEEEEe
Q 029764           87 QLLKYSENEGSFDYAFVDADK--------DNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        87 ~~~~~~~~~~~~D~i~id~~~--------~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                       .      .+.||+|+++.+.        .....++..+.+.|+|||.+++.
T Consensus       258 -~------~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iV  302 (342)
T PRK09489        258 -I------KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIV  302 (342)
T ss_pred             -c------CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence             1      3689999997532        23467889999999999988663

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.45  E-value=1.6e-14  Score=95.33  Aligned_cols=96  Identities=24%  Similarity=0.347  Sum_probs=62.2

Q ss_pred             EEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEe
Q 029764           25 IEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD  104 (188)
Q Consensus        25 LeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id  104 (188)
                      ||+|||+|..+..++..++ ..+++++|+++.+++.+++++....... ......+..+.....     ..++||+|++.
T Consensus         1 LdiGcG~G~~~~~l~~~~~-~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~fD~V~~~   73 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELP-DARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDLFDYD-----PPESFDLVVAS   73 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CC-----C----SEEEEE
T ss_pred             CEeCccChHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCChhhcc-----cccccceehhh
Confidence            7999999999999999986 8899999999999999999888876432 333343333332211     12599999987


Q ss_pred             C---CccchHHHHHHHHhccCcCeEE
Q 029764          105 A---DKDNYCNYHERLMKLLKVGGIA  127 (188)
Q Consensus       105 ~---~~~~~~~~~~~~~~~L~~gG~l  127 (188)
                      .   +..+...+++++.++|+|||.+
T Consensus        74 ~vl~~l~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   74 NVLHHLEDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             -TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred             hhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence            4   3356778999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.45  E-value=6.3e-13  Score=102.00  Aligned_cols=98  Identities=15%  Similarity=0.228  Sum_probs=77.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++.+|||+|||+|..+..++..   +.+++++|+++++++.++++..      ...++++|..+. + +     ..++|
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~-~-~-----~~~~f  104 (251)
T PRK10258         41 RKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESL-P-L-----ATATF  104 (251)
T ss_pred             cCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccC-c-C-----CCCcE
Confidence            34679999999999999888764   5799999999999999988642      245778887543 1 1     14689


Q ss_pred             eEEEEeC---CccchHHHHHHHHhccCcCeEEEEecc
Q 029764           99 DYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        99 D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      |+|+...   +..+....+.++.+.|+|||.+++...
T Consensus       105 D~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~  141 (251)
T PRK10258        105 DLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTL  141 (251)
T ss_pred             EEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence            9999864   345677889999999999999998743

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.45  E-value=4.6e-12  Score=100.34  Aligned_cols=103  Identities=12%  Similarity=0.054  Sum_probs=81.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++.+|||+|||+|..++.+|..   +.+|+++|.++++++.|+++++.+++ ++++++++|+.+.....      .+.|
T Consensus       172 ~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~------~~~~  241 (315)
T PRK03522        172 LPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQ------GEVP  241 (315)
T ss_pred             cCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhc------CCCC
Confidence            45689999999999999999984   56999999999999999999999888 57999999998765432      3579


Q ss_pred             eEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           99 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      |+|++|.+.......+......+++++++++..
T Consensus       242 D~Vv~dPPr~G~~~~~~~~l~~~~~~~ivyvsc  274 (315)
T PRK03522        242 DLVLVNPPRRGIGKELCDYLSQMAPRFILYSSC  274 (315)
T ss_pred             eEEEECCCCCCccHHHHHHHHHcCCCeEEEEEC
Confidence            999999765543333333445567787777653

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.44  E-value=1.3e-12  Score=99.06  Aligned_cols=101  Identities=21%  Similarity=0.331  Sum_probs=81.5

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   99 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   99 (188)
                      ++.+|||+|||+|..+..++...+ ..+++++|++++++..+++...     +++.++.+|..+..  +     ..++||
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~--~-----~~~~fD  100 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLP--L-----EDSSFD  100 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCC--C-----CCCcee
Confidence            456999999999999999999876 6789999999999998887653     36788889886531  1     146899


Q ss_pred             EEEEeCC---ccchHHHHHHHHhccCcCeEEEEeccc
Q 029764          100 YAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus       100 ~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      +|++...   ..+...+++.+.++|++||.+++....
T Consensus       101 ~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~  137 (240)
T TIGR02072       101 LIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFG  137 (240)
T ss_pred             EEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            9998742   345678899999999999999987543

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.44  E-value=1.2e-12  Score=100.76  Aligned_cols=112  Identities=21%  Similarity=0.240  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764            7 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   86 (188)
Q Consensus         7 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   86 (188)
                      -+.-+|..+.....+ +|||+|||.|..++.+++..| ..+++.+|.+..+++.+++|+..++..+. .++.+|..+-. 
T Consensus       146 GS~lLl~~l~~~~~~-~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~~~v-  221 (300)
T COG2813         146 GSRLLLETLPPDLGG-KVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLYEPV-  221 (300)
T ss_pred             HHHHHHHhCCccCCC-cEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEecccccc-
Confidence            344555555554444 899999999999999999987 89999999999999999999999887654 67777776532 


Q ss_pred             HHhhcccCCCceeEEEEeCCccc--------hHHHHHHHHhccCcCeEEEEe
Q 029764           87 QLLKYSENEGSFDYAFVDADKDN--------YCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        87 ~~~~~~~~~~~~D~i~id~~~~~--------~~~~~~~~~~~L~~gG~lv~~  130 (188)
                              .++||+|+++.+.+.        .++++....+.|++||.|.+-
T Consensus       222 --------~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iV  265 (300)
T COG2813         222 --------EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIV  265 (300)
T ss_pred             --------cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEE
Confidence                    258999999864322        247788889999999977663

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.43  E-value=2.5e-13  Score=101.95  Aligned_cols=100  Identities=19%  Similarity=0.216  Sum_probs=79.3

Q ss_pred             CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCC-----cEEEEEcchHHHHHHHhhcccCCC
Q 029764           22 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-----KINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      ++|||+|||+|-.+..||+.   +..|++||.++++++.|++.....+..+     ++++.+.++.+.          -+
T Consensus        91 ~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~----------~~  157 (282)
T KOG1270|consen   91 MKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL----------TG  157 (282)
T ss_pred             ceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc----------cc
Confidence            67999999999999999996   6799999999999999999833333222     255555555433          36


Q ss_pred             ceeEEEEeC---CccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           97 SFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        97 ~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      .||.|++.-   +..+++++++.+.++|+|||.+++.....
T Consensus       158 ~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinr  198 (282)
T KOG1270|consen  158 KFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINR  198 (282)
T ss_pred             ccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhh
Confidence            799999863   45567889999999999999999987554

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=99.43  E-value=1.7e-12  Score=95.33  Aligned_cols=162  Identities=16%  Similarity=0.223  Sum_probs=93.8

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhC---CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch
Q 029764            5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI---PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   81 (188)
Q Consensus         5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~---~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   81 (188)
                      .|.---.++.++...+|+.|+|+|...|.|++++|..+   ...++|++||++.....  ++.++..++.+++++++||+
T Consensus        17 ~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp~~~rI~~i~Gds   94 (206)
T PF04989_consen   17 YPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHPMSPRITFIQGDS   94 (206)
T ss_dssp             -HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES-S
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhccccCceEEEECCC
Confidence            45555667788889999999999999999999987644   34689999999755433  33344456678999999998


Q ss_pred             HH--HHHHHhhcccCCCceeEEEEeCC--ccchHHHHHHHHhccCcCeEEEEeccccCccccCC--CCCCCCCcccchHH
Q 029764           82 LS--VLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVP--EEQVPDHFRGSSRQ  155 (188)
Q Consensus        82 ~~--~~~~~~~~~~~~~~~D~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~--~~~~~~~~~~~~~~  155 (188)
                      .+  .+.+.... .......+|+.|++  +.+..+.++...+++++|+++|+.|..........  ..++.+...     
T Consensus        95 ~d~~~~~~v~~~-~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~~~w~~g~~-----  168 (206)
T PF04989_consen   95 IDPEIVDQVREL-ASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPDRPWGPGNN-----  168 (206)
T ss_dssp             SSTHHHHTSGSS-----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS-----------------
T ss_pred             CCHHHHHHHHHh-hccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEeccccccccccccccchhhhhH-----
Confidence            65  33332111 11245668888875  35677888889999999999999888764433331  122222222     


Q ss_pred             HHHHHHHHhhcCCCeEEEE
Q 029764          156 AILDLNRSLADDPRVQLSH  174 (188)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~  174 (188)
                      -.+++.+++..+++|+...
T Consensus       169 p~~av~~fL~~~~~f~iD~  187 (206)
T PF04989_consen  169 PKTAVKEFLAEHPDFEIDT  187 (206)
T ss_dssp             -HHHHHHHHHTTTTEEEET
T ss_pred             HHHHHHHHHHHCCCcEecc
Confidence            2677778889999976554

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>TIGR00452 methyltransferase, putative

Probab=99.42  E-value=2.2e-12  Score=101.51  Aligned_cols=109  Identities=14%  Similarity=0.109  Sum_probs=80.7

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..++++|||+|||+|+.+..++...+  ..|+++|+++.++..++..-...+...++.+...+..+. +.       ..+
T Consensus       119 ~~~g~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~l-p~-------~~~  188 (314)
T TIGR00452       119 PLKGRTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQL-HE-------LYA  188 (314)
T ss_pred             CCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHC-CC-------CCC
Confidence            35568999999999999988887532  479999999998876544322222234678888876543 21       358


Q ss_pred             eeEEEEeC---CccchHHHHHHHHhccCcCeEEEEeccccCc
Q 029764           98 FDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLWGG  136 (188)
Q Consensus        98 ~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  136 (188)
                      ||+||+.+   +..+....+.++.+.|+|||.+++......+
T Consensus       189 FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g  230 (314)
T TIGR00452       189 FDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDG  230 (314)
T ss_pred             cCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecC
Confidence            99999875   3456678999999999999999998765544

Known examples to date are restricted to the proteobacteria.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.41  E-value=7.1e-12  Score=95.09  Aligned_cols=113  Identities=19%  Similarity=0.249  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029764            9 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   88 (188)
Q Consensus         9 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   88 (188)
                      .+++.......++.+|||+|||+|..+..+++.   +.+++++|+++..++.+++++...+.  .+.++..+..+.....
T Consensus        37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~  111 (233)
T PRK05134         37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEH  111 (233)
T ss_pred             HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhc
Confidence            344444444556779999999999999988875   56899999999999999998877664  4778888876654221


Q ss_pred             hhcccCCCceeEEEEeC---CccchHHHHHHHHhccCcCeEEEEecc
Q 029764           89 LKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        89 ~~~~~~~~~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                            .++||+|++..   ...+...+++.+.+.|++||.+++...
T Consensus       112 ------~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~  152 (233)
T PRK05134        112 ------PGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTL  152 (233)
T ss_pred             ------CCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence                  47899998863   234567788999999999999998643

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.41  E-value=4.9e-12  Score=95.01  Aligned_cols=106  Identities=21%  Similarity=0.329  Sum_probs=85.1

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..++.+|||+|||+|..+..+++..+...+++++|+++.+++.+++++.   ...+++++.+|+.+..  +     ..++
T Consensus        37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~--~-----~~~~  106 (223)
T TIGR01934        37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALP--F-----EDNS  106 (223)
T ss_pred             cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCC--C-----CCCc
Confidence            3467899999999999999999988633799999999999999998875   2356889999886542  1     1368


Q ss_pred             eeEEEEeC---CccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           98 FDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        98 ~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      ||+|++..   +......+++.+.+.|+|||.+++.+..
T Consensus       107 ~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  145 (223)
T TIGR01934       107 FDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS  145 (223)
T ss_pred             EEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence            99998753   3456678899999999999999986654

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK03612 spermidine synthase; Provisional

Probab=99.41  E-value=3.1e-12  Score=107.49  Aligned_cols=107  Identities=19%  Similarity=0.320  Sum_probs=84.5

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHH--HHhc---CC-CCcEEEEEcchHHHHHHHhhc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPI--IKKA---GV-DHKINFIESEALSVLDQLLKY   91 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~--~~~~---~~-~~~~~~~~~d~~~~~~~~~~~   91 (188)
                      ..++++||+||||+|..+..++++ +...+++++|+|+++++.++++  +...   .+ .++++++.+|+.+.+...   
T Consensus       295 ~~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~---  370 (521)
T PRK03612        295 SARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL---  370 (521)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC---
Confidence            457889999999999999998875 4237999999999999999994  3321   12 257999999998877653   


Q ss_pred             ccCCCceeEEEEeCCccc--------hHHHHHHHHhccCcCeEEEEec
Q 029764           92 SENEGSFDYAFVDADKDN--------YCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        92 ~~~~~~~D~i~id~~~~~--------~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                         .++||+|++|.....        ..++++.+.+.|+|||.+++..
T Consensus       371 ---~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~  415 (521)
T PRK03612        371 ---AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS  415 (521)
T ss_pred             ---CCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence               478999999953221        2368899999999999999864

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.40  E-value=7.7e-12  Score=94.12  Aligned_cols=100  Identities=18%  Similarity=0.236  Sum_probs=79.6

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..++.+|||+|||+|..+..++..   +.+++++|++++++..|++++...+..+++++.++|+.+.          .++
T Consensus        53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----------~~~  119 (219)
T TIGR02021        53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL----------CGE  119 (219)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC----------CCC
Confidence            345789999999999999999874   5699999999999999999988777656799999998643          268


Q ss_pred             eeEEEEeC-----CccchHHHHHHHHhccCcCeEEEEe
Q 029764           98 FDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        98 ~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ||+|++..     ........+..+.+++++++++.+.
T Consensus       120 fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~  157 (219)
T TIGR02021       120 FDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA  157 (219)
T ss_pred             cCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence            99998642     1233456788888888887777764

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.40  E-value=4.6e-12  Score=102.60  Aligned_cols=102  Identities=16%  Similarity=0.180  Sum_probs=81.1

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      ...++.+|||||||+|..+..+++..  +.+|+++|+++++++.++++.+.  +  .+++...|..+.          .+
T Consensus       164 ~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~--l--~v~~~~~D~~~l----------~~  227 (383)
T PRK11705        164 QLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAG--L--PVEIRLQDYRDL----------NG  227 (383)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhcc--C--eEEEEECchhhc----------CC
Confidence            34577899999999999999999864  57999999999999999998743  2  377777876432          36


Q ss_pred             ceeEEEEeCC-----ccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           97 SFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        97 ~~D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      +||.|+....     ..++..+++.+.++|+|||.+++.....
T Consensus       228 ~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~  270 (383)
T PRK11705        228 QFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGS  270 (383)
T ss_pred             CCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence            8999986531     2345788999999999999999976543

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.40  E-value=3.8e-12  Score=96.11  Aligned_cols=121  Identities=19%  Similarity=0.327  Sum_probs=93.6

Q ss_pred             CcHHHHHHHHHHHHHc------CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEE
Q 029764            4 TAPDAGQLMAMLLRLV------NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI   77 (188)
Q Consensus         4 ~~~~~~~~l~~l~~~~------~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~   77 (188)
                      -.||+.+++.+.+...      ++..++|+|||+|..++.++..++ .+++++||.++.++..|.+|..++++.+++.++
T Consensus       126 PRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~  204 (328)
T KOG2904|consen  126 PRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVI  204 (328)
T ss_pred             cCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEE
Confidence            3678888888877533      344799999999999999999998 899999999999999999999999999999888


Q ss_pred             Ec----chHHHHHHHhhcccCCCceeEEEEeCC-----------------------------ccchHHHHHHHHhccCcC
Q 029764           78 ES----EALSVLDQLLKYSENEGSFDYAFVDAD-----------------------------KDNYCNYHERLMKLLKVG  124 (188)
Q Consensus        78 ~~----d~~~~~~~~~~~~~~~~~~D~i~id~~-----------------------------~~~~~~~~~~~~~~L~~g  124 (188)
                      +-    |..+..+-+      .+++|+++.+.+                             ...+..++..+.+.|++|
T Consensus       205 ~~~me~d~~~~~~l~------~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~g  278 (328)
T KOG2904|consen  205 HNIMESDASDEHPLL------EGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPG  278 (328)
T ss_pred             ecccccccccccccc------cCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccC
Confidence            54    433332221      578999986521                             011234556667999999


Q ss_pred             eEEEEec
Q 029764          125 GIAVYDN  131 (188)
Q Consensus       125 G~lv~~~  131 (188)
                      |.+.+.-
T Consensus       279 g~~~le~  285 (328)
T KOG2904|consen  279 GFEQLEL  285 (328)
T ss_pred             CeEEEEe
Confidence            9999864

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.40  E-value=4e-12  Score=100.93  Aligned_cols=100  Identities=16%  Similarity=0.138  Sum_probs=80.1

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   99 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   99 (188)
                      ++.+|||+|||+|..+..+++..+ ..+++++|.++++++.++++...    .+++++.+|+.+. + +     ..++||
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~l-p-~-----~~~sFD  180 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDL-P-F-----PTDYAD  180 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhC-C-C-----CCCcee
Confidence            556999999999999999988775 67999999999999999987542    3578899998653 1 1     146899


Q ss_pred             EEEEeC---CccchHHHHHHHHhccCcCeEEEEec
Q 029764          100 YAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus       100 ~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      +|++..   ...+....++++.++|+|||.+++.+
T Consensus       181 vVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~  215 (340)
T PLN02490        181 RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIG  215 (340)
T ss_pred             EEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence            999864   23355678999999999999988754

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.40  E-value=4.7e-12  Score=90.28  Aligned_cols=106  Identities=25%  Similarity=0.319  Sum_probs=77.9

Q ss_pred             HHHHHHHHHH-HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764            8 AGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   86 (188)
Q Consensus         8 ~~~~l~~l~~-~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   86 (188)
                      ..+++..+.. ..++.+|||+|||.|..+..++..   +.+++++|+++.+++.           .+......+..... 
T Consensus         9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~-   73 (161)
T PF13489_consen    9 YADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK-----------RNVVFDNFDAQDPP-   73 (161)
T ss_dssp             HHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH-----------TTSEEEEEECHTHH-
T ss_pred             HHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh-----------hhhhhhhhhhhhhh-
Confidence            4456666664 567789999999999999999765   4599999999999886           11222222222211 


Q ss_pred             HHhhcccCCCceeEEEEeC---CccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           87 QLLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        87 ~~~~~~~~~~~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      .      ..++||+|++..   +..+...+++.+.++|||||++++.....
T Consensus        74 ~------~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~  118 (161)
T PF13489_consen   74 F------PDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR  118 (161)
T ss_dssp             C------HSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred             c------cccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence            1      158999999875   34467889999999999999999987764

...

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.39  E-value=4.2e-12  Score=95.00  Aligned_cols=105  Identities=10%  Similarity=0.030  Sum_probs=75.4

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc-----------CCCCcEEEEEcchHHHHHHH
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-----------GVDHKINFIESEALSVLDQL   88 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-----------~~~~~~~~~~~d~~~~~~~~   88 (188)
                      ++.+||++|||.|..+++||..   +..|+++|+++.+++.+.+.....           .-..+++++++|..+.-...
T Consensus        34 ~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~  110 (213)
T TIGR03840        34 AGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD  110 (213)
T ss_pred             CCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence            5579999999999999999985   789999999999999764321100           00235888999987653221


Q ss_pred             hhcccCCCceeEEEEe-----CCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           89 LKYSENEGSFDYAFVD-----ADKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        89 ~~~~~~~~~~D~i~id-----~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                            .++||.|+-.     .++.....+++.+.++|+|||.+++....
T Consensus       111 ------~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~  154 (213)
T TIGR03840       111 ------LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLD  154 (213)
T ss_pred             ------CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence                  2568888643     23344567899999999999976665433

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.38  E-value=6.1e-12  Score=94.18  Aligned_cols=105  Identities=17%  Similarity=0.258  Sum_probs=87.7

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCC-----CCEEEEEeCCchhHHHHHHHHHhcCCCCc--EEEEEcchHHHHHHHhhcc
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPE-----DGQITAIDVNRETYEIGLPIIKKAGVDHK--INFIESEALSVLDQLLKYS   92 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~-----~~~v~~iD~~~~~~~~a~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~   92 (188)
                      +..++||++||+|..+..+.++.+.     +.+|+.+|++|++++.+++...+.++...  +.++.+|+.+. + +    
T Consensus       100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L-p-F----  173 (296)
T KOG1540|consen  100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL-P-F----  173 (296)
T ss_pred             CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC-C-C----
Confidence            3458999999999999999998863     28999999999999999999877777644  88999999664 2 2    


Q ss_pred             cCCCceeEEEEeC---CccchHHHHHHHHhccCcCeEEEEec
Q 029764           93 ENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        93 ~~~~~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                       +..+||...+..   +..+.+..+++++++|||||.+.+-+
T Consensus       174 -dd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLe  214 (296)
T KOG1540|consen  174 -DDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLE  214 (296)
T ss_pred             -CCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence             357899887764   56788999999999999999888743

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.38  E-value=2.4e-11  Score=98.28  Aligned_cols=117  Identities=14%  Similarity=0.100  Sum_probs=87.8

Q ss_pred             CCcHHHHHHHHH-HHH---HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE
Q 029764            3 GTAPDAGQLMAM-LLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE   78 (188)
Q Consensus         3 ~~~~~~~~~l~~-l~~---~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~   78 (188)
                      ++.+...+-|.. +..   ..++.+|||+|||+|..++.++..   +.+++++|+++++++.|++|.+.+++. +++++.
T Consensus       212 Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~  287 (374)
T TIGR02085       212 QTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLD-NLSFAA  287 (374)
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEE
Confidence            344555544433 322   245679999999999999999864   569999999999999999999998875 799999


Q ss_pred             cchHHHHHHHhhcccCCCceeEEEEeCCccc-hHHHHHHHHhccCcCeEEEEe
Q 029764           79 SEALSVLDQLLKYSENEGSFDYAFVDADKDN-YCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        79 ~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~-~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      +|+.+.+...      ..+||+|++|.+... ...+++.+. .++|++++++.
T Consensus       288 ~d~~~~~~~~------~~~~D~vi~DPPr~G~~~~~l~~l~-~~~p~~ivyvs  333 (374)
T TIGR02085       288 LDSAKFATAQ------MSAPELVLVNPPRRGIGKELCDYLS-QMAPKFILYSS  333 (374)
T ss_pred             CCHHHHHHhc------CCCCCEEEECCCCCCCcHHHHHHHH-hcCCCeEEEEE
Confidence            9998776432      256999999976543 344555554 57888887775

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PTZ00146 fibrillarin; Provisional

Probab=99.37  E-value=9.1e-12  Score=96.33  Aligned_cols=107  Identities=16%  Similarity=0.105  Sum_probs=77.7

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      .+.+..+|||+|||+|+.+..++....+.++|+++|+++++.+...+.....   +++.++.+|+..... ...   ..+
T Consensus       129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~-y~~---~~~  201 (293)
T PTZ00146        129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQK-YRM---LVP  201 (293)
T ss_pred             ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhh-hhc---ccC
Confidence            3567779999999999999999998865689999999987665444433221   468888999754211 100   135


Q ss_pred             ceeEEEEeCCccc-hHHHHHHHHhccCcCeEEEEe
Q 029764           97 SFDYAFVDADKDN-YCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        97 ~~D~i~id~~~~~-~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      .+|+||+|....+ ...++.++.+.|||||.+++.
T Consensus       202 ~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~  236 (293)
T PTZ00146        202 MVDVIFADVAQPDQARIVALNAQYFLKNGGHFIIS  236 (293)
T ss_pred             CCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEE
Confidence            7999999975433 334556788999999999983

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.36  E-value=6.5e-12  Score=97.53  Aligned_cols=94  Identities=20%  Similarity=0.263  Sum_probs=72.8

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCC--CEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPED--GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~--~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      +..+|||+|||+|..+..++...+..  ..++++|+++.+++.|+++.      +++.+.++|+.+. + +     ..++
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~l-p-~-----~~~s  151 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRL-P-F-----ADQS  151 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccC-C-C-----cCCc
Confidence            44689999999999999998876532  47999999999999988753      3578888887653 1 1     2478


Q ss_pred             eeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           98 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        98 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ||+|+....+    ..++++.+.|+|||.+++.
T Consensus       152 fD~I~~~~~~----~~~~e~~rvLkpgG~li~~  180 (272)
T PRK11088        152 LDAIIRIYAP----CKAEELARVVKPGGIVITV  180 (272)
T ss_pred             eeEEEEecCC----CCHHHHHhhccCCCEEEEE
Confidence            9999875433    2357788999999999975

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.36  E-value=2.3e-11  Score=100.52  Aligned_cols=105  Identities=14%  Similarity=0.155  Sum_probs=83.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++.+|||+|||+|..++.++..   ..+++++|+++++++.|++|++.+++. +++++.+|+.+.+....-   ...+|
T Consensus       296 ~~~~~VLDlgcGtG~~sl~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~d~~~~l~~~~~---~~~~f  368 (443)
T PRK13168        296 QPGDRVLDLFCGLGNFTLPLARQ---AAEVVGVEGVEAMVERARENARRNGLD-NVTFYHANLEEDFTDQPW---ALGGF  368 (443)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEeChHHhhhhhhh---hcCCC
Confidence            45579999999999999999986   359999999999999999999988875 599999999776533210   13579


Q ss_pred             eEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           99 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      |+|++|.+.....+.++.+.+ ++++++++++.
T Consensus       369 D~Vi~dPPr~g~~~~~~~l~~-~~~~~ivyvSC  400 (443)
T PRK13168        369 DKVLLDPPRAGAAEVMQALAK-LGPKRIVYVSC  400 (443)
T ss_pred             CEEEECcCCcChHHHHHHHHh-cCCCeEEEEEe
Confidence            999999766555666666655 68888877753

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=99.36  E-value=3.8e-11  Score=86.87  Aligned_cols=121  Identities=18%  Similarity=0.222  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHH-HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029764            6 PDAGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   84 (188)
Q Consensus         6 ~~~~~~l~~l~~-~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   84 (188)
                      .-...+..++.. ...+.++||+.+|+|..++..++..  ..+++.||.+.+.+...++|++..++..+.+++..|+...
T Consensus        28 rVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG--A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~  105 (187)
T COG0742          28 RVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRG--AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRA  105 (187)
T ss_pred             HHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCC--CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHH
Confidence            333444455555 3677899999999999999877753  4689999999999999999999999888899999999977


Q ss_pred             HHHHhhcccCCCceeEEEEeCCcc--chHHHHHHHH----hccCcCeEEEEecc
Q 029764           85 LDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLM----KLLKVGGIAVYDNT  132 (188)
Q Consensus        85 ~~~~~~~~~~~~~~D~i~id~~~~--~~~~~~~~~~----~~L~~gG~lv~~~~  132 (188)
                      ++.+..    .++||+||+|.+..  ........+.    ..|+|+|.+++...
T Consensus       106 L~~~~~----~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~  155 (187)
T COG0742         106 LKQLGT----REPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD  155 (187)
T ss_pred             HHhcCC----CCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence            776632    23599999997544  2211222222    67999999999643

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.36  E-value=3.4e-11  Score=99.32  Aligned_cols=104  Identities=15%  Similarity=0.117  Sum_probs=82.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++.+|||+|||+|..++.+++.   ..+|+++|+++++++.|++|+..+++. +++++.+|+.+.++.+...   ..+|
T Consensus       291 ~~~~~vLDl~cG~G~~sl~la~~---~~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~~d~~~~l~~~~~~---~~~~  363 (431)
T TIGR00479       291 QGEELVVDAYCGVGTFTLPLAKQ---AKSVVGIEVVPESVEKAQQNAELNGIA-NVEFLAGTLETVLPKQPWA---GQIP  363 (431)
T ss_pred             CCCCEEEEcCCCcCHHHHHHHHh---CCEEEEEEcCHHHHHHHHHHHHHhCCC-ceEEEeCCHHHHHHHHHhc---CCCC
Confidence            45579999999999999999986   358999999999999999999988874 6999999998776553211   3579


Q ss_pred             eEEEEeCCccc-hHHHHHHHHhccCcCeEEEEe
Q 029764           99 DYAFVDADKDN-YCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        99 D~i~id~~~~~-~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      |+|++|.+... ...+++.+. .+++++.+++.
T Consensus       364 D~vi~dPPr~G~~~~~l~~l~-~l~~~~ivyvs  395 (431)
T TIGR00479       364 DVLLLDPPRKGCAAEVLRTII-ELKPERIVYVS  395 (431)
T ss_pred             CEEEECcCCCCCCHHHHHHHH-hcCCCEEEEEc
Confidence            99999976544 456666654 47888877664

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.35  E-value=5.9e-12  Score=91.51  Aligned_cols=102  Identities=19%  Similarity=0.313  Sum_probs=79.9

Q ss_pred             EEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEE-EEEcchHHHHHHHhhcccCCCceeEE
Q 029764           23 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKIN-FIESEALSVLDQLLKYSENEGSFDYA  101 (188)
Q Consensus        23 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~D~i  101 (188)
                      .+||+|||+|..-.+.-.  .+..+|+++|+++.+-+.+.+.++.... .+++ |.+++..+. +++.     +++||.|
T Consensus        79 ~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~k~-~~~~~fvva~ge~l-~~l~-----d~s~DtV  149 (252)
T KOG4300|consen   79 DVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEKKP-LQVERFVVADGENL-PQLA-----DGSYDTV  149 (252)
T ss_pred             ceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhccC-cceEEEEeechhcC-cccc-----cCCeeeE
Confidence            689999999987443321  1589999999999999999998887654 3466 888887554 4553     5899999


Q ss_pred             EEe---CCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764          102 FVD---ADKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus       102 ~id---~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      +..   +.+++..+.+++..++|+|||.+++-+..
T Consensus       150 V~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHv  184 (252)
T KOG4300|consen  150 VCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHV  184 (252)
T ss_pred             EEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence            654   57788889999999999999999985433

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.34  E-value=1.1e-11  Score=93.16  Aligned_cols=99  Identities=11%  Similarity=0.120  Sum_probs=74.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCC--------------CCcEEEEEcchHHH
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV--------------DHKINFIESEALSV   84 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--------------~~~~~~~~~d~~~~   84 (188)
                      .+..+||++|||.|..+++||..   +.+|++||+++.+++.+.+   +.++              ..++++.++|..+.
T Consensus        36 ~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l  109 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFAL  109 (218)
T ss_pred             CCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCC
Confidence            34569999999999999999985   7899999999999997643   1221              24688899998765


Q ss_pred             HHHHhhcccCCCceeEEEEe-----CCccchHHHHHHHHhccCcCeEEEE
Q 029764           85 LDQLLKYSENEGSFDYAFVD-----ADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        85 ~~~~~~~~~~~~~~D~i~id-----~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      .+..      .+.||+|+-.     .++.....+++.+.++|+|||.+++
T Consensus       110 ~~~~------~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l  153 (218)
T PRK13255        110 TAAD------LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL  153 (218)
T ss_pred             Cccc------CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence            3221      3678999832     3445567889999999999986443

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.34  E-value=2.1e-11  Score=90.04  Aligned_cols=101  Identities=25%  Similarity=0.373  Sum_probs=83.9

Q ss_pred             EEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEE
Q 029764           23 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF  102 (188)
Q Consensus        23 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~  102 (188)
                      .+||||||.|...+.+|...| +..++|+|+....+..+.+.+...++. |+.++++|+...+..+.+    .+++|.|+
T Consensus        20 l~lEIG~G~G~~l~~~A~~~P-d~n~iGiE~~~~~v~~a~~~~~~~~l~-Nv~~~~~da~~~l~~~~~----~~~v~~i~   93 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNP-DINFIGIEIRKKRVAKALRKAEKRGLK-NVRFLRGDARELLRRLFP----PGSVDRIY   93 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHST-TSEEEEEES-HHHHHHHHHHHHHHTTS-SEEEEES-CTTHHHHHST----TTSEEEEE
T ss_pred             eEEEecCCCCHHHHHHHHHCC-CCCEEEEecchHHHHHHHHHHHhhccc-ceEEEEccHHHHHhhccc----CCchheEE
Confidence            899999999999999999988 899999999999999999999988875 699999999988887753    47999998


Q ss_pred             EeC---Ccc--------chHHHHHHHHhccCcCeEEEE
Q 029764          103 VDA---DKD--------NYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus       103 id~---~~~--------~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      +..   ++.        -..++++.+.+.|++||.+.+
T Consensus        94 i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~  131 (195)
T PF02390_consen   94 INFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYF  131 (195)
T ss_dssp             EES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEE
T ss_pred             EeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEE
Confidence            863   221        136799999999999998877

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>TIGR03438 probable methyltransferase

Probab=99.34  E-value=3.6e-11  Score=94.65  Aligned_cols=110  Identities=13%  Similarity=0.094  Sum_probs=78.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++.+|||+|||+|..+..+++.++...+++++|++++++..+++++......-++.++++|..+..+-....  .....
T Consensus        62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~--~~~~~  139 (301)
T TIGR03438        62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEP--AAGRR  139 (301)
T ss_pred             CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhccc--ccCCe
Confidence            3557999999999999999999876457999999999999999998765331234777899986643221100  00133


Q ss_pred             eEEEEeC-----CccchHHHHHHHHhccCcCeEEEEe
Q 029764           99 DYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        99 D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      .+++++.     .......+++.+.+.|+|||.+++.
T Consensus       140 ~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig  176 (301)
T TIGR03438       140 LGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG  176 (301)
T ss_pred             EEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence            3445442     2334567899999999999999874

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=99.33  E-value=4.1e-11  Score=90.10  Aligned_cols=103  Identities=23%  Similarity=0.371  Sum_probs=88.7

Q ss_pred             CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029764           22 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  101 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i  101 (188)
                      ..+||||||.|...+.+|...| +..++|||+....+..+.+.+.+.++. |+.++++|+.+++..+.+    .++.|-|
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP-~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~----~~sl~~I  123 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNP-EKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIP----DGSLDKI  123 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCC-CCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCC----CCCeeEE
Confidence            5899999999999999999987 889999999999999999999999976 799999999999888753    3689988


Q ss_pred             EEe---CCcc--c------hHHHHHHHHhccCcCeEEEEe
Q 029764          102 FVD---ADKD--N------YCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus       102 ~id---~~~~--~------~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ++.   .++.  +      ...+++.+.+.|++||.+.+.
T Consensus       124 ~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a  163 (227)
T COG0220         124 YINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA  163 (227)
T ss_pred             EEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence            775   3321  1      357899999999999999873

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.33  E-value=4.9e-11  Score=90.21  Aligned_cols=98  Identities=17%  Similarity=0.194  Sum_probs=74.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++.+|||+|||+|..+..++..   +.+++++|++++++..|++++...+..+++.+..+|..    ..      .++|
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~----~~------~~~f  128 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE----SL------LGRF  128 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch----hc------cCCc
Confidence            45679999999999999999875   45799999999999999999988777667999999832    11      3789


Q ss_pred             eEEEEeCC-----ccchHHHHHHHHhccCcCeEEEE
Q 029764           99 DYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        99 D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      |+|++...     .......++.+.++++.++++.+
T Consensus       129 D~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~  164 (230)
T PRK07580        129 DTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTF  164 (230)
T ss_pred             CEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence            99987532     12334566777666655554443

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.33  E-value=1.8e-11  Score=102.10  Aligned_cols=105  Identities=25%  Similarity=0.311  Sum_probs=79.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .+..+|||+|||+|..+..++..   ..+++++|+++++++.+++..   +..++++++++|+.+....+     ..++|
T Consensus        36 ~~~~~vLDlGcG~G~~~~~la~~---~~~v~giD~s~~~l~~a~~~~---~~~~~i~~~~~d~~~~~~~~-----~~~~f  104 (475)
T PLN02336         36 YEGKSVLELGAGIGRFTGELAKK---AGQVIALDFIESVIKKNESIN---GHYKNVKFMCADVTSPDLNI-----SDGSV  104 (475)
T ss_pred             cCCCEEEEeCCCcCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHh---ccCCceEEEEecccccccCC-----CCCCE
Confidence            34569999999999999999986   459999999999998776532   23357899999885321111     24689


Q ss_pred             eEEEEeCCc-----cchHHHHHHHHhccCcCeEEEEecccc
Q 029764           99 DYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        99 D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      |+|++....     .....+++++.+.|+|||.+++.+..+
T Consensus       105 D~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~  145 (475)
T PLN02336        105 DLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCF  145 (475)
T ss_pred             EEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence            999987421     224678899999999999999977654

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.33  E-value=5.5e-11  Score=89.62  Aligned_cols=103  Identities=20%  Similarity=0.217  Sum_probs=82.6

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   99 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   99 (188)
                      ++.+|||+|||+|..+..+++.   ..+++++|+++.+++.+++++...+.. ++.+..+|+.+.....      .++||
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~------~~~~D  114 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKG------AKSFD  114 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcCC------CCCcc
Confidence            3679999999999999988875   457999999999999999988776642 5888888887653221      36899


Q ss_pred             EEEEeC---CccchHHHHHHHHhccCcCeEEEEecc
Q 029764          100 YAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus       100 ~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      +|++..   ...+...+++.+.+.|++||.+++...
T Consensus       115 ~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~  150 (224)
T TIGR01983       115 VVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTI  150 (224)
T ss_pred             EEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence            999863   345667889999999999999988653

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=99.33  E-value=1.9e-11  Score=93.36  Aligned_cols=107  Identities=19%  Similarity=0.221  Sum_probs=85.5

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCC---CCcEEEEEcchHHHHHHHhhcccC
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV---DHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      ..++++||-||.|.|..+..+++..+ ..++++||+++..++.+++.+.....   .++++++.+|+..++.+.      
T Consensus        74 ~~~p~~VLiiGgG~G~~~~ell~~~~-~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~------  146 (246)
T PF01564_consen   74 HPNPKRVLIIGGGDGGTARELLKHPP-VESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET------  146 (246)
T ss_dssp             SSST-EEEEEESTTSHHHHHHTTSTT--SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS------
T ss_pred             CCCcCceEEEcCCChhhhhhhhhcCC-cceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc------
Confidence            34689999999999999999987643 57999999999999999998775432   378999999999988764      


Q ss_pred             CC-ceeEEEEeCCcc-------chHHHHHHHHhccCcCeEEEEec
Q 029764           95 EG-SFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        95 ~~-~~D~i~id~~~~-------~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      .. +||+|++|...+       ...++++.+.+.|+++|++++..
T Consensus       147 ~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~  191 (246)
T PF01564_consen  147 QEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA  191 (246)
T ss_dssp             SST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence            34 899999996321       13689999999999999999864

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.33  E-value=2.2e-11  Score=91.00  Aligned_cols=100  Identities=15%  Similarity=0.214  Sum_probs=72.8

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcccCC
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENE   95 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~   95 (188)
                      ..++.+|||+|||+|..+..+++...+.++|++||+++ +          .+. ++++++++|+.+.  ++++.+. ...
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~-~~v~~i~~D~~~~~~~~~i~~~-~~~  115 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPI-VGVDFLQGDFRDELVLKALLER-VGD  115 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCC-CCcEEEecCCCChHHHHHHHHH-hCC
Confidence            45677999999999999999999876568999999988 1          122 3488999997653  2222111 124


Q ss_pred             CceeEEEEeCCcc-------c-------hHHHHHHHHhccCcCeEEEEe
Q 029764           96 GSFDYAFVDADKD-------N-------YCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        96 ~~~D~i~id~~~~-------~-------~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ++||+|+++..+.       +       ....++.+.++|+|||.+++.
T Consensus       116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~  164 (209)
T PRK11188        116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK  164 (209)
T ss_pred             CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            6899999875211       1       135678889999999999996

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=99.29  E-value=3e-11  Score=89.22  Aligned_cols=102  Identities=24%  Similarity=0.315  Sum_probs=78.4

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..++..|+|..||.|..++.+|+..+ ..+|+++|++|.+++..+++++.+++.+++..+++|+.++.+        ...
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~~-~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--------~~~  169 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHGK-AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP--------EGK  169 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-----------TT-
T ss_pred             CCcceEEEEccCCccHHHHHHhhhcC-ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC--------ccc
Confidence            56778999999999999999998644 679999999999999999999999999999999999988765        278


Q ss_pred             eeEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764           98 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        98 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      +|-|+++.+... ..+++.+..++++||++.+
T Consensus       170 ~drvim~lp~~~-~~fl~~~~~~~~~~g~ihy  200 (200)
T PF02475_consen  170 FDRVIMNLPESS-LEFLDAALSLLKEGGIIHY  200 (200)
T ss_dssp             EEEEEE--TSSG-GGGHHHHHHHEEEEEEEEE
T ss_pred             cCEEEECChHHH-HHHHHHHHHHhcCCcEEEC
Confidence            999999875443 4788999999999998753

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.29  E-value=5.4e-11  Score=86.05  Aligned_cols=111  Identities=12%  Similarity=-0.016  Sum_probs=82.9

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      ...++.+|||+|||+|..+..+++.   ..+++++|+++.++..+++++..   .++++++++|+.+....       ..
T Consensus        10 ~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~-------~~   76 (169)
T smart00650       10 NLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLP-------KL   76 (169)
T ss_pred             CCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCcc-------cc
Confidence            3455679999999999999999986   46999999999999999998854   24799999999765211       24


Q ss_pred             ceeEEEEeCCccchHHHHHHHHh--ccCcCeEEEEeccccCccccC
Q 029764           97 SFDYAFVDADKDNYCNYHERLMK--LLKVGGIAVYDNTLWGGTVAV  140 (188)
Q Consensus        97 ~~D~i~id~~~~~~~~~~~~~~~--~L~~gG~lv~~~~~~~g~~~~  140 (188)
                      +||.|+.+.+.....+.+..+.+  .+.++|++++..-........
T Consensus        77 ~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e~a~rl~~~  122 (169)
T smart00650       77 QPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKEVARRLAAK  122 (169)
T ss_pred             CCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEHHHhHHhcCC
Confidence            69999998655444566666654  345889998876554443333

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=99.28  E-value=1.3e-10  Score=96.02  Aligned_cols=119  Identities=18%  Similarity=0.221  Sum_probs=94.7

Q ss_pred             HHHHHHHH--HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764            9 GQLMAMLL--RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   86 (188)
Q Consensus         9 ~~~l~~l~--~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   86 (188)
                      +.+...++  ...++.+|||++++.|.-|..+|..+...+.+++.|+++..++..++++++.|+. ++.+...|+.....
T Consensus       100 S~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~~  178 (470)
T PRK11933        100 SMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFGA  178 (470)
T ss_pred             HHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhhh
Confidence            33444444  4567889999999999999999998876689999999999999999999999986 48888888865433


Q ss_pred             HHhhcccCCCceeEEEEeCCccc-------------------------hHHHHHHHHhccCcCeEEEEecccc
Q 029764           87 QLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        87 ~~~~~~~~~~~~D~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      .+      ...||.|++|++.+.                         ..++++.+++.|||||.||.+....
T Consensus       179 ~~------~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~  245 (470)
T PRK11933        179 AL------PETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL  245 (470)
T ss_pred             hc------hhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence            32      367999999964321                         1457788889999999999876664

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.27  E-value=9.2e-11  Score=86.26  Aligned_cols=107  Identities=16%  Similarity=0.207  Sum_probs=75.0

Q ss_pred             HHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHH
Q 029764           11 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQL   88 (188)
Q Consensus        11 ~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~   88 (188)
                      +.+.+....++.+|||+|||+|..+..++....+.++++++|+++.+           .. ++++++++|..+.  +..+
T Consensus        23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l   90 (188)
T TIGR00438        23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKI   90 (188)
T ss_pred             HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHH
Confidence            33444455778899999999999999998877546799999999864           11 3477887776432  1111


Q ss_pred             hhcccCCCceeEEEEeCCc--------c------chHHHHHHHHhccCcCeEEEEe
Q 029764           89 LKYSENEGSFDYAFVDADK--------D------NYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        89 ~~~~~~~~~~D~i~id~~~--------~------~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ... ...++||+|++++..        .      .....++.+.+.|+|||.+++.
T Consensus        91 ~~~-~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~  145 (188)
T TIGR00438        91 RER-VGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK  145 (188)
T ss_pred             HHH-hCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence            100 023579999987421        1      1256788899999999999985

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.27  E-value=1.3e-10  Score=75.86  Aligned_cols=99  Identities=20%  Similarity=0.323  Sum_probs=77.8

Q ss_pred             EEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEE
Q 029764           23 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF  102 (188)
Q Consensus        23 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~  102 (188)
                      +++|+|||.|..+..++. . ...+++++|.+++.+..+++.....+ ..++.++.+|..+....      ..++||+|+
T Consensus         1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~d~i~   71 (107)
T cd02440           1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPPE------ADESFDVII   71 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcChhhhccc------cCCceEEEE
Confidence            489999999999999887 2 36899999999999998886433333 35688999998776431      147899999


Q ss_pred             EeCCc----cchHHHHHHHHhccCcCeEEEEe
Q 029764          103 VDADK----DNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus       103 id~~~----~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ++...    .....+++.+.+.+++||.+++.
T Consensus        72 ~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          72 SDPPLHHLVEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             EccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence            98643    34577889999999999999875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=99.26  E-value=2.4e-10  Score=92.47  Aligned_cols=100  Identities=17%  Similarity=0.239  Sum_probs=84.3

Q ss_pred             CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029764           21 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  100 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~  100 (188)
                      ..+|||++||+|..++.++...+ ..+|+++|+++++++.+++|++.+++. +++++++|+...+..       ...||+
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~-------~~~fD~  128 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHE-------ERKFDV  128 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhh-------cCCCCE
Confidence            35899999999999999998754 468999999999999999999988875 477899999776542       257999


Q ss_pred             EEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764          101 AFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus       101 i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      |++|.. ....++++.+.+.+++||++.+.
T Consensus       129 V~lDP~-Gs~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        129 VDIDPF-GSPAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             EEECCC-CCcHHHHHHHHHHhcCCCEEEEE
Confidence            999964 44567888878889999999986

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.26  E-value=1.2e-10  Score=84.56  Aligned_cols=109  Identities=23%  Similarity=0.288  Sum_probs=73.0

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcC--CCCcEEEEEcchHHHH-HHHhhccc
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--VDHKINFIESEALSVL-DQLLKYSE   93 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~-~~~~~~~~   93 (188)
                      ...++++|||+|||+|..++.++.... ..+|+..|.++ .++..+.|++.++  ...++.+..-|..+.. ....    
T Consensus        42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~-~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~----  115 (173)
T PF10294_consen   42 ELFRGKRVLELGAGTGLPGIAAAKLFG-AARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL----  115 (173)
T ss_dssp             GGTTTSEEEETT-TTSHHHHHHHHT-T--SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH----
T ss_pred             hhcCCceEEEECCccchhHHHHHhccC-CceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc----
Confidence            356778999999999999999998753 67999999988 9999999999876  4566777776543322 2222    


Q ss_pred             CCCceeEEEEe---CCccchHHHHHHHHhccCcCeEEEEec
Q 029764           94 NEGSFDYAFVD---ADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        94 ~~~~~D~i~id---~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      +..+||+|+..   ........+++.+..+|+++|.+++..
T Consensus       116 ~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~  156 (173)
T PF10294_consen  116 EPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAY  156 (173)
T ss_dssp             S-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred             ccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence            24689999865   245677889999999999999866653

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=99.24  E-value=2e-10  Score=80.88  Aligned_cols=120  Identities=18%  Similarity=0.112  Sum_probs=96.0

Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch
Q 029764            2 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   81 (188)
Q Consensus         2 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   81 (188)
                      .++++-.++.|...+.-..+.-|||+|.|+|..+..++++..+...+++||.++++....++.+      +.+.++.||+
T Consensus        30 ~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------p~~~ii~gda  103 (194)
T COG3963          30 LPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------PGVNIINGDA  103 (194)
T ss_pred             cCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC------CCccccccch
Confidence            3577788888888888888889999999999999998887766789999999999999888765      2467999999


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCC-----ccchHHHHHHHHhccCcCeEEEE
Q 029764           82 LSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        82 ~~~~~~~~~~~~~~~~~D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      .+.-..+.+.  .++.||.|++..+     .....++++.+...|..||.++-
T Consensus       104 ~~l~~~l~e~--~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvq  154 (194)
T COG3963         104 FDLRTTLGEH--KGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQ  154 (194)
T ss_pred             hhHHHHHhhc--CCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence            8764344332  3567999998743     33446788999999999998875

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.24  E-value=4.6e-10  Score=90.50  Aligned_cols=120  Identities=14%  Similarity=0.144  Sum_probs=84.6

Q ss_pred             CcHHH-HHHHHHHHHHcC--CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcc
Q 029764            4 TAPDA-GQLMAMLLRLVN--AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   80 (188)
Q Consensus         4 ~~~~~-~~~l~~l~~~~~--~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d   80 (188)
                      +.+.. ..++.++.....  +.++||++||+|..++.+++..   .+|+++|.++++++.+++|+..+++. +++++.+|
T Consensus       187 ~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d  262 (362)
T PRK05031        187 PNAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGID-NVQIIRMS  262 (362)
T ss_pred             cCHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECC
Confidence            34433 344444444332  3579999999999999999864   49999999999999999999988875 79999999


Q ss_pred             hHHHHHHHhhccc---------CCCceeEEEEeCCccc-hHHHHHHHHhccCcCeEEEEe
Q 029764           81 ALSVLDQLLKYSE---------NEGSFDYAFVDADKDN-YCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        81 ~~~~~~~~~~~~~---------~~~~~D~i~id~~~~~-~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      +.+.++.+.....         ...+||+||+|.+... ....++.+.+   ++++++++
T Consensus       263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~---~~~ivyvS  319 (362)
T PRK05031        263 AEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQA---YERILYIS  319 (362)
T ss_pred             HHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHc---cCCEEEEE
Confidence            9887765432100         0125899999976443 3444455543   57766664

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.23  E-value=5.2e-11  Score=92.02  Aligned_cols=105  Identities=24%  Similarity=0.321  Sum_probs=74.8

Q ss_pred             CCCEEEEEcccchHH----HHHHHhhCCC----CCEEEEEeCCchhHHHHHHHHH------hcC----------------
Q 029764           20 NAKKTIEIGVFTGYS----LLLTALTIPE----DGQITAIDVNRETYEIGLPIIK------KAG----------------   69 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~----~~~la~~~~~----~~~v~~iD~~~~~~~~a~~~~~------~~~----------------   69 (188)
                      ++.+|+++|||+|..    ++.+++..+.    +.+|+++|+++++++.|++.+-      ..+                
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            456999999999964    4455554432    4689999999999999997531      000                


Q ss_pred             ----CCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeC-----CccchHHHHHHHHhccCcCeEEEEec
Q 029764           70 ----VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        70 ----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                          +.++++|.+.|..+...       ..++||+|++..     ........++.+.+.|+|||++++..
T Consensus       179 v~~~ir~~V~F~~~dl~~~~~-------~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~  242 (264)
T smart00138      179 VKPELKERVRFAKHNLLAESP-------PLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH  242 (264)
T ss_pred             EChHHhCcCEEeeccCCCCCC-------ccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence                12357888888765321       147899999853     12344578999999999999999853

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=99.23  E-value=9.3e-11  Score=86.08  Aligned_cols=131  Identities=15%  Similarity=0.089  Sum_probs=95.2

Q ss_pred             CcHHHHHHHHHHHHHcCC-CE-EEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch
Q 029764            4 TAPDAGQLMAMLLRLVNA-KK-TIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   81 (188)
Q Consensus         4 ~~~~~~~~l~~l~~~~~~-~~-vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   81 (188)
                      ..++..-+++.|....+. .+ |||||||+|.-+.++|..+| ..+....|.+++.....++++...++++-...+.-|+
T Consensus         7 aeRNk~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv   85 (204)
T PF06080_consen    7 AERNKDPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDV   85 (204)
T ss_pred             hhhCHhHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeec
Confidence            345566677777765443 34 99999999999999999998 8899999999999899999988888765444455554


Q ss_pred             HHHHHHHhhc-ccCCCceeEEEEe-----CCccchHHHHHHHHhccCcCeEEEEeccccC
Q 029764           82 LSVLDQLLKY-SENEGSFDYAFVD-----ADKDNYCNYHERLMKLLKVGGIAVYDNTLWG  135 (188)
Q Consensus        82 ~~~~~~~~~~-~~~~~~~D~i~id-----~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  135 (188)
                      .+....+... ....++||+||+.     ........+|+.+.++|++||.+++-..+..
T Consensus        86 ~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~  145 (204)
T PF06080_consen   86 SAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNR  145 (204)
T ss_pred             CCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCccc
Confidence            3321111000 0013589999975     2345667889999999999999999887753

The function of this family is unknown.

>PHA03411 putative methyltransferase; Provisional

Probab=99.22  E-value=5.2e-10  Score=85.82  Aligned_cols=97  Identities=13%  Similarity=0.164  Sum_probs=73.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      ....+|||+|||+|..+..++...+ ..+|+++|+++.+++.+++++      ++++++++|..+...        ..+|
T Consensus        63 ~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~--------~~kF  127 (279)
T PHA03411         63 HCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFES--------NEKF  127 (279)
T ss_pred             ccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcc--------cCCC
Confidence            3456999999999999998887654 579999999999999998863      258899999876531        3689


Q ss_pred             eEEEEeCCccc-----------------------hHHHHHHHHhccCcCeEEEEe
Q 029764           99 DYAFVDADKDN-----------------------YCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        99 D~i~id~~~~~-----------------------~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      |+|+++.+...                       ...++.....+|+|+|.+.+.
T Consensus       128 DlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~  182 (279)
T PHA03411        128 DVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA  182 (279)
T ss_pred             cEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence            99999742111                       124445556789999977664

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.22  E-value=5.8e-11  Score=84.76  Aligned_cols=119  Identities=21%  Similarity=0.360  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHc-------CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcc
Q 029764            8 AGQLMAMLLRLV-------NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   80 (188)
Q Consensus         8 ~~~~l~~l~~~~-------~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d   80 (188)
                      ..+++.++....       .+.+|||+|||.|.....|++.-= .+.++++|+++.+++.|+...++.+.++.++|.+.|
T Consensus        48 e~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf-~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~D  126 (227)
T KOG1271|consen   48 EERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGF-QSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLD  126 (227)
T ss_pred             HHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcC-CCCccccccCHHHHHHHHHHHHhcCCCcceeEEEee
Confidence            445666665432       234899999999999999987532 356999999999999999999999999889999998


Q ss_pred             hHHHHHHHhhcccCCCceeEEE---------EeC--CccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           81 ALSVLDQLLKYSENEGSFDYAF---------VDA--DKDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~D~i~---------id~--~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      ..+-  ++     ..++||+|+         +.+  .......+++.+.++|+|||++++....|
T Consensus       127 I~~~--~~-----~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~  184 (227)
T KOG1271|consen  127 ITDP--DF-----LSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF  184 (227)
T ss_pred             ccCC--cc-----cccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence            8653  21     135677664         221  12223457788889999999999987776

>PLN02672 methionine S-methyltransferase

Probab=99.22  E-value=2.7e-10  Score=101.58  Aligned_cols=120  Identities=15%  Similarity=0.131  Sum_probs=89.5

Q ss_pred             cHHHHHHHHHHHHHc----CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCC----------
Q 029764            5 APDAGQLMAMLLRLV----NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV----------   70 (188)
Q Consensus         5 ~~~~~~~l~~l~~~~----~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~----------   70 (188)
                      .+++..++..+....    ++.+|||+|||+|..++.++...+ ..+++++|+++++++.|++|...+++          
T Consensus        99 RpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~  177 (1082)
T PLN02672         99 EDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDG  177 (1082)
T ss_pred             chhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCccccccccccc
Confidence            567777777743321    245899999999999999999876 67999999999999999999987643          


Q ss_pred             -----CCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCC----------------c---------------------c
Q 029764           71 -----DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD----------------K---------------------D  108 (188)
Q Consensus        71 -----~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~----------------~---------------------~  108 (188)
                           .++++++++|..+.....      ..+||+|+.+.+                +                     .
T Consensus       178 ~~~~l~~rV~f~~sDl~~~~~~~------~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~  251 (1082)
T PLN02672        178 EGKTLLDRVEFYESDLLGYCRDN------NIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQ  251 (1082)
T ss_pred             ccccccccEEEEECchhhhcccc------CCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCC
Confidence                 247999999987654221      236999986521                0                     0


Q ss_pred             c----hHHHHHHHHhccCcCeEEEEec
Q 029764          109 N----YCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus       109 ~----~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      +    +..++.++.++|+|||.+++.-
T Consensus       252 dGL~~yr~i~~~a~~~L~pgG~l~lEi  278 (1082)
T PLN02672        252 FGLGLIARAVEEGISVIKPMGIMIFNM  278 (1082)
T ss_pred             cHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence            0    1345566678999999999853

>PRK06202 hypothetical protein; Provisional

Probab=99.22  E-value=5.5e-11  Score=90.24  Aligned_cols=105  Identities=12%  Similarity=0.077  Sum_probs=72.9

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCC---CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIP---EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   93 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   93 (188)
                      ...++.+|||+|||+|..+..++...+   ++.+++++|+++++++.|+++....    ++.+...++... +.      
T Consensus        57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l-~~------  125 (232)
T PRK06202         57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDEL-VA------  125 (232)
T ss_pred             CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccc-cc------
Confidence            335667999999999999998886432   2469999999999999998875433    345555544322 11      


Q ss_pred             CCCceeEEEEeCCc---cc--hHHHHHHHHhccCcCeEEEEecccc
Q 029764           94 NEGSFDYAFVDADK---DN--YCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        94 ~~~~~D~i~id~~~---~~--~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      ..++||+|++....   .+  ...+++.+.++++  |.+++.+...
T Consensus       126 ~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~  169 (232)
T PRK06202        126 EGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIR  169 (232)
T ss_pred             cCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEecccc
Confidence            14789999987421   12  3468888888887  5666666554

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.22  E-value=1.9e-10  Score=88.86  Aligned_cols=111  Identities=20%  Similarity=0.202  Sum_probs=80.0

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      -..+++|||||||.|+.+..++..-  ...|+++|+++..+...+-.-.-.|....+..+ ....+.++.       .+.
T Consensus       113 ~L~gk~VLDIGC~nGY~~frM~~~G--A~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~l-plgvE~Lp~-------~~~  182 (315)
T PF08003_consen  113 DLKGKRVLDIGCNNGYYSFRMLGRG--AKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFEL-PLGVEDLPN-------LGA  182 (315)
T ss_pred             CcCCCEEEEecCCCcHHHHHHhhcC--CCEEEEECCChHHHHHHHHHHHHhCCCccEEEc-Ccchhhccc-------cCC
Confidence            4577899999999999999998863  357999999988766544332223333333333 223333333       378


Q ss_pred             eeEEEEeC---CccchHHHHHHHHhccCcCeEEEEeccccCccc
Q 029764           98 FDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTV  138 (188)
Q Consensus        98 ~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~  138 (188)
                      ||+||+-+   +..++...+.++...|++||.+|+.....+|..
T Consensus       183 FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~  226 (315)
T PF08003_consen  183 FDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDE  226 (315)
T ss_pred             cCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCC
Confidence            99999875   556778899999999999999999888776643

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=99.21  E-value=5e-10  Score=90.25  Aligned_cols=101  Identities=15%  Similarity=0.117  Sum_probs=86.8

Q ss_pred             CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029764           22 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  101 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i  101 (188)
                      .+|||..||+|..++.++...+...+|+++|+++++++.+++|++.++.. +++++++|+...+...      ...||+|
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~------~~~fDvI  118 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYR------NRKFHVI  118 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHh------CCCCCEE
Confidence            48999999999999999987542468999999999999999999888765 5889999998887654      3679999


Q ss_pred             EEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764          102 FVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus       102 ~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ++|. .....++++.+.+.+++||++.+.
T Consensus       119 dlDP-fGs~~~fld~al~~~~~~glL~vT  146 (374)
T TIGR00308       119 DIDP-FGTPAPFVDSAIQASAERGLLLVT  146 (374)
T ss_pred             EeCC-CCCcHHHHHHHHHhcccCCEEEEE
Confidence            9997 445568999999999999999986

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=99.21  E-value=1.3e-10  Score=87.81  Aligned_cols=115  Identities=16%  Similarity=0.204  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764            7 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   86 (188)
Q Consensus         7 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   86 (188)
                      +.+.++ ++++..++.+|+|-|+|+|+.+.++++...+.+++++.|......+.|.+.++..++.+++++.+.|....  
T Consensus        93 Dia~I~-~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~--  169 (314)
T KOG2915|consen   93 DIAMIL-SMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGS--  169 (314)
T ss_pred             cHHHHH-HHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccC--
Confidence            344444 45688999999999999999999999999889999999999999999999999999999999999987652  


Q ss_pred             HHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764           87 QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        87 ~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      .+..   ....+|.||+|...  +...+..+++.||.+|.-++
T Consensus       170 GF~~---ks~~aDaVFLDlPa--Pw~AiPha~~~lk~~g~r~c  207 (314)
T KOG2915|consen  170 GFLI---KSLKADAVFLDLPA--PWEAIPHAAKILKDEGGRLC  207 (314)
T ss_pred             Cccc---cccccceEEEcCCC--hhhhhhhhHHHhhhcCceEE
Confidence            1111   14789999999633  34555666677887774433

>PRK05785 hypothetical protein; Provisional

Probab=99.21  E-value=1.4e-10  Score=87.61  Aligned_cols=89  Identities=12%  Similarity=0.104  Sum_probs=69.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++.+|||+|||+|..+..+++..  +.+|+++|+++++++.|++..         .++++|+.+. + +     ..++|
T Consensus        50 ~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~---------~~~~~d~~~l-p-~-----~d~sf  111 (226)
T PRK05785         50 GRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD---------DKVVGSFEAL-P-F-----RDKSF  111 (226)
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc---------ceEEechhhC-C-C-----CCCCE
Confidence            356799999999999999998865  469999999999999988641         3467777543 2 2     25799


Q ss_pred             eEEEEeC---CccchHHHHHHHHhccCcCe
Q 029764           99 DYAFVDA---DKDNYCNYHERLMKLLKVGG  125 (188)
Q Consensus        99 D~i~id~---~~~~~~~~~~~~~~~L~~gG  125 (188)
                      |+|++..   +..+....++++.+.|||..
T Consensus       112 D~v~~~~~l~~~~d~~~~l~e~~RvLkp~~  141 (226)
T PRK05785        112 DVVMSSFALHASDNIEKVIAEFTRVSRKQV  141 (226)
T ss_pred             EEEEecChhhccCCHHHHHHHHHHHhcCce
Confidence            9999764   34567889999999999953

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=99.20  E-value=1.2e-09  Score=87.73  Aligned_cols=124  Identities=22%  Similarity=0.280  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029764            6 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   84 (188)
Q Consensus         6 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   84 (188)
                      ...+++...++...++.+|||..++.|.=|..+|..+.. +..|+++|.++..++..+++++++|..+ +...+.|+...
T Consensus       142 d~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~~~~  220 (355)
T COG0144         142 DEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDARRL  220 (355)
T ss_pred             CHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEecccccc
Confidence            345566677778888899999999999999999998874 3456999999999999999999999876 77778776544


Q ss_pred             HHHHhhcccCCCceeEEEEeCCccc-------------------------hHHHHHHHHhccCcCeEEEEecccc
Q 029764           85 LDQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        85 ~~~~~~~~~~~~~~D~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      .....    ....||.|++|++.+.                         ..++++.++++|||||.||.+.+..
T Consensus       221 ~~~~~----~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~  291 (355)
T COG0144         221 AELLP----GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL  291 (355)
T ss_pred             ccccc----ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence            33321    1235999999953211                         2357788889999999999987765

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.19  E-value=5.6e-10  Score=91.42  Aligned_cols=120  Identities=16%  Similarity=0.166  Sum_probs=92.0

Q ss_pred             CCCcHHHHHHHHHHH----HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEE
Q 029764            2 MGTAPDAGQLMAMLL----RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI   77 (188)
Q Consensus         2 ~~~~~~~~~~l~~l~----~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~   77 (188)
                      .++++...+-|...+    ...+..+++|+.||.|..++.+|..   ..+|+++|+++++++.|++|++.+++.+ ++|.
T Consensus       271 ~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~  346 (432)
T COG2265         271 FQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDN-VEFI  346 (432)
T ss_pred             eecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEE
Confidence            344555555554433    3445679999999999999999965   5699999999999999999999999876 9999


Q ss_pred             EcchHHHHHHHhhcccCCCceeEEEEeCCccchH-HHHHHHHhccCcCeEEEEe
Q 029764           78 ESEALSVLDQLLKYSENEGSFDYAFVDADKDNYC-NYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        78 ~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~-~~~~~~~~~L~~gG~lv~~  130 (188)
                      .+++.++.+.+..    ...+|.|++|.+-.... .+++.+ ..++|..++.++
T Consensus       347 ~~~ae~~~~~~~~----~~~~d~VvvDPPR~G~~~~~lk~l-~~~~p~~IvYVS  395 (432)
T COG2265         347 AGDAEEFTPAWWE----GYKPDVVVVDPPRAGADREVLKQL-AKLKPKRIVYVS  395 (432)
T ss_pred             eCCHHHHhhhccc----cCCCCEEEECCCCCCCCHHHHHHH-HhcCCCcEEEEe
Confidence            9999998877531    35889999998765555 555655 555666665554

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.19  E-value=1.3e-09  Score=87.54  Aligned_cols=120  Identities=11%  Similarity=0.089  Sum_probs=84.3

Q ss_pred             CcHHHH-HHHHHHHHHcC--CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcc
Q 029764            4 TAPDAG-QLMAMLLRLVN--AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   80 (188)
Q Consensus         4 ~~~~~~-~~l~~l~~~~~--~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d   80 (188)
                      ..+... .++..+....+  +.++||+|||+|..++.+++..   .+|+++|.++++++.|++|+..+++. +++++.+|
T Consensus       178 ~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d  253 (353)
T TIGR02143       178 PNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMS  253 (353)
T ss_pred             CCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcC
Confidence            334433 44445444332  3479999999999999999874   39999999999999999999998875 59999999


Q ss_pred             hHHHHHHHhh-------c--ccCCCceeEEEEeCCccc-hHHHHHHHHhccCcCeEEEEe
Q 029764           81 ALSVLDQLLK-------Y--SENEGSFDYAFVDADKDN-YCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        81 ~~~~~~~~~~-------~--~~~~~~~D~i~id~~~~~-~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      +.+.++....       .  +.....||+||+|.+... ....++.+.+   ++++++++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~---~~~ivYvs  310 (353)
T TIGR02143       254 AEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQA---YERILYIS  310 (353)
T ss_pred             HHHHHHHHhhccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHc---CCcEEEEE
Confidence            9887764211       0  000123899999976443 3455555543   67777765

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.17  E-value=1.8e-10  Score=86.40  Aligned_cols=150  Identities=15%  Similarity=0.210  Sum_probs=94.6

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHh-cC----------CCCc
Q 029764            5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK-AG----------VDHK   73 (188)
Q Consensus         5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-~~----------~~~~   73 (188)
                      .|...+++.. ....++.+||..|||.|....+||..   +.+|+++|+++.+++.+.+.... ..          -..+
T Consensus        23 ~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~   98 (218)
T PF05724_consen   23 NPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGR   98 (218)
T ss_dssp             THHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSS
T ss_pred             CHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCc
Confidence            3445555555 34556669999999999999999986   77999999999999988432111 10          1246


Q ss_pred             EEEEEcchHHHHHHHhhcccCCCceeEEEEe-----CCccchHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCC
Q 029764           74 INFIESEALSVLDQLLKYSENEGSFDYAFVD-----ADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDH  148 (188)
Q Consensus        74 ~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id-----~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~  148 (188)
                      +++.++|.++.-+..      .++||+|+=.     .++.....+.+.+.++|+|||.+++-...++....    ..++ 
T Consensus        99 i~~~~gDfF~l~~~~------~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~----~GPP-  167 (218)
T PF05724_consen   99 ITIYCGDFFELPPED------VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEM----EGPP-  167 (218)
T ss_dssp             EEEEES-TTTGGGSC------HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCS----SSSS-
T ss_pred             eEEEEcccccCChhh------cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCC----CCcC-
Confidence            889999998753321      2589999733     35667788999999999999994443333322111    1111 


Q ss_pred             cccchHHHHHHHHHHhhcCCCeEEEEe
Q 029764          149 FRGSSRQAILDLNRSLADDPRVQLSHV  175 (188)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~l  175 (188)
                          ......++.+.+.  +.|+...+
T Consensus       168 ----f~v~~~ev~~l~~--~~f~i~~l  188 (218)
T PF05724_consen  168 ----FSVTEEEVRELFG--PGFEIEEL  188 (218)
T ss_dssp             --------HHHHHHHHT--TTEEEEEE
T ss_pred             ----CCCCHHHHHHHhc--CCcEEEEE
Confidence                2222566666665  56665544

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=1.3e-10  Score=84.74  Aligned_cols=119  Identities=16%  Similarity=0.207  Sum_probs=89.5

Q ss_pred             CCCcHHHHHHHHHHHH-HcCCCEEEEEcccchHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHhcCC---------
Q 029764            2 MGTAPDAGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGV---------   70 (188)
Q Consensus         2 ~~~~~~~~~~l~~l~~-~~~~~~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~---------   70 (188)
                      ++...-.+..|..|-. ..++.+.||+|+|+|+.+..++..... +...++||.-++.++.+++++.+.-.         
T Consensus        63 iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~  142 (237)
T KOG1661|consen   63 ISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLK  142 (237)
T ss_pred             EcchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhc
Confidence            3445566777777653 667779999999999999999966643 34459999999999999999876531         


Q ss_pred             CCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           71 DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        71 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ...+.+..+|.....++       ..+||.|++.+..+   +.-+.+...|++||.|++.
T Consensus       143 ~~~l~ivvGDgr~g~~e-------~a~YDaIhvGAaa~---~~pq~l~dqL~~gGrllip  192 (237)
T KOG1661|consen  143 RGELSIVVGDGRKGYAE-------QAPYDAIHVGAAAS---ELPQELLDQLKPGGRLLIP  192 (237)
T ss_pred             cCceEEEeCCccccCCc-------cCCcceEEEccCcc---ccHHHHHHhhccCCeEEEe
Confidence            14577889998776543       58999999986443   3345567788999988874

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=99.17  E-value=1.5e-09  Score=84.96  Aligned_cols=90  Identities=17%  Similarity=0.136  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029764            6 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   85 (188)
Q Consensus         6 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   85 (188)
                      +.....+...+...++.+|||||||+|..+..++..   ..+++++|+++++++.+++++...+..++++++++|+.+. 
T Consensus        22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~-   97 (294)
T PTZ00338         22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKT-   97 (294)
T ss_pred             HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhh-
Confidence            334444444445667789999999999999999885   4589999999999999999998776556899999999764 


Q ss_pred             HHHhhcccCCCceeEEEEeCCc
Q 029764           86 DQLLKYSENEGSFDYAFVDADK  107 (188)
Q Consensus        86 ~~~~~~~~~~~~~D~i~id~~~  107 (188)
                       .       ...||.|+.+.+.
T Consensus        98 -~-------~~~~d~VvaNlPY  111 (294)
T PTZ00338         98 -E-------FPYFDVCVANVPY  111 (294)
T ss_pred             -c-------ccccCEEEecCCc
Confidence             1       2578999887644

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.17  E-value=9.4e-11  Score=86.54  Aligned_cols=138  Identities=12%  Similarity=0.157  Sum_probs=87.4

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   99 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   99 (188)
                      +..++||+|+|.|+.|..++...  -.+|..+|+.+.+++.|++.+.... ....++++....++.|.       ..+||
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~-------~~~YD  124 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTPE-------EGKYD  124 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG-----------TT-EE
T ss_pred             CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccCC-------CCcEe
Confidence            34589999999999999876543  3599999999999999998765421 23356777777777654       47999


Q ss_pred             EEEEeC-----CccchHHHHHHHHhccCcCeEEEEeccc-cCcc-ccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeEE
Q 029764          100 YAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTL-WGGT-VAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQL  172 (188)
Q Consensus       100 ~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~-~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (188)
                      +|++--     .-.+..+++.+|...|+|+|+||+.+-. ..+. +.+++++.       +++..+.|.+.+.. .++..
T Consensus       125 lIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsS-------vTRs~~~~~~lF~~-AGl~~  196 (218)
T PF05891_consen  125 LIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSS-------VTRSDEHFRELFKQ-AGLRL  196 (218)
T ss_dssp             EEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTE-------EEEEHHHHHHHHHH-CT-EE
T ss_pred             EEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCe-------eecCHHHHHHHHHH-cCCEE
Confidence            999873     2345678999999999999999995544 3443 44444331       22334555444433 46555


Q ss_pred             EEe
Q 029764          173 SHV  175 (188)
Q Consensus       173 ~~l  175 (188)
                      ..-
T Consensus       197 v~~  199 (218)
T PF05891_consen  197 VKE  199 (218)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            443

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=99.17  E-value=1e-10  Score=83.25  Aligned_cols=77  Identities=23%  Similarity=0.310  Sum_probs=59.3

Q ss_pred             CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029764           22 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  101 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i  101 (188)
                      ..|+|..||.|..++.+|+.+.   +|++||++|..++.++.|++-.|..++++++++|..+.++.+..    ...+|+|
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~~---~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~----~~~~D~v   73 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTFD---RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKS----NKIFDVV   73 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB----------SEE
T ss_pred             CEEEEeccCcCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccc----cccccEE
Confidence            3699999999999999999854   99999999999999999999999999999999999987665421    1128999


Q ss_pred             EEeC
Q 029764          102 FVDA  105 (188)
Q Consensus       102 ~id~  105 (188)
                      |++.
T Consensus        74 FlSP   77 (163)
T PF09445_consen   74 FLSP   77 (163)
T ss_dssp             EE--
T ss_pred             EECC
Confidence            9984

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PHA03412 putative methyltransferase; Provisional

Probab=99.15  E-value=6.3e-10  Score=83.60  Aligned_cols=112  Identities=14%  Similarity=0.229  Sum_probs=79.5

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCC--CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch
Q 029764            4 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP--EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   81 (188)
Q Consensus         4 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   81 (188)
                      |++..++.+..  ....+.+|||+|||+|..++.+++..+  +..+|+++|+++.+++.|+++..      ++.++.+|.
T Consensus        35 TP~~iAr~~~i--~~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~  106 (241)
T PHA03412         35 TPIGLARDFTI--DACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADA  106 (241)
T ss_pred             CCHHHHHHHHH--hccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcch
Confidence            45556565532  233467999999999999999988643  25699999999999999998752      478889988


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCc---------------cchHHHHHHHHhccCcCeEEEEec
Q 029764           82 LSVLDQLLKYSENEGSFDYAFVDADK---------------DNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        82 ~~~~~~~~~~~~~~~~~D~i~id~~~---------------~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      ....  +      .++||+|+.+.+.               .....+++.+.+++++|+.|+-..
T Consensus       107 ~~~~--~------~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~  163 (241)
T PHA03412        107 LTTE--F------DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQM  163 (241)
T ss_pred             hccc--c------cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCcc
Confidence            6431  1      3689999987421               113457778888888887744333

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=99.14  E-value=6.5e-10  Score=87.87  Aligned_cols=110  Identities=21%  Similarity=0.178  Sum_probs=93.8

Q ss_pred             HHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           15 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        15 l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      .-....+.+|+|..+|.|..++.+|..-.  .+|+++|+||.+++..++|+..+++.+.+..+++|+.+..+.+      
T Consensus       183 a~~v~~GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~------  254 (341)
T COG2520         183 AELVKEGETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL------  254 (341)
T ss_pred             HhhhcCCCEEEEccCCcccchhhhhhcCC--ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc------
Confidence            33455688999999999999999999743  3499999999999999999999999988999999999887653      


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                       +.+|-|++.... ....++..+.+.+++||.+.+.....
T Consensus       255 -~~aDrIim~~p~-~a~~fl~~A~~~~k~~g~iHyy~~~~  292 (341)
T COG2520         255 -GVADRIIMGLPK-SAHEFLPLALELLKDGGIIHYYEFVP  292 (341)
T ss_pred             -ccCCEEEeCCCC-cchhhHHHHHHHhhcCcEEEEEeccc
Confidence             789999997644 34678888999999999999987664

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=99.14  E-value=4e-10  Score=83.91  Aligned_cols=110  Identities=20%  Similarity=0.318  Sum_probs=79.1

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcC----------------------------
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG----------------------------   69 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~----------------------------   69 (188)
                      ...++.+|||||.+|..++.+|+.+. ...+.|+|+++..+..|+++++..-                            
T Consensus        56 ~f~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~  134 (288)
T KOG2899|consen   56 WFEPKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD  134 (288)
T ss_pred             ccCcceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence            44677899999999999999999997 6789999999999999999876421                            


Q ss_pred             ------CCCcEEEEE----cchHHHHHHHhhcccCCCceeEEEEe---------CCccchHHHHHHHHhccCcCeEEEEe
Q 029764           70 ------VDHKINFIE----SEALSVLDQLLKYSENEGSFDYAFVD---------ADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        70 ------~~~~~~~~~----~d~~~~~~~~~~~~~~~~~~D~i~id---------~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                            +++++.+..    .+..+++ ..     ....||+|++-         .+-+....+|..++++|.|||++|+.
T Consensus       135 ~a~t~~~p~n~~f~~~n~vle~~dfl-~~-----~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE  208 (288)
T KOG2899|consen  135 RAFTTDFPDNVWFQKENYVLESDDFL-DM-----IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE  208 (288)
T ss_pred             ccccccCCcchhcccccEEEecchhh-hh-----ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence                  001111111    1122233 11     25789999753         12345678999999999999999997


Q ss_pred             cccc
Q 029764          131 NTLW  134 (188)
Q Consensus       131 ~~~~  134 (188)
                      ---|
T Consensus       209 PQpW  212 (288)
T KOG2899|consen  209 PQPW  212 (288)
T ss_pred             CCch
Confidence            5555

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=1e-09  Score=79.01  Aligned_cols=105  Identities=16%  Similarity=0.263  Sum_probs=78.7

Q ss_pred             CCcHHHHHHHHHHHHH---cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc
Q 029764            3 GTAPDAGQLMAMLLRL---VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   79 (188)
Q Consensus         3 ~~~~~~~~~l~~l~~~---~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~   79 (188)
                      .|++..+..+-+.+..   ..+++|+|+|||+|..++..+..-  ..+|+++|+++++++.+++|..+  +..++.+..+
T Consensus        25 ~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lG--a~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~  100 (198)
T COG2263          25 RTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLG--ASRVLAVDIDPEALEIARANAEE--LLGDVEFVVA  100 (198)
T ss_pred             CCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcC--CcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEc
Confidence            4566666666666643   355689999999999998877653  36999999999999999999988  3467999999


Q ss_pred             chHHHHHHHhhcccCCCceeEEEEeCCc-----cchHHHHHHHHhcc
Q 029764           80 EALSVLDQLLKYSENEGSFDYAFVDADK-----DNYCNYHERLMKLL  121 (188)
Q Consensus        80 d~~~~~~~~~~~~~~~~~~D~i~id~~~-----~~~~~~~~~~~~~L  121 (188)
                      |..++          .+.+|.++++.+.     ..-.++++.+.+.-
T Consensus       101 dv~~~----------~~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s  137 (198)
T COG2263         101 DVSDF----------RGKFDTVIMNPPFGSQRRHADRPFLLKALEIS  137 (198)
T ss_pred             chhhc----------CCccceEEECCCCccccccCCHHHHHHHHHhh
Confidence            99765          5789999988532     12245666555543

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.14  E-value=1.8e-09  Score=85.18  Aligned_cols=96  Identities=16%  Similarity=0.088  Sum_probs=69.1

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCC----CCcEEEEEcchHHHHHHHhhcccCC
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV----DHKINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      ++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.+++++...+.    ..++++...|..+.          .
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----------~  210 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----------S  210 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----------C
Confidence            5679999999999999999974   57999999999999999999876421    13578888886432          3


Q ss_pred             CceeEEEEeCC----cc-chHHHHHHHHhccCcCeEEEE
Q 029764           96 GSFDYAFVDAD----KD-NYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        96 ~~~D~i~id~~----~~-~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      ++||+|++...    +. ....++..+.+ +.+||+++.
T Consensus       211 ~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs  248 (315)
T PLN02585        211 GKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIIS  248 (315)
T ss_pred             CCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEE
Confidence            78999986422    11 12334555543 466776664

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.13  E-value=9.6e-10  Score=80.21  Aligned_cols=121  Identities=20%  Similarity=0.210  Sum_probs=87.8

Q ss_pred             CCcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCC--------EEEEEeCCchhHHHHHHHHHhcCCCCcE
Q 029764            3 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDG--------QITAIDVNRETYEIGLPIIKKAGVDHKI   74 (188)
Q Consensus         3 ~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~--------~v~~iD~~~~~~~~a~~~~~~~~~~~~~   74 (188)
                      +..+..+..|-.++...++..++|..||+|...+..+.......        ++++.|+++++++.+++|++..++...+
T Consensus        11 ~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i   90 (179)
T PF01170_consen   11 PLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYI   90 (179)
T ss_dssp             SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGE
T ss_pred             CCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCce
Confidence            45678888888888888888999999999999988766554222        3999999999999999999999998889


Q ss_pred             EEEEcchHHHHHHHhhcccCCCceeEEEEeCCc-----------cchHHHHHHHHhccCcCeEEEEe
Q 029764           75 NFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----------DNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        75 ~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~-----------~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      .+.+.|+.+.-  +     ..+++|.|+.|.+.           ..+..+++.+.+++++..++++.
T Consensus        91 ~~~~~D~~~l~--~-----~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~  150 (179)
T PF01170_consen   91 DFIQWDARELP--L-----PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT  150 (179)
T ss_dssp             EEEE--GGGGG--G-----TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred             EEEecchhhcc--c-----ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence            99999987653  1     14789999999532           22456678888899996666654

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=99.12  E-value=1e-08  Score=80.07  Aligned_cols=149  Identities=23%  Similarity=0.296  Sum_probs=109.2

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764            7 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   86 (188)
Q Consensus         7 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   86 (188)
                      ....+...++...++.+|||++++.|.=+..++..+...+++++.|++++.+...++++++.|..+ +.....|+....+
T Consensus        72 ~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~D~~~~~~  150 (283)
T PF01189_consen   72 ESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VIVINADARKLDP  150 (283)
T ss_dssp             HHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EEEEESHHHHHHH
T ss_pred             cccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EEEEeeccccccc
Confidence            344555666677788899999999999999999998767999999999999999999999999764 7777788877655


Q ss_pred             HHhhcccCCCceeEEEEeCCccc-------------------------hHHHHHHHHhcc----CcCeEEEEeccccCcc
Q 029764           87 QLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLL----KVGGIAVYDNTLWGGT  137 (188)
Q Consensus        87 ~~~~~~~~~~~~D~i~id~~~~~-------------------------~~~~~~~~~~~L----~~gG~lv~~~~~~~g~  137 (188)
                      ...     ...||.|++|++.+.                         ..+.++.+.+.+    +|||.+|..-....- 
T Consensus       151 ~~~-----~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~-  224 (283)
T PF01189_consen  151 KKP-----ESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSP-  224 (283)
T ss_dssp             HHH-----TTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHG-
T ss_pred             ccc-----ccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHH-
Confidence            442     346999999953211                         135778888999    999999987655411 


Q ss_pred             ccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeEEEEeecC
Q 029764          138 VAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALG  178 (188)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~  178 (188)
                          ++.         ...++.|   +..+|+++...++..
T Consensus       225 ----eEN---------E~vV~~f---l~~~~~~~l~~~~~~  249 (283)
T PF01189_consen  225 ----EEN---------EEVVEKF---LKRHPDFELVPIPLP  249 (283)
T ss_dssp             ----GGT---------HHHHHHH---HHHSTSEEEECCESS
T ss_pred             ----HHH---------HHHHHHH---HHhCCCcEEEecccc
Confidence                111         1225555   445788876655433

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=99.10  E-value=1.1e-09  Score=81.33  Aligned_cols=104  Identities=15%  Similarity=0.245  Sum_probs=81.6

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHhcCC-CCcEEEEEcchHHHHHHHhhcccCC
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGV-DHKINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      ..++.+|||.++|-|+.++..++.   ++ +|+++|.+|..+..|+-|-=..++ +.+++++.||+.+.++.+     ++
T Consensus       132 ~~~G~rVLDtC~GLGYtAi~a~~r---GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~-----~D  203 (287)
T COG2521         132 VKRGERVLDTCTGLGYTAIEALER---GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDF-----DD  203 (287)
T ss_pred             cccCCEeeeeccCccHHHHHHHHc---CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcC-----Cc
Confidence            345779999999999999988875   54 999999999999988755211111 235899999999999887     46


Q ss_pred             CceeEEEEeCCcc------chHHHHHHHHhccCcCeEEEE
Q 029764           96 GSFDYAFVDADKD------NYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        96 ~~~D~i~id~~~~------~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      .+||+|+-|.+.-      -..++.+++.+.|++||.++-
T Consensus       204 ~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFH  243 (287)
T COG2521         204 ESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFH  243 (287)
T ss_pred             cccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEE
Confidence            7899999985321      135788999999999999864

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.10  E-value=1.5e-09  Score=85.64  Aligned_cols=83  Identities=13%  Similarity=0.252  Sum_probs=65.5

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc-CCCCcEEEEE-cchHHHHHHHhhcccCCCc
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-GVDHKINFIE-SEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~   97 (188)
                      +..++||||||+|.....++...+ +.+++++|+++.+++.|+++++.+ ++.+++++.. .+..+.......   ..+.
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~---~~~~  189 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIH---KNER  189 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccc---cCCc
Confidence            346899999999998888887765 789999999999999999999998 7888898865 444444433211   1468


Q ss_pred             eeEEEEeCC
Q 029764           98 FDYAFVDAD  106 (188)
Q Consensus        98 ~D~i~id~~  106 (188)
                      ||+|++..+
T Consensus       190 fDlivcNPP  198 (321)
T PRK11727        190 FDATLCNPP  198 (321)
T ss_pred             eEEEEeCCC
Confidence            999999853

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=99.10  E-value=8.1e-10  Score=86.85  Aligned_cols=118  Identities=19%  Similarity=0.231  Sum_probs=96.4

Q ss_pred             CCcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc-ch
Q 029764            3 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EA   81 (188)
Q Consensus         3 ~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~   81 (188)
                      +..|..++.|..|++..++..|||-.||||...+.....   +.+++++|++..++.-|+.|++..++.+ ..+... |+
T Consensus       180 s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da  255 (347)
T COG1041         180 SMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDA  255 (347)
T ss_pred             CcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEeccc
Confidence            467999999999999999999999999999998887664   7899999999999999999999988765 444444 77


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCc------------cchHHHHHHHHhccCcCeEEEEec
Q 029764           82 LSVLDQLLKYSENEGSFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        82 ~~~~~~~~~~~~~~~~~D~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      ... + +     ...++|.|..|.+.            .-+.++++.+.+.|++||++++.-
T Consensus       256 ~~l-p-l-----~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~  310 (347)
T COG1041         256 TNL-P-L-----RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAA  310 (347)
T ss_pred             ccC-C-C-----CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEec
Confidence            554 2 3     13469999999531            125678889999999999999853

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.09  E-value=2.3e-09  Score=80.52  Aligned_cols=108  Identities=8%  Similarity=0.014  Sum_probs=79.1

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHH------h-----cCCCCcEEEEEcchHHHHHHH
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK------K-----AGVDHKINFIESEALSVLDQL   88 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~------~-----~~~~~~~~~~~~d~~~~~~~~   88 (188)
                      ++.+||..|||.|..+.+||..   +.+|+++|+++.+++.+.+...      .     .--...+++.++|.++.-+.-
T Consensus        43 ~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~  119 (226)
T PRK13256         43 DSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA  119 (226)
T ss_pred             CCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence            4479999999999999999986   7799999999999998755210      0     001246899999998752110


Q ss_pred             hhcccCCCceeEEEEe-----CCccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           89 LKYSENEGSFDYAFVD-----ADKDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        89 ~~~~~~~~~~D~i~id-----~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                       +   ..+.||+|+-.     .+++....+.+.+.++|+|||.+++-....
T Consensus       120 -~---~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~  166 (226)
T PRK13256        120 -N---NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH  166 (226)
T ss_pred             -c---ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence             0   13689998643     345566789999999999999887765433

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=99.08  E-value=1.7e-09  Score=78.92  Aligned_cols=96  Identities=23%  Similarity=0.290  Sum_probs=81.3

Q ss_pred             EEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEE
Q 029764           23 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF  102 (188)
Q Consensus        23 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~  102 (188)
                      +++|||||.|.-++.+|-..| +.+++.+|.....+...++....++++ +++++++.+.+  ..      ...+||+|+
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p-~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~--~~------~~~~fd~v~  120 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARP-DLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE--PE------YRESFDVVT  120 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-T-TSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH--TT------TTT-EEEEE
T ss_pred             eEEecCCCCCChhHHHHHhCC-CCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc--cc------cCCCccEEE
Confidence            799999999999999999987 899999999999999999999999997 59999999977  11      258999999


Q ss_pred             EeCCccchHHHHHHHHhccCcCeEEEE
Q 029764          103 VDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus       103 id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      .-+.. ....+++.+.+++++||.+++
T Consensus       121 aRAv~-~l~~l~~~~~~~l~~~G~~l~  146 (184)
T PF02527_consen  121 ARAVA-PLDKLLELARPLLKPGGRLLA  146 (184)
T ss_dssp             EESSS-SHHHHHHHHGGGEEEEEEEEE
T ss_pred             eehhc-CHHHHHHHHHHhcCCCCEEEE
Confidence            98744 557888999999999999886

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.05  E-value=1.8e-09  Score=78.35  Aligned_cols=99  Identities=12%  Similarity=0.204  Sum_probs=72.8

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..++.+|||+|||.|....++...  ++.+.+++|++++.+..+.++        .+.++++|..+.+..+.     +++
T Consensus        11 I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r--------Gv~Viq~Dld~gL~~f~-----d~s   75 (193)
T PF07021_consen   11 IEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR--------GVSVIQGDLDEGLADFP-----DQS   75 (193)
T ss_pred             cCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc--------CCCEEECCHHHhHhhCC-----CCC
Confidence            456679999999999999888775  378999999999987766553        36789999988877763     689


Q ss_pred             eeEEEEeCC---ccchHHHHHHHHhccCcCeEEEEecc
Q 029764           98 FDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        98 ~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      ||.|++...   ...+...++++.+.-+ .+++.|.|.
T Consensus        76 FD~VIlsqtLQ~~~~P~~vL~EmlRVgr-~~IVsFPNF  112 (193)
T PF07021_consen   76 FDYVILSQTLQAVRRPDEVLEEMLRVGR-RAIVSFPNF  112 (193)
T ss_pred             ccEEehHhHHHhHhHHHHHHHHHHHhcC-eEEEEecCh
Confidence            999998753   2344556666654422 345555553

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.05  E-value=3.5e-10  Score=83.63  Aligned_cols=144  Identities=16%  Similarity=0.207  Sum_probs=96.0

Q ss_pred             CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029764           21 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  100 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~  100 (188)
                      -+++||+|||+|-.+..+-..   ..+++++|+|..|+++|.++    ++-+  ++.+.++..+++..     +...||+
T Consensus       126 F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea~~Fl~~~-----~~er~DL  191 (287)
T COG4976         126 FRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHEK----GLYD--TLYVAEAVLFLEDL-----TQERFDL  191 (287)
T ss_pred             cceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHhc----cchH--HHHHHHHHHHhhhc-----cCCcccc
Confidence            469999999999998887665   34899999999999988875    2222  45667776665543     3578999


Q ss_pred             EEEeC---CccchHHHHHHHHhccCcCeEEEEeccccCcc---ccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeEEEE
Q 029764          101 AFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLWGGT---VAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSH  174 (188)
Q Consensus       101 i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (188)
                      |....   .......++-....+|++||.+.|+--...+.   +..|..      |+   ...+.+.+......+++...
T Consensus       192 i~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~------Ry---AH~~~YVr~~l~~~Gl~~i~  262 (287)
T COG4976         192 IVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQ------RY---AHSESYVRALLAASGLEVIA  262 (287)
T ss_pred             hhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhh------hh---ccchHHHHHHHHhcCceEEE
Confidence            97532   23345667777889999999999964332221   111111      11   11345555555556776654


Q ss_pred             e-----------ecCCceEEEEEc
Q 029764          175 V-----------ALGDGITICRRI  187 (188)
Q Consensus       175 l-----------p~~~G~~~~~~~  187 (188)
                      +           |+..++.|++|+
T Consensus       263 ~~~ttiR~d~g~pv~G~L~iark~  286 (287)
T COG4976         263 IEDTTIRRDAGEPVPGILVIARKK  286 (287)
T ss_pred             eecccchhhcCCCCCCceEEEecC
Confidence            4           777888888875

>PRK00536 speE spermidine synthase; Provisional

Probab=99.05  E-value=2.3e-09  Score=82.20  Aligned_cols=100  Identities=9%  Similarity=0.065  Sum_probs=78.7

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcC--C-CCcEEEEEcchHHHHHHHhhccc
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSE   93 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~-~~~~~~~~~d~~~~~~~~~~~~~   93 (188)
                      ...+|++||=||.|-|..+..++++ +  .+|+.||+|++.++.+++.+....  + .+|++++..     +.+.     
T Consensus        69 ~h~~pk~VLIiGGGDGg~~REvLkh-~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-----~~~~-----  135 (262)
T PRK00536         69 TKKELKEVLIVDGFDLELAHQLFKY-D--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-----LLDL-----  135 (262)
T ss_pred             hCCCCCeEEEEcCCchHHHHHHHCc-C--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-----hhhc-----
Confidence            4567899999999999999999997 3  399999999999999999655432  2 367887751     1111     


Q ss_pred             CCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           94 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        94 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      ..++||+|++|..  ...++++.+.+.|+|||+++...
T Consensus       136 ~~~~fDVIIvDs~--~~~~fy~~~~~~L~~~Gi~v~Qs  171 (262)
T PRK00536        136 DIKKYDLIICLQE--PDIHKIDGLKRMLKEDGVFISVA  171 (262)
T ss_pred             cCCcCCEEEEcCC--CChHHHHHHHHhcCCCcEEEECC
Confidence            1368999999963  33678899999999999999854

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.04  E-value=1.8e-08  Score=72.05  Aligned_cols=102  Identities=22%  Similarity=0.228  Sum_probs=79.5

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   99 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   99 (188)
                      .++.++|||||+|..+.++++.+.++..+.++|++|++.+..++....++.  +++.++.|..+.+.        .++.|
T Consensus        43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~--------~~~VD  112 (209)
T KOG3191|consen   43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLR--------NESVD  112 (209)
T ss_pred             CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhc--------cCCcc
Confidence            478899999999999999999887788999999999999999998877664  47788888877654        37899


Q ss_pred             EEEEeCCc--------------------cc----hHHHHHHHHhccCcCeEEEEec
Q 029764          100 YAFVDADK--------------------DN----YCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus       100 ~i~id~~~--------------------~~----~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      +++.+.+.                    .+    ...++.++-.+|.|.|++.+.-
T Consensus       113 vLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~  168 (209)
T KOG3191|consen  113 VLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVA  168 (209)
T ss_pred             EEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeee
Confidence            99876310                    01    2344555567889999887753

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=99.02  E-value=4.7e-09  Score=78.03  Aligned_cols=98  Identities=21%  Similarity=0.298  Sum_probs=83.2

Q ss_pred             CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc-ee
Q 029764           21 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS-FD   99 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~D   99 (188)
                      +++++|||+|.|.-++.+|-..| +.+++-+|.....+...++.....+++ |++++++.+.++-++        .. ||
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p-~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~~~--------~~~~D  137 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFP-DLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFGQE--------KKQYD  137 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhcc-CCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcccc--------cccCc
Confidence            68999999999999999997777 778999999999999999999999986 599999999776432        23 99


Q ss_pred             EEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764          100 YAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus       100 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      +|.+-+ ......+.+.+.+++++||.+++
T Consensus       138 ~vtsRA-va~L~~l~e~~~pllk~~g~~~~  166 (215)
T COG0357         138 VVTSRA-VASLNVLLELCLPLLKVGGGFLA  166 (215)
T ss_pred             EEEeeh-ccchHHHHHHHHHhcccCCcchh
Confidence            999876 33557788899999999998764

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.02  E-value=1.3e-09  Score=83.25  Aligned_cols=100  Identities=16%  Similarity=0.212  Sum_probs=79.9

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      ...+.++|+|||+|.|..+..+++.+| +.+++..|. |+.++.+++       .++++++.+|..+.   +       +
T Consensus        97 d~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~---~-------P  157 (241)
T PF00891_consen   97 DFSGFKTVVDVGGGSGHFAIALARAYP-NLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDP---L-------P  157 (241)
T ss_dssp             TTTTSSEEEEET-TTSHHHHHHHHHST-TSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTC---C-------S
T ss_pred             cccCccEEEeccCcchHHHHHHHHHCC-CCcceeecc-Hhhhhcccc-------ccccccccccHHhh---h-------c
Confidence            344567999999999999999999998 899999999 889988887       56899999998732   2       3


Q ss_pred             ceeEEEEeC-----CccchHHHHHHHHhccCcC--eEEEEeccccC
Q 029764           97 SFDYAFVDA-----DKDNYCNYHERLMKLLKVG--GIAVYDNTLWG  135 (188)
Q Consensus        97 ~~D~i~id~-----~~~~~~~~~~~~~~~L~~g--G~lv~~~~~~~  135 (188)
                      .+|++++..     +.+....+++++.+.|+||  |.|++.+.+.+
T Consensus       158 ~~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~  203 (241)
T PF00891_consen  158 VADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLP  203 (241)
T ss_dssp             SESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEEC
T ss_pred             cccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccC
Confidence            399999874     2334567899999999999  99999988863

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=99.01  E-value=5.7e-10  Score=83.08  Aligned_cols=107  Identities=19%  Similarity=0.188  Sum_probs=77.5

Q ss_pred             CEEEEEcccchHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH-HHHHhhcccCCCcee
Q 029764           22 KKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-LDQLLKYSENEGSFD   99 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~D   99 (188)
                      .+|||+|||.|.....+.+..+. +..++++|.+|.+++..+++..-..  .++...+.|...- +...    ...+++|
T Consensus        73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~----~~~~svD  146 (264)
T KOG2361|consen   73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEP----PEEGSVD  146 (264)
T ss_pred             hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCC----CCcCccc
Confidence            37999999999999999987762 2789999999999999998743222  3455445444221 1111    2356788


Q ss_pred             EEEEe-----CCccchHHHHHHHHhccCcCeEEEEecccc
Q 029764          100 YAFVD-----ADKDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus       100 ~i~id-----~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      +|.+.     .++......++++.++|||||.|++.|.-.
T Consensus       147 ~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~  186 (264)
T KOG2361|consen  147 IITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGR  186 (264)
T ss_pred             eEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeeccc
Confidence            77432     356667889999999999999999987553

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=99.01  E-value=6.4e-09  Score=80.21  Aligned_cols=88  Identities=16%  Similarity=0.061  Sum_probs=68.7

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029764            5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   84 (188)
Q Consensus         5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   84 (188)
                      .+...+.+...+...++.+|||||||+|..+..+++.   ..+++++|+++++++.+++++..   .++++++++|+.+.
T Consensus        14 d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~~   87 (258)
T PRK14896         14 DDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALKV   87 (258)
T ss_pred             CHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEeccccC
Confidence            4455555555556667789999999999999999986   45899999999999999988754   24799999998764


Q ss_pred             HHHHhhcccCCCceeEEEEeCCc
Q 029764           85 LDQLLKYSENEGSFDYAFVDADK  107 (188)
Q Consensus        85 ~~~~~~~~~~~~~~D~i~id~~~  107 (188)
                      .         ...||.|+...+.
T Consensus        88 ~---------~~~~d~Vv~NlPy  101 (258)
T PRK14896         88 D---------LPEFNKVVSNLPY  101 (258)
T ss_pred             C---------chhceEEEEcCCc
Confidence            1         2457988887543

>KOG2730 consensus Methylase [General function prediction only]

Probab=99.00  E-value=1.8e-09  Score=79.33  Aligned_cols=87  Identities=20%  Similarity=0.204  Sum_probs=73.4

Q ss_pred             HHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029764           14 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   93 (188)
Q Consensus        14 ~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   93 (188)
                      ......++..|+|..||.|..++.+|...   ..|++||++|..+..|+.|++-.|.+++++|++||.++....+...  
T Consensus        88 ~v~~~~~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~--  162 (263)
T KOG2730|consen   88 RVVACMNAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKAD--  162 (263)
T ss_pred             HHHHhcCcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhh--
Confidence            33344477799999999999999999874   5999999999999999999999999999999999999988776432  


Q ss_pred             CCCceeEEEEeCC
Q 029764           94 NEGSFDYAFVDAD  106 (188)
Q Consensus        94 ~~~~~D~i~id~~  106 (188)
                       ...+|++|..++
T Consensus       163 -K~~~~~vf~spp  174 (263)
T KOG2730|consen  163 -KIKYDCVFLSPP  174 (263)
T ss_pred             -hheeeeeecCCC
Confidence             345889998753

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.99  E-value=1.6e-08  Score=78.56  Aligned_cols=101  Identities=16%  Similarity=0.072  Sum_probs=71.4

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029764            5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   84 (188)
Q Consensus         5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   84 (188)
                      .+...+.+...+...++.+|||+|||+|..+..++...   .+++++|+++++++.+++++..    ++++++++|+.+.
T Consensus        27 ~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~   99 (272)
T PRK00274         27 DENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKV   99 (272)
T ss_pred             CHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcC
Confidence            34444444444455677899999999999999999874   3999999999999999987642    4799999998764


Q ss_pred             HHHHhhcccCCCceeEEEEeCCccchHHHHHHHHh
Q 029764           85 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK  119 (188)
Q Consensus        85 ~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~  119 (188)
                      -  +.     .-.+|.|+.+.+.....+++..+..
T Consensus       100 ~--~~-----~~~~~~vv~NlPY~iss~ii~~~l~  127 (272)
T PRK00274        100 D--LS-----ELQPLKVVANLPYNITTPLLFHLLE  127 (272)
T ss_pred             C--HH-----HcCcceEEEeCCccchHHHHHHHHh
Confidence            1  10     0115777777554444555555543

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.96  E-value=6.8e-09  Score=81.02  Aligned_cols=83  Identities=12%  Similarity=0.061  Sum_probs=68.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++..++|++||.|+.+..+++.+++.++|+++|.++++++.+++.+..   .+++++++++..++...+.+.   ..++
T Consensus        18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~~---~~~v   91 (296)
T PRK00050         18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAEG---LGKV   91 (296)
T ss_pred             CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHcC---CCcc
Confidence            4567999999999999999999987678999999999999999998765   368999999998775544210   2379


Q ss_pred             eEEEEeCCc
Q 029764           99 DYAFVDADK  107 (188)
Q Consensus        99 D~i~id~~~  107 (188)
                      |.|++|...
T Consensus        92 DgIl~DLGv  100 (296)
T PRK00050         92 DGILLDLGV  100 (296)
T ss_pred             CEEEECCCc
Confidence            999998543

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.94  E-value=4e-08  Score=75.45  Aligned_cols=122  Identities=20%  Similarity=0.226  Sum_probs=95.2

Q ss_pred             HHHHHHHcCCCEEEEEcccchHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhh
Q 029764           12 MAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK   90 (188)
Q Consensus        12 l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   90 (188)
                      +..+....++.+||||.||.|.-.+......+. ...|...|.++..++..++.++..|+.+.++|.++|+++... +..
T Consensus       127 i~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~-l~~  205 (311)
T PF12147_consen  127 IARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDS-LAA  205 (311)
T ss_pred             HHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhH-hhc
Confidence            334445568889999999999998888887774 368999999999999999999999999878999999988522 211


Q ss_pred             cccCCCceeEEEEeCCc------cchHHHHHHHHhccCcCeEEEEeccccCcc
Q 029764           91 YSENEGSFDYAFVDADK------DNYCNYHERLMKLLKVGGIAVYDNTLWGGT  137 (188)
Q Consensus        91 ~~~~~~~~D~i~id~~~------~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~  137 (188)
                      .   ...++++++.+-.      .-....+..+...+.|||++|..+-.|+-.
T Consensus       206 l---~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ  255 (311)
T PF12147_consen  206 L---DPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ  255 (311)
T ss_pred             c---CCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc
Confidence            1   4678999887632      224456778889999999999988666443

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.93  E-value=4.1e-09  Score=77.86  Aligned_cols=90  Identities=14%  Similarity=0.215  Sum_probs=65.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++.+|||+|||+|..+..++...  ...++++|+++++++.+++.        +++++++|+.+.++.+     ..++|
T Consensus        12 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~-----~~~sf   76 (194)
T TIGR02081        12 PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAF-----PDKSF   76 (194)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhccccc-----CCCCc
Confidence            356799999999999998887653  45789999999998887641        3678888876533222     14689


Q ss_pred             eEEEEeC---CccchHHHHHHHHhccCc
Q 029764           99 DYAFVDA---DKDNYCNYHERLMKLLKV  123 (188)
Q Consensus        99 D~i~id~---~~~~~~~~~~~~~~~L~~  123 (188)
                      |+|++..   +..+...+++++.+.+++
T Consensus        77 D~Vi~~~~l~~~~d~~~~l~e~~r~~~~  104 (194)
T TIGR02081        77 DYVILSQTLQATRNPEEILDEMLRVGRH  104 (194)
T ss_pred             CEEEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence            9999874   334566777777776654

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.92  E-value=1.4e-09  Score=81.01  Aligned_cols=109  Identities=12%  Similarity=0.111  Sum_probs=75.1

Q ss_pred             HHHHHHHHcCCC-EEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029764           11 LMAMLLRLVNAK-KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   89 (188)
Q Consensus        11 ~l~~l~~~~~~~-~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   89 (188)
                      +...++...+.. .++|+|||+|..+..+|.++.   +|+++|+++++++.|++.....-+.....+...+..+.+.   
T Consensus        23 w~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g---   96 (261)
T KOG3010|consen   23 WFKKIASRTEGHRLAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLG---   96 (261)
T ss_pred             HHHHHHhhCCCcceEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCcccccCCccccccccccccC---
Confidence            444555555555 899999999988888888765   9999999999999998764332221222333333333321   


Q ss_pred             hcccCCCceeEEEEeC--CccchHHHHHHHHhccCcCe-EEEE
Q 029764           90 KYSENEGSFDYAFVDA--DKDNYCNYHERLMKLLKVGG-IAVY  129 (188)
Q Consensus        90 ~~~~~~~~~D~i~id~--~~~~~~~~~~~~~~~L~~gG-~lv~  129 (188)
                          ..++.|+|.+..  +.-+...++..+.++||+.| .+.+
T Consensus        97 ----~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iav  135 (261)
T KOG3010|consen   97 ----GEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAV  135 (261)
T ss_pred             ----CCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEE
Confidence                157999998763  23356789999999999888 5544

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.91  E-value=2.6e-08  Score=76.60  Aligned_cols=99  Identities=17%  Similarity=0.126  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029764            6 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   85 (188)
Q Consensus         6 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   85 (188)
                      +...+-+...+...++.+|||||||+|..+..++...+   +++++|+++++++.+++++..   .++++++++|+.+..
T Consensus        15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~   88 (253)
T TIGR00755        15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVD   88 (253)
T ss_pred             HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCC
Confidence            33333333344556778999999999999999998753   699999999999999987743   357999999987642


Q ss_pred             HHHhhcccCCCcee---EEEEeCCccchHHHHHHHHh
Q 029764           86 DQLLKYSENEGSFD---YAFVDADKDNYCNYHERLMK  119 (188)
Q Consensus        86 ~~~~~~~~~~~~~D---~i~id~~~~~~~~~~~~~~~  119 (188)
                      .         ..+|   +|+.+.+..-..+.+..+..
T Consensus        89 ~---------~~~d~~~~vvsNlPy~i~~~il~~ll~  116 (253)
T TIGR00755        89 L---------PDFPKQLKVVSNLPYNISSPLIFKLLE  116 (253)
T ss_pred             h---------hHcCCcceEEEcCChhhHHHHHHHHhc
Confidence            1         2344   66666544334455555543

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.90  E-value=1.8e-08  Score=76.41  Aligned_cols=92  Identities=12%  Similarity=0.091  Sum_probs=75.9

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029764            4 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   83 (188)
Q Consensus         4 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   83 (188)
                      ..+.+..-+..-+...++..|||||.|+|..|..+.+.   +.+|+++|++|.++...++.++..+.+++.+++++|...
T Consensus        42 kNp~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK  118 (315)
T KOG0820|consen   42 KNPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLK  118 (315)
T ss_pred             cCHHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEeccccc
Confidence            34555555555566778889999999999999999986   669999999999999999999888878899999999876


Q ss_pred             HHHHHhhcccCCCceeEEEEeCCc
Q 029764           84 VLDQLLKYSENEGSFDYAFVDADK  107 (188)
Q Consensus        84 ~~~~~~~~~~~~~~~D~i~id~~~  107 (188)
                      .         +...||.++.+.+.
T Consensus       119 ~---------d~P~fd~cVsNlPy  133 (315)
T KOG0820|consen  119 T---------DLPRFDGCVSNLPY  133 (315)
T ss_pred             C---------CCcccceeeccCCc
Confidence            5         23679999986543

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.88  E-value=3.6e-08  Score=82.76  Aligned_cols=104  Identities=18%  Similarity=0.175  Sum_probs=83.0

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   99 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   99 (188)
                      ....+||||||.|.....+|...| +..++++|+....+..+.+.....++. |+.++.+|+..+...+     ..+++|
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p-~~~~iGiE~~~~~~~~~~~~~~~~~l~-N~~~~~~~~~~~~~~~-----~~~sv~  419 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNP-DALFIGVEVYLNGVANVLKLAGEQNIT-NFLLFPNNLDLILNDL-----PNNSLD  419 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHhc-----Cccccc
Confidence            356899999999999999999987 889999999999988888888887875 5888888875444443     246799


Q ss_pred             EEEEe---CCcc--c------hHHHHHHHHhccCcCeEEEEe
Q 029764          100 YAFVD---ADKD--N------YCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus       100 ~i~id---~~~~--~------~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      .|++.   .++.  +      ...+++.+.+.|++||.+.+.
T Consensus       420 ~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~  461 (506)
T PRK01544        420 GIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA  461 (506)
T ss_pred             EEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence            99876   3321  1      357899999999999988773

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.87  E-value=9.3e-09  Score=80.65  Aligned_cols=103  Identities=20%  Similarity=0.291  Sum_probs=80.1

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..+++.|||+|||+|-.+.+.|++.  ..+|+++|.+ +++..|++.+..+++.+.++++++...++  .++     .++
T Consensus        58 lf~dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S-~ia~~a~~iv~~N~~~~ii~vi~gkvEdi--~LP-----~eK  127 (346)
T KOG1499|consen   58 LFKDKTVLDVGCGTGILSMFAAKAG--ARKVYAVEAS-SIADFARKIVKDNGLEDVITVIKGKVEDI--ELP-----VEK  127 (346)
T ss_pred             hcCCCEEEEcCCCccHHHHHHHHhC--cceEEEEech-HHHHHHHHHHHhcCccceEEEeecceEEE--ecC-----ccc
Confidence            5688999999999999999999975  4699999985 56699999999999999999999998775  331     378


Q ss_pred             eeEEEEeC--CccchHHHHHHHH----hccCcCeEEEEe
Q 029764           98 FDYAFVDA--DKDNYCNYHERLM----KLLKVGGIAVYD  130 (188)
Q Consensus        98 ~D~i~id~--~~~~~~~~~~~~~----~~L~~gG~lv~~  130 (188)
                      .|+|+...  ..-.+...++...    +.|+|||.+.-+
T Consensus       128 VDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~  166 (346)
T KOG1499|consen  128 VDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPD  166 (346)
T ss_pred             eeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccc
Confidence            99998762  2222233333332    799999998654

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.84  E-value=2.7e-08  Score=82.08  Aligned_cols=102  Identities=15%  Similarity=0.138  Sum_probs=76.6

Q ss_pred             CCEEEEEcccchHHHHHHHhhC---CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           21 AKKTIEIGVFTGYSLLLTALTI---PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~---~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      .+.|+++|||+|-.+...+++.   ....+|++||-++.+....++.+...+..++|+++++|..++-.        ..+
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l--------pek  258 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL--------PEK  258 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH--------SS-
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC--------CCc
Confidence            4689999999999987776654   12469999999999888888877888888999999999987622        368


Q ss_pred             eeEEEEe-----CCccchHHHHHHHHhccCcCeEEEEe
Q 029764           98 FDYAFVD-----ADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        98 ~D~i~id-----~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      .|+|+..     +..+...+.+....+.|||+|.++=.
T Consensus       259 vDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP~  296 (448)
T PF05185_consen  259 VDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMIPS  296 (448)
T ss_dssp             EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEESS
T ss_pred             eeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEeCc
Confidence            9999865     23344556778888999999988743

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PRK04148 hypothetical protein; Provisional

Probab=98.84  E-value=3.7e-08  Score=67.85  Aligned_cols=104  Identities=12%  Similarity=0.079  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHcCCCEEEEEcccchH-HHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764            8 AGQLMAMLLRLVNAKKTIEIGVFTGY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   86 (188)
Q Consensus         8 ~~~~l~~l~~~~~~~~vLeiG~g~G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   86 (188)
                      .+++|..-....++.+++|||||+|. .+..|++.   +..|+++|++++.++.++++        .++++.+|.++--.
T Consensus         4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~   72 (134)
T PRK04148          4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNL   72 (134)
T ss_pred             HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCH
Confidence            34445444444456789999999997 66677753   67999999999988877765        26788898876433


Q ss_pred             HHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           87 QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        87 ~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      .+      -..+|+|+.--++......+-.+.+.  -|.-+++.
T Consensus        73 ~~------y~~a~liysirpp~el~~~~~~la~~--~~~~~~i~  108 (134)
T PRK04148         73 EI------YKNAKLIYSIRPPRDLQPFILELAKK--INVPLIIK  108 (134)
T ss_pred             HH------HhcCCEEEEeCCCHHHHHHHHHHHHH--cCCCEEEE
Confidence            44      26899999887777766666666553  34445443

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=98.83  E-value=2.4e-08  Score=77.02  Aligned_cols=105  Identities=19%  Similarity=0.257  Sum_probs=69.6

Q ss_pred             CCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHH-hcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           20 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK-KAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        20 ~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      .|++|+=|||| --.+++.+++....+..++++|+++++...+++.++ ..++..++.|+.+|..+...+       ...
T Consensus       120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d-------l~~  192 (276)
T PF03059_consen  120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYD-------LKE  192 (276)
T ss_dssp             ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----------
T ss_pred             ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccc-------ccc
Confidence            35699999999 456777787654336789999999999999999888 667788899999998765333       368


Q ss_pred             eeEEEEeCCcc----chHHHHHHHHhccCcCeEEEEec
Q 029764           98 FDYAFVDADKD----NYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        98 ~D~i~id~~~~----~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      ||+||+.+-..    .-.+.++++.+.+++|+.+++-.
T Consensus       193 ~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs  230 (276)
T PF03059_consen  193 YDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRS  230 (276)
T ss_dssp             -SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred             CCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence            99999986443    77889999999999999999863

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=98.81  E-value=5.7e-08  Score=73.91  Aligned_cols=137  Identities=19%  Similarity=0.194  Sum_probs=84.8

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhC---C-CCCEEEEEeCCc--------------------------hhHHHHHHHHHh
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTI---P-EDGQITAIDVNR--------------------------ETYEIGLPIIKK   67 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~---~-~~~~v~~iD~~~--------------------------~~~~~a~~~~~~   67 (188)
                      ..-+..|+|+|+..|.+++.++..+   . .+.++++.|.-.                          -..+..++++.+
T Consensus        72 ~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~  151 (248)
T PF05711_consen   72 EDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFAR  151 (248)
T ss_dssp             TTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCC
T ss_pred             cCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHH
Confidence            3455689999999999887765432   1 246788988411                          123445566666


Q ss_pred             cCC-CCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCC-ccchHHHHHHHHhccCcCeEEEEeccccCccccCCCCCC
Q 029764           68 AGV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQV  145 (188)
Q Consensus        68 ~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~-~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~  145 (188)
                      .++ .+++.++.|...+.++...     ...+-++.+|++ .+.....++.+++.|.+||+|+++|...+|         
T Consensus       152 ~gl~~~~v~~vkG~F~dTLp~~p-----~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~DDY~~~g---------  217 (248)
T PF05711_consen  152 YGLLDDNVRFVKGWFPDTLPDAP-----IERIALLHLDCDLYESTKDALEFLYPRLSPGGIIIFDDYGHPG---------  217 (248)
T ss_dssp             TTTSSTTEEEEES-HHHHCCC-T-----T--EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEESSTTTHH---------
T ss_pred             cCCCcccEEEECCcchhhhccCC-----CccEEEEEEeccchHHHHHHHHHHHhhcCCCeEEEEeCCCChH---------
Confidence            664 3689999999988877642     467888888875 355678899999999999999999977633         


Q ss_pred             CCCcccchHHHHHHHHHHhhcCCCeEEEEeecCC
Q 029764          146 PDHFRGSSRQAILDLNRSLADDPRVQLSHVALGD  179 (188)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~  179 (188)
                             +.+++.+|.+.-    +....+.+++.
T Consensus       218 -------cr~AvdeF~~~~----gi~~~l~~id~  240 (248)
T PF05711_consen  218 -------CRKAVDEFRAEH----GITDPLHPIDW  240 (248)
T ss_dssp             -------HHHHHHHHHHHT----T--S--EE-SS
T ss_pred             -------HHHHHHHHHHHc----CCCCccEEecC
Confidence                   677777775553    44444556554

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.79  E-value=1e-07  Score=70.85  Aligned_cols=99  Identities=18%  Similarity=0.182  Sum_probs=73.4

Q ss_pred             EEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEE
Q 029764           24 TIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFV  103 (188)
Q Consensus        24 vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~i  103 (188)
                      |.||||-.|+.++++++.-. ..+++++|+++..+..|+++++..++.++++++.+|.++.++.       .+..|.|++
T Consensus         1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~-------~e~~d~ivI   72 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP-------GEDVDTIVI   72 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G-------GG---EEEE
T ss_pred             CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC-------CCCCCEEEE
Confidence            68999999999999998754 5689999999999999999999999999999999999886653       234799988


Q ss_pred             eC-CccchHHHHHHHHhccCcCeEEEEe
Q 029764          104 DA-DKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus       104 d~-~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      .+ .-.-..++++.....++....+|+.
T Consensus        73 AGMGG~lI~~ILe~~~~~~~~~~~lILq  100 (205)
T PF04816_consen   73 AGMGGELIIEILEAGPEKLSSAKRLILQ  100 (205)
T ss_dssp             EEE-HHHHHHHHHHTGGGGTT--EEEEE
T ss_pred             ecCCHHHHHHHHHhhHHHhccCCeEEEe
Confidence            75 3344567777777777776677775

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.79  E-value=5.9e-08  Score=78.02  Aligned_cols=105  Identities=18%  Similarity=0.212  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHcC--CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764            9 GQLMAMLLRLVN--AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   86 (188)
Q Consensus         9 ~~~l~~l~~~~~--~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   86 (188)
                      .+++.+.....+  +..+||+.||+|..++.+|...   .+|++||.++++++.|++|++.+++. +++|+.+++.++..
T Consensus       183 ~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~-n~~f~~~~~~~~~~  258 (352)
T PF05958_consen  183 EKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGID-NVEFIRGDAEDFAK  258 (352)
T ss_dssp             HHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHCCC
T ss_pred             HHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCC-cceEEEeeccchhH
Confidence            344444444333  2389999999999999999874   59999999999999999999999985 59999988766433


Q ss_pred             HHhh---------cccCCCceeEEEEeCCccchH-HHHHHH
Q 029764           87 QLLK---------YSENEGSFDYAFVDADKDNYC-NYHERL  117 (188)
Q Consensus        87 ~~~~---------~~~~~~~~D~i~id~~~~~~~-~~~~~~  117 (188)
                      .+..         .......+|+|++|.+..... ..++.+
T Consensus       259 ~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~  299 (352)
T PF05958_consen  259 ALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELI  299 (352)
T ss_dssp             HHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHH
T ss_pred             HHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHH
Confidence            2210         000123689999997654433 344444

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.78  E-value=3.2e-07  Score=70.09  Aligned_cols=102  Identities=14%  Similarity=0.088  Sum_probs=73.7

Q ss_pred             HHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH-HHHHhhccc
Q 029764           15 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-LDQLLKYSE   93 (188)
Q Consensus        15 l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~   93 (188)
                      .+...++.+|||||+|.|..|..+++.   ..+|+++|+|+..+...++.+.   ..++++++++|+... ++.+     
T Consensus        25 ~a~~~~~d~VlEIGpG~GaLT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~~l-----   93 (259)
T COG0030          25 AANISPGDNVLEIGPGLGALTEPLLER---AARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFPSL-----   93 (259)
T ss_pred             hcCCCCCCeEEEECCCCCHHHHHHHhh---cCeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcchhh-----
Confidence            445556779999999999999999997   4589999999999999998875   345899999999875 2221     


Q ss_pred             CCCceeEEEEeCCccchHHHHHHHHhccCc--CeEEEE
Q 029764           94 NEGSFDYAFVDADKDNYCNYHERLMKLLKV--GGIAVY  129 (188)
Q Consensus        94 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~--gG~lv~  129 (188)
                        ..++.|+.+.+..-..+++..+...-..  ..++++
T Consensus        94 --~~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~  129 (259)
T COG0030          94 --AQPYKVVANLPYNISSPILFKLLEEKFIIQDMVLMV  129 (259)
T ss_pred             --cCCCEEEEcCCCcccHHHHHHHHhccCccceEEEEe
Confidence              1678888886544444554444432222  455554

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.77  E-value=2.4e-08  Score=73.66  Aligned_cols=95  Identities=22%  Similarity=0.219  Sum_probs=70.2

Q ss_pred             CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029764           21 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  100 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~  100 (188)
                      +.-|||||||+|-++..+...   +-..+++|++|.|++.|.+.-  .  .  -.++.+|--+-++-      ..++||.
T Consensus        51 ~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~e--~--e--gdlil~DMG~Glpf------rpGtFDg  115 (270)
T KOG1541|consen   51 SGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVERE--L--E--GDLILCDMGEGLPF------RPGTFDG  115 (270)
T ss_pred             CcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHhh--h--h--cCeeeeecCCCCCC------CCCccce
Confidence            568999999999998887663   668999999999999999732  1  1  14666666544432      3689998


Q ss_pred             EEEe--------CC------ccchHHHHHHHHhccCcCeEEEEe
Q 029764          101 AFVD--------AD------KDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus       101 i~id--------~~------~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      +++-        ++      +.....||..+...|++|+.-|+.
T Consensus       116 ~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q  159 (270)
T KOG1541|consen  116 VISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ  159 (270)
T ss_pred             EEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence            8743        11      122456788899999999999886

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.71  E-value=1e-07  Score=75.85  Aligned_cols=107  Identities=19%  Similarity=0.208  Sum_probs=70.0

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcC---------CCCcEEEEEcchHH-HHHHHh
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG---------VDHKINFIESEALS-VLDQLL   89 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~---------~~~~~~~~~~d~~~-~~~~~~   89 (188)
                      ++.+|||+|||-|.-..-....  .-.+++|+|++.+.++.|++.+....         ..-...++.+|... .+....
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~  139 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL  139 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred             CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence            5679999999988755554443  24699999999999999999883321         11245678888764 222221


Q ss_pred             hcccCCCceeEEEEeC-------CccchHHHHHHHHhccCcCeEEEEe
Q 029764           90 KYSENEGSFDYAFVDA-------DKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        90 ~~~~~~~~~D~i~id~-------~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ..  ...+||+|=+-.       ..+....++.++...|+|||+++..
T Consensus       140 ~~--~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT  185 (331)
T PF03291_consen  140 PP--RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT  185 (331)
T ss_dssp             SS--TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             cc--cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            11  125899996542       2233456899999999999999874

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=98.70  E-value=4.2e-07  Score=66.88  Aligned_cols=110  Identities=17%  Similarity=0.232  Sum_probs=84.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++.+||++|-|.|-....+-+. + -.+-+.||.+|+.++..++.-  ..-..++-+..+--.+.++.+.     ++.|
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~-~-p~~H~IiE~hp~V~krmr~~g--w~ek~nViil~g~WeDvl~~L~-----d~~F  170 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEA-P-PDEHWIIEAHPDVLKRMRDWG--WREKENVIILEGRWEDVLNTLP-----DKHF  170 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhc-C-CcceEEEecCHHHHHHHHhcc--cccccceEEEecchHhhhcccc-----ccCc
Confidence            67789999999999887776554 3 346677899999988777642  2223678888898888888875     4679


Q ss_pred             eEEEEeCCc---cchHHHHHHHHhccCcCeEEEEeccccCcc
Q 029764           99 DYAFVDADK---DNYCNYHERLMKLLKVGGIAVYDNTLWGGT  137 (188)
Q Consensus        99 D~i~id~~~---~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~  137 (188)
                      |-|+-|...   ++...+.+.+.++|||+|++-+.|.+-.++
T Consensus       171 DGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~~~~  212 (271)
T KOG1709|consen  171 DGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGLGADN  212 (271)
T ss_pred             ceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEecCcccch
Confidence            999999753   445567788889999999999888775443

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=98.70  E-value=2.8e-07  Score=66.61  Aligned_cols=150  Identities=18%  Similarity=0.133  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCC---CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--
Q 029764            9 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP---EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--   83 (188)
Q Consensus         9 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--   83 (188)
                      --.++.++-..+|..|+|+|+-.|.+++++|...-   ...+|+++|++-..+..+-..      .+++.++.+++.+  
T Consensus        58 ~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~p~i~f~egss~dpa  131 (237)
T COG3510          58 MWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------VPDILFIEGSSTDPA  131 (237)
T ss_pred             HHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------CCCeEEEeCCCCCHH
Confidence            34456677788999999999999999999987542   135899999876654322211      2469999998765  


Q ss_pred             HHHHHhhcccCCCceeEEEEeCC--ccchHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHH
Q 029764           84 VLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLN  161 (188)
Q Consensus        84 ~~~~~~~~~~~~~~~D~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  161 (188)
                      +..+.... +...+--+++.|.+  +.+..+.++...++|..|-++++.|...++... +..++......     .+++.
T Consensus       132 i~eqi~~~-~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~-~~~p~~~g~gP-----~~AVe  204 (237)
T COG3510         132 IAEQIRRL-KNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLPG-PVLPWRFGGGP-----YEAVE  204 (237)
T ss_pred             HHHHHHHH-hcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCCC-cccchhcCCCh-----HHHHH
Confidence            22221111 01122234445544  445667778888999999999999988877643 22222111111     56666


Q ss_pred             HHhhcCC-CeE
Q 029764          162 RSLADDP-RVQ  171 (188)
Q Consensus       162 ~~~~~~~-~~~  171 (188)
                      .+++++| +|+
T Consensus       205 ~ylr~~p~~yE  215 (237)
T COG3510         205 AYLREFPQDYE  215 (237)
T ss_pred             HHHHhCCcccc
Confidence            6777778 454

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.66  E-value=6.6e-08  Score=69.27  Aligned_cols=78  Identities=14%  Similarity=0.192  Sum_probs=60.3

Q ss_pred             EEEeCCchhHHHHHHHHHhc--CCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeC---CccchHHHHHHHHhccCc
Q 029764           49 TAIDVNRETYEIGLPIIKKA--GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKV  123 (188)
Q Consensus        49 ~~iD~~~~~~~~a~~~~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~---~~~~~~~~~~~~~~~L~~  123 (188)
                      +++|+++++++.|+++....  +..++++++++|+.+. + +     ..++||+|++..   ...+....++++.++|||
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l-p-~-----~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkp   73 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL-P-F-----DDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKP   73 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC-C-C-----CCCCeeEEEecchhhcCCCHHHHHHHHHHHcCc
Confidence            48999999999998776532  2235799999998764 2 1     246899998764   345678899999999999


Q ss_pred             CeEEEEeccc
Q 029764          124 GGIAVYDNTL  133 (188)
Q Consensus       124 gG~lv~~~~~  133 (188)
                      ||.+++.+..
T Consensus        74 GG~l~i~d~~   83 (160)
T PLN02232         74 GSRVSILDFN   83 (160)
T ss_pred             CeEEEEEECC
Confidence            9999887654

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.64  E-value=1.2e-07  Score=65.59  Aligned_cols=94  Identities=20%  Similarity=0.322  Sum_probs=70.5

Q ss_pred             CCCcHHHHHHHHHHHH----HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEE
Q 029764            2 MGTAPDAGQLMAMLLR----LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI   77 (188)
Q Consensus         2 ~~~~~~~~~~l~~l~~----~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~   77 (188)
                      ++++|+.+.-|-..++    ...++.++|+|||+|..+..++  .+....++++|++|++++.+++|.+...+  ++.+.
T Consensus        26 Y~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~s--m~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlL  101 (185)
T KOG3420|consen   26 YPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFS--MPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLL  101 (185)
T ss_pred             CCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhh--cCCCceEEeeecCHHHHHHHhhchHHhhh--hhhee
Confidence            3456666655544444    3467899999999999885443  44467899999999999999999888765  35788


Q ss_pred             EcchHHHHHHHhhcccCCCceeEEEEeCC
Q 029764           78 ESEALSVLDQLLKYSENEGSFDYAFVDAD  106 (188)
Q Consensus        78 ~~d~~~~~~~~~~~~~~~~~~D~i~id~~  106 (188)
                      +.|..+....       .+.||.++++.+
T Consensus       102 qcdildle~~-------~g~fDtaviNpp  123 (185)
T KOG3420|consen  102 QCDILDLELK-------GGIFDTAVINPP  123 (185)
T ss_pred             eeeccchhcc-------CCeEeeEEecCC
Confidence            8888775433       488999999853

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.61  E-value=1.9e-07  Score=73.89  Aligned_cols=122  Identities=21%  Similarity=0.247  Sum_probs=82.0

Q ss_pred             CCcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhC------CCCCEEEEEeCCchhHHHHHHHHHhcCCCC-cEE
Q 029764            3 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI------PEDGQITAIDVNRETYEIGLPIIKKAGVDH-KIN   75 (188)
Q Consensus         3 ~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~------~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~   75 (188)
                      -|+....++|..++...++.+|+|.+||+|.....+...+      ....+++|+|+++..+..++-++.-.+... +..
T Consensus        29 ~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~  108 (311)
T PF02384_consen   29 YTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNIN  108 (311)
T ss_dssp             ---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCE
T ss_pred             ehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccc
Confidence            3678889999999987777899999999999888877643      126799999999999999998876555433 246


Q ss_pred             EEEcchHHHHHHHhhcccCCCceeEEEEeCCcc------------------------chHHHHHHHHhccCcCeEEEE
Q 029764           76 FIESEALSVLDQLLKYSENEGSFDYAFVDADKD------------------------NYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        76 ~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~------------------------~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      +..+|++......     ....||+|+...+..                        ....++..+...|++||.+.+
T Consensus       109 i~~~d~l~~~~~~-----~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~  181 (311)
T PF02384_consen  109 IIQGDSLENDKFI-----KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAI  181 (311)
T ss_dssp             EEES-TTTSHSCT-----ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEE
T ss_pred             ccccccccccccc-----cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeE
Confidence            7888876431110     136899999873211                        012578889999999997433

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PRK10742 putative methyltransferase; Provisional

Probab=98.59  E-value=5.9e-07  Score=68.08  Aligned_cols=88  Identities=10%  Similarity=0.160  Sum_probs=71.2

Q ss_pred             HHHHHHHHHcCCC--EEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc------CC--CCcEEEEEc
Q 029764           10 QLMAMLLRLVNAK--KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA------GV--DHKINFIES   79 (188)
Q Consensus        10 ~~l~~l~~~~~~~--~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~------~~--~~~~~~~~~   79 (188)
                      +.|..-+...++.  +|||+.+|+|..++.++..   +++|+++|-+|......+++++..      +.  ..+++++++
T Consensus        76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~  152 (250)
T PRK10742         76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA  152 (250)
T ss_pred             cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence            4444444445555  8999999999999999986   778999999999999999998875      22  257999999


Q ss_pred             chHHHHHHHhhcccCCCceeEEEEeCC
Q 029764           80 EALSVLDQLLKYSENEGSFDYAFVDAD  106 (188)
Q Consensus        80 d~~~~~~~~~~~~~~~~~~D~i~id~~  106 (188)
                      |+.+++...      ..+||+||+|..
T Consensus       153 da~~~L~~~------~~~fDVVYlDPM  173 (250)
T PRK10742        153 SSLTALTDI------TPRPQVVYLDPM  173 (250)
T ss_pred             cHHHHHhhC------CCCCcEEEECCC
Confidence            999988764      357999999953

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=98.59  E-value=3.4e-07  Score=75.14  Aligned_cols=122  Identities=16%  Similarity=0.135  Sum_probs=88.8

Q ss_pred             CCcHHHHHHHHHHHH----HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE
Q 029764            3 GTAPDAGQLMAMLLR----LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE   78 (188)
Q Consensus         3 ~~~~~~~~~l~~l~~----~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~   78 (188)
                      +++...++.|+..+.    ...++.++|+.||+|.+++.+|+.   ..+|++||++|+.+..|+.|...+|.+ |.+|++
T Consensus       362 Q~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~---~~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~Fi~  437 (534)
T KOG2187|consen  362 QTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG---VKRVIGVEISPDAVEDAEKNAQINGIS-NATFIV  437 (534)
T ss_pred             ccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc---ccceeeeecChhhcchhhhcchhcCcc-ceeeee
Confidence            455566777766654    556678999999999999999986   459999999999999999999999987 599999


Q ss_pred             cchHHHHHHHhhcccCCCcee-EEEEeCCccc-hHHHHHHHHhccCcCeEEEEe
Q 029764           79 SEALSVLDQLLKYSENEGSFD-YAFVDADKDN-YCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        79 ~d~~~~~~~~~~~~~~~~~~D-~i~id~~~~~-~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      |-+.+.++.+...  ..++-+ ++++|.+... ...++..+...-++.-.+.+.
T Consensus       438 gqaE~~~~sl~~~--~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyvS  489 (534)
T KOG2187|consen  438 GQAEDLFPSLLTP--CCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYVS  489 (534)
T ss_pred             cchhhccchhccc--CCCCCceEEEECCCcccccHHHHHHHHhccCccceEEEE
Confidence            9888888776533  112445 5677754333 345556665544455544443

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.58  E-value=1.4e-07  Score=71.13  Aligned_cols=93  Identities=15%  Similarity=0.137  Sum_probs=58.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHH-HHHHHHhcCCCCcEE-EEEcchHHH-HHHHhhcccCC
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI-GLPIIKKAGVDHKIN-FIESEALSV-LDQLLKYSENE   95 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~-a~~~~~~~~~~~~~~-~~~~d~~~~-~~~~~~~~~~~   95 (188)
                      .+++++||+|||+|..+..+++. . ..+|+++|+++.++.. .+++       .++. +...+.... ...+.   .+.
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~-g-a~~v~avD~~~~~l~~~l~~~-------~~v~~~~~~ni~~~~~~~~~---~d~  141 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQK-G-AKEVYGVDVGYNQLAEKLRQD-------ERVKVLERTNIRYVTPADIF---PDF  141 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHhcC-------CCeeEeecCCcccCCHhHcC---CCc
Confidence            35679999999999999999986 2 4689999999977764 2222       1221 222222211 01110   013


Q ss_pred             CceeEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764           96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      ..+|++|+..     ...+..+.++|++ |.+++
T Consensus       142 ~~~DvsfiS~-----~~~l~~i~~~l~~-~~~~~  169 (228)
T TIGR00478       142 ATFDVSFISL-----ISILPELDLLLNP-NDLTL  169 (228)
T ss_pred             eeeeEEEeeh-----HhHHHHHHHHhCc-CeEEE
Confidence            5778888753     3357888899999 76654

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=98.55  E-value=2.3e-06  Score=67.78  Aligned_cols=107  Identities=20%  Similarity=0.294  Sum_probs=83.4

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHH--HHhcC---C-CCcEEEEEcchHHHHHHHhhc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPI--IKKAG---V-DHKINFIESEALSVLDQLLKY   91 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~--~~~~~---~-~~~~~~~~~d~~~~~~~~~~~   91 (188)
                      .....++|-+|.|-|--...+.+ +|.-.+|+-+|.+|++++.++.+  +.+.+   + .++++++..|+.+.+..-   
T Consensus       287 ~~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a---  362 (508)
T COG4262         287 VRGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA---  362 (508)
T ss_pred             ccccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh---
Confidence            34567899999999998888876 45457999999999999999843  33322   2 378999999999988764   


Q ss_pred             ccCCCceeEEEEeCC-ccc-------hHHHHHHHHhccCcCeEEEEec
Q 029764           92 SENEGSFDYAFVDAD-KDN-------YCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        92 ~~~~~~~D~i~id~~-~~~-------~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                         ...||.|++|.. +..       -.++...+.+.|+++|.+|+..
T Consensus       363 ---~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa  407 (508)
T COG4262         363 ---ADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA  407 (508)
T ss_pred             ---cccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence               469999999953 221       2467788889999999999864

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.51  E-value=5.5e-06  Score=63.01  Aligned_cols=132  Identities=14%  Similarity=0.061  Sum_probs=84.8

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   99 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   99 (188)
                      +..++||||+|.|..+..++..+.   +|++.|.++.|....++    .|    .+.+.  ..+. .+      ...+||
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~rL~~----kg----~~vl~--~~~w-~~------~~~~fD  153 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRWRLSK----KG----FTVLD--IDDW-QQ------TDFKFD  153 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHHHHHh----CC----CeEEe--hhhh-hc------cCCceE
Confidence            556899999999999999998876   79999999988654443    34    33332  2222 11      146899


Q ss_pred             EEEEeC---CccchHHHHHHHHhccCcCeEEEEeccccCcc--------ccCCCCCCCCCcccchHHHHHHHHHHhhcCC
Q 029764          100 YAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLWGGT--------VAVPEEQVPDHFRGSSRQAILDLNRSLADDP  168 (188)
Q Consensus       100 ~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (188)
                      +|-+-.   ....+..+++.+.+.|+|+|.+++.=++-..+        ...|.+.-+..-.+ ....+..+.+ +-...
T Consensus       154 vIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~-~E~~v~~l~~-v~~p~  231 (265)
T PF05219_consen  154 VISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGAT-FEEQVSSLVN-VFEPA  231 (265)
T ss_pred             EEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCc-HHHHHHHHHH-HHHhc
Confidence            996531   24456788999999999999998855443211        22222111222233 5666777774 44455


Q ss_pred             CeEEE
Q 029764          169 RVQLS  173 (188)
Q Consensus       169 ~~~~~  173 (188)
                      +|+..
T Consensus       232 GF~v~  236 (265)
T PF05219_consen  232 GFEVE  236 (265)
T ss_pred             CCEEE
Confidence            66654

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.49  E-value=8e-07  Score=69.16  Aligned_cols=109  Identities=17%  Similarity=0.213  Sum_probs=76.6

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCC-----cEEEEEcchHH-HHHHHhhc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-----KINFIESEALS-VLDQLLKY   91 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-----~~~~~~~d~~~-~~~~~~~~   91 (188)
                      ..+...++++|||-|.-.+..-++-  -+.++|+|+..-.+..|++..+.+.-..     .+.|+.+|... .+..+...
T Consensus       115 ~~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~  192 (389)
T KOG1975|consen  115 TKRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF  192 (389)
T ss_pred             hccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC
Confidence            4566789999999999777665542  4699999999999999998877653222     36789998765 34443311


Q ss_pred             ccCCCceeEEEEe---C----CccchHHHHHHHHhccCcCeEEEEe
Q 029764           92 SENEGSFDYAFVD---A----DKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        92 ~~~~~~~D~i~id---~----~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                        .+.+||+|=+.   +    ......-++.++...|+|||++|-.
T Consensus       193 --~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT  236 (389)
T KOG1975|consen  193 --KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT  236 (389)
T ss_pred             --CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence              23459999432   2    1233455788889999999999863

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.48  E-value=8.8e-07  Score=69.37  Aligned_cols=100  Identities=15%  Similarity=0.167  Sum_probs=76.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .+++.|||+|||+|-.+.+.|.+-  ..+|++||. .++...|++.++.+++.+++.++.|...++  ++      .++.
T Consensus       176 F~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdi--eL------PEk~  244 (517)
T KOG1500|consen  176 FQDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDI--EL------PEKV  244 (517)
T ss_pred             cCCcEEEEecCCccHHHHHHHHhC--cceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccc--cC------chhc
Confidence            466789999999999998888763  469999998 579999999999999999999999998776  33      4789


Q ss_pred             eEEEEeC--CccchHHHHH---HHHhccCcCeEEEE
Q 029764           99 DYAFVDA--DKDNYCNYHE---RLMKLLKVGGIAVY  129 (188)
Q Consensus        99 D~i~id~--~~~~~~~~~~---~~~~~L~~gG~lv~  129 (188)
                      |+|+...  ..--....++   .+.+.|+|.|.+.-
T Consensus       245 DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfP  280 (517)
T KOG1500|consen  245 DVIISEPMGYMLVNERMLESYLHARKWLKPNGKMFP  280 (517)
T ss_pred             cEEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence            9998763  1111122222   23489999998763

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.47  E-value=2.3e-06  Score=63.68  Aligned_cols=118  Identities=16%  Similarity=0.223  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHH-------hcCC-CCcEEEEEcc
Q 029764            9 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK-------KAGV-DHKINFIESE   80 (188)
Q Consensus         9 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-------~~~~-~~~~~~~~~d   80 (188)
                      .++++ .+...+....+|+|||.|...+..|...+ -.+.+|||+.+...+.|++..+       ..+. ..++++.++|
T Consensus        32 ~~il~-~~~l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd  109 (205)
T PF08123_consen   32 SKILD-ELNLTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD  109 (205)
T ss_dssp             HHHHH-HTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred             HHHHH-HhCCCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence            34443 33566778999999999999888876654 4569999999998887765432       2333 2568888998


Q ss_pred             hHHH--HHHHhhcccCCCceeEEEEeCC--ccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           81 ALSV--LDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        81 ~~~~--~~~~~~~~~~~~~~D~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      ..+.  ...+      ....|+||++..  .+.....+......||+|..+|....+.
T Consensus       110 fl~~~~~~~~------~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~~~~~  161 (205)
T PF08123_consen  110 FLDPDFVKDI------WSDADVVFVNNTCFDPDLNLALAELLLELKPGARIISTKPFC  161 (205)
T ss_dssp             TTTHHHHHHH------GHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEESS-SS
T ss_pred             ccccHhHhhh------hcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEECCCcC
Confidence            7652  3333      246899999853  2334445566678899999988765554

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=98.47  E-value=2.2e-06  Score=69.40  Aligned_cols=107  Identities=17%  Similarity=0.206  Sum_probs=81.7

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCC-cEEEEEcchHHHHHHHhhcccCCCce
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      ++.++||.=+|+|.-++..+..++...+|+.-|+++++.+.+++|++.+++++ ++++.+.|+...+..      ....|
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~------~~~~f  122 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYS------RQERF  122 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCH------STT-E
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhh------ccccC
Confidence            34589999999999999999987645799999999999999999999999987 799999999876642      15899


Q ss_pred             eEEEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           99 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      |+|=+|. .....+|++.+.+.++.||+|.+..+-
T Consensus       123 D~IDlDP-fGSp~pfldsA~~~v~~gGll~vTaTD  156 (377)
T PF02005_consen  123 DVIDLDP-FGSPAPFLDSALQAVKDGGLLCVTATD  156 (377)
T ss_dssp             EEEEE---SS--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred             CEEEeCC-CCCccHhHHHHHHHhhcCCEEEEeccc
Confidence            9999995 334578999999999999999986543

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=98.43  E-value=5.1e-06  Score=65.19  Aligned_cols=85  Identities=12%  Similarity=0.100  Sum_probs=68.3

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..++..++|.-+|.|.-+..++..++ +++|+++|.+++++..+++.++..  .+++.+++++..++...+...  ...+
T Consensus        18 ~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~~--~~~~   92 (305)
T TIGR00006        18 IKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDEL--LVTK   92 (305)
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHhc--CCCc
Confidence            34567999999999999999999887 599999999999999999988754  468999999887765444221  1357


Q ss_pred             eeEEEEeCCc
Q 029764           98 FDYAFVDADK  107 (188)
Q Consensus        98 ~D~i~id~~~  107 (188)
                      +|.|++|...
T Consensus        93 vDgIl~DLGv  102 (305)
T TIGR00006        93 IDGILVDLGV  102 (305)
T ss_pred             ccEEEEeccC
Confidence            9999999543

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.41  E-value=3.1e-06  Score=74.00  Aligned_cols=95  Identities=12%  Similarity=0.154  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHH-cCCCEEEEEcccchHHHHHHHhhC---CC--------------------------------------
Q 029764            7 DAGQLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTI---PE--------------------------------------   44 (188)
Q Consensus         7 ~~~~~l~~l~~~-~~~~~vLeiG~g~G~~~~~la~~~---~~--------------------------------------   44 (188)
                      ..+.-|-.++.- .++..++|.+||+|...+..|...   ++                                      
T Consensus       176 tlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~  255 (702)
T PRK11783        176 NLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAEL  255 (702)
T ss_pred             HHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence            333333334433 356799999999999888766521   11                                      


Q ss_pred             CCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCC
Q 029764           45 DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD  106 (188)
Q Consensus        45 ~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~  106 (188)
                      ..+++++|+++++++.|++|+...|+.+.+++.++|+.+.....     ..++||+|+.+.+
T Consensus       256 ~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~-----~~~~~d~IvtNPP  312 (702)
T PRK11783        256 PSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL-----PKGPTGLVISNPP  312 (702)
T ss_pred             CceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc-----ccCCCCEEEECCC
Confidence            23799999999999999999999999888999999987653221     1257999999853

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.41  E-value=1.9e-06  Score=72.91  Aligned_cols=99  Identities=18%  Similarity=0.155  Sum_probs=66.2

Q ss_pred             CcHHHHHHHHHHHHHc-------CCCEEEEEcccchHHHHHHHhhCCC-------CCEEEEEeCCchhHHHHHHHHHhcC
Q 029764            4 TAPDAGQLMAMLLRLV-------NAKKTIEIGVFTGYSLLLTALTIPE-------DGQITAIDVNRETYEIGLPIIKKAG   69 (188)
Q Consensus         4 ~~~~~~~~l~~l~~~~-------~~~~vLeiG~g~G~~~~~la~~~~~-------~~~v~~iD~~~~~~~~a~~~~~~~~   69 (188)
                      |++..+++|..++...       ...+|+|.+||+|...+.++..++.       ...++++|+++..+..++.++...+
T Consensus         8 TP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~   87 (524)
T TIGR02987         8 TPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA   87 (524)
T ss_pred             CcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC
Confidence            5666777776654321       3458999999999999988876631       2578999999999999999987765


Q ss_pred             CCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeC
Q 029764           70 VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA  105 (188)
Q Consensus        70 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~  105 (188)
                      . ..+.+...|..........  ...+.||+|+.+.
T Consensus        88 ~-~~~~i~~~d~l~~~~~~~~--~~~~~fD~IIgNP  120 (524)
T TIGR02987        88 L-LEINVINFNSLSYVLLNIE--SYLDLFDIVITNP  120 (524)
T ss_pred             C-CCceeeecccccccccccc--cccCcccEEEeCC
Confidence            1 2245555654431110100  0136899998774

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=98.40  E-value=1.9e-06  Score=59.77  Aligned_cols=84  Identities=25%  Similarity=0.397  Sum_probs=58.8

Q ss_pred             EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeC------Cc------cchHHHH
Q 029764           47 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA------DK------DNYCNYH  114 (188)
Q Consensus        47 ~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~------~~------~~~~~~~  114 (188)
                      +|+++|+.+++++..++.+++.++.++++++...-......+.     .+++|+++.+.      ++      ......+
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~-----~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al   75 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIP-----EGPVDAAIFNLGYLPGGDKSITTKPETTLKAL   75 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT-------S--EEEEEEEESB-CTS-TTSB--HHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCc-----cCCcCEEEEECCcCCCCCCCCCcCcHHHHHHH
Confidence            6899999999999999999999988899998876544433231     24899998772      22      2235678


Q ss_pred             HHHHhccCcCeEEEEeccccCcc
Q 029764          115 ERLMKLLKVGGIAVYDNTLWGGT  137 (188)
Q Consensus       115 ~~~~~~L~~gG~lv~~~~~~~g~  137 (188)
                      +.+.++|++||.+++.  .++|.
T Consensus        76 ~~al~lL~~gG~i~iv--~Y~GH   96 (140)
T PF06962_consen   76 EAALELLKPGGIITIV--VYPGH   96 (140)
T ss_dssp             HHHHHHEEEEEEEEEE--E--ST
T ss_pred             HHHHHhhccCCEEEEE--EeCCC
Confidence            8889999999999985  55554

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.40  E-value=2.9e-06  Score=59.51  Aligned_cols=65  Identities=18%  Similarity=0.303  Sum_probs=51.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhC---CCCCEEEEEeCCchhHHHHHHHHHhcC--CCCcEEEEEcchHH
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTI---PEDGQITAIDVNRETYEIGLPIIKKAG--VDHKINFIESEALS   83 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~---~~~~~v~~iD~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~   83 (188)
                      .+..+|+|+|||.|+.+..++..+   .++.+|++||.+++..+.+++..+..+  ...+..+..++..+
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   93 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIAD   93 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhh
Confidence            677799999999999999999822   137899999999999999999888776  43456666665543

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.39  E-value=1.4e-06  Score=64.41  Aligned_cols=105  Identities=22%  Similarity=0.258  Sum_probs=63.8

Q ss_pred             CCCEEEEEcccchHHHHHHHhhC--------CCCCEEEEEeCCchhHHHHHH------------------HH-HhcC---
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTI--------PEDGQITAIDVNRETYEIGLP------------------II-KKAG---   69 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~--------~~~~~v~~iD~~~~~~~~a~~------------------~~-~~~~---   69 (188)
                      ++-+|+-.||++|.-+..+|-.+        +...+|+++|+|+.+++.|++                  .+ ...+   
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            45699999999996444433211        113589999999999999974                  11 0101   


Q ss_pred             -----CCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeC-----CccchHHHHHHHHhccCcCeEEEEec
Q 029764           70 -----VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        70 -----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                           +..+++|...|..+..+       ..+.||+||+-.     +.......++.+.+.|+|||+|++-.
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~-------~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~  175 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDP-------PFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH  175 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S-------------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred             eEChHHcCceEEEecccCCCCc-------ccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence                 11467888888777212       247999999874     34445778999999999999999853

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.38  E-value=9.2e-06  Score=59.93  Aligned_cols=103  Identities=19%  Similarity=0.215  Sum_probs=71.4

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCC
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENE   95 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~   95 (188)
                      ..++..|+|+|+..|+++..+++.+.++++|+++|+.|-.            .-.++.++++|..+  ....+... ...
T Consensus        43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~------------~~~~V~~iq~d~~~~~~~~~l~~~-l~~  109 (205)
T COG0293          43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------------PIPGVIFLQGDITDEDTLEKLLEA-LGG  109 (205)
T ss_pred             ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc------------cCCCceEEeeeccCccHHHHHHHH-cCC
Confidence            4456899999999999999999998767889999997632            11348888887653  22222221 123


Q ss_pred             CceeEEEEeCCc--------cc------hHHHHHHHHhccCcCeEEEEeccc
Q 029764           96 GSFDYAFVDADK--------DN------YCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        96 ~~~D~i~id~~~--------~~------~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      ..+|+|+.|..+        ++      ....++.+...|++||.+++...-
T Consensus       110 ~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq  161 (205)
T COG0293         110 APVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ  161 (205)
T ss_pred             CCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence            457999999543        11      123445556899999999997543

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.37  E-value=4.9e-06  Score=66.67  Aligned_cols=117  Identities=16%  Similarity=0.173  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCC---CC----------------------------C-------EE
Q 029764            7 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP---ED----------------------------G-------QI   48 (188)
Q Consensus         7 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~---~~----------------------------~-------~v   48 (188)
                      ..+.-|-.++.-.+...++|--||+|...+..|...+   |+                            .       .+
T Consensus       178 tLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~  257 (381)
T COG0116         178 TLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPII  257 (381)
T ss_pred             HHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceE
Confidence            3344444455555666899999999999888776543   11                            1       37


Q ss_pred             EEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCc-----------cchHHHHHHH
Q 029764           49 TAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----------DNYCNYHERL  117 (188)
Q Consensus        49 ~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~-----------~~~~~~~~~~  117 (188)
                      +|+|+++.+++.|+.|....|+.+.++|.++|+.++-+.       ...+|+|+++.+.           .-|..+.+.+
T Consensus       258 ~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~-------~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~l  330 (381)
T COG0116         258 YGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP-------LEEYGVVISNPPYGERLGSEALVAKLYREFGRTL  330 (381)
T ss_pred             EEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC-------CCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHH
Confidence            899999999999999999999999999999999765322       1689999998532           1345566677


Q ss_pred             HhccCcCeEEEEe
Q 029764          118 MKLLKVGGIAVYD  130 (188)
Q Consensus       118 ~~~L~~gG~lv~~  130 (188)
                      .+.++..+..|+.
T Consensus       331 k~~~~~ws~~v~t  343 (381)
T COG0116         331 KRLLAGWSRYVFT  343 (381)
T ss_pred             HHHhcCCceEEEE
Confidence            7888888888774

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.34  E-value=2e-06  Score=60.11  Aligned_cols=57  Identities=19%  Similarity=0.283  Sum_probs=49.1

Q ss_pred             EEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch
Q 029764           23 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   81 (188)
Q Consensus        23 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   81 (188)
                      +++|+|||.|..+.+++...+ ..+++++|++|+.+..++++++.+++. ++.++....
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~-~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al   57 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGA-EGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAV   57 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCC-CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeee
Confidence            489999999999999998876 679999999999999999999888765 477776554

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=98.32  E-value=9.3e-06  Score=65.37  Aligned_cols=111  Identities=19%  Similarity=0.225  Sum_probs=86.5

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH-HHHhhcccCC
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL-DQLLKYSENE   95 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~~   95 (188)
                      .-+++.+|||..+..|.=+.++|.-+...+.|++-|.+...++..++|+.++|+.+ .-....|..++- ..+      .
T Consensus       238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~~~~~------~  310 (460)
T KOG1122|consen  238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFPEKEF------P  310 (460)
T ss_pred             CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCccccccccc------C
Confidence            45567799999999999999999988877999999999999999999999999765 334556654432 112      3


Q ss_pred             CceeEEEEeCCccc-------------------------hHHHHHHHHhccCcCeEEEEecccc
Q 029764           96 GSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        96 ~~~D~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      ++||-|++|++.+.                         ..+++..+.+++++||+||.+....
T Consensus       311 ~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI  374 (460)
T KOG1122|consen  311 GSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI  374 (460)
T ss_pred             cccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence            48999999954322                         1356777789999999999876654

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=98.30  E-value=2.7e-05  Score=57.78  Aligned_cols=111  Identities=18%  Similarity=0.193  Sum_probs=85.6

Q ss_pred             HHHHHHHc-CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhh
Q 029764           12 MAMLLRLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK   90 (188)
Q Consensus        12 l~~l~~~~-~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   90 (188)
                      |.++++.. +..++.||||-.++.++++.+.-+ ...++..|+++..+..|.+++.+.++.++++...+|.+..+..   
T Consensus         7 L~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~-~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~---   82 (226)
T COG2384           7 LTTVANLVKQGARIADIGSDHAYLPIYLVKNNP-ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLEL---   82 (226)
T ss_pred             HHHHHHHHHcCCceeeccCchhHhHHHHHhcCC-cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCc---
Confidence            44444433 344599999999999999999866 7899999999999999999999999999999999998654322   


Q ss_pred             cccCCCceeEEEEeC-CccchHHHHHHHHhccCcCeEEEEe
Q 029764           91 YSENEGSFDYAFVDA-DKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        91 ~~~~~~~~D~i~id~-~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                          ...+|.|.+.+ .-.....++++-...|+.--.+|+.
T Consensus        83 ----~d~~d~ivIAGMGG~lI~~ILee~~~~l~~~~rlILQ  119 (226)
T COG2384          83 ----EDEIDVIVIAGMGGTLIREILEEGKEKLKGVERLILQ  119 (226)
T ss_pred             ----cCCcCEEEEeCCcHHHHHHHHHHhhhhhcCcceEEEC
Confidence                35799999876 3334566777777777655556653

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.30  E-value=3.2e-06  Score=61.67  Aligned_cols=97  Identities=20%  Similarity=0.293  Sum_probs=60.2

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH-----HHHHHhhcccC
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS-----VLDQLLKYSEN   94 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~~~~~   94 (188)
                      ++.++||+||+.|.++..++....+..+|+++|+.+..           +. ..+..+++|..+     .+.....  ..
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~-----------~~-~~~~~i~~d~~~~~~~~~i~~~~~--~~   88 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD-----------PL-QNVSFIQGDITNPENIKDIRKLLP--ES   88 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG-----------S--TTEEBTTGGGEEEEHSHHGGGSHG--TT
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEeccccc-----------cc-cceeeeecccchhhHHHhhhhhcc--cc
Confidence            34799999999999999999986336899999998761           11 235555555432     1222110  01


Q ss_pred             CCceeEEEEeCCcc--------c------hHHHHHHHHhccCcCeEEEEe
Q 029764           95 EGSFDYAFVDADKD--------N------YCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        95 ~~~~D~i~id~~~~--------~------~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ...+|+|++|..+.        .      ....+..+.+.|++||.+|+.
T Consensus        89 ~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K  138 (181)
T PF01728_consen   89 GEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIK  138 (181)
T ss_dssp             TCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred             ccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence            36899999997210        0      122344455789999988875

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=98.29  E-value=1.5e-05  Score=61.44  Aligned_cols=142  Identities=17%  Similarity=0.199  Sum_probs=107.1

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc--CCC-CcEEEEEcchHHHHHHHhhccc
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GVD-HKINFIESEALSVLDQLLKYSE   93 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~~-~~~~~~~~d~~~~~~~~~~~~~   93 (188)
                      +..+++.+|-||-|-|......+++ +.-..+..+|++...++..++.+...  ++. +++.++.||...++....    
T Consensus       118 s~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~----  192 (337)
T KOG1562|consen  118 SHPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK----  192 (337)
T ss_pred             cCCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc----
Confidence            4678899999999999988888777 43578999999999999999988764  443 679999999998887652    


Q ss_pred             CCCceeEEEEeCCcc-------chHHHHHHHHhccCcCeEEEEec-cccCccccCCCCCCCCCcccchHHHHHHHHHHhh
Q 029764           94 NEGSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYDN-TLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLA  165 (188)
Q Consensus        94 ~~~~~D~i~id~~~~-------~~~~~~~~~~~~L~~gG~lv~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (188)
                       .++||+|+.|.+..       ....++..+.+.||++|+++... ..| -           + .. ....+++|-..+.
T Consensus       193 -~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~w-l-----------~-~~-~i~e~r~~~~~~f  257 (337)
T KOG1562|consen  193 -ENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMW-L-----------H-LD-YIKEGRSFCYVIF  257 (337)
T ss_pred             -cCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceeh-H-----------H-HH-HHHHHHHhHHHhc
Confidence             47999999985321       13457788889999999988743 222 0           0 00 4555788888877


Q ss_pred             cCCCeEEEEeecC
Q 029764          166 DDPRVQLSHVALG  178 (188)
Q Consensus       166 ~~~~~~~~~lp~~  178 (188)
                      ..-++-.+..|..
T Consensus       258 ~~t~ya~ttvPTy  270 (337)
T KOG1562|consen  258 DLTAYAITTVPTY  270 (337)
T ss_pred             CccceeeecCCCC
Confidence            7777777777744

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=98.29  E-value=1e-05  Score=63.80  Aligned_cols=98  Identities=13%  Similarity=0.172  Sum_probs=76.3

Q ss_pred             CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029764           21 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  100 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~  100 (188)
                      -...+|+|.|.|..+..+...+|   +|-+++.+...+..+.+++. .|    ++.+-+|.++..          +.-|+
T Consensus       178 v~~avDvGgGiG~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~----------P~~da  239 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDT----------PKGDA  239 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhCC---CCceeecCHHHHHhhhhhhc-CC----cceecccccccC----------CCcCe
Confidence            46899999999999999999776   68888888888877777664 33    777788876543          34568


Q ss_pred             EEEe---C--CccchHHHHHHHHhccCcCeEEEEeccccCc
Q 029764          101 AFVD---A--DKDNYCNYHERLMKLLKVGGIAVYDNTLWGG  136 (188)
Q Consensus       101 i~id---~--~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  136 (188)
                      ||+-   +  .-++..+++++|+..|+|||.|++.+...+.
T Consensus       240 I~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~  280 (342)
T KOG3178|consen  240 IWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPE  280 (342)
T ss_pred             EEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCC
Confidence            8865   2  2345678999999999999999988876543

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.28  E-value=1.4e-06  Score=68.00  Aligned_cols=105  Identities=22%  Similarity=0.246  Sum_probs=69.7

Q ss_pred             CCCEEEEEcccchHHHHHHH----hhCC---CCCEEEEEeCCchhHHHHHHH------------------HHhc-----C
Q 029764           20 NAKKTIEIGVFTGYSLLLTA----LTIP---EDGQITAIDVNRETYEIGLPI------------------IKKA-----G   69 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la----~~~~---~~~~v~~iD~~~~~~~~a~~~------------------~~~~-----~   69 (188)
                      ++.+|+-.||.+|--+..+|    ...+   ...+|+++|+++.+++.|++.                  +...     +
T Consensus       115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~  194 (287)
T PRK10611        115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG  194 (287)
T ss_pred             CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence            34699999999996444433    3222   136899999999999999864                  1110     0


Q ss_pred             -------CCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeC-----CccchHHHHHHHHhccCcCeEEEEe
Q 029764           70 -------VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        70 -------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                             +...++|.+.|..+.  .+    +..+.||+||+-.     +.+.....++.+.+.|+|||++++-
T Consensus       195 ~~~v~~~lr~~V~F~~~NL~~~--~~----~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG  261 (287)
T PRK10611        195 LVRVRQELANYVDFQQLNLLAK--QW----AVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG  261 (287)
T ss_pred             eEEEChHHHccCEEEcccCCCC--CC----ccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence                   113455666665431  00    0136899999742     3345678899999999999999874

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.27  E-value=5.5e-06  Score=64.07  Aligned_cols=124  Identities=12%  Similarity=0.056  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029764            6 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   85 (188)
Q Consensus         6 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   85 (188)
                      +...+-+...+...++..|||||+|.|..|..++...   .+++++|.++...+..++.+.   ..++++++.+|+.+.-
T Consensus        16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~   89 (262)
T PF00398_consen   16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWD   89 (262)
T ss_dssp             HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh---hcccceeeecchhccc
Confidence            4444555555566678899999999999999999874   699999999999999998765   2357999999998642


Q ss_pred             HHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccC---cCeEEEEeccccCcccc
Q 029764           86 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLK---VGGIAVYDNTLWGGTVA  139 (188)
Q Consensus        86 ~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~---~gG~lv~~~~~~~g~~~  139 (188)
                      ....    .......|+...+......++..+...-+   ...++++..-.......
T Consensus        90 ~~~~----~~~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~vq~e~a~rl~a  142 (262)
T PF00398_consen   90 LYDL----LKNQPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLMVQKEVAERLLA  142 (262)
T ss_dssp             GGGH----CSSSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEEEEHHHHHHHHT
T ss_pred             cHHh----hcCCceEEEEEecccchHHHHHHHhhcccccccceEEEEehhhhhhccC
Confidence            1100    01244566666555444566666665333   34566665544444333

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=98.26  E-value=1.3e-05  Score=59.74  Aligned_cols=106  Identities=18%  Similarity=0.140  Sum_probs=72.6

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      +.++.+||=+|..+|.....++....+++.|+++|.++......-+..++-   +|+-.+.+|+..-....    .--+.
T Consensus        71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~----~lv~~  143 (229)
T PF01269_consen   71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYR----MLVEM  143 (229)
T ss_dssp             --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGT----TTS--
T ss_pred             CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhh----ccccc
Confidence            556789999999999999999988877899999999997655554443332   46888888885321110    01358


Q ss_pred             eeEEEEeCCccch-HHHHHHHHhccCcCeEEEEe
Q 029764           98 FDYAFVDADKDNY-CNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        98 ~D~i~id~~~~~~-~~~~~~~~~~L~~gG~lv~~  130 (188)
                      .|+||.|-..++. .-+..++...||+||.+++.
T Consensus       144 VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~  177 (229)
T PF01269_consen  144 VDVIFQDVAQPDQARIAALNARHFLKPGGHLIIS  177 (229)
T ss_dssp             EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccEEEecCCChHHHHHHHHHHHhhccCCcEEEEE
Confidence            9999999655443 44567777899999987763

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.26  E-value=5.6e-06  Score=63.88  Aligned_cols=103  Identities=20%  Similarity=0.225  Sum_probs=68.7

Q ss_pred             CCEEEEEcccchH----HHHHHHhhCCC----CCEEEEEeCCchhHHHHHHHHHh-----cCCC----------------
Q 029764           21 AKKTIEIGVFTGY----SLLLTALTIPE----DGQITAIDVNRETYEIGLPIIKK-----AGVD----------------   71 (188)
Q Consensus        21 ~~~vLeiG~g~G~----~~~~la~~~~~----~~~v~~iD~~~~~~~~a~~~~~~-----~~~~----------------   71 (188)
                      +-+|...||++|-    .++.+.+..+.    ..+|++.|+|...++.|++-.=.     .+++                
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y  176 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY  176 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence            6799999999994    44444455542    57899999999999999742110     1111                


Q ss_pred             -------CcEEEEEcchHHHHHHHhhcccCCCceeEEEEeC-----CccchHHHHHHHHhccCcCeEEEEe
Q 029764           72 -------HKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        72 -------~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                             ..|.|...|..+-.+       ..+.||+||+-.     +.+.....++.....|+|||+|++-
T Consensus       177 ~v~~~ir~~V~F~~~NLl~~~~-------~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG  240 (268)
T COG1352         177 RVKEELRKMVRFRRHNLLDDSP-------FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG  240 (268)
T ss_pred             EEChHHhcccEEeecCCCCCcc-------ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence                   123343444332211       146799999752     4455567889999999999999984

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.24  E-value=3.7e-06  Score=60.78  Aligned_cols=99  Identities=9%  Similarity=0.122  Sum_probs=76.5

Q ss_pred             CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029764           22 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  101 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i  101 (188)
                      ..+.|+|+|+|-.+...|..   .-+|++||.+|.....|++|+.-.|. ++++++.+|+.+.  .       ....|+|
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y--~-------fe~ADvv  100 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDY--D-------FENADVV  100 (252)
T ss_pred             hceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecccccc--c-------cccccee
Confidence            68999999999998887776   35999999999999999999866564 5799999999775  1       2567888


Q ss_pred             EEeC-----CccchHHHHHHHHhccCcCeEEEEeccc
Q 029764          102 FVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus       102 ~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      ++..     -.+..-+.++.+.+.|+..+.++-..+.
T Consensus       101 icEmlDTaLi~E~qVpV~n~vleFLr~d~tiiPq~v~  137 (252)
T COG4076         101 ICEMLDTALIEEKQVPVINAVLEFLRYDPTIIPQEVR  137 (252)
T ss_pred             HHHHhhHHhhcccccHHHHHHHHHhhcCCccccHHHh
Confidence            7542     1123346677888899999988765544

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.12  E-value=3.3e-05  Score=60.16  Aligned_cols=101  Identities=12%  Similarity=0.125  Sum_probs=63.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .+|.+|||+|||.|..+......++.-.+++++|.++.+++.++..++......... ...+.   .....    .....
T Consensus        32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~-~~~~~---~~~~~----~~~~~  103 (274)
T PF09243_consen   32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAE-WRRVL---YRDFL----PFPPD  103 (274)
T ss_pred             CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccch-hhhhh---hcccc----cCCCC
Confidence            467899999999998777666666645689999999999999998776543111111 11111   11110    12345


Q ss_pred             eEEEEeC-----CccchHHHHHHHHhccCcCeEEEE
Q 029764           99 DYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        99 D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      |+|++..     .......+++.++..+++  .||+
T Consensus       104 DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVl  137 (274)
T PF09243_consen  104 DLVIASYVLNELPSAARAELVRSLWNKTAP--VLVL  137 (274)
T ss_pred             cEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEE
Confidence            8988763     124455677777777666  4444

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=98.09  E-value=9.7e-05  Score=57.38  Aligned_cols=86  Identities=14%  Similarity=0.156  Sum_probs=70.1

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..+...++|.--|.|..+..++..++..++++++|.||++++.|++.+...+  +++.++++...+....+...  ..++
T Consensus        21 ~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~--~i~~   96 (314)
T COG0275          21 PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKEL--GIGK   96 (314)
T ss_pred             cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhc--CCCc
Confidence            4455699999999999999999999877899999999999999999887755  68999999876654444322  2468


Q ss_pred             eeEEEEeCCc
Q 029764           98 FDYAFVDADK  107 (188)
Q Consensus        98 ~D~i~id~~~  107 (188)
                      +|-|++|...
T Consensus        97 vDGiL~DLGV  106 (314)
T COG0275          97 VDGILLDLGV  106 (314)
T ss_pred             eeEEEEeccC
Confidence            9999998543

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.08  E-value=2.1e-05  Score=58.10  Aligned_cols=121  Identities=14%  Similarity=0.158  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029764            8 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   87 (188)
Q Consensus         8 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   87 (188)
                      ...++.++....+...|.|+|||.+..+..+    +..-+|.+.|+-+.                +-.++..|....  .
T Consensus        60 vd~iI~~l~~~~~~~viaD~GCGdA~la~~~----~~~~~V~SfDLva~----------------n~~Vtacdia~v--P  117 (219)
T PF05148_consen   60 VDVIIEWLKKRPKSLVIADFGCGDAKLAKAV----PNKHKVHSFDLVAP----------------NPRVTACDIANV--P  117 (219)
T ss_dssp             HHHHHHHHCTS-TTS-EEEES-TT-HHHHH------S---EEEEESS-S----------------STTEEES-TTS---S
T ss_pred             HHHHHHHHHhcCCCEEEEECCCchHHHHHhc----ccCceEEEeeccCC----------------CCCEEEecCccC--c
Confidence            4556677766655679999999999887544    32457999998532                113556776443  1


Q ss_pred             HhhcccCCCceeEEEEeC--CccchHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHHHHhh
Q 029764           88 LLKYSENEGSFDYAFVDA--DKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLA  165 (188)
Q Consensus        88 ~~~~~~~~~~~D~i~id~--~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (188)
                      +     +.++.|+++...  --.++..++.++.|.||+||.+.+.++..+                  ....+.|.+.+.
T Consensus       118 L-----~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SR------------------f~~~~~F~~~~~  174 (219)
T PF05148_consen  118 L-----EDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSR------------------FENVKQFIKALK  174 (219)
T ss_dssp             -------TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-------------------S-HHHHHHHHH
T ss_pred             C-----CCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEeccc------------------CcCHHHHHHHHH
Confidence            2     258999998764  346788999999999999999999876631                  112788888876


Q ss_pred             cCCCeEEEE
Q 029764          166 DDPRVQLSH  174 (188)
Q Consensus       166 ~~~~~~~~~  174 (188)
                      .- +|....
T Consensus       175 ~~-GF~~~~  182 (219)
T PF05148_consen  175 KL-GFKLKS  182 (219)
T ss_dssp             CT-TEEEEE
T ss_pred             HC-CCeEEe
Confidence            54 565544

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.08  E-value=6.4e-05  Score=59.83  Aligned_cols=104  Identities=15%  Similarity=0.197  Sum_probs=85.7

Q ss_pred             CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029764           21 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  100 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~  100 (188)
                      +.+|+|.-+|+|--++.+|...+ ..+++.=|++|++.+.+++|+..+... +...++.|+...+.+.      ...||+
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~-~~~v~lNDisp~Avelik~Nv~~N~~~-~~~v~n~DAN~lm~~~------~~~fd~  124 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETG-VVKVVLNDISPKAVELIKENVRLNSGE-DAEVINKDANALLHEL------HRAFDV  124 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcC-ccEEEEccCCHHHHHHHHHHHHhcCcc-cceeecchHHHHHHhc------CCCccE
Confidence            78999999999999999999876 338999999999999999999887333 4666778998777654      478999


Q ss_pred             EEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764          101 AFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus       101 i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      |=+|. ...+.+|++.+.+.++.||++.+..+-
T Consensus       125 IDiDP-FGSPaPFlDaA~~s~~~~G~l~vTATD  156 (380)
T COG1867         125 IDIDP-FGSPAPFLDAALRSVRRGGLLCVTATD  156 (380)
T ss_pred             EecCC-CCCCchHHHHHHHHhhcCCEEEEEecc
Confidence            98884 334578999999999999999985443

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.08  E-value=9.2e-05  Score=58.73  Aligned_cols=110  Identities=12%  Similarity=0.049  Sum_probs=75.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCC---CCEEEEEeCCchhHHHHHHHHHhcCCCC-cEEEEEcchHHHHHHHhhcccC
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPE---DGQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      .++..++|+|||+|.=+..++.++.+   ..+++++|++.+.+..+.+.+....++. .+.-+++|..+.+.-+... ..
T Consensus        75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~-~~  153 (319)
T TIGR03439        75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRP-EN  153 (319)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccc-cc
Confidence            34458999999999988887776642   3679999999999999999887333332 2444788876654333210 00


Q ss_pred             CCceeEEEEeC------CccchHHHHHHHHh-ccCcCeEEEE
Q 029764           95 EGSFDYAFVDA------DKDNYCNYHERLMK-LLKVGGIAVY  129 (188)
Q Consensus        95 ~~~~D~i~id~------~~~~~~~~~~~~~~-~L~~gG~lv~  129 (188)
                      .....+++.-+      .+.....++..+.+ .|+||+.+++
T Consensus       154 ~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi  195 (319)
T TIGR03439       154 RSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI  195 (319)
T ss_pred             cCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence            12345665432      23445678889988 9999998887

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=98.07  E-value=1.8e-05  Score=61.88  Aligned_cols=81  Identities=12%  Similarity=0.297  Sum_probs=50.0

Q ss_pred             CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc-CCCCcEEEEEcchH-HHHHHHhhcccCCCcee
Q 029764           22 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-GVDHKINFIESEAL-SVLDQLLKYSENEGSFD   99 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~D   99 (188)
                      .++||||||...+=-.|+.... +-++++.|+++..++.|+++++.+ ++.++++++..... .++..+..   ..+.||
T Consensus       104 v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~---~~e~~d  179 (299)
T PF05971_consen  104 VRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQ---PNERFD  179 (299)
T ss_dssp             -EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT-----S-EE
T ss_pred             eEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhc---ccceee
Confidence            4799999987765333333333 789999999999999999999999 89999998765432 23333221   246899


Q ss_pred             EEEEeCC
Q 029764          100 YAFVDAD  106 (188)
Q Consensus       100 ~i~id~~  106 (188)
                      +.++..+
T Consensus       180 ftmCNPP  186 (299)
T PF05971_consen  180 FTMCNPP  186 (299)
T ss_dssp             EEEE---
T ss_pred             EEecCCc
Confidence            9998753

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.00  E-value=0.00014  Score=53.34  Aligned_cols=112  Identities=21%  Similarity=0.266  Sum_probs=81.3

Q ss_pred             HHHHHHHHHH------HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch
Q 029764            8 AGQLMAMLLR------LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   81 (188)
Q Consensus         8 ~~~~l~~l~~------~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   81 (188)
                      ..++-+.++.      +.++.+||=+|..+|.....++.-.+ .+.+++||.++......-..+++-   +|+-.+.+|+
T Consensus        58 RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA  133 (231)
T COG1889          58 RSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDA  133 (231)
T ss_pred             hhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhC---CCceeeeccc
Confidence            3445555443      45677999999999999999988877 899999999998776666555442   4677788887


Q ss_pred             HH--HHHHHhhcccCCCceeEEEEeCCccchH-HHHHHHHhccCcCeEEEE
Q 029764           82 LS--VLDQLLKYSENEGSFDYAFVDADKDNYC-NYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        82 ~~--~~~~~~~~~~~~~~~D~i~id~~~~~~~-~~~~~~~~~L~~gG~lv~  129 (188)
                      ..  ....+      -+..|+||.|-..++.. -+..++...|++||.+++
T Consensus       134 ~~P~~Y~~~------Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i  178 (231)
T COG1889         134 RKPEKYRHL------VEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVI  178 (231)
T ss_pred             CCcHHhhhh------cccccEEEEecCCchHHHHHHHHHHHhcccCCeEEE
Confidence            53  22222      36799999997655544 455777889999996555

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.99  E-value=4.6e-05  Score=59.87  Aligned_cols=94  Identities=17%  Similarity=0.168  Sum_probs=62.7

Q ss_pred             HHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029764           10 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   89 (188)
Q Consensus        10 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   89 (188)
                      +.+..|. ..++..++|.-.|.|+-+..+++.++ +++++++|.||++++.+++.+...  .+++.+++++..++...+.
T Consensus        11 Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~-~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~   86 (310)
T PF01795_consen   11 EVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLP-NGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLK   86 (310)
T ss_dssp             HHHHHHT---TT-EEEETT-TTSHHHHHHHHT-T-T-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHH
T ss_pred             HHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCC-CCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHH
Confidence            3444333 55667999999999999999999998 599999999999999999877643  5789999988766544333


Q ss_pred             hcccCCCceeEEEEeCCcc
Q 029764           90 KYSENEGSFDYAFVDADKD  108 (188)
Q Consensus        90 ~~~~~~~~~D~i~id~~~~  108 (188)
                      .. ....++|.|++|...+
T Consensus        87 ~~-~~~~~~dgiL~DLGvS  104 (310)
T PF01795_consen   87 EL-NGINKVDGILFDLGVS  104 (310)
T ss_dssp             HT-TTTS-EEEEEEE-S--
T ss_pred             Hc-cCCCccCEEEEccccC
Confidence            21 1246899999996543

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.98  E-value=7.7e-06  Score=67.35  Aligned_cols=99  Identities=12%  Similarity=0.037  Sum_probs=58.0

Q ss_pred             CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHh-cCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029764           22 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK-AGVDHKINFIESEALSVLDQLLKYSENEGSFDY  100 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~  100 (188)
                      ..+||+|||+|+.+.+|...   +..++++-.  .--..++..++. -|++.-+..+   +.+.++-.      .+.||+
T Consensus       119 R~~LDvGcG~aSF~a~l~~r---~V~t~s~a~--~d~~~~qvqfaleRGvpa~~~~~---~s~rLPfp------~~~fDm  184 (506)
T PF03141_consen  119 RTALDVGCGVASFGAYLLER---NVTTMSFAP--NDEHEAQVQFALERGVPAMIGVL---GSQRLPFP------SNAFDM  184 (506)
T ss_pred             EEEEeccceeehhHHHHhhC---CceEEEccc--ccCCchhhhhhhhcCcchhhhhh---ccccccCC------ccchhh
Confidence            47999999999999999874   434444333  222222222221 2443222211   12333332      578999


Q ss_pred             EEEeC----CccchHHHHHHHHhccCcCeEEEEecccc
Q 029764          101 AFVDA----DKDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus       101 i~id~----~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      |.+..    +.....-++-++-++|+|||+++.+....
T Consensus       185 vHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv  222 (506)
T PF03141_consen  185 VHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPV  222 (506)
T ss_pred             hhcccccccchhcccceeehhhhhhccCceEEecCCcc
Confidence            97652    22222345667779999999999876654

; GO: 0008168 methyltransferase activity

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=97.93  E-value=4.2e-05  Score=56.04  Aligned_cols=104  Identities=18%  Similarity=0.226  Sum_probs=76.9

Q ss_pred             CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCC------CCcEEEEEcchHHHHHHHhhcccC
Q 029764           21 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV------DHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      ...+.|||||.|...+.++-.+| +.-+.+.|+.-...+..++.+..+..      -.++.+...++..+++.+...   
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fP-dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~k---  136 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFP-DTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEK---  136 (249)
T ss_pred             cceEEeeccCccchhhhccccCc-cceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhh---
Confidence            34799999999999999999998 88999999999888888888877642      246788899999888887643   


Q ss_pred             CCceeEEEE---eCCcc--------chHHHHHHHHhccCcCeEEEE
Q 029764           95 EGSFDYAFV---DADKD--------NYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        95 ~~~~D~i~i---d~~~~--------~~~~~~~~~~~~L~~gG~lv~  129 (188)
                       ++.+-.|+   |.+..        ....++.+..=+|++||.+..
T Consensus       137 -gqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yt  181 (249)
T KOG3115|consen  137 -GQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYT  181 (249)
T ss_pred             -cccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEE
Confidence             44443332   21110        012456666679999998765

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.92  E-value=3.5e-05  Score=56.17  Aligned_cols=97  Identities=18%  Similarity=0.206  Sum_probs=69.9

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..++++|||.|+|+|-.++..++.-  ...++..|++|-....++-|.+.++.  .+.+...|...          +...
T Consensus        77 tVrgkrVLd~gagsgLvaIAaa~aG--A~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g----------~~~~  142 (218)
T COG3897          77 TVRGKRVLDLGAGSGLVAIAAARAG--AAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG----------SPPA  142 (218)
T ss_pred             ccccceeeecccccChHHHHHHHhh--hHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC----------CCcc
Confidence            4567899999999999998888763  36899999999888888888888774  47777777643          1478


Q ss_pred             eeEEEEeC---CccchHHHHHHHHhccCcCeEEEE
Q 029764           98 FDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        98 ~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      +|+++...   ++.....++. +...|+..|..|+
T Consensus       143 ~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vl  176 (218)
T COG3897         143 FDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVL  176 (218)
T ss_pred             eeEEEeeceecCchHHHHHHH-HHHHHHhCCCEEE
Confidence            99998752   3444445555 4455555554333

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.90  E-value=0.00015  Score=51.41  Aligned_cols=107  Identities=17%  Similarity=0.160  Sum_probs=67.9

Q ss_pred             HcCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCC--CcEEEEEcchHHHHHHHhhcccC
Q 029764           18 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD--HKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        18 ~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      ..++++|+|+|.|. |-.++.+|...+ ...|...|-+.+.++..++....+-.+  .++....-+.-..  +...   .
T Consensus        27 ~~rg~~ilelgggft~laglmia~~a~-~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~a--qsq~---e  100 (201)
T KOG3201|consen   27 KIRGRRILELGGGFTGLAGLMIACKAP-DSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGA--QSQQ---E  100 (201)
T ss_pred             HHhHHHHHHhcCchhhhhhhheeeecC-CceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhh--HHHH---h
Confidence            44567899999985 446666666655 789999999999999888875443211  1121111111111  1111   1


Q ss_pred             CCceeEEEEeC---CccchHHHHHHHHhccCcCeEEEEe
Q 029764           95 EGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        95 ~~~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ..+||+|++..   -.+....+.+.++.+|+|.|.-++-
T Consensus       101 q~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~f  139 (201)
T KOG3201|consen  101 QHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLF  139 (201)
T ss_pred             hCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEe
Confidence            36899998642   1244567788899999999986653

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.86  E-value=0.00016  Score=57.50  Aligned_cols=87  Identities=11%  Similarity=0.156  Sum_probs=62.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++.++||+||++|.++..+++.   +.+|++||..+ +.    ..+..   .+++..+.+|.....+.       .+.+
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~-l~----~~L~~---~~~V~h~~~d~fr~~p~-------~~~v  271 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGP-MA----QSLMD---TGQVEHLRADGFKFRPP-------RKNV  271 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechh-cC----HhhhC---CCCEEEEeccCcccCCC-------CCCC
Confidence            46779999999999999999986   67999999654 21    12222   35799999988766442       3689


Q ss_pred             eEEEEeCCccchHHHHHHHHhccCcC
Q 029764           99 DYAFVDADKDNYCNYHERLMKLLKVG  124 (188)
Q Consensus        99 D~i~id~~~~~~~~~~~~~~~~L~~g  124 (188)
                      |++++|... .+....+.+.+.|..|
T Consensus       272 DwvVcDmve-~P~rva~lm~~Wl~~g  296 (357)
T PRK11760        272 DWLVCDMVE-KPARVAELMAQWLVNG  296 (357)
T ss_pred             CEEEEeccc-CHHHHHHHHHHHHhcC
Confidence            999999643 3345556666666666

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.77  E-value=2.9e-05  Score=63.76  Aligned_cols=117  Identities=20%  Similarity=0.158  Sum_probs=94.8

Q ss_pred             HHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcc
Q 029764           13 AMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS   92 (188)
Q Consensus        13 ~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~   92 (188)
                      ....+..++.+|||.-|++|.-++..|..++...++++-|.++..++..++|++.++..+.++..++|+.-..-...+  
T Consensus       102 ~~~~~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~--  179 (525)
T KOG1253|consen  102 ALLKREEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPM--  179 (525)
T ss_pred             chhhhccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccc--
Confidence            344566777899999999999999999999856789999999999999999999988888888889998765433211  


Q ss_pred             cCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           93 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        93 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                       -...||+|=+|..- ....|++.+.+.++.||+|++..+-
T Consensus       180 -~~~~FDvIDLDPyG-s~s~FLDsAvqav~~gGLL~vT~TD  218 (525)
T KOG1253|consen  180 -VAKFFDVIDLDPYG-SPSPFLDSAVQAVRDGGLLCVTCTD  218 (525)
T ss_pred             -cccccceEecCCCC-CccHHHHHHHHHhhcCCEEEEEecc
Confidence             12679999998532 3467899999999999999986544

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=97.74  E-value=7.2e-05  Score=61.53  Aligned_cols=112  Identities=17%  Similarity=0.191  Sum_probs=83.8

Q ss_pred             CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029764           21 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  100 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~  100 (188)
                      +..+|-+|-|+|....++-.+++ ..++++|+++|++++.|++++.-..- .+......|..+++.+......+...||+
T Consensus       296 ~~~~lvvg~ggG~l~sfl~~~~p-~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~dv  373 (482)
T KOG2352|consen  296 GGKQLVVGLGGGGLPSFLHMSLP-KFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPDV  373 (482)
T ss_pred             cCcEEEEecCCCccccceeeecC-ccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCcE
Confidence            34688888888999999888887 78999999999999999999865432 24566678888887776653234568999


Q ss_pred             EEEeCCccc------------hHHHHHHHHhccCcCeEEEEecccc
Q 029764          101 AFVDADKDN------------YCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus       101 i~id~~~~~------------~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      +++|-+..+            ...++..+...|.|.|+++++-+..
T Consensus       374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r  419 (482)
T KOG2352|consen  374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTR  419 (482)
T ss_pred             EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecC
Confidence            999843211            1235556668999999999876554

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.72  E-value=0.0038  Score=47.27  Aligned_cols=98  Identities=23%  Similarity=0.279  Sum_probs=61.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      ..+++||=+|=.--.| +.+|.... ..+|+.+|+++..++..++..++.|++  ++.++.|..+-+|.-.     .++|
T Consensus        43 L~gk~il~lGDDDLtS-lA~al~~~-~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~-----~~~f  113 (243)
T PF01861_consen   43 LEGKRILFLGDDDLTS-LALALTGL-PKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEEL-----RGKF  113 (243)
T ss_dssp             STT-EEEEES-TT-HH-HHHHHHT---SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTT-----SS-B
T ss_pred             ccCCEEEEEcCCcHHH-HHHHhhCC-CCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHH-----hcCC
Confidence            3678999999654443 44443333 469999999999999999999999975  8999999988777532     5899


Q ss_pred             eEEEEeCCc--cchHHHHHHHHhccCcCe
Q 029764           99 DYAFVDADK--DNYCNYHERLMKLLKVGG  125 (188)
Q Consensus        99 D~i~id~~~--~~~~~~~~~~~~~L~~gG  125 (188)
                      |++|.|.+.  ....-|+.+..+.||.-|
T Consensus       114 D~f~TDPPyT~~G~~LFlsRgi~~Lk~~g  142 (243)
T PF01861_consen  114 DVFFTDPPYTPEGLKLFLSRGIEALKGEG  142 (243)
T ss_dssp             SEEEE---SSHHHHHHHHHHHHHTB-STT
T ss_pred             CEEEeCCCCCHHHHHHHHHHHHHHhCCCC
Confidence            999999743  445678888888888776

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.68  E-value=0.00048  Score=52.98  Aligned_cols=118  Identities=10%  Similarity=0.105  Sum_probs=67.7

Q ss_pred             HHHcCCCEEEEEcccch--HHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh---h
Q 029764           16 LRLVNAKKTIEIGVFTG--YSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL---K   90 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g~G--~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~   90 (188)
                      +....-...||||||.-  .++-.+|+...++++|+-+|.+|-.+..++..+....- ....++.+|..+.-.-+.   .
T Consensus        64 a~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~  142 (267)
T PF04672_consen   64 AEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEV  142 (267)
T ss_dssp             HCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHH
T ss_pred             HHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHH
Confidence            33335568999999944  36667777776799999999999999999998876541 247899998765322111   0


Q ss_pred             cc-cC-CCceeEEEEe-----CCccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           91 YS-EN-EGSFDYAFVD-----ADKDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        91 ~~-~~-~~~~D~i~id-----~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      .. .+ ....=++++.     .+..+....+..+...|.||++|+++....
T Consensus       143 ~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~  193 (267)
T PF04672_consen  143 RGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATD  193 (267)
T ss_dssp             HCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred             HhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence            00 11 2233333332     133567789999999999999999976553

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=97.66  E-value=0.00062  Score=59.45  Aligned_cols=103  Identities=21%  Similarity=0.206  Sum_probs=69.6

Q ss_pred             CCEEEEEcccchHHHHHHHhhC-------CC----CCEEEEEeCCchh---H-----------HHHHHHHHhc-----CC
Q 029764           21 AKKTIEIGVFTGYSLLLTALTI-------PE----DGQITAIDVNRET---Y-----------EIGLPIIKKA-----GV   70 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~-------~~----~~~v~~iD~~~~~---~-----------~~a~~~~~~~-----~~   70 (188)
                      .-+|+|+|-|+|.+.+...+.+       ++    ..+++++|..|-.   +           ..+++..+..     |+
T Consensus        58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~  137 (662)
T PRK01747         58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC  137 (662)
T ss_pred             cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence            3589999999999877766544       11    2489999975522   2           2222222221     21


Q ss_pred             ------CC--cEEEEEcchHHHHHHHhhcccCCCceeEEEEeCC--ccc----hHHHHHHHHhccCcCeEEEE
Q 029764           71 ------DH--KINFIESEALSVLDQLLKYSENEGSFDYAFVDAD--KDN----YCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        71 ------~~--~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~--~~~----~~~~~~~~~~~L~~gG~lv~  129 (188)
                            .+  .++++.+|+.+.++++      ...+|++|.|+-  ..+    ..+++..+.+++++||.+..
T Consensus       138 ~~~~~~~~~~~l~l~~gd~~~~~~~~------~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t  204 (662)
T PRK01747        138 HRLLFDDGRVTLDLWFGDANELLPQL------DARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT  204 (662)
T ss_pred             eEEEecCCcEEEEEEecCHHHHHHhc------cccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence                  11  3457789999988876      356999999962  222    35789999999999999985

>PHA01634 hypothetical protein

Probab=97.64  E-value=0.0003  Score=47.78  Aligned_cols=74  Identities=14%  Similarity=0.036  Sum_probs=55.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++++|+|||.+.|.++++++..-  ..+|+++|.++...+..+++++.+..-++..-. ++.    +.      .-+.|
T Consensus        27 vk~KtV~dIGA~iGdSaiYF~l~G--AK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~-~eW----~~------~Y~~~   93 (156)
T PHA01634         27 VYQRTIQIVGADCGSSALYFLLRG--ASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMK-GEW----NG------EYEDV   93 (156)
T ss_pred             ecCCEEEEecCCccchhhHHhhcC--ccEEEEeccCHHHHHHHHHHhhhheeeeceeec-ccc----cc------cCCCc
Confidence            467899999999999999998763  468999999999999999988766544333221 111    11      13789


Q ss_pred             eEEEEeC
Q 029764           99 DYAFVDA  105 (188)
Q Consensus        99 D~i~id~  105 (188)
                      |+..+|+
T Consensus        94 Di~~iDC  100 (156)
T PHA01634         94 DIFVMDC  100 (156)
T ss_pred             ceEEEEc
Confidence            9999996

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.64  E-value=0.00064  Score=51.19  Aligned_cols=99  Identities=20%  Similarity=0.155  Sum_probs=70.6

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE-cchHHHHHHHhhcccCCC
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENEG   96 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~   96 (188)
                      ..+++.+||||+.+|..+..+.+.-  ..+|+++|.....+.--   ++   ..+++..+. .++....+.-.     .+
T Consensus        77 ~~k~kv~LDiGsSTGGFTd~lLq~g--Ak~VyavDVG~~Ql~~k---LR---~d~rV~~~E~tN~r~l~~~~~-----~~  143 (245)
T COG1189          77 DVKGKVVLDIGSSTGGFTDVLLQRG--AKHVYAVDVGYGQLHWK---LR---NDPRVIVLERTNVRYLTPEDF-----TE  143 (245)
T ss_pred             CCCCCEEEEecCCCccHHHHHHHcC--CcEEEEEEccCCccCHh---Hh---cCCcEEEEecCChhhCCHHHc-----cc
Confidence            4577899999999999999988862  46999999876544311   11   124554443 45544322211     34


Q ss_pred             ceeEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764           97 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        97 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      ..|++++|...-.....+..+..++++++.++.
T Consensus       144 ~~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~  176 (245)
T COG1189         144 KPDLIVIDVSFISLKLILPALLLLLKDGGDLVL  176 (245)
T ss_pred             CCCeEEEEeehhhHHHHHHHHHHhcCCCceEEE
Confidence            789999998887888889999999999987765

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.63  E-value=0.0008  Score=46.45  Aligned_cols=105  Identities=20%  Similarity=0.211  Sum_probs=66.5

Q ss_pred             EEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC-CceeEEE
Q 029764           24 TIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE-GSFDYAF  102 (188)
Q Consensus        24 vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~D~i~  102 (188)
                      ++|+|||.|..+ .++...+....++++|.++.++..++..... .....+.+...+.......+     .. ..||++.
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~d~~~  124 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPF-----EDSASFDLVI  124 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCC-----CCCCceeEEe
Confidence            999999999977 4443322124889999999988885544332 21111567777665421111     12 3799993


Q ss_pred             EeCCc--cchHHHHHHHHhccCcCeEEEEeccccC
Q 029764          103 VDADK--DNYCNYHERLMKLLKVGGIAVYDNTLWG  135 (188)
Q Consensus       103 id~~~--~~~~~~~~~~~~~L~~gG~lv~~~~~~~  135 (188)
                      .....  ......+..+.+.++++|.+++......
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~  159 (257)
T COG0500         125 SLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRD  159 (257)
T ss_pred             eeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence            33211  1146788899999999999988766543

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=97.60  E-value=8.7e-05  Score=55.53  Aligned_cols=97  Identities=12%  Similarity=0.118  Sum_probs=72.4

Q ss_pred             CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029764           22 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  101 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i  101 (188)
                      +.++||||+.|.....+...-  -.+++.+|.+..+++.++.. ++.++  ....+.+|- ++++ +     ...++|+|
T Consensus        74 p~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~-qdp~i--~~~~~v~DE-E~Ld-f-----~ens~DLi  141 (325)
T KOG2940|consen   74 PTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDA-QDPSI--ETSYFVGDE-EFLD-F-----KENSVDLI  141 (325)
T ss_pred             cceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhcc-CCCce--EEEEEecch-hccc-c-----cccchhhh
Confidence            479999999999988876542  36899999999999988764 22232  245566765 3333 2     36899999


Q ss_pred             EEe---CCccchHHHHHHHHhccCcCeEEEEe
Q 029764          102 FVD---ADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus       102 ~id---~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      +..   ++..+.+..+.+|...|||+|.++..
T Consensus       142 isSlslHW~NdLPg~m~~ck~~lKPDg~Fias  173 (325)
T KOG2940|consen  142 ISSLSLHWTNDLPGSMIQCKLALKPDGLFIAS  173 (325)
T ss_pred             hhhhhhhhhccCchHHHHHHHhcCCCccchhH
Confidence            865   35567788899999999999998763

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.57  E-value=0.00089  Score=51.80  Aligned_cols=120  Identities=21%  Similarity=0.210  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHcC-------CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCC-----------
Q 029764            9 GQLMAMLLRLVN-------AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV-----------   70 (188)
Q Consensus         9 ~~~l~~l~~~~~-------~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~-----------   70 (188)
                      .-++..|....+       +.+||--|||.|+.+..+|..   +-.+.+.|.|--|+-..+-.+....-           
T Consensus        38 ~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~  114 (270)
T PF07942_consen   38 SPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVH  114 (270)
T ss_pred             HHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHcccCCCCcEEEeccee
Confidence            344555555444       368999999999999999986   67899999987775444332221000           


Q ss_pred             ----------------------------CCcEEEEEcchHHHHHHHhhcccCCCceeEE----EEeCCccchHHHHHHHH
Q 029764           71 ----------------------------DHKINFIESEALSVLDQLLKYSENEGSFDYA----FVDADKDNYCNYHERLM  118 (188)
Q Consensus        71 ----------------------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i----~id~~~~~~~~~~~~~~  118 (188)
                                                  ..++.+..||..+....-    ...++||.|    |+|- ..+..++++.+.
T Consensus       115 ~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~----~~~~~~d~VvT~FFIDT-A~Ni~~Yi~tI~  189 (270)
T PF07942_consen  115 SFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPD----ENKGSFDVVVTCFFIDT-AENIIEYIETIE  189 (270)
T ss_pred             cccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCc----ccCCcccEEEEEEEeec-hHHHHHHHHHHH
Confidence                                        112333344443332110    013689988    4553 457889999999


Q ss_pred             hccCcCeEEEEeccccCc
Q 029764          119 KLLKVGGIAVYDNTLWGG  136 (188)
Q Consensus       119 ~~L~~gG~lv~~~~~~~g  136 (188)
                      .+|||||+-|=-.++..+
T Consensus       190 ~lLkpgG~WIN~GPLlyh  207 (270)
T PF07942_consen  190 HLLKPGGYWINFGPLLYH  207 (270)
T ss_pred             HHhccCCEEEecCCcccc
Confidence            999999966554555433

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=97.56  E-value=0.00013  Score=58.78  Aligned_cols=107  Identities=18%  Similarity=0.211  Sum_probs=81.8

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..++..++++|||.|.....++..-  .+.+++++.++-.+..+.......++.++..+..++..+..       +++.+
T Consensus       108 ~~~~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~-------fedn~  178 (364)
T KOG1269|consen  108 CFPGSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMP-------FEDNT  178 (364)
T ss_pred             CcccccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCC-------CCccc
Confidence            4455579999999999999988752  67899999999888888887777777766666555554321       13578


Q ss_pred             eeEEEE-e--CCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           98 FDYAFV-D--ADKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        98 ~D~i~i-d--~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      ||.+.+ +  .+.+.....++++.+.++|||+.+..+..
T Consensus       179 fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i  217 (364)
T KOG1269|consen  179 FDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWI  217 (364)
T ss_pred             cCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHH
Confidence            999854 4  35567788999999999999999986544

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=97.50  E-value=0.0014  Score=47.73  Aligned_cols=104  Identities=15%  Similarity=0.240  Sum_probs=66.0

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc-chHH--HHHHHhhcccC
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALS--VLDQLLKYSEN   94 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~--~~~~~~~~~~~   94 (188)
                      ..+..+|||+|+..|.++.-.-+...+++.|.+||+-+=         .  +. ..++++.+ |..+  ....+... ..
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~---------~--p~-~Ga~~i~~~dvtdp~~~~ki~e~-lp  133 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI---------E--PP-EGATIIQGNDVTDPETYRKIFEA-LP  133 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec---------c--CC-CCcccccccccCCHHHHHHHHHh-CC
Confidence            456789999999999999988888866899999998421         1  11 22455555 3322  11111111 12


Q ss_pred             CCceeEEEEeCCc-------cchHHHHHHH-------HhccCcCeEEEEeccccCc
Q 029764           95 EGSFDYAFVDADK-------DNYCNYHERL-------MKLLKVGGIAVYDNTLWGG  136 (188)
Q Consensus        95 ~~~~D~i~id~~~-------~~~~~~~~~~-------~~~L~~gG~lv~~~~~~~g  136 (188)
                      ....|+|+.|-.+       .+....++.|       ...++|+|.+++.  +|.|
T Consensus       134 ~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK--~w~g  187 (232)
T KOG4589|consen  134 NRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK--LWDG  187 (232)
T ss_pred             CCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE--EecC
Confidence            4689999998422       1222333333       4688999999996  6655

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=97.47  E-value=0.00052  Score=52.32  Aligned_cols=97  Identities=15%  Similarity=0.174  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029764            8 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   87 (188)
Q Consensus         8 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   87 (188)
                      ...++.++-.......|.|+|||-+..+.    .  ..-.|.+.|+-+                .+-.++.+|..++ | 
T Consensus       168 ld~ii~~ik~r~~~~vIaD~GCGEakiA~----~--~~~kV~SfDL~a----------------~~~~V~~cDm~~v-P-  223 (325)
T KOG3045|consen  168 LDVIIRKIKRRPKNIVIADFGCGEAKIAS----S--ERHKVHSFDLVA----------------VNERVIACDMRNV-P-  223 (325)
T ss_pred             HHHHHHHHHhCcCceEEEecccchhhhhh----c--cccceeeeeeec----------------CCCceeeccccCC-c-
Confidence            34566666666566689999999988755    2  134799999842                1235667776553 1 


Q ss_pred             HhhcccCCCceeEEEEeC--CccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           88 LLKYSENEGSFDYAFVDA--DKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        88 ~~~~~~~~~~~D~i~id~--~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      +     ++++.|+++...  --.+...++.++.+.|++||.+.+.++-
T Consensus       224 l-----~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~  266 (325)
T KOG3045|consen  224 L-----EDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVK  266 (325)
T ss_pred             C-----ccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehh
Confidence            1     258999988764  3467889999999999999999987655

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=97.35  E-value=0.00034  Score=52.89  Aligned_cols=74  Identities=20%  Similarity=0.272  Sum_probs=48.5

Q ss_pred             EEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc---C-C----CCcEEEEEcchHHHHHHHhhcccC
Q 029764           23 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA---G-V----DHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        23 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~---~-~----~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      +|||+-+|-|.-++.+|..   +++|+++|-+|-.....+.-++..   . .    ..+++++++|+.+++...      
T Consensus        78 ~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~------  148 (234)
T PF04445_consen   78 SVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQP------  148 (234)
T ss_dssp             -EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCH------
T ss_pred             EEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhc------
Confidence            8999999999999998864   679999999998776666544332   1 1    147999999999887621      


Q ss_pred             CCceeEEEEeC
Q 029764           95 EGSFDYAFVDA  105 (188)
Q Consensus        95 ~~~~D~i~id~  105 (188)
                      ..+||+|++|.
T Consensus       149 ~~s~DVVY~DP  159 (234)
T PF04445_consen  149 DNSFDVVYFDP  159 (234)
T ss_dssp             SS--SEEEE--
T ss_pred             CCCCCEEEECC
Confidence            57999999995

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=97.33  E-value=0.0014  Score=55.11  Aligned_cols=131  Identities=21%  Similarity=0.296  Sum_probs=90.2

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCC---CCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcc
Q 029764            4 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE---DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   80 (188)
Q Consensus         4 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d   80 (188)
                      |+++..++|..++...+..+|+|..||+|+.....+..+..   ...+++.|.++..+..++.|+--.+....+...++|
T Consensus       170 TP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~d  249 (489)
T COG0286         170 TPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGD  249 (489)
T ss_pred             ChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccc
Confidence            67888899998888766779999999999877776665532   367999999999999999998877765445666666


Q ss_pred             hHHHHHHHhhcccCCCceeEEEEeCCc----------------------------cchHHHHHHHHhccCcCe---EEEE
Q 029764           81 ALSVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGG---IAVY  129 (188)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~D~i~id~~~----------------------------~~~~~~~~~~~~~L~~gG---~lv~  129 (188)
                      ........ +. .+...||+|+...+.                            .....++..+...|+|||   +++.
T Consensus       250 tl~~~~~~-~~-~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~  327 (489)
T COG0286         250 TLSNPKHD-DK-DDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLP  327 (489)
T ss_pred             cccCCccc-cc-CCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEec
Confidence            54321110 00 124678988654211                            112567888899999865   4555


Q ss_pred             eccccCc
Q 029764          130 DNTLWGG  136 (188)
Q Consensus       130 ~~~~~~g  136 (188)
                      ++++..|
T Consensus       328 ~gvlfr~  334 (489)
T COG0286         328 DGVLFRG  334 (489)
T ss_pred             CCcCcCC
Confidence            6666544

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.22  E-value=0.0043  Score=49.50  Aligned_cols=98  Identities=19%  Similarity=0.175  Sum_probs=69.8

Q ss_pred             HHcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764           17 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        17 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      ...++++|+-+|.| .|..++.+|+.+  +.+|+++|.+++..+.|++.    |.   -.++.....+.....      .
T Consensus       163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~--ga~Via~~~~~~K~e~a~~l----GA---d~~i~~~~~~~~~~~------~  227 (339)
T COG1064         163 NVKPGKWVAVVGAGGLGHMAVQYAKAM--GAEVIAITRSEEKLELAKKL----GA---DHVINSSDSDALEAV------K  227 (339)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHc--CCeEEEEeCChHHHHHHHHh----CC---cEEEEcCCchhhHHh------H
Confidence            46677888888877 456888899876  58999999999998888875    31   233343222333333      2


Q ss_pred             CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      +.+|+|+.-..    ...++...+.|++||.+++-...
T Consensus       228 ~~~d~ii~tv~----~~~~~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         228 EIADAIIDTVG----PATLEPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             hhCcEEEECCC----hhhHHHHHHHHhcCCEEEEECCC
Confidence            34999987643    45678888999999999986555

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.21  E-value=0.0059  Score=48.13  Aligned_cols=108  Identities=15%  Similarity=0.110  Sum_probs=72.4

Q ss_pred             HHHcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           16 LRLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      .....+.+||-+|+| .|..+...|+++. ..+|+.+|+.++.++.|++ +   |...-...-+.++.+.+.+..++...
T Consensus       165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~-~---Ga~~~~~~~~~~~~~~~~~~v~~~~g  239 (354)
T KOG0024|consen  165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKK-F---GATVTDPSSHKSSPQELAELVEKALG  239 (354)
T ss_pred             cCcccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHH-h---CCeEEeeccccccHHHHHHHHHhhcc
Confidence            346677899999999 5778888889886 7899999999999999998 4   43321111222223333333332122


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      ...+|+.|-..   .....++.....++.||.+++..
T Consensus       240 ~~~~d~~~dCs---G~~~~~~aai~a~r~gGt~vlvg  273 (354)
T KOG0024|consen  240 KKQPDVTFDCS---GAEVTIRAAIKATRSGGTVVLVG  273 (354)
T ss_pred             ccCCCeEEEcc---CchHHHHHHHHHhccCCEEEEec
Confidence            24588888543   33455677788999999987754

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=97.18  E-value=0.00074  Score=53.45  Aligned_cols=117  Identities=16%  Similarity=0.081  Sum_probs=86.2

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHH-------HHHHHHHhcCCCC-cEEE
Q 029764            5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYE-------IGLPIIKKAGVDH-KINF   76 (188)
Q Consensus         5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~-------~a~~~~~~~~~~~-~~~~   76 (188)
                      .++..-+++.++...+++.|.|-..|+|+..+..|.-   ++.|+|.|++-.++.       ..+.|+++.|.++ -+.+
T Consensus       193 DAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldv  269 (421)
T KOG2671|consen  193 DAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDV  269 (421)
T ss_pred             chhHHHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcchhhhe
Confidence            4677888899999999999999999999988887765   779999999877766       5678899988653 3566


Q ss_pred             EEcchHHHHHHHhhcccCCCceeEEEEeCCcc------------------------c------------hHHHHHHHHhc
Q 029764           77 IESEALSVLDQLLKYSENEGSFDYAFVDADKD------------------------N------------YCNYHERLMKL  120 (188)
Q Consensus        77 ~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~------------------------~------------~~~~~~~~~~~  120 (188)
                      ..+|...-  .+.    ....||.|++|.+..                        +            +-+.+....+.
T Consensus       270 l~~D~sn~--~~r----sn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~  343 (421)
T KOG2671|consen  270 LTADFSNP--PLR----SNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRR  343 (421)
T ss_pred             eeecccCc--chh----hcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhh
Confidence            77776432  221    136899999983110                        0            12345555689


Q ss_pred             cCcCeEEEEe
Q 029764          121 LKVGGIAVYD  130 (188)
Q Consensus       121 L~~gG~lv~~  130 (188)
                      |..||.+++-
T Consensus       344 L~~ggrlv~w  353 (421)
T KOG2671|consen  344 LVDGGRLVFW  353 (421)
T ss_pred             hhcCceEEEe
Confidence            9999999984

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.17  E-value=0.00036  Score=55.39  Aligned_cols=109  Identities=17%  Similarity=0.173  Sum_probs=67.9

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ...+++|||+|.|.|.....+-.-+|.-..++.+|.+|..-+..-...+.... .+.....+|...--..+.    ....
T Consensus       111 dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t-~~td~r~s~vt~dRl~lp----~ad~  185 (484)
T COG5459         111 DFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST-EKTDWRASDVTEDRLSLP----AADL  185 (484)
T ss_pred             CcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc-ccCCCCCCccchhccCCC----ccce
Confidence            34567999999999988777766677445678888887655555443333222 222233333322111221    1356


Q ss_pred             eeEEEEe------CCccchHHHHHHHHhccCcCeEEEEec
Q 029764           98 FDYAFVD------ADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        98 ~D~i~id------~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      |+++++-      .........++.+|.++.|||.+|+.+
T Consensus       186 ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivE  225 (484)
T COG5459         186 YTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVE  225 (484)
T ss_pred             eehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEe
Confidence            7877653      234445668999999999999999864

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=97.15  E-value=0.0028  Score=50.70  Aligned_cols=117  Identities=19%  Similarity=0.231  Sum_probs=78.9

Q ss_pred             HHHcCCCEEEEEcccchHHHHHHHhhCCC---CCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh--h
Q 029764           16 LRLVNAKKTIEIGVFTGYSLLLTALTIPE---DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL--K   90 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~   90 (188)
                      +...++.+|||.++..|+-++.+.+.+.+   .+.+++=|.++..+...+......+ +.+..+...++... +...  +
T Consensus       151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~-~~~~~v~~~~~~~~-p~~~~~~  228 (375)
T KOG2198|consen  151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP-SPNLLVTNHDASLF-PNIYLKD  228 (375)
T ss_pred             cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC-Ccceeeecccceec-ccccccc
Confidence            46778889999999999999988887642   3589999999998888877765544 23344444444322 1110  1


Q ss_pred             c-ccCCCceeEEEEeCCccc--------------------------hHHHHHHHHhccCcCeEEEEecccc
Q 029764           91 Y-SENEGSFDYAFVDADKDN--------------------------YCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        91 ~-~~~~~~~D~i~id~~~~~--------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      . +.....||-|++|.+.+.                          ...++.+..++||+||.+|.+....
T Consensus       229 ~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL  299 (375)
T KOG2198|consen  229 GNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL  299 (375)
T ss_pred             CchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence            0 012468999999832110                          1245667779999999999987665

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.14  E-value=0.0033  Score=44.02  Aligned_cols=106  Identities=15%  Similarity=0.093  Sum_probs=75.7

Q ss_pred             HHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           15 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        15 l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      ++..++....+|+|+|-|...+..++..  -..-+++|++|=....++-..-+.|+.....|...|...+  .       
T Consensus        67 ll~~n~~GklvDlGSGDGRiVlaaar~g--~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~--d-------  135 (199)
T KOG4058|consen   67 LLRGNPKGKLVDLGSGDGRIVLAAARCG--LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV--D-------  135 (199)
T ss_pred             HccCCCCCcEEeccCCCceeehhhhhhC--CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc--c-------
Confidence            3344555689999999999988888763  2467899999988888887777778887888888887654  1       


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      ...|..+.+-+..+-...+-+.+...+..|..++..-
T Consensus       136 l~dy~~vviFgaes~m~dLe~KL~~E~p~nt~vvacR  172 (199)
T KOG4058|consen  136 LRDYRNVVIFGAESVMPDLEDKLRTELPANTRVVACR  172 (199)
T ss_pred             ccccceEEEeehHHHHhhhHHHHHhhCcCCCeEEEEe
Confidence            2455555554444444455556666888888887753

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.11  E-value=0.0018  Score=49.24  Aligned_cols=75  Identities=16%  Similarity=0.062  Sum_probs=51.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++.+|+|||||.-=.++...... ++..++++|+++.+++.....+...+..  .++...|.....+        ....
T Consensus       104 ~~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~~--------~~~~  172 (251)
T PF07091_consen  104 PPPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDPP--------KEPA  172 (251)
T ss_dssp             ---SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSHT--------TSEE
T ss_pred             CCCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccCC--------CCCc
Confidence            447899999998777776655433 3679999999999999999999888754  5555666544322        4679


Q ss_pred             eEEEEe
Q 029764           99 DYAFVD  104 (188)
Q Consensus        99 D~i~id  104 (188)
                      |+.++=
T Consensus       173 DlaLll  178 (251)
T PF07091_consen  173 DLALLL  178 (251)
T ss_dssp             SEEEEE
T ss_pred             chhhHH
Confidence            999874

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=97.04  E-value=0.0039  Score=47.19  Aligned_cols=118  Identities=19%  Similarity=0.188  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHH------HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc
Q 029764            6 PDAGQLMAMLL------RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   79 (188)
Q Consensus         6 ~~~~~~l~~l~------~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~   79 (188)
                      |-..+|.+.++      ++.++..||=+|.++|.+...+.....+++-|+++|.++..=...-....   --.|+-.+..
T Consensus       136 PfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAk---kRtNiiPIiE  212 (317)
T KOG1596|consen  136 PFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAK---KRTNIIPIIE  212 (317)
T ss_pred             hHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhh---ccCCceeeec
Confidence            34445555443      46788899999999999988888777678999999998754333322222   1245777888


Q ss_pred             chHHHHHHHhhcccCCCceeEEEEeCCccchHHHH-HHHHhccCcCeEEEEe
Q 029764           80 EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYH-ERLMKLLKVGGIAVYD  130 (188)
Q Consensus        80 d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~-~~~~~~L~~gG~lv~~  130 (188)
                      |+..-....-    .-+-.|+||.|..+++....+ -++.-.||+||-+++.
T Consensus       213 DArhP~KYRm----lVgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvis  260 (317)
T KOG1596|consen  213 DARHPAKYRM----LVGMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVIS  260 (317)
T ss_pred             cCCCchheee----eeeeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEE
Confidence            8754221100    024679999997665544433 3344689999987773

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=97.00  E-value=0.0071  Score=48.80  Aligned_cols=104  Identities=13%  Similarity=0.065  Sum_probs=70.5

Q ss_pred             cCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc-chHHHHHHHhhcccCCC
Q 029764           19 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSENEG   96 (188)
Q Consensus        19 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~   96 (188)
                      .++.+|+-+|+| .|-.+..+++... ..+|+.+|.+++.++.|++....    ..+..... +.........    ...
T Consensus       167 ~~~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~~g~----~~~~~~~~~~~~~~~~~~t----~g~  237 (350)
T COG1063         167 RPGGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEAGGA----DVVVNPSEDDAGAEILELT----GGR  237 (350)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHhCCC----eEeecCccccHHHHHHHHh----CCC
Confidence            344489999998 4667777888775 68999999999999999885421    11111112 2222222221    124


Q ss_pred             ceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           97 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        97 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      .+|++|-...   ....++++.+.+++||.+++-.+..
T Consensus       238 g~D~vie~~G---~~~~~~~ai~~~r~gG~v~~vGv~~  272 (350)
T COG1063         238 GADVVIEAVG---SPPALDQALEALRPGGTVVVVGVYG  272 (350)
T ss_pred             CCCEEEECCC---CHHHHHHHHHHhcCCCEEEEEeccC
Confidence            7999997654   4557889999999999999876554

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=96.97  E-value=0.028  Score=39.34  Aligned_cols=112  Identities=17%  Similarity=0.183  Sum_probs=60.0

Q ss_pred             HHHHHHHHcCC--CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029764           11 LMAMLLRLVNA--KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   88 (188)
Q Consensus        11 ~l~~l~~~~~~--~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   88 (188)
                      .|.+.+.....  .-|||+|-|.|..=-.+-..+| +.+|+.+|-.-.....        ..++.-.++.||+.+.++.+
T Consensus        17 ~L~~a~~~v~~~~G~VlElGLGNGRTydHLRe~~p-~R~I~vfDR~l~~hp~--------~~P~~~~~ilGdi~~tl~~~   87 (160)
T PF12692_consen   17 CLNWAAAQVAGLPGPVLELGLGNGRTYDHLREIFP-DRRIYVFDRALACHPS--------STPPEEDLILGDIRETLPAL   87 (160)
T ss_dssp             HHHHHHHHTTT--S-EEEE--TTSHHHHHHHHH---SS-EEEEESS--S-GG--------G---GGGEEES-HHHHHHHH
T ss_pred             HHHHHHHHhcCCCCceEEeccCCCccHHHHHHhCC-CCeEEEEeeecccCCC--------CCCchHheeeccHHHHhHHH
Confidence            44555544433  3699999999998888888888 8999999964222111        11233458999999988873


Q ss_pred             hhcccCCCceeEEEEeCCccc---hHHHH----HHHHhccCcCeEEEEecccc
Q 029764           89 LKYSENEGSFDYAFVDADKDN---YCNYH----ERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        89 ~~~~~~~~~~D~i~id~~~~~---~~~~~----~~~~~~L~~gG~lv~~~~~~  134 (188)
                      ...   ..+.-++..|....+   -..+.    ..+.++|.+||++|....+.
T Consensus        88 ~~~---g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~pl~  137 (160)
T PF12692_consen   88 ARF---GAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQPLY  137 (160)
T ss_dssp             HHH----S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS---
T ss_pred             Hhc---CCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCccc
Confidence            322   456667777742222   11222    22347999999999877664

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.89  E-value=0.0018  Score=49.84  Aligned_cols=112  Identities=17%  Similarity=0.103  Sum_probs=63.7

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCC---c-----------------------
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH---K-----------------------   73 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~---~-----------------------   73 (188)
                      ++.++||||||.-..  .+..+.+.-.+|++.|..+.-.+..++.+++.+..+   .                       
T Consensus        56 ~g~~llDiGsGPtiy--~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~  133 (256)
T PF01234_consen   56 KGETLLDIGSGPTIY--QLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR  133 (256)
T ss_dssp             -EEEEEEES-TT--G--GGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHH--hhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence            456899999987432  222222223489999999988888887776543111   0                       


Q ss_pred             -E-EEEEcchHHHHHHHhhcccCCCceeEEEEeC-------CccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           74 -I-NFIESEALSVLDQLLKYSENEGSFDYAFVDA-------DKDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        74 -~-~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~-------~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                       + +++..|..+.- .+.......++||+|+.-.       +.+.+...++++.++|||||.+++..++.
T Consensus       134 ~Vk~Vv~cDV~~~~-pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~  202 (256)
T PF01234_consen  134 AVKQVVPCDVTQPN-PLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLG  202 (256)
T ss_dssp             HEEEEEE--TTSSS-TTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred             hhceEEEeeccCCC-CCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence             1 12223322110 0000000013599997652       45667888999999999999999977664

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.76  E-value=0.0071  Score=45.54  Aligned_cols=84  Identities=10%  Similarity=0.193  Sum_probs=57.1

Q ss_pred             CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc-CCCCcEEEEE-cchHHHHHHHhhcccCCCcee
Q 029764           22 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-GVDHKINFIE-SEALSVLDQLLKYSENEGSFD   99 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~D   99 (188)
                      .++||||+|.-+.=- +.-....+-+.++.|+++..+..|+.++..+ ++...+++.. .|...+++.....   .+.||
T Consensus        80 i~~LDIGvGAnCIYP-liG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~---nE~yd  155 (292)
T COG3129          80 IRILDIGVGANCIYP-LIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGK---NERYD  155 (292)
T ss_pred             eEEEeeccCcccccc-cccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccc---cceee
Confidence            479999987654311 2221123678999999999999999998876 6666677654 4444455554321   57899


Q ss_pred             EEEEeCCccc
Q 029764          100 YAFVDADKDN  109 (188)
Q Consensus       100 ~i~id~~~~~  109 (188)
                      +..++.+...
T Consensus       156 ~tlCNPPFh~  165 (292)
T COG3129         156 ATLCNPPFHD  165 (292)
T ss_pred             eEecCCCcch
Confidence            9999865443

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=96.76  E-value=0.0062  Score=41.50  Aligned_cols=92  Identities=20%  Similarity=0.252  Sum_probs=61.9

Q ss_pred             cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCccc
Q 029764           30 FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN  109 (188)
Q Consensus        30 g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~  109 (188)
                      |.|..++.+|+..  +.+|+++|.+++..+.+++    .|...-+.....|..+.+.++.    ....+|+||-...   
T Consensus         1 ~vG~~a~q~ak~~--G~~vi~~~~~~~k~~~~~~----~Ga~~~~~~~~~~~~~~i~~~~----~~~~~d~vid~~g---   67 (130)
T PF00107_consen    1 GVGLMAIQLAKAM--GAKVIATDRSEEKLELAKE----LGADHVIDYSDDDFVEQIRELT----GGRGVDVVIDCVG---   67 (130)
T ss_dssp             HHHHHHHHHHHHT--TSEEEEEESSHHHHHHHHH----TTESEEEETTTSSHHHHHHHHT----TTSSEEEEEESSS---
T ss_pred             ChHHHHHHHHHHc--CCEEEEEECCHHHHHHHHh----hccccccccccccccccccccc----ccccceEEEEecC---
Confidence            4688999999986  4899999999988777765    3422111111223444444442    1247999987543   


Q ss_pred             hHHHHHHHHhccCcCeEEEEecccc
Q 029764          110 YCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus       110 ~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      ....++.+..+++++|.+++-....
T Consensus        68 ~~~~~~~~~~~l~~~G~~v~vg~~~   92 (130)
T PF00107_consen   68 SGDTLQEAIKLLRPGGRIVVVGVYG   92 (130)
T ss_dssp             SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred             cHHHHHHHHHHhccCCEEEEEEccC
Confidence            2467888999999999999865543

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=96.75  E-value=0.06  Score=40.22  Aligned_cols=118  Identities=14%  Similarity=0.149  Sum_probs=66.3

Q ss_pred             HHHHHHHHHc---CCCEEEEEcccchHHHHHHHhhCCCC-CEEEEEeCCchhHHHHHHHHHhc-----------------
Q 029764           10 QLMAMLLRLV---NAKKTIEIGVFTGYSLLLTALTIPED-GQITAIDVNRETYEIGLPIIKKA-----------------   68 (188)
Q Consensus        10 ~~l~~l~~~~---~~~~vLeiG~g~G~~~~~la~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~-----------------   68 (188)
                      ++++.-++..   .|-++.|..||+|+....+..-.+.. ..|++-|+++++++.|++|+.-.                 
T Consensus        38 Ei~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e  117 (246)
T PF11599_consen   38 EIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYE  117 (246)
T ss_dssp             HHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHH
Confidence            4444443333   44589999999999776665543322 57999999999999997654322                 


Q ss_pred             ------------------------CCCCcEEEEEcchHHH--HHHHhhcccCCCceeEEEEeC-------Cc-----cch
Q 029764           69 ------------------------GVDHKINFIESEALSV--LDQLLKYSENEGSFDYAFVDA-------DK-----DNY  110 (188)
Q Consensus        69 ------------------------~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~D~i~id~-------~~-----~~~  110 (188)
                                              |-.....+.+.|.++-  +....    .....|+|+.|.       |.     ...
T Consensus       118 ~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~----~~~~~diViTDlPYG~~t~W~g~~~~~p~  193 (246)
T PF11599_consen  118 QYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLD----AGFTPDIVITDLPYGEMTSWQGEGSGGPV  193 (246)
T ss_dssp             HH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHH----TT---SEEEEE--CCCSSSTTS---HHHH
T ss_pred             HcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhc----cCCCCCEEEecCCCcccccccCCCCCCcH
Confidence                                    1111245566666552  22221    134579999983       11     124


Q ss_pred             HHHHHHHHhccCcCeEEEEec
Q 029764          111 CNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus       111 ~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      ..+++.+.+.|..++++++.|
T Consensus       194 ~~ml~~l~~vLp~~sVV~v~~  214 (246)
T PF11599_consen  194 AQMLNSLAPVLPERSVVAVSD  214 (246)
T ss_dssp             HHHHHHHHCCS-TT-EEEEEE
T ss_pred             HHHHHHHHhhCCCCcEEEEec
Confidence            578899999997777877743

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=96.73  E-value=0.0069  Score=50.40  Aligned_cols=120  Identities=12%  Similarity=0.128  Sum_probs=69.6

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeC--CchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDV--NRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~--~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      +-..|+|..+|.|..++.|...   ..-|.-+=+  .+..+..    +-.-|+   +...+ |-.+.++..      ..+
T Consensus       365 ~iRNVMDMnAg~GGFAAAL~~~---~VWVMNVVP~~~~ntL~v----IydRGL---IG~yh-DWCE~fsTY------PRT  427 (506)
T PF03141_consen  365 RIRNVMDMNAGYGGFAAALIDD---PVWVMNVVPVSGPNTLPV----IYDRGL---IGVYH-DWCEAFSTY------PRT  427 (506)
T ss_pred             ceeeeeeecccccHHHHHhccC---CceEEEecccCCCCcchh----hhhccc---chhcc-chhhccCCC------Ccc
Confidence            3458999999999999998753   222322222  2222221    222232   22222 333333332      579


Q ss_pred             eeEEEEeCCcc------chHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeE
Q 029764           98 FDYAFVDADKD------NYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQ  171 (188)
Q Consensus        98 ~D~i~id~~~~------~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (188)
                      ||+|..++-.+      .....+-++-+.|+|+|.+++.|...                  +...++.+...+    +++
T Consensus       428 YDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~------------------vl~~v~~i~~~l----rW~  485 (506)
T PF03141_consen  428 YDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVD------------------VLEKVKKIAKSL----RWE  485 (506)
T ss_pred             hhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHH------------------HHHHHHHHHHhC----cce
Confidence            99998774222      24566777789999999999976553                  455566666665    555


Q ss_pred             EEEeecC
Q 029764          172 LSHVALG  178 (188)
Q Consensus       172 ~~~lp~~  178 (188)
                      +.+....
T Consensus       486 ~~~~d~e  492 (506)
T PF03141_consen  486 VRIHDTE  492 (506)
T ss_pred             EEEEecC
Confidence            5555433

; GO: 0008168 methyltransferase activity

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=96.71  E-value=0.0044  Score=50.75  Aligned_cols=59  Identities=24%  Similarity=0.351  Sum_probs=51.3

Q ss_pred             EEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029764           23 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   83 (188)
Q Consensus        23 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   83 (188)
                      .+||||+|+|-.+...+++.  .-.++++|.-..+.+.|++...++|.+++++++...+.+
T Consensus        69 ~vLdigtGTGLLSmMAvrag--aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSte  127 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAG--ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTE  127 (636)
T ss_pred             EEEEccCCccHHHHHHHHhc--CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccce
Confidence            58999999999998888875  347999999999999999999999999999988755433

>PRK11524 putative methyltransferase; Provisional

Probab=96.68  E-value=0.0077  Score=47.19  Aligned_cols=56  Identities=11%  Similarity=0.094  Sum_probs=45.8

Q ss_pred             HHHHHHHHHH--cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHh
Q 029764            9 GQLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK   67 (188)
Q Consensus         9 ~~~l~~l~~~--~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~   67 (188)
                      .+|+..++..  .++..|||..+|+|..++...+.   +.+.+|+|++++.++.|++.++.
T Consensus       195 ~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~l---gR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        195 EALLKRIILASSNPGDIVLDPFAGSFTTGAVAKAS---GRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             HHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHh
Confidence            4566766654  46779999999999988876654   67999999999999999998754

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=96.63  E-value=0.0023  Score=46.85  Aligned_cols=110  Identities=13%  Similarity=0.091  Sum_probs=64.2

Q ss_pred             HHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHH------HHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029764           16 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG------LPIIKKAGVDHKINFIESEALSVLDQLL   89 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a------~~~~~~~~~~~~~~~~~~d~~~~~~~~~   89 (188)
                      +...++.+|+|+-.|.|+++.-++....+.+.|++.-..+...-..      +....+..+ .|++.+-.+.....    
T Consensus        44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~-aN~e~~~~~~~A~~----  118 (238)
T COG4798          44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVY-ANVEVIGKPLVALG----  118 (238)
T ss_pred             eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhh-hhhhhhCCcccccC----
Confidence            3466778999999999999999999887778888875533211100      111111111 12333322221111    


Q ss_pred             hcccCCCceeEEEEeC----------CccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           90 KYSENEGSFDYAFVDA----------DKDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        90 ~~~~~~~~~D~i~id~----------~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                          ..+..|+++...          +......+...+.+.|||||++++.|...
T Consensus       119 ----~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a  169 (238)
T COG4798         119 ----APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRA  169 (238)
T ss_pred             ----CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccc
Confidence                024455554321          12234567788899999999988877653

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=96.57  E-value=0.04  Score=44.96  Aligned_cols=107  Identities=17%  Similarity=0.171  Sum_probs=68.0

Q ss_pred             HHHcCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcc-hHHHHHHHhhccc
Q 029764           16 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE-ALSVLDQLLKYSE   93 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~   93 (188)
                      ....++.+||.+|+|. |..+..+|+... ..++++++.+++..+.+++..   +. ..+.....+ ..+.+..+.    
T Consensus       180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~----  250 (386)
T cd08283         180 AEVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELT----  250 (386)
T ss_pred             ccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHc----
Confidence            3455677999999987 888888998864 346999999998888777642   21 112222221 223333331    


Q ss_pred             CCCceeEEEEeCCc------------------cchHHHHHHHHhccCcCeEEEEec
Q 029764           94 NEGSFDYAFVDADK------------------DNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        94 ~~~~~D~i~id~~~------------------~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      ....+|+++-....                  .+....++.+.+.++++|.++.-.
T Consensus       251 ~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g  306 (386)
T cd08283         251 GGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG  306 (386)
T ss_pred             CCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence            12468988653211                  112456788889999999988754

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=96.54  E-value=0.015  Score=44.42  Aligned_cols=101  Identities=19%  Similarity=0.189  Sum_probs=61.4

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHh-----cCCCCcEEEEE---cchHHHHHHHhhc
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK-----AGVDHKINFIE---SEALSVLDQLLKY   91 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-----~~~~~~~~~~~---~d~~~~~~~~~~~   91 (188)
                      +..+|||+|+|+|..++..|...  ...++..|. +......+.+...     .++...+....   +++.+....    
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~-~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~----  158 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLL--GAEVVLTDL-PKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFR----  158 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHh--cceeccCCc-hhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhc----
Confidence            46689999999998888877754  568888776 4444444333222     22222233222   334333222    


Q ss_pred             ccCCCc-eeEEEEeC---CccchHHHHHHHHhccCcCeEEEEe
Q 029764           92 SENEGS-FDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        92 ~~~~~~-~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                         .+. +|+|+...   ..+....+...+..+|..++.+.+.
T Consensus       159 ---~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~  198 (248)
T KOG2793|consen  159 ---LPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLA  198 (248)
T ss_pred             ---cCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEE
Confidence               234 89998642   3456677788888899999955554

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=96.43  E-value=0.011  Score=44.01  Aligned_cols=52  Identities=13%  Similarity=0.144  Sum_probs=38.5

Q ss_pred             HHHHHHHHH--HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHH
Q 029764            9 GQLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLP   63 (188)
Q Consensus         9 ~~~l~~l~~--~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~   63 (188)
                      .+++..++.  ..++..|||..+|+|..+....+.   +.+.+++|++++.++.|++
T Consensus       178 ~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l---~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  178 VELIERLIKASTNPGDIVLDPFAGSGTTAVAAEEL---GRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHT---T-EEEEEESSHHHHHHHHH
T ss_pred             HHHHHHHHHhhhccceeeehhhhccChHHHHHHHc---CCeEEEEeCCHHHHHHhcC
Confidence            456666654  346679999999999988876664   6689999999999998875

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=96.42  E-value=0.14  Score=39.16  Aligned_cols=119  Identities=13%  Similarity=0.144  Sum_probs=79.1

Q ss_pred             HHHHHHHH----HHHHcCCCEEEEEcccchHHHHHHHhhCCC---CCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc
Q 029764            7 DAGQLMAM----LLRLVNAKKTIEIGVFTGYSLLLTALTIPE---DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   79 (188)
Q Consensus         7 ~~~~~l~~----l~~~~~~~~vLeiG~g~G~~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~   79 (188)
                      ..+.+++.    ++....+...+|+|+|+-.-+..+...+..   -.+++.||++...+...-+.+...-..-.+.-+.+
T Consensus        61 tEaaIl~~~a~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~  140 (321)
T COG4301          61 TEAAILQARAAEIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCG  140 (321)
T ss_pred             hHHHHHHHHHHHHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhh
Confidence            34455544    345667889999999999888888877752   26899999999988655444443221222555677


Q ss_pred             chHHHHHHHhhcccCCCceeEEEEeC-----CccchHHHHHHHHhccCcCeEEEE
Q 029764           80 EALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        80 d~~~~~~~~~~~~~~~~~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      |....+..+..    .+.-=++|+..     .+.....|+.++...|+||-++.+
T Consensus       141 ~~~~~La~~~~----~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~Ll  191 (321)
T COG4301         141 DYELALAELPR----GGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLL  191 (321)
T ss_pred             hHHHHHhcccC----CCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEE
Confidence            76655555531    23333445542     345567899999999999998877

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=96.37  E-value=0.0015  Score=50.86  Aligned_cols=102  Identities=16%  Similarity=0.065  Sum_probs=70.4

Q ss_pred             CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029764           22 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  101 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i  101 (188)
                      ..|+|+..|.||.+..+.-... ...|.++|.+|..++..+.+++.++...+..++.+|....-+        ....|-|
T Consensus       196 eviVDLYAGIGYFTlpflV~ag-Ak~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~--------~~~AdrV  266 (351)
T KOG1227|consen  196 EVIVDLYAGIGYFTLPFLVTAG-AKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP--------RLRADRV  266 (351)
T ss_pred             chhhhhhcccceEEeehhhccC-ccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc--------cccchhe
Confidence            6899999999999994443332 578999999999999999999988877777777777643311        3567888


Q ss_pred             EEeCCccchHHHHHHHHhccCc-Ce-EEEEeccc
Q 029764          102 FVDADKDNYCNYHERLMKLLKV-GG-IAVYDNTL  133 (188)
Q Consensus       102 ~id~~~~~~~~~~~~~~~~L~~-gG-~lv~~~~~  133 (188)
                      .+..-++.-..... +.+.|++ || .+-++...
T Consensus       267 nLGLlPSse~~W~~-A~k~Lk~eggsilHIHenV  299 (351)
T KOG1227|consen  267 NLGLLPSSEQGWPT-AIKALKPEGGSILHIHENV  299 (351)
T ss_pred             eeccccccccchHH-HHHHhhhcCCcEEEEeccc
Confidence            77654444333333 3355554 44 56555444

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=96.27  E-value=0.00064  Score=50.20  Aligned_cols=95  Identities=14%  Similarity=0.095  Sum_probs=62.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      ..+.++||+|.|.|-.+..++..+.   +|++.|.+..|....++.    ++    .++.  ..+....       +-+|
T Consensus       111 ~~~~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL~kk----~y----nVl~--~~ew~~t-------~~k~  170 (288)
T KOG3987|consen  111 QEPVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRLKKK----NY----NVLT--EIEWLQT-------DVKL  170 (288)
T ss_pred             CCCeeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHHhhc----CC----ceee--ehhhhhc-------Ccee
Confidence            3457999999999999999987765   788889888887655542    22    2111  1122111       3578


Q ss_pred             eEEEEeC---CccchHHHHHHHHhccCc-CeEEEEeccc
Q 029764           99 DYAFVDA---DKDNYCNYHERLMKLLKV-GGIAVYDNTL  133 (188)
Q Consensus        99 D~i~id~---~~~~~~~~~~~~~~~L~~-gG~lv~~~~~  133 (188)
                      |+|.+-.   .+-+...+++.++..|+| +|.+|+.=++
T Consensus       171 dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVL  209 (288)
T KOG3987|consen  171 DLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVL  209 (288)
T ss_pred             ehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEe
Confidence            8885421   123446788889999998 7877765433

>PRK13699 putative methylase; Provisional

Probab=96.25  E-value=0.02  Score=43.38  Aligned_cols=56  Identities=7%  Similarity=0.029  Sum_probs=44.6

Q ss_pred             HHHHHHHH--HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc
Q 029764           10 QLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA   68 (188)
Q Consensus        10 ~~l~~l~~--~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~   68 (188)
                      +++..++.  ..++..|||..||+|..+....+.   +.+.+++|++++..+.+.+.++..
T Consensus       151 ~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~---~r~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        151 TSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQS---GRRYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             HHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHH
Confidence            45555553  346779999999999988876664   669999999999999998887654

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.08  E-value=0.036  Score=36.99  Aligned_cols=89  Identities=20%  Similarity=0.110  Sum_probs=58.6

Q ss_pred             ccchHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCceeEEEEeC
Q 029764           29 VFTGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSFDYAFVDA  105 (188)
Q Consensus        29 ~g~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~D~i~id~  105 (188)
                      ||.|..+..+++.+.... +++.+|.+++..+.+++.    +    +.++.+|..+  .+.+.     ...+.+.+++..
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~----~~~i~gd~~~~~~l~~a-----~i~~a~~vv~~~   70 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G----VEVIYGDATDPEVLERA-----GIEKADAVVILT   70 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T----SEEEES-TTSHHHHHHT-----TGGCESEEEEES
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c----cccccccchhhhHHhhc-----CccccCEEEEcc
Confidence            556788888888775455 899999999987766653    2    6688899865  34433     246889998876


Q ss_pred             CccchHHHHHHHHhccCcCeEEEEe
Q 029764          106 DKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus       106 ~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ......-..-...+.+.+...+++.
T Consensus        71 ~~d~~n~~~~~~~r~~~~~~~ii~~   95 (116)
T PF02254_consen   71 DDDEENLLIALLARELNPDIRIIAR   95 (116)
T ss_dssp             SSHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred             CCHHHHHHHHHHHHHHCCCCeEEEE
Confidence            5443333344445667777777653

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=96.01  E-value=0.41  Score=37.06  Aligned_cols=110  Identities=7%  Similarity=0.040  Sum_probs=65.4

Q ss_pred             CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCC--CCcEEEEEcchHHH-HHHHhhcccCCCc
Q 029764           21 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV--DHKINFIESEALSV-LDQLLKYSENEGS   97 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~-~~~~~~~~~~~~~   97 (188)
                      ...|+.+|||.=.-...+  ..+.+.+++=+|. |+.++.-++.+.+.+.  ..+.+++..|..+. ...+...+.+...
T Consensus        82 ~~qvV~LGaGlDTr~~Rl--~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~  158 (260)
T TIGR00027        82 IRQVVILGAGLDTRAYRL--PWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA  158 (260)
T ss_pred             CcEEEEeCCccccHHHhc--CCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence            458999999655544444  2232456666665 5666666666766543  35678888887532 2333221111122


Q ss_pred             eeEEEEeC-----CccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           98 FDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        98 ~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      .-+++..+     ..+....+++.+.+...+|+.++++-..
T Consensus       159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~  199 (260)
T TIGR00027       159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVR  199 (260)
T ss_pred             CeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence            22344333     3455677888888888899999997543

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=96.01  E-value=0.013  Score=43.71  Aligned_cols=80  Identities=20%  Similarity=0.243  Sum_probs=52.2

Q ss_pred             CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH-HHHHhhcccCCCceeE
Q 029764           22 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-LDQLLKYSENEGSFDY  100 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~D~  100 (188)
                      .++|||||=+....+....    --.|+.||+++..                -.+.+.|..+. ++.-     +.+.||+
T Consensus        53 lrlLEVGals~~N~~s~~~----~fdvt~IDLns~~----------------~~I~qqDFm~rplp~~-----~~e~Fdv  107 (219)
T PF11968_consen   53 LRLLEVGALSTDNACSTSG----WFDVTRIDLNSQH----------------PGILQQDFMERPLPKN-----ESEKFDV  107 (219)
T ss_pred             ceEEeecccCCCCcccccC----ceeeEEeecCCCC----------------CCceeeccccCCCCCC-----cccceeE
Confidence            4899999976665443322    3469999998742                12445554442 2211     2478999


Q ss_pred             EEEeC------CccchHHHHHHHHhccCcCeE
Q 029764          101 AFVDA------DKDNYCNYHERLMKLLKVGGI  126 (188)
Q Consensus       101 i~id~------~~~~~~~~~~~~~~~L~~gG~  126 (188)
                      |.+..      .+...-+.+..+.+.|+++|.
T Consensus       108 Is~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~  139 (219)
T PF11968_consen  108 ISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGL  139 (219)
T ss_pred             EEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence            96552      344456788899999999999

>PRK11524 putative methyltransferase; Provisional

Probab=95.97  E-value=0.02  Score=44.89  Aligned_cols=53  Identities=21%  Similarity=0.307  Sum_probs=40.2

Q ss_pred             cEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCcc------c-------------hHHHHHHHHhccCcCeEEEEe
Q 029764           73 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------N-------------YCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        73 ~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~------~-------------~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ..+++++|+.+.+..+.     .++||+|++|.+..      .             ...++..+.++||+||.+++.
T Consensus         8 ~~~i~~gD~~~~l~~l~-----~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~   79 (284)
T PRK11524          8 AKTIIHGDALTELKKIP-----SESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM   79 (284)
T ss_pred             CCEEEeccHHHHHHhcc-----cCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            45789999999876653     47899999985421      0             135778889999999998874

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=95.90  E-value=0.12  Score=40.87  Aligned_cols=99  Identities=21%  Similarity=0.250  Sum_probs=61.4

Q ss_pred             HcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           18 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        18 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      ..++.+||..|+| .|..++.+|+..  +.++++++.+++..+.+++    .+....+.....+..+.+ ...    ...
T Consensus       163 ~~~~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~-~~~----~~~  231 (338)
T cd08254         163 VKPGETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKK-AAG----LGG  231 (338)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHH-HHh----cCC
Confidence            4556688888875 477778888875  5789999999887776644    343211111111222222 221    246


Q ss_pred             ceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           97 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        97 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      .+|+++-....   ...++.+++.|+++|.++.-
T Consensus       232 ~~D~vid~~g~---~~~~~~~~~~l~~~G~~v~~  262 (338)
T cd08254         232 GFDVIFDFVGT---QPTFEDAQKAVKPGGRIVVV  262 (338)
T ss_pred             CceEEEECCCC---HHHHHHHHHHhhcCCEEEEE
Confidence            79977643222   34677888999999998864

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=95.90  E-value=0.091  Score=42.06  Aligned_cols=99  Identities=17%  Similarity=0.238  Sum_probs=59.3

Q ss_pred             cCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           19 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        19 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      .++.+||-+|+| .|..++.+|+... ..+|+++|.+++..+.+++    +|...-+.....+..    ++...   .+.
T Consensus       168 ~~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~----~~~~~---~g~  235 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLD----HYKAE---KGY  235 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHH----HHhcc---CCC
Confidence            356788888875 3456666777653 2379999999988877765    343211111111221    22111   245


Q ss_pred             eeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764           98 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        98 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      +|+||-....   ...++.+.+.|++||.++.-..
T Consensus       236 ~D~vid~~G~---~~~~~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        236 FDVSFEVSGH---PSSINTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             CCEEEECCCC---HHHHHHHHHHhhcCCEEEEEcc
Confidence            8988754322   2356778899999999987643

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.87  E-value=0.24  Score=42.01  Aligned_cols=110  Identities=19%  Similarity=0.172  Sum_probs=67.5

Q ss_pred             HcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEE--EE-------------cch
Q 029764           18 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF--IE-------------SEA   81 (188)
Q Consensus        18 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~--~~-------------~d~   81 (188)
                      ..++.+|+-+|+| .|..++..|+.+  +.+|+.+|.+++..+.+++.    |.. .+.+  ..             .+.
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~l--GA~V~a~D~~~~rle~aesl----GA~-~v~i~~~e~~~~~~gya~~~s~~~  234 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSL--GAIVRAFDTRPEVAEQVESM----GAE-FLELDFEEEGGSGDGYAKVMSEEF  234 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc----CCe-EEEeccccccccccchhhhcchhH
Confidence            3578899999998 466778888876  45899999999988877762    321 0111  01             011


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCccc--hHHH-HHHHHhccCcCeEEEEeccccCc
Q 029764           82 LSVLDQLLKYSENEGSFDYAFVDADKDN--YCNY-HERLMKLLKVGGIAVYDNTLWGG  136 (188)
Q Consensus        82 ~~~~~~~~~~~~~~~~~D~i~id~~~~~--~~~~-~~~~~~~L~~gG~lv~~~~~~~g  136 (188)
                      .+.......+  ....+|++|-....+.  .... .+++.+.+|+||+++.-.....|
T Consensus       235 ~~~~~~~~~~--~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~GG  290 (509)
T PRK09424        235 IKAEMALFAE--QAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAENGG  290 (509)
T ss_pred             HHHHHHHHHh--ccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCCCC
Confidence            1111111100  1246999987653221  1234 48899999999998876554334

>PRK13699 putative methylase; Provisional

Probab=95.85  E-value=0.021  Score=43.28  Aligned_cols=51  Identities=16%  Similarity=0.264  Sum_probs=39.2

Q ss_pred             EEEEEcchHHHHHHHhhcccCCCceeEEEEeCCcc------------------chHHHHHHHHhccCcCeEEEE
Q 029764           74 INFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------------------NYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        74 ~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~------------------~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      .+++++|+.+.+..+.     .+++|+|+.|.+..                  -....+.++.++|||||.+++
T Consensus         2 ~~l~~gD~le~l~~lp-----d~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i   70 (227)
T PRK13699          2 SRFILGNCIDVMARFP-----DNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS   70 (227)
T ss_pred             CeEEechHHHHHHhCC-----ccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            3678999999988874     68999999994321                  123567888899999998875

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=95.79  E-value=0.027  Score=38.50  Aligned_cols=50  Identities=26%  Similarity=0.360  Sum_probs=37.6

Q ss_pred             EEEEEcchHHHHHHHhhcccCCCceeEEEEeCC--ccc----hHHHHHHHHhccCcCeEEEE
Q 029764           74 INFIESEALSVLDQLLKYSENEGSFDYAFVDAD--KDN----YCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        74 ~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~--~~~----~~~~~~~~~~~L~~gG~lv~  129 (188)
                      +++..+|+.+.++++      ...+|+||.|+-  ..+    ..+++..+.+++++||.+..
T Consensus        33 L~L~~gDa~~~l~~l------~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~T   88 (124)
T PF05430_consen   33 LTLWFGDAREMLPQL------DARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLAT   88 (124)
T ss_dssp             EEEEES-HHHHHHHB-------T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEEEcHHHHHHHhC------cccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEE
Confidence            567889999988886      479999999962  222    36799999999999999986

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=95.71  E-value=0.23  Score=39.91  Aligned_cols=101  Identities=11%  Similarity=0.069  Sum_probs=63.3

Q ss_pred             HHcCCCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc-chHHHHHHHhhccc
Q 029764           17 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSE   93 (188)
Q Consensus        17 ~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~   93 (188)
                      ...++.+||-.|+  +.|..++.+|+..  +.++++++.+++..+.+++.   .|...-+..... +..+.+....    
T Consensus       155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~----  225 (348)
T PLN03154        155 SPKKGDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLKNK---LGFDEAFNYKEEPDLDAALKRYF----  225 (348)
T ss_pred             CCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHh---cCCCEEEECCCcccHHHHHHHHC----
Confidence            3456778998887  4777888888875  57899999888766655432   343221221111 3333333321    


Q ss_pred             CCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           94 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        94 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                       .+.+|++|-...    ...+..+++.|+++|.+++-.
T Consensus       226 -~~gvD~v~d~vG----~~~~~~~~~~l~~~G~iv~~G  258 (348)
T PLN03154        226 -PEGIDIYFDNVG----GDMLDAALLNMKIHGRIAVCG  258 (348)
T ss_pred             -CCCcEEEEECCC----HHHHHHHHHHhccCCEEEEEC
Confidence             246898873322    235678889999999998754

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=95.70  E-value=0.24  Score=39.06  Aligned_cols=100  Identities=11%  Similarity=0.043  Sum_probs=62.4

Q ss_pred             HHHcCCCEEEEEc--ccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029764           16 LRLVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   93 (188)
Q Consensus        16 ~~~~~~~~vLeiG--~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   93 (188)
                      ....++.+||-.|  .+.|..++.+|+..  +.++++++.+++..+.+++    .|...-+.....+..+.+..+.    
T Consensus       139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~~----  208 (329)
T cd08294         139 CKPKAGETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEEALKEAA----  208 (329)
T ss_pred             cCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHHC----
Confidence            3455677888887  45677888888875  5689999888877666654    3532212211123333333321    


Q ss_pred             CCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           94 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        94 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                       ...+|+|+ |..-   ...+...++.|+++|.++.-
T Consensus       209 -~~gvd~vl-d~~g---~~~~~~~~~~l~~~G~iv~~  240 (329)
T cd08294         209 -PDGIDCYF-DNVG---GEFSSTVLSHMNDFGRVAVC  240 (329)
T ss_pred             -CCCcEEEE-ECCC---HHHHHHHHHhhccCCEEEEE
Confidence             35699887 3322   14567888999999998864

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=95.61  E-value=0.23  Score=39.35  Aligned_cols=95  Identities=14%  Similarity=0.158  Sum_probs=67.7

Q ss_pred             CCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764           21 AKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   99 (188)
Q Consensus        21 ~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   99 (188)
                      +..|.-||.| .|..+..+|..+  ++.|+.+|.|.+.+......+     ..+++..-.+...+....       .++|
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~gl--gA~Vtild~n~~rl~~ldd~f-----~~rv~~~~st~~~iee~v-------~~aD  233 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGL--GADVTILDLNIDRLRQLDDLF-----GGRVHTLYSTPSNIEEAV-------KKAD  233 (371)
T ss_pred             CccEEEECCccccchHHHHHhcc--CCeeEEEecCHHHHhhhhHhh-----CceeEEEEcCHHHHHHHh-------hhcc
Confidence            3356677776 577888888876  689999999998887776655     246777777776665444       5788


Q ss_pred             EEEEe---CCccchHHHHHHHHhccCcCeEEEE
Q 029764          100 YAFVD---ADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus       100 ~i~id---~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      +++-.   .....+.-..+++...+|||+++|=
T Consensus       234 lvIgaVLIpgakaPkLvt~e~vk~MkpGsVivD  266 (371)
T COG0686         234 LVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVD  266 (371)
T ss_pred             EEEEEEEecCCCCceehhHHHHHhcCCCcEEEE
Confidence            88643   2233444566788899999998874

>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted

Probab=95.50  E-value=0.17  Score=38.71  Aligned_cols=114  Identities=15%  Similarity=0.178  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029764            6 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   85 (188)
Q Consensus         6 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   85 (188)
                      +....++..+...++... +..-+|+-..+..+.+   +.-+.+.+|+.|+-.+..++++..   ..++.+++.|..+.+
T Consensus        44 ~~l~~yl~~v~~~n~~~~-l~~YPGSP~ia~~llR---~qDrl~l~ELHp~d~~~L~~~~~~---~~~v~v~~~DG~~~l  116 (245)
T PF04378_consen   44 PALQPYLDAVRALNPDGE-LRFYPGSPAIAARLLR---EQDRLVLFELHPQDFEALKKNFRR---DRRVRVHHRDGYEGL  116 (245)
T ss_dssp             GGGHHHHHHHHHHSSSSS---EEE-HHHHHHHHS----TTSEEEEE--SHHHHHHHTTS--T---TS-EEEE-S-HHHHH
T ss_pred             HHHHHHHHHHHHhccCCC-cCcCCCCHHHHHHhCC---ccceEEEEecCchHHHHHHHHhcc---CCccEEEeCchhhhh
Confidence            344566666666665544 5566666556665555   367999999999999988888764   347999999999877


Q ss_pred             HHHhhcccCCCceeEEEEeCC---ccchHHHHHHHHhccC--cCeEEEE
Q 029764           86 DQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLK--VGGIAVY  129 (188)
Q Consensus        86 ~~~~~~~~~~~~~D~i~id~~---~~~~~~~~~~~~~~L~--~gG~lv~  129 (188)
                      ..+...   ...=-+|+||.+   +.++....+.+...++  +.|++++
T Consensus       117 ~allPP---~~rRglVLIDPpYE~~~dy~~v~~~l~~a~kR~~~G~~~i  162 (245)
T PF04378_consen  117 KALLPP---PERRGLVLIDPPYEQKDDYQRVVDALAKALKRWPTGVYAI  162 (245)
T ss_dssp             HHH-S----TTS-EEEEE-----STTHHHHHHHHHHHHHHH-TTSEEEE
T ss_pred             hhhCCC---CCCCeEEEECCCCCCchHHHHHHHHHHHHHHhcCCcEEEE
Confidence            665422   345569999974   3455555555554444  4555544

; PDB: 2OO3_A.

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=95.50  E-value=0.033  Score=42.78  Aligned_cols=47  Identities=11%  Similarity=0.017  Sum_probs=37.3

Q ss_pred             CCEEEEEcccchHHHHHHHhhCCC-------CCEEEEEeCCchhHHHHHHHHHh
Q 029764           21 AKKTIEIGVFTGYSLLLTALTIPE-------DGQITAIDVNRETYEIGLPIIKK   67 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~~~-------~~~v~~iD~~~~~~~~a~~~~~~   67 (188)
                      +-+|+|+|+|.|..+..+++.+..       ..+++.||.+|...+.-++.+..
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            359999999999999998887652       35899999999998888887765

; PDB: 4F3N_A 1ZKD_B.

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.45  E-value=0.068  Score=40.35  Aligned_cols=97  Identities=14%  Similarity=0.179  Sum_probs=61.0

Q ss_pred             CCEEEEEcccchHHHHHHHhhCCC----C----CEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhh
Q 029764           21 AKKTIEIGVFTGYSLLLTALTIPE----D----GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLK   90 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~~~----~----~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~   90 (188)
                      .++++|+....|+++..+.+.+-.    .    .+|++||+.+=+           ++. .+.-+++|...  .+.....
T Consensus        42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~-GV~qlq~DIT~~stae~Ii~  109 (294)
T KOG1099|consen   42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIE-GVIQLQGDITSASTAEAIIE  109 (294)
T ss_pred             hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccC-ceEEeecccCCHhHHHHHHH
Confidence            468999999999999998886631    1    239999996521           233 24555666432  2222211


Q ss_pred             cccCCCceeEEEEeCCcc-----chH---------HHHHHHHhccCcCeEEEEe
Q 029764           91 YSENEGSFDYAFVDADKD-----NYC---------NYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        91 ~~~~~~~~D~i~id~~~~-----~~~---------~~~~~~~~~L~~gG~lv~~  130 (188)
                      . +..++.|+|++|+.+.     +..         ..+.-....|++||.+|..
T Consensus       110 h-fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK  162 (294)
T KOG1099|consen  110 H-FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK  162 (294)
T ss_pred             H-hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence            1 2356899999997432     222         2233344799999999874

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=95.44  E-value=0.21  Score=40.43  Aligned_cols=101  Identities=24%  Similarity=0.353  Sum_probs=60.0

Q ss_pred             HcCCCEEEEEccc-chHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764           18 LVNAKKTIEIGVF-TGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        18 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      ..++.+||-.|+| .|..+..+|+..  +. +|+++|.+++..+.+++    .|...-+.....+..+.+..+.     .
T Consensus       189 i~~g~~VlV~G~G~vG~~a~~lak~~--G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~-----~  257 (371)
T cd08281         189 VRPGQSVAVVGLGGVGLSALLGAVAA--GASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELT-----G  257 (371)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHh-----C
Confidence            4566788888875 344556667654  44 69999999988777654    3432111111122222232221     2


Q ss_pred             CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764           96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      +.+|++|-....   ...++.+.+.++++|.++.-..
T Consensus       258 ~g~d~vid~~G~---~~~~~~~~~~l~~~G~iv~~G~  291 (371)
T cd08281         258 GGVDYAFEMAGS---VPALETAYEITRRGGTTVTAGL  291 (371)
T ss_pred             CCCCEEEECCCC---hHHHHHHHHHHhcCCEEEEEcc
Confidence            368988743221   3456777889999999887543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=95.42  E-value=0.22  Score=39.89  Aligned_cols=94  Identities=13%  Similarity=0.097  Sum_probs=57.1

Q ss_pred             cCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           19 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        19 ~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      .++.+||-+|+|. |..++.+++......+|+++|.+++.++.+++    .+.   ...+  +  +. ..       ...
T Consensus       162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~~~~--~--~~-~~-------~~g  222 (341)
T cd08237         162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---TYLI--D--DI-PE-------DLA  222 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---eeeh--h--hh-hh-------ccC
Confidence            4577999999752 33445566642214689999999888777764    221   1111  1  11 11       235


Q ss_pred             eeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           98 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        98 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      +|+||=..........++...++|++||.+++-.
T Consensus       223 ~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G  256 (341)
T cd08237         223 VDHAFECVGGRGSQSAINQIIDYIRPQGTIGLMG  256 (341)
T ss_pred             CcEEEECCCCCccHHHHHHHHHhCcCCcEEEEEe
Confidence            8988743222113456788889999999998754

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=95.41  E-value=0.26  Score=39.42  Aligned_cols=104  Identities=19%  Similarity=0.200  Sum_probs=65.6

Q ss_pred             HHHHcCCCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcc
Q 029764           15 LLRLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS   92 (188)
Q Consensus        15 l~~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~   92 (188)
                      .....++.+||-.|.  |.|..++.||+.+.  ..++.+-.+++..+.+    .+.|-..-+.+...|..+.+.++.   
T Consensus       137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G--~~~v~~~~s~~k~~~~----~~lGAd~vi~y~~~~~~~~v~~~t---  207 (326)
T COG0604         137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALG--ATVVAVVSSSEKLELL----KELGADHVINYREEDFVEQVRELT---  207 (326)
T ss_pred             hcCCCCCCEEEEecCCchHHHHHHHHHHHcC--CcEEEEecCHHHHHHH----HhcCCCEEEcCCcccHHHHHHHHc---
Confidence            344667889999984  45567888999863  3666666665544433    344543334555566655555542   


Q ss_pred             cCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764           93 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        93 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                       ....+|+|+-..    -...+......|+++|.++.-..
T Consensus       208 -~g~gvDvv~D~v----G~~~~~~~l~~l~~~G~lv~ig~  242 (326)
T COG0604         208 -GGKGVDVVLDTV----GGDTFAASLAALAPGGRLVSIGA  242 (326)
T ss_pred             -CCCCceEEEECC----CHHHHHHHHHHhccCCEEEEEec
Confidence             124799998532    23456667889999998887544

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=95.41  E-value=0.038  Score=46.45  Aligned_cols=102  Identities=15%  Similarity=0.096  Sum_probs=70.8

Q ss_pred             CCEEEEEcccchHHHHH---HHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           21 AKKTIEIGVFTGYSLLL---TALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~---la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ...|+-+|.|.|-..-.   .|+......++++||-+|.++-..+. .......++++++.+|-.+..+.       ..+
T Consensus       368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap-------~eq  439 (649)
T KOG0822|consen  368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAP-------REQ  439 (649)
T ss_pred             eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCc-------hhh
Confidence            34688899999965444   33433345789999999998876665 22233457899999998765321       267


Q ss_pred             eeEEEEe-----CCccchHHHHHHHHhccCcCeEEEEe
Q 029764           98 FDYAFVD-----ADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        98 ~D~i~id-----~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      .|+++..     ++-+--.+.++.+...|||.|+-|-.
T Consensus       440 ~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP~  477 (649)
T KOG0822|consen  440 ADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISIPS  477 (649)
T ss_pred             ccchHHHhhccccCccCCHHHHHHHHhhcCCCceEccc
Confidence            8888643     23344567889999999999876643

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=95.41  E-value=0.063  Score=43.41  Aligned_cols=52  Identities=13%  Similarity=0.189  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHH
Q 029764            9 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGL   62 (188)
Q Consensus         9 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~   62 (188)
                      .+++..+....+.+.++|+|.|.|+.+.+++-.+  +..|.+||-+...-+.|+
T Consensus       142 selvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~  193 (476)
T KOG2651|consen  142 SELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQ  193 (476)
T ss_pred             HHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHH
Confidence            4566667777788899999999999999998765  689999999876655554

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=95.39  E-value=0.28  Score=39.51  Aligned_cols=103  Identities=15%  Similarity=0.160  Sum_probs=61.3

Q ss_pred             HHcCCCEEEEEccc-chHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           17 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        17 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      ...++.+||-.|+| .|..++.+|+..  +. +|+++|.+++..+.+++    .|...-+.....+..+.+....    .
T Consensus       173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~--G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~----~  242 (358)
T TIGR03451       173 GVKRGDSVAVIGCGGVGDAAIAGAALA--GASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALT----G  242 (358)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHh----C
Confidence            34567789988874 244566677765  44 59999999887777654    3432112222223333333321    1


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      ...+|+|+-....   ...++...+.+++||.+++-..
T Consensus       243 ~~g~d~vid~~g~---~~~~~~~~~~~~~~G~iv~~G~  277 (358)
T TIGR03451       243 GFGADVVIDAVGR---PETYKQAFYARDLAGTVVLVGV  277 (358)
T ss_pred             CCCCCEEEECCCC---HHHHHHHHHHhccCCEEEEECC
Confidence            2468988743221   2356677889999999987543

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=95.28  E-value=0.36  Score=36.58  Aligned_cols=99  Identities=20%  Similarity=0.256  Sum_probs=61.3

Q ss_pred             cCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           19 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        19 ~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      .++.+||-.|+|+ |..++.+++..  +.++++++.+++..+.+++.    +....+.....+....+. ..    ....
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~-~~----~~~~  201 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKEL----GADHVIDYKEEDLEEELR-LT----GGGG  201 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHh----CCceeccCCcCCHHHHHH-Hh----cCCC
Confidence            5677999999885 66777777764  57899999988776665432    321111111122222211 11    2467


Q ss_pred             eeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           98 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        98 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      +|+++-....   ......+.+.|+++|.++.-.
T Consensus       202 ~d~vi~~~~~---~~~~~~~~~~l~~~G~~v~~~  232 (271)
T cd05188         202 ADVVIDAVGG---PETLAQALRLLRPGGRIVVVG  232 (271)
T ss_pred             CCEEEECCCC---HHHHHHHHHhcccCCEEEEEc
Confidence            9999864322   145677788999999988643

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=95.16  E-value=0.7  Score=33.84  Aligned_cols=126  Identities=17%  Similarity=0.219  Sum_probs=63.6

Q ss_pred             EEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHH------------HHhcCCCCcEEEEEcchHHHHHHHh
Q 029764           23 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPI------------IKKAGVDHKINFIESEALSVLDQLL   89 (188)
Q Consensus        23 ~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~------------~~~~~~~~~~~~~~~d~~~~~~~~~   89 (188)
                      +|--+|.  |+.++.+|..+. .+-+|+++|++++.++..++-            +++..-..++.+ ..|..+.+    
T Consensus         2 ~I~ViGl--GyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~-t~~~~~ai----   74 (185)
T PF03721_consen    2 KIAVIGL--GYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRA-TTDIEEAI----   74 (185)
T ss_dssp             EEEEE----STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEE-ESEHHHHH----
T ss_pred             EEEEECC--CcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchh-hhhhhhhh----
Confidence            4555666  444443333332 257999999999877766531            111000122332 22222211    


Q ss_pred             hcccCCCceeEEEEeCC----------ccchHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHHH
Q 029764           90 KYSENEGSFDYAFVDAD----------KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILD  159 (188)
Q Consensus        90 ~~~~~~~~~D~i~id~~----------~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  159 (188)
                            ...|++|+.-+          ........+.+.+.++++..+|+......|.               .......
T Consensus        75 ------~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGt---------------t~~~~~~  133 (185)
T PF03721_consen   75 ------KDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGT---------------TEELLKP  133 (185)
T ss_dssp             ------HH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTH---------------HHHHHHH
T ss_pred             ------hccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEee---------------ehHhhhh
Confidence                  34688887531          2234667788889999999999988887663               2324555


Q ss_pred             HHHHhhcC-CCeEEEEee
Q 029764          160 LNRSLADD-PRVQLSHVA  176 (188)
Q Consensus       160 ~~~~~~~~-~~~~~~~lp  176 (188)
                      +++..... .+|.....|
T Consensus       134 ile~~~~~~~~f~la~~P  151 (185)
T PF03721_consen  134 ILEKRSGKKEDFHLAYSP  151 (185)
T ss_dssp             HHHHHCCTTTCEEEEE--
T ss_pred             hhhhhcccccCCeEEECC
Confidence            55543321 456666655

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=95.14  E-value=0.054  Score=42.25  Aligned_cols=69  Identities=12%  Similarity=-0.010  Sum_probs=49.1

Q ss_pred             EEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEE
Q 029764           23 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF  102 (188)
Q Consensus        23 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~  102 (188)
                      +++|+.||.|..+..+...-  -..+.++|+++.+++..+.|+..       .++.+|..++...-.     ...+|+++
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~~-----~~~~D~l~   67 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDF-----IPDIDLLT   67 (275)
T ss_pred             cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhhc-----CCCCCEEE
Confidence            68999999999988877642  23578899999999988887632       145667655432210     25799999


Q ss_pred             EeC
Q 029764          103 VDA  105 (188)
Q Consensus       103 id~  105 (188)
                      .+.
T Consensus        68 ~gp   70 (275)
T cd00315          68 GGF   70 (275)
T ss_pred             eCC
Confidence            773

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=95.14  E-value=0.1  Score=41.98  Aligned_cols=48  Identities=21%  Similarity=0.054  Sum_probs=39.6

Q ss_pred             CEEEEEcccchHHHHHHHhhCC-------CCCEEEEEeCCchhHHHHHHHHHhcC
Q 029764           22 KKTIEIGVFTGYSLLLTALTIP-------EDGQITAIDVNRETYEIGLPIIKKAG   69 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~-------~~~~v~~iD~~~~~~~~a~~~~~~~~   69 (188)
                      -.++|+|+|.|..+..+++.+.       ...++..||+|++....-+++++...
T Consensus        79 ~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~  133 (370)
T COG1565          79 LKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE  133 (370)
T ss_pred             ceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc
Confidence            4799999999999998887652       25799999999999888888776653

>cd08293 PTGR2 Prostaglandin reductase

Probab=95.00  E-value=0.48  Score=37.71  Aligned_cols=95  Identities=14%  Similarity=0.135  Sum_probs=58.8

Q ss_pred             CEEEEEcc--cchHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           22 KKTIEIGV--FTGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        22 ~~vLeiG~--g~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .+||-.|.  +.|..++.+|+..  +. +|++++.+++..+.+++.   .|...-+.....+..+.+..+.     ...+
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk~~--G~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~~i~~~~-----~~gv  225 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGRLL--GCSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAERLRELC-----PEGV  225 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHHC-----CCCc
Confidence            68888885  5777888888875  55 799998888766655543   3532211111123333333331     2579


Q ss_pred             eEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           99 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      |+|+ |....   ..+..+++.|+++|.++.-
T Consensus       226 d~vi-d~~g~---~~~~~~~~~l~~~G~iv~~  253 (345)
T cd08293         226 DVYF-DNVGG---EISDTVISQMNENSHIILC  253 (345)
T ss_pred             eEEE-ECCCc---HHHHHHHHHhccCCEEEEE
Confidence            9888 33221   1247788999999998863

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=94.91  E-value=0.52  Score=37.46  Aligned_cols=101  Identities=16%  Similarity=0.212  Sum_probs=58.6

Q ss_pred             HHcCCCEEEEEccc-chHHHHHHHhhCCCCCE-EEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           17 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        17 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      ...++.+||-+|+| .|..++.+|+..  +.+ +++++.+++..+.+++    .|...-+.....+ .+.+.+..    .
T Consensus       160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~--G~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~-~~~~~~~~----~  228 (339)
T cd08239         160 GVSGRDTVLVVGAGPVGLGALMLARAL--GAEDVIGVDPSPERLELAKA----LGADFVINSGQDD-VQEIRELT----S  228 (339)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----hCCCEEEcCCcch-HHHHHHHh----C
Confidence            34567788888764 334555677765  455 9999998887766654    3432111111122 22222221    1


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      ...+|++|-....   ...+....+.|+++|.+++-.
T Consensus       229 ~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g  262 (339)
T cd08239         229 GAGADVAIECSGN---TAARRLALEAVRPWGRLVLVG  262 (339)
T ss_pred             CCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEEc
Confidence            3479988843222   234566778999999988643

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=94.82  E-value=0.7  Score=36.95  Aligned_cols=104  Identities=16%  Similarity=0.216  Sum_probs=61.9

Q ss_pred             HHcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764           17 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        17 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      ...++.+||-.|+| .|..++.+|+... ...+++++.+++..+.+++    .|...-+.....+..+.+..+.    ..
T Consensus       163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~----~~  233 (351)
T cd08285         163 NIKLGDTVAVFGIGPVGLMAVAGARLRG-AGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLT----GG  233 (351)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHh----CC
Confidence            34566788888765 4556667777653 3368999998877666654    3432112221223222222321    13


Q ss_pred             CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764           96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      ..+|+++-....   ...+..+++.|+++|.++.-..
T Consensus       234 ~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~g~  267 (351)
T cd08285         234 KGVDAVIIAGGG---QDTFEQALKVLKPGGTISNVNY  267 (351)
T ss_pred             CCCcEEEECCCC---HHHHHHHHHHhhcCCEEEEecc
Confidence            569988754322   2456788899999999886443

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=94.80  E-value=0.085  Score=37.21  Aligned_cols=43  Identities=16%  Similarity=0.179  Sum_probs=28.4

Q ss_pred             EEcccch--HHHHHHH-hhCCCCCEEEEEeCCchhHHHHHHH--HHhc
Q 029764           26 EIGVFTG--YSLLLTA-LTIPEDGQITAIDVNRETYEIGLPI--IKKA   68 (188)
Q Consensus        26 eiG~g~G--~~~~~la-~~~~~~~~v~~iD~~~~~~~~a~~~--~~~~   68 (188)
                      |||++.|  .++..++ +...++.+++++|++|..+...+++  +...
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~   48 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN   48 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence            7999999  6666654 2344478999999999999999988  5544

; PDB: 2PY6_A.

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=94.79  E-value=1.4  Score=33.83  Aligned_cols=115  Identities=10%  Similarity=0.080  Sum_probs=79.8

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029764            5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   84 (188)
Q Consensus         5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   84 (188)
                      ..+...++..+-+.+++.. |..-+|+-..+..+.+.   .-++..+|+.|+-....+++|..   ..++.+..+|....
T Consensus        74 pa~l~~yl~~i~~lN~~~~-l~~YpGSP~lA~~llR~---qDRl~l~ELHp~D~~~L~~~f~~---d~~vrv~~~DG~~~  146 (279)
T COG2961          74 PAELEPYLDAVRQLNPGGG-LRYYPGSPLLARQLLRE---QDRLVLTELHPSDAPLLRNNFAG---DRRVRVLRGDGFLA  146 (279)
T ss_pred             hHHHHHHHHHHHHhCCCCC-cccCCCCHHHHHHHcch---hceeeeeecCccHHHHHHHHhCC---CcceEEEecCcHHH
Confidence            4556667777777777766 78888888887777764   67999999999999999999863   45799999999876


Q ss_pred             HHHHhhcccCCCceeEEEEeCCc---cchHHHHHHHHhccC--cCeEEEE
Q 029764           85 LDQLLKYSENEGSFDYAFVDADK---DNYCNYHERLMKLLK--VGGIAVY  129 (188)
Q Consensus        85 ~~~~~~~~~~~~~~D~i~id~~~---~~~~~~~~~~~~~L~--~gG~lv~  129 (188)
                      +...+.   ..+.=-+|+||.+.   .++....+.+.+.++  ++|.+.+
T Consensus       147 l~a~LP---P~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yai  193 (279)
T COG2961         147 LKAHLP---PKERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAI  193 (279)
T ss_pred             HhhhCC---CCCcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEE
Confidence            655432   23456799999754   345544444443333  3444443

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=94.73  E-value=0.89  Score=35.91  Aligned_cols=101  Identities=12%  Similarity=0.071  Sum_probs=61.8

Q ss_pred             HHHcCCCEEEEEc--ccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc-chHHHHHHHhhcc
Q 029764           16 LRLVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYS   92 (188)
Q Consensus        16 ~~~~~~~~vLeiG--~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~   92 (188)
                      ....++.+||-.|  .+.|..++.+|+..  +.++++++.+++..+.+++    .|...-+..... +..+.....    
T Consensus       134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~----  203 (325)
T TIGR02825       134 CGVKGGETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKA----  203 (325)
T ss_pred             hCCCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHh----
Confidence            3455677898888  45777888888875  5689988888877665543    353211111111 222222222    


Q ss_pred             cCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           93 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        93 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                       ..+.+|++| |..-.   ..++..++.|+++|.++.-.
T Consensus       204 -~~~gvdvv~-d~~G~---~~~~~~~~~l~~~G~iv~~G  237 (325)
T TIGR02825       204 -SPDGYDCYF-DNVGG---EFSNTVIGQMKKFGRIAICG  237 (325)
T ss_pred             -CCCCeEEEE-ECCCH---HHHHHHHHHhCcCcEEEEec
Confidence             134799888 33211   24577889999999998643

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=94.73  E-value=0.84  Score=36.32  Aligned_cols=101  Identities=11%  Similarity=0.053  Sum_probs=62.8

Q ss_pred             HHHcCCCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc-chHHHHHHHhhcc
Q 029764           16 LRLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYS   92 (188)
Q Consensus        16 ~~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~   92 (188)
                      ....++.+||-.|+  +.|..++.+|+..  +.++++++.+++..+.+++.   .|...-+..... +..+.+....   
T Consensus       147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~--G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~---  218 (338)
T cd08295         147 CKPKKGETVFVSAASGAVGQLVGQLAKLK--GCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRYF---  218 (338)
T ss_pred             cCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHhC---
Confidence            34556789998885  5677788888875  56888888888776666543   343221221111 2223233321   


Q ss_pred             cCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           93 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        93 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                        ..++|++|- ..-   ...+..+++.|+++|.++.-
T Consensus       219 --~~gvd~v~d-~~g---~~~~~~~~~~l~~~G~iv~~  250 (338)
T cd08295         219 --PNGIDIYFD-NVG---GKMLDAVLLNMNLHGRIAAC  250 (338)
T ss_pred             --CCCcEEEEE-CCC---HHHHHHHHHHhccCcEEEEe
Confidence              257998883 321   14567888999999998864

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=94.66  E-value=0.34  Score=41.15  Aligned_cols=102  Identities=20%  Similarity=0.208  Sum_probs=59.3

Q ss_pred             cCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEE---------------EcchH
Q 029764           19 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI---------------ESEAL   82 (188)
Q Consensus        19 ~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~---------------~~d~~   82 (188)
                      .++.+++-+|+|. |..++.+++.+  +..|+.+|.+++..+.+++    +|.. .+++-               ..+..
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~l--GA~V~v~d~~~~rle~a~~----lGa~-~v~v~~~e~g~~~~gYa~~~s~~~~  234 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQS----MGAE-FLELDFKEEGGSGDGYAKVMSEEFI  234 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCe-EEeccccccccccccceeecCHHHH
Confidence            4567999999974 56677777765  5679999999987666654    2321 11111               01111


Q ss_pred             HHHHHHhhcccCCCceeEEEEeC---CccchHHHHHHHHhccCcCeEEEE
Q 029764           83 SVLDQLLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        83 ~~~~~~~~~~~~~~~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      +...++..+  ....+|+||...   ....+.-..+.+.+.+|+|+++|=
T Consensus       235 ~~~~~~~~e--~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD  282 (511)
T TIGR00561       235 AAEMELFAA--QAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD  282 (511)
T ss_pred             HHHHHHHHH--HhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence            111111110  135799997553   222222356777899999998774

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=94.57  E-value=0.64  Score=37.13  Aligned_cols=102  Identities=21%  Similarity=0.212  Sum_probs=59.1

Q ss_pred             HcCCCEEEEEccc-chHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764           18 LVNAKKTIEIGVF-TGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        18 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      ..++.+||-.|+| .|..++.+|+..  +. .+++++.+++..+.+++    .|...-+.....+ .+.+..+.    ..
T Consensus       158 ~~~g~~vlV~G~g~vG~~~~~~a~~~--G~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~-~~~~~~~~----~~  226 (347)
T PRK10309        158 GCEGKNVIIIGAGTIGLLAIQCAVAL--GAKSVTAIDINSEKLALAKS----LGAMQTFNSREMS-APQIQSVL----RE  226 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHH----cCCceEecCcccC-HHHHHHHh----cC
Confidence            3456788888874 344556677765  44 47889988887766543    3432111111112 22222221    13


Q ss_pred             CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764           96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      ..+|.+++|..-.  ...+....+.|++||.+++-..
T Consensus       227 ~~~d~~v~d~~G~--~~~~~~~~~~l~~~G~iv~~G~  261 (347)
T PRK10309        227 LRFDQLILETAGV--PQTVELAIEIAGPRAQLALVGT  261 (347)
T ss_pred             CCCCeEEEECCCC--HHHHHHHHHHhhcCCEEEEEcc
Confidence            4688666664221  3467778899999999987643

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=94.47  E-value=0.34  Score=33.09  Aligned_cols=96  Identities=18%  Similarity=0.132  Sum_probs=51.3

Q ss_pred             HHHHHHHcCCCEEEEEcccchH-HHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhh
Q 029764           12 MAMLLRLVNAKKTIEIGVFTGY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK   90 (188)
Q Consensus        12 l~~l~~~~~~~~vLeiG~g~G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   90 (188)
                      ...+++..+..+|+|+|-|.=. .+..|.+.   +..|+++|+++.   .+.         ..+.++..|..+--..+- 
T Consensus         5 a~~ia~~~~~~kiVEVGiG~~~~vA~~L~~~---G~dV~~tDi~~~---~a~---------~g~~~v~DDif~P~l~iY-   68 (127)
T PF03686_consen    5 AEYIARLNNYGKIVEVGIGFNPEVAKKLKER---GFDVIATDINPR---KAP---------EGVNFVVDDIFNPNLEIY-   68 (127)
T ss_dssp             HHHHHHHS-SSEEEEET-TT--HHHHHHHHH---S-EEEEE-SS-S----------------STTEE---SSS--HHHH-
T ss_pred             HHHHHHhCCCCcEEEECcCCCHHHHHHHHHc---CCcEEEEECccc---ccc---------cCcceeeecccCCCHHHh-
Confidence            3445556677799999998665 44445444   679999999987   111         235678888766322331 


Q ss_pred             cccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           91 YSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        91 ~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                           ...|+|+.--.+......+-.+.+  +-|.-+++.
T Consensus        69 -----~~a~lIYSiRPP~El~~~il~lA~--~v~adlii~  101 (127)
T PF03686_consen   69 -----EGADLIYSIRPPPELQPPILELAK--KVGADLIIR  101 (127)
T ss_dssp             -----TTEEEEEEES--TTSHHHHHHHHH--HHT-EEEEE
T ss_pred             -----cCCcEEEEeCCChHHhHHHHHHHH--HhCCCEEEE
Confidence                 579999988777676666666655  345555553

; PDB: 2K4M_A.

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=94.37  E-value=0.031  Score=45.70  Aligned_cols=66  Identities=21%  Similarity=0.129  Sum_probs=57.6

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCc-EEEEEcchHHHHH
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK-INFIESEALSVLD   86 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~-~~~~~~d~~~~~~   86 (188)
                      ..++..|-|+.||.|-.++..+..   +++|++-|.+|++++..+.++..+.+.+. ++++..|+.+++.
T Consensus       247 fk~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr  313 (495)
T KOG2078|consen  247 FKPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR  313 (495)
T ss_pred             cCCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhh
Confidence            456678999999999999988875   68999999999999999999988877755 9999999988774

>TIGR00518 alaDH alanine dehydrogenase

Probab=94.34  E-value=0.79  Score=37.40  Aligned_cols=104  Identities=17%  Similarity=0.080  Sum_probs=58.5

Q ss_pred             CCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           20 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        20 ~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      ++.+|+-+|+| .|..++..+..+  +.+|+.+|.+++..+.+.+.+   +  ..+.....+. +.+.+.      -..+
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~l--Ga~V~v~d~~~~~~~~l~~~~---g--~~v~~~~~~~-~~l~~~------l~~a  231 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGL--GATVTILDINIDRLRQLDAEF---G--GRIHTRYSNA-YEIEDA------VKRA  231 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHhc---C--ceeEeccCCH-HHHHHH------HccC
Confidence            56679999987 566666666665  468999999887655444332   2  1122212222 222232      2578


Q ss_pred             eEEEEeCC---ccchHHHHHHHHhccCcCeEEEEeccccCcc
Q 029764           99 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWGGT  137 (188)
Q Consensus        99 D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~  137 (188)
                      |+|+....   ...+.-+-+...+.++++++++--.+...|.
T Consensus       232 DvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva~d~GG~  273 (370)
T TIGR00518       232 DLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVAIDQGGC  273 (370)
T ss_pred             CEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEEEecCCCCC
Confidence            99987531   1111112355667789998766533333343

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PLN02740 Alcohol dehydrogenase-like

Probab=94.27  E-value=0.92  Score=36.92  Aligned_cols=102  Identities=20%  Similarity=0.272  Sum_probs=59.6

Q ss_pred             HHHcCCCEEEEEccc-chHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE--cchHHHHHHHhhc
Q 029764           16 LRLVNAKKTIEIGVF-TGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKY   91 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~   91 (188)
                      ....++.+||-+|+| .|..++.+|+..  +. +|+++|.+++.++.+++    .|....+....  .+..+.+..+.  
T Consensus       194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~--G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~--  265 (381)
T PLN02740        194 ANVQAGSSVAIFGLGAVGLAVAEGARAR--GASKIIGVDINPEKFEKGKE----MGITDFINPKDSDKPVHERIREMT--  265 (381)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHC--CCCcEEEEcCChHHHHHHHH----cCCcEEEecccccchHHHHHHHHh--
Confidence            345667789999875 334555667664  44 69999999988777754    34322121111  11223333321  


Q ss_pred             ccCCCceeEEEEeCCccchHHHHHHHHhccCcC-eEEEEec
Q 029764           92 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDN  131 (188)
Q Consensus        92 ~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~  131 (188)
                         .+.+|++|-....   ...+......+++| |.+++-.
T Consensus       266 ---~~g~dvvid~~G~---~~~~~~a~~~~~~g~G~~v~~G  300 (381)
T PLN02740        266 ---GGGVDYSFECAGN---VEVLREAFLSTHDGWGLTVLLG  300 (381)
T ss_pred             ---CCCCCEEEECCCC---hHHHHHHHHhhhcCCCEEEEEc
Confidence               2369988754322   24566777888886 8877644

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=94.26  E-value=0.57  Score=37.55  Aligned_cols=108  Identities=22%  Similarity=0.322  Sum_probs=69.2

Q ss_pred             HHHcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc-chHHHHHHHhhccc
Q 029764           16 LRLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSE   93 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~   93 (188)
                      ++..++.+|.-+||| .|-.++.-|.... ..+|+++|++++.++.|++.    |-..-+..... |..+.+..+.    
T Consensus       181 a~v~~G~tvaV~GlGgVGlaaI~gA~~ag-A~~IiAvD~~~~Kl~~A~~f----GAT~~vn~~~~~~vv~~i~~~T----  251 (366)
T COG1062         181 AKVEPGDTVAVFGLGGVGLAAIQGAKAAG-AGRIIAVDINPEKLELAKKF----GATHFVNPKEVDDVVEAIVELT----  251 (366)
T ss_pred             ccCCCCCeEEEEeccHhHHHHHHHHHHcC-CceEEEEeCCHHHHHHHHhc----CCceeecchhhhhHHHHHHHhc----
Confidence            356677899999997 4666677666654 68999999999998888763    43222222112 3444444442    


Q ss_pred             CCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccccCc
Q 029764           94 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGG  136 (188)
Q Consensus        94 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  136 (188)
                       .+..|..|-...   ..+.+++....+.++|..++-.+.-.+
T Consensus       252 -~gG~d~~~e~~G---~~~~~~~al~~~~~~G~~v~iGv~~~~  290 (366)
T COG1062         252 -DGGADYAFECVG---NVEVMRQALEATHRGGTSVIIGVAGAG  290 (366)
T ss_pred             -CCCCCEEEEccC---CHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence             347888864321   233677777778889988875544433

>PLN02827 Alcohol dehydrogenase-like

Probab=94.25  E-value=0.81  Score=37.27  Aligned_cols=102  Identities=22%  Similarity=0.249  Sum_probs=58.6

Q ss_pred             HHcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE--cchHHHHHHHhhccc
Q 029764           17 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSE   93 (188)
Q Consensus        17 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~   93 (188)
                      ...++.+||-.|+| .|..++.+|+... ...++++|.+++..+.+++    .|...-+....  .+..+.+.++.    
T Consensus       190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G-~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~----  260 (378)
T PLN02827        190 DVSKGSSVVIFGLGTVGLSVAQGAKLRG-ASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMT----  260 (378)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHh----
Confidence            35567799988864 3445556676643 2368899988887766644    34321111111  12222233321    


Q ss_pred             CCCceeEEEEeCCccchHHHHHHHHhccCcC-eEEEEec
Q 029764           94 NEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDN  131 (188)
Q Consensus        94 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~  131 (188)
                       .+.+|+|+-....   ...+....+.+++| |.+++-.
T Consensus       261 -~~g~d~vid~~G~---~~~~~~~l~~l~~g~G~iv~~G  295 (378)
T PLN02827        261 -GGGADYSFECVGD---TGIATTALQSCSDGWGLTVTLG  295 (378)
T ss_pred             -CCCCCEEEECCCC---hHHHHHHHHhhccCCCEEEEEC
Confidence             2368988743222   23466778889998 9998744

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=94.22  E-value=0.96  Score=36.26  Aligned_cols=107  Identities=21%  Similarity=0.222  Sum_probs=60.5

Q ss_pred             HcCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           18 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        18 ~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      ..++.+|+-.|+|. |..++.+|+..  +.++++++.+++..+.+++    .|...-+.....+..+......+. -...
T Consensus       164 ~~~g~~VlV~G~G~vG~~a~~~a~~~--G~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~-t~~~  236 (349)
T TIGR03201       164 LKKGDLVIVIGAGGVGGYMVQTAKAM--GAAVVAIDIDPEKLEMMKG----FGADLTLNPKDKSAREVKKLIKAF-AKAR  236 (349)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH----hCCceEecCccccHHHHHHHHHhh-cccC
Confidence            45677999999854 66677778775  4689999999988777654    243211211111111222211110 0123


Q ss_pred             ceeE---EEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           97 SFDY---AFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        97 ~~D~---i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      .+|.   +++|..-  ....++.+.+.|++||.+++-...
T Consensus       237 g~d~~~d~v~d~~g--~~~~~~~~~~~l~~~G~iv~~G~~  274 (349)
T TIGR03201       237 GLRSTGWKIFECSG--SKPGQESALSLLSHGGTLVVVGYT  274 (349)
T ss_pred             CCCCCcCEEEECCC--ChHHHHHHHHHHhcCCeEEEECcC
Confidence            4551   3444321  134566778899999999876543

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=94.19  E-value=0.73  Score=32.66  Aligned_cols=94  Identities=17%  Similarity=0.093  Sum_probs=59.1

Q ss_pred             EEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcC------CCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           24 TIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG------VDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        24 vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~------~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      |.-+|+|.+..++....... +.+|+....+++.++..++.-....      ++.++.+ ..|..+.+          ..
T Consensus         2 I~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~----------~~   69 (157)
T PF01210_consen    2 IAVIGAGNWGTALAALLADN-GHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL----------ED   69 (157)
T ss_dssp             EEEESSSHHHHHHHHHHHHC-TEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH----------TT
T ss_pred             EEEECcCHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh----------Cc
Confidence            56678876665554333222 5689999999888877776533211      1133433 34543332          46


Q ss_pred             eeEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764           98 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        98 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      .|+|++.-+......+++++.+.++++-.+++
T Consensus        70 ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~  101 (157)
T PF01210_consen   70 ADIIIIAVPSQAHREVLEQLAPYLKKGQIIIS  101 (157)
T ss_dssp             -SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEE
T ss_pred             ccEEEecccHHHHHHHHHHHhhccCCCCEEEE
Confidence            79999988777888999999999988877776

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=94.15  E-value=0.043  Score=42.57  Aligned_cols=92  Identities=23%  Similarity=0.179  Sum_probs=62.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      ..+..++|+|||.|-...     ..+.+.+++.|.+...+..++..    +   -.....+|+.....       ...+|
T Consensus        44 ~~gsv~~d~gCGngky~~-----~~p~~~~ig~D~c~~l~~~ak~~----~---~~~~~~ad~l~~p~-------~~~s~  104 (293)
T KOG1331|consen   44 PTGSVGLDVGCGNGKYLG-----VNPLCLIIGCDLCTGLLGGAKRS----G---GDNVCRADALKLPF-------REESF  104 (293)
T ss_pred             CCcceeeecccCCcccCc-----CCCcceeeecchhhhhccccccC----C---CceeehhhhhcCCC-------CCCcc
Confidence            335689999999996422     11367899999988877766542    1   11456677765422       25789


Q ss_pred             eEEEEeCCc------cchHHHHHHHHhccCcCeEEEE
Q 029764           99 DYAFVDADK------DNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        99 D~i~id~~~------~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      |.++.-+..      ......++.+.+.|+|||...+
T Consensus       105 d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lv  141 (293)
T KOG1331|consen  105 DAALSIAVIHHLSTRERRERALEELLRVLRPGGNALV  141 (293)
T ss_pred             ccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence            988755322      2235678899999999997655

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=94.11  E-value=1.8  Score=33.47  Aligned_cols=101  Identities=18%  Similarity=0.211  Sum_probs=59.0

Q ss_pred             cCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           19 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        19 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      .++.+||-+|+| .|..++.+|+... ..+|+.+|.+++..+.+++    .|...-+.  ..+..+.+..+.    ....
T Consensus       119 ~~g~~VlV~G~G~vG~~~~~~ak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~--~~~~~~~~~~~~----~~~g  187 (280)
T TIGR03366       119 LKGRRVLVVGAGMLGLTAAAAAAAAG-AARVVAADPSPDRRELALS----FGATALAE--PEVLAERQGGLQ----NGRG  187 (280)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCCcEecC--chhhHHHHHHHh----CCCC
Confidence            356789888874 3445666777652 2348889988887766655    34321111  111112222221    1346


Q ss_pred             eeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           98 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        98 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      +|++|-....   ...++.+.+.++++|.++.-...
T Consensus       188 ~d~vid~~G~---~~~~~~~~~~l~~~G~iv~~G~~  220 (280)
T TIGR03366       188 VDVALEFSGA---TAAVRACLESLDVGGTAVLAGSV  220 (280)
T ss_pred             CCEEEECCCC---hHHHHHHHHHhcCCCEEEEeccC
Confidence            8988753222   34567788999999999875543

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.99  E-value=1.1  Score=36.73  Aligned_cols=136  Identities=13%  Similarity=0.146  Sum_probs=76.5

Q ss_pred             CCEEEEEcc-cch--HHHHHHHhhCCC-C--CEEEEEeC-CchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029764           21 AKKTIEIGV-FTG--YSLLLTALTIPE-D--GQITAIDV-NRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   93 (188)
Q Consensus        21 ~~~vLeiG~-g~G--~~~~~la~~~~~-~--~~v~~iD~-~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   93 (188)
                      |..|+=+|- |+|  .+...+|..+.+ +  .-++|.|. .+.+.+..++|..+.+++-...+...|...+..+-.+. +
T Consensus       101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~-f  179 (483)
T KOG0780|consen  101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR-F  179 (483)
T ss_pred             CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH-H
Confidence            334555554 233  233445555432 2  45777784 66788888998887775533334444554433221110 1


Q ss_pred             CCCceeEEEEeCC--ccchHHHHHHH---HhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHHHHhhcCC
Q 029764           94 NEGSFDYAFVDAD--KDNYCNYHERL---MKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDP  168 (188)
Q Consensus        94 ~~~~~D~i~id~~--~~~~~~~~~~~---~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (188)
                      ..+.||+|++|-.  +..-..+++++   .+.++|+-++++-|... |.   +           .....++|.+.+    
T Consensus       180 Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasi-GQ---a-----------ae~Qa~aFk~~v----  240 (483)
T KOG0780|consen  180 KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASI-GQ---A-----------AEAQARAFKETV----  240 (483)
T ss_pred             HhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccc-cH---h-----------HHHHHHHHHHhh----
Confidence            2578999999943  33334455554   57899999888766553 10   0           334466666664    


Q ss_pred             CeEEEEee
Q 029764          169 RVQLSHVA  176 (188)
Q Consensus       169 ~~~~~~lp  176 (188)
                      ++....+.
T Consensus       241 dvg~vIlT  248 (483)
T KOG0780|consen  241 DVGAVILT  248 (483)
T ss_pred             ccceEEEE
Confidence            66665553

>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]

Probab=93.76  E-value=0.068  Score=43.20  Aligned_cols=87  Identities=21%  Similarity=0.224  Sum_probs=68.2

Q ss_pred             HHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcc
Q 029764           13 AMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS   92 (188)
Q Consensus        13 ~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~   92 (188)
                      +.++.-.++.+|+|+.|-.|..|..+|...+..+++.+.|.+++.....++.+...|.+. ++...+|.... +...   
T Consensus       206 A~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~-~~~~~~df~~t-~~~~---  280 (413)
T KOG2360|consen  206 AHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSI-VESVEGDFLNT-ATPE---  280 (413)
T ss_pred             hhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCc-cccccccccCC-CCcc---
Confidence            455566677899999999999999999988778999999999999999999999888763 66668887654 2221   


Q ss_pred             cCCCceeEEEEeC
Q 029764           93 ENEGSFDYAFVDA  105 (188)
Q Consensus        93 ~~~~~~D~i~id~  105 (188)
                       .......|++|.
T Consensus       281 -~~~~v~~iL~Dp  292 (413)
T KOG2360|consen  281 -KFRDVTYILVDP  292 (413)
T ss_pred             -cccceeEEEeCC
Confidence             235566777773

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=93.69  E-value=1  Score=35.77  Aligned_cols=37  Identities=32%  Similarity=0.591  Sum_probs=28.1

Q ss_pred             CceeEEE----EeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           96 GSFDYAF----VDADKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        96 ~~~D~i~----id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      +.||+|+    +|. .++..++++.+...|+|||+-|=-.++
T Consensus       258 ~~~d~VvTcfFIDT-a~NileYi~tI~~iLk~GGvWiNlGPL  298 (369)
T KOG2798|consen  258 GSYDVVVTCFFIDT-AHNILEYIDTIYKILKPGGVWINLGPL  298 (369)
T ss_pred             CccceEEEEEEeec-hHHHHHHHHHHHHhccCCcEEEeccce
Confidence            4799884    553 457789999999999999987654444

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=93.61  E-value=1  Score=35.70  Aligned_cols=102  Identities=19%  Similarity=0.210  Sum_probs=58.4

Q ss_pred             HHcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764           17 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        17 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      +..++.+||-.|+| .|..++.+|+... ..++++++.+++....+++    .+....+.....+..+.+....    ..
T Consensus       164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~----~~  234 (347)
T cd05278         164 GIKPGSTVAVIGAGPVGLCAVAGARLLG-AARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELT----GG  234 (347)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHc----CC
Confidence            34556788887764 4667777888753 2478888877766655543    2321111111222223233321    13


Q ss_pred             CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ..+|+++-....   ...+...++.|+++|.++.-
T Consensus       235 ~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~  266 (347)
T cd05278         235 RGVDCVIEAVGF---EETFEQAVKVVRPGGTIANV  266 (347)
T ss_pred             CCCcEEEEccCC---HHHHHHHHHHhhcCCEEEEE
Confidence            579988743211   24677778999999998864

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=93.52  E-value=1.8  Score=32.03  Aligned_cols=93  Identities=14%  Similarity=0.113  Sum_probs=48.1

Q ss_pred             HcCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCc-------------------hhHHHHHHHHHhcCCCCcEEEE
Q 029764           18 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFI   77 (188)
Q Consensus        18 ~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~   77 (188)
                      ..+..+|+-+|||. |...+..+.... -++++.+|.+.                   ...+.+.+.+...+-.-+++.+
T Consensus        18 kl~~~~VlviG~GglGs~ia~~La~~G-v~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~   96 (202)
T TIGR02356        18 RLLNSHVLIIGAGGLGSPAALYLAGAG-VGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTAL   96 (202)
T ss_pred             HhcCCCEEEECCCHHHHHHHHHHHHcC-CCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence            44567899999974 443333222222 36899999762                   3344555566554422234444


Q ss_pred             EcchHH-HHHHHhhcccCCCceeEEEEeCCccchHHHHHHH
Q 029764           78 ESEALS-VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERL  117 (188)
Q Consensus        78 ~~d~~~-~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~  117 (188)
                      ...... .+..+      ...+|+|+...+.......+...
T Consensus        97 ~~~i~~~~~~~~------~~~~D~Vi~~~d~~~~r~~l~~~  131 (202)
T TIGR02356        97 KERVTAENLELL------INNVDLVLDCTDNFATRYLINDA  131 (202)
T ss_pred             hhcCCHHHHHHH------HhCCCEEEECCCCHHHHHHHHHH
Confidence            333322 22333      36799988654433333333333

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=93.49  E-value=1.2  Score=35.44  Aligned_cols=93  Identities=13%  Similarity=0.068  Sum_probs=57.7

Q ss_pred             HHcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764           17 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        17 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      ...++.+||-.|+| .|..++.+|+..  +.++++++.+++..+.+++    .|...   ++...  +.         ..
T Consensus       162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~----~Ga~~---vi~~~--~~---------~~  221 (329)
T TIGR02822       162 SLPPGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALA----LGAAS---AGGAY--DT---------PP  221 (329)
T ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----hCCce---ecccc--cc---------Cc
Confidence            34567789998864 344556677764  5689999998887666554    35321   11111  10         02


Q ss_pred             CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764           96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      +.+|+++.....   ...+....+.|++||.+++-..
T Consensus       222 ~~~d~~i~~~~~---~~~~~~~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       222 EPLDAAILFAPA---GGLVPPALEALDRGGVLAVAGI  255 (329)
T ss_pred             ccceEEEECCCc---HHHHHHHHHhhCCCcEEEEEec
Confidence            457876643222   2467788899999999987544

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=93.43  E-value=1.6  Score=34.54  Aligned_cols=102  Identities=18%  Similarity=0.260  Sum_probs=61.9

Q ss_pred             HHHcCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           16 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      ....++.+||-.|+|. |..++.+|+..  +.+++++..+++..+.+++    .+...-+.....+..+.+....    .
T Consensus       155 ~~l~~g~~vLI~g~g~vG~~a~~lA~~~--g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~----~  224 (337)
T cd08261         155 AGVTAGDTVLVVGAGPIGLGVIQVAKAR--GARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELT----D  224 (337)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHh----C
Confidence            3445677899888763 67777888875  6788888888777665543    2322112222223223333332    1


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ...+|+++-....   ...+..+++.|+++|.++.-
T Consensus       225 ~~~vd~vld~~g~---~~~~~~~~~~l~~~G~~i~~  257 (337)
T cd08261         225 GEGADVVIDATGN---PASMEEAVELVAHGGRVVLV  257 (337)
T ss_pred             CCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEEE
Confidence            3468999864322   34567788899999988753

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=93.43  E-value=2  Score=34.75  Aligned_cols=103  Identities=19%  Similarity=0.299  Sum_probs=59.9

Q ss_pred             HHcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE--cchHHHHHHHhhccc
Q 029764           17 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSE   93 (188)
Q Consensus        17 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~   93 (188)
                      ...++.+||-.|+| .|..++.+|+... ..+|+++|.+++..+.+++    .|...-+....  .+..+.+.++.    
T Consensus       182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G-~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~----  252 (368)
T TIGR02818       182 KVEEGDTVAVFGLGGIGLSVIQGARMAK-ASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEIT----  252 (368)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHHh----
Confidence            34567789988875 3456666777653 2379999999988777754    34321111111  11222222221    


Q ss_pred             CCCceeEEEEeCCccchHHHHHHHHhccCcC-eEEEEecc
Q 029764           94 NEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNT  132 (188)
Q Consensus        94 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  132 (188)
                       .+.+|+++-....   ...+..+.+.++++ |.+++-..
T Consensus       253 -~~g~d~vid~~G~---~~~~~~~~~~~~~~~G~~v~~g~  288 (368)
T TIGR02818       253 -DGGVDYSFECIGN---VNVMRAALECCHKGWGESIIIGV  288 (368)
T ss_pred             -CCCCCEEEECCCC---HHHHHHHHHHhhcCCCeEEEEec
Confidence             2368988743221   34567778889886 88776543

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd08230 glucose_DH Glucose dehydrogenase

Probab=93.24  E-value=0.78  Score=36.83  Aligned_cols=96  Identities=13%  Similarity=0.114  Sum_probs=57.4

Q ss_pred             cCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeC---CchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           19 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDV---NRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        19 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~---~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      .++.+|+-+|+| .|..++.+|+..  +.++++++.   +++..+.++    +.|.. .+.....+..+ . .      .
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~~~~~----~~Ga~-~v~~~~~~~~~-~-~------~  235 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLR--GFEVYVLNRRDPPDPKADIVE----ELGAT-YVNSSKTPVAE-V-K------L  235 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHH----HcCCE-EecCCccchhh-h-h------h
Confidence            366789988876 355677777775  458999886   455555444    33432 12111111111 1 1      1


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      ...+|+||-....   ...+....+.|++||.+++-..
T Consensus       236 ~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~G~  270 (355)
T cd08230         236 VGEFDLIIEATGV---PPLAFEALPALAPNGVVILFGV  270 (355)
T ss_pred             cCCCCEEEECcCC---HHHHHHHHHHccCCcEEEEEec
Confidence            3579988764332   2356778899999999887543

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=93.20  E-value=0.37  Score=30.85  Aligned_cols=85  Identities=11%  Similarity=0.046  Sum_probs=52.9

Q ss_pred             EEEEcccchHHHHHHHhhCC-CC---CEEEEE-eCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           24 TIEIGVFTGYSLLLTALTIP-ED---GQITAI-DVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        24 vLeiG~g~G~~~~~la~~~~-~~---~~v~~i-D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      |-=||+  |..+..+++.+- .+   .+++.+ +.+++......+.+   +    +.+...+..+.+.          ..
T Consensus         2 I~iIG~--G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~---~----~~~~~~~~~~~~~----------~a   62 (96)
T PF03807_consen    2 IGIIGA--GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY---G----VQATADDNEEAAQ----------EA   62 (96)
T ss_dssp             EEEEST--SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC---T----TEEESEEHHHHHH----------HT
T ss_pred             EEEECC--CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh---c----cccccCChHHhhc----------cC
Confidence            334555  665555555432 13   578844 99998776665543   2    4444445555432          47


Q ss_pred             eEEEEeCCccchHHHHHHHHhccCcCeEEE
Q 029764           99 DYAFVDADKDNYCNYHERLMKLLKVGGIAV  128 (188)
Q Consensus        99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv  128 (188)
                      |+||+...+....+.++++ ..+.++..+|
T Consensus        63 dvvilav~p~~~~~v~~~i-~~~~~~~~vi   91 (96)
T PF03807_consen   63 DVVILAVKPQQLPEVLSEI-PHLLKGKLVI   91 (96)
T ss_dssp             SEEEE-S-GGGHHHHHHHH-HHHHTTSEEE
T ss_pred             CEEEEEECHHHHHHHHHHH-hhccCCCEEE
Confidence            9999998888888888888 6666766665

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=93.11  E-value=0.99  Score=39.04  Aligned_cols=100  Identities=16%  Similarity=0.159  Sum_probs=63.1

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH-----HHHHHhhc
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS-----VLDQLLKY   91 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-----~~~~~~~~   91 (188)
                      .+.+...|||+||..|.+....++.+|.++-|++||+-|=.           . .+++..++.|...     -+..... 
T Consensus        41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik-----------p-~~~c~t~v~dIttd~cr~~l~k~l~-  107 (780)
T KOG1098|consen   41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK-----------P-IPNCDTLVEDITTDECRSKLRKILK-  107 (780)
T ss_pred             cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc-----------c-CCccchhhhhhhHHHHHHHHHHHHH-
Confidence            35677889999999999999999999988999999986521           1 1223333333221     1222221 


Q ss_pred             ccCCCceeEEEEeCCccc--------------hHHHHHHHHhccCcCeEEEEeccc
Q 029764           92 SENEGSFDYAFVDADKDN--------------YCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        92 ~~~~~~~D~i~id~~~~~--------------~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                         -.+.|+|+.|+.+.-              ....++.+...|+.||.++. .++
T Consensus       108 ---t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvt-kvf  159 (780)
T KOG1098|consen  108 ---TWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVT-KVF  159 (780)
T ss_pred             ---hCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcccc-ccc
Confidence               245699999864321              11234445578999999543 344

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=93.09  E-value=0.95  Score=37.27  Aligned_cols=103  Identities=19%  Similarity=0.221  Sum_probs=61.3

Q ss_pred             HcCCCEEEEEc--ccchHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHhc----CCCCcEEEEE----cchHHHHH
Q 029764           18 LVNAKKTIEIG--VFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKA----GVDHKINFIE----SEALSVLD   86 (188)
Q Consensus        18 ~~~~~~vLeiG--~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~----~~~~~~~~~~----~d~~~~~~   86 (188)
                      ..++.+|+-+|  .+.|..++.+|+.... ..+|+++|.+++.++.+++.+...    |.  ...++.    .+..+.+.
T Consensus       173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga--~~~~i~~~~~~~~~~~v~  250 (410)
T cd08238         173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGI--ELLYVNPATIDDLHATLM  250 (410)
T ss_pred             CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCc--eEEEECCCccccHHHHHH
Confidence            34556888886  3467777778876421 237999999999988888753211    21  111222    12323333


Q ss_pred             HHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764           87 QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        87 ~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      .+.    ....+|+++.....   ...+....+.++++|.+++
T Consensus       251 ~~t----~g~g~D~vid~~g~---~~~~~~a~~~l~~~G~~v~  286 (410)
T cd08238         251 ELT----GGQGFDDVFVFVPV---PELVEEADTLLAPDGCLNF  286 (410)
T ss_pred             HHh----CCCCCCEEEEcCCC---HHHHHHHHHHhccCCeEEE
Confidence            332    13479988865322   3456778889998876544

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=92.89  E-value=2.3  Score=34.82  Aligned_cols=113  Identities=15%  Similarity=0.141  Sum_probs=72.4

Q ss_pred             HHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHH-------HHHHhcCC-CCcEEEEEcchHH--HH
Q 029764           16 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGL-------PIIKKAGV-DHKINFIESEALS--VL   85 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~-------~~~~~~~~-~~~~~~~~~d~~~--~~   85 (188)
                      +..++.....|+|+|.|....+.|.... ...=+|+++.......+.       +.....|- .+.++.++++..+  ..
T Consensus       188 l~~g~~D~F~DLGSGVGqlv~~~aa~a~-~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v  266 (419)
T KOG3924|consen  188 LKLGPADVFMDLGSGVGQLVCFVAAYAG-CKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRV  266 (419)
T ss_pred             hccCCCCcccCCCcccchhhHHHHHhhc-cccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHH
Confidence            3567778999999999999888877543 345566665443332222       11222333 3557888888754  33


Q ss_pred             HHHhhcccCCCceeEEEEeCCcc--chHHHHHHHHhccCcCeEEEEeccccC
Q 029764           86 DQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVGGIAVYDNTLWG  135 (188)
Q Consensus        86 ~~~~~~~~~~~~~D~i~id~~~~--~~~~~~~~~~~~L~~gG~lv~~~~~~~  135 (188)
                      ..+      ....++||+....-  ...--++.+...+++|..++-.+.+..
T Consensus       267 ~eI------~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~~~L~~  312 (419)
T KOG3924|consen  267 TEI------QTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISSKPLVP  312 (419)
T ss_pred             HHH------hhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEeccccccc
Confidence            344      35678999874322  222234578889999999999887763

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=92.79  E-value=2.7  Score=33.26  Aligned_cols=109  Identities=11%  Similarity=0.151  Sum_probs=68.3

Q ss_pred             CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCC--CcEEEEEcchH-H-HHHHHhhcccCCC
Q 029764           21 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD--HKINFIESEAL-S-VLDQLLKYSENEG   96 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~~~~~~~d~~-~-~~~~~~~~~~~~~   96 (188)
                      ...|+-+|||-=  +...--..+++.+++=+|. |+.++.=++.+...+..  ...+.+..|.. + ....+.+.+.+..
T Consensus        93 ~~qvViLgaGLD--TRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~  169 (297)
T COG3315          93 IRQVVILGAGLD--TRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS  169 (297)
T ss_pred             ccEEEEeccccc--cceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence            578999999544  4433222233567777777 77877777777776543  35778888876 3 4444543221122


Q ss_pred             ceeEEEEeC-----CccchHHHHHHHHhccCcCeEEEEecc
Q 029764           97 SFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        97 ~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      .-=++++.+     ..+....+++.+..++.+|..+++...
T Consensus       170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~  210 (297)
T COG3315         170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS  210 (297)
T ss_pred             CCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence            222344333     455677899999999988888887653

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=92.76  E-value=1.7  Score=34.06  Aligned_cols=98  Identities=17%  Similarity=0.200  Sum_probs=66.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      ..++.|+-+|---=.+...++..+|  -+|..+|+++..++...+..+..|+. +++.+.-|..+-+|+-.     .+.|
T Consensus       151 L~gK~I~vvGDDDLtsia~aLt~mp--k~iaVvDIDERli~fi~k~aee~g~~-~ie~~~~Dlr~plpe~~-----~~kF  222 (354)
T COG1568         151 LEGKEIFVVGDDDLTSIALALTGMP--KRIAVVDIDERLIKFIEKVAEELGYN-NIEAFVFDLRNPLPEDL-----KRKF  222 (354)
T ss_pred             cCCCeEEEEcCchhhHHHHHhcCCC--ceEEEEechHHHHHHHHHHHHHhCcc-chhheeehhcccChHHH-----HhhC
Confidence            3566788888443333333334444  48999999999999999999998874 58888888877666532     4789


Q ss_pred             eEEEEeCCcc--chHHHHHHHHhccCcC
Q 029764           99 DYAFVDADKD--NYCNYHERLMKLLKVG  124 (188)
Q Consensus        99 D~i~id~~~~--~~~~~~~~~~~~L~~g  124 (188)
                      |+++-|.+..  ....|+.+=...|+.-
T Consensus       223 DvfiTDPpeTi~alk~FlgRGI~tLkg~  250 (354)
T COG1568         223 DVFITDPPETIKALKLFLGRGIATLKGE  250 (354)
T ss_pred             CeeecCchhhHHHHHHHHhccHHHhcCC
Confidence            9999885432  2334444444556554

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=92.72  E-value=2  Score=35.69  Aligned_cols=88  Identities=10%  Similarity=0.018  Sum_probs=56.5

Q ss_pred             cCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           19 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        19 ~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      .++++|+-+|+|. |......++..  +.+|+.+|.++.....|++    .|.    +..  +..+    .      ...
T Consensus       200 l~GktVvViG~G~IG~~va~~ak~~--Ga~ViV~d~d~~R~~~A~~----~G~----~~~--~~~e----~------v~~  257 (413)
T cd00401         200 IAGKVAVVAGYGDVGKGCAQSLRGQ--GARVIVTEVDPICALQAAM----EGY----EVM--TMEE----A------VKE  257 (413)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEECChhhHHHHHh----cCC----EEc--cHHH----H------HcC
Confidence            4678999999984 55555566654  5689999999887766654    242    211  1111    1      145


Q ss_pred             eeEEEEeCCccchHHHHHH-HHhccCcCeEEEEec
Q 029764           98 FDYAFVDADKDNYCNYHER-LMKLLKVGGIAVYDN  131 (188)
Q Consensus        98 ~D~i~id~~~~~~~~~~~~-~~~~L~~gG~lv~~~  131 (188)
                      .|+|+.....   ...+.. ..+.+++||.++.-.
T Consensus       258 aDVVI~atG~---~~~i~~~~l~~mk~GgilvnvG  289 (413)
T cd00401         258 GDIFVTTTGN---KDIITGEHFEQMKDGAIVCNIG  289 (413)
T ss_pred             CCEEEECCCC---HHHHHHHHHhcCCCCcEEEEeC
Confidence            7988864322   334554 478999999987654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=92.71  E-value=4.3  Score=33.39  Aligned_cols=124  Identities=20%  Similarity=0.226  Sum_probs=76.6

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeC-CchhHHHHHHHHHhcCCCCcEEEEEcchH
Q 029764            4 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDV-NRETYEIGLPIIKKAGVDHKINFIESEAL   82 (188)
Q Consensus         4 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~-~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   82 (188)
                      ..|.+..+=+.++.+..+..++-..||.+..+..+...++++.+|+..+. -.......++.+...|.  .+.+...+-.
T Consensus        53 gnPt~~~le~~la~Le~g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv--~v~~~d~~d~  130 (386)
T PF01053_consen   53 GNPTVRALEQRLAALEGGEDALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGV--EVTFVDPTDL  130 (386)
T ss_dssp             C-HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTS--EEEEESTTSH
T ss_pred             ccccHHHHHHHHHHhhcccceeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCc--EEEEeCchhH
Confidence            35777777788888888888999999888886666666666788888763 34455556666666664  3555544333


Q ss_pred             HHHHHHhhcccCCCceeEEEEeCC--ccchHHHHHHHHhccCcCe--EEEEecccc
Q 029764           83 SVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGG--IAVYDNTLW  134 (188)
Q Consensus        83 ~~~~~~~~~~~~~~~~D~i~id~~--~~~~~~~~~~~~~~L~~gG--~lv~~~~~~  134 (188)
                      +.+....     .....+||+...  +......++.+.++.++.|  .+++||++.
T Consensus       131 ~~l~~~l-----~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~a  181 (386)
T PF01053_consen  131 EALEAAL-----RPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFA  181 (386)
T ss_dssp             HHHHHHH-----CTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTT
T ss_pred             HHHHhhc-----cccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeecccc
Confidence            4333332     357899999853  3223345566666666665  566666553

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=92.67  E-value=0.91  Score=32.66  Aligned_cols=100  Identities=12%  Similarity=0.080  Sum_probs=58.2

Q ss_pred             EcccchHHHHHHHhhCCCCCEEEEEeC--CchhHH---HHHHHHHhcCCCCcEEEEE-cchHHHHHHHhhcccCCCceeE
Q 029764           27 IGVFTGYSLLLTALTIPEDGQITAIDV--NRETYE---IGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENEGSFDY  100 (188)
Q Consensus        27 iG~g~G~~~~~la~~~~~~~~v~~iD~--~~~~~~---~a~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~D~  100 (188)
                      +|=|-=+.+..|++......++++.-.  ..+..+   .+.++++.+. ...+.++. -|+.+....+.-   ....||.
T Consensus         3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~-~~g~~V~~~VDat~l~~~~~~---~~~~FDr   78 (166)
T PF10354_consen    3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELR-ELGVTVLHGVDATKLHKHFRL---KNQRFDR   78 (166)
T ss_pred             eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHh-hcCCccccCCCCCcccccccc---cCCcCCE
Confidence            455556778888887754556665544  333332   2335555442 12244333 466544332211   2478999


Q ss_pred             EEEeCCccc----------------hHHHHHHHHhccCcCeEEEEe
Q 029764          101 AFVDADKDN----------------YCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus       101 i~id~~~~~----------------~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      |+...++..                ...++..+.++|+++|.+.+.
T Consensus        79 IiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVT  124 (166)
T PF10354_consen   79 IIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVT  124 (166)
T ss_pred             EEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            998743322                346788888999999998884

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=92.67  E-value=3.4  Score=33.37  Aligned_cols=102  Identities=19%  Similarity=0.302  Sum_probs=59.9

Q ss_pred             HHcCCCEEEEEccc-chHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc--chHHHHHHHhhcc
Q 029764           17 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIES--EALSVLDQLLKYS   92 (188)
Q Consensus        17 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~   92 (188)
                      ...++.+||-.|+| .|..++.+|+..  +. ++++++.+++..+.+++    .|...-+.....  +..+.+.++.   
T Consensus       183 ~~~~g~~VlV~G~G~vG~~a~~~ak~~--G~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~v~~~~---  253 (368)
T cd08300         183 KVEPGSTVAVFGLGAVGLAVIQGAKAA--GASRIIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQVLVEMT---  253 (368)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHHHHHHHh---
Confidence            34567788888864 344556677765  44 79999999888776654    343211211111  1223333321   


Q ss_pred             cCCCceeEEEEeCCccchHHHHHHHHhccCcC-eEEEEecc
Q 029764           93 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNT  132 (188)
Q Consensus        93 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  132 (188)
                        .+.+|+|+-....   ...+....+.++++ |.++.-..
T Consensus       254 --~~g~d~vid~~g~---~~~~~~a~~~l~~~~G~~v~~g~  289 (368)
T cd08300         254 --DGGVDYTFECIGN---VKVMRAALEACHKGWGTSVIIGV  289 (368)
T ss_pred             --CCCCcEEEECCCC---hHHHHHHHHhhccCCCeEEEEcc
Confidence              2479988743221   24567778899887 88876543

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=92.64  E-value=2.9  Score=33.75  Aligned_cols=82  Identities=15%  Similarity=0.134  Sum_probs=47.3

Q ss_pred             HcCCCEEEEEcccc-hHHH-HHHHhhCCCCCEEEEEeCCc---------------------hhHHHHHHHHHhcCCCCcE
Q 029764           18 LVNAKKTIEIGVFT-GYSL-LLTALTIPEDGQITAIDVNR---------------------ETYEIGLPIIKKAGVDHKI   74 (188)
Q Consensus        18 ~~~~~~vLeiG~g~-G~~~-~~la~~~~~~~~v~~iD~~~---------------------~~~~~a~~~~~~~~~~~~~   74 (188)
                      ..+..+|+-+|||. |... ..|+.. . -++++.+|.+.                     ...+.+++.+...+-.-++
T Consensus        21 ~L~~~~VlIiG~GglGs~va~~La~a-G-vg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i   98 (338)
T PRK12475         21 KIREKHVLIVGAGALGAANAEALVRA-G-IGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEI   98 (338)
T ss_pred             hhcCCcEEEECCCHHHHHHHHHHHHc-C-CCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEE
Confidence            33557899999973 3322 223332 1 36899999864                     2345556666665533345


Q ss_pred             EEEEcchH-HHHHHHhhcccCCCceeEEEEeCCc
Q 029764           75 NFIESEAL-SVLDQLLKYSENEGSFDYAFVDADK  107 (188)
Q Consensus        75 ~~~~~d~~-~~~~~~~~~~~~~~~~D~i~id~~~  107 (188)
                      +.+..+.. +.+..+      ...+|+|+...+.
T Consensus        99 ~~~~~~~~~~~~~~~------~~~~DlVid~~D~  126 (338)
T PRK12475         99 VPVVTDVTVEELEEL------VKEVDLIIDATDN  126 (338)
T ss_pred             EEEeccCCHHHHHHH------hcCCCEEEEcCCC
Confidence            55655543 233343      3579998876543

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=92.44  E-value=0.79  Score=37.59  Aligned_cols=83  Identities=22%  Similarity=0.177  Sum_probs=50.4

Q ss_pred             CEEEEEcccchHHHHHHHhhCC--CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcccCCCc
Q 029764           22 KKTIEIGVFTGYSLLLTALTIP--EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGS   97 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~   97 (188)
                      ++||-||||  ..+...|..+.  .+.+|+..|-+++....+.+...     .+++.++-|+.+.  +..+.      .+
T Consensus         2 ~~ilviGaG--~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~li------~~   68 (389)
T COG1748           2 MKILVIGAG--GVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVALI------KD   68 (389)
T ss_pred             CcEEEECCc--hhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHHH------hc
Confidence            478999994  44444333321  13799999999888776665431     2677878777553  34443      55


Q ss_pred             eeEEEEeCCccchHHHHHHH
Q 029764           98 FDYAFVDADKDNYCNYHERL  117 (188)
Q Consensus        98 ~D~i~id~~~~~~~~~~~~~  117 (188)
                      +|+|+.-.+......+++.|
T Consensus        69 ~d~VIn~~p~~~~~~i~ka~   88 (389)
T COG1748          69 FDLVINAAPPFVDLTILKAC   88 (389)
T ss_pred             CCEEEEeCCchhhHHHHHHH
Confidence            69998765443333333333

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=92.37  E-value=3  Score=32.85  Aligned_cols=98  Identities=12%  Similarity=0.095  Sum_probs=54.7

Q ss_pred             CCCEEEEE--c-ccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           20 NAKKTIEI--G-VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        20 ~~~~vLei--G-~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      ++..++=+  | .+.|..++.+|+..  +.++++++.+++..+.+++    .|...-+.....+..+.+.++.    ...
T Consensus       142 ~~~~vlv~~~g~g~vG~~a~q~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~v~~~~----~~~  211 (324)
T cd08291         142 EGAKAVVHTAAASALGRMLVRLCKAD--GIKVINIVRRKEQVDLLKK----IGAEYVLNSSDPDFLEDLKELI----AKL  211 (324)
T ss_pred             CCCcEEEEccCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcEEEECCCccHHHHHHHHh----CCC
Confidence            34444443  3 34566677788765  5689999988887776654    3432212211223333333322    124


Q ss_pred             ceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           97 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        97 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      .+|+++-....    ......++.++++|.++.-.
T Consensus       212 ~~d~vid~~g~----~~~~~~~~~l~~~G~~v~~g  242 (324)
T cd08291         212 NATIFFDAVGG----GLTGQILLAMPYGSTLYVYG  242 (324)
T ss_pred             CCcEEEECCCc----HHHHHHHHhhCCCCEEEEEE
Confidence            68988743221    22345578889999987743

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=92.36  E-value=3.4  Score=32.85  Aligned_cols=101  Identities=20%  Similarity=0.235  Sum_probs=57.2

Q ss_pred             HcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           18 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        18 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      ..++.+||-.|+| .|..++.+|+... ..++++++.+++....+++    .+...-+.....+....+..+.    ...
T Consensus       164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~----~~~  234 (345)
T cd08286         164 VKPGDTVAIVGAGPVGLAALLTAQLYS-PSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELT----DGR  234 (345)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHh----CCC
Confidence            4456677666653 3344555666642 2678888888776665553    3432222322233323233332    135


Q ss_pred             ceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           97 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        97 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      .+|+++- ..  .....++.+.+.|+++|.++.-
T Consensus       235 ~~d~vld-~~--g~~~~~~~~~~~l~~~g~~v~~  265 (345)
T cd08286         235 GVDVVIE-AV--GIPATFELCQELVAPGGHIANV  265 (345)
T ss_pred             CCCEEEE-CC--CCHHHHHHHHHhccCCcEEEEe
Confidence            6998873 32  1233577888999999998853

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=92.36  E-value=2.8  Score=33.47  Aligned_cols=103  Identities=16%  Similarity=0.176  Sum_probs=60.4

Q ss_pred             HHcCCCEEEEEccc-chHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           17 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        17 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      ...++.+||-.|+| .|..++.+|+..  +. +|+.++.+++..+.+++    .+...-+.....+..+.+.++.    .
T Consensus       169 ~~~~g~~vlI~g~g~vG~~a~q~a~~~--G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~----~  238 (351)
T cd08233         169 GFKPGDTALVLGAGPIGLLTILALKAA--GASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLT----G  238 (351)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHh----C
Confidence            34566788888753 344556667664  45 78999888887776644    2432112222223333333331    1


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      ...+|+++-....   ...++.+++.|+++|.++.-..
T Consensus       239 ~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g~  273 (351)
T cd08233         239 GGGVDVSFDCAGV---QATLDTAIDALRPRGTAVNVAI  273 (351)
T ss_pred             CCCCCEEEECCCC---HHHHHHHHHhccCCCEEEEEcc
Confidence            2459998854321   2356778899999999887543

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=92.31  E-value=0.69  Score=36.46  Aligned_cols=67  Identities=13%  Similarity=-0.016  Sum_probs=48.9

Q ss_pred             EEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEE
Q 029764           23 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF  102 (188)
Q Consensus        23 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~  102 (188)
                      +++|+.||.|..+.-+-..-  -..+.++|+++.+.+..+.|+.        ....+|..++.....     ...+|+++
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag--~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l-----~~~~D~l~   66 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAG--FEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDL-----PKDVDLLI   66 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTT--EEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHH-----HHT-SEEE
T ss_pred             cEEEEccCccHHHHHHHhcC--cEEEEEeecCHHHHHhhhhccc--------ccccccccccccccc-----cccceEEE
Confidence            68999999999999887752  2468899999999998888873        677888876543321     11599998


Q ss_pred             Ee
Q 029764          103 VD  104 (188)
Q Consensus       103 id  104 (188)
                      ..
T Consensus        67 gg   68 (335)
T PF00145_consen   67 GG   68 (335)
T ss_dssp             EE
T ss_pred             ec
Confidence            65

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=92.31  E-value=4  Score=32.22  Aligned_cols=101  Identities=18%  Similarity=0.200  Sum_probs=60.4

Q ss_pred             HHHcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE-cchHHHHHHHhhccc
Q 029764           16 LRLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSE   93 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~   93 (188)
                      +...++.+||-.|+| .|..++.+|+... +.++++++.+++..+.+++    .+...-+.... .+..+.+...     
T Consensus       158 ~~~~~g~~vlV~g~g~vG~~~~~la~~~~-g~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~v~~~-----  227 (338)
T PRK09422        158 SGIKPGQWIAIYGAGGLGNLALQYAKNVF-NAKVIAVDINDDKLALAKE----VGADLTINSKRVEDVAKIIQEK-----  227 (338)
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHhC-CCeEEEEeCChHHHHHHHH----cCCcEEecccccccHHHHHHHh-----
Confidence            345566788888753 4556666777532 6689999999887777643    34321111111 1112222222     


Q ss_pred             CCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           94 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        94 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                       .+.+|.++.+...   ...++.+++.|+++|.++.-
T Consensus       228 -~~~~d~vi~~~~~---~~~~~~~~~~l~~~G~~v~~  260 (338)
T PRK09422        228 -TGGAHAAVVTAVA---KAAFNQAVDAVRAGGRVVAV  260 (338)
T ss_pred             -cCCCcEEEEeCCC---HHHHHHHHHhccCCCEEEEE
Confidence             2368877776432   34578889999999998864

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=92.11  E-value=3.1  Score=33.12  Aligned_cols=101  Identities=14%  Similarity=0.172  Sum_probs=58.4

Q ss_pred             HHcCCCEEEEEcccc-hHHHHHHHhhCCCCCE-EEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch---HHHHHHHhhc
Q 029764           17 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA---LSVLDQLLKY   91 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~   91 (188)
                      ...++.+||-.|+|. |..++.+|+..  +.+ ++.++.+++..+.+++    .+...-+.....+.   .+.+....  
T Consensus       159 ~~~~g~~vlI~g~g~vG~~a~~lak~~--G~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~~~~~~--  230 (343)
T cd05285         159 GVRPGDTVLVFGAGPIGLLTAAVAKAF--GATKVVVTDIDPSRLEFAKE----LGATHTVNVRTEDTPESAEKIAELL--  230 (343)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----cCCcEEeccccccchhHHHHHHHHh--
Confidence            445667777777654 66777788875  445 8888888777665544    23221111111121   12222221  


Q ss_pred             ccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           92 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        92 ~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                        ....+|+|+-....   ...+...++.|+++|.++.-
T Consensus       231 --~~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~  264 (343)
T cd05285         231 --GGKGPDVVIECTGA---ESCIQTAIYATRPGGTVVLV  264 (343)
T ss_pred             --CCCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEE
Confidence              13469988854322   22567778999999998864

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=92.04  E-value=1.1  Score=35.42  Aligned_cols=88  Identities=10%  Similarity=0.053  Sum_probs=53.8

Q ss_pred             CCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           20 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        20 ~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      ++.+++-+|+| .|..++.+|+... ...|+.+|.+++.++.+++.    .      .+  +..+.   .      ...+
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~---~------~~g~  201 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAG-GSPPAVWETNPRRRDGATGY----E------VL--DPEKD---P------RRDY  201 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHhhhhc----c------cc--Chhhc---c------CCCC
Confidence            55678888865 4566777777653 33577788887766554431    1      11  11110   0      2568


Q ss_pred             eEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764           99 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      |+||=....   ...++.+.+.++++|.+++-..
T Consensus       202 Dvvid~~G~---~~~~~~~~~~l~~~G~iv~~G~  232 (308)
T TIGR01202       202 RAIYDASGD---PSLIDTLVRRLAKGGEIVLAGF  232 (308)
T ss_pred             CEEEECCCC---HHHHHHHHHhhhcCcEEEEEee
Confidence            988743222   3456788899999999997543

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=91.99  E-value=4.4  Score=32.73  Aligned_cols=96  Identities=20%  Similarity=0.213  Sum_probs=54.6

Q ss_pred             cCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           19 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        19 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      .++.+||-.|+| .|..++.+|+..  +.+++.++.+++....+   .+..|..   .++.....+.+...      .+.
T Consensus       182 ~~g~~VlV~G~G~vG~~avq~Ak~~--Ga~vi~~~~~~~~~~~~---~~~~Ga~---~vi~~~~~~~~~~~------~~~  247 (360)
T PLN02586        182 EPGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISSSSNKEDEA---INRLGAD---SFLVSTDPEKMKAA------IGT  247 (360)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCcchhhhH---HHhCCCc---EEEcCCCHHHHHhh------cCC
Confidence            456788888875 445666677765  56788888776543222   1234432   12221111222222      135


Q ss_pred             eeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           98 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        98 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      +|++|-...   ....++.+++.|++||.++.-.
T Consensus       248 ~D~vid~~g---~~~~~~~~~~~l~~~G~iv~vG  278 (360)
T PLN02586        248 MDYIIDTVS---AVHALGPLLGLLKVNGKLITLG  278 (360)
T ss_pred             CCEEEECCC---CHHHHHHHHHHhcCCcEEEEeC
Confidence            898883222   2335677889999999988654

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=91.98  E-value=0.49  Score=33.97  Aligned_cols=44  Identities=16%  Similarity=0.040  Sum_probs=32.0

Q ss_pred             HcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHH
Q 029764           18 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLP   63 (188)
Q Consensus        18 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~   63 (188)
                      ..+|.+|+=+|.| .|..++.++..+  +.+++..|..++..+..+.
T Consensus        17 ~~~p~~vvv~G~G~vg~gA~~~~~~l--Ga~v~~~d~~~~~~~~~~~   61 (168)
T PF01262_consen   17 GVPPAKVVVTGAGRVGQGAAEIAKGL--GAEVVVPDERPERLRQLES   61 (168)
T ss_dssp             EE-T-EEEEESTSHHHHHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred             CCCCeEEEEECCCHHHHHHHHHHhHC--CCEEEeccCCHHHHHhhhc
Confidence            4567899999998 567788888887  5799999998876665444

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=91.98  E-value=3.1  Score=34.19  Aligned_cols=105  Identities=15%  Similarity=0.117  Sum_probs=60.6

Q ss_pred             HHcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE---cchHHHHHHHhhcc
Q 029764           17 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE---SEALSVLDQLLKYS   92 (188)
Q Consensus        17 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~   92 (188)
                      ...++.+||-.|+| .|..++.+|+... ...++.+|.+++.++.+++    .|..   .+..   .+..+.+.++.   
T Consensus       182 ~~~~g~~VlV~G~G~iG~~aiqlAk~~G-a~~vi~~d~~~~r~~~a~~----~Ga~---~v~~~~~~~~~~~v~~~~---  250 (393)
T TIGR02819       182 GVGPGSTVYIAGAGPVGLAAAASAQLLG-AAVVIVGDLNPARLAQARS----FGCE---TVDLSKDATLPEQIEQIL---  250 (393)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHH----cCCe---EEecCCcccHHHHHHHHc---
Confidence            34566777777764 3445566777653 2346667888777776665    3431   2221   12323333321   


Q ss_pred             cCCCceeEEEEeCCccc-----------hHHHHHHHHhccCcCeEEEEeccc
Q 029764           93 ENEGSFDYAFVDADKDN-----------YCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        93 ~~~~~~D~i~id~~~~~-----------~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                       ....+|++|-......           ....++.+.+.+++||.+++-...
T Consensus       251 -~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~  301 (393)
T TIGR02819       251 -GEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY  301 (393)
T ss_pred             -CCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence             1246898875432211           124678888999999999985543

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=91.91  E-value=6.3  Score=32.52  Aligned_cols=106  Identities=19%  Similarity=0.206  Sum_probs=62.3

Q ss_pred             CEEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcc--------
Q 029764           22 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS--------   92 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--------   92 (188)
                      .+|--+|-  |+.++.+|..+. .+.+|+++|+++..++....     |   ...+..-+....+......+        
T Consensus        10 ~~I~ViGL--GYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~-----G---~~~i~e~~~~~~v~~~v~~g~lraTtd~   79 (436)
T COG0677          10 ATIGVIGL--GYVGLPLAAAFASAGFKVIGVDINQKKVDKLNR-----G---ESYIEEPDLDEVVKEAVESGKLRATTDP   79 (436)
T ss_pred             eEEEEEcc--ccccHHHHHHHHHcCCceEeEeCCHHHHHHHhC-----C---cceeecCcHHHHHHHHHhcCCceEecCh
Confidence            56777776  565555554443 25799999999988775543     1   22333333322233322221        


Q ss_pred             cCCCceeEEEEeC----------CccchHHHHHHHHhccCcCeEEEEeccccCcc
Q 029764           93 ENEGSFDYAFVDA----------DKDNYCNYHERLMKLLKVGGIAVYDNTLWGGT  137 (188)
Q Consensus        93 ~~~~~~D~i~id~----------~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~  137 (188)
                      .+...-|++++.-          +.+......+.+.+.|++|-.+++..+.++|.
T Consensus        80 ~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGT  134 (436)
T COG0677          80 EELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGT  134 (436)
T ss_pred             hhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCc
Confidence            0112456666542          11223456677789999999999999998774

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=91.89  E-value=1.5  Score=34.57  Aligned_cols=88  Identities=18%  Similarity=0.138  Sum_probs=48.8

Q ss_pred             CEEEEEcccchHHHHHHHhhCCC-C--CEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           22 KKTIEIGVFTGYSLLLTALTIPE-D--GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~~-~--~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .+|.=||+|.  .+..++..+.. +  .+|+++|.+++..+.+++    .+...  . ...+..+.          ....
T Consensus         7 ~~I~IIG~G~--mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~~--~-~~~~~~~~----------~~~a   67 (307)
T PRK07502          7 DRVALIGIGL--IGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLGD--R-VTTSAAEA----------VKGA   67 (307)
T ss_pred             cEEEEEeeCH--HHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCCc--e-ecCCHHHH----------hcCC
Confidence            4688888764  33333333221 2  379999999887665543    23211  1 11221111          1457


Q ss_pred             eEEEEeCCccchHHHHHHHHhccCcCeEEE
Q 029764           99 DYAFVDADKDNYCNYHERLMKLLKVGGIAV  128 (188)
Q Consensus        99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv  128 (188)
                      |+|++.........+++.+.+.++++..++
T Consensus        68 DvViiavp~~~~~~v~~~l~~~l~~~~iv~   97 (307)
T PRK07502         68 DLVILCVPVGASGAVAAEIAPHLKPGAIVT   97 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHhhCCCCCEEE
Confidence            888887655555566666667777776544

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=91.80  E-value=3.4  Score=33.02  Aligned_cols=107  Identities=16%  Similarity=0.181  Sum_probs=64.6

Q ss_pred             HHHHcCCCEEEEEcccchH-HHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEE--EcchHHHHHHHhhc
Q 029764           15 LLRLVNAKKTIEIGVFTGY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI--ESEALSVLDQLLKY   91 (188)
Q Consensus        15 l~~~~~~~~vLeiG~g~G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~   91 (188)
                      .+...++.++.-+|.|.=. +.+.-|+... .++|++||++++..+.|++.    |..+-+...  .....+.+.+.-  
T Consensus       187 ~Akv~~GstvAVfGLG~VGLav~~Gaka~G-AsrIIgvDiN~~Kf~~ak~f----GaTe~iNp~d~~~~i~evi~EmT--  259 (375)
T KOG0022|consen  187 TAKVEPGSTVAVFGLGGVGLAVAMGAKAAG-ASRIIGVDINPDKFEKAKEF----GATEFINPKDLKKPIQEVIIEMT--  259 (375)
T ss_pred             hcccCCCCEEEEEecchHHHHHHHhHHhcC-cccEEEEecCHHHHHHHHhc----CcceecChhhccccHHHHHHHHh--
Confidence            4567788899999987533 3334444433 68999999999999888764    433222221  123445555542  


Q ss_pred             ccCCCceeEEEEeCCccchHHHHHHHHhccCcC-eEEEEecccc
Q 029764           92 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNTLW  134 (188)
Q Consensus        92 ~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~~~  134 (188)
                         ++.+|+-|=...   ....+.++....++| |.-++-.+..
T Consensus       260 ---dgGvDysfEc~G---~~~~m~~al~s~h~GwG~sv~iGv~~  297 (375)
T KOG0022|consen  260 ---DGGVDYSFECIG---NVSTMRAALESCHKGWGKSVVIGVAA  297 (375)
T ss_pred             ---cCCceEEEEecC---CHHHHHHHHHHhhcCCCeEEEEEecC
Confidence               578998884321   133455555666777 7655544443

>PRK08114 cystathionine beta-lyase; Provisional

Probab=91.78  E-value=6.5  Score=32.45  Aligned_cols=128  Identities=10%  Similarity=0.080  Sum_probs=74.6

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeC-CchhHHHHHHHHHhcCCCCcEEEEEcchH
Q 029764            4 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDV-NRETYEIGLPIIKKAGVDHKINFIESEAL   82 (188)
Q Consensus         4 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~-~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   82 (188)
                      .+|....+=..++.+..+...+-..+|++.....+...+.++.+|++.+. -.......++.+++.|.  ++.++.....
T Consensus        60 ~nPt~~~le~~la~LEg~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi--~v~~vd~~d~  137 (395)
T PRK08114         60 GTLTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGV--TTTWFDPLIG  137 (395)
T ss_pred             CChhHHHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCc--EEEEECCCCH
Confidence            35666667777777888888999999887776555544565778887653 33455566666666664  3555443222


Q ss_pred             HHHHHHhhcccCCCceeEEEEeCCc--cchHHHHHHHHhccCc---CeEEEEeccccCccc
Q 029764           83 SVLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLKV---GGIAVYDNTLWGGTV  138 (188)
Q Consensus        83 ~~~~~~~~~~~~~~~~D~i~id~~~--~~~~~~~~~~~~~L~~---gG~lv~~~~~~~g~~  138 (188)
                      +.+....     ...-.+|++....  ......++.+.++.+.   |-.+++|++...+..
T Consensus       138 ~~l~~~l-----~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~  193 (395)
T PRK08114        138 ADIAKLI-----QPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVL  193 (395)
T ss_pred             HHHHHhc-----CCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccc
Confidence            3333322     2345789888532  1111233444444444   457888887755443

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=91.78  E-value=4.6  Score=32.58  Aligned_cols=104  Identities=17%  Similarity=0.247  Sum_probs=58.6

Q ss_pred             HHHcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc--chHHHHHHHhhcc
Q 029764           16 LRLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES--EALSVLDQLLKYS   92 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~   92 (188)
                      ....++.+||-.|+| .|..++.+|+... ..++++++.+++..+.+++    .|...-+.....  +..+.+.++.   
T Consensus       183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~G-~~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~v~~~~---  254 (369)
T cd08301         183 AKVKKGSTVAIFGLGAVGLAVAEGARIRG-ASRIIGVDLNPSKFEQAKK----FGVTEFVNPKDHDKPVQEVIAEMT---  254 (369)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCceEEcccccchhHHHHHHHHh---
Confidence            345567788888864 3345556777643 2379999999887776644    343211211111  1222233321   


Q ss_pred             cCCCceeEEEEeCCccchHHHHHHHHhccCcC-eEEEEecc
Q 029764           93 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNT  132 (188)
Q Consensus        93 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  132 (188)
                        .+.+|+++-....   ...+....+.+++| |.+++-..
T Consensus       255 --~~~~d~vid~~G~---~~~~~~~~~~~~~~~g~~v~~g~  290 (369)
T cd08301         255 --GGGVDYSFECTGN---IDAMISAFECVHDGWGVTVLLGV  290 (369)
T ss_pred             --CCCCCEEEECCCC---hHHHHHHHHHhhcCCCEEEEECc
Confidence              2368877643211   33556677888996 88887543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=91.69  E-value=3  Score=33.61  Aligned_cols=101  Identities=19%  Similarity=0.223  Sum_probs=59.1

Q ss_pred             HHcCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764           17 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      ...++.+||-.|+|. |..++.+|+... ..++++++.+++....+++    .+...-+.....+..+.+..+.     .
T Consensus       183 ~~~~g~~vlI~g~g~vG~~~~~la~~~G-~~~v~~~~~~~~k~~~~~~----~g~~~~i~~~~~~~~~~v~~~~-----~  252 (365)
T cd08278         183 KPRPGSSIAVFGAGAVGLAAVMAAKIAG-CTTIIAVDIVDSRLELAKE----LGATHVINPKEEDLVAAIREIT-----G  252 (365)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCcEEecCCCcCHHHHHHHHh-----C
Confidence            345667888887643 566677777753 2369999998877665544    2321111111112223333321     2


Q ss_pred             CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ..+|+|+-....   ...+..+++.++++|.++.-
T Consensus       253 ~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~  284 (365)
T cd08278         253 GGVDYALDTTGV---PAVIEQAVDALAPRGTLALV  284 (365)
T ss_pred             CCCcEEEECCCC---cHHHHHHHHHhccCCEEEEe
Confidence            568988753322   23567788999999988864

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=91.63  E-value=4.6  Score=30.47  Aligned_cols=83  Identities=12%  Similarity=0.141  Sum_probs=45.3

Q ss_pred             HcCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCC-------------------chhHHHHHHHHHhcCCCCcEEEE
Q 029764           18 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVN-------------------RETYEIGLPIIKKAGVDHKINFI   77 (188)
Q Consensus        18 ~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~-------------------~~~~~~a~~~~~~~~~~~~~~~~   77 (188)
                      .....+|+-+|||. |...+..+.... -++++.+|.+                   ....+.+++.+.+.+-.-+++.+
T Consensus        18 ~L~~~~VlivG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~   96 (228)
T cd00757          18 KLKNARVLVVGAGGLGSPAAEYLAAAG-VGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY   96 (228)
T ss_pred             HHhCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence            33457899999973 433333222222 4688888653                   23445566666665533345555


Q ss_pred             Ecch-HHHHHHHhhcccCCCceeEEEEeCCc
Q 029764           78 ESEA-LSVLDQLLKYSENEGSFDYAFVDADK  107 (188)
Q Consensus        78 ~~d~-~~~~~~~~~~~~~~~~~D~i~id~~~  107 (188)
                      .... .+.+..+      ...+|+|+...+.
T Consensus        97 ~~~i~~~~~~~~------~~~~DvVi~~~d~  121 (228)
T cd00757          97 NERLDAENAEEL------IAGYDLVLDCTDN  121 (228)
T ss_pred             cceeCHHHHHHH------HhCCCEEEEcCCC
Confidence            4443 1223333      2569999876543

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=91.58  E-value=0.12  Score=34.29  Aligned_cols=40  Identities=20%  Similarity=0.494  Sum_probs=27.6

Q ss_pred             ceeEEEEeCC---------ccchHHHHHHHHhccCcCeEEEEeccccCc
Q 029764           97 SFDYAFVDAD---------KDNYCNYHERLMKLLKVGGIAVYDNTLWGG  136 (188)
Q Consensus        97 ~~D~i~id~~---------~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  136 (188)
                      .||+|++=..         ......+++.+..+|+|||.+|+.--.|..
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~s   49 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKS   49 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHH
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHH
Confidence            4899986531         234567999999999999999997666533

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=91.54  E-value=0.99  Score=34.96  Aligned_cols=74  Identities=16%  Similarity=0.148  Sum_probs=46.6

Q ss_pred             HHHHHHHHH---HcCCCEEEEEcccchHHHHHHHhhCC----CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch
Q 029764            9 GQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIP----EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   81 (188)
Q Consensus         9 ~~~l~~l~~---~~~~~~vLeiG~g~G~~~~~la~~~~----~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   81 (188)
                      +.++..+..   ..+...++|.|||.|..+.+++..++    +...++.||-.....+.-+. +........++-+..|.
T Consensus         4 sSli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~-~~~~~~~~~~~R~riDI   82 (259)
T PF05206_consen    4 SSLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNK-IRKDESEPKFERLRIDI   82 (259)
T ss_pred             HHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhh-hhccCCCCceEEEEEEe
Confidence            344554443   24566899999999999999999884    25789999986554433332 33322112355555565


Q ss_pred             HH
Q 029764           82 LS   83 (188)
Q Consensus        82 ~~   83 (188)
                      .+
T Consensus        83 ~d   84 (259)
T PF05206_consen   83 KD   84 (259)
T ss_pred             ec
Confidence            55

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=91.45  E-value=0.44  Score=37.85  Aligned_cols=77  Identities=19%  Similarity=0.331  Sum_probs=51.1

Q ss_pred             EEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH-HHHHhhcccCCCceeEEE
Q 029764           25 IEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-LDQLLKYSENEGSFDYAF  102 (188)
Q Consensus        25 LeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~D~i~  102 (188)
                      +|||+  |.+.++-+... ..+-..+++|++......|+.+..+++++..+.+++.+..+. +..-... .....||++.
T Consensus       107 iDIgt--gasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~-~~e~~ydFcM  183 (419)
T KOG2912|consen  107 IDIGT--GASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKE-ESEIIYDFCM  183 (419)
T ss_pred             eeccC--chhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhcc-CccceeeEEe
Confidence            67777  55555544332 224678999999999999999999999998888887766542 2221111 1133577777


Q ss_pred             Ee
Q 029764          103 VD  104 (188)
Q Consensus       103 id  104 (188)
                      ++
T Consensus       184 cN  185 (419)
T KOG2912|consen  184 CN  185 (419)
T ss_pred             cC
Confidence            65

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=91.44  E-value=6.1  Score=31.40  Aligned_cols=97  Identities=22%  Similarity=0.130  Sum_probs=52.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCC--CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIP--EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      .++.+|+-+|+  |..+..+++.+.  ...+|+.++.+++......+.   .+.    ....  ..+. .+.      ..
T Consensus       176 l~~~~V~ViGa--G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~---~g~----~~~~--~~~~-~~~------l~  237 (311)
T cd05213         176 LKGKKVLVIGA--GEMGELAAKHLAAKGVAEITIANRTYERAEELAKE---LGG----NAVP--LDEL-LEL------LN  237 (311)
T ss_pred             ccCCEEEEECc--HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH---cCC----eEEe--HHHH-HHH------Hh
Confidence            46789999998  555544444332  135788899987654332222   232    2222  1122 222      24


Q ss_pred             ceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           97 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        97 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      .+|+||.......+...+.......+.++.+++|-..
T Consensus       238 ~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlav  274 (311)
T cd05213         238 EADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAV  274 (311)
T ss_pred             cCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCC
Confidence            6899998765444434444444433345777776554

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=91.38  E-value=3.1  Score=28.00  Aligned_cols=89  Identities=12%  Similarity=0.044  Sum_probs=56.2

Q ss_pred             HHHHHHHcCCCEEEEEcccchH-HHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhh
Q 029764           12 MAMLLRLVNAKKTIEIGVFTGY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK   90 (188)
Q Consensus        12 l~~l~~~~~~~~vLeiG~g~G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   90 (188)
                      ...++......+|+|+|-|.=. .+..+++.   +..++++|+++.   .+       +  ..+.+...|..+---.+  
T Consensus         5 a~~iAre~~~gkVvEVGiG~~~~VA~~L~e~---g~dv~atDI~~~---~a-------~--~g~~~v~DDitnP~~~i--   67 (129)
T COG1255           5 AEYIARENARGKVVEVGIGFFLDVAKRLAER---GFDVLATDINEK---TA-------P--EGLRFVVDDITNPNISI--   67 (129)
T ss_pred             HHHHHHHhcCCcEEEEccchHHHHHHHHHHc---CCcEEEEecccc---cC-------c--ccceEEEccCCCccHHH--
Confidence            3445566777799999986543 44555553   679999999876   11       1  23778888876532222  


Q ss_pred             cccCCCceeEEEEeCCccchHHHHHHHHhcc
Q 029764           91 YSENEGSFDYAFVDADKDNYCNYHERLMKLL  121 (188)
Q Consensus        91 ~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L  121 (188)
                          =...|+|+.--++......+-.+.+.+
T Consensus        68 ----Y~~A~lIYSiRpppEl~~~ildva~aV   94 (129)
T COG1255          68 ----YEGADLIYSIRPPPELQSAILDVAKAV   94 (129)
T ss_pred             ----hhCccceeecCCCHHHHHHHHHHHHhh
Confidence                257899998765555555444444433

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=91.33  E-value=5.1  Score=32.32  Aligned_cols=103  Identities=20%  Similarity=0.338  Sum_probs=59.0

Q ss_pred             HHcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc--chHHHHHHHhhccc
Q 029764           17 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES--EALSVLDQLLKYSE   93 (188)
Q Consensus        17 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~~   93 (188)
                      ...++.+||-+|+| .|..++.+|+... ..+|++++.+++..+.+++    .+...-+.....  +..+.+..+.    
T Consensus       181 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~----  251 (365)
T cd08277         181 KVEPGSTVAVFGLGAVGLSAIMGAKIAG-ASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMT----  251 (365)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHh----
Confidence            34567788888864 3445566777653 2379999998887776654    343211111111  1122233321    


Q ss_pred             CCCceeEEEEeCCccchHHHHHHHHhccCcC-eEEEEecc
Q 029764           94 NEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNT  132 (188)
Q Consensus        94 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  132 (188)
                       ...+|+|+-....   ...+...++.++++ |.++.-..
T Consensus       252 -~~g~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~g~  287 (365)
T cd08277         252 -GGGVDYSFECTGN---ADLMNEALESTKLGWGVSVVVGV  287 (365)
T ss_pred             -CCCCCEEEECCCC---hHHHHHHHHhcccCCCEEEEEcC
Confidence             2468988743221   24567778889885 88876443

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=91.30  E-value=0.68  Score=36.67  Aligned_cols=110  Identities=16%  Similarity=0.194  Sum_probs=65.7

Q ss_pred             CEEEEEcccchHHHHHHHhhCC-------------------CCCEEEEEeCCc--hhHHHHHHHHHhc------------
Q 029764           22 KKTIEIGVFTGYSLLLTALTIP-------------------EDGQITAIDVNR--ETYEIGLPIIKKA------------   68 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~-------------------~~~~v~~iD~~~--~~~~~a~~~~~~~------------   68 (188)
                      .+||-||.|.|.-.+.+|..+.                   +...++.||+.+  ..++.....+...            
T Consensus        88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~  167 (315)
T PF11312_consen   88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW  167 (315)
T ss_pred             ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence            6999999999988777777661                   114899999844  2333333333322            


Q ss_pred             CC--C--CcEEEEEcchHHHHH-HHhhcccCCCceeEEEE--------eCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764           69 GV--D--HKINFIESEALSVLD-QLLKYSENEGSFDYAFV--------DADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        69 ~~--~--~~~~~~~~d~~~~~~-~~~~~~~~~~~~D~i~i--------d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      ..  +  -++.|.+.|+..... ++... ......++|-+        .........++..+-..+++|.++++.|.
T Consensus       168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~l-l~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS  243 (315)
T PF11312_consen  168 PLIEPDRFNVSFTQQDVLSLSEDDLKSL-LGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS  243 (315)
T ss_pred             ccCCccceeeeEEecccccCChHHHHHH-hccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence            00  1  146788888765322 11100 00124566511        12244556888899999999999888653

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=91.23  E-value=3.5  Score=28.24  Aligned_cols=81  Identities=20%  Similarity=0.221  Sum_probs=47.4

Q ss_pred             CCEEEEEccc-chHHHHH-HHhhCCCCCEEEEEeCCc-------------------hhHHHHHHHHHhcCCCCcEEEEEc
Q 029764           21 AKKTIEIGVF-TGYSLLL-TALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIES   79 (188)
Q Consensus        21 ~~~vLeiG~g-~G~~~~~-la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~   79 (188)
                      ..+|+=+|+| .|...+. |+.. . -++++.+|.+.                   ...+.+++.+.+.+..-+++.+..
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~-G-v~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~   79 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARS-G-VGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPE   79 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHH-T-TSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEES
T ss_pred             CCEEEEECcCHHHHHHHHHHHHh-C-CCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeec
Confidence            4689999996 4443333 3332 2 46889888632                   344566777776554445666666


Q ss_pred             ch-HHHHHHHhhcccCCCceeEEEEeCCccc
Q 029764           80 EA-LSVLDQLLKYSENEGSFDYAFVDADKDN  109 (188)
Q Consensus        80 d~-~~~~~~~~~~~~~~~~~D~i~id~~~~~  109 (188)
                      +. .+....+.      ..+|+|+...+...
T Consensus        80 ~~~~~~~~~~~------~~~d~vi~~~d~~~  104 (135)
T PF00899_consen   80 KIDEENIEELL------KDYDIVIDCVDSLA  104 (135)
T ss_dssp             HCSHHHHHHHH------HTSSEEEEESSSHH
T ss_pred             ccccccccccc------cCCCEEEEecCCHH
Confidence            65 23444442      57899987654433

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=91.17  E-value=0.42  Score=36.06  Aligned_cols=58  Identities=12%  Similarity=-0.021  Sum_probs=45.3

Q ss_pred             CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029764           22 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   83 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   83 (188)
                      .-|+|||.|.|..+..+..+-  ..++..+|.++.++.-.+-..+...  .+..++++|+..
T Consensus        52 ~~v~eIgPgpggitR~il~a~--~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~LR  109 (326)
T KOG0821|consen   52 AYVYEIGPGPGGITRSILNAD--VARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDVLR  109 (326)
T ss_pred             ceeEEecCCCCchhHHHHhcc--hhheeeeeeccccChHHHHHhhcCC--cceEEeccccce
Confidence            469999999999999998763  3589999999998887766555433  367888888764

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=91.05  E-value=1.1  Score=34.50  Aligned_cols=74  Identities=20%  Similarity=0.256  Sum_probs=45.6

Q ss_pred             HHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCccchHHHHH
Q 029764           36 LLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHE  115 (188)
Q Consensus        36 ~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~  115 (188)
                      ..+.+..+ ..+|+++|.+++.++.|++.    |..+   -...+ .+.   +       ..+|+|++..+......+++
T Consensus         3 ~aL~~~g~-~~~v~g~d~~~~~~~~a~~~----g~~~---~~~~~-~~~---~-------~~~DlvvlavP~~~~~~~l~   63 (258)
T PF02153_consen    3 LALRKAGP-DVEVYGYDRDPETLEAALEL----GIID---EASTD-IEA---V-------EDADLVVLAVPVSAIEDVLE   63 (258)
T ss_dssp             HHHHHTTT-TSEEEEE-SSHHHHHHHHHT----TSSS---EEESH-HHH---G-------GCCSEEEE-S-HHHHHHHHH
T ss_pred             HHHHhCCC-CeEEEEEeCCHHHHHHHHHC----CCee---eccCC-HhH---h-------cCCCEEEEcCCHHHHHHHHH
Confidence            34444433 68999999999987766542    4332   12222 222   1       45699999888878888888


Q ss_pred             HHHhccCcCeEEE
Q 029764          116 RLMKLLKVGGIAV  128 (188)
Q Consensus       116 ~~~~~L~~gG~lv  128 (188)
                      ++.+.+++|++++
T Consensus        64 ~~~~~~~~~~iv~   76 (258)
T PF02153_consen   64 EIAPYLKPGAIVT   76 (258)
T ss_dssp             HHHCGS-TTSEEE
T ss_pred             HhhhhcCCCcEEE
Confidence            8888888876554

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=91.03  E-value=4.3  Score=32.66  Aligned_cols=99  Identities=21%  Similarity=0.266  Sum_probs=56.4

Q ss_pred             cCCCEEEEEccc-chHHHHHHHhhCCCCCE-EEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           19 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        19 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      .++.+||-.|+| .|..+..+|+..  +.+ +++++.+++..+.+++    .+...-+.....+..+.+....    ...
T Consensus       186 ~~g~~VlI~g~g~vG~~~~~lak~~--G~~~vi~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~----~~~  255 (367)
T cd08263         186 RPGETVAVIGVGGVGSSAIQLAKAF--GASPIIAVDVRDEKLAKAKE----LGATHTVNAAKEDAVAAIREIT----GGR  255 (367)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHH----hCCceEecCCcccHHHHHHHHh----CCC
Confidence            456677777664 555666677765  445 8888888777665543    2432111111112222222221    135


Q ss_pred             ceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           97 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        97 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      .+|+|+-.....   ..+..+++.|+++|.++.-
T Consensus       256 ~~d~vld~vg~~---~~~~~~~~~l~~~G~~v~~  286 (367)
T cd08263         256 GVDVVVEALGKP---ETFKLALDVVRDGGRAVVV  286 (367)
T ss_pred             CCCEEEEeCCCH---HHHHHHHHHHhcCCEEEEE
Confidence            699998432221   3567788999999988763

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=91.01  E-value=3.6  Score=32.46  Aligned_cols=87  Identities=14%  Similarity=0.093  Sum_probs=47.1

Q ss_pred             EEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCc-------------------hhHHHHHHHHHhcCCCCcEEEEEcchH
Q 029764           23 KTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIESEAL   82 (188)
Q Consensus        23 ~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~d~~   82 (188)
                      +||-+||| .|...+..+.... -++++.+|.+.                   ...+.|.+.+.+.+-.-+++.+..+..
T Consensus         1 kVlVVGaGGlG~eilknLal~G-vg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~   79 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSG-FRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQ   79 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccC
Confidence            47888886 3433333222222 46888888532                   233455566665553345666666554


Q ss_pred             HHHHHHhhcccCCCceeEEEEeCCccchHHHHHH
Q 029764           83 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHER  116 (188)
Q Consensus        83 ~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~  116 (188)
                      +...++      ..+||+|+...+......++..
T Consensus        80 ~~~~~f------~~~fdvVi~alDn~~aR~~in~  107 (291)
T cd01488          80 DKDEEF------YRQFNIIICGLDSIEARRWING  107 (291)
T ss_pred             chhHHH------hcCCCEEEECCCCHHHHHHHHH
Confidence            443344      3689999876543333334444

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=91.00  E-value=2  Score=33.94  Aligned_cols=98  Identities=10%  Similarity=-0.004  Sum_probs=53.9

Q ss_pred             CEEEEEccc--chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764           22 KKTIEIGVF--TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   99 (188)
Q Consensus        22 ~~vLeiG~g--~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   99 (188)
                      .+|+=+|+|  .|+.+..|++.   +..|+.++-.++.++..++.   .|+    .+.........+.........+.||
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~---G~~V~lv~r~~~~~~~i~~~---~Gl----~i~~~g~~~~~~~~~~~~~~~~~~D   72 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARA---GLPVRLILRDRQRLAAYQQA---GGL----TLVEQGQASLYAIPAETADAAEPIH   72 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhC---CCCeEEEEechHHHHHHhhc---CCe----EEeeCCcceeeccCCCCcccccccC
Confidence            368888886  23455555553   46788998876555444331   121    1111000000000000000135899


Q ss_pred             EEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764          100 YAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus       100 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      +||+..-..+..+.++.+.+.+.++..+++
T Consensus        73 ~viv~vK~~~~~~al~~l~~~l~~~t~vv~  102 (305)
T PRK05708         73 RLLLACKAYDAEPAVASLAHRLAPGAELLL  102 (305)
T ss_pred             EEEEECCHHhHHHHHHHHHhhCCCCCEEEE
Confidence            999986555567788888899999987654

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=90.87  E-value=1.2  Score=37.38  Aligned_cols=96  Identities=16%  Similarity=0.137  Sum_probs=62.7

Q ss_pred             EEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEE
Q 029764           23 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF  102 (188)
Q Consensus        23 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~  102 (188)
                      +++.+|||.-..+..+-...  -..|+.+|.|+-.++.....-..  -..-..+...|.....  +     ++++||+++
T Consensus        51 ~~l~lGCGNS~l~e~ly~~G--~~dI~~iD~S~V~V~~m~~~~~~--~~~~~~~~~~d~~~l~--f-----edESFdiVI  119 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKNG--FEDITNIDSSSVVVAAMQVRNAK--ERPEMQMVEMDMDQLV--F-----EDESFDIVI  119 (482)
T ss_pred             eeEeecCCCCHHHHHHHhcC--CCCceeccccHHHHHHHHhcccc--CCcceEEEEecchhcc--C-----CCcceeEEE
Confidence            79999998776666655432  24799999999887766543221  1234667777765532  2     257788776


Q ss_pred             EeC-------------CccchHHHHHHHHhccCcCeEEEE
Q 029764          103 VDA-------------DKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus       103 id~-------------~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      .-+             +..+....+....+++++||..+.
T Consensus       120 dkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s  159 (482)
T KOG2352|consen  120 DKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS  159 (482)
T ss_pred             ecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence            321             122345667888899999998554

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=90.84  E-value=9.2  Score=32.41  Aligned_cols=102  Identities=17%  Similarity=0.117  Sum_probs=54.9

Q ss_pred             EEEEEcccchHHHHH--HHhhCCCCCEEEEEeCCchhHHHHHHHHHh---cCCC--------CcEEEEEcchHHHHHHHh
Q 029764           23 KTIEIGVFTGYSLLL--TALTIPEDGQITAIDVNRETYEIGLPIIKK---AGVD--------HKINFIESEALSVLDQLL   89 (188)
Q Consensus        23 ~vLeiG~g~G~~~~~--la~~~~~~~~v~~iD~~~~~~~~a~~~~~~---~~~~--------~~~~~~~~d~~~~~~~~~   89 (188)
                      +|.-+|+|.......  ||..- .+.+|+++|.+++.++..++....   .++.        .++.+ ..|..+.     
T Consensus         3 ~I~ViG~GyvGl~~A~~lA~~g-~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~-t~~~~~~-----   75 (473)
T PLN02353          3 KICCIGAGYVGGPTMAVIALKC-PDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFF-STDVEKH-----   75 (473)
T ss_pred             EEEEECCCHHHHHHHHHHHhcC-CCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEE-EcCHHHH-----
Confidence            467778765443333  33221 146799999999987765542100   0000        01111 1111111     


Q ss_pred             hcccCCCceeEEEEeCC--c-------------cchHHHHHHHHhccCcCeEEEEeccccCc
Q 029764           90 KYSENEGSFDYAFVDAD--K-------------DNYCNYHERLMKLLKVGGIAVYDNTLWGG  136 (188)
Q Consensus        90 ~~~~~~~~~D~i~id~~--~-------------~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  136 (188)
                           -...|++|+.-+  .             .......+.+.+.|++|-.+|+..+...|
T Consensus        76 -----i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~G  132 (473)
T PLN02353         76 -----VAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVK  132 (473)
T ss_pred             -----HhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCC
Confidence                 135688877521  1             12345667777889988888887777655

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.80  E-value=6.5  Score=30.60  Aligned_cols=93  Identities=18%  Similarity=0.160  Sum_probs=54.0

Q ss_pred             CEEEEEcccc--hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHH-------HhcCC-C--------CcEEEEEcchHH
Q 029764           22 KKTIEIGVFT--GYSLLLTALTIPEDGQITAIDVNRETYEIGLPII-------KKAGV-D--------HKINFIESEALS   83 (188)
Q Consensus        22 ~~vLeiG~g~--G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~-------~~~~~-~--------~~~~~~~~d~~~   83 (188)
                      ++|--||+|.  +..+..++..   +.+|+.+|.+++.++.+++.+       .+.+. .        .++.+ ..|. +
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~---g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~-~   78 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVA---GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDL-D   78 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHC---CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCH-H
Confidence            3577788862  2333334432   568999999999887655332       22221 1        02221 2221 1


Q ss_pred             HHHHHhhcccCCCceeEEEEeCCccc--hHHHHHHHHhccCcCeEEEE
Q 029764           84 VLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        84 ~~~~~~~~~~~~~~~D~i~id~~~~~--~~~~~~~~~~~L~~gG~lv~  129 (188)
                         .       ....|+|+.......  ...+++.+.+.++++..++.
T Consensus        79 ---~-------~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s  116 (282)
T PRK05808         79 ---D-------LKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILAT  116 (282)
T ss_pred             ---H-------hccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEE
Confidence               1       156799998754322  25788888888998887743

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=90.59  E-value=2.9  Score=34.25  Aligned_cols=105  Identities=12%  Similarity=0.040  Sum_probs=65.9

Q ss_pred             HHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCc-EEEEEcchHHHHHHHh
Q 029764           11 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK-INFIESEALSVLDQLL   89 (188)
Q Consensus        11 ~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~-~~~~~~d~~~~~~~~~   89 (188)
                      +|..+.......+|+-++=..|..+++++.+-+     +.+--+--.....++|++.++++.. ++++...  +.   + 
T Consensus        35 ll~~~~~~~~~~~~~i~nd~fGal~~~l~~~~~-----~~~~ds~~~~~~~~~n~~~n~~~~~~~~~~~~~--~~---~-  103 (378)
T PRK15001         35 LLQQLDDTEIRGPVLILNDAFGALSCALAEHKP-----YSIGDSYISELATRENLRLNGIDESSVKFLDST--AD---Y-  103 (378)
T ss_pred             HHHHHhhcccCCCEEEEcCchhHHHHHHHhCCC-----CeeehHHHHHHHHHHHHHHcCCCcccceeeccc--cc---c-
Confidence            445554433223799999999999999995422     2221122233455778888887643 5544322  22   2 


Q ss_pred             hcccCCCceeEEEEeCCcc--chHHHHHHHHhccCcCeEEEEec
Q 029764           90 KYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        90 ~~~~~~~~~D~i~id~~~~--~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                           .+.+|+|++-.++.  .....+..+.+.|.+|+.+++-.
T Consensus       104 -----~~~~d~vl~~~PK~~~~l~~~l~~l~~~l~~~~~ii~g~  142 (378)
T PRK15001        104 -----PQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGA  142 (378)
T ss_pred             -----cCCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence                 35699999876543  34456677788999999987643

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=90.58  E-value=6.8  Score=32.67  Aligned_cols=103  Identities=21%  Similarity=0.295  Sum_probs=60.1

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHh---cCC-----CCcEEEEEcchHHHHHHHhhc
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK---AGV-----DHKINFIESEALSVLDQLLKY   91 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~---~~~-----~~~~~~~~~d~~~~~~~~~~~   91 (188)
                      ++.+|-=||.  |+.+..+|..+..+.+|+++|++++.++..++-...   .++     ..+..+ ..+. +.       
T Consensus         5 ~~mkI~vIGl--GyvGlpmA~~la~~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~-t~~~-~~-------   73 (425)
T PRK15182          5 DEVKIAIIGL--GYVGLPLAVEFGKSRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKF-TSEI-EK-------   73 (425)
T ss_pred             CCCeEEEECc--CcchHHHHHHHhcCCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeE-EeCH-HH-------
Confidence            3456777766  777777777776567899999999887766521100   000     001111 1111 11       


Q ss_pred             ccCCCceeEEEEeCCc-------cc---hHHHHHHHHhccCcCeEEEEeccccCc
Q 029764           92 SENEGSFDYAFVDADK-------DN---YCNYHERLMKLLKVGGIAVYDNTLWGG  136 (188)
Q Consensus        92 ~~~~~~~D~i~id~~~-------~~---~~~~~~~~~~~L~~gG~lv~~~~~~~g  136 (188)
                         ....|++|+.-+.       .+   .....+.+.+.|++|.++|...+..+|
T Consensus        74 ---~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pg  125 (425)
T PRK15182         74 ---IKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPG  125 (425)
T ss_pred             ---HcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCc
Confidence               1467888876321       12   223345667889999888887777644

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=90.53  E-value=4.6  Score=32.01  Aligned_cols=98  Identities=14%  Similarity=0.085  Sum_probs=57.2

Q ss_pred             HHcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764           17 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        17 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      ...++.+||-.|+| .|..+..+|+..  +.+++.++.+++..+.+++    .|...-+.....+..+.+..       .
T Consensus       160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~-------~  226 (333)
T cd08296         160 GAKPGDLVAVQGIGGLGHLAVQYAAKM--GFRTVAISRGSDKADLARK----LGAHHYIDTSKEDVAEALQE-------L  226 (333)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----cCCcEEecCCCccHHHHHHh-------c
Confidence            44556788888853 344556677764  5689999988877666643    34321111111222222222       1


Q ss_pred             CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ..+|+++-...   ....++..++.|+++|.++.-
T Consensus       227 ~~~d~vi~~~g---~~~~~~~~~~~l~~~G~~v~~  258 (333)
T cd08296         227 GGAKLILATAP---NAKAISALVGGLAPRGKLLIL  258 (333)
T ss_pred             CCCCEEEECCC---chHHHHHHHHHcccCCEEEEE
Confidence            45898874211   134567788999999988864

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=90.50  E-value=4.1  Score=33.86  Aligned_cols=94  Identities=14%  Similarity=0.071  Sum_probs=57.3

Q ss_pred             CCEEEEEcccchHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcccCCCc
Q 029764           21 AKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGS   97 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~   97 (188)
                      .++++=+|+  |..+..+++.+.. +..++.+|.+++.++.+++..      ..+.++.+|+.+.  +...     ....
T Consensus       231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~~~L~~~-----~~~~  297 (453)
T PRK09496        231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQELLEEE-----GIDE  297 (453)
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCHHHHHhc-----CCcc
Confidence            467998877  7777777776643 578999999999877666542      2356788887543  3222     2457


Q ss_pred             eeEEEEeCCccchHHHHHHHHhccCcCeEE
Q 029764           98 FDYAFVDADKDNYCNYHERLMKLLKVGGIA  127 (188)
Q Consensus        98 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~l  127 (188)
                      +|.+++..+.....-....+.+.+.+.-++
T Consensus       298 a~~vi~~~~~~~~n~~~~~~~~~~~~~~ii  327 (453)
T PRK09496        298 ADAFIALTNDDEANILSSLLAKRLGAKKVI  327 (453)
T ss_pred             CCEEEECCCCcHHHHHHHHHHHHhCCCeEE
Confidence            888887543322222223333445444333

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=90.40  E-value=0.94  Score=36.09  Aligned_cols=65  Identities=9%  Similarity=-0.072  Sum_probs=46.5

Q ss_pred             EEEEcccchHHHHHHHhhCCCCCE-EEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEE
Q 029764           24 TIEIGVFTGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF  102 (188)
Q Consensus        24 vLeiG~g~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~  102 (188)
                      |+|+.||.|..+.-+-.+   +.+ +.++|+++.+.+..+.|+.     +  .++.+|..++...-      ...+|+++
T Consensus         1 vidLF~G~GG~~~Gl~~a---G~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di~~~~~~~------~~~~dvl~   64 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQA---GFKCVFASEIDKYAQKTYEANFG-----N--KVPFGDITKISPSD------IPDFDILL   64 (315)
T ss_pred             CEEEecCccHHHHHHHHc---CCeEEEEEeCCHHHHHHHHHhCC-----C--CCCccChhhhhhhh------CCCcCEEE
Confidence            589999999998888664   444 5679999999888887752     2  34567876654321      25689987


Q ss_pred             Ee
Q 029764          103 VD  104 (188)
Q Consensus       103 id  104 (188)
                      ..
T Consensus        65 gg   66 (315)
T TIGR00675        65 GG   66 (315)
T ss_pred             ec
Confidence            65

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=90.36  E-value=1.6  Score=35.18  Aligned_cols=96  Identities=11%  Similarity=-0.009  Sum_probs=55.7

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHh-cCCC------CcEEEEEcchHHHHHHHhhcc
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK-AGVD------HKINFIESEALSVLDQLLKYS   92 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-~~~~------~~~~~~~~d~~~~~~~~~~~~   92 (188)
                      ...+|.=||+|.-..++  |..+...+.++....+++..+..++.-.. ..+.      .++.. ..|..+.        
T Consensus         6 ~~mkI~IiGaGa~G~al--A~~La~~g~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~-t~d~~~a--------   74 (341)
T PRK12439          6 REPKVVVLGGGSWGTTV--ASICARRGPTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRA-TTDFAEA--------   74 (341)
T ss_pred             CCCeEEEECCCHHHHHH--HHHHHHCCCEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEE-ECCHHHH--------
Confidence            44578889986544433  33222233667777777776666543110 0111      12221 2232221        


Q ss_pred             cCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEE
Q 029764           93 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV  128 (188)
Q Consensus        93 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv  128 (188)
                        ....|+|++..........++.+.+.++++..++
T Consensus        75 --~~~aDlVilavps~~~~~vl~~i~~~l~~~~~vI  108 (341)
T PRK12439         75 --ANCADVVVMGVPSHGFRGVLTELAKELRPWVPVV  108 (341)
T ss_pred             --HhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEE
Confidence              1567999998777778888999998898887544

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=90.36  E-value=6.8  Score=31.61  Aligned_cols=81  Identities=16%  Similarity=0.189  Sum_probs=45.2

Q ss_pred             HcCCCEEEEEcccc-hHHH-HHHHhhCCCCCEEEEEeCCc---------------------hhHHHHHHHHHhcCCCCcE
Q 029764           18 LVNAKKTIEIGVFT-GYSL-LLTALTIPEDGQITAIDVNR---------------------ETYEIGLPIIKKAGVDHKI   74 (188)
Q Consensus        18 ~~~~~~vLeiG~g~-G~~~-~~la~~~~~~~~v~~iD~~~---------------------~~~~~a~~~~~~~~~~~~~   74 (188)
                      .....+|+-+|||. |... ..|+.. . -++++.+|.+.                     ...+.+++.+.+.+-.-++
T Consensus        21 ~L~~~~VlVvG~GglGs~va~~La~a-G-vg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v   98 (339)
T PRK07688         21 KLREKHVLIIGAGALGTANAEMLVRA-G-VGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRV   98 (339)
T ss_pred             HhcCCcEEEECCCHHHHHHHHHHHHc-C-CCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEE
Confidence            33556899999973 3332 233332 2 46899999863                     2334455666655433335


Q ss_pred             EEEEcchHH-HHHHHhhcccCCCceeEEEEeCC
Q 029764           75 NFIESEALS-VLDQLLKYSENEGSFDYAFVDAD  106 (188)
Q Consensus        75 ~~~~~d~~~-~~~~~~~~~~~~~~~D~i~id~~  106 (188)
                      +.+..+... .+..+      ...||+|+...+
T Consensus        99 ~~~~~~~~~~~~~~~------~~~~DlVid~~D  125 (339)
T PRK07688         99 EAIVQDVTAEELEEL------VTGVDLIIDATD  125 (339)
T ss_pred             EEEeccCCHHHHHHH------HcCCCEEEEcCC
Confidence            555554422 22333      267999887543

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=90.34  E-value=2.8  Score=33.23  Aligned_cols=95  Identities=18%  Similarity=0.271  Sum_probs=56.9

Q ss_pred             CCCEEEEEcccc-hHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           20 NAKKTIEIGVFT-GYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        20 ~~~~vLeiG~g~-G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ++.+||-.|+|. |..++.+|+..  +. ++++++.+++..+.+++    .+..   .++..+... +..+..   ..+.
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~--G~~~v~~~~~s~~~~~~~~~----~g~~---~vi~~~~~~-~~~~~~---~~~~  231 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRA--GAAEIVATDLADAPLAVARA----MGAD---ETVNLARDP-LAAYAA---DKGD  231 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----cCCC---EEEcCCchh-hhhhhc---cCCC
Confidence            667888888764 66777777765  44 78899888777665443    2321   222221111 112211   1245


Q ss_pred             eeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           98 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        98 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      +|+++-....   ...++..++.|+++|.++.-
T Consensus       232 vd~vld~~g~---~~~~~~~~~~L~~~G~~v~~  261 (339)
T cd08232         232 FDVVFEASGA---PAALASALRVVRPGGTVVQV  261 (339)
T ss_pred             ccEEEECCCC---HHHHHHHHHHHhcCCEEEEE
Confidence            8998854321   23567788999999998863

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=90.24  E-value=4.4  Score=32.93  Aligned_cols=101  Identities=14%  Similarity=0.117  Sum_probs=55.9

Q ss_pred             HcCCCEEEEEccc-chHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc---chHHHHHHHhhcc
Q 029764           18 LVNAKKTIEIGVF-TGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIES---EALSVLDQLLKYS   92 (188)
Q Consensus        18 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~   92 (188)
                      ..++.+||-.|+| .|..++.+|+..  +. ++++++.+++..+.+++    .+...-+.....   +..+.+..+.   
T Consensus       201 ~~~g~~VlV~g~g~vG~~ai~lA~~~--G~~~vi~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~~v~~~~---  271 (384)
T cd08265         201 FRPGAYVVVYGAGPIGLAAIALAKAA--GASKVIAFEISEERRNLAKE----MGADYVFNPTKMRDCLSGEKVMEVT---  271 (384)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHH----cCCCEEEcccccccccHHHHHHHhc---
Confidence            3455677777664 233445566654  44 79999888775544443    343211111111   2223233332   


Q ss_pred             cCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           93 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        93 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                       ....+|+|+ +..- .....++.+++.|+++|.++.-
T Consensus       272 -~g~gvDvvl-d~~g-~~~~~~~~~~~~l~~~G~~v~~  306 (384)
T cd08265         272 -KGWGADIQV-EAAG-APPATIPQMEKSIAINGKIVYI  306 (384)
T ss_pred             -CCCCCCEEE-ECCC-CcHHHHHHHHHHHHcCCEEEEE
Confidence             135699887 4322 2234577788999999998864

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=90.21  E-value=6.4  Score=31.74  Aligned_cols=101  Identities=21%  Similarity=0.352  Sum_probs=57.4

Q ss_pred             HHcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc--chHHHHHHHhhccc
Q 029764           17 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES--EALSVLDQLLKYSE   93 (188)
Q Consensus        17 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~~   93 (188)
                      ...++.+||-.|+| .|..++.+|+... ...+++++.+++..+.+++    .+....+.....  +..+.+.++.    
T Consensus       180 ~~~~g~~vlI~g~g~vG~~a~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~l~~~~----  250 (365)
T cd05279         180 KVTPGSTCAVFGLGGVGLSVIMGCKAAG-ASRIIAVDINKDKFEKAKQ----LGATECINPRDQDKPIVEVLTEMT----  250 (365)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCCeecccccccchHHHHHHHHh----
Confidence            34566788888764 3445555677653 2358888888877766643    343221222122  2222222321    


Q ss_pred             CCCceeEEEEeCCccchHHHHHHHHhccC-cCeEEEEe
Q 029764           94 NEGSFDYAFVDADKDNYCNYHERLMKLLK-VGGIAVYD  130 (188)
Q Consensus        94 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~-~gG~lv~~  130 (188)
                       .+.+|+++-...   ....+...++.|+ ++|.++.-
T Consensus       251 -~~~~d~vid~~g---~~~~~~~~~~~l~~~~G~~v~~  284 (365)
T cd05279         251 -DGGVDYAFEVIG---SADTLKQALDATRLGGGTSVVV  284 (365)
T ss_pred             -CCCCcEEEECCC---CHHHHHHHHHHhccCCCEEEEE
Confidence             256898884221   1345677788899 99988864

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=90.18  E-value=1.6  Score=38.08  Aligned_cols=93  Identities=10%  Similarity=0.004  Sum_probs=57.8

Q ss_pred             CEEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCce
Q 029764           22 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSF   98 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~   98 (188)
                      .+|+=+|  .|..+..+++.+. .+..++.+|.|++.++.+++    .|    ...+.||+.+  .+.+.     .-.+.
T Consensus       401 ~~vII~G--~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~~~L~~a-----gi~~A  465 (601)
T PRK03659        401 PQVIIVG--FGRFGQVIGRLLMANKMRITVLERDISAVNLMRK----YG----YKVYYGDATQLELLRAA-----GAEKA  465 (601)
T ss_pred             CCEEEec--CchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----CC----CeEEEeeCCCHHHHHhc-----CCccC
Confidence            3566655  4777777776553 25689999999998887764    23    4578888765  33332     24578


Q ss_pred             eEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764           99 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      |++++..+........-...+.+.|...++.
T Consensus       466 ~~vv~~~~d~~~n~~i~~~~r~~~p~~~Iia  496 (601)
T PRK03659        466 EAIVITCNEPEDTMKIVELCQQHFPHLHILA  496 (601)
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHHCCCCeEEE
Confidence            8888764433322233333455667766665

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=90.18  E-value=6  Score=30.16  Aligned_cols=88  Identities=18%  Similarity=0.195  Sum_probs=44.8

Q ss_pred             EEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCc-------------------hhHHHHHHHHHhcCCCCcEEEEEcch-
Q 029764           23 KTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIESEA-   81 (188)
Q Consensus        23 ~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~d~-   81 (188)
                      +||-+|+| .|...+..+.... -++++.+|.+.                   ...+.+.+++.+.+-.-+++.+.... 
T Consensus         1 kVlvvG~GGlG~eilk~La~~G-vg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~   79 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMG-FGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG   79 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence            47778885 3333222222222 46888888633                   23344555665554333455555554 


Q ss_pred             --HHHHHHHhhcccCCCceeEEEEeCCccchHHHHHHH
Q 029764           82 --LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERL  117 (188)
Q Consensus        82 --~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~  117 (188)
                        .+....+      ..+||+|+...+......++.++
T Consensus        80 ~~~~~~~~f------~~~~DvVi~a~Dn~~aR~~ln~~  111 (234)
T cd01484          80 PEQDFNDTF------FEQFHIIVNALDNIIARRYVNGM  111 (234)
T ss_pred             hhhhchHHH------HhCCCEEEECCCCHHHHHHHHHH
Confidence              2222233      36799999765443333444433

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.02  E-value=5.6  Score=31.09  Aligned_cols=96  Identities=17%  Similarity=0.100  Sum_probs=54.7

Q ss_pred             CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc--------CCC---------CcEEEEEcchHHH
Q 029764           22 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--------GVD---------HKINFIESEALSV   84 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--------~~~---------~~~~~~~~d~~~~   84 (188)
                      ++|.-||+|.=..++..+-... +.+|+.+|.+++.++.+++.+...        .+.         .++.+ ..|..+.
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~-G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~a   81 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFH-GFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAEA   81 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHHH
Confidence            4688888874433333222212 568999999999888887654321        111         12222 2222211


Q ss_pred             HHHHhhcccCCCceeEEEEeCCcc--chHHHHHHHHhccCcCeEEEE
Q 029764           85 LDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        85 ~~~~~~~~~~~~~~D~i~id~~~~--~~~~~~~~~~~~L~~gG~lv~  129 (188)
                                ...-|+|+......  ....+++.+.+.++++.+++.
T Consensus        82 ----------~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s  118 (287)
T PRK08293         82 ----------VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFAT  118 (287)
T ss_pred             ----------hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence                      14568888765422  345677778777777765544

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=90.01  E-value=5.9  Score=30.51  Aligned_cols=98  Identities=14%  Similarity=0.140  Sum_probs=59.6

Q ss_pred             HHHcCCCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcc---hHHHHHHHhh
Q 029764           16 LRLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE---ALSVLDQLLK   90 (188)
Q Consensus        16 ~~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~   90 (188)
                      ....++.+||-.|+  +.|..+..+++..  +.++++++.+++..+.+++    .+..   .++..+   ..+.+..+. 
T Consensus       132 ~~~~~g~~vlI~g~~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~-  201 (320)
T cd05286         132 YPVKPGDTVLVHAAAGGVGLLLTQWAKAL--GATVIGTVSSEEKAELARA----AGAD---HVINYRDEDFVERVREIT-  201 (320)
T ss_pred             cCCCCCCEEEEEcCCchHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----CCCC---EEEeCCchhHHHHHHHHc-
Confidence            34556778888884  4667777788775  5788998888776665533    3432   222222   222222221 


Q ss_pred             cccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           91 YSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        91 ~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                         ....+|+++-... .   .....+++.++++|.++.-
T Consensus       202 ---~~~~~d~vl~~~~-~---~~~~~~~~~l~~~g~~v~~  234 (320)
T cd05286         202 ---GGRGVDVVYDGVG-K---DTFEGSLDSLRPRGTLVSF  234 (320)
T ss_pred             ---CCCCeeEEEECCC-c---HhHHHHHHhhccCcEEEEE
Confidence               1356999884322 1   3456778899999988853

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=89.96  E-value=10  Score=31.51  Aligned_cols=105  Identities=17%  Similarity=0.176  Sum_probs=57.5

Q ss_pred             CEEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcc-----cCC
Q 029764           22 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS-----ENE   95 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~   95 (188)
                      ++|-=||.|.  .+..+|..+. .+.+|+++|.+++.++..+.     +.   +.+...+..+.+.+..+.+     ...
T Consensus         4 ~kI~VIGlG~--~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~-----g~---~~~~e~~l~~~l~~~~~~g~l~~~~~~   73 (415)
T PRK11064          4 ETISVIGLGY--IGLPTAAAFASRQKQVIGVDINQHAVDTINR-----GE---IHIVEPDLDMVVKTAVEGGYLRATTTP   73 (415)
T ss_pred             cEEEEECcch--hhHHHHHHHHhCCCEEEEEeCCHHHHHHHHC-----CC---CCcCCCCHHHHHHHHhhcCceeeeccc
Confidence            4677788764  3333333321 25789999999987764321     21   1222222222222111000     011


Q ss_pred             CceeEEEEeCCc----------cchHHHHHHHHhccCcCeEEEEeccccCc
Q 029764           96 GSFDYAFVDADK----------DNYCNYHERLMKLLKVGGIAVYDNTLWGG  136 (188)
Q Consensus        96 ~~~D~i~id~~~----------~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  136 (188)
                      ...|+||+..+.          .......+.+.+.+++|.++|...+...|
T Consensus        74 ~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pg  124 (415)
T PRK11064         74 EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVG  124 (415)
T ss_pred             ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCC
Confidence            357899887543          24455667788899998888887666544

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=89.91  E-value=3.3  Score=32.25  Aligned_cols=85  Identities=14%  Similarity=0.066  Sum_probs=48.0

Q ss_pred             EEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029764           23 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  101 (188)
Q Consensus        23 ~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i  101 (188)
                      +|.=||+|  ..+..++..+. .+.+|+++|.+++..+.+.+.    +.   +.....+. +   .       ....|+|
T Consensus         2 ~I~IIG~G--~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~----g~---~~~~~~~~-~---~-------~~~aDlV   61 (279)
T PRK07417          2 KIGIVGLG--LIGGSLGLDLRSLGHTVYGVSRRESTCERAIER----GL---VDEASTDL-S---L-------LKDCDLV   61 (279)
T ss_pred             eEEEEeec--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC----CC---cccccCCH-h---H-------hcCCCEE
Confidence            35556764  34333333331 256899999998876665432    21   11111111 1   1       1457888


Q ss_pred             EEeCCccchHHHHHHHHhccCcCeEE
Q 029764          102 FVDADKDNYCNYHERLMKLLKVGGIA  127 (188)
Q Consensus       102 ~id~~~~~~~~~~~~~~~~L~~gG~l  127 (188)
                      |+..+.....+.++.+.+.++++.++
T Consensus        62 ilavp~~~~~~~~~~l~~~l~~~~ii   87 (279)
T PRK07417         62 ILALPIGLLLPPSEQLIPALPPEAIV   87 (279)
T ss_pred             EEcCCHHHHHHHHHHHHHhCCCCcEE
Confidence            88776666666777777777766433

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=89.89  E-value=3  Score=33.44  Aligned_cols=99  Identities=13%  Similarity=-0.015  Sum_probs=63.9

Q ss_pred             CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC-cee
Q 029764           21 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG-SFD   99 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~D   99 (188)
                      ..+++|+.||.|....-+..+.  ---+.++|+++.+++.-+.|+..      -.++..|..+...+-.     .. .+|
T Consensus         3 ~~~~idLFsG~GG~~lGf~~ag--f~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~-----~~~~~D   69 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAG--FEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEAL-----RKSDVD   69 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcC--CeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhc-----cccCCC
Confidence            3579999999999988877652  13577899999998888887632      3566677765543321     12 789


Q ss_pred             EEEEeCCccc----------------hHHHHHHHHhccCcCeEEEEeccc
Q 029764          100 YAFVDADKDN----------------YCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus       100 ~i~id~~~~~----------------~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      +++...+.+.                ..-.+.++...++| -.+++.|+-
T Consensus        70 vligGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV~  118 (328)
T COG0270          70 VLIGGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENVK  118 (328)
T ss_pred             EEEeCCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC-CEEEEecCc
Confidence            8875422111                11123444577777 777777654

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=89.81  E-value=5.6  Score=31.21  Aligned_cols=99  Identities=15%  Similarity=0.155  Sum_probs=58.2

Q ss_pred             HcCCCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764           18 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        18 ~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      ..++.+||=.|.  +.|..+..+|+..  +.++++++.+++..+.+++.   .+....+.....+..+.+..+.     .
T Consensus       143 ~~~~~~vlI~g~~g~ig~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~v~~~~-----~  212 (329)
T cd05288         143 PKPGETVVVSAAAGAVGSVVGQIAKLL--GARVVGIAGSDEKCRWLVEE---LGFDAAINYKTPDLAEALKEAA-----P  212 (329)
T ss_pred             CCCCCEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhh---cCCceEEecCChhHHHHHHHhc-----c
Confidence            345668887773  4677777788874  57899998888766655543   2332111111112222222221     2


Q ss_pred             CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ..+|+++-...    ...+...++.++++|.++.-
T Consensus       213 ~~~d~vi~~~g----~~~~~~~~~~l~~~G~~v~~  243 (329)
T cd05288         213 DGIDVYFDNVG----GEILDAALTLLNKGGRIALC  243 (329)
T ss_pred             CCceEEEEcch----HHHHHHHHHhcCCCceEEEE
Confidence            56898873221    23567778999999988753

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.75  E-value=6.7  Score=30.94  Aligned_cols=94  Identities=23%  Similarity=0.145  Sum_probs=52.3

Q ss_pred             CCEEEEEcccchHH--HHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc-CC----------CCcEEEEEcchHHHHHH
Q 029764           21 AKKTIEIGVFTGYS--LLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-GV----------DHKINFIESEALSVLDQ   87 (188)
Q Consensus        21 ~~~vLeiG~g~G~~--~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~----------~~~~~~~~~d~~~~~~~   87 (188)
                      -++|.=||+|.=..  +..++.   .+.+|+.+|.+++.++.+++.+... +.          ..++.+ ..|..+.   
T Consensus         4 ~~~I~vIGaG~mG~~iA~~l~~---~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~---   76 (311)
T PRK06130          4 IQNLAIIGAGTMGSGIAALFAR---KGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAA---   76 (311)
T ss_pred             ccEEEEECCCHHHHHHHHHHHh---CCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHH---
Confidence            35688888874332  223333   2568999999999888877643221 11          011221 1222111   


Q ss_pred             HhhcccCCCceeEEEEeCCcc--chHHHHHHHHhccCcCeEEE
Q 029764           88 LLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVGGIAV  128 (188)
Q Consensus        88 ~~~~~~~~~~~D~i~id~~~~--~~~~~~~~~~~~L~~gG~lv  128 (188)
                             ....|+|+......  ....++..+.+.++++.+++
T Consensus        77 -------~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~  112 (311)
T PRK06130         77 -------VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFA  112 (311)
T ss_pred             -------hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEE
Confidence                   14679998875433  24567777777666655443

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=89.75  E-value=6.7  Score=31.41  Aligned_cols=99  Identities=17%  Similarity=0.183  Sum_probs=55.7

Q ss_pred             CCCEEEEEccc-chHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchH---HHHHHHhhcccC
Q 029764           20 NAKKTIEIGVF-TGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL---SVLDQLLKYSEN   94 (188)
Q Consensus        20 ~~~~vLeiG~g-~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~~~~   94 (188)
                      ++.+||-.|+| .|..++.+|+..  +. ++++++.+++....++    +.+...-+.....+..   ..+.+..    .
T Consensus       177 ~g~~vlI~g~g~vG~~~~~lak~~--G~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~----~  246 (361)
T cd08231         177 AGDTVVVQGAGPLGLYAVAAAKLA--GARRVIVIDGSPERLELAR----EFGADATIDIDELPDPQRRAIVRDIT----G  246 (361)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHH----HcCCCeEEcCcccccHHHHHHHHHHh----C
Confidence            56678777754 334556677765  45 8999988777655543    3353221111111111   1122221    1


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      ...+|++|-....   ...+...++.++++|.++.-.
T Consensus       247 ~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g  280 (361)
T cd08231         247 GRGADVVIEASGH---PAAVPEGLELLRRGGTYVLVG  280 (361)
T ss_pred             CCCCcEEEECCCC---hHHHHHHHHHhccCCEEEEEc
Confidence            3579988753222   235677789999999988643

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=89.72  E-value=1.9  Score=37.18  Aligned_cols=92  Identities=8%  Similarity=-0.027  Sum_probs=56.9

Q ss_pred             EEEEEcccchHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcccCCCcee
Q 029764           23 KTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSFD   99 (188)
Q Consensus        23 ~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~D   99 (188)
                      +++=+|+  |..+..+++.+.. +..++.+|.|++..+.+++.        ....+.+|+.+.  +.+.     .-++.|
T Consensus       419 hiiI~G~--G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~--------g~~~i~GD~~~~~~L~~a-----~i~~a~  483 (558)
T PRK10669        419 HALLVGY--GRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER--------GIRAVLGNAANEEIMQLA-----HLDCAR  483 (558)
T ss_pred             CEEEECC--ChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC--------CCeEEEcCCCCHHHHHhc-----CccccC
Confidence            5666555  7777777777642 46899999999987777642        256788988653  3322     235789


Q ss_pred             EEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764          100 YAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus       100 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      .+++..+.+.....+-.+.+...+...++.
T Consensus       484 ~viv~~~~~~~~~~iv~~~~~~~~~~~iia  513 (558)
T PRK10669        484 WLLLTIPNGYEAGEIVASAREKRPDIEIIA  513 (558)
T ss_pred             EEEEEcCChHHHHHHHHHHHHHCCCCeEEE
Confidence            887753322222223333455566666665

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=89.70  E-value=8  Score=30.69  Aligned_cols=100  Identities=14%  Similarity=0.140  Sum_probs=56.5

Q ss_pred             cCCCEEEEEccc-chHHHHHHHhhCCCCCE-EEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           19 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        19 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      .++.+|+-.|+| .|..++.+|+..  +.+ ++.++.+++....+++    .+...-+.....+..+.+.++.    ...
T Consensus       160 ~~g~~vlI~~~g~vg~~a~~la~~~--G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~l~~~~----~~~  229 (340)
T TIGR00692       160 ISGKSVLVTGAGPIGLMAIAVAKAS--GAYPVIVSDPNEYRLELAKK----MGATYVVNPFKEDVVKEVADLT----DGE  229 (340)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----hCCcEEEcccccCHHHHHHHhc----CCC
Confidence            455666666654 455666677765  454 8888777665554443    3432112222223333333332    235


Q ss_pred             ceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           97 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        97 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      .+|+++-....   ...+..+++.|+++|.++.-.
T Consensus       230 ~~d~vld~~g~---~~~~~~~~~~l~~~g~~v~~g  261 (340)
T TIGR00692       230 GVDVFLEMSGA---PKALEQGLQAVTPGGRVSLLG  261 (340)
T ss_pred             CCCEEEECCCC---HHHHHHHHHhhcCCCEEEEEc
Confidence            68998864222   245677889999999887643

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=89.54  E-value=8.5  Score=31.78  Aligned_cols=123  Identities=15%  Similarity=0.138  Sum_probs=68.7

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCC-chhHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029764            5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVN-RETYEIGLPIIKKAGVDHKINFIESEALS   83 (188)
Q Consensus         5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~-~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   83 (188)
                      .|...++-..++.......++-.++|+......+...++++.+|+..+.. ........+.+...|.  .+.++..+..+
T Consensus        69 ~p~~~~le~~lA~l~g~~~al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~--~v~~vd~~d~~  146 (403)
T PRK07810         69 NPTVSMFEERLRLIEGAEACFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGV--ETVFVDGEDLS  146 (403)
T ss_pred             CchHHHHHHHHHHHhCCCcEEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCc--EEEEECCCCHH
Confidence            45667777778888888888988888877655554445556777776532 2333444444555553  34554433223


Q ss_pred             HHHHHhhcccCCCceeEEEEeCC--ccchHHHHHHHHhccCcCe-EEEEecccc
Q 029764           84 VLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGG-IAVYDNTLW  134 (188)
Q Consensus        84 ~~~~~~~~~~~~~~~D~i~id~~--~~~~~~~~~~~~~~L~~gG-~lv~~~~~~  134 (188)
                      .+....     .....+|++...  +......++.+.++.+..| .+++|++..
T Consensus       147 ~l~~ai-----~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a  195 (403)
T PRK07810        147 QWEEAL-----SVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFA  195 (403)
T ss_pred             HHHHhc-----CcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCC
Confidence            333321     234678887632  2221223455555555545 566676654

>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A

Probab=89.51  E-value=1.4  Score=27.27  Aligned_cols=38  Identities=21%  Similarity=0.304  Sum_probs=21.5

Q ss_pred             HcCCCEEEEEcccchH-HHHHHHhhCCCCCEEEEEeCCc
Q 029764           18 LVNAKKTIEIGVFTGY-SLLLTALTIPEDGQITAIDVNR   55 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~-~~~~la~~~~~~~~v~~iD~~~   55 (188)
                      ...|++||-||+-+|+ .+..++..+..+...++|-.+.
T Consensus        36 ~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fEk   74 (78)
T PF12242_consen   36 INGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFEK   74 (78)
T ss_dssp             -TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE---
T ss_pred             CCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeecc
Confidence            3556899999999998 4444555554467777776543

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=89.45  E-value=6.2  Score=28.30  Aligned_cols=110  Identities=18%  Similarity=0.204  Sum_probs=62.9

Q ss_pred             cHHHHHHHHHHHHH--cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchH
Q 029764            5 APDAGQLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   82 (188)
Q Consensus         5 ~~~~~~~l~~l~~~--~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   82 (188)
                      +.++.+.|...+..  .+..+|+=|||=+-+..+.-  ...+..+++..|.|...        +..+- +...+.-....
T Consensus         8 s~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~--~~~~~~~~~Lle~D~RF--------~~~~~-~~F~fyD~~~p   76 (162)
T PF10237_consen    8 SDETAEFLARELLDGALDDTRIACLSTPSLYEALKK--ESKPRIQSFLLEYDRRF--------EQFGG-DEFVFYDYNEP   76 (162)
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHh--hcCCCccEEEEeecchH--------HhcCC-cceEECCCCCh
Confidence            34555666555444  44568999998555544433  22236789999998764        22221 11334444443


Q ss_pred             HHHHHHhhcccCCCceeEEEEeCCcc--c-hHHHHHHHHhccCcCeEEEEe
Q 029764           83 SVLDQLLKYSENEGSFDYAFVDADKD--N-YCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        83 ~~~~~~~~~~~~~~~~D~i~id~~~~--~-~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ..++...     .++||+|++|.+.-  . .......+.-++++++.+++.
T Consensus        77 ~~~~~~l-----~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~  122 (162)
T PF10237_consen   77 EELPEEL-----KGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILC  122 (162)
T ss_pred             hhhhhhc-----CCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEe
Confidence            3344322     47999999997641  1 223334444566887888765

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=89.45  E-value=7.9  Score=30.66  Aligned_cols=101  Identities=20%  Similarity=0.260  Sum_probs=57.9

Q ss_pred             HHcCCCEEEEEcccc-hHHHHHHHhhCCCCCE-EEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           17 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      ...++.+||-.|+|. |..+..+|+..  +.+ ++.++.+++..+.++    ..+...-+...... .+.+....    .
T Consensus       156 ~~~~~~~vlI~g~g~~g~~~~~lA~~~--G~~~v~~~~~~~~~~~~l~----~~g~~~~~~~~~~~-~~~~~~~~----~  224 (343)
T cd08236         156 GITLGDTVVVIGAGTIGLLAIQWLKIL--GAKRVIAVDIDDEKLAVAR----ELGADDTINPKEED-VEKVRELT----E  224 (343)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHH----HcCCCEEecCcccc-HHHHHHHh----C
Confidence            344666888888754 66777778765  444 888888776655443    23432111111112 22222221    1


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      ...+|+++-....   ...+..+++.|+++|.++.-.
T Consensus       225 ~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~g  258 (343)
T cd08236         225 GRGADLVIEAAGS---PATIEQALALARPGGKVVLVG  258 (343)
T ss_pred             CCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEEc
Confidence            2459998853211   345677889999999887643

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=89.42  E-value=6.9  Score=32.00  Aligned_cols=82  Identities=15%  Similarity=0.164  Sum_probs=44.8

Q ss_pred             cCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCC-------------------chhHHHHHHHHHhcCCCCcEEEEE
Q 029764           19 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVN-------------------RETYEIGLPIIKKAGVDHKINFIE   78 (188)
Q Consensus        19 ~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~-------------------~~~~~~a~~~~~~~~~~~~~~~~~   78 (188)
                      ....+|+-+|||. |...+..+.... -++++.+|.+                   ....+.+.+.+.+.+-.-+++.+.
T Consensus       133 l~~~~VlvvG~GG~Gs~ia~~La~~G-vg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~  211 (376)
T PRK08762        133 LLEARVLLIGAGGLGSPAALYLAAAG-VGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQ  211 (376)
T ss_pred             HhcCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence            3567899999973 443333322222 4689999987                   345566666666554222344443


Q ss_pred             cchHH-HHHHHhhcccCCCceeEEEEeCCc
Q 029764           79 SEALS-VLDQLLKYSENEGSFDYAFVDADK  107 (188)
Q Consensus        79 ~d~~~-~~~~~~~~~~~~~~~D~i~id~~~  107 (188)
                      ..... .+..+      ...+|+|+...+.
T Consensus       212 ~~~~~~~~~~~------~~~~D~Vv~~~d~  235 (376)
T PRK08762        212 ERVTSDNVEAL------LQDVDVVVDGADN  235 (376)
T ss_pred             ccCChHHHHHH------HhCCCEEEECCCC
Confidence            33221 22233      2579988865433

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=89.31  E-value=5.3  Score=33.23  Aligned_cols=93  Identities=18%  Similarity=0.138  Sum_probs=56.6

Q ss_pred             EEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcccCCCcee
Q 029764           23 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSFD   99 (188)
Q Consensus        23 ~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~D   99 (188)
                      +|+-+|+  |..+..++..+. .+..++.+|.+++.++.+++.   .    .+.++.+|+.+.  +...     ....+|
T Consensus         2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~---~----~~~~~~gd~~~~~~l~~~-----~~~~a~   67 (453)
T PRK09496          2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR---L----DVRTVVGNGSSPDVLREA-----GAEDAD   67 (453)
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh---c----CEEEEEeCCCCHHHHHHc-----CCCcCC
Confidence            5677666  788888887664 256899999999887766542   1    367778887542  2222     135789


Q ss_pred             EEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764          100 YAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus       100 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      .+++..........+....+.+.+.-.+++
T Consensus        68 ~vi~~~~~~~~n~~~~~~~r~~~~~~~ii~   97 (453)
T PRK09496         68 LLIAVTDSDETNMVACQIAKSLFGAPTTIA   97 (453)
T ss_pred             EEEEecCChHHHHHHHHHHHHhcCCCeEEE
Confidence            888865433333334444455534433443

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=89.26  E-value=4.6  Score=30.86  Aligned_cols=93  Identities=14%  Similarity=0.163  Sum_probs=56.9

Q ss_pred             HHcCCCEEEEEcccc-hHHHHHHHhhCCCCCE-EEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           17 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      ...++.++|-.|+|. |..++.+|+..  +.+ +++++.+++..+.+++.    +..+.+  +.... ..   .     .
T Consensus        94 ~~~~g~~vlI~g~g~vg~~~i~~a~~~--g~~~vi~~~~~~~~~~~~~~~----g~~~~~--~~~~~-~~---~-----~  156 (277)
T cd08255          94 EPRLGERVAVVGLGLVGLLAAQLAKAA--GAREVVGVDPDAARRELAEAL----GPADPV--AADTA-DE---I-----G  156 (277)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCcEEEECCCHHHHHHHHHc----CCCccc--cccch-hh---h-----c
Confidence            455667888888764 66777778775  345 99999888877655542    311111  11100 01   0     1


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      ...+|+++-....   ...+...++.|+++|.++.
T Consensus       157 ~~~~d~vl~~~~~---~~~~~~~~~~l~~~g~~~~  188 (277)
T cd08255         157 GRGADVVIEASGS---PSALETALRLLRDRGRVVL  188 (277)
T ss_pred             CCCCCEEEEccCC---hHHHHHHHHHhcCCcEEEE
Confidence            3579988854322   2356777888999998875

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=89.14  E-value=2.6  Score=34.71  Aligned_cols=100  Identities=17%  Similarity=0.221  Sum_probs=52.9

Q ss_pred             EEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc---CCC-----CcEEEEEc-chHHHHHHHhhcccC
Q 029764           24 TIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA---GVD-----HKINFIES-EALSVLDQLLKYSEN   94 (188)
Q Consensus        24 vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~---~~~-----~~~~~~~~-d~~~~~~~~~~~~~~   94 (188)
                      |--||+  |+.+..+|..+..+.+|+++|.+++.++.+++.....   ++.     .+..+... +..+.          
T Consensus         3 I~VIGl--GyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~----------   70 (388)
T PRK15057          3 ITISGT--GYVGLSNGLLIAQNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEA----------   70 (388)
T ss_pred             EEEECC--CHHHHHHHHHHHhCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhh----------
Confidence            445666  5544444443333568999999999988776521100   000     01122111 11111          


Q ss_pred             CCceeEEEEeCCc-----------cchHHHHHHHHhccCcCeEEEEeccccCc
Q 029764           95 EGSFDYAFVDADK-----------DNYCNYHERLMKLLKVGGIAVYDNTLWGG  136 (188)
Q Consensus        95 ~~~~D~i~id~~~-----------~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  136 (188)
                      ....|+|++.-+.           .......+.+.+ +++|..+|...+..+|
T Consensus        71 ~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pg  122 (388)
T PRK15057         71 YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVG  122 (388)
T ss_pred             hcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCc
Confidence            1456888876421           122344556666 6888888777666544

>cd05281 TDH Threonine dehydrogenase

Probab=89.01  E-value=9.6  Score=30.23  Aligned_cols=98  Identities=20%  Similarity=0.179  Sum_probs=54.8

Q ss_pred             cCCCEEEEEcccc-hHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           19 VNAKKTIEIGVFT-GYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        19 ~~~~~vLeiG~g~-G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      .++.+||-.|+|. |..++.+|+..  +. ++++++.+++....+++    .+....+.....+.. .+.++.    ..+
T Consensus       162 ~~g~~vlV~g~g~vg~~~~~la~~~--G~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~-~~~~~~----~~~  230 (341)
T cd05281         162 VSGKSVLITGCGPIGLMAIAVAKAA--GASLVIASDPNPYRLELAKK----MGADVVINPREEDVV-EVKSVT----DGT  230 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----hCcceeeCcccccHH-HHHHHc----CCC
Confidence            4556777666543 55666777765  44 68888766665554443    343211111122222 222222    135


Q ss_pred             ceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           97 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        97 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      .+|+++-....   ......+++.|+++|.++.-
T Consensus       231 ~vd~vld~~g~---~~~~~~~~~~l~~~G~~v~~  261 (341)
T cd05281         231 GVDVVLEMSGN---PKAIEQGLKALTPGGRVSIL  261 (341)
T ss_pred             CCCEEEECCCC---HHHHHHHHHHhccCCEEEEE
Confidence            78998854322   23466778899999998864

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=88.99  E-value=3.8  Score=32.82  Aligned_cols=102  Identities=21%  Similarity=0.170  Sum_probs=61.1

Q ss_pred             HcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           18 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        18 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      ..+++++--+|.| -|..++.+|+++  +.+|++||.+...-+   +.++.+|-...+.+. .|. +.....      ..
T Consensus       179 ~~pG~~vgI~GlGGLGh~aVq~AKAM--G~rV~vis~~~~kke---ea~~~LGAd~fv~~~-~d~-d~~~~~------~~  245 (360)
T KOG0023|consen  179 LGPGKWVGIVGLGGLGHMAVQYAKAM--GMRVTVISTSSKKKE---EAIKSLGADVFVDST-EDP-DIMKAI------MK  245 (360)
T ss_pred             CCCCcEEEEecCcccchHHHHHHHHh--CcEEEEEeCCchhHH---HHHHhcCcceeEEec-CCH-HHHHHH------HH
Confidence            4466776666643 789999999998  689999999875433   344555644322222 222 333333      23


Q ss_pred             ceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           97 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        97 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      ..|.++-... ......++.+..+||++|.+|+-...
T Consensus       246 ~~dg~~~~v~-~~a~~~~~~~~~~lk~~Gt~V~vg~p  281 (360)
T KOG0023|consen  246 TTDGGIDTVS-NLAEHALEPLLGLLKVNGTLVLVGLP  281 (360)
T ss_pred             hhcCcceeee-eccccchHHHHHHhhcCCEEEEEeCc
Confidence            4454432211 00223467788999999999986544

>PLN02256 arogenate dehydrogenase

Probab=88.82  E-value=8.5  Score=30.54  Aligned_cols=94  Identities=16%  Similarity=0.037  Sum_probs=51.7

Q ss_pred             HHHHHHHcCCCEEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhh
Q 029764           12 MAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK   90 (188)
Q Consensus        12 l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   90 (188)
                      |+.-++..+..+|.=||+|  ..+..++..+. .+.+|+++|.++. .+.    ....+.    .. ..+..+.+     
T Consensus        27 ~~~~~~~~~~~kI~IIG~G--~mG~slA~~L~~~G~~V~~~d~~~~-~~~----a~~~gv----~~-~~~~~e~~-----   89 (304)
T PLN02256         27 LQEELEKSRKLKIGIVGFG--NFGQFLAKTFVKQGHTVLATSRSDY-SDI----AAELGV----SF-FRDPDDFC-----   89 (304)
T ss_pred             HhHhhccCCCCEEEEEeeC--HHHHHHHHHHHhCCCEEEEEECccH-HHH----HHHcCC----ee-eCCHHHHh-----
Confidence            3444455566688889874  44444444432 1458999998863 122    222332    22 22322221     


Q ss_pred             cccCCCceeEEEEeCCccchHHHHHHH-HhccCcCeE
Q 029764           91 YSENEGSFDYAFVDADKDNYCNYHERL-MKLLKVGGI  126 (188)
Q Consensus        91 ~~~~~~~~D~i~id~~~~~~~~~~~~~-~~~L~~gG~  126 (188)
                          ....|+|++........+.++.+ ...++++.+
T Consensus        90 ----~~~aDvVilavp~~~~~~vl~~l~~~~l~~~~i  122 (304)
T PLN02256         90 ----EEHPDVVLLCTSILSTEAVLRSLPLQRLKRSTL  122 (304)
T ss_pred             ----hCCCCEEEEecCHHHHHHHHHhhhhhccCCCCE
Confidence                13468888876666666667766 455666653

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=88.82  E-value=6.7  Score=31.52  Aligned_cols=98  Identities=21%  Similarity=0.304  Sum_probs=57.8

Q ss_pred             HHcCCCEEEEEccc-chHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc---chHHHHHHHhhc
Q 029764           17 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIES---EALSVLDQLLKY   91 (188)
Q Consensus        17 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~   91 (188)
                      ...++.+||-.|+| .|..++.+|+..  +. +|+.++.+++..+.+++    .+..   .++..   +....+..+.  
T Consensus       179 ~~~~g~~vLI~g~g~vG~a~i~lak~~--G~~~Vi~~~~~~~~~~~~~~----~g~~---~vv~~~~~~~~~~l~~~~--  247 (363)
T cd08279         179 RVRPGDTVAVIGCGGVGLNAIQGARIA--GASRIIAVDPVPEKLELARR----FGAT---HTVNASEDDAVEAVRDLT--  247 (363)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCcEEEEcCCHHHHHHHHH----hCCe---EEeCCCCccHHHHHHHHc--
Confidence            34566788887764 466677778765  44 48888888776655532    3431   22222   2222233331  


Q ss_pred             ccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           92 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        92 ~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                        ....+|+++-....   ...+..+++.|+++|.++.-
T Consensus       248 --~~~~vd~vld~~~~---~~~~~~~~~~l~~~G~~v~~  281 (363)
T cd08279         248 --DGRGADYAFEAVGR---AATIRQALAMTRKGGTAVVV  281 (363)
T ss_pred             --CCCCCCEEEEcCCC---hHHHHHHHHHhhcCCeEEEE
Confidence              13569977643221   24567788999999988764

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=88.79  E-value=3.8  Score=32.14  Aligned_cols=89  Identities=21%  Similarity=0.105  Sum_probs=49.1

Q ss_pred             CEEEEEcccchHHHHHHHhhCCC---CCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           22 KKTIEIGVFTGYSLLLTALTIPE---DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .+|+=+|.  |..+-++++.+..   ...+++.|.+....+.+.+    .+..+    -..+....  ..      ....
T Consensus         4 ~~v~IvG~--GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----lgv~d----~~~~~~~~--~~------~~~a   65 (279)
T COG0287           4 MKVGIVGL--GLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----LGVID----ELTVAGLA--EA------AAEA   65 (279)
T ss_pred             cEEEEECC--chHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----cCccc----ccccchhh--hh------cccC
Confidence            45677775  4555555544432   3446777776665554432    12211    11111001  10      2567


Q ss_pred             eEEEEeCCccchHHHHHHHHhccCcCeEEE
Q 029764           99 DYAFVDADKDNYCNYHERLMKLLKVGGIAV  128 (188)
Q Consensus        99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv  128 (188)
                      |+|++.-+.....++++++.+.|++|..++
T Consensus        66 D~VivavPi~~~~~~l~~l~~~l~~g~iv~   95 (279)
T COG0287          66 DLVIVAVPIEATEEVLKELAPHLKKGAIVT   95 (279)
T ss_pred             CEEEEeccHHHHHHHHHHhcccCCCCCEEE
Confidence            888888777777778888877777776554

>PRK05967 cystathionine beta-lyase; Provisional

Probab=88.73  E-value=12  Score=30.84  Aligned_cols=122  Identities=14%  Similarity=0.110  Sum_probs=69.9

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchh-HHHHHHHHHhcCCCCcEEEEEcchHH
Q 029764            5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRET-YEIGLPIIKKAGVDHKINFIESEALS   83 (188)
Q Consensus         5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~-~~~a~~~~~~~~~~~~~~~~~~d~~~   83 (188)
                      .|....+-..++........+-+.+|.+.....+...+.++.+|+..+..-.. ...+++.++..|.  .+.++..+..+
T Consensus        63 nPt~~~Le~~la~le~~~~~v~~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi--~v~~vd~~~~e  140 (395)
T PRK05967         63 TPTTDALCKAIDALEGSAGTILVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGV--EVEYYDPEIGA  140 (395)
T ss_pred             ChHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCe--EEEEeCCCCHH
Confidence            45555555555565556566777787766665555556667888887654332 2334455566664  35555433223


Q ss_pred             HHHHHhhcccCCCceeEEEEeCC--ccchHHHHHHHHhccCcCe-EEEEeccc
Q 029764           84 VLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGG-IAVYDNTL  133 (188)
Q Consensus        84 ~~~~~~~~~~~~~~~D~i~id~~--~~~~~~~~~~~~~~L~~gG-~lv~~~~~  133 (188)
                      .+.+..     .....+|++..+  +.-....++.+.++.+..| .+++|+++
T Consensus       141 ~l~~al-----~~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~  188 (395)
T PRK05967        141 GIAKLM-----RPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTW  188 (395)
T ss_pred             HHHHhc-----CcCceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCc
Confidence            333332     244678988843  2334456677777777666 45555554

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=88.73  E-value=7.1  Score=30.50  Aligned_cols=99  Identities=17%  Similarity=0.181  Sum_probs=56.3

Q ss_pred             HcCCCEEEEEccc--chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764           18 LVNAKKTIEIGVF--TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        18 ~~~~~~vLeiG~g--~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      ..++.+++-.|.+  .|..+..++...  +.+++.++.+++....+++    .+....+.....+..+.+....    ..
T Consensus       164 ~~~~~~vlI~g~~~~iG~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~----~~  233 (342)
T cd08266         164 LRPGETVLVHGAGSGVGSAAIQIAKLF--GATVIATAGSEDKLERAKE----LGADYVIDYRKEDFVREVRELT----GK  233 (342)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCeEEecCChHHHHHHHHHh----CC
Confidence            4566788888864  556666666654  5788888888776555432    2321111111112222222221    12


Q ss_pred             CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ..+|+++-....    ..++.+++.++++|.++.-
T Consensus       234 ~~~d~~i~~~g~----~~~~~~~~~l~~~G~~v~~  264 (342)
T cd08266         234 RGVDVVVEHVGA----ATWEKSLKSLARGGRLVTC  264 (342)
T ss_pred             CCCcEEEECCcH----HHHHHHHHHhhcCCEEEEE
Confidence            468988754322    3456777889999988764

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=88.65  E-value=9.2  Score=29.28  Aligned_cols=83  Identities=16%  Similarity=0.157  Sum_probs=44.7

Q ss_pred             HcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCc-------------------hhHHHHHHHHHhcCCCCcEEEE
Q 029764           18 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFI   77 (188)
Q Consensus        18 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~   77 (188)
                      ..+..+|+-+|+| .|...+..+.... -++++.+|.+.                   ...+.+++.+.+.+-.-+++.+
T Consensus        29 ~L~~~~VliiG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~  107 (245)
T PRK05690         29 KLKAARVLVVGLGGLGCAASQYLAAAG-VGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETI  107 (245)
T ss_pred             HhcCCeEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEE
Confidence            3456799999997 3443333222222 46888887532                   2334455666655433344444


Q ss_pred             EcchHH-HHHHHhhcccCCCceeEEEEeCCc
Q 029764           78 ESEALS-VLDQLLKYSENEGSFDYAFVDADK  107 (188)
Q Consensus        78 ~~d~~~-~~~~~~~~~~~~~~~D~i~id~~~  107 (188)
                      .....+ ....+      ...||+|+...+.
T Consensus       108 ~~~i~~~~~~~~------~~~~DiVi~~~D~  132 (245)
T PRK05690        108 NARLDDDELAAL------IAGHDLVLDCTDN  132 (245)
T ss_pred             eccCCHHHHHHH------HhcCCEEEecCCC
Confidence            443322 22333      3679998876543

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=88.62  E-value=11  Score=30.36  Aligned_cols=97  Identities=20%  Similarity=0.238  Sum_probs=55.3

Q ss_pred             cCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           19 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        19 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      .++.+++-.|+| .|..++.+|+..  +.+++.++.+++....+.+   ..|...  .+...+. +.+...      ...
T Consensus       179 ~~g~~vlV~G~G~vG~~av~~Ak~~--G~~vi~~~~~~~~~~~~~~---~~Ga~~--~i~~~~~-~~~~~~------~~~  244 (357)
T PLN02514        179 QSGLRGGILGLGGVGHMGVKIAKAM--GHHVTVISSSDKKREEALE---HLGADD--YLVSSDA-AEMQEA------ADS  244 (357)
T ss_pred             CCCCeEEEEcccHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHH---hcCCcE--EecCCCh-HHHHHh------cCC
Confidence            356778877654 455666677765  5678888877765443332   345321  1111221 222222      235


Q ss_pred             eeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764           98 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        98 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      +|++|-....   ...++.+.+.++++|.++.-..
T Consensus       245 ~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~G~  276 (357)
T PLN02514        245 LDYIIDTVPV---FHPLEPYLSLLKLDGKLILMGV  276 (357)
T ss_pred             CcEEEECCCc---hHHHHHHHHHhccCCEEEEECC
Confidence            8888743221   2356777889999999887543

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=88.53  E-value=8.2  Score=28.51  Aligned_cols=82  Identities=13%  Similarity=0.116  Sum_probs=44.5

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhC--CCCCEEEEEeCCc-------------------hhHHHHHHHHHhcCCCCcEEE
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTI--PEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINF   76 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~--~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~   76 (188)
                      .....+|+-+|||.  .+..+++.+  ..-++++.+|.+.                   ...+.+++++++.+-.-+++.
T Consensus        18 ~L~~s~VlIiG~gg--lG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~   95 (197)
T cd01492          18 RLRSARILLIGLKG--LGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSV   95 (197)
T ss_pred             HHHhCcEEEEcCCH--HHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEE
Confidence            33456899999864  333333322  2146888888642                   223455566666553334554


Q ss_pred             EEcchHHHHHHHhhcccCCCceeEEEEeCCc
Q 029764           77 IESEALSVLDQLLKYSENEGSFDYAFVDADK  107 (188)
Q Consensus        77 ~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~  107 (188)
                      +.....+..+.+      ..+||+|+.....
T Consensus        96 ~~~~~~~~~~~~------~~~~dvVi~~~~~  120 (197)
T cd01492          96 DTDDISEKPEEF------FSQFDVVVATELS  120 (197)
T ss_pred             EecCccccHHHH------HhCCCEEEECCCC
Confidence            444333322333      3679999876543

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK08324 short chain dehydrogenase; Validated

Probab=88.40  E-value=11  Score=33.51  Aligned_cols=82  Identities=15%  Similarity=0.118  Sum_probs=45.6

Q ss_pred             CCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcc-cCC
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-ENE   95 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~-~~~   95 (188)
                      .++.+|-+|++ |..+..+++.+ ..+.+|+.++.+++..+.+.+.+...   .++.++..|..+.  +....+.. ...
T Consensus       421 ~gk~vLVTGas-ggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~  496 (681)
T PRK08324        421 AGKVALVTGAA-GGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAF  496 (681)
T ss_pred             CCCEEEEecCC-CHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            34678888753 34444444433 13678999999987766655544322   3567777665321  11111100 013


Q ss_pred             CceeEEEEeC
Q 029764           96 GSFDYAFVDA  105 (188)
Q Consensus        96 ~~~D~i~id~  105 (188)
                      +.+|+|+...
T Consensus       497 g~iDvvI~~A  506 (681)
T PRK08324        497 GGVDIVVSNA  506 (681)
T ss_pred             CCCCEEEECC
Confidence            5789998764

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=88.39  E-value=11  Score=29.89  Aligned_cols=101  Identities=23%  Similarity=0.253  Sum_probs=60.8

Q ss_pred             HHcCCCEEEEEccc--chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           17 RLVNAKKTIEIGVF--TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        17 ~~~~~~~vLeiG~g--~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      ...++.+||-.|++  .|..++.+|+..  +.+++.+..+++..+.++    ..+...-+.....+..+.+..+.    .
T Consensus       162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~--g~~v~~~~~~~~~~~~~~----~~g~~~v~~~~~~~~~~~~~~~~----~  231 (341)
T cd08297         162 GLKPGDWVVISGAGGGLGHLGVQYAKAM--GLRVIAIDVGDEKLELAK----ELGADAFVDFKKSDDVEAVKELT----G  231 (341)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHH----HcCCcEEEcCCCccHHHHHHHHh----c
Confidence            34566788888775  667777788875  568999988877655443    23422111111113323333332    1


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ...+|+++-+...   ...+..+++.++++|.++.-
T Consensus       232 ~~~vd~vl~~~~~---~~~~~~~~~~l~~~g~~v~~  264 (341)
T cd08297         232 GGGAHAVVVTAVS---AAAYEQALDYLRPGGTLVCV  264 (341)
T ss_pred             CCCCCEEEEcCCc---hHHHHHHHHHhhcCCEEEEe
Confidence            3579999854322   23466778889999999864

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=88.28  E-value=2.6  Score=33.37  Aligned_cols=34  Identities=6%  Similarity=0.049  Sum_probs=26.7

Q ss_pred             CceeEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764           96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      ..+|+||+........+.++.+.+++++++.++.
T Consensus        71 ~~~D~vilavK~~~~~~~~~~l~~~~~~~~~iv~  104 (313)
T PRK06249         71 PPCDWVLVGLKTTANALLAPLIPQVAAPDAKVLL  104 (313)
T ss_pred             CCCCEEEEEecCCChHhHHHHHhhhcCCCCEEEE
Confidence            6799999986555566788888888999987664

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=88.26  E-value=6.6  Score=27.16  Aligned_cols=35  Identities=17%  Similarity=0.176  Sum_probs=28.1

Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      ...||+||+........+.++.+.+.+.++..+++
T Consensus        65 ~~~~D~viv~vKa~~~~~~l~~l~~~~~~~t~iv~   99 (151)
T PF02558_consen   65 AGPYDLVIVAVKAYQLEQALQSLKPYLDPNTTIVS   99 (151)
T ss_dssp             HSTESEEEE-SSGGGHHHHHHHHCTGEETTEEEEE
T ss_pred             cCCCcEEEEEecccchHHHHHHHhhccCCCcEEEE
Confidence            37899999987666778889999999999976665

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues

Probab=88.17  E-value=7  Score=28.36  Aligned_cols=91  Identities=8%  Similarity=0.098  Sum_probs=47.1

Q ss_pred             HHHHHHcCC-CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCC--CcEEEEEcchHH--HHHH
Q 029764           13 AMLLRLVNA-KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD--HKINFIESEALS--VLDQ   87 (188)
Q Consensus        13 ~~l~~~~~~-~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~~~~~~~d~~~--~~~~   87 (188)
                      ..++...++ ..|+.+|||.=.....+....+ +.+++-+|. |+.+..-++.+...+..  .+.+++..|..+  ....
T Consensus        70 ~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~-~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~  147 (183)
T PF04072_consen   70 REFIAKHPGARQVVNLGAGLDTRAYRLDNPAG-GVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDA  147 (183)
T ss_dssp             HHHHHHHTTESEEEEET-TT--HHHHHHHTTT-TEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHH
T ss_pred             HHhhccCCCCcEEEEcCCCCCchHHHhhcccc-ceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHH
Confidence            333433343 4999999977776666665433 567777777 66666666666654321  234567777653  4444


Q ss_pred             HhhcccCCCceeEEEEeC
Q 029764           88 LLKYSENEGSFDYAFVDA  105 (188)
Q Consensus        88 ~~~~~~~~~~~D~i~id~  105 (188)
                      +.+.+.+....-+++..+
T Consensus       148 L~~~g~~~~~ptl~i~Eg  165 (183)
T PF04072_consen  148 LPKAGFDPDRPTLFIAEG  165 (183)
T ss_dssp             HHHCTT-TTSEEEEEEES
T ss_pred             HHHhCCCCCCCeEEEEcc
Confidence            543322233444555554

It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=88.16  E-value=2.5  Score=32.10  Aligned_cols=75  Identities=16%  Similarity=0.268  Sum_probs=40.8

Q ss_pred             ccchHHHHH--HHhhCC-CCCEEEEEeCCchhHHHHHHH-HHhc-CCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEE
Q 029764           29 VFTGYSLLL--TALTIP-EDGQITAIDVNRETYEIGLPI-IKKA-GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFV  103 (188)
Q Consensus        29 ~g~G~~~~~--la~~~~-~~~~v~~iD~~~~~~~~a~~~-~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~i  103 (188)
                      .|.|-.+..  +|..+. .+.+|..||.||..--..... .... .+++++.+...+-...+....+. .+...||+|++
T Consensus        11 GGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~-a~~~~~d~Vlv   89 (231)
T PF07015_consen   11 GGAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADELTILEDAYEA-AEASGFDFVLV   89 (231)
T ss_pred             CCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccchhhHHHHHHH-HHhcCCCEEEE
Confidence            355654444  444442 378999999988754433322 2222 34556776665544333332211 01246999999


Q ss_pred             e
Q 029764          104 D  104 (188)
Q Consensus       104 d  104 (188)
                      |
T Consensus        90 D   90 (231)
T PF07015_consen   90 D   90 (231)
T ss_pred             e
Confidence            9

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=87.99  E-value=3.5  Score=32.27  Aligned_cols=34  Identities=15%  Similarity=0.167  Sum_probs=26.8

Q ss_pred             CceeEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764           96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      ..+|+||+..........++.+.+.+.++..+++
T Consensus        67 ~~~d~vilavk~~~~~~~~~~l~~~~~~~~~ii~  100 (305)
T PRK12921         67 GPFDLVILAVKAYQLDAAIPDLKPLVGEDTVIIP  100 (305)
T ss_pred             CCCCEEEEEecccCHHHHHHHHHhhcCCCCEEEE
Confidence            6799999987666677888888888888876654

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=87.94  E-value=11  Score=29.55  Aligned_cols=99  Identities=11%  Similarity=0.049  Sum_probs=58.2

Q ss_pred             HcCCCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcc-hHHHHHHHhhcccC
Q 029764           18 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE-ALSVLDQLLKYSEN   94 (188)
Q Consensus        18 ~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~~   94 (188)
                      ..++.+|+-.|+  +.|..++.+|+..  +.+++.+..+++..+.+++    .+...-+.....+ ....+....    .
T Consensus       138 ~~~~~~vlI~ga~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~----~  207 (334)
T PTZ00354        138 VKKGQSVLIHAGASGVGTAAAQLAEKY--GAATIITTSSEEKVDFCKK----LAAIILIRYPDEEGFAPKVKKLT----G  207 (334)
T ss_pred             CCCCCEEEEEcCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcEEEecCChhHHHHHHHHHh----C
Confidence            445668888774  5777888888875  5666677777776666543    3432111111112 222222221    1


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ...+|+++-...    ...+..+++.|+++|.++.-
T Consensus       208 ~~~~d~~i~~~~----~~~~~~~~~~l~~~g~~i~~  239 (334)
T PTZ00354        208 EKGVNLVLDCVG----GSYLSETAEVLAVDGKWIVY  239 (334)
T ss_pred             CCCceEEEECCc----hHHHHHHHHHhccCCeEEEE
Confidence            356899984321    24667788899999988864

>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO)

Probab=87.92  E-value=0.81  Score=29.50  Aligned_cols=76  Identities=24%  Similarity=0.271  Sum_probs=39.3

Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccccCccccCCCC-----CCCCCcccchHHHHHHHHHHhhcCCC
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEE-----QVPDHFRGSSRQAILDLNRSLADDPR  169 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (188)
                      +..+|++++|.......+.+..+...++-||++++--..+......+..     .......- .....+.|.+.+.++++
T Consensus         9 G~e~~~~i~d~~~g~~pnal~a~~gtv~gGGllill~p~~~~w~~~~d~~~~~~~~~~~~~~-~~~F~~rf~~~L~~~~~   87 (92)
T PF08351_consen    9 GQEFDLLIFDAFEGFDPNALAALAGTVRGGGLLILLLPPWESWPQLPDPFSRRLSVPPYTDV-TPRFIRRFIRSLQSDPG   87 (92)
T ss_dssp             T--BSSEEEE-SS---HHHHHHHHTTB-TT-EEEEEES-GGGTTTS-BGGGHHCC--SS-B---HHHHHHHHHHHCCSTT
T ss_pred             CCccCEEEEEccCCCCHHHHHHHhcceecCeEEEEEcCCHHHhhhcchHHHhccccCCCCcc-cHHHHHHHHHHHHHCcC
Confidence            5689999999987777889999999999999988854333221111100     00000011 33456777777777776


Q ss_pred             eE
Q 029764          170 VQ  171 (188)
Q Consensus       170 ~~  171 (188)
                      +.
T Consensus        88 i~   89 (92)
T PF08351_consen   88 II   89 (92)
T ss_dssp             S-
T ss_pred             Cc
Confidence            43

; PDB: 2ZPA_B.

>PRK07671 cystathionine beta-lyase; Provisional

Probab=87.89  E-value=13  Score=30.46  Aligned_cols=122  Identities=12%  Similarity=0.191  Sum_probs=64.0

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCch-hHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029764            5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRE-TYEIGLPIIKKAGVDHKINFIESEALS   83 (188)
Q Consensus         5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~   83 (188)
                      .|...++-..++........+-+++|++.....++ .+.++.+|++.+..-. .+....+.+...|.  .+.++..+-.+
T Consensus        49 ~p~~~~Le~~lA~l~g~~~~~~~~sG~aai~~~~~-~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~--~v~~v~~~d~~  125 (377)
T PRK07671         49 NPTRAALEELIAVLEGGHAGFAFGSGMAAITAVMM-LFSSGDHVILTDDVYGGTYRVMTKVLNRFGI--EHTFVDTSNLE  125 (377)
T ss_pred             ChHHHHHHHHHHHHhCCCceEEeCCHHHHHHHHHH-HhCCCCEEEECCCccchHHHHHHHHHhcCCe--EEEEECCCCHH
Confidence            46677777777776666666668887765544333 3445778887765322 33333444444453  24444332223


Q ss_pred             HHHHHhhcccCCCceeEEEEeCC--ccchHHHHHHHHhccCcC-eEEEEecccc
Q 029764           84 VLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVG-GIAVYDNTLW  134 (188)
Q Consensus        84 ~~~~~~~~~~~~~~~D~i~id~~--~~~~~~~~~~~~~~L~~g-G~lv~~~~~~  134 (188)
                      .+.+..     .....+|++..+  +......++.+.++.+.. ..+++|++..
T Consensus       126 ~l~~ai-----~~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~  174 (377)
T PRK07671        126 EVEEAI-----RPNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFM  174 (377)
T ss_pred             HHHHhc-----CCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCC
Confidence            233321     234578887632  211123345555555554 4666676653

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=87.87  E-value=0.53  Score=31.26  Aligned_cols=33  Identities=15%  Similarity=0.151  Sum_probs=25.3

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCc
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNR   55 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~   55 (188)
                      +....+|||||.|...--|.+.   +-.-.++|...
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~E---Gy~G~GiD~R~   90 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSE---GYPGWGIDARR   90 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhC---CCCcccccccc
Confidence            4557999999999987777664   55678888754

; GO: 0008168 methyltransferase activity

>PRK10083 putative oxidoreductase; Provisional

Probab=87.86  E-value=10  Score=30.02  Aligned_cols=100  Identities=13%  Similarity=0.039  Sum_probs=53.3

Q ss_pred             HHcCCCEEEEEccc-chHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           17 RLVNAKKTIEIGVF-TGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        17 ~~~~~~~vLeiG~g-~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      ...++.+|+-.|+| .|..++.+|+.. . ...+++++.+++..+.+++    .|...-+.....+..+.+..   .   
T Consensus       157 ~~~~g~~vlI~g~g~vG~~~~~~a~~~~G-~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~---~---  225 (339)
T PRK10083        157 GPTEQDVALIYGAGPVGLTIVQVLKGVYN-VKAVIVADRIDERLALAKE----SGADWVINNAQEPLGEALEE---K---  225 (339)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHH----hCCcEEecCccccHHHHHhc---C---
Confidence            34566788888853 233444555542 2 3368888988877766654    34321111111122222211   1   


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ...+|++|-....   ...+...++.|+++|.++.-
T Consensus       226 g~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~  258 (339)
T PRK10083        226 GIKPTLIIDAACH---PSILEEAVTLASPAARIVLM  258 (339)
T ss_pred             CCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEE
Confidence            1234555532221   23567778999999998874

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=87.73  E-value=11  Score=29.27  Aligned_cols=100  Identities=12%  Similarity=0.096  Sum_probs=58.9

Q ss_pred             HHcCCCEEEEEc--ccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           17 RLVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        17 ~~~~~~~vLeiG--~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      ...++.+|+=.|  .+.|..+..+|+..  +.++++++.+++..+.+++    .+...-+.....+..+.+....    .
T Consensus       139 ~~~~~~~vlI~g~~~~~g~~~~~la~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~----~  208 (324)
T cd08244         139 TLTPGDVVLVTAAAGGLGSLLVQLAKAA--GATVVGAAGGPAKTALVRA----LGADVAVDYTRPDWPDQVREAL----G  208 (324)
T ss_pred             CCCCCCEEEEEcCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCCEEEecCCccHHHHHHHHc----C
Confidence            445667888877  45667777788875  5789999888877665533    3432111111112222222221    1


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ...+|+++-....    .....+++.|+++|.++.-
T Consensus       209 ~~~~d~vl~~~g~----~~~~~~~~~l~~~g~~v~~  240 (324)
T cd08244         209 GGGVTVVLDGVGG----AIGRAALALLAPGGRFLTY  240 (324)
T ss_pred             CCCceEEEECCCh----HhHHHHHHHhccCcEEEEE
Confidence            3469999843221    2346778899999988853

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>PTZ00357 methyltransferase; Provisional

Probab=87.51  E-value=3.1  Score=36.84  Aligned_cols=104  Identities=14%  Similarity=0.065  Sum_probs=62.5

Q ss_pred             EEEEEcccchHHHHHHH---hhCCCCCEEEEEeCCchhHHHHHHHHH---hcCC-----CCcEEEEEcchHHHHHHHh-h
Q 029764           23 KTIEIGVFTGYSLLLTA---LTIPEDGQITAIDVNRETYEIGLPIIK---KAGV-----DHKINFIESEALSVLDQLL-K   90 (188)
Q Consensus        23 ~vLeiG~g~G~~~~~la---~~~~~~~~v~~iD~~~~~~~~a~~~~~---~~~~-----~~~~~~~~~d~~~~~~~~~-~   90 (188)
                      .|+-+|+|-|-..-...   +......+|++||-+|..+...+.+..   .+.-     .++++++..|....-.... .
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~  782 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG  782 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence            58999999996544433   333334689999999876545444432   2211     2469999999876522100 0


Q ss_pred             c---ccCCCceeEEEEe-----CCccchHHHHHHHHhccCc----CeE
Q 029764           91 Y---SENEGSFDYAFVD-----ADKDNYCNYHERLMKLLKV----GGI  126 (188)
Q Consensus        91 ~---~~~~~~~D~i~id-----~~~~~~~~~~~~~~~~L~~----gG~  126 (188)
                      +   ....+++|+|+..     ++-+--.+.++.+.+.||+    +|+
T Consensus       783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI  830 (1072)
T PTZ00357        783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI  830 (1072)
T ss_pred             cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence            0   0012479999754     2333445677777777776    665

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=87.48  E-value=5.8  Score=33.79  Aligned_cols=67  Identities=15%  Similarity=0.123  Sum_probs=47.2

Q ss_pred             CcHHHHHHHHHHHHHc--CCCEEEEEcccchHHHHHHHhhCC---CCCEEEEEeCCchhHHHHHHHHHhcCC
Q 029764            4 TAPDAGQLMAMLLRLV--NAKKTIEIGVFTGYSLLLTALTIP---EDGQITAIDVNRETYEIGLPIIKKAGV   70 (188)
Q Consensus         4 ~~~~~~~~l~~l~~~~--~~~~vLeiG~g~G~~~~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~~~~~~   70 (188)
                      |+++..+++..+....  +...+.|..||+|...........   ....+++-|..+.+...++.+..-.+.
T Consensus       199 Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~  270 (501)
T TIGR00497       199 TPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNI  270 (501)
T ss_pred             CcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCC
Confidence            4556667776665533  446899999999997765544332   125699999999999999988654443

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=87.46  E-value=9.3  Score=30.30  Aligned_cols=100  Identities=15%  Similarity=0.182  Sum_probs=56.1

Q ss_pred             CCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           20 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        20 ~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      ++.+|+-.|+|. |..+..+|+... ..++++++.+++..+.+++    .|...-+.....+..+.+..+.    ....+
T Consensus       163 ~g~~vlV~~~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~----lg~~~~~~~~~~~~~~~~~~~~----~~~~~  233 (341)
T PRK05396        163 VGEDVLITGAGPIGIMAAAVAKHVG-ARHVVITDVNEYRLELARK----MGATRAVNVAKEDLRDVMAELG----MTEGF  233 (341)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----hCCcEEecCccccHHHHHHHhc----CCCCC
Confidence            556777667653 566777887753 2368888777765554443    3432111111122223333331    13568


Q ss_pred             eEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           99 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      |+||-....   ...+..+.+.|+++|.++.-.
T Consensus       234 d~v~d~~g~---~~~~~~~~~~l~~~G~~v~~g  263 (341)
T PRK05396        234 DVGLEMSGA---PSAFRQMLDNMNHGGRIAMLG  263 (341)
T ss_pred             CEEEECCCC---HHHHHHHHHHHhcCCEEEEEe
Confidence            988753221   345677788999999988754

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=87.43  E-value=7.9  Score=30.19  Aligned_cols=93  Identities=13%  Similarity=0.026  Sum_probs=52.2

Q ss_pred             EEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhcCCC---CcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           23 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVD---HKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        23 ~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      +|.=+|+|.-  +..+|..+. .+.+|+.++.+++.++..++.    ++.   ..... ..........       ...+
T Consensus         2 ~I~IiG~G~~--G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~----g~~~~~~~~~~-~~~~~~~~~~-------~~~~   67 (304)
T PRK06522          2 KIAILGAGAI--GGLFGAALAQAGHDVTLVARRGAHLDALNEN----GLRLEDGEITV-PVLAADDPAE-------LGPQ   67 (304)
T ss_pred             EEEEECCCHH--HHHHHHHHHhCCCeEEEEECChHHHHHHHHc----CCcccCCceee-cccCCCChhH-------cCCC
Confidence            4777888543  333333221 146899999877665544432    321   11110 0000010111       2679


Q ss_pred             eEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764           99 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      |+|++..........++.+.+.+.++..+++
T Consensus        68 d~vila~k~~~~~~~~~~l~~~l~~~~~iv~   98 (304)
T PRK06522         68 DLVILAVKAYQLPAALPSLAPLLGPDTPVLF   98 (304)
T ss_pred             CEEEEecccccHHHHHHHHhhhcCCCCEEEE
Confidence            9999987666677888888888888776654

>PRK07582 cystathionine gamma-lyase; Validated

Probab=87.41  E-value=11  Score=30.61  Aligned_cols=118  Identities=12%  Similarity=0.061  Sum_probs=65.2

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCc-hhHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029764            5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNR-ETYEIGLPIIKKAGVDHKINFIESEALS   83 (188)
Q Consensus         5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~-~~~~~a~~~~~~~~~~~~~~~~~~d~~~   83 (188)
                      .|...++-+.++... +..++-+++|+......+...+.++.+|++.+..- .....++..+...|.  .+.++..+.. 
T Consensus        50 ~p~~~~Le~~lA~l~-~~~~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~--~v~~v~~~~~-  125 (366)
T PRK07582         50 NPTWRALEAALGELE-GAEALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGV--TVREAPTAGM-  125 (366)
T ss_pred             CccHHHHHHHHHHHc-CCCEEEECCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeE--EEEEECCCCh-
Confidence            456677777777776 56677788887665555544455577888877544 333444444555553  2344332211 


Q ss_pred             HHHHHhhcccCCCceeEEEEeCCc--cchHHHHHHHHhccCc-CeEEEEeccc
Q 029764           84 VLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLKV-GGIAVYDNTL  133 (188)
Q Consensus        84 ~~~~~~~~~~~~~~~D~i~id~~~--~~~~~~~~~~~~~L~~-gG~lv~~~~~  133 (188)
                       ....      ....++|++....  ......++.+.++.+. |..+++|++.
T Consensus       126 -~~~~------~~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~  171 (366)
T PRK07582        126 -AEAA------LAGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTT  171 (366)
T ss_pred             -HHHh------ccCceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCC
Confidence             1111      2456888876421  1112234555555554 5567777765

>PRK08064 cystathionine beta-lyase; Provisional

Probab=87.28  E-value=15  Score=30.14  Aligned_cols=123  Identities=15%  Similarity=0.176  Sum_probs=63.1

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCch-hHHHHHHHHHhcCCCCcEEEEEcchH
Q 029764            4 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRE-TYEIGLPIIKKAGVDHKINFIESEAL   82 (188)
Q Consensus         4 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~   82 (188)
                      ..|...++-+.++........+-+++|+......+. .+.++.+|+..+..-. .+....+.+...|.  .+.++..+..
T Consensus        52 ~~p~~~~le~~lA~l~g~~~~v~~~sG~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~--~v~~v~~~d~  128 (390)
T PRK08064         52 GNPTREALEDIIAELEGGTKGFAFASGMAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSRFGI--EHTFVDMTNL  128 (390)
T ss_pred             CChhHHHHHHHHHHHhCCCCeEEECCHHHHHHHHHH-HhCCCCEEEEccCccchHHHHHHHHHHHcCC--EEEEECCCCH
Confidence            356677777777776655555666776655444442 4555678887765322 33444444455553  3444433222


Q ss_pred             HHHHHHhhcccCCCceeEEEEeCCc--cchHHHHHHHHhccCc-CeEEEEecccc
Q 029764           83 SVLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLKV-GGIAVYDNTLW  134 (188)
Q Consensus        83 ~~~~~~~~~~~~~~~~D~i~id~~~--~~~~~~~~~~~~~L~~-gG~lv~~~~~~  134 (188)
                      +.+....     .....+|++....  ......++.+.++.+. |..+++|+...
T Consensus       129 ~~l~~~l-----~~~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~  178 (390)
T PRK08064        129 EEVAQNI-----KPNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFL  178 (390)
T ss_pred             HHHHHhc-----CCCceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCC
Confidence            3232221     2345788877422  1122233444444444 44666676643

>PRK05939 hypothetical protein; Provisional

Probab=87.22  E-value=15  Score=30.21  Aligned_cols=123  Identities=11%  Similarity=0.131  Sum_probs=66.5

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029764            4 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   83 (188)
Q Consensus         4 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   83 (188)
                      ..|.+..+=+.++........+-+.+|.+.....+...+.++.+|+..+..-......-+.+...|.  .+.++..+-.+
T Consensus        45 g~p~~~~lE~~la~leg~~~~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~--~v~~v~~~d~e  122 (397)
T PRK05939         45 GTPTTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTLRGLGV--EVTMVDATDVQ  122 (397)
T ss_pred             CCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHHHHHHhcCC--EEEEECCCCHH
Confidence            3466667777777887777788888876655555444455577888876532211111223444553  24444332223


Q ss_pred             HHHHHhhcccCCCceeEEEEeCC--ccchHHHHHHHHhccCcCe-EEEEeccc
Q 029764           84 VLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGG-IAVYDNTL  133 (188)
Q Consensus        84 ~~~~~~~~~~~~~~~D~i~id~~--~~~~~~~~~~~~~~L~~gG-~lv~~~~~  133 (188)
                      .+....     ...-.+|++...  +......++.+.++.+..| .+++|++.
T Consensus       123 ~l~~~l-----~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~  170 (397)
T PRK05939        123 NVAAAI-----RPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTM  170 (397)
T ss_pred             HHHHhC-----CCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCc
Confidence            233322     234568887642  2222345666666666655 45555544

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=87.20  E-value=12  Score=30.65  Aligned_cols=123  Identities=17%  Similarity=0.102  Sum_probs=61.8

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029764            5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   84 (188)
Q Consensus         5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   84 (188)
                      .|.+.++=+.++.......++-.++|+......+...+.++.+|+..+..-......-+.+...+.  .+.+...|..++
T Consensus        52 np~~~~lE~~lA~l~g~~~~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~--~v~~~~~d~~~l  129 (385)
T PRK08574         52 NPTLRPLEEALAKLEGGVDALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGV--KVVLAYPSTEDI  129 (385)
T ss_pred             CccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHhhccCc--EEEEECCCHHHH
Confidence            345566666677776667777777766655544444455567777765543322222222333342  233433343233


Q ss_pred             HHHHhhcccCCCceeEEEEeCCc--cchHHHHHHHHhccCcC-eEEEEecccc
Q 029764           85 LDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLKVG-GIAVYDNTLW  134 (188)
Q Consensus        85 ~~~~~~~~~~~~~~D~i~id~~~--~~~~~~~~~~~~~L~~g-G~lv~~~~~~  134 (188)
                      ...+     ......+|++....  ......++.+.++.+.. ..+++|++..
T Consensus       130 ~~~i-----~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a  177 (385)
T PRK08574        130 IEAI-----KEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFA  177 (385)
T ss_pred             HHhc-----CccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCC
Confidence            2222     11256888886422  11111245555555554 4666677653

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=87.18  E-value=14  Score=30.82  Aligned_cols=123  Identities=11%  Similarity=0.108  Sum_probs=66.2

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCc-hhHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029764            5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNR-ETYEIGLPIIKKAGVDHKINFIESEALS   83 (188)
Q Consensus         5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~-~~~~~a~~~~~~~~~~~~~~~~~~d~~~   83 (188)
                      .|....+-..++........+-.++|+......+...+.++.+|+..+..- ......+..+...|.  ++.++..+..+
T Consensus        63 ~p~~~~Le~~lA~leg~~~al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv--~v~~vd~~d~e  140 (431)
T PRK08248         63 NPTTDVFEKRIAALEGGIGALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGI--TVKFVDPSDPE  140 (431)
T ss_pred             CchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCE--EEEEECCCCHH
Confidence            566667777777777777788888877766655544455567777766421 223334444455553  34444333223


Q ss_pred             HHHHHhhcccCCCceeEEEEeCC--ccchHHHHHHHHhccCcCe-EEEEecccc
Q 029764           84 VLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGG-IAVYDNTLW  134 (188)
Q Consensus        84 ~~~~~~~~~~~~~~~D~i~id~~--~~~~~~~~~~~~~~L~~gG-~lv~~~~~~  134 (188)
                      .+.+..     .....+|++...  +......++.+.++.+..| .+|+|++..
T Consensus       141 ~l~~ai-----~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a  189 (431)
T PRK08248        141 NFEAAI-----TDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFA  189 (431)
T ss_pred             HHHHhc-----CCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCC
Confidence            333322     235678888632  2111222345555555545 566666643

>PRK06940 short chain dehydrogenase; Provisional

Probab=87.11  E-value=10  Score=29.23  Aligned_cols=80  Identities=19%  Similarity=0.185  Sum_probs=47.6

Q ss_pred             CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcccCCCcee
Q 029764           22 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSFD   99 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~D   99 (188)
                      +.+|-.|+  |..+..+++.+..+.+|+.++.+++.++...+.+...+  .++.++..|..+.  +..+.+.....+.+|
T Consensus         3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id   78 (275)
T PRK06940          3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVT   78 (275)
T ss_pred             CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence            45666664  46777777777657899999988776665555554433  2466677665331  222211101136789


Q ss_pred             EEEEeC
Q 029764          100 YAFVDA  105 (188)
Q Consensus       100 ~i~id~  105 (188)
                      .++..+
T Consensus        79 ~li~nA   84 (275)
T PRK06940         79 GLVHTA   84 (275)
T ss_pred             EEEECC
Confidence            988764

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=87.10  E-value=12  Score=29.49  Aligned_cols=87  Identities=13%  Similarity=0.151  Sum_probs=49.9

Q ss_pred             CCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           20 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        20 ~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .+++++-+|.|. |...+..++.+  +.+|+.+|.+++....+    ...+.    ++..  . +.+.+.      ...+
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~--Ga~V~v~~r~~~~~~~~----~~~G~----~~~~--~-~~l~~~------l~~a  211 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKAL--GANVTVGARKSAHLARI----TEMGL----SPFH--L-SELAEE------VGKI  211 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHH----HHcCC----eeec--H-HHHHHH------hCCC
Confidence            568999999863 33333444443  57999999987654433    23342    2221  1 122222      2679


Q ss_pred             eEEEEeCCccchHHHHHHHHhccCcCeEEE
Q 029764           99 DYAFVDADKDNYCNYHERLMKLLKVGGIAV  128 (188)
Q Consensus        99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv  128 (188)
                      |+||...+.   .-.-+...+.+++|++++
T Consensus       212 DiVI~t~p~---~~i~~~~l~~~~~g~vII  238 (296)
T PRK08306        212 DIIFNTIPA---LVLTKEVLSKMPPEALII  238 (296)
T ss_pred             CEEEECCCh---hhhhHHHHHcCCCCcEEE
Confidence            999985432   123355667888877655

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=87.05  E-value=3.3  Score=36.26  Aligned_cols=93  Identities=13%  Similarity=0.066  Sum_probs=56.0

Q ss_pred             CEEEEEcccchHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCce
Q 029764           22 KKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSF   98 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~   98 (188)
                      .+|+=+|+  |..+..+++.+.. +..++.+|.|++.++.+++.    |    ...+.||+.+  .+.+.     .-++.
T Consensus       401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~----g----~~v~~GDat~~~~L~~a-----gi~~A  465 (621)
T PRK03562        401 PRVIIAGF--GRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF----G----MKVFYGDATRMDLLESA-----GAAKA  465 (621)
T ss_pred             CcEEEEec--ChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc----C----CeEEEEeCCCHHHHHhc-----CCCcC
Confidence            46888666  6666666665432 46899999999988877652    3    4578888765  33332     23578


Q ss_pred             eEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764           99 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      |++++..+........-...+.+.|+-.++.
T Consensus       466 ~~vvv~~~d~~~n~~i~~~ar~~~p~~~iia  496 (621)
T PRK03562        466 EVLINAIDDPQTSLQLVELVKEHFPHLQIIA  496 (621)
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHhCCCCeEEE
Confidence            8888764333222222233344556555554

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=87.03  E-value=13  Score=29.56  Aligned_cols=99  Identities=15%  Similarity=0.167  Sum_probs=57.5

Q ss_pred             HcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE-cchHHHHHHHhhcccCC
Q 029764           18 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENE   95 (188)
Q Consensus        18 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~   95 (188)
                      ..++.+|+-.|+| .|..+..+|+..  +.++++++.+++..+.+++    .+...-+.... .+....+..+.     .
T Consensus       163 ~~~~~~vlV~g~g~vg~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~~~-----~  231 (345)
T cd08260         163 VKPGEWVAVHGCGGVGLSAVMIASAL--GARVIAVDIDDDKLELARE----LGAVATVNASEVEDVAAAVRDLT-----G  231 (345)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHH----hCCCEEEccccchhHHHHHHHHh-----C
Confidence            4456688887753 445556677764  6789999888887666643    34321111111 22222222221     2


Q ss_pred             CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      +.+|+++-....   ...+...++.|+++|.++.-
T Consensus       232 ~~~d~vi~~~g~---~~~~~~~~~~l~~~g~~i~~  263 (345)
T cd08260         232 GGAHVSVDALGI---PETCRNSVASLRKRGRHVQV  263 (345)
T ss_pred             CCCCEEEEcCCC---HHHHHHHHHHhhcCCEEEEe
Confidence            379988843221   33566778999999988753

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=86.99  E-value=2.4  Score=34.81  Aligned_cols=51  Identities=18%  Similarity=0.093  Sum_probs=35.8

Q ss_pred             HHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHH
Q 029764           11 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPI   64 (188)
Q Consensus        11 ~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~   64 (188)
                      .....+++.++.+||-|.+| |..++.++..-  -.+|++||+||......+=+
T Consensus        26 vD~~aL~i~~~d~vl~ItSa-G~N~L~yL~~~--P~~I~aVDlNp~Q~aLleLK   76 (380)
T PF11899_consen   26 VDMEALNIGPDDRVLTITSA-GCNALDYLLAG--PKRIHAVDLNPAQNALLELK   76 (380)
T ss_pred             HHHHHhCCCCCCeEEEEccC-CchHHHHHhcC--CceEEEEeCCHHHHHHHHHH
Confidence            33455678888899999875 55555554443  36999999999887666543

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PLN02494 adenosylhomocysteinase

Probab=86.73  E-value=7.7  Score=32.80  Aligned_cols=89  Identities=11%  Similarity=0.084  Sum_probs=53.8

Q ss_pred             cCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           19 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        19 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..+++|+-+|+| .|......++.+  +.+|+.+|.++.....+..    .|.    .+.  +..+.+          ..
T Consensus       252 LaGKtVvViGyG~IGr~vA~~aka~--Ga~VIV~e~dp~r~~eA~~----~G~----~vv--~leEal----------~~  309 (477)
T PLN02494        252 IAGKVAVICGYGDVGKGCAAAMKAA--GARVIVTEIDPICALQALM----EGY----QVL--TLEDVV----------SE  309 (477)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhhHHHHh----cCC----eec--cHHHHH----------hh
Confidence            457899999997 344555555554  5689999998865433322    132    221  222221          45


Q ss_pred             eeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           98 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        98 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      .|+|+......+  -+.....+.+|+|++++--.
T Consensus       310 ADVVI~tTGt~~--vI~~e~L~~MK~GAiLiNvG  341 (477)
T PLN02494        310 ADIFVTTTGNKD--IIMVDHMRKMKNNAIVCNIG  341 (477)
T ss_pred             CCEEEECCCCcc--chHHHHHhcCCCCCEEEEcC
Confidence            798887432221  22366778999999998653

>PRK08655 prephenate dehydrogenase; Provisional

Probab=86.72  E-value=5.5  Score=33.33  Aligned_cols=87  Identities=14%  Similarity=0.097  Sum_probs=45.6

Q ss_pred             EEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029764           23 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  101 (188)
Q Consensus        23 ~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i  101 (188)
                      +|.=|| |.|..+.+++..+. .+.+|+++|.+++.....   ....+.    .. ..+..+.          ....|+|
T Consensus         2 kI~IIG-G~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~---a~~~gv----~~-~~~~~e~----------~~~aDvV   62 (437)
T PRK08655          2 KISIIG-GTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEV---AKELGV----EY-ANDNIDA----------AKDADIV   62 (437)
T ss_pred             EEEEEe-cCCHHHHHHHHHHHHCCCEEEEEECChHHHHHH---HHHcCC----ee-ccCHHHH----------hccCCEE
Confidence            456676 23444444444432 145899999887654221   222231    11 1222111          1456888


Q ss_pred             EEeCCccchHHHHHHHHhccCcCeEEE
Q 029764          102 FVDADKDNYCNYHERLMKLLKVGGIAV  128 (188)
Q Consensus       102 ~id~~~~~~~~~~~~~~~~L~~gG~lv  128 (188)
                      ++..+.......++.+.+.+++|.+++
T Consensus        63 Ilavp~~~~~~vl~~l~~~l~~~~iVi   89 (437)
T PRK08655         63 IISVPINVTEDVIKEVAPHVKEGSLLM   89 (437)
T ss_pred             EEecCHHHHHHHHHHHHhhCCCCCEEE
Confidence            877665555666677777777766444

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=86.68  E-value=12  Score=29.93  Aligned_cols=94  Identities=16%  Similarity=0.118  Sum_probs=54.9

Q ss_pred             CCEEEEEcccc-h-HHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHH-------hcCCC-----CcEEEEEcchHHHHH
Q 029764           21 AKKTIEIGVFT-G-YSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK-------KAGVD-----HKINFIESEALSVLD   86 (188)
Q Consensus        21 ~~~vLeiG~g~-G-~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-------~~~~~-----~~~~~~~~d~~~~~~   86 (188)
                      .++|--||+|+ | .++..++.+   +.+|+..|.+++..+.+++.+.       +.+..     .++++. .+..    
T Consensus         7 i~~VaVIGaG~MG~giA~~~a~a---G~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~----   78 (321)
T PRK07066          7 IKTFAAIGSGVIGSGWVARALAH---GLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIE----   78 (321)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhC---CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHH----
Confidence            36788999973 2 344445543   7899999999988776655433       12211     122221 1211    


Q ss_pred             HHhhcccCCCceeEEEEeCC--ccchHHHHHHHHhccCcCeEEE
Q 029764           87 QLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAV  128 (188)
Q Consensus        87 ~~~~~~~~~~~~D~i~id~~--~~~~~~~~~~~~~~L~~gG~lv  128 (188)
                      ..      -..-|+|+-...  ..--..++..+.+.++++.+|.
T Consensus        79 ~a------v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIla  116 (321)
T PRK07066         79 AC------VADADFIQESAPEREALKLELHERISRAAKPDAIIA  116 (321)
T ss_pred             HH------hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEE
Confidence            11      246788886532  2223567788888899887443

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=86.67  E-value=12  Score=29.83  Aligned_cols=101  Identities=12%  Similarity=0.095  Sum_probs=69.6

Q ss_pred             cCCCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           19 VNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        19 ~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      ..+.+|+--+.  ..|.....+|+. . +++|+++--+++..+.+++.   .|+..-+.+...|..+.+.+..     ..
T Consensus       149 k~GetvvVSaAaGaVGsvvgQiAKl-k-G~rVVGiaGg~eK~~~l~~~---lGfD~~idyk~~d~~~~L~~a~-----P~  218 (340)
T COG2130         149 KAGETVVVSAAAGAVGSVVGQIAKL-K-GCRVVGIAGGAEKCDFLTEE---LGFDAGIDYKAEDFAQALKEAC-----PK  218 (340)
T ss_pred             CCCCEEEEEecccccchHHHHHHHh-h-CCeEEEecCCHHHHHHHHHh---cCCceeeecCcccHHHHHHHHC-----CC
Confidence            33445544333  356777888884 3 89999999999988877764   3665556777777776666542     46


Q ss_pred             ceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           97 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        97 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      .+|+.|=+-.    -+.++.+.++|+..+.++++...
T Consensus       219 GIDvyfeNVG----g~v~DAv~~~ln~~aRi~~CG~I  251 (340)
T COG2130         219 GIDVYFENVG----GEVLDAVLPLLNLFARIPVCGAI  251 (340)
T ss_pred             CeEEEEEcCC----chHHHHHHHhhccccceeeeeeh
Confidence            7888774421    24578888888999888887655

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=86.51  E-value=11  Score=31.48  Aligned_cols=135  Identities=13%  Similarity=0.155  Sum_probs=75.0

Q ss_pred             CCCEEEEEcc-cch--HHHHHHHhhCC---CCCEEEEEeC-CchhHHHHHHHHHhcCCCCcEEEE-EcchHHHHHHHhhc
Q 029764           20 NAKKTIEIGV-FTG--YSLLLTALTIP---EDGQITAIDV-NRETYEIGLPIIKKAGVDHKINFI-ESEALSVLDQLLKY   91 (188)
Q Consensus        20 ~~~~vLeiG~-g~G--~~~~~la~~~~---~~~~v~~iD~-~~~~~~~a~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~   91 (188)
                      +|..|+-+|- |+|  .++.-||..+.   ...-++++|. .|.+++..+....+.+.+- .... ..|..++...-.+.
T Consensus        99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~-f~~~~~~~Pv~Iak~al~~  177 (451)
T COG0541          99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPF-FGSGTEKDPVEIAKAALEK  177 (451)
T ss_pred             CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCce-ecCCCCCCHHHHHHHHHHH
Confidence            4556787774 344  23344555443   2345788884 6777888888777766431 1111 12344433221111


Q ss_pred             ccCCCceeEEEEeCC--cc---chHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHHHHhhc
Q 029764           92 SENEGSFDYAFVDAD--KD---NYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD  166 (188)
Q Consensus        92 ~~~~~~~D~i~id~~--~~---~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (188)
                       .....||+|++|-.  ++   ...+-+..+...++|.=.+++-|... |.      .        .....++|++.+  
T Consensus       178 -ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~-GQ------d--------A~~~A~aF~e~l--  239 (451)
T COG0541         178 -AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMI-GQ------D--------AVNTAKAFNEAL--  239 (451)
T ss_pred             -HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEeccc-ch------H--------HHHHHHHHhhhc--
Confidence             01367999999932  22   23344566678999998777666553 11      1        344578888876  


Q ss_pred             CCCeEEEEe
Q 029764          167 DPRVQLSHV  175 (188)
Q Consensus       167 ~~~~~~~~l  175 (188)
                        +++.+.+
T Consensus       240 --~itGvIl  246 (451)
T COG0541         240 --GITGVIL  246 (451)
T ss_pred             --CCceEEE
Confidence              4444444

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=86.47  E-value=10  Score=31.21  Aligned_cols=107  Identities=14%  Similarity=0.073  Sum_probs=64.2

Q ss_pred             CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc---chH--HHHHHHhhcccCC
Q 029764           21 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES---EAL--SVLDQLLKYSENE   95 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~--~~~~~~~~~~~~~   95 (188)
                      ...++=-|+|++..-..+++..+++.+|..+.. -.+=+...+.++..|..  +..+..   .+.  +.+.+..+.   .
T Consensus        56 ~~~~ll~gsGt~amEAav~sl~~pgdkVLv~~n-G~FG~R~~~ia~~~g~~--v~~~~~~wg~~v~p~~v~~~L~~---~  129 (383)
T COG0075          56 GDVVLLSGSGTLAMEAAVASLVEPGDKVLVVVN-GKFGERFAEIAERYGAE--VVVLEVEWGEAVDPEEVEEALDK---D  129 (383)
T ss_pred             CcEEEEcCCcHHHHHHHHHhccCCCCeEEEEeC-ChHHHHHHHHHHHhCCc--eEEEeCCCCCCCCHHHHHHHHhc---C
Confidence            356777799999988888888887889988886 33444555556666643  333332   221  222333222   4


Q ss_pred             CceeEEEEeCCc--cchHHHHHHHHhccCcCeEEEEeccc
Q 029764           96 GSFDYAFVDADK--DNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        96 ~~~D~i~id~~~--~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      ..++.|++-+..  ....+.++.+..+.|..|.+++-|..
T Consensus       130 ~~~~~V~~vH~ETSTGvlnpl~~I~~~~k~~g~l~iVDaV  169 (383)
T COG0075         130 PDIKAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAV  169 (383)
T ss_pred             CCccEEEEEeccCcccccCcHHHHHHHHHHcCCEEEEEec
Confidence            688888776432  22344566666666766655554443

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=86.39  E-value=13  Score=28.69  Aligned_cols=97  Identities=19%  Similarity=0.206  Sum_probs=59.8

Q ss_pred             HcCCCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764           18 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        18 ~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      ..++.+||-.|+  +.|..++.+|+..  +.+++++..+++..+.++    ..|.. .+-....+..+.+..+      .
T Consensus       140 ~~~g~~vlV~ga~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~----~~g~~-~~~~~~~~~~~~i~~~------~  206 (320)
T cd08243         140 LQPGDTLLIRGGTSSVGLAALKLAKAL--GATVTATTRSPERAALLK----ELGAD-EVVIDDGAIAEQLRAA------P  206 (320)
T ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHH----hcCCc-EEEecCccHHHHHHHh------C
Confidence            456678888885  5777888888875  578999888877655553    23432 1211112222222222      2


Q ss_pred             CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      .++|+++-...    ...+..+++.|+++|.++...
T Consensus       207 ~~~d~vl~~~~----~~~~~~~~~~l~~~g~~v~~g  238 (320)
T cd08243         207 GGFDKVLELVG----TATLKDSLRHLRPGGIVCMTG  238 (320)
T ss_pred             CCceEEEECCC----hHHHHHHHHHhccCCEEEEEc
Confidence            57998884322    135677789999999988643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=86.24  E-value=13  Score=29.42  Aligned_cols=99  Identities=16%  Similarity=0.237  Sum_probs=58.3

Q ss_pred             HHcCCCEEEEEccc-chHHHHHHHhhCCCCCE-EEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc---chHHHHHHHhhc
Q 029764           17 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIES---EALSVLDQLLKY   91 (188)
Q Consensus        17 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~   91 (188)
                      ...++.+||-.|+| .|..++.+|+..  +.+ +++++.+++....+++    .+..   .++..   +..+.+....  
T Consensus       162 ~~~~g~~VlV~g~g~vg~~~~~la~~~--g~~~v~~~~~s~~~~~~~~~----~g~~---~~~~~~~~~~~~~i~~~~--  230 (343)
T cd08235         162 GIKPGDTVLVIGAGPIGLLHAMLAKAS--GARKVIVSDLNEFRLEFAKK----LGAD---YTIDAAEEDLVEKVRELT--  230 (343)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----hCCc---EEecCCccCHHHHHHHHh--
Confidence            34566788888764 556666677764  456 8888888877665542    2321   22222   2222222221  


Q ss_pred             ccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           92 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        92 ~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                        ....+|+++-....   ...+..+++.|+++|.++.-.
T Consensus       231 --~~~~vd~vld~~~~---~~~~~~~~~~l~~~g~~v~~~  265 (343)
T cd08235         231 --DGRGADVVIVATGS---PEAQAQALELVRKGGRILFFG  265 (343)
T ss_pred             --CCcCCCEEEECCCC---hHHHHHHHHHhhcCCEEEEEe
Confidence              13458988753221   235677788999999888743

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=86.08  E-value=14  Score=28.74  Aligned_cols=98  Identities=13%  Similarity=0.078  Sum_probs=56.5

Q ss_pred             HHHcCCCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcc---hHHHHHHHhh
Q 029764           16 LRLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE---ALSVLDQLLK   90 (188)
Q Consensus        16 ~~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~   90 (188)
                      ....++.+||-.|+  +.|..++.+|+..  +.+++.+.-+++..+.+++    .+..   .++...   ..+.+..+. 
T Consensus       135 ~~~~~g~~vlI~g~~g~ig~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~i~~~~-  204 (324)
T cd08292         135 LGVKPGQWLIQNAAGGAVGKLVAMLAAAR--GINVINLVRRDAGVAELRA----LGIG---PVVSTEQPGWQDKVREAA-  204 (324)
T ss_pred             hCCCCCCEEEEcccccHHHHHHHHHHHHC--CCeEEEEecCHHHHHHHHh----cCCC---EEEcCCCchHHHHHHHHh-
Confidence            34556678887764  4677778888876  5677777655555444433    3432   222222   222233332 


Q ss_pred             cccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           91 YSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        91 ~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                         ....+|+||-....    .....+++.|+++|.++.-
T Consensus       205 ---~~~~~d~v~d~~g~----~~~~~~~~~l~~~g~~v~~  237 (324)
T cd08292         205 ---GGAPISVALDSVGG----KLAGELLSLLGEGGTLVSF  237 (324)
T ss_pred             ---CCCCCcEEEECCCC----hhHHHHHHhhcCCcEEEEE
Confidence               13579998843221    2346778999999988854

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]

Probab=86.06  E-value=2.8  Score=33.18  Aligned_cols=49  Identities=14%  Similarity=0.161  Sum_probs=36.1

Q ss_pred             HHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHh
Q 029764           16 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK   67 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~   67 (188)
                      ++...+.+|+-||+|.-....++++.   ..+|.+||+++..+..-+-.++.
T Consensus        59 m~~g~ghrivtigSGGcn~L~ylsr~---Pa~id~VDlN~ahiAln~lklaA  107 (414)
T COG5379          59 MQLGIGHRIVTIGSGGCNMLAYLSRA---PARIDVVDLNPAHIALNRLKLAA  107 (414)
T ss_pred             HhcCCCcEEEEecCCcchHHHHhhcC---CceeEEEeCCHHHHHHHHHHHHH
Confidence            35667789999999866566666654   46999999999888766555444

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=85.76  E-value=10  Score=29.83  Aligned_cols=98  Identities=14%  Similarity=0.119  Sum_probs=58.4

Q ss_pred             HHcCCCEEEEEccc-chHHHHHHHhhCCCCCE-EEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH-HHhhccc
Q 029764           17 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD-QLLKYSE   93 (188)
Q Consensus        17 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~   93 (188)
                      +..++.+||-+|+| .|..++.+|+..  +.+ ++.++.+++....+++    .+..   .++..+..+... ...    
T Consensus       156 ~~~~g~~vlI~g~g~vg~~~~~la~~~--G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~----  222 (334)
T cd08234         156 GIKPGDSVLVFGAGPIGLLLAQLLKLN--GASRVTVAEPNEEKLELAKK----LGAT---ETVDPSREDPEAQKED----  222 (334)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----hCCe---EEecCCCCCHHHHHHh----
Confidence            44566788888865 356667777764  445 8888888887666543    2322   222222111111 111    


Q ss_pred             CCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           94 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        94 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ....+|+++-....   ...+..+.+.|+++|.++.-
T Consensus       223 ~~~~vd~v~~~~~~---~~~~~~~~~~l~~~G~~v~~  256 (334)
T cd08234         223 NPYGFDVVIEATGV---PKTLEQAIEYARRGGTVLVF  256 (334)
T ss_pred             cCCCCcEEEECCCC---hHHHHHHHHHHhcCCEEEEE
Confidence            13579999853221   34667778999999988764

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=85.74  E-value=4.8  Score=29.21  Aligned_cols=94  Identities=19%  Similarity=0.124  Sum_probs=53.2

Q ss_pred             EEEEEcccchH--HHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc-------C-CC--------CcEEEEEcchHHH
Q 029764           23 KTIEIGVFTGY--SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-------G-VD--------HKINFIESEALSV   84 (188)
Q Consensus        23 ~vLeiG~g~G~--~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-------~-~~--------~~~~~~~~d~~~~   84 (188)
                      +|.-+|+|+=.  ++..++..   +.+|+.+|.+++.++.+++.+...       + ++        .++.+ ..|..+ 
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~---G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~~-   75 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARA---GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLEE-   75 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHT---TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGGG-
T ss_pred             CEEEEcCCHHHHHHHHHHHhC---CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHHH-
Confidence            35667886433  33344443   789999999999998887776541       1 11        12221 222211 


Q ss_pred             HHHHhhcccCCCceeEEEEeC--CccchHHHHHHHHhccCcCeEEEEec
Q 029764           85 LDQLLKYSENEGSFDYAFVDA--DKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        85 ~~~~~~~~~~~~~~D~i~id~--~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                                ....|+|+=..  ..+...+++.++.+.++++..+..+.
T Consensus        76 ----------~~~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnT  114 (180)
T PF02737_consen   76 ----------AVDADLVIEAIPEDLELKQELFAELDEICPPDTILASNT  114 (180)
T ss_dssp             ----------GCTESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--
T ss_pred             ----------HhhhheehhhccccHHHHHHHHHHHHHHhCCCceEEecC
Confidence                      13678777432  22334678899988998888877654

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=85.65  E-value=0.71  Score=35.97  Aligned_cols=38  Identities=16%  Similarity=0.198  Sum_probs=30.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhH
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETY   58 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~   58 (188)
                      ..+++|||+|||+|--.+......  ...+...|.+.+.+
T Consensus       115 ~~~k~vLELgCg~~Lp~i~~~~~~--~~~~~fqD~na~vl  152 (282)
T KOG2920|consen  115 FSGKRVLELGCGAALPGIFAFVKG--AVSVHFQDFNAEVL  152 (282)
T ss_pred             ecCceeEecCCcccccchhhhhhc--cceeeeEecchhhe
Confidence            467899999999999888877653  26788888877766

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=85.36  E-value=16  Score=28.63  Aligned_cols=99  Identities=12%  Similarity=0.070  Sum_probs=57.2

Q ss_pred             HcCCCEEEEEc--ccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764           18 LVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        18 ~~~~~~vLeiG--~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      ..++.+++-.|  ...|..++.+|+..  +.++++++.+++..+.+++    .|...-+.....+..+.+..+.    ..
T Consensus       138 ~~~g~~vlI~g~~g~ig~~~~~lak~~--G~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~----~~  207 (327)
T PRK10754        138 IKPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGSAQKAQRAKK----AGAWQVINYREENIVERVKEIT----GG  207 (327)
T ss_pred             CCCCCEEEEEeCCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----CCCCEEEcCCCCcHHHHHHHHc----CC
Confidence            44566777665  34667777788875  5789999888776655532    3432111111112222223322    13


Q ss_pred             CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ..+|+++ +...   ...+...++.++++|.++.-
T Consensus       208 ~~~d~vl-~~~~---~~~~~~~~~~l~~~g~~v~~  238 (327)
T PRK10754        208 KKVRVVY-DSVG---KDTWEASLDCLQRRGLMVSF  238 (327)
T ss_pred             CCeEEEE-ECCc---HHHHHHHHHHhccCCEEEEE
Confidence            5689777 4322   13456678899999988853

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=85.29  E-value=14  Score=28.99  Aligned_cols=95  Identities=20%  Similarity=0.217  Sum_probs=56.1

Q ss_pred             CCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           21 AKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        21 ~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      +.+||-.|+  +.|..++.+|+... +.+++++..+++..+.+++    .+...-+.. ..+....+...     ....+
T Consensus       149 g~~vlV~ga~g~vg~~~~~~ak~~~-G~~vi~~~~~~~~~~~l~~----~g~~~~~~~-~~~~~~~i~~~-----~~~~v  217 (336)
T TIGR02817       149 KRALLIIGGAGGVGSILIQLARQLT-GLTVIATASRPESQEWVLE----LGAHHVIDH-SKPLKAQLEKL-----GLEAV  217 (336)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHhC-CCEEEEEcCcHHHHHHHHH----cCCCEEEEC-CCCHHHHHHHh-----cCCCC
Confidence            668888874  56677777888642 5689998887766555533    343211111 12222222222     13569


Q ss_pred             eEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764           99 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      |+++ +...  ....+...++.|+++|.++.
T Consensus       218 d~vl-~~~~--~~~~~~~~~~~l~~~G~~v~  245 (336)
T TIGR02817       218 SYVF-SLTH--TDQHFKEIVELLAPQGRFAL  245 (336)
T ss_pred             CEEE-EcCC--cHHHHHHHHHHhccCCEEEE
Confidence            9888 3211  12346777888999998875

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=85.23  E-value=16  Score=28.60  Aligned_cols=100  Identities=17%  Similarity=0.117  Sum_probs=57.1

Q ss_pred             HHcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE-cchHHHHHHHhhcccC
Q 029764           17 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSEN   94 (188)
Q Consensus        17 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~   94 (188)
                      ...++.+|+-.|+| .|..+..+++..  +.+++.++.+++..+.+++    .+....+.... .+....+....    .
T Consensus       157 ~~~~g~~vli~g~g~~g~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~----~  226 (336)
T cd08276         157 PLKPGDTVLVQGTGGVSLFALQFAKAA--GARVIATSSSDEKLERAKA----LGADHVINYRTTPDWGEEVLKLT----G  226 (336)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEcCCcccCHHHHHHHHc----C
Confidence            34455666655553 445556666664  5789999988877666654    23221111111 22223333332    1


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ...+|+++-...    ...+..+++.|+++|.++..
T Consensus       227 ~~~~d~~i~~~~----~~~~~~~~~~l~~~G~~v~~  258 (336)
T cd08276         227 GRGVDHVVEVGG----PGTLAQSIKAVAPGGVISLI  258 (336)
T ss_pred             CCCCcEEEECCC----hHHHHHHHHhhcCCCEEEEE
Confidence            357898884321    23466778999999998863

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=85.22  E-value=9.4  Score=27.46  Aligned_cols=99  Identities=16%  Similarity=0.237  Sum_probs=52.8

Q ss_pred             CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029764           21 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  100 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~  100 (188)
                      +++.+-+|+..-..-..... .. ..+|.+||.++--+.  .+ +     .+++.  .-...++...+...   .++||+
T Consensus         2 ~~~g~V~GS~~PwvEv~aL~-~G-A~~iltveyn~L~i~--~~-~-----~dr~s--si~p~df~~~~~~y---~~~fD~   66 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEVMALQ-HG-AAKILTVEYNKLEIQ--EE-F-----RDRLS--SILPVDFAKNWQKY---AGSFDF   66 (177)
T ss_pred             CceEEEEecCCchhhHHHHH-cC-CceEEEEeecccccC--cc-c-----ccccc--cccHHHHHHHHHHh---hccchh
Confidence            46788888875543333222 22 568999998752211  00 0     11221  11122333333322   578888


Q ss_pred             EEEe-----------CCcc---chHHHHHHHHhccCcCeEEEEecccc
Q 029764          101 AFVD-----------ADKD---NYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus       101 i~id-----------~~~~---~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      +.+-           +++-   .....+..+.++||+||.+++.-+..
T Consensus        67 ~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG  114 (177)
T PF03269_consen   67 AASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVG  114 (177)
T ss_pred             hheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecC
Confidence            7432           1222   22445566778999999999865443

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=85.21  E-value=18  Score=29.59  Aligned_cols=123  Identities=13%  Similarity=0.107  Sum_probs=64.3

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCC-chhHHHHHHHHHhcCCCCcEEEEEcchH
Q 029764            4 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVN-RETYEIGLPIIKKAGVDHKINFIESEAL   82 (188)
Q Consensus         4 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~-~~~~~~a~~~~~~~~~~~~~~~~~~d~~   82 (188)
                      ..|....+=..++........+-+++|+......++ .+.++.+|+..+.. +.........+...|..  +.++..+..
T Consensus        48 ~~p~~~~Le~~la~l~g~~~al~~~SG~~Al~~~l~-~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~--v~~vd~~d~  124 (380)
T PRK06176         48 GNPTRFALEELIADLEGGVKGFAFASGLAGIHAVFS-LFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLS--CTIIDTSDL  124 (380)
T ss_pred             CChhHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHH-HcCCCCEEEEcCCChhHHHHHHHHHHHhcCeE--EEEcCCCCH
Confidence            356667777777776666677777887775554443 44557788886642 22333334444444432  333322222


Q ss_pred             HHHHHHhhcccCCCceeEEEEeCC--ccchHHHHHHHHhccCcCe-EEEEecccc
Q 029764           83 SVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGG-IAVYDNTLW  134 (188)
Q Consensus        83 ~~~~~~~~~~~~~~~~D~i~id~~--~~~~~~~~~~~~~~L~~gG-~lv~~~~~~  134 (188)
                      +.+.+..     .....+|++...  +......++.+.++.+..| .+++|++..
T Consensus       125 e~l~~ai-----~~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a  174 (380)
T PRK06176        125 SQIKKAI-----KPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFA  174 (380)
T ss_pred             HHHHHhc-----CcCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCcc
Confidence            3233321     235678887532  2111223455555556555 555666543

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=85.16  E-value=17  Score=28.86  Aligned_cols=95  Identities=18%  Similarity=0.214  Sum_probs=55.5

Q ss_pred             CCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc---chHHHHHHHhhcccCC
Q 029764           20 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES---EALSVLDQLLKYSENE   95 (188)
Q Consensus        20 ~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~~~~   95 (188)
                      ++.+||-.|+| .|..+..+|+... ..++++++.+++..+.+++    .|..   .++..   +..+.+....     .
T Consensus       175 ~~~~vlI~g~g~vg~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~-----~  241 (350)
T cd08240         175 ADEPVVIIGAGGLGLMALALLKALG-PANIIVVDIDEAKLEAAKA----AGAD---VVVNGSDPDAAKRIIKAA-----G  241 (350)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCc---EEecCCCccHHHHHHHHh-----C
Confidence            55678877764 3455666777653 2378889888777666643    3432   22222   2222222221     2


Q ss_pred             CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      +.+|+++-....   ...++..++.|+++|.++.-
T Consensus       242 ~~~d~vid~~g~---~~~~~~~~~~l~~~g~~v~~  273 (350)
T cd08240         242 GGVDAVIDFVNN---SATASLAFDILAKGGKLVLV  273 (350)
T ss_pred             CCCcEEEECCCC---HHHHHHHHHHhhcCCeEEEE
Confidence            368988842221   23577788999999998864

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=85.10  E-value=3.8  Score=33.65  Aligned_cols=58  Identities=19%  Similarity=0.310  Sum_probs=45.4

Q ss_pred             CcEEEEEcchHHHHHHHhhcccCCCceeEEEE-eC----CccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           72 HKINFIESEALSVLDQLLKYSENEGSFDYAFV-DA----DKDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        72 ~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~i-d~----~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      +++++++++..+.+.+.     ..+++|.+++ |.    +.....+.++.+.+.++|||.+++-+...
T Consensus       275 drv~i~t~si~~~L~~~-----~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~  337 (380)
T PF11899_consen  275 DRVRIHTDSIEEVLRRL-----PPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAV  337 (380)
T ss_pred             CeEEEEeccHHHHHHhC-----CCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCC
Confidence            78999999999988765     2578997754 43    34556778888899999999999876654

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PRK06223 malate dehydrogenase; Reviewed

Probab=85.09  E-value=17  Score=28.66  Aligned_cols=37  Identities=19%  Similarity=0.105  Sum_probs=24.3

Q ss_pred             CEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHH
Q 029764           22 KKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYE   59 (188)
Q Consensus        22 ~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~   59 (188)
                      .+|.-||+|. |......+....-. +++.+|++++..+
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~-ev~L~D~~~~~~~   40 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELG-DVVLFDIVEGVPQ   40 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCe-EEEEEECCCchhH
Confidence            4688899977 66544433332212 8999999888653

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=85.08  E-value=14  Score=28.90  Aligned_cols=99  Identities=16%  Similarity=0.177  Sum_probs=63.5

Q ss_pred             HHcCCCEEEEEc--ccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           17 RLVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        17 ~~~~~~~vLeiG--~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      +..++.+||--.  .|.|.....+++..  +.++++.--+.+..+.|+++    |....+.....|..+.+..+-    .
T Consensus       143 ~vkpGhtVlvhaAAGGVGlll~Ql~ra~--~a~tI~~asTaeK~~~aken----G~~h~I~y~~eD~v~~V~kiT----n  212 (336)
T KOG1197|consen  143 NVKPGHTVLVHAAAGGVGLLLCQLLRAV--GAHTIATASTAEKHEIAKEN----GAEHPIDYSTEDYVDEVKKIT----N  212 (336)
T ss_pred             CCCCCCEEEEEeccccHHHHHHHHHHhc--CcEEEEEeccHHHHHHHHhc----CCcceeeccchhHHHHHHhcc----C
Confidence            356677766543  45566777777764  56788877777777777765    544445555566655544442    2


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      ....|+++=.-..    +.++.-+..||++|.+|.
T Consensus       213 gKGVd~vyDsvG~----dt~~~sl~~Lk~~G~mVS  243 (336)
T KOG1197|consen  213 GKGVDAVYDSVGK----DTFAKSLAALKPMGKMVS  243 (336)
T ss_pred             CCCceeeeccccc----hhhHHHHHHhccCceEEE
Confidence            4578888743222    345666789999999886

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=85.00  E-value=8.8  Score=29.88  Aligned_cols=86  Identities=20%  Similarity=0.154  Sum_probs=51.3

Q ss_pred             EEEEEcccchHHHHHHHhhCC-----CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           23 KTIEIGVFTGYSLLLTALTIP-----EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        23 ~vLeiG~g~G~~~~~la~~~~-----~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      +|.=|||  |..+..++..+-     ...++++.|.+++.++.+.+.   .+    ++. ..+..+..          ..
T Consensus         4 ~IgfIG~--G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~---~g----~~~-~~~~~e~~----------~~   63 (272)
T PRK12491          4 QIGFIGC--GNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDK---YG----ITI-TTNNNEVA----------NS   63 (272)
T ss_pred             eEEEECc--cHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHh---cC----cEE-eCCcHHHH----------hh
Confidence            5677787  555555555331     123699999887665544332   23    222 23332322          34


Q ss_pred             eeEEEEeCCccchHHHHHHHHhccCcCeEEE
Q 029764           98 FDYAFVDADKDNYCNYHERLMKLLKVGGIAV  128 (188)
Q Consensus        98 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv  128 (188)
                      -|+||+...+....+.++.+.+.++++.+++
T Consensus        64 aDiIiLavkP~~~~~vl~~l~~~~~~~~lvI   94 (272)
T PRK12491         64 ADILILSIKPDLYSSVINQIKDQIKNDVIVV   94 (272)
T ss_pred             CCEEEEEeChHHHHHHHHHHHHhhcCCcEEE
Confidence            5999998777777888888877777664433

>PRK09028 cystathionine beta-lyase; Provisional

Probab=84.97  E-value=20  Score=29.54  Aligned_cols=124  Identities=12%  Similarity=0.077  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCc-hhHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029764            6 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNR-ETYEIGLPIIKKAGVDHKINFIESEALSV   84 (188)
Q Consensus         6 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~-~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   84 (188)
                      |....+=+.++.......++-..+|+......+...++++.+|+..+..- .....+...+...|.  .+.++..+..+.
T Consensus        61 pt~~~Le~~iA~le~~~~~~~~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi--~v~~v~~~~~e~  138 (394)
T PRK09028         61 PTHFAFQAAIVELEGGAGTALYPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGI--ETTYYDPMIGEG  138 (394)
T ss_pred             chHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcce--EEEEECCCCHHH
Confidence            33344444555555555677666666555444433455578888887643 333444444555553  244443322233


Q ss_pred             HHHHhhcccCCCceeEEEEeCC--ccchHHHHHHHHhccCcCe-EEEEeccccCc
Q 029764           85 LDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGG-IAVYDNTLWGG  136 (188)
Q Consensus        85 ~~~~~~~~~~~~~~D~i~id~~--~~~~~~~~~~~~~~L~~gG-~lv~~~~~~~g  136 (188)
                      +....     ...-.+|++...  +......++.+.++.+..| .+++|++...+
T Consensus       139 l~~~l-----~~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p  188 (394)
T PRK09028        139 IRELI-----RPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASP  188 (394)
T ss_pred             HHHhc-----CcCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCcccc
Confidence            33322     234678888742  3233455677777777655 55666666443

>PRK07877 hypothetical protein; Provisional

Probab=84.83  E-value=15  Score=32.96  Aligned_cols=82  Identities=11%  Similarity=0.115  Sum_probs=49.3

Q ss_pred             HcCCCEEEEEcccchHHHHH-HHhhCCCC-CEEEEEeCCc------------------hhHHHHHHHHHhcCCCCcEEEE
Q 029764           18 LVNAKKTIEIGVFTGYSLLL-TALTIPED-GQITAIDVNR------------------ETYEIGLPIIKKAGVDHKINFI   77 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~-la~~~~~~-~~v~~iD~~~------------------~~~~~a~~~~~~~~~~~~~~~~   77 (188)
                      ..+..+|+-+|||.|+.... |+.. . . ++++.+|.+.                  ...+.+++.+...+-.-+++.+
T Consensus       104 ~L~~~~V~IvG~GlGs~~a~~Lara-G-vvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~  181 (722)
T PRK07877        104 RLGRLRIGVVGLSVGHAIAHTLAAE-G-LCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVF  181 (722)
T ss_pred             HHhcCCEEEEEecHHHHHHHHHHHc-c-CCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEE
Confidence            34556899999998875544 4443 1 2 6888887632                  3445566666665533456666


Q ss_pred             EcchH-HHHHHHhhcccCCCceeEEEEeCCc
Q 029764           78 ESEAL-SVLDQLLKYSENEGSFDYAFVDADK  107 (188)
Q Consensus        78 ~~d~~-~~~~~~~~~~~~~~~~D~i~id~~~  107 (188)
                      ..... +.+.++      ...+|+|+-..+.
T Consensus       182 ~~~i~~~n~~~~------l~~~DlVvD~~D~  206 (722)
T PRK07877        182 TDGLTEDNVDAF------LDGLDVVVEECDS  206 (722)
T ss_pred             eccCCHHHHHHH------hcCCCEEEECCCC
Confidence            65433 234444      2568988865443

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=84.81  E-value=17  Score=28.61  Aligned_cols=103  Identities=21%  Similarity=0.170  Sum_probs=53.4

Q ss_pred             HHcCCCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc---chHHHHHHHhhc
Q 029764           17 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES---EALSVLDQLLKY   91 (188)
Q Consensus        17 ~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~   91 (188)
                      ...++.+||-.|+  +.|..++.+|+..  +.+++.+..+++..+.-++.+...+...-+.....   +..+.+..+.  
T Consensus       143 ~~~~g~~vlI~g~~g~vg~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~--  218 (341)
T cd08290         143 KLQPGDWVIQNGANSAVGQAVIQLAKLL--GIKTINVVRDRPDLEELKERLKALGADHVLTEEELRSLLATELLKSAP--  218 (341)
T ss_pred             ccCCCCEEEEccchhHHHHHHHHHHHHc--CCeEEEEEcCCCcchhHHHHHHhcCCCEEEeCcccccccHHHHHHHHc--
Confidence            3456778888774  5677777788875  45665554444222222333333443221111111   2223333221  


Q ss_pred             ccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           92 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        92 ~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                         .+.+|+|+-....    ..+..+++.|+++|.++.-
T Consensus       219 ---~~~~d~vld~~g~----~~~~~~~~~l~~~G~~v~~  250 (341)
T cd08290         219 ---GGRPKLALNCVGG----KSATELARLLSPGGTMVTY  250 (341)
T ss_pred             ---CCCceEEEECcCc----HhHHHHHHHhCCCCEEEEE
Confidence               1268988843221    1234567889999988853

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>PRK08507 prephenate dehydrogenase; Validated

Probab=84.74  E-value=3.8  Score=31.80  Aligned_cols=84  Identities=19%  Similarity=0.167  Sum_probs=48.9

Q ss_pred             EEEEEcccchHHHHHHHhhCCCC---CEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764           23 KTIEIGVFTGYSLLLTALTIPED---GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   99 (188)
Q Consensus        23 ~vLeiG~g~G~~~~~la~~~~~~---~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   99 (188)
                      +|.=||+  |..+..++..+...   .+|+++|.+++..+.+++    .+...   . ..+..    ..       ...|
T Consensus         2 ~I~iIG~--G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~----~g~~~---~-~~~~~----~~-------~~aD   60 (275)
T PRK08507          2 KIGIIGL--GLMGGSLGLALKEKGLISKVYGYDHNELHLKKALE----LGLVD---E-IVSFE----EL-------KKCD   60 (275)
T ss_pred             EEEEEcc--CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH----CCCCc---c-cCCHH----HH-------hcCC
Confidence            3556676  44444444443212   379999998887665432    33211   1 11211    12       2379


Q ss_pred             EEEEeCCccchHHHHHHHHhccCcCeEEE
Q 029764          100 YAFVDADKDNYCNYHERLMKLLKVGGIAV  128 (188)
Q Consensus       100 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv  128 (188)
                      +||+........+.+..+.+ ++++.+++
T Consensus        61 ~Vilavp~~~~~~~~~~l~~-l~~~~iv~   88 (275)
T PRK08507         61 VIFLAIPVDAIIEILPKLLD-IKENTTII   88 (275)
T ss_pred             EEEEeCcHHHHHHHHHHHhc-cCCCCEEE
Confidence            99998777777777788777 77776444

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=84.72  E-value=16  Score=27.96  Aligned_cols=92  Identities=17%  Similarity=0.142  Sum_probs=47.9

Q ss_pred             HcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCc-------------------hhHHHHHHHHHhcCCCCcEEEE
Q 029764           18 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFI   77 (188)
Q Consensus        18 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~   77 (188)
                      ..+..+|+-+||| .|...+..+.... -++++.+|.+.                   ...+.+++.+.+.+..-+++.+
T Consensus        21 ~L~~~~VlvvG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~   99 (240)
T TIGR02355        21 ALKASRVLIVGLGGLGCAASQYLAAAG-VGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPI   99 (240)
T ss_pred             HHhCCcEEEECcCHHHHHHHHHHHHcC-CCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence            3345789999997 3544333333322 46888887532                   2334455666655433334444


Q ss_pred             EcchH-HHHHHHhhcccCCCceeEEEEeCCccchHHHHHH
Q 029764           78 ESEAL-SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHER  116 (188)
Q Consensus        78 ~~d~~-~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~  116 (188)
                      ..... +...++      ...+|+|+...+.......+..
T Consensus       100 ~~~i~~~~~~~~------~~~~DlVvd~~D~~~~r~~ln~  133 (240)
T TIGR02355       100 NAKLDDAELAAL------IAEHDIVVDCTDNVEVRNQLNR  133 (240)
T ss_pred             eccCCHHHHHHH------hhcCCEEEEcCCCHHHHHHHHH
Confidence            43322 123333      3679999866544333333333

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=84.68  E-value=14  Score=27.40  Aligned_cols=82  Identities=17%  Similarity=0.113  Sum_probs=45.8

Q ss_pred             CCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcc-cCC
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-ENE   95 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~-~~~   95 (188)
                      ++++|+-.|++ |..+..+++.+ ..+.+|++++.+++....+.+.+...   .++.++..|..+.  +..+.+.. ...
T Consensus         4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~   79 (238)
T PRK05786          4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVL   79 (238)
T ss_pred             CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence            45788888875 44445555444 23679999998877665554444332   2467777765431  11111110 012


Q ss_pred             CceeEEEEeC
Q 029764           96 GSFDYAFVDA  105 (188)
Q Consensus        96 ~~~D~i~id~  105 (188)
                      +.+|.++...
T Consensus        80 ~~id~ii~~a   89 (238)
T PRK05786         80 NAIDGLVVTV   89 (238)
T ss_pred             CCCCEEEEcC
Confidence            5678887654

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=84.63  E-value=22  Score=29.53  Aligned_cols=125  Identities=18%  Similarity=0.172  Sum_probs=77.3

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEe-CCchhHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029764            5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAID-VNRETYEIGLPIIKKAGVDHKINFIESEALS   83 (188)
Q Consensus         5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD-~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   83 (188)
                      .|....+-..++.......++-.-+|...+...+....+.+.++++.+ +-.......++...+.|..  ..++..+-.+
T Consensus        76 nPt~~~le~~iaal~ga~~~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie--~~~vd~~~~~  153 (409)
T KOG0053|consen   76 NPTRDVLESGIAALEGAAHALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGE--GDFVDVDDLK  153 (409)
T ss_pred             CCchHHHHHHHHHHhCCceEEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCce--eeeechhhHH
Confidence            355556666777788888899999988777777777777788888886 3345556666666655543  3455544433


Q ss_pred             HHHHHhhcccCCCceeEEEEeCC--ccchHHHHHHHHhccCcCe-EEEEeccccCc
Q 029764           84 VLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGG-IAVYDNTLWGG  136 (188)
Q Consensus        84 ~~~~~~~~~~~~~~~D~i~id~~--~~~~~~~~~~~~~~L~~gG-~lv~~~~~~~g  136 (188)
                      -+....     .+..++||+..+  +-.....+..+.++.+..| .+|+||++...
T Consensus       154 ~~~~~i-----~~~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p  204 (409)
T KOG0053|consen  154 KILKAI-----KENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSP  204 (409)
T ss_pred             HHHHhh-----ccCceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcc
Confidence            333321     345899999853  2222233455555555555 66667766544

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=84.54  E-value=16  Score=28.57  Aligned_cols=98  Identities=14%  Similarity=0.131  Sum_probs=57.3

Q ss_pred             HHcCCCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           17 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        17 ~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      ...++.+|+-.|+  +.|..++.+|+..  +.+++.++.+++..+.+++    .+...-+.....+..+.+....     
T Consensus       136 ~~~~~~~vlI~ga~g~ig~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~~~-----  204 (329)
T cd08250         136 EMKSGETVLVTAAAGGTGQFAVQLAKLA--GCHVIGTCSSDEKAEFLKS----LGCDRPINYKTEDLGEVLKKEY-----  204 (329)
T ss_pred             CCCCCCEEEEEeCccHHHHHHHHHHHHc--CCeEEEEeCcHHHHHHHHH----cCCceEEeCCCccHHHHHHHhc-----
Confidence            4456778888874  5667777788775  5678888877766555533    3431111111112222222221     


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      ...+|+++-...    ...+..+++.++++|.++.
T Consensus       205 ~~~vd~v~~~~g----~~~~~~~~~~l~~~g~~v~  235 (329)
T cd08250         205 PKGVDVVYESVG----GEMFDTCVDNLALKGRLIV  235 (329)
T ss_pred             CCCCeEEEECCc----HHHHHHHHHHhccCCeEEE
Confidence            246898874322    2456777889999998875

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>PRK07680 late competence protein ComER; Validated

Probab=84.52  E-value=5.6  Score=30.80  Aligned_cols=87  Identities=15%  Similarity=0.014  Sum_probs=49.7

Q ss_pred             EEEEEcccchHHHHHHHhhCCC-C----CEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           23 KTIEIGVFTGYSLLLTALTIPE-D----GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        23 ~vLeiG~g~G~~~~~la~~~~~-~----~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      +|.=||+  |..+..++..+.. +    ..++..+.+++..+.+.+.   .+   .+.. ..+..+.+          ..
T Consensus         2 ~I~iIG~--G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~---~~---g~~~-~~~~~~~~----------~~   62 (273)
T PRK07680          2 NIGFIGT--GNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKER---YP---GIHV-AKTIEEVI----------SQ   62 (273)
T ss_pred             EEEEECc--cHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHH---cC---CeEE-ECCHHHHH----------Hh
Confidence            3566776  5544444443321 1    3688888887665443322   11   2332 23333322          35


Q ss_pred             eeEEEEeCCccchHHHHHHHHhccCcCeEEE
Q 029764           98 FDYAFVDADKDNYCNYHERLMKLLKVGGIAV  128 (188)
Q Consensus        98 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv  128 (188)
                      .|+||+...+....+.++.+.+.++++..++
T Consensus        63 aDiVilav~p~~~~~vl~~l~~~l~~~~~ii   93 (273)
T PRK07680         63 SDLIFICVKPLDIYPLLQKLAPHLTDEHCLV   93 (273)
T ss_pred             CCEEEEecCHHHHHHHHHHHHhhcCCCCEEE
Confidence            6899988766666777788877887776544

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=84.49  E-value=8.5  Score=32.45  Aligned_cols=93  Identities=16%  Similarity=0.168  Sum_probs=56.6

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCC-CCEEE------EEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQIT------AIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   89 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~-~~~v~------~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   89 (188)
                      ...++++|+-||||  ..+...|..+.. +..++      +||.+....+.|++.    |+      ...+..+.+    
T Consensus        32 ~~LkgKtIaIIGyG--SqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~d----GF------~v~~~~Ea~----   95 (487)
T PRK05225         32 SYLKGKKIVIVGCG--AQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATEN----GF------KVGTYEELI----   95 (487)
T ss_pred             HHhCCCEEEEEccC--HHHHHHhCCCccccceeEEeccccccccccchHHHHHhc----CC------ccCCHHHHH----
Confidence            45677899999995  444444544431 33444      455555555544432    43      223443332    


Q ss_pred             hcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           90 KYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        90 ~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                            ...|+|++-.+......+.+.+.+.||+|..|.+.-
T Consensus        96 ------~~ADvVviLlPDt~q~~v~~~i~p~LK~Ga~L~fsH  131 (487)
T PRK05225         96 ------PQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYSH  131 (487)
T ss_pred             ------HhCCEEEEcCChHHHHHHHHHHHhhCCCCCEEEecC
Confidence                  467888876544344556688899999999999854

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=84.25  E-value=8.9  Score=28.52  Aligned_cols=71  Identities=11%  Similarity=0.003  Sum_probs=40.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..+++||-+|.|  .++..-++.+ ..+++|+.++.+..  ...++. ...   .+++++.++....  .       ...
T Consensus         7 l~gk~vlVvGgG--~va~rk~~~Ll~~ga~VtVvsp~~~--~~l~~l-~~~---~~i~~~~~~~~~~--d-------l~~   69 (205)
T TIGR01470         7 LEGRAVLVVGGG--DVALRKARLLLKAGAQLRVIAEELE--SELTLL-AEQ---GGITWLARCFDAD--I-------LEG   69 (205)
T ss_pred             cCCCeEEEECcC--HHHHHHHHHHHHCCCEEEEEcCCCC--HHHHHH-HHc---CCEEEEeCCCCHH--H-------hCC
Confidence            346789999985  3333322222 22678888876543  222222 222   2688888775421  2       267


Q ss_pred             eeEEEEeCC
Q 029764           98 FDYAFVDAD  106 (188)
Q Consensus        98 ~D~i~id~~  106 (188)
                      +|+|++..+
T Consensus        70 ~~lVi~at~   78 (205)
T TIGR01470        70 AFLVIAATD   78 (205)
T ss_pred             cEEEEECCC
Confidence            999998643

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=84.15  E-value=17  Score=27.96  Aligned_cols=100  Identities=17%  Similarity=0.264  Sum_probs=58.2

Q ss_pred             HHcCCCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           17 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        17 ~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      ...++.+|+-.|+  +.|..++.+++..  +.+++.++.+++..+.+++    .+...-+.....+..+.+....    .
T Consensus       136 ~~~~~~~vli~g~~~~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~i~~~~----~  205 (323)
T cd08241         136 RLQPGETVLVLGAAGGVGLAAVQLAKAL--GARVIAAASSEEKLALARA----LGADHVIDYRDPDLRERVKALT----G  205 (323)
T ss_pred             CCCCCCEEEEEcCCchHHHHHHHHHHHh--CCEEEEEeCCHHHHHHHHH----cCCceeeecCCccHHHHHHHHc----C
Confidence            3446678998887  4566666677764  5689999888876665543    2432111111122323233321    1


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ...+|+++-....    .....+.+.++++|.++..
T Consensus       206 ~~~~d~v~~~~g~----~~~~~~~~~~~~~g~~v~~  237 (323)
T cd08241         206 GRGVDVVYDPVGG----DVFEASLRSLAWGGRLLVI  237 (323)
T ss_pred             CCCcEEEEECccH----HHHHHHHHhhccCCEEEEE
Confidence            3468988743221    3456677889999988754

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>PRK07063 short chain dehydrogenase; Provisional

Probab=84.10  E-value=16  Score=27.68  Aligned_cols=85  Identities=13%  Similarity=0.108  Sum_probs=49.2

Q ss_pred             CCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcc-cCC
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-ENE   95 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~-~~~   95 (188)
                      +++++|-.|+.. ..+..+++.+ ..+.+|+.++.+++..+...+.+...+...++.++..|..+.  +..+.+.. ...
T Consensus         6 ~~k~vlVtGas~-gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (260)
T PRK07063          6 AGKVALVTGAAQ-GIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF   84 (260)
T ss_pred             CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            467889888754 4444444433 236789999998887776666665422234577777775431  12221110 113


Q ss_pred             CceeEEEEeC
Q 029764           96 GSFDYAFVDA  105 (188)
Q Consensus        96 ~~~D~i~id~  105 (188)
                      +.+|.++...
T Consensus        85 g~id~li~~a   94 (260)
T PRK07063         85 GPLDVLVNNA   94 (260)
T ss_pred             CCCcEEEECC
Confidence            6789888653

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=83.91  E-value=9.5  Score=28.80  Aligned_cols=73  Identities=23%  Similarity=0.240  Sum_probs=47.5

Q ss_pred             EEEEEcccchHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHH-HHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCce
Q 029764           23 KTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLP-IIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSF   98 (188)
Q Consensus        23 ~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~   98 (188)
                      +++=+|+  |..+..+|+.+.. +..|+.||.+++..+.... .+       ....+++|+.+  .+.+.     .-..+
T Consensus         2 ~iiIiG~--G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~-------~~~~v~gd~t~~~~L~~a-----gi~~a   67 (225)
T COG0569           2 KIIIIGA--GRVGRSVARELSEEGHNVVLIDRDEERVEEFLADEL-------DTHVVIGDATDEDVLEEA-----GIDDA   67 (225)
T ss_pred             EEEEECC--cHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhc-------ceEEEEecCCCHHHHHhc-----CCCcC
Confidence            5667777  6666666666643 3589999999987765332 11       35677777754  45543     24689


Q ss_pred             eEEEEeCCccc
Q 029764           99 DYAFVDADKDN  109 (188)
Q Consensus        99 D~i~id~~~~~  109 (188)
                      |++++.-....
T Consensus        68 D~vva~t~~d~   78 (225)
T COG0569          68 DAVVAATGNDE   78 (225)
T ss_pred             CEEEEeeCCCH
Confidence            99988754433

>PRK06914 short chain dehydrogenase; Provisional

Probab=83.88  E-value=17  Score=27.79  Aligned_cols=81  Identities=22%  Similarity=0.179  Sum_probs=47.8

Q ss_pred             CCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH--H---HHHhhcccC
Q 029764           21 AKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--L---DQLLKYSEN   94 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~---~~~~~~~~~   94 (188)
                      .+++|-+|+ +|..+..+++.+ ..+.+|++++-+++..+...+.....+...++.++..|..+.  +   ....+.   
T Consensus         3 ~k~~lItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~---   78 (280)
T PRK06914          3 KKIAIVTGA-SSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKE---   78 (280)
T ss_pred             CCEEEEECC-CchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHh---
Confidence            457788785 344444544433 236789999888776666555554444445688888876542  1   112111   


Q ss_pred             CCceeEEEEeC
Q 029764           95 EGSFDYAFVDA  105 (188)
Q Consensus        95 ~~~~D~i~id~  105 (188)
                      .+..|.|+...
T Consensus        79 ~~~id~vv~~a   89 (280)
T PRK06914         79 IGRIDLLVNNA   89 (280)
T ss_pred             cCCeeEEEECC
Confidence            35789887653

>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.81  E-value=9.7  Score=32.28  Aligned_cols=59  Identities=27%  Similarity=0.376  Sum_probs=41.6

Q ss_pred             CCceeEEEEeC--Cccc---hHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHHHHhhcCC
Q 029764           95 EGSFDYAFVDA--DKDN---YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDP  168 (188)
Q Consensus        95 ~~~~D~i~id~--~~~~---~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (188)
                      .++||+|++|-  ..++   ...-+..+...-+|+=++.+-+++...       .        ....+..|++.+.+++
T Consensus       464 ~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~-------d--------sv~q~~~fn~al~~~~  527 (587)
T KOG0781|consen  464 NQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGN-------D--------SVDQLKKFNRALADHS  527 (587)
T ss_pred             hcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCc-------H--------HHHHHHHHHHHHhcCC
Confidence            47999999993  2223   334455556777888888887777521       1        4566999999999887

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=83.57  E-value=11  Score=29.45  Aligned_cols=79  Identities=13%  Similarity=0.166  Sum_probs=46.1

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcccCCC
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEG   96 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~   96 (188)
                      ++++||-.|+ +|+.+..+++.+- .+.+|++++.++.............+..++++++.+|..+.  +...      ..
T Consensus         3 ~~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~------~~   75 (322)
T PLN02662          3 EGKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSV------VD   75 (322)
T ss_pred             CCCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHH------Hc
Confidence            3567887774 6887777776653 25688888776554332222211112234688898887652  3333      24


Q ss_pred             ceeEEEEeC
Q 029764           97 SFDYAFVDA  105 (188)
Q Consensus        97 ~~D~i~id~  105 (188)
                      .+|.||..+
T Consensus        76 ~~d~Vih~A   84 (322)
T PLN02662         76 GCEGVFHTA   84 (322)
T ss_pred             CCCEEEEeC
Confidence            578887654

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=83.57  E-value=3.8  Score=32.55  Aligned_cols=35  Identities=17%  Similarity=0.188  Sum_probs=29.3

Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      ...+|+|++..-.-+..+.++.+.+.+++...+++
T Consensus        65 ~~~~Dlviv~vKa~q~~~al~~l~~~~~~~t~vl~   99 (307)
T COG1893          65 LGPADLVIVTVKAYQLEEALPSLAPLLGPNTVVLF   99 (307)
T ss_pred             cCCCCEEEEEeccccHHHHHHHhhhcCCCCcEEEE
Confidence            46899999987666778899999999999986665

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=83.43  E-value=10  Score=24.91  Aligned_cols=92  Identities=18%  Similarity=0.144  Sum_probs=52.5

Q ss_pred             EEEEEcccchHHHHH-HHhhCCCCCEEE-EEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029764           23 KTIEIGVFTGYSLLL-TALTIPEDGQIT-AIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  100 (188)
Q Consensus        23 ~vLeiG~g~G~~~~~-la~~~~~~~~v~-~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~  100 (188)
                      +|.=||+|.-..... -+....++.+++ .+|.+++..+.+.+   ..+    +. .-.|..+.+..        ..+|+
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~---~~~----~~-~~~~~~~ll~~--------~~~D~   65 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAE---KYG----IP-VYTDLEELLAD--------EDVDA   65 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHH---HTT----SE-EESSHHHHHHH--------TTESE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHH---Hhc----cc-chhHHHHHHHh--------hcCCE
Confidence            577789865532222 222222356665 46888876665533   334    23 45555555443        58999


Q ss_pred             EEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764          101 AFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus       101 i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      |++..+.....+.   +...++.|--+++.-++
T Consensus        66 V~I~tp~~~h~~~---~~~~l~~g~~v~~EKP~   95 (120)
T PF01408_consen   66 VIIATPPSSHAEI---AKKALEAGKHVLVEKPL   95 (120)
T ss_dssp             EEEESSGGGHHHH---HHHHHHTTSEEEEESSS
T ss_pred             EEEecCCcchHHH---HHHHHHcCCEEEEEcCC
Confidence            9998766554444   44455566677765444

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK06234 methionine gamma-lyase; Provisional

Probab=83.26  E-value=24  Score=29.03  Aligned_cols=124  Identities=12%  Similarity=0.130  Sum_probs=64.8

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCch-hHHHHHHHHHhcCCCCcEEEEEc-chH
Q 029764            5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRE-TYEIGLPIIKKAGVDHKINFIES-EAL   82 (188)
Q Consensus         5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~~~~~~~~~~~~-d~~   82 (188)
                      .|...++-+.++.......++-+++|++.....+...++++.+|+..+..-. ........+...|.  ++.++.. |..
T Consensus        63 ~p~~~~Le~~iA~~~g~~~~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~--~v~~vd~~d~e  140 (400)
T PRK06234         63 NPTSTEVENKLALLEGGEAAVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGV--EVTFVDTSNLE  140 (400)
T ss_pred             CccHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhCCe--EEEEECCCCHH
Confidence            4556677777777766667787877776655545444555677777654221 22222333344443  2344333 333


Q ss_pred             HHHHHHhhcccCCCceeEEEEeCC--ccchHHHHHHHHhccCc---CeEEEEeccccCc
Q 029764           83 SVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKV---GGIAVYDNTLWGG  136 (188)
Q Consensus        83 ~~~~~~~~~~~~~~~~D~i~id~~--~~~~~~~~~~~~~~L~~---gG~lv~~~~~~~g  136 (188)
                      ++...+      ...-.+|++...  +......++.+.++.+.   |-.+++|+++..+
T Consensus       141 ~l~~~i------~~~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~  193 (400)
T PRK06234        141 EVRNAL------KANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTP  193 (400)
T ss_pred             HHHHHh------ccCCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCch
Confidence            332222      234578887642  11111224444444444   6678888876533

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	188
3c3y_A	237	Crystal Structure Of Pfomt, Phenylpropanoid And Fla		4e-75
1sui_A	247	Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase L		5e-64
3r3h_A	242	Crystal Structure Of O-Methyltransferase From Legio		4e-31
3cbg_A	232	Functional And Structural Characterization Of A Cat		9e-31
2avd_A	229	Crystal Structure Of Human Catechol-O-Methyltransfe		2e-29
3tr6_A	225	Structure Of A O-Methyltransferase From Coxiella Bu		1e-25
2hnk_A	239	Crystal Structure Of Sam-dependent O-methyltransfer		3e-23
3tfw_A	248	Crystal Structure Of A Putative O-Methyltransferase		1e-16
3dul_A	223	Crystal Structure Analysis Of The O-Methyltransfera		2e-12
2gpy_A	233	Crystal Structure Of Putative O-methyltransferase F		6e-11
3ntv_A	232	Crystal Structure Of A Putative Caffeoyl-Coa O-Meth		9e-08
3oe4_A	221	Rat Catechol O-Methyltransferase In Complex With A		5e-06
1jr4_A	221	Catechol O-Methyltransferase Bisubstrate-Inhibitor		1e-05
2zlb_A	223	Crystal Structure Of Apo Form Of Rat Catechol-O- Me		1e-05
3bwm_A	214	Crystal Structure Of Human Catechol O-Methyltransfe		5e-05
3a7e_A	216	Crystal Structure Of Human Comt Complexed With Sam		5e-05
3bwy_A	214	Crystal Structure Of Human 108m Catechol O- Methylt		1e-04

>pdb|3C3Y|A Chain A, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid O- Methyltransferase From M. Crystallinum Length = 237

Iteration: 1
 Score =  276 bits (707), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 128/187 (68%), Positives = 159/187 (85%), Gaps = 1/187 (0%)
Query: 2   MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 61
           M T+P AGQLM+ +L+LVNAKKTIE+GVFTGYSLLLTAL+IP+DG+ITAID +RE YEIG
Sbjct: 52  MSTSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIG 111
Query: 62  LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 121
           LP I+KAGV+HKINFIES+A+  LD LL+  E+EGS+D+ FVDADK NY  YHERLMKL+
Sbjct: 112 LPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLV 171
Query: 122 KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGI 181
           KVGGI  YDNTLWGGTVA PE +VPD F   +R+A+++LN+ LA DPR+++ H+ LGDGI
Sbjct: 172 KVGGIVAYDNTLWGGTVAQPESEVPD-FMKENREAVIELNKLLAADPRIEIVHLPLGDGI 230
Query: 182 TICRRIF 188
           T CRR++
Sbjct: 231 TFCRRLY 237

>pdb|1SUI|A Chain A, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase Length = 247

Iteration: 1
 Score =  239 bits (611), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 110/187 (58%), Positives = 147/187 (78%)
Query: 1   MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI 60
           +M T+ D GQ ++MLL+L+NAK T+EIGV+TGYSLL TAL IPEDG+I A+D+N+E YE+
Sbjct: 60  IMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYEL 119
Query: 61  GLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL 120
           GLP+IKKAGVDHKI+F E  AL VLD+++K  +N GS+D+ FVDADKDNY NYH+RL+ L
Sbjct: 120 GLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDL 179
Query: 121 LKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG 180
           +KVGG+  YDNTLW G+V  P +     +    R  +L+LN++LA DPR+++  + +GDG
Sbjct: 180 VKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDG 239
Query: 181 ITICRRI 187
           ITICRRI
Sbjct: 240 ITICRRI 246

>pdb|3R3H|A Chain A, Crystal Structure Of O-Methyltransferase From Legionella Pneumophila Length = 242

Iteration: 1
 Score =  130 bits (328), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 74/189 (39%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 2   MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 61
           M  AP+  Q M ML+RL  AKK +E+G FTGYS L  +L +P+DGQ+   D+N    +  
Sbjct: 42  MQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHA 101
Query: 62  LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG---SFDYAFVDADKDNYCNYHERLM 118
            P  ++A  +HKI      AL  L  LL    NEG    FD+ F+DADK NY NY+E  +
Sbjct: 102 HPYWREAKQEHKIKLRLGPALDTLHSLL----NEGGEHQFDFIFIDADKTNYLNYYELAL 157
Query: 119 KLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALG 178
           KL+   G+   DN  W G V  P +       G +R+ I  LN+ + +D RV +S +A+ 
Sbjct: 158 KLVTPKGLIAIDNIFWDGKVIDPNDT-----SGQTRE-IKKLNQVIKNDSRVFVSLLAIA 211
Query: 179 DGITICRRI 187
           DG+ + + I
Sbjct: 212 DGMFLVQPI 220

>pdb|3CBG|A Chain A, Functional And Structural Characterization Of A Cationdependent O-Methyltransferase From The Cyanobacterium Synechocystis Sp. Strain Pcc 6803 Length = 232

Iteration: 1
 Score =  129 bits (324), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 75/185 (40%), Positives = 103/185 (55%), Gaps = 11/185 (5%)
Query: 2   MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 61
           M  +P+  Q + +L+ L  AK+ +EIGVF GYS L  AL +P DGQI A D +     I 
Sbjct: 54  MQISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIA 113
Query: 62  LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 121
               +KAGV  KI+     AL+ L+QL +  +    FD  F+DADK NY  Y+E  + LL
Sbjct: 114 KKYWQKAGVAEKISLRLGPALATLEQLTQ-GKPLPEFDLIFIDADKRNYPRYYEIGLNLL 172
Query: 122 KVGGIAVYDNTLWGGTVAV--PEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGD 179
           + GG+ V DN LW G V    P+E        +  Q +   NR LA D RV++S + LGD
Sbjct: 173 RRGGLMVIDNVLWHGKVTEVDPQE--------AQTQVLQQFNRDLAQDERVRISVIPLGD 224
Query: 180 GITIC 184
           G+T+ 
Sbjct: 225 GMTLA 229

>pdb|2AVD|A Chain A, Crystal Structure Of Human Catechol-O-Methyltransferase Domain Containing 1 Length = 229

Iteration: 1
 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 71/181 (39%), Positives = 107/181 (59%), Gaps = 7/181 (3%)
Query: 7   DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK 66
           +  QL+A L RL+ AKK +++G FTGYS L  AL +P DG++   +V+ +  E+G P+ +
Sbjct: 56  EQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWR 115
Query: 67  KAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 126
           +A  +HKI+     AL  LD+LL   E  G+FD A VDADK+N   Y+ER ++LL+ GGI
Sbjct: 116 QAEAEHKIDLRLKPALETLDELLAAGEA-GTFDVAVVDADKENCSAYYERCLQLLRPGGI 174
Query: 127 AVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR 186
                 LW G V  P +         + + + +LN  +  D RV +S + LGDG+T+  +
Sbjct: 175 LAVLRVLWRGKVLQPPKG------DVAAECVRNLNERIRRDVRVYISLLPLGDGLTLAFK 228
Query: 187 I 187
           I
Sbjct: 229 I 229

>pdb|3TR6|A Chain A, Structure Of A O-Methyltransferase From Coxiella Burnetii Length = 225

Iteration: 1
 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/183 (36%), Positives = 102/183 (55%), Gaps = 7/183 (3%)
Query: 4   TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLP 63
           TAP+  QL+A+L++L  AKK I+IG FTGYS +   L +P+DG +   DV+ ++  +   
Sbjct: 48  TAPEQAQLLALLVKLXQAKKVIDIGTFTGYSAIAXGLALPKDGTLITCDVDEKSTALAKE 107
Query: 64  IIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKV 123
             +KAG+  KI    S A   L +L+ ++     +D  ++DADK N   Y+E  +KLL+ 
Sbjct: 108 YWEKAGLSDKIGLRLSPAKDTLAELI-HAGQAWQYDLIYIDADKANTDLYYEESLKLLRE 166
Query: 124 GGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITI 183
           GG+   DN L  G VA  E Q  ++      Q I   N+ +  D RV    + +GDG+T+
Sbjct: 167 GGLIAVDNVLRRGQVADEENQSENN------QLIRLFNQKVYKDERVDXILIPIGDGLTL 220
Query: 184 CRR 186
            R+
Sbjct: 221 ARK 223

>pdb|2HNK|A Chain A, Crystal Structure Of Sam-dependent O-methyltransferase From Pathogenic Bacterium Leptospira Interrogans Length = 239

Iteration: 1
 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/195 (35%), Positives = 104/195 (53%), Gaps = 16/195 (8%)
Query: 2   MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 61
           M  +P+ GQ + +L ++  AK+ IEIG FTGYS L  A  +PEDG+I   DV+ E   + 
Sbjct: 42  MQISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVA 101
Query: 62  LPIIKKAGVDHKINFIESEALSVLDQLL----------KYSENEGSFDYAFVDADKDNYC 111
               K+ G+++KI      AL  L  L+           ++    S D  F+DADK+NY 
Sbjct: 102 RKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYP 161
Query: 112 NYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQ 171
           NY+  ++KLLK GG+ + DN LW G+VA    Q P      S   I   N  + +D  V 
Sbjct: 162 NYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEP------STVGIRKFNELVYNDSLVD 215
Query: 172 LSHVALGDGITICRR 186
           +S V + DG+++ R+
Sbjct: 216 VSLVPIADGVSLVRK 230

>pdb|3TFW|A Chain A, Crystal Structure Of A Putative O-Methyltransferase From Klebsiella Pneumoniae Length = 248

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 4/138 (2%)
Query: 5   APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPI 64
           A + GQ +A+L+RL  AK+ +EIG   GYS +  A  +P DGQ+  ++ +    ++    
Sbjct: 48  AANQGQFLALLVRLTQAKRILEIGTLGGYSTIWXARELPADGQLLTLEADAHHAQVAREN 107
Query: 65  IKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG 124
           ++ AGVD ++   E  AL  L+ L +      +FD  F+DADK N  +Y    ++  + G
Sbjct: 108 LQLAGVDQRVTLREGPALQSLESLGECP----AFDLIFIDADKPNNPHYLRWALRYSRPG 163
Query: 125 GIAVYDNTLWGGTVAVPE 142
            + + DN +  G V  P+
Sbjct: 164 TLIIGDNVVRDGEVVNPQ 181

>pdb|3DUL|A Chain A, Crystal Structure Analysis Of The O-Methyltransferase From Bacillus Cereus Length = 223

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 83/169 (49%), Gaps = 14/169 (8%)
Query: 5   APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPI 64
           +P  G+ + +L+++  A+  +EIG   GYS +  A  +   G++  ++ + +  +I    
Sbjct: 43  SPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSN 102
Query: 65  IKKAGVDHKINFIESEALSVLDQLLKYSENEG--SFDYAFVDADKDNYCNYHERLMKLLK 122
           I++A ++ ++      AL  L Q+    ENE    FD+ F+DADK N   Y E  +KL +
Sbjct: 103 IERANLNDRVEVRTGLALDSLQQI----ENEKYEPFDFIFIDADKQNNPAYFEWALKLSR 158
Query: 123 VGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSR-QAILDLNRSLADDPRV 170
            G + + DN        V E +V D+     R Q I      +A +PRV
Sbjct: 159 PGTVIIGDNV-------VREGEVIDNTSNDPRVQGIRRFYELIAAEPRV 200

>pdb|2GPY|A Chain A, Crystal Structure Of Putative O-methyltransferase From Bacillus Halodurans Length = 233

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 9/171 (5%)
Query: 15  LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKI 74
           LL+     + +EIG   GYS +  A  +PE   I +I+ +   YE     +K  G++ +I
Sbjct: 49  LLKXAAPARILEIGTAIGYSAIRXAQALPE-ATIVSIERDERRYEEAHKHVKALGLESRI 107
Query: 75  NFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLW 134
             +  +AL + ++L  Y      FD  F+DA K  Y  + +     ++ GG+ + DN L+
Sbjct: 108 ELLFGDALQLGEKLELYP----LFDVLFIDAAKGQYRRFFDXYSPXVRPGGLILSDNVLF 163
Query: 135 GGTVAVPEEQVPDHFRGSSRQAILD-LNRSLADDPRVQLSHVALGDGITIC 184
            G VA   E   +H R       +D  N+ L + P+       +GDGI I 
Sbjct: 164 RGLVA---ETDIEHKRHKQLATKIDTYNQWLLEHPQYDTRIFPVGDGIAIS 211

>pdb|3NTV|A Chain A, Crystal Structure Of A Putative Caffeoyl-Coa O-Methyltransferase From Staphylococcus Aureus Length = 232

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 76/174 (43%), Gaps = 7/174 (4%)
Query: 11  LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV 70
           L+  L+R  N K  +EIG   GYS    A +I +D  +T I+ N    +     +     
Sbjct: 62  LIKQLIRXNNVKNILEIGTAIGYSSXQFA-SISDDIHVTTIERNETXIQYAKQNLATYHF 120
Query: 71  DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 130
           ++++  IE  AL   + +     N+  +D  F+DA K     + E    LLK  G+ + D
Sbjct: 121 ENQVRIIEGNALEQFENV-----NDKVYDXIFIDAAKAQSKKFFEIYTPLLKHQGLVITD 175
Query: 131 NTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITIC 184
           N L+ G V+        + R   ++ + D N  L   P    + + + DG+ I 
Sbjct: 176 NVLYHGFVSDIGIVRSRNVRQXVKK-VQDYNEWLIKQPGYTTNFLNIDDGLAIS 228

>pdb|3OE4|A Chain A, Rat Catechol O-Methyltransferase In Complex With A Catechol-Type, Purine-Containing Bisubstrate Inhibitor - Humanized Form Length = 221

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 9   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 68
           GQ+M  ++R  +    +E+G + GYS +  A  +    ++  +++N +   I   ++  A
Sbjct: 47  GQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFA 106
Query: 69  GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK--LLKVGGI 126
           G+  K+  +   +  ++ QL K  + + + D  F+D  KD Y      L K  LL+ G +
Sbjct: 107 GLQDKVTILNGASQDLIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTV 165
Query: 127 AVYDNTLWGGTVAVPEEQVPD---HFRGSS 153
            + DN +  GT        PD   + RGSS
Sbjct: 166 LLADNVIVPGT--------PDFLAYVRGSS 187

>pdb|1JR4|A Chain A, Catechol O-Methyltransferase Bisubstrate-Inhibitor Complex Length = 221

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 9   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 68
           GQ+M  ++R  +    +E+G + GYS +  A  +    ++  +++N +   I   ++  A
Sbjct: 47  GQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFA 106
Query: 69  GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK--LLKVGGI 126
           G+  K+  +   +  ++ QL K  + + + D  F+D  KD Y      L K  LL+ G +
Sbjct: 107 GLQDKVTILNGASQDLIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTV 165
Query: 127 AVYDNTLWGGTVAVPEEQVPD---HFRGSS 153
            + DN +  GT        PD   + RGSS
Sbjct: 166 LLADNVIVPGT--------PDFLAYVRGSS 187

>pdb|2ZLB|A Chain A, Crystal Structure Of Apo Form Of Rat Catechol-O- Methyltransferase Length = 223

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 9   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 68
           GQ+M  ++R  +    +E+G + GYS +  A  +    ++  +++N +   I   ++  A
Sbjct: 49  GQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFA 108
Query: 69  GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK--LLKVGGI 126
           G+  K+  +   +  ++ QL K  + + + D  F+D  KD Y      L K  LL+ G +
Sbjct: 109 GLQDKVTILNGASQDLIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTV 167
Query: 127 AVYDNTLWGGTVAVPEEQVPD---HFRGSS 153
            + DN +  GT        PD   + RGSS
Sbjct: 168 LLADNVIVPGT--------PDFLAYVRGSS 189

>pdb|3BWM|A Chain A, Crystal Structure Of Human Catechol O-Methyltransferase With Bound Sam And Dnc Length = 214

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 14/157 (8%)
Query: 2   MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 61
           M      G+++  +++       +E+G + GYS +  A  +    ++  I++N +   I 
Sbjct: 39  MNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAIT 98
Query: 62  LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK-- 119
             ++  AGV  K+  +   +  ++ QL K  + + + D  F+D  KD Y      L +  
Sbjct: 99  QRMVDFAGVKDKVTLVVGASQDIIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEECG 157
Query: 120 LLKVGGIAVYDNTLWGGTVAVPEEQVPD---HFRGSS 153
           LL+ G + + DN +  G         PD   H RGSS
Sbjct: 158 LLRKGTVLLADNVICPGA--------PDFLAHVRGSS 186

>pdb|3A7E|A Chain A, Crystal Structure Of Human Comt Complexed With Sam And 3,5- Dinitrocatechol Length = 216

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 14/157 (8%)
Query: 2   MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 61
           M      G+++  +++       +E+G + GYS +  A  +    ++  I++N +   I 
Sbjct: 42  MNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAIT 101
Query: 62  LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK-- 119
             ++  AGV  K+  +   +  ++ QL K  + + + D  F+D  KD Y      L +  
Sbjct: 102 QRMVDFAGVKDKVTLVVGASQDIIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEECG 160
Query: 120 LLKVGGIAVYDNTLWGGTVAVPEEQVPD---HFRGSS 153
           LL+ G + + DN +  G         PD   H RGSS
Sbjct: 161 LLRKGTVLLADNVICPGA--------PDFLAHVRGSS 189

>pdb|3BWY|A Chain A, Crystal Structure Of Human 108m Catechol O- Methyltransferase Bound With S-Adenosylmethionine And Inhibitor Dinitrocatechol Length = 214

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 14/157 (8%)
Query: 2   MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 61
           M      G+++  +++       +E+G + GYS +  A  +    ++  I++N +   I 
Sbjct: 39  MNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAIT 98
Query: 62  LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK-- 119
             ++  AG+  K+  +   +  ++ QL K  + + + D  F+D  KD Y      L +  
Sbjct: 99  QRMVDFAGMKDKVTLVVGASQDIIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEECG 157
Query: 120 LLKVGGIAVYDNTLWGGTVAVPEEQVPD---HFRGSS 153
           LL+ G + + DN +  G         PD   H RGSS
Sbjct: 158 LLRKGTVLLADNVICPGA--------PDFLAHVRGSS 186

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	188
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	1e-86
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	9e-86
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	8e-80
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	3e-79
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	8e-79
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	3e-78
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	9e-78
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	9e-78
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	3e-77
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	6e-77
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	3e-76
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	2e-73
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	2e-70
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	7e-64
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
2b25_A	336	Hypothetical protein; structural genomics, methyl	3e-04
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	4e-04
3ocj_A	305	Putative exported protein; structural genomics, PS	6e-04

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Length = 237

 Score =  253 bits (649), Expect = 1e-86
 Identities = 127/187 (67%), Positives = 159/187 (85%), Gaps = 1/187 (0%)

Query: 2   MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 61
           M T+P AGQLM+ +L+LVNAKKTIE+GVFTGYSLLLTAL+IP+DG+ITAID +RE YEIG
Sbjct: 52  MSTSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIG 111

Query: 62  LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 121
           LP I+KAGV+HKINFIES+A+  LD LL+  E+EGS+D+ FVDADK NY  YHERLMKL+
Sbjct: 112 LPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLV 171

Query: 122 KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGI 181
           KVGGI  YDNTLWGGTVA PE +VPD  +  +R+A+++LN+ LA DPR+++ H+ LGDGI
Sbjct: 172 KVGGIVAYDNTLWGGTVAQPESEVPDFMK-ENREAVIELNKLLAADPRIEIVHLPLGDGI 230

Query: 182 TICRRIF 188
           T CRR++
Sbjct: 231 TFCRRLY 237

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* Length = 247

 Score =  251 bits (644), Expect = 9e-86
 Identities = 110/187 (58%), Positives = 147/187 (78%)

Query: 1   MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI 60
           +M T+ D GQ ++MLL+L+NAK T+EIGV+TGYSLL TAL IPEDG+I A+D+N+E YE+
Sbjct: 60  IMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYEL 119

Query: 61  GLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL 120
           GLP+IKKAGVDHKI+F E  AL VLD+++K  +N GS+D+ FVDADKDNY NYH+RL+ L
Sbjct: 120 GLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDL 179

Query: 121 LKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG 180
           +KVGG+  YDNTLW G+V  P +     +    R  +L+LN++LA DPR+++  + +GDG
Sbjct: 180 VKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDG 239

Query: 181 ITICRRI 187
           ITICRRI
Sbjct: 240 ITICRRI 246

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} Length = 225

 Score =  236 bits (603), Expect = 8e-80
 Identities = 67/186 (36%), Positives = 104/186 (55%), Gaps = 7/186 (3%)

Query: 1   MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI 60
            M TAP+  QL+A+L++L+ AKK I+IG FTGYS +   L +P+DG +   DV+ ++  +
Sbjct: 45  AMQTAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTAL 104

Query: 61  GLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL 120
                +KAG+  KI    S A   L +L+   +    +D  ++DADK N   Y+E  +KL
Sbjct: 105 AKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQ-AWQYDLIYIDADKANTDLYYEESLKL 163

Query: 121 LKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG 180
           L+ GG+   DN L  G VA  E Q  ++      Q I   N+ +  D RV +  + +GDG
Sbjct: 164 LREGGLIAVDNVLRRGQVADEENQSENN------QLIRLFNQKVYKDERVDMILIPIGDG 217

Query: 181 ITICRR 186
           +T+ R+
Sbjct: 218 LTLARK 223

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} Length = 242

 Score =  235 bits (601), Expect = 3e-79
 Identities = 70/186 (37%), Positives = 100/186 (53%), Gaps = 7/186 (3%)

Query: 2   MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 61
           M  AP+  Q M ML+RL  AKK +E+G FTGYS L  +L +P+DGQ+   D+N    +  
Sbjct: 42  MQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHA 101

Query: 62  LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 121
            P  ++A  +HKI      AL  L  LL     E  FD+ F+DADK NY NY+E  +KL+
Sbjct: 102 HPYWREAKQEHKIKLRLGPALDTLHSLLNEGG-EHQFDFIFIDADKTNYLNYYELALKLV 160

Query: 122 KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGI 181
              G+   DN  W G V  P +           + I  LN+ + +D RV +S +A+ DG+
Sbjct: 161 TPKGLIAIDNIFWDGKVIDPNDTSGQ------TREIKKLNQVIKNDSRVFVSLLAIADGM 214

Query: 182 TICRRI 187
            + + I
Sbjct: 215 FLVQPI 220

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} Length = 232

 Score =  233 bits (597), Expect = 8e-79
 Identities = 45/186 (24%), Positives = 78/186 (41%), Gaps = 7/186 (3%)

Query: 1   MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI 60
           +         L+  L+R+ N K  +EIG   GYS +  A  I +D  +T I+ N    + 
Sbjct: 52  VPIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFAS-ISDDIHVTTIERNETMIQY 110

Query: 61  GLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL 120
               +     ++++  IE  AL   + +     N+  +D  F+DA K     + E    L
Sbjct: 111 AKQNLATYHFENQVRIIEGNALEQFENV-----NDKVYDMIFIDAAKAQSKKFFEIYTPL 165

Query: 121 LKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG 180
           LK  G+ + DN L+ G V+        + R    + + D N  L   P    + + + DG
Sbjct: 166 LKHQGLVITDNVLYHGFVSDIGIVRSRNVR-QMVKKVQDYNEWLIKQPGYTTNFLNIDDG 224

Query: 181 ITICRR 186
           + I  +
Sbjct: 225 LAISIK 230

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} Length = 232

 Score =  232 bits (593), Expect = 3e-78
 Identities = 74/185 (40%), Positives = 102/185 (55%), Gaps = 7/185 (3%)

Query: 2   MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 61
           M  +P+  Q + +L+ L  AK+ +EIGVF GYS L  AL +P DGQI A D +     I 
Sbjct: 54  MQISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIA 113

Query: 62  LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 121
               +KAGV  KI+     AL+ L+QL +  +    FD  F+DADK NY  Y+E  + LL
Sbjct: 114 KKYWQKAGVAEKISLRLGPALATLEQLTQ-GKPLPEFDLIFIDADKRNYPRYYEIGLNLL 172

Query: 122 KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGI 181
           + GG+ V DN LW G V   + Q          Q +   NR LA D RV++S + LGDG+
Sbjct: 173 RRGGLMVIDNVLWHGKVTEVDPQEAQT------QVLQQFNRDLAQDERVRISVIPLGDGM 226

Query: 182 TICRR 186
           T+  +
Sbjct: 227 TLALK 231

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} Length = 248

 Score =  231 bits (592), Expect = 9e-78
 Identities = 51/189 (26%), Positives = 85/189 (44%), Gaps = 15/189 (7%)

Query: 2   MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 61
              A + GQ +A+L+RL  AK+ +EIG   GYS +  A  +P DGQ+  ++ +    ++ 
Sbjct: 45  HDVAANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVA 104

Query: 62  LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 121
              ++ AGVD ++   E  AL  L+ L        +FD  F+DADK N  +Y    ++  
Sbjct: 105 RENLQLAGVDQRVTLREGPALQSLESL----GECPAFDLIFIDADKPNNPHYLRWALRYS 160

Query: 122 KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRV-----QLSHVA 176
           + G + + DN +  G V  P+            Q +      +  +PR+     Q     
Sbjct: 161 RPGTLIIGDNVVRDGEVVNPQSADER------VQGVRQFIEMMGAEPRLTATALQTVGTK 214

Query: 177 LGDGITICR 185
             DG T+  
Sbjct: 215 GWDGFTLAW 223

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} Length = 239

 Score =  231 bits (591), Expect = 9e-78
 Identities = 69/196 (35%), Positives = 103/196 (52%), Gaps = 16/196 (8%)

Query: 1   MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI 60
            M  +P+ GQ + +L ++  AK+ IEIG FTGYS L  A  +PEDG+I   DV+ E   +
Sbjct: 41  NMQISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNV 100

Query: 61  GLPIIKKAGVDHKINFIESEALSVLDQLLK----------YSENEGSFDYAFVDADKDNY 110
                K+ G+++KI      AL  L  L+           ++    S D  F+DADK+NY
Sbjct: 101 ARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENY 160

Query: 111 CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRV 170
            NY+  ++KLLK GG+ + DN LW G+VA    Q P          I   N  + +D  V
Sbjct: 161 PNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEPST------VGIRKFNELVYNDSLV 214

Query: 171 QLSHVALGDGITICRR 186
            +S V + DG+++ R+
Sbjct: 215 DVSLVPIADGVSLVRK 230

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 Length = 229

 Score =  229 bits (586), Expect = 3e-77
 Identities = 70/187 (37%), Positives = 106/187 (56%), Gaps = 7/187 (3%)

Query: 1   MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI 60
                 +  QL+A L RL+ AKK +++G FTGYS L  AL +P DG++   +V+ +  E+
Sbjct: 50  DSMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPEL 109

Query: 61  GLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL 120
           G P+ ++A  +HKI+     AL  LD+LL  +   G+FD A VDADK+N   Y+ER ++L
Sbjct: 110 GRPLWRQAEAEHKIDLRLKPALETLDELLA-AGEAGTFDVAVVDADKENCSAYYERCLQL 168

Query: 121 LKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG 180
           L+ GGI      LW G V  P +           + + +LN  +  D RV +S + LGDG
Sbjct: 169 LRPGGILAVLRVLWRGKVLQPPKGDVAA------ECVRNLNERIRRDVRVYISLLPLGDG 222

Query: 181 ITICRRI 187
           +T+  +I
Sbjct: 223 LTLAFKI 229

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} Length = 233

 Score =  229 bits (585), Expect = 6e-77
 Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 7/186 (3%)

Query: 1   MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI 60
           +        + +  LL++    + +EIG   GYS +  A  +P +  I +I+ +   YE 
Sbjct: 35  VPIMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEE 93

Query: 61  GLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL 120
               +K  G++ +I  +  +AL + ++L    E    FD  F+DA K  Y  + +    +
Sbjct: 94  AHKHVKALGLESRIELLFGDALQLGEKL----ELYPLFDVLFIDAAKGQYRRFFDMYSPM 149

Query: 121 LKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG 180
           ++ GG+ + DN L+ G VA  + +   H +      I   N+ L + P+       +GDG
Sbjct: 150 VRPGGLILSDNVLFRGLVAETDIEHKRHKQ--LATKIDTYNQWLLEHPQYDTRIFPVGDG 207

Query: 181 ITICRR 186
           I I  +
Sbjct: 208 IAISIK 213

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* Length = 223

 Score =  227 bits (580), Expect = 3e-76
 Identities = 47/190 (24%), Positives = 82/190 (43%), Gaps = 13/190 (6%)

Query: 2   MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 61
              +P  G+ + +L+++  A+  +EIG   GYS +  A  +   G++  ++ + +  +I 
Sbjct: 40  HDVSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIA 99

Query: 62  LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 121
              I++A ++ ++      AL  L Q+    E    FD+ F+DADK N   Y E  +KL 
Sbjct: 100 RSNIERANLNDRVEVRTGLALDSLQQIEN--EKYEPFDFIFIDADKQNNPAYFEWALKLS 157

Query: 122 KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRV-----QLSHVA 176
           + G + + DN +  G V       P        Q I      +A +PRV     Q     
Sbjct: 158 RPGTVIIGDNVVREGEVIDNTSNDPR------VQGIRRFYELIAAEPRVSATALQTVGSK 211

Query: 177 LGDGITICRR 186
             DG  +   
Sbjct: 212 GYDGFIMAVV 221

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210

 Score =  219 bits (560), Expect = 2e-73
 Identities = 35/187 (18%), Positives = 71/187 (37%), Gaps = 14/187 (7%)

Query: 1   MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI 60
           +       G+L+ +L R+   +  +  G   G +    A  I    ++  ID +R+  E 
Sbjct: 37  IPIVDRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEH 96

Query: 61  GLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL 120
              ++   G+  ++     + L +          +   D  F+D D  N  +  ER+ + 
Sbjct: 97  ARRMLHDNGLIDRVELQVGDPLGIAA-------GQRDIDILFMDCDVFNGADVLERMNRC 149

Query: 121 LKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG 180
           L    + +  N L  G+VA   E            A+ + N  L+       + V +G+G
Sbjct: 150 LAKNALLIAVNALRRGSVAESHEDP-------ETAALREFNHHLSRRRDFFTTIVPVGNG 202

Query: 181 ITICRRI 187
           + +  R+
Sbjct: 203 VLLGYRL 209

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} Length = 221

 Score =  211 bits (540), Expect = 2e-70
 Identities = 39/191 (20%), Positives = 69/191 (36%), Gaps = 15/191 (7%)

Query: 1   MMGTAPDAGQLMAMLLRLVN---AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRET 57
           +       GQL+  L    N   +   I I    G   L     + ++  +T ID   E 
Sbjct: 34  LPAPDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEH 93

Query: 58  YEIGLPIIKKAGV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHER 116
                 + ++AG    ++ F+ S  L V+ +L        S+   F      +     + 
Sbjct: 94  QRQAKALFREAGYSPSRVRFLLSRPLDVMSRL-----ANDSYQLVFGQVSPMDLKALVDA 148

Query: 117 LMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVA 176
              LL+ GG  V  + L  GT+A    +  D       QA  D +  +       ++ + 
Sbjct: 149 AWPLLRRGGALVLADALLDGTIADQTRKDRDT------QAARDADEYIRSIEGAHVARLP 202

Query: 177 LGDGITICRRI 187
           LG G+T+  + 
Sbjct: 203 LGAGLTVVTKA 213

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... Length = 221

 Score =  195 bits (497), Expect = 7e-64
 Identities = 36/186 (19%), Positives = 72/186 (38%), Gaps = 16/186 (8%)

Query: 1   MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI 60
            M      GQ+M  ++R  +    +E+G + GYS +  A  +    ++  +++N +   I
Sbjct: 39  AMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAI 98

Query: 61  GLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM-- 118
              ++  AG+  K+  +   +  ++ QL K   +  + D  F+D  KD Y      L   
Sbjct: 99  TQQMLNFAGLQDKVTILNGASQDLIPQLKK-KYDVDTLDMVFLDHWKDRYLPDTLLLEKC 157

Query: 119 KLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALG 178
            LL+ G + + DN +  GT                   +   +          L ++ + 
Sbjct: 158 GLLRKGTVLLADNVIVPGTPDFLA-------------YVRGSSSFECTHYSSYLEYMKVV 204

Query: 179 DGITIC 184
           DG+   
Sbjct: 205 DGLEKA 210

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} SCOP: c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* Length = 236

 Score = 45.3 bits (106), Expect = 2e-06
 Identities = 24/148 (16%), Positives = 44/148 (29%), Gaps = 22/148 (14%)

Query: 1   MMGTAPDAGQLMAMLLRLV--NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETY 58
           M          M  L         + +E+G     +   + +      +   I+ N   +
Sbjct: 42  MERWETP---YMHALAAAASSKGGRVLEVGFGMAIAA--SKVQEAPIDEHWIIECNDGVF 96

Query: 59  EIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYH---- 114
           +       +    HK+  ++     V   L      +G FD    D    +   +H    
Sbjct: 97  QRLRDWAPRQT--HKVIPLKGLWEDVAPTLP-----DGHFDGILYDTYPLSEETWHTHQF 149

Query: 115 ----ERLMKLLKVGGIAVYDNTLWGGTV 138
                   +LLK GG+  Y N    G +
Sbjct: 150 NFIKNHAFRLLKPGGVLTYCNLTSWGEL 177

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 2e-05
 Identities = 32/165 (19%), Positives = 54/165 (32%), Gaps = 33/165 (20%)

Query: 40  LTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF--IESEALSVLDQLLKYSENEGS 97
           L++ ED  +   D  ++  ++   I+ K  +DH I      S  L +   LL   E    
Sbjct: 22  LSVFEDAFVDNFDC-KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE--M 78

Query: 98  FDYAFVDADKDNYCNYHERLMKLLKV------GGIAVYD---NTLWGGTVAVPEEQVPDH 148
                 +  + NY    + LM  +K           +Y    + L+       +  V   
Sbjct: 79  VQKFVEEVLRINY----KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-- 132

Query: 149 FRGSSRQAILDLNR---SLADDPRVQLSHVALGDG-----ITICR 185
            R    Q  L L +    L     V +    LG G     + +C 
Sbjct: 133 -R---LQPYLKLRQALLELRPAKNVLI-DGVLGSGKTWVALDVCL 172

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 Length = 336

 Score = 39.4 bits (91), Expect = 3e-04
 Identities = 20/126 (15%), Positives = 43/126 (34%), Gaps = 3/126 (2%)

Query: 6   PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII 65
           P    ++  ++ +      +E G  +G   L  +  +   G++ + +V ++ +++     
Sbjct: 91  PKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNY 150

Query: 66  KKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLK 122
           K      K++ +E    +V       S           DA   D  N           LK
Sbjct: 151 KHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLK 210

Query: 123 VGGIAV 128
            GG+  
Sbjct: 211 HGGVCA 216

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Length = 277

 Score = 38.8 bits (90), Expect = 4e-04
 Identities = 18/103 (17%), Positives = 38/103 (36%), Gaps = 8/103 (7%)

Query: 3   GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGL 62
              P     +AM+L +    + I+ GV +G    + A  +   G++ A +   E  ++  
Sbjct: 95  IVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAE 154

Query: 63  PIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA 105
             + K G+  ++     +     D+           D  F+D 
Sbjct: 155 SNLTKWGLIERVTIKVRDISEGFDE--------KDVDALFLDV 189

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 38.5 bits (89), Expect = 6e-04
 Identities = 20/137 (14%), Positives = 39/137 (28%), Gaps = 15/137 (10%)

Query: 1   MMGTAPDAGQLMAMLLRLVNAKKTI-EIGVFTGYSLLLTALTIPEDGQITAIDVNRETYE 59
           ++ T    G     L R +     +  +       LL    +     Q+  ID + E  +
Sbjct: 98  VLATRERHGHFRRALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALD 157

Query: 60  IGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD------ADKDNYCNY 113
               +     +  +I     +A  +        +    +D    +       D       
Sbjct: 158 GATRLAAGHALAGQITLHRQDAWKL--------DTREGYDLLTSNGLNIYEPDDARVTEL 209

Query: 114 HERLMKLLKVGGIAVYD 130
           + R  + LK GG  V  
Sbjct: 210 YRRFWQALKPGGALVTS 226

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	188
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	100.0
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	100.0
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	100.0
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	100.0
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	100.0
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	100.0
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	100.0
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.98
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.98
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.97
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.96
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.96
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.96
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.95
3cvo_A	202	Methyltransferase-like protein of unknown functio;	99.84
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	99.82
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.76
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.76
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.76
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.76
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.76
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.75
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.75
2o07_A	304	Spermidine synthase; structural genomics, structur	99.75
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.74
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.74
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.73
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.73
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.72
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.72
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.72
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.71
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.71
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.71
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.71
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.71
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.7
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.7
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.7
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.69
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.69
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.68
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.68
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.68
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.68
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.68
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.67
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.67
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.67
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.67
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.67
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.67
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.67
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.66
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.66
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.66
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.66
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.66
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.66
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.66
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.66
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.66
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.65
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.65
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.65
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.65
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.64
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.64
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.64
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.64
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.64
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.64
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.64
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.64
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.63
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.63
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.63
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.63
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.63
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.63
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.63
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.63
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.62
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.62
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.62
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.62
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.62
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.62
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.62
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.61
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.61
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.61
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.61
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.6
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.6
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.6
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.6
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.6
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.6
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.6
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.6
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.6
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.6
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.6
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.6
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.6
3ocj_A	305	Putative exported protein; structural genomics, PS	99.59
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.59
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.59
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.59
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.59
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.58
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.58
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.58
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.58
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.58
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.58
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.58
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.58
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.58
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.58
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.57
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.57
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.57
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.57
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.57
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.57
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.57
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.57
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.57
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.57
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.56
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.56
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.56
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.56
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.56
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.56
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.56
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.55
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.55
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.54
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.54
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.54
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.54
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.54
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.54
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.54
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.53
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.53
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.53
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.53
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.53
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.52
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.52
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.52
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.52
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.52
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.52
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.52
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.52
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.52
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.52
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.52
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.51
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.51
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.51
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.51
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.5
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.5
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.5
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.5
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.5
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.5
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.5
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.5
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.49
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.49
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.49
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.48
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.48
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.48
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.48
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.48
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.48
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.47
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.47
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.47
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.47
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.46
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.46
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.46
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.46
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.46
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.45
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.45
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.45
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.45
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.45
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.45
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.45
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.44
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.44
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.44
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.44
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.44
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.43
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.43
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.43
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.43
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.43
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.43
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.42
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.42
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.42
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.41
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.41
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.41
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.41
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	99.4
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.4
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.4
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.39
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.39
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.36
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.36
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.35
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	99.34
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	99.33
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.33
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.32
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.32
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.32
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.32
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.31
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.3
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.29
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.29
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.28
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.28
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.27
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.27
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	99.27
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.26
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.26
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.25
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.24
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.22
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.2
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.2
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.2
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.2
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.19
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.19
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.19
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.18
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.18
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.18
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.17
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.16
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.15
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.15
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.14
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.13
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	99.11
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	99.11
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	99.08
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.05
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.04
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.02
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.0
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.0
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.97
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.96
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.92
3khk_A	544	Type I restriction-modification system methylation	98.87
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.87
3lkd_A	542	Type I restriction-modification system methyltrans	98.86
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.86
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.84
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.83
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.76
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.74
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.7
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.69
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.67
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.65
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.58
3ufb_A	530	Type I restriction-modification system methyltran	98.3
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	98.27
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.09
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.0
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	97.98
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.96
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.9
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.88
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	97.81
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.62
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.61
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.6
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.59
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	97.55
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.49
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	97.4
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	97.37
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	97.37
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	97.36
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	97.35
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	97.31
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.24
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	97.21
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	97.19
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	97.19
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.1
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.08
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	97.07
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	97.06
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	97.05
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	97.03
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	97.02
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	97.02
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	97.01
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	96.93
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	96.91
3gms_A	340	Putative NADPH:quinone reductase; structural genom	96.91
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	96.9
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	96.89
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	96.89
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	96.87
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	96.86
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	96.84
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	96.82
4eye_A	342	Probable oxidoreductase; structural genomics, niai	96.82
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	96.81
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	96.8
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	96.79
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	96.78
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	96.77
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	96.72
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	96.72
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	96.69
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	96.68
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	96.68
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	96.67
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	96.66
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	96.64
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	96.62
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	96.57
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	96.56
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.48
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	96.44
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	96.4
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	96.4
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	96.39
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	96.37
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	96.37
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	96.34
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	96.31
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	96.24
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	96.16
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	96.16
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	96.13
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	96.1
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	96.09
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	96.08
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	96.08
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	96.05
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	96.03
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	95.91
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.9
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	95.84
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	95.77
2zig_A	297	TTHA0409, putative modification methylase; methylt	95.62
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	95.58
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	95.52
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	95.48
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	95.36
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	95.17
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	95.17
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	95.17
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	95.15
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	95.03
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	95.02
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.01
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	94.88
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	94.83
1id1_A	153	Putative potassium channel protein; RCK domain, E.	94.53
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	94.48
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	94.42
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	94.38
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	94.33
3me5_A	482	Cytosine-specific methyltransferase; structural ge	94.29
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	94.26
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	94.11
3c85_A	183	Putative glutathione-regulated potassium-efflux S	94.08
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	94.08
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	94.08
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	94.01
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	93.88
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	93.84
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	93.81
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	93.73
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	93.62
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	93.55
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	93.55
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	93.43
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	93.39
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	93.26
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	92.96
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	92.76
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	92.66
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	92.36
1lnq_A	336	MTHK channels, potassium channel related protein;	92.34
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	92.3
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	92.27
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	92.19
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	92.08
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	92.02
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	92.02
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	91.99
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	91.81
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	91.7
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	91.6
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	91.56
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	91.49
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	91.27
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	91.12
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	91.11
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	91.05
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	90.94
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	90.92
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	90.8
4g65_A	461	TRK system potassium uptake protein TRKA; structur	90.66
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	90.49
4ezb_A	317	Uncharacterized conserved protein; structural geno	90.39
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	90.34
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	90.17
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	90.11
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	90.01
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	89.97
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	89.91
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	89.87
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	89.8
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	89.73
3t8y_A	164	CHEB, chemotaxis response regulator protein-glutam	89.65
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	89.59
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	89.4
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	89.39
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	89.37
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	89.36
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	89.27
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	89.13
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	89.11
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	89.06
3trk_A	324	Nonstructural polyprotein; hydrolase; 2.40A {Chiku	88.99
4g65_A	461	TRK system potassium uptake protein TRKA; structur	88.79
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	88.56
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	88.45
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	88.37
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	88.23
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	88.06
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	88.0
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	87.99
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	87.95
3to5_A	134	CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, p	87.75
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	87.72
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	87.69
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	87.21
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	87.06
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	86.61
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	86.47
3eod_A	130	Protein HNR; response regulator, phosphoprotein, t	86.44
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	86.35
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	86.31
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	86.3
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	86.1
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	86.03
3f6c_A	134	Positive transcription regulator EVGA; structural	85.84
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	85.74
3eul_A	152	Possible nitrate/nitrite response transcriptional	85.55
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	85.52
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	85.46
3hzh_A	157	Chemotaxis response regulator (CHEY-3); phosphatas	85.4
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	85.36
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	85.29
3cg0_A	140	Response regulator receiver modulated diguanylate	85.12
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	85.12
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	85.08
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	85.07
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	85.06
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	85.05
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	84.97
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	84.96
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	84.93
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	84.75
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	84.74
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	84.73
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	84.71
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	84.62
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	84.53
3lua_A	140	Response regulator receiver protein; two-component	84.28

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=100.00  E-value=2.2e-33  Score=213.15  Aligned_cols=180  Identities=39%  Similarity=0.644  Sum_probs=160.1

Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch
Q 029764            2 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   81 (188)
Q Consensus         2 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   81 (188)
                      |...++.+++|..++...++++|||||||+|++++++|+.++++++|+++|+++++++.|+++++..++.++++++.+|+
T Consensus        42 ~~i~~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda  121 (242)
T 3r3h_A           42 MQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPA  121 (242)
T ss_dssp             TSCCHHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCH
T ss_pred             CccCHHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence            56789999999999999999999999999999999999988768999999999999999999999999988999999999


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHH
Q 029764           82 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLN  161 (188)
Q Consensus        82 ~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  161 (188)
                      .+.++.+.+. ...++||+||+|+....+..+++.+.++|+|||+++++|++|.|.+.++.....      ....+++|+
T Consensus       122 ~~~l~~~~~~-~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~------~~~~~~~~~  194 (242)
T 3r3h_A          122 LDTLHSLLNE-GGEHQFDFIFIDADKTNYLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSG------QTREIKKLN  194 (242)
T ss_dssp             HHHHHHHHHH-HCSSCEEEEEEESCGGGHHHHHHHHHHHEEEEEEEEEECSSSSSCSSCTTCCCH------HHHHHHHHH
T ss_pred             HHHHHHHhhc-cCCCCEeEEEEcCChHHhHHHHHHHHHhcCCCeEEEEECCccCCcccCccccCh------HHHHHHHHH
Confidence            8887765321 012789999999998889999999999999999999999999998877654321      456799999


Q ss_pred             HHhhcCCCeEEEEeecCCceEEEEEcC
Q 029764          162 RSLADDPRVQLSHVALGDGITICRRIF  188 (188)
Q Consensus       162 ~~~~~~~~~~~~~lp~~~G~~~~~~~~  188 (188)
                      +.+..+++|+++++|+++|+++++|++
T Consensus       195 ~~l~~~~~~~~~~lp~~dG~~~~~k~~  221 (242)
T 3r3h_A          195 QVIKNDSRVFVSLLAIADGMFLVQPIA  221 (242)
T ss_dssp             HHHHTCCSEEEEEESSSSCEEEEEEC-
T ss_pred             HHHhhCCCEEEEEEEccCceEEEEEcC
Confidence            999999999999999999999999874

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=100.00  E-value=2.6e-33  Score=210.05  Aligned_cols=174  Identities=22%  Similarity=0.342  Sum_probs=156.2

Q ss_pred             CCcHHHHHHHHHHHHHcCCC---EEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCC-CcEEEEE
Q 029764            3 GTAPDAGQLMAMLLRLVNAK---KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIE   78 (188)
Q Consensus         3 ~~~~~~~~~l~~l~~~~~~~---~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~   78 (188)
                      ...++++++|..++...+++   +|||||||+|++++++++.++++++|+++|+++++++.|+++++..++. +++++++
T Consensus        36 ~i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~  115 (221)
T 3dr5_A           36 APDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLL  115 (221)
T ss_dssp             CCCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEEC
T ss_pred             CCCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEE
Confidence            35789999999999998888   9999999999999999999876899999999999999999999999988 7899999


Q ss_pred             cchHHHHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHH
Q 029764           79 SEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAIL  158 (188)
Q Consensus        79 ~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  158 (188)
                      +|+.+.++.+.     .++||+||+|+....+..+++.+.++|+|||+++++|++|.|.+.++....    +  ....++
T Consensus       116 gda~~~l~~~~-----~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~~----~--~~~~~~  184 (221)
T 3dr5_A          116 SRPLDVMSRLA-----NDSYQLVFGQVSPMDLKALVDAAWPLLRRGGALVLADALLDGTIADQTRKD----R--DTQAAR  184 (221)
T ss_dssp             SCHHHHGGGSC-----TTCEEEEEECCCTTTHHHHHHHHHHHEEEEEEEEETTTTGGGTCSCSSCCC----H--HHHHHH
T ss_pred             cCHHHHHHHhc-----CCCcCeEEEcCcHHHHHHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCCC----h--HHHHHH
Confidence            99988766541     378999999999888999999999999999999999999999887764321    1  455789


Q ss_pred             HHHHHhhcCCCeEEEEeecCCceEEEEEc
Q 029764          159 DLNRSLADDPRVQLSHVALGDGITICRRI  187 (188)
Q Consensus       159 ~~~~~~~~~~~~~~~~lp~~~G~~~~~~~  187 (188)
                      +|++++.++|+++++++|+++|++++++-
T Consensus       185 ~~~~~l~~~~~~~~~~lp~gdGl~~~~~~  213 (221)
T 3dr5_A          185 DADEYIRSIEGAHVARLPLGAGLTVVTKA  213 (221)
T ss_dssp             HHHHHHTTCTTEEEEEESSTTCEEEEEEC
T ss_pred             HHHHHHhhCCCeeEEEeeccchHHHHHHH
Confidence            99999999999999999999999999974

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=100.00  E-value=7.9e-33  Score=209.48  Aligned_cols=186  Identities=68%  Similarity=1.161  Sum_probs=162.4

Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch
Q 029764            2 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   81 (188)
Q Consensus         2 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   81 (188)
                      |...++.++++..++...++++|||||||+|+++.++++.++++++++++|+++++++.|+++++..++.++++++.+|+
T Consensus        52 ~~~~~~~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda  131 (237)
T 3c3y_A           52 MSTSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDA  131 (237)
T ss_dssp             GSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred             CCcCHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence            56789999999999999999999999999999999999998767999999999999999999999999887899999999


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHH
Q 029764           82 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLN  161 (188)
Q Consensus        82 ~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  161 (188)
                      .+.++.+.+.+...++||+||+|++...+..+++.+.++|+|||+++++|++|.|.+..+........+. ....+++|+
T Consensus       132 ~~~l~~l~~~~~~~~~fD~I~~d~~~~~~~~~l~~~~~~L~pGG~lv~d~~~~~g~~~~~~~~~~~~~r~-~~~~i~~~~  210 (237)
T 3c3y_A          132 MLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYDNTLWGGTVAQPESEVPDFMKE-NREAVIELN  210 (237)
T ss_dssp             HHHHHHHHHSTTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECTTGGGGGGSCGGGSCGGGHH-HHHHHHHHH
T ss_pred             HHHHHHHHhccCCCCCcCEEEECCchHHHHHHHHHHHHhcCCCeEEEEecCCcCCccCCCcccchhhHHH-HHHHHHHHH
Confidence            9887765432101368999999999889999999999999999999999999999887764322233344 567799999


Q ss_pred             HHhhcCCCeEEEEeecCCceEEEEEcC
Q 029764          162 RSLADDPRVQLSHVALGDGITICRRIF  188 (188)
Q Consensus       162 ~~~~~~~~~~~~~lp~~~G~~~~~~~~  188 (188)
                      +.+..++++.++.+|+++|+++++|+.
T Consensus       211 ~~l~~~~~~~~~~lp~~dG~~~~~~~~  237 (237)
T 3c3y_A          211 KLLAADPRIEIVHLPLGDGITFCRRLY  237 (237)
T ss_dssp             HHHHHCTTEEEEEECSTTCEEEEEECC
T ss_pred             HHHhcCCCeEEEEEEeCCceEEEEEcC
Confidence            999999999999999999999999873

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=100.00  E-value=2.1e-32  Score=208.39  Aligned_cols=186  Identities=60%  Similarity=1.034  Sum_probs=161.4

Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch
Q 029764            2 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   81 (188)
Q Consensus         2 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   81 (188)
                      |...+++++++..++...++++|||||||+|+++.++++.++++++++++|+++++++.|+++++..++.++++++.+|+
T Consensus        61 ~~~~~~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda  140 (247)
T 1sui_A           61 MTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPA  140 (247)
T ss_dssp             GSCCHHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred             CCcCHHHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCH
Confidence            56789999999999999999999999999999999999998767899999999999999999999999878899999999


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCc-ccchHHHHHHH
Q 029764           82 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHF-RGSSRQAILDL  160 (188)
Q Consensus        82 ~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~  160 (188)
                      .+.++.+...+...++||+||+|+....+..+++.+.++|+|||+++++|++|.|.+..+.....+.. ++ ....+++|
T Consensus       141 ~~~l~~l~~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~-~~~~i~~~  219 (247)
T 1sui_A          141 LPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRY-YRDFVLEL  219 (247)
T ss_dssp             HHHHHHHHHSGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEECTTGGGGGGCCTTSCCCHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHhccCCCCCEEEEEEcCchHHHHHHHHHHHHhCCCCeEEEEecCCcCCcccCCCccchhhhhhH-HHHHHHHH
Confidence            98877653210013689999999988889999999999999999999999999999887754322211 33 56679999


Q ss_pred             HHHhhcCCCeEEEEeecCCceEEEEEcC
Q 029764          161 NRSLADDPRVQLSHVALGDGITICRRIF  188 (188)
Q Consensus       161 ~~~~~~~~~~~~~~lp~~~G~~~~~~~~  188 (188)
                      ++.+..++++....+|+++|+++++|+.
T Consensus       220 ~~~l~~~~~~~~~~lp~~dG~~l~~k~~  247 (247)
T 1sui_A          220 NKALAVDPRIEICMLPVGDGITICRRIK  247 (247)
T ss_dssp             HHHHHTCTTBCCEEECSTTCEEEECBCC
T ss_pred             HHHHhhCCCeEEEEEecCCccEEEEEcC
Confidence            9999999999999999999999999863

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=100.00  E-value=4.4e-31  Score=197.84  Aligned_cols=179  Identities=37%  Similarity=0.590  Sum_probs=158.7

Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch
Q 029764            2 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   81 (188)
Q Consensus         2 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   81 (188)
                      +...+..++++..++...++.+|||+|||+|.++.+++..++++++|+++|+++++++.++++++..++.++++++++|+
T Consensus        46 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  125 (225)
T 3tr6_A           46 MQTAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPA  125 (225)
T ss_dssp             GSCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCH
Confidence            56789999999999999999999999999999999999988767899999999999999999999999888899999999


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHH
Q 029764           82 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLN  161 (188)
Q Consensus        82 ~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  161 (188)
                      .+.++.+... ...++||+||+++....+..+++.+.++|+|||+++++|+.+.|.+..+.....      ....+++|+
T Consensus       126 ~~~~~~~~~~-~~~~~fD~v~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~------~~~~~~~~~  198 (225)
T 3tr6_A          126 KDTLAELIHA-GQAWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQSE------NNQLIRLFN  198 (225)
T ss_dssp             HHHHHHHHTT-TCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCH------HHHHHHHHH
T ss_pred             HHHHHHhhhc-cCCCCccEEEECCCHHHHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccCh------HHHHHHHHH
Confidence            8877665321 001689999999988888999999999999999999999999998877654321      466799999


Q ss_pred             HHhhcCCCeEEEEeecCCceEEEEEc
Q 029764          162 RSLADDPRVQLSHVALGDGITICRRI  187 (188)
Q Consensus       162 ~~~~~~~~~~~~~lp~~~G~~~~~~~  187 (188)
                      +.+..+++++.+.+|+++|+.+++|+
T Consensus       199 ~~l~~~~~~~~~~lp~~dG~~~~~k~  224 (225)
T 3tr6_A          199 QKVYKDERVDMILIPIGDGLTLARKK  224 (225)
T ss_dssp             HHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             HHHhcCCCeEEEEEEcCCccEEEEEC
Confidence            99999999999999999999999987

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=100.00  E-value=6.8e-31  Score=198.24  Aligned_cols=177  Identities=42%  Similarity=0.660  Sum_probs=158.1

Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch
Q 029764            2 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   81 (188)
Q Consensus         2 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   81 (188)
                      |...+..++++..++...++++|||+|||+|+++.+++..++++++++++|+++++++.|+++++..++.++++++.+|+
T Consensus        54 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~  133 (232)
T 3cbg_A           54 MQISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPA  133 (232)
T ss_dssp             GSCCHHHHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH
T ss_pred             cCcCHHHHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence            56789999999999998899999999999999999999988767899999999999999999999988877899999999


Q ss_pred             HHHHHHHhhcccCC--CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHHH
Q 029764           82 LSVLDQLLKYSENE--GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILD  159 (188)
Q Consensus        82 ~~~~~~~~~~~~~~--~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  159 (188)
                      .+.++.+...   .  ++||+||+|+....+..+++.+.++|+|||+++++|+.|.|.+..+....     . ....+++
T Consensus       134 ~~~l~~l~~~---~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~~~~~-----~-~~~~~~~  204 (232)
T 3cbg_A          134 LATLEQLTQG---KPLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQE-----A-QTQVLQQ  204 (232)
T ss_dssp             HHHHHHHHTS---SSCCCEEEEEECSCGGGHHHHHHHHHHTEEEEEEEEEECTTGGGGGGCSSCCS-----H-HHHHHHH
T ss_pred             HHHHHHHHhc---CCCCCcCEEEECCCHHHHHHHHHHHHHHcCCCeEEEEeCCCcCCccCCcccCC-----h-HHHHHHH
Confidence            8877765421   2  68999999998888899999999999999999999999999887664321     1 6677999


Q ss_pred             HHHHhhcCCCeEEEEeecCCceEEEEEc
Q 029764          160 LNRSLADDPRVQLSHVALGDGITICRRI  187 (188)
Q Consensus       160 ~~~~~~~~~~~~~~~lp~~~G~~~~~~~  187 (188)
                      |++.+..++++.++++|+++|+++++|+
T Consensus       205 ~~~~l~~~~~~~~~~lp~~dG~~~~~~~  232 (232)
T 3cbg_A          205 FNRDLAQDERVRISVIPLGDGMTLALKK  232 (232)
T ss_dssp             HHHHHTTCTTEEEEEECSBTCEEEEEEC
T ss_pred             HHHHHhhCCCeEEEEEEcCCeEEEEEeC
Confidence            9999999999999999999999999985

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=100.00  E-value=1.3e-30  Score=195.13  Aligned_cols=179  Identities=25%  Similarity=0.428  Sum_probs=159.0

Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch
Q 029764            2 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   81 (188)
Q Consensus         2 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   81 (188)
                      |.+.+..++++..++...++.+|||||||+|+++.++++.++++++++++|+++++++.|++++...++.++++++++|+
T Consensus        40 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  119 (223)
T 3duw_A           40 HDVSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLA  119 (223)
T ss_dssp             CSCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence            55789999999999999999999999999999999999998767899999999999999999999999988899999999


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHH
Q 029764           82 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLN  161 (188)
Q Consensus        82 ~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  161 (188)
                      .+.++.+.+.  ..++||+||+|.....+..+++.+.++|+|||+++++|+.+.|.+..+.....      ....+++|+
T Consensus       120 ~~~~~~~~~~--~~~~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~------~~~~~~~~~  191 (223)
T 3duw_A          120 LDSLQQIENE--KYEPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGDNVVREGEVIDNTSNDP------RVQGIRRFY  191 (223)
T ss_dssp             HHHHHHHHHT--TCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEESCSGGGGGGCTTCCCH------HHHHHHHHH
T ss_pred             HHHHHHHHhc--CCCCcCEEEEcCCcHHHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccch------HHHHHHHHH
Confidence            8877765432  12579999999988888999999999999999999999999998777654321      556799999


Q ss_pred             HHhhcCCCeEEEEeec-----CCceEEEEEcC
Q 029764          162 RSLADDPRVQLSHVAL-----GDGITICRRIF  188 (188)
Q Consensus       162 ~~~~~~~~~~~~~lp~-----~~G~~~~~~~~  188 (188)
                      +.+..++++..+++|+     ++|+.++++++
T Consensus       192 ~~l~~~~~~~~~~~p~~~~~~~dG~~~~~~~~  223 (223)
T 3duw_A          192 ELIAAEPRVSATALQTVGSKGYDGFIMAVVKE  223 (223)
T ss_dssp             HHHHHCTTEEEEEEEEEETTEEEEEEEEEEC-
T ss_pred             HHHhhCCCeEEEEEeccCCCCCCeeEEEEEeC
Confidence            9999999999999999     99999999875

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.98  E-value=6.4e-31  Score=198.35  Aligned_cols=176  Identities=24%  Similarity=0.334  Sum_probs=155.4

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029764            4 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   83 (188)
Q Consensus         4 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   83 (188)
                      ..++.++++..++...++.+|||+|||+|+++.+++...+ +.+|+++|+++++++.|+++++..++.++++++.+|+.+
T Consensus        55 ~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (232)
T 3ntv_A           55 VDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISD-DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALE  133 (232)
T ss_dssp             CCHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCT-TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGG
T ss_pred             cCHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHH
Confidence            4688999999999999999999999999999999999766 789999999999999999999999988889999999988


Q ss_pred             HHH-HHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHHH
Q 029764           84 VLD-QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNR  162 (188)
Q Consensus        84 ~~~-~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (188)
                      .++ .+      .++||+||++.....+..+++.+.++|+|||+++++|++|.|.+..+.....+..+. ....+++|++
T Consensus       134 ~~~~~~------~~~fD~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~d~~~~~g~v~~~~~~~~~~~~~-~~~~~~~~~~  206 (232)
T 3ntv_A          134 QFENVN------DKVYDMIFIDAAKAQSKKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQ-MVKKVQDYNE  206 (232)
T ss_dssp             CHHHHT------TSCEEEEEEETTSSSHHHHHHHHGGGEEEEEEEEEECTTGGGGGGCGGGGGCHHHHH-HHHHHHHHHH
T ss_pred             HHHhhc------cCCccEEEEcCcHHHHHHHHHHHHHhcCCCeEEEEeeCCcCccccCcccccchhhhH-HHHHHHHHHH
Confidence            766 44      478999999998888999999999999999999999999999887764311111222 4567999999


Q ss_pred             HhhcCCCeEEEEeecCCceEEEEEc
Q 029764          163 SLADDPRVQLSHVALGDGITICRRI  187 (188)
Q Consensus       163 ~~~~~~~~~~~~lp~~~G~~~~~~~  187 (188)
                      .+..+++++.+.+|+++|+.+++|+
T Consensus       207 ~l~~~~~~~~~~lp~~dG~~i~~k~  231 (232)
T 3ntv_A          207 WLIKQPGYTTNFLNIDDGLAISIKG  231 (232)
T ss_dssp             HHHTCTTEEEEEECSTTCEEEEEEC
T ss_pred             HHhcCCCeEEEEEEcCCceEEEEEC
Confidence            9999999999999999999999986

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.98  E-value=2.6e-30  Score=196.90  Aligned_cols=177  Identities=29%  Similarity=0.499  Sum_probs=157.6

Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch
Q 029764            2 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   81 (188)
Q Consensus         2 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   81 (188)
                      |...+..++++..++...++.+|||||||+|+++..++..++++++|+++|+++++++.|+++++..++.++++++.+|+
T Consensus        45 ~~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~  124 (248)
T 3tfw_A           45 HDVAANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPA  124 (248)
T ss_dssp             CCCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCH
T ss_pred             cccCHHHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence            45679999999999999999999999999999999999998767899999999999999999999999988899999999


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHH
Q 029764           82 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLN  161 (188)
Q Consensus        82 ~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  161 (188)
                      .+.++.+.    ..++||+||+|+....+..+++.+.++|+|||+++++|+++.|.+..+.....      ....+++|+
T Consensus       125 ~~~l~~~~----~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~~~------~~~~~~~~~  194 (248)
T 3tfw_A          125 LQSLESLG----ECPAFDLIFIDADKPNNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSADE------RVQGVRQFI  194 (248)
T ss_dssp             HHHHHTCC----SCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCCCH------HHHHHHHHH
T ss_pred             HHHHHhcC----CCCCeEEEEECCchHHHHHHHHHHHHhcCCCeEEEEeCCCcCCcccCccccch------HHHHHHHHH
Confidence            88776541    13589999999988888999999999999999999999999998887654321      667799999


Q ss_pred             HHhhcCCCeEEEEe-ecC----CceEEEEEcC
Q 029764          162 RSLADDPRVQLSHV-ALG----DGITICRRIF  188 (188)
Q Consensus       162 ~~~~~~~~~~~~~l-p~~----~G~~~~~~~~  188 (188)
                      +.+..+++|+.+.+ |++    +|+.++++++
T Consensus       195 ~~l~~~~~~~~~~l~~~g~~~~DG~~i~~~~~  226 (248)
T 3tfw_A          195 EMMGAEPRLTATALQTVGTKGWDGFTLAWVNA  226 (248)
T ss_dssp             HHHHHCTTEEEEEEEECSTTCSEEEEEEEECC
T ss_pred             HHHhhCCCEEEEEeecCCCCCCCeeEEEEEeC
Confidence            99999999999988 676    9999999874

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.97  E-value=6.3e-30  Score=192.02  Aligned_cols=179  Identities=39%  Similarity=0.644  Sum_probs=157.4

Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch
Q 029764            2 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   81 (188)
Q Consensus         2 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   81 (188)
                      +...++.++++..++...++++|||+|||+|.++..+++.++++++++++|+++++++.|+++++..++.++++++++|+
T Consensus        51 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~  130 (229)
T 2avd_A           51 SMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPA  130 (229)
T ss_dssp             GSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCH
T ss_pred             CccCHHHHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCH
Confidence            56778999999999999999999999999999999999988757899999999999999999999998878899999999


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHH
Q 029764           82 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLN  161 (188)
Q Consensus        82 ~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  161 (188)
                      .+.++.+.+.+ ..++||+||+|.....+..+++.+.++|+|||+++++|+++.|.+..+....     . ....+++|+
T Consensus       131 ~~~~~~~~~~~-~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~-----~-~~~~~~~~~  203 (229)
T 2avd_A          131 LETLDELLAAG-EAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGD-----V-AAECVRNLN  203 (229)
T ss_dssp             HHHHHHHHHTT-CTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTC-----H-HHHHHHHHH
T ss_pred             HHHHHHHHhcC-CCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEECCCcCCcccCcccCC-----h-HHHHHHHHH
Confidence            88776653210 0168999999988888889999999999999999999999999887654321     1 667799999


Q ss_pred             HHhhcCCCeEEEEeecCCceEEEEEc
Q 029764          162 RSLADDPRVQLSHVALGDGITICRRI  187 (188)
Q Consensus       162 ~~~~~~~~~~~~~lp~~~G~~~~~~~  187 (188)
                      +.+..++++.++.+|+++|+++++|+
T Consensus       204 ~~l~~~~~~~~~~lp~~dGl~~~~k~  229 (229)
T 2avd_A          204 ERIRRDVRVYISLLPLGDGLTLAFKI  229 (229)
T ss_dssp             HHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             HHHhhCCCEEEEEEecCCceEEEEEC
Confidence            99999999999999999999999985

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.96  E-value=4.6e-28  Score=183.32  Aligned_cols=180  Identities=38%  Similarity=0.587  Sum_probs=156.2

Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch
Q 029764            2 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   81 (188)
Q Consensus         2 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   81 (188)
                      |...+..++++..++...++.+|||||||+|+.+..+++.++++++++++|+++++++.|++++...++.++++++.+|+
T Consensus        42 ~~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~  121 (239)
T 2hnk_A           42 MQISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSA  121 (239)
T ss_dssp             CSCCHHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCH
Confidence            56789999999999999999999999999999999999988757899999999999999999999988877899999999


Q ss_pred             HHHHHHHhh--------cccCC--CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCccc
Q 029764           82 LSVLDQLLK--------YSENE--GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRG  151 (188)
Q Consensus        82 ~~~~~~~~~--------~~~~~--~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~  151 (188)
                      .+.++.+..        ++...  ++||+||++.....+..+++.+.++|+|||+++++++.|.|.+..+....     .
T Consensus       122 ~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~-----~  196 (239)
T 2hnk_A          122 LETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQE-----P  196 (239)
T ss_dssp             HHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCC-----H
T ss_pred             HHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEccccCCcccCccccc-----h
Confidence            887665421        00111  68999999988888889999999999999999999999999877654321     1


Q ss_pred             chHHHHHHHHHHhhcCCCeEEEEeecCCceEEEEEc
Q 029764          152 SSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI  187 (188)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~G~~~~~~~  187 (188)
                       ....++.|++.+..++++.+..+|+++|+.+++|+
T Consensus       197 -~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~  231 (239)
T 2hnk_A          197 -STVGIRKFNELVYNDSLVDVSLVPIADGVSLVRKR  231 (239)
T ss_dssp             -HHHHHHHHHHHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             -HHHHHHHHHHHHhhCCCeEEEEEEcCCceEeeeeh
Confidence             66779999999999999999999999999999986

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.96  E-value=1.5e-28  Score=182.46  Aligned_cols=171  Identities=20%  Similarity=0.286  Sum_probs=144.9

Q ss_pred             CCcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchH
Q 029764            3 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   82 (188)
Q Consensus         3 ~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   82 (188)
                      ...+..++++..++...++.+|||+|||+|+++.++++.++++++|+++|+++++++.|+++++..++.++++++.+|+.
T Consensus        39 ~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  118 (210)
T 3c3p_A           39 IVDRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPL  118 (210)
T ss_dssp             CCCHHHHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHH
T ss_pred             CcCHHHHHHHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHH
Confidence            35788899999998888999999999999999999999886578999999999999999999998888778999999998


Q ss_pred             HHHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHHH
Q 029764           83 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNR  162 (188)
Q Consensus        83 ~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (188)
                      +.++.+      .+ ||+||++.....+..+++.+.++|+|||+++++|+.|.|.+.++ . ...     ....+++|.+
T Consensus       119 ~~~~~~------~~-fD~v~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~-~-~~~-----~~~~~~~~~~  184 (210)
T 3c3p_A          119 GIAAGQ------RD-IDILFMDCDVFNGADVLERMNRCLAKNALLIAVNALRRGSVAES-H-EDP-----ETAALREFNH  184 (210)
T ss_dssp             HHHTTC------CS-EEEEEEETTTSCHHHHHHHHGGGEEEEEEEEEESSSSCC-------------------CCCHHHH
T ss_pred             HHhccC------CC-CCEEEEcCChhhhHHHHHHHHHhcCCCeEEEEECccccCcccCc-c-cch-----HHHHHHHHHH
Confidence            766543      35 99999998888889999999999999999999999998876643 1 111     3334889999


Q ss_pred             HhhcCCCeEEEEeecCCceEEEEEc
Q 029764          163 SLADDPRVQLSHVALGDGITICRRI  187 (188)
Q Consensus       163 ~~~~~~~~~~~~lp~~~G~~~~~~~  187 (188)
                      .+..++++....+|+++|+.+++|+
T Consensus       185 ~l~~~~~~~~~~~p~~~G~~~~~~~  209 (210)
T 3c3p_A          185 HLSRRRDFFTTIVPVGNGVLLGYRL  209 (210)
T ss_dssp             HHTTCTTEEEEEECSTTCEEEEEEC
T ss_pred             HHhhCCCeEEEEEecCCceEEEEeC
Confidence            9999999999999999999999986

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.96  E-value=1.9e-27  Score=177.88  Aligned_cols=164  Identities=22%  Similarity=0.375  Sum_probs=140.7

Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch
Q 029764            2 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   81 (188)
Q Consensus         2 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   81 (188)
                      |...++.++++..++...++.+|||+|||+|.++.++++.++++++|+++|+++++++.|+++++..++.++++++++|+
T Consensus        40 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  119 (221)
T 3u81_A           40 MNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGAS  119 (221)
T ss_dssp             GGCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCH
Confidence            56789999999999999999999999999999999999987668899999999999999999999999888899999999


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCccchHH---HHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHH
Q 029764           82 LSVLDQLLKYSENEGSFDYAFVDADKDNYCN---YHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAIL  158 (188)
Q Consensus        82 ~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~---~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  158 (188)
                      .+.++.+... ...++||+||+|+....+..   +++.+ ++|+|||+++++|+.+++                    .+
T Consensus       120 ~~~l~~~~~~-~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~~~--------------------~~  177 (221)
T 3u81_A          120 QDLIPQLKKK-YDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIVPG--------------------TP  177 (221)
T ss_dssp             HHHGGGTTTT-SCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCCCC--------------------CH
T ss_pred             HHHHHHHHHh-cCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCCcc--------------------hH
Confidence            8876654210 01168999999987766654   44555 999999999999988744                    46


Q ss_pred             HHHHHhhcCCCeEEEEee-------cCCceEEEEEc
Q 029764          159 DLNRSLADDPRVQLSHVA-------LGDGITICRRI  187 (188)
Q Consensus       159 ~~~~~~~~~~~~~~~~lp-------~~~G~~~~~~~  187 (188)
                      .|.+++.++++|.+..+|       +++|+.+++++
T Consensus       178 ~~~~~l~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~  213 (221)
T 3u81_A          178 DFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQ  213 (221)
T ss_dssp             HHHHHHHHCTTEEEEEEEEEETTTTEEEEEEEEEEC
T ss_pred             HHHHHHhhCCCceEEEcccccccCCCCCceEEEEEe
Confidence            788889999999999998       79999999875

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.95  E-value=1.1e-26  Score=174.88  Aligned_cols=179  Identities=25%  Similarity=0.387  Sum_probs=138.3

Q ss_pred             CCcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchH
Q 029764            3 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   82 (188)
Q Consensus         3 ~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   82 (188)
                      ...+..++++..++...++.+|||+|||+|..+..+++.++ +.+++++|+++++++.|++++...++.++++++.+|+.
T Consensus        37 ~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  115 (233)
T 2gpy_A           37 IMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDAL  115 (233)
T ss_dssp             CCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCT-TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGG
T ss_pred             CcCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHH
Confidence            35688899999999988999999999999999999999987 78999999999999999999999998778999999998


Q ss_pred             HHHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHHH
Q 029764           83 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNR  162 (188)
Q Consensus        83 ~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (188)
                      +.++...    ..++||+|+++.....+..+++.+.++|+|||.++++|+++.|.+..++. ..+..+. ....+++|+.
T Consensus       116 ~~~~~~~----~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~-~~~~~~~-~~~~~~~~~~  189 (233)
T 2gpy_A          116 QLGEKLE----LYPLFDVLFIDAAKGQYRRFFDMYSPMVRPGGLILSDNVLFRGLVAETDI-EHKRHKQ-LATKIDTYNQ  189 (233)
T ss_dssp             GSHHHHT----TSCCEEEEEEEGGGSCHHHHHHHHGGGEEEEEEEEEETTTC---------------------------C
T ss_pred             HHHHhcc----cCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEEcCCcCCccCCccc-cccchhH-HHHHHHHHHH
Confidence            7655431    13689999999877788899999999999999999999999886654321 1111111 3455788888


Q ss_pred             HhhcCCCeEEEEeecCCceEEEEEcC
Q 029764          163 SLADDPRVQLSHVALGDGITICRRIF  188 (188)
Q Consensus       163 ~~~~~~~~~~~~lp~~~G~~~~~~~~  188 (188)
                      .+..++.+.+.++|+++|+.+++|++
T Consensus       190 ~l~~~~~~~~~~~p~~dG~~~~~~~~  215 (233)
T 2gpy_A          190 WLLEHPQYDTRIFPVGDGIAISIKRE  215 (233)
T ss_dssp             TTTTCTTEEEEEECSTTCEEEEEEC-
T ss_pred             HHHhCCCeEEEEEEcCCeEEEEEEcC
Confidence            99999999999999999999999763

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=99.84  E-value=4.4e-20  Score=135.35  Aligned_cols=149  Identities=13%  Similarity=0.087  Sum_probs=113.3

Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCC--CCcEEEEEc
Q 029764            2 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV--DHKINFIES   79 (188)
Q Consensus         2 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--~~~~~~~~~   79 (188)
                      +..+++++++|..  ...++++||||||  |+||+++|+. + +++|+++|.+++..+.|++++++.|+  .++++++.+
T Consensus        14 ~~v~~~~~~~L~~--~l~~a~~VLEiGt--GySTl~lA~~-~-~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~g   87 (202)
T 3cvo_A           14 LTMPPAEAEALRM--AYEEAEVILEYGS--GGSTVVAAEL-P-GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWT   87 (202)
T ss_dssp             CCSCHHHHHHHHH--HHHHCSEEEEESC--SHHHHHHHTS-T-TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEEC
T ss_pred             ccCCHHHHHHHHH--HhhCCCEEEEECc--hHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEe
Confidence            4567899999988  5567899999998  6899999984 4 78999999999999999999999998  789999999


Q ss_pred             chHHH--------------HHHHh----hcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccccCccccCC
Q 029764           80 EALSV--------------LDQLL----KYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVP  141 (188)
Q Consensus        80 d~~~~--------------~~~~~----~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~  141 (188)
                      |+.+.              ++.+.    +. ...++||+||+|+.+.  ...+..+.++|++||+|+++|+.++....  
T Consensus        88 da~~~~~wg~p~~~~~~~~l~~~~~~i~~~-~~~~~fDlIfIDg~k~--~~~~~~~l~~l~~GG~Iv~DNv~~r~~y~--  162 (202)
T 3cvo_A           88 DIGPTGDWGHPVSDAKWRSYPDYPLAVWRT-EGFRHPDVVLVDGRFR--VGCALATAFSITRPVTLLFDDYSQRRWQH--  162 (202)
T ss_dssp             CCSSBCGGGCBSSSTTGGGTTHHHHGGGGC-TTCCCCSEEEECSSSH--HHHHHHHHHHCSSCEEEEETTGGGCSSGG--
T ss_pred             CchhhhcccccccchhhhhHHHHhhhhhcc-ccCCCCCEEEEeCCCc--hhHHHHHHHhcCCCeEEEEeCCcCCcchH--
Confidence            96432              22211    11 0136899999999765  36677788999999999999977543211  


Q ss_pred             CCCCCCCcccchHHHHHHHHHHhhcCCCeEEEEe
Q 029764          142 EEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHV  175 (188)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  175 (188)
                                    .+.+|.+.+...++.-...+
T Consensus       163 --------------~v~~~~~~~~~~~~~a~f~~  182 (202)
T 3cvo_A          163 --------------QVEEFLGAPLMIGRLAAFQV  182 (202)
T ss_dssp             --------------GGHHHHCCCEEETTEEEEEE
T ss_pred             --------------HHHHHHhHHhhcCceEEEEe
Confidence                          15667666666666544433

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=99.82  E-value=1.5e-19  Score=139.13  Aligned_cols=158  Identities=12%  Similarity=0.094  Sum_probs=125.0

Q ss_pred             cHHHHHHHHHHHHH----cCCCEEEEEcccchHHHHHHHhhCC----CCCEEEEEeCCc---------------------
Q 029764            5 APDAGQLMAMLLRL----VNAKKTIEIGVFTGYSLLLTALTIP----EDGQITAIDVNR---------------------   55 (188)
Q Consensus         5 ~~~~~~~l~~l~~~----~~~~~vLeiG~g~G~~~~~la~~~~----~~~~v~~iD~~~---------------------   55 (188)
                      .++....|+.++..    ..+..|||+|++.|+++++++..++    ++.+|+++|..+                     
T Consensus        87 ~~~r~~~L~~l~~~v~~~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~  166 (282)
T 2wk1_A           87 GIKRLENIRQCVEDVIGNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRR  166 (282)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGG
T ss_pred             CHHHHHHHHHHHHHHHhcCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccc
Confidence            35566667666654    5588999999999999999988763    268999999642                     


Q ss_pred             -----hhHHHHHHHHHhcCCC-CcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCc-cchHHHHHHHHhccCcCeEEE
Q 029764           56 -----ETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-DNYCNYHERLMKLLKVGGIAV  128 (188)
Q Consensus        56 -----~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~-~~~~~~~~~~~~~L~~gG~lv  128 (188)
                           ..++.+++++++.|+. ++++++.|++.+.++++.     .++||+||+|++. ..+..+++.+.++|+|||+|+
T Consensus       167 ~~~~~~~~~~ar~n~~~~gl~~~~I~li~Gda~etL~~~~-----~~~~d~vfIDaD~y~~~~~~Le~~~p~L~pGGiIv  241 (282)
T 2wk1_A          167 NSVLAVSEEEVRRNFRNYDLLDEQVRFLPGWFKDTLPTAP-----IDTLAVLRMDGDLYESTWDTLTNLYPKVSVGGYVI  241 (282)
T ss_dssp             HHHHCCCHHHHHHHHHHTTCCSTTEEEEESCHHHHSTTCC-----CCCEEEEEECCCSHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             cccchhHHHHHHHHHHHcCCCcCceEEEEeCHHHHHhhCC-----CCCEEEEEEcCCccccHHHHHHHHHhhcCCCEEEE
Confidence                 1467789999999984 899999999999887642     4689999999986 456788999999999999999


Q ss_pred             Eecccc-CccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeEEEEeecCCceEEEEEc
Q 029764          129 YDNTLW-GGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI  187 (188)
Q Consensus       129 ~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~G~~~~~~~  187 (188)
                      +||+.+ +|                ...++++|.+.    .++...+++++.+..+.+|.
T Consensus       242 ~DD~~~~~G----------------~~~Av~Ef~~~----~~i~~~i~~~~~~~v~~rk~  281 (282)
T 2wk1_A          242 VDDYMMCPP----------------CKDAVDEYRAK----FDIADELITIDRDGVYWQRT  281 (282)
T ss_dssp             ESSCTTCHH----------------HHHHHHHHHHH----TTCCSCCEECSSSCEEEECC
T ss_pred             EcCCCCCHH----------------HHHHHHHHHHh----cCCceEEEEecCEEEEEEeC
Confidence            999854 22                55667777555    46777788999888887763

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.76  E-value=2.3e-18  Score=129.94  Aligned_cols=116  Identities=21%  Similarity=0.309  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhh---CCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchH
Q 029764            6 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALT---IPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   82 (188)
Q Consensus         6 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~---~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   82 (188)
                      +++..++..++...++.+|||||||+|+++..+++.   +.++++|+++|+++++++.|+      ++.++++++++|+.
T Consensus        67 p~~~~~l~~~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~~~~v~~~~gD~~  140 (236)
T 2bm8_A           67 PDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMENITLHQGDCS  140 (236)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTTEEEEECCSS
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------ccCCceEEEECcch
Confidence            788888888888888899999999999999999987   334789999999999998887      12357999999987


Q ss_pred             HH--HHHHhhcccCCCceeEEEEeCCccchHHHHHHHHh-ccCcCeEEEEecc
Q 029764           83 SV--LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK-LLKVGGIAVYDNT  132 (188)
Q Consensus        83 ~~--~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~-~L~~gG~lv~~~~  132 (188)
                      +.  ++.+     ...+||+|++++.+..+..++.++.+ +|+|||++++.+.
T Consensus       141 ~~~~l~~~-----~~~~fD~I~~d~~~~~~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          141 DLTTFEHL-----REMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             CSGGGGGG-----SSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             hHHHHHhh-----ccCCCCEEEECCchHhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence            63  2322     12479999999877788889999996 9999999999875

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.76  E-value=7.3e-18  Score=124.08  Aligned_cols=121  Identities=19%  Similarity=0.193  Sum_probs=100.3

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029764            4 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   83 (188)
Q Consensus         4 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   83 (188)
                      +..+....+...+...++.+|||+|||+|..+..+++..+ ..+++++|+++++++.++++++..++ ++++++.+|+.+
T Consensus        24 ~~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~  101 (204)
T 3e05_A           24 TKQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMP-NGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPE  101 (204)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCT-TSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTT
T ss_pred             ChHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhh
Confidence            3445544444445666778999999999999999999875 78999999999999999999998887 579999999865


Q ss_pred             HHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           84 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        84 ~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      .++.       .++||+|+++........+++.+.++|+|||.+++....
T Consensus       102 ~~~~-------~~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  144 (204)
T 3e05_A          102 GLDD-------LPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAVT  144 (204)
T ss_dssp             TCTT-------SCCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEECB
T ss_pred             hhhc-------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEecc
Confidence            4332       368999999976667889999999999999999997544

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.76  E-value=6.4e-18  Score=132.40  Aligned_cols=150  Identities=18%  Similarity=0.235  Sum_probs=109.6

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc--CC-CCcEEEEEcchHHHHHHHhhcccC
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GV-DHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~-~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      ..++++|||||||+|..+..+++..+ ..+++++|+++++++.|++++...  ++ .++++++.+|+.+.++..      
T Consensus       106 ~~~~~~VLdIG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~------  178 (314)
T 2b2c_A          106 HPDPKRVLIIGGGDGGILREVLKHES-VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNH------  178 (314)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHC------
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhc------
Confidence            35678999999999999999998754 789999999999999999998654  33 468999999998876542      


Q ss_pred             CCceeEEEEeCCcc-----c-h-HHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHHHHhhcC
Q 029764           95 EGSFDYAFVDADKD-----N-Y-CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADD  167 (188)
Q Consensus        95 ~~~~D~i~id~~~~-----~-~-~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (188)
                      .++||+|++|....     . + .++++.+.++|+|||+++++.....    . .       .. ....+.++++.+..+
T Consensus       179 ~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~----~-~-------~~-~~~~~~~~l~~vF~~  245 (314)
T 2b2c_A          179 KNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVW----L-H-------LP-LIAHLVAFNRKIFPA  245 (314)
T ss_dssp             TTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEECCCTT----T-C-------HH-HHHHHHHHHHHHCSE
T ss_pred             CCCceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCCcc----c-C-------HH-HHHHHHHHHHHHCCc
Confidence            47899999986321     1 1 6789999999999999999752210    0 0       00 334456666666555


Q ss_pred             CCeEEEEeec---CC-ceEEEEEc
Q 029764          168 PRVQLSHVAL---GD-GITICRRI  187 (188)
Q Consensus       168 ~~~~~~~lp~---~~-G~~~~~~~  187 (188)
                      ..+....+|.   |+ |+.++.++
T Consensus       246 v~~~~~~iP~~~~g~~g~~~ask~  269 (314)
T 2b2c_A          246 VTYAQSIVSTYPSGSMGYLICAKN  269 (314)
T ss_dssp             EEEEEEECTTSGGGEEEEEEEESS
T ss_pred             ceEEEEEecCcCCCceEEEEEeCC
Confidence            5666777776   34 78888754

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.76  E-value=8e-17  Score=117.18  Aligned_cols=116  Identities=10%  Similarity=0.099  Sum_probs=93.2

Q ss_pred             HHHHHHHHH--cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029764           10 QLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   87 (188)
Q Consensus        10 ~~l~~l~~~--~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   87 (188)
                      .++..+...  .++.+|||+|||+|..+..++.. + ..+|+++|+++++++.|+++++..++ ++++++++|+.+....
T Consensus        32 ~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~  108 (189)
T 3p9n_A           32 SLFNIVTARRDLTGLAVLDLYAGSGALGLEALSR-G-AASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAAVVAA  108 (189)
T ss_dssp             HHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHHHHHH
T ss_pred             HHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHC-C-CCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHHHHhh
Confidence            344444333  57789999999999999987774 2 56899999999999999999999887 5799999999887654


Q ss_pred             HhhcccCCCceeEEEEeCCc----cchHHHHHHHHh--ccCcCeEEEEeccc
Q 029764           88 LLKYSENEGSFDYAFVDADK----DNYCNYHERLMK--LLKVGGIAVYDNTL  133 (188)
Q Consensus        88 ~~~~~~~~~~~D~i~id~~~----~~~~~~~~~~~~--~L~~gG~lv~~~~~  133 (188)
                      +     ..++||+|+++...    ......++.+.+  +|+|||.+++....
T Consensus       109 ~-----~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~  155 (189)
T 3p9n_A          109 G-----TTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERAT  155 (189)
T ss_dssp             C-----CSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred             c-----cCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence            3     14789999998643    346678888888  99999999997544

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.76  E-value=1.1e-17  Score=129.17  Aligned_cols=106  Identities=16%  Similarity=0.219  Sum_probs=91.3

Q ss_pred             HHHHcCCCEEEEEcccchHHH-HHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029764           15 LLRLVNAKKTIEIGVFTGYSL-LLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   93 (188)
Q Consensus        15 l~~~~~~~~vLeiG~g~G~~~-~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   93 (188)
                      ++...++.+|||||||+|..+ +.+|+ .+ +++|+++|+++++++.|++++++.++ ++++++++|+.+. +       
T Consensus       117 la~l~~g~rVLDIGcG~G~~ta~~lA~-~~-ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l-~-------  185 (298)
T 3fpf_A          117 LGRFRRGERAVFIGGGPLPLTGILLSH-VY-GMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVI-D-------  185 (298)
T ss_dssp             HTTCCTTCEEEEECCCSSCHHHHHHHH-TT-CCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGG-G-------
T ss_pred             HcCCCCcCEEEEECCCccHHHHHHHHH-cc-CCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhC-C-------
Confidence            566788999999999998655 44554 44 78999999999999999999999998 7899999999763 2       


Q ss_pred             CCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764           94 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        94 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                       .++||+||+++...+...+++++.+.|||||.+++.+.
T Consensus       186 -d~~FDvV~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          186 -GLEFDVLMVAALAEPKRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             -GCCCSEEEECTTCSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             -CCCcCEEEECCCccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence             37899999988777888999999999999999999764

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.75  E-value=2.4e-17  Score=121.71  Aligned_cols=117  Identities=16%  Similarity=0.133  Sum_probs=96.3

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029764            5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   84 (188)
Q Consensus         5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   84 (188)
                      .++....+...+...++.+|||+|||+|..+..+++.   +.+|+++|+++++++.|+++++..++.++++++.+|+.+.
T Consensus        40 ~~~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~  116 (204)
T 3njr_A           40 KSPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAA  116 (204)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGG
T ss_pred             cHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhh
Confidence            4455555555556677789999999999999999986   6799999999999999999999999876899999999774


Q ss_pred             HHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           85 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        85 ~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      ++.       .++||+|+++... ... +++.+.+.|+|||.+++....
T Consensus       117 ~~~-------~~~~D~v~~~~~~-~~~-~l~~~~~~LkpgG~lv~~~~~  156 (204)
T 3njr_A          117 LAD-------LPLPEAVFIGGGG-SQA-LYDRLWEWLAPGTRIVANAVT  156 (204)
T ss_dssp             GTT-------SCCCSEEEECSCC-CHH-HHHHHHHHSCTTCEEEEEECS
T ss_pred             ccc-------CCCCCEEEECCcc-cHH-HHHHHHHhcCCCcEEEEEecC
Confidence            332       3689999998743 444 899999999999999997544

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.75  E-value=1.9e-17  Score=126.68  Aligned_cols=116  Identities=16%  Similarity=0.195  Sum_probs=93.3

Q ss_pred             HHHHHHHH--HcCCCEEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764           10 QLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   86 (188)
Q Consensus        10 ~~l~~l~~--~~~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   86 (188)
                      +++..++.  ..++.+|||+|||+|..+..+++.++ ++.+|+++|+++++++.|+++++..+...+++++++|+.+.  
T Consensus        58 ~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~--  135 (261)
T 4gek_A           58 SMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI--  135 (261)
T ss_dssp             HHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTC--
T ss_pred             HHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccc--
Confidence            33444443  45677999999999999999998764 36799999999999999999999888888899999998653  


Q ss_pred             HHhhcccCCCceeEEEEeCCc-----cchHHHHHHHHhccCcCeEEEEecccc
Q 029764           87 QLLKYSENEGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        87 ~~~~~~~~~~~~D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                             ..++||+|++....     .....+++++.+.|||||.+++.+...
T Consensus       136 -------~~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~  181 (261)
T 4gek_A          136 -------AIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS  181 (261)
T ss_dssp             -------CCCSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred             -------cccccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccC
Confidence                   14679999886422     234568999999999999999976553

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.75  E-value=1.1e-17  Score=130.53  Aligned_cols=147  Identities=14%  Similarity=0.205  Sum_probs=112.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHh--cCC-CCcEEEEEcchHHHHHHHhhcccCC
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK--AGV-DHKINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~--~~~-~~~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      .++++|||||||+|..+..+++..+ ..+++++|+++++++.|++++..  .++ .++++++.+|+.+.++..      .
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~------~  166 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN------Q  166 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC------S
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhC------C
Confidence            4678999999999999999998754 68999999999999999999765  233 468999999998876542      4


Q ss_pred             CceeEEEEeCCcc-------chHHHHHHHHhccCcCeEEEEeccc-cCccccCCCCCCCCCcccchHHHHHHHHHHhhcC
Q 029764           96 GSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYDNTL-WGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADD  167 (188)
Q Consensus        96 ~~~D~i~id~~~~-------~~~~~~~~~~~~L~~gG~lv~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (188)
                      ++||+|++|....       ...++++.+.++|+|||+++++... |..             .. ....+.++++.+..+
T Consensus       167 ~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~-------------~~-~~~~~~~~l~~~f~~  232 (304)
T 2o07_A          167 DAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLH-------------LD-LIKEMRQFCQSLFPV  232 (304)
T ss_dssp             SCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTC-------------HH-HHHHHHHHHHHHCSE
T ss_pred             CCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCCcccc-------------hH-HHHHHHHHHHHhCCC
Confidence            7899999996432       1346899999999999999997633 211             00 445577777777666


Q ss_pred             CCeEEEEeecC----CceEEEEE
Q 029764          168 PRVQLSHVALG----DGITICRR  186 (188)
Q Consensus       168 ~~~~~~~lp~~----~G~~~~~~  186 (188)
                      .++....+|.-    .|+.++.+
T Consensus       233 v~~~~~~vP~~~~g~~g~~~as~  255 (304)
T 2o07_A          233 VAYAYCTIPTYPSGQIGFMLCSK  255 (304)
T ss_dssp             EEEEEEECTTSGGGEEEEEEEES
T ss_pred             ceeEEEEeccccCcceEEEEEeC
Confidence            67777777762    47888775

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.74  E-value=1.6e-17  Score=119.27  Aligned_cols=117  Identities=19%  Similarity=0.167  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029764            8 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   87 (188)
Q Consensus         8 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   87 (188)
                      ..+.+...+...++.+|||+|||+|..+..++...+ +.+++++|+++++++.+++++...++..++ ++.+|..+.++.
T Consensus        13 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~   90 (178)
T 3hm2_A           13 VRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTP-QTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDD   90 (178)
T ss_dssp             HHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSS-SEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGG
T ss_pred             HHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCC-CCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhc
Confidence            333343344555677999999999999999999876 789999999999999999999998887678 888888654332


Q ss_pred             HhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           88 LLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        88 ~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      .      .++||+|++...... ..+++.+.+.|+|||.+++....
T Consensus        91 ~------~~~~D~i~~~~~~~~-~~~l~~~~~~L~~gG~l~~~~~~  129 (178)
T 3hm2_A           91 V------PDNPDVIFIGGGLTA-PGVFAAAWKRLPVGGRLVANAVT  129 (178)
T ss_dssp             C------CSCCSEEEECC-TTC-TTHHHHHHHTCCTTCEEEEEECS
T ss_pred             c------CCCCCEEEECCcccH-HHHHHHHHHhcCCCCEEEEEeec
Confidence            1      278999999865444 67899999999999999987644

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.74  E-value=3e-17  Score=118.06  Aligned_cols=108  Identities=19%  Similarity=0.223  Sum_probs=89.8

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..++.+|||+|||+|..+..+++. + ..+++++|+++++++.+++++...++.++++++.+|+.+.++..      .++
T Consensus        29 ~~~~~~vLDlGcG~G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~------~~~  100 (177)
T 2esr_A           29 YFNGGRVLDLFAGSGGLAIEAVSR-G-MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL------TGR  100 (177)
T ss_dssp             CCCSCEEEEETCTTCHHHHHHHHT-T-CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB------CSC
T ss_pred             hcCCCeEEEeCCCCCHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhh------cCC
Confidence            446789999999999999999886 3 57999999999999999999999888778999999998865543      467


Q ss_pred             eeEEEEeCCc--cchHHHHHHHH--hccCcCeEEEEeccc
Q 029764           98 FDYAFVDADK--DNYCNYHERLM--KLLKVGGIAVYDNTL  133 (188)
Q Consensus        98 ~D~i~id~~~--~~~~~~~~~~~--~~L~~gG~lv~~~~~  133 (188)
                      ||+|+++...  ......++.+.  ++|+|||.+++....
T Consensus       101 fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~  140 (177)
T 2esr_A          101 FDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDK  140 (177)
T ss_dssp             EEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             CCEEEECCCCCcchHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence            9999998653  34556677776  899999999987544

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.73  E-value=9.6e-17  Score=119.08  Aligned_cols=167  Identities=16%  Similarity=0.163  Sum_probs=114.7

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCC----cEEEEEcch
Q 029764            6 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH----KINFIESEA   81 (188)
Q Consensus         6 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~----~~~~~~~d~   81 (188)
                      ++..+.+...+...++.+|||+|||+|..+..+++..+ ..+++++|+++++++.+++++...++..    +++++++|+
T Consensus        15 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~   93 (217)
T 3jwh_A           15 QQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSF-FEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGAL   93 (217)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTT-CSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCT
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCC-CCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCc
Confidence            45556666666777888999999999999999998755 5799999999999999999998777654    799999997


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCc-----cchHHHHHHHHhccCcCeEEEEeccccCccccC--CCC--CCCCCcccc
Q 029764           82 LSVLDQLLKYSENEGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAV--PEE--QVPDHFRGS  152 (188)
Q Consensus        82 ~~~~~~~~~~~~~~~~~D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~--~~~--~~~~~~~~~  152 (188)
                      ... +.      ..++||+|++....     .....+++.+.++|+|||++++......+....  +..  ....+....
T Consensus        94 ~~~-~~------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (217)
T 3jwh_A           94 TYQ-DK------RFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFEW  166 (217)
T ss_dssp             TSC-CG------GGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCSCB
T ss_pred             ccc-cc------cCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhccccccccccccccccc
Confidence            432 11      13689999987532     234678999999999999888754332111110  000  001111110


Q ss_pred             hHHHHHHHHHHhhcCCCeEEEEeecCCc
Q 029764          153 SRQAILDLNRSLADDPRVQLSHVALGDG  180 (188)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~lp~~~G  180 (188)
                      ....++++.+.+....+|.....++++.
T Consensus       167 ~~~~l~~~~~~~~~~~Gf~v~~~~~g~~  194 (217)
T 3jwh_A          167 TRSQFQNWANKITERFAYNVQFQPIGEA  194 (217)
T ss_dssp             CHHHHHHHHHHHHHHSSEEEEECCCSCC
T ss_pred             CHHHHHHHHHHHHHHcCceEEEEecCCc
Confidence            2344566666666677899888876653

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.73  E-value=1.1e-16  Score=118.89  Aligned_cols=168  Identities=20%  Similarity=0.149  Sum_probs=113.0

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCC----cEEEEEcc
Q 029764            5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH----KINFIESE   80 (188)
Q Consensus         5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~----~~~~~~~d   80 (188)
                      .+...+.+..++...++.+|||+|||+|..+..++...+ ..+++++|+++.+++.+++++...++.+    +++++++|
T Consensus        14 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d   92 (219)
T 3jwg_A           14 NQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKS-FEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSS   92 (219)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTT-CCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECC
T ss_pred             hHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCc
Confidence            344555666666667889999999999999999998765 5799999999999999999988777654    79999999


Q ss_pred             hHHHHHHHhhcccCCCceeEEEEeCCc---c--chHHHHHHHHhccCcCeEEEEeccccCccccC--CCCC--CCCCccc
Q 029764           81 ALSVLDQLLKYSENEGSFDYAFVDADK---D--NYCNYHERLMKLLKVGGIAVYDNTLWGGTVAV--PEEQ--VPDHFRG  151 (188)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~D~i~id~~~---~--~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~--~~~~--~~~~~~~  151 (188)
                      .... +.      ..++||+|++....   .  ....+++.+.++|+|||++++......+....  +...  ...+...
T Consensus        93 ~~~~-~~------~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (219)
T 3jwg_A           93 LVYR-DK------RFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFE  165 (219)
T ss_dssp             SSSC-CG------GGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTS
T ss_pred             cccc-cc------ccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceee
Confidence            7432 11      13689999987432   2  23578999999999999877754332211110  0000  0011110


Q ss_pred             chHHHHHHHHHHhhcCCCeEEEEeecCCc
Q 029764          152 SSRQAILDLNRSLADDPRVQLSHVALGDG  180 (188)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~G  180 (188)
                      .....++.+.+.+....+|+....+++++
T Consensus       166 ~~~~~l~~~~~~l~~~~Gf~v~~~~~g~~  194 (219)
T 3jwg_A          166 WTRKEFQTWAVKVAEKYGYSVRFLQIGEI  194 (219)
T ss_dssp             BCHHHHHHHHHHHHHHHTEEEEEEEESCC
T ss_pred             ecHHHHHHHHHHHHHHCCcEEEEEecCCc
Confidence            02334555555555566888888866643

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.72  E-value=1.4e-16  Score=115.27  Aligned_cols=110  Identities=15%  Similarity=0.154  Sum_probs=89.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++.+|||+|||+|..+..++.. + ..+++++|+++++++.|++++...++.++++++++|+.+..+.+..   ..++|
T Consensus        43 ~~~~~vLD~GcG~G~~~~~~~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~~~~f  117 (187)
T 2fhp_A           43 FDGGMALDLYSGSGGLAIEAVSR-G-MDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE---EKLQF  117 (187)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH---TTCCE
T ss_pred             cCCCCEEEeCCccCHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHh---cCCCC
Confidence            46779999999999999988874 2 5799999999999999999999988777899999999886654321   14789


Q ss_pred             eEEEEeCC--ccchHHHHHHH--HhccCcCeEEEEeccc
Q 029764           99 DYAFVDAD--KDNYCNYHERL--MKLLKVGGIAVYDNTL  133 (188)
Q Consensus        99 D~i~id~~--~~~~~~~~~~~--~~~L~~gG~lv~~~~~  133 (188)
                      |+|+++..  .......++.+  .++|+|||.+++....
T Consensus       118 D~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~  156 (187)
T 2fhp_A          118 DLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDK  156 (187)
T ss_dssp             EEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             CEEEECCCCCchhHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence            99999865  23456667777  7899999999986544

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.72  E-value=1.5e-16  Score=124.69  Aligned_cols=150  Identities=13%  Similarity=0.126  Sum_probs=106.4

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc--C-C-CCcEEEEEcchHHHHHHHhhccc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--G-V-DHKINFIESEALSVLDQLLKYSE   93 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~-~-~~~~~~~~~d~~~~~~~~~~~~~   93 (188)
                      ..++++|||||||+|..+..+++..+ ..+++++|+++++++.|++++...  + + .++++++.+|+.+.++..     
T Consensus        75 ~~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~-----  148 (314)
T 1uir_A           75 HPEPKRVLIVGGGEGATLREVLKHPT-VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT-----  148 (314)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC-----
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhc-----
Confidence            45778999999999999999998654 679999999999999999987652  2 2 367999999998876542     


Q ss_pred             CCCceeEEEEeCCccc----------hHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHHHH
Q 029764           94 NEGSFDYAFVDADKDN----------YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRS  163 (188)
Q Consensus        94 ~~~~~D~i~id~~~~~----------~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (188)
                       .++||+|++|.....          ..++++.+.++|+|||++++......    .....        ....+.+.++.
T Consensus       149 -~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~----~~~~~--------~~~~~~~~l~~  215 (314)
T 1uir_A          149 -EERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMIL----LTHHR--------VHPVVHRTVRE  215 (314)
T ss_dssp             -CCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEEC----C---C--------HHHHHHHHHHT
T ss_pred             -CCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCcc----ccCHH--------HHHHHHHHHHH
Confidence             478999999964332          47889999999999999998632210    00000        23334444444


Q ss_pred             hhcCCCeEEEEeecCCc---eEEEEE
Q 029764          164 LADDPRVQLSHVALGDG---ITICRR  186 (188)
Q Consensus       164 ~~~~~~~~~~~lp~~~G---~~~~~~  186 (188)
                      +..+..+....+|..+|   +.++.|
T Consensus       216 ~F~~v~~~~~~vP~~~g~~~~~~as~  241 (314)
T 1uir_A          216 AFRYVRSYKNHIPGFFLNFGFLLASD  241 (314)
T ss_dssp             TCSEEEEEEEEEGGGTEEEEEEEEES
T ss_pred             HCCceEEEEEecCCCCCeEEEEEEEC
Confidence            33333445566787655   566664

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.72  E-value=3.5e-17  Score=123.39  Aligned_cols=117  Identities=19%  Similarity=0.187  Sum_probs=92.1

Q ss_pred             HHHHHHHH--cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029764           11 LMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   88 (188)
Q Consensus        11 ~l~~l~~~--~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   88 (188)
                      ++..++..  .++.+|||||||+|.++.++++..+  .++++||++|++++.|+++....+  .++.++.+|+.+....+
T Consensus        49 ~m~~~a~~~~~~G~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~--~~~~~~~~~a~~~~~~~  124 (236)
T 3orh_A           49 YMHALAAAASSKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTL  124 (236)
T ss_dssp             HHHHHHHHHTTTCEEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGS
T ss_pred             HHHHHHHhhccCCCeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCC--CceEEEeehHHhhcccc
Confidence            44444433  4567999999999999999988643  589999999999999999987765  46889999998776554


Q ss_pred             hhcccCCCceeEEEEeCC--------ccchHHHHHHHHhccCcCeEEEEeccccCc
Q 029764           89 LKYSENEGSFDYAFVDAD--------KDNYCNYHERLMKLLKVGGIAVYDNTLWGG  136 (188)
Q Consensus        89 ~~~~~~~~~~D~i~id~~--------~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  136 (188)
                           ..++||.|+.|..        ..+...+++++.++|||||++++.+....+
T Consensus       125 -----~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~~~~~~  175 (236)
T 3orh_A          125 -----PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWG  175 (236)
T ss_dssp             -----CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHH
T ss_pred             -----cccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEecCCch
Confidence                 2578999998842        223567889999999999999998765544

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.71  E-value=2.9e-16  Score=121.27  Aligned_cols=148  Identities=12%  Similarity=0.082  Sum_probs=105.5

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc--CC--------CCcEEEEEcchHHHHH
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GV--------DHKINFIESEALSVLD   86 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~--------~~~~~~~~~d~~~~~~   86 (188)
                      ...++++|||||||+|..+..+++. + ..+++++|+++++++.|++++ ..  ++        .++++++.+|+.+.++
T Consensus        72 ~~~~~~~VLdiG~G~G~~~~~l~~~-~-~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~  148 (281)
T 1mjf_A           72 AHPKPKRVLVIGGGDGGTVREVLQH-D-VDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIK  148 (281)
T ss_dssp             HSSCCCEEEEEECTTSHHHHHHTTS-C-CSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHH
T ss_pred             hCCCCCeEEEEcCCcCHHHHHHHhC-C-CCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhc
Confidence            3456789999999999999999987 5 789999999999999999988 43  32        4679999999987765


Q ss_pred             HHhhcccCCCceeEEEEeCCc-----cc--hHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHHH
Q 029764           87 QLLKYSENEGSFDYAFVDADK-----DN--YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILD  159 (188)
Q Consensus        87 ~~~~~~~~~~~~D~i~id~~~-----~~--~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  159 (188)
                      .       .++||+|++|...     ..  ..++++.+.++|+|||+++++......     ..   +     ....+.+
T Consensus       149 ~-------~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~-----~~---~-----~~~~~~~  208 (281)
T 1mjf_A          149 N-------NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYL-----FT---D-----ELISAYK  208 (281)
T ss_dssp             H-------CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTT-----SH---H-----HHHHHHH
T ss_pred             c-------cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccc-----CH---H-----HHHHHHH
Confidence            4       2689999999642     11  367899999999999999987322100     00   0     2233444


Q ss_pred             HHHHhhcCCCeEEEEeecCCc---eEEEEEc
Q 029764          160 LNRSLADDPRVQLSHVALGDG---ITICRRI  187 (188)
Q Consensus       160 ~~~~~~~~~~~~~~~lp~~~G---~~~~~~~  187 (188)
                      ..+.+..+..+....+|..+|   +.++.+.
T Consensus       209 ~l~~~f~~v~~~~~~vP~~~g~~~~~~as~~  239 (281)
T 1mjf_A          209 EMKKVFDRVYYYSFPVIGYASPWAFLVGVKG  239 (281)
T ss_dssp             HHHHHCSEEEEEEECCTTSSSSEEEEEEEES
T ss_pred             HHHHHCCceEEEEEecCCCCceEEEEEeeCC
Confidence            444443333445556676544   7777763

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.71  E-value=3.2e-16  Score=123.69  Aligned_cols=119  Identities=22%  Similarity=0.402  Sum_probs=93.2

Q ss_pred             HHHHHHH--HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc--CC-CCcEEEEEcchHHH
Q 029764           10 QLMAMLL--RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GV-DHKINFIESEALSV   84 (188)
Q Consensus        10 ~~l~~l~--~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~-~~~~~~~~~d~~~~   84 (188)
                      ++|..+.  ...++++|||||||+|..+..+++..+ ..+|+++|+++++++.|++++...  ++ .++++++++|+.+.
T Consensus       108 e~L~~l~l~~~~~~~~VLdIG~G~G~~a~~la~~~~-~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~  186 (334)
T 1xj5_A          108 EMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAF  186 (334)
T ss_dssp             HHHHHHHHTTSSCCCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHH
T ss_pred             HHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHH
Confidence            4444443  235678999999999999999998754 689999999999999999998753  33 35799999999887


Q ss_pred             HHHHhhcccCCCceeEEEEeCCc----cc---hHHHHHHHHhccCcCeEEEEe-cccc
Q 029764           85 LDQLLKYSENEGSFDYAFVDADK----DN---YCNYHERLMKLLKVGGIAVYD-NTLW  134 (188)
Q Consensus        85 ~~~~~~~~~~~~~~D~i~id~~~----~~---~~~~~~~~~~~L~~gG~lv~~-~~~~  134 (188)
                      ++.+     ..++||+|++|...    ..   ...+++.+.++|+|||+++++ +..|
T Consensus       187 l~~~-----~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~  239 (334)
T 1xj5_A          187 LKNA-----AEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLW  239 (334)
T ss_dssp             HHTS-----CTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred             HHhc-----cCCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCCcc
Confidence            6543     13689999998531    11   468999999999999999996 4444

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.71  E-value=5.4e-16  Score=117.00  Aligned_cols=105  Identities=15%  Similarity=0.177  Sum_probs=88.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++.+|||+|||+|..+..++...+ +.+|+++|+++++++.++++++..++. +++++++|+.+..... .   ..++|
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~-~---~~~~f  142 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFP-HLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRK-D---VRESY  142 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCT-T---TTTCE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEeccHHHhcccc-c---ccCCc
Confidence            3678999999999999999997655 789999999999999999999998876 4999999997642100 0   03689


Q ss_pred             eEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           99 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      |+|++.. ..+...+++.+.++|+|||.+++.
T Consensus       143 D~V~~~~-~~~~~~~l~~~~~~LkpgG~l~~~  173 (240)
T 1xdz_A          143 DIVTARA-VARLSVLSELCLPLVKKNGLFVAL  173 (240)
T ss_dssp             EEEEEEC-CSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             cEEEEec-cCCHHHHHHHHHHhcCCCCEEEEE
Confidence            9999987 456788999999999999999885

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.71  E-value=3.6e-16  Score=113.12  Aligned_cols=120  Identities=22%  Similarity=0.228  Sum_probs=99.1

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029764            4 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   83 (188)
Q Consensus         4 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   83 (188)
                      +..+....+...+...++.+|||+|||+|..+..++...   .+++++|+++++++.+++++...++.++++++++|..+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   93 (192)
T 1l3i_A           17 TAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE   93 (192)
T ss_dssp             CCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH
T ss_pred             ChHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH
Confidence            344555555555566778899999999999999999864   69999999999999999999988876789999999876


Q ss_pred             HHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           84 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        84 ~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      .++.       .++||+|+++....+...+++.+.++|+|||.+++....
T Consensus        94 ~~~~-------~~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~~~  136 (192)
T 1l3i_A           94 ALCK-------IPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAIL  136 (192)
T ss_dssp             HHTT-------SCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred             hccc-------CCCCCEEEECCchHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence            4332       268999999876667789999999999999999986543

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.71  E-value=1.6e-16  Score=116.91  Aligned_cols=118  Identities=13%  Similarity=0.105  Sum_probs=91.1

Q ss_pred             HHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCC-CcEEEEEcchHHHHHHH
Q 029764           10 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQL   88 (188)
Q Consensus        10 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~   88 (188)
                      .++..+....++.+|||+|||+|..+..++...  ..+|+++|+++++++.|+++++..++. ++++++++|+.+..+.+
T Consensus        43 ~l~~~l~~~~~~~~vLDlGcGtG~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~  120 (201)
T 2ift_A           43 TLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQ--AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQP  120 (201)
T ss_dssp             HHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSC
T ss_pred             HHHHHHHHhcCCCeEEEcCCccCHHHHHHHHcc--CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhh
Confidence            334444333477899999999999999877652  359999999999999999999998874 57999999997764321


Q ss_pred             hhcccCCCc-eeEEEEeCC--ccchHHHHHHH--HhccCcCeEEEEecccc
Q 029764           89 LKYSENEGS-FDYAFVDAD--KDNYCNYHERL--MKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        89 ~~~~~~~~~-~D~i~id~~--~~~~~~~~~~~--~~~L~~gG~lv~~~~~~  134 (188)
                           ..++ ||+|+++..  .......++.+  .++|+|||.+++.....
T Consensus       121 -----~~~~~fD~I~~~~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~  166 (201)
T 2ift_A          121 -----QNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEKD  166 (201)
T ss_dssp             -----CSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred             -----ccCCCCCEEEECCCCCCccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence                 1367 999999865  34456777887  56899999999865443

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.70  E-value=5.8e-16  Score=112.07  Aligned_cols=103  Identities=13%  Similarity=0.109  Sum_probs=83.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++.+|||+|||+|..+..+++.   +.+|+++|+++++++.|+++++..++ +++++++++..+.. .+     ..++|
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~-~~-----~~~~f   90 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLD-HY-----VREPI   90 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGG-GT-----CCSCE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHH-hh-----ccCCc
Confidence            46679999999999999999986   67999999999999999999998887 67999997765432 22     14689


Q ss_pred             eEEEEeC-C-----------ccchHHHHHHHHhccCcCeEEEEec
Q 029764           99 DYAFVDA-D-----------KDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        99 D~i~id~-~-----------~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      |+|+++. .           .......++.+.++|||||.+++..
T Consensus        91 D~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  135 (185)
T 3mti_A           91 RAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMI  135 (185)
T ss_dssp             EEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEE
Confidence            9999872 1           1233467789999999999998853

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.70  E-value=6.4e-16  Score=110.10  Aligned_cols=106  Identities=13%  Similarity=0.128  Sum_probs=86.8

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   99 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   99 (188)
                      ++.+|||+|||+|..+..+++..+   +++++|+++++++.+++++...++  +++++++|+.+.++.....   .++||
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~---~~~~D  112 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGW---EAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFLPEAKAQ---GERFT  112 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTC---EEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHHHHHHHT---TCCEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCC---eEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHHHHhhhcc---CCceE
Confidence            778999999999999999998743   599999999999999999998876  6999999998866554321   34899


Q ss_pred             EEEEeCCc-cchHHHHHHHH--hccCcCeEEEEeccc
Q 029764          100 YAFVDADK-DNYCNYHERLM--KLLKVGGIAVYDNTL  133 (188)
Q Consensus       100 ~i~id~~~-~~~~~~~~~~~--~~L~~gG~lv~~~~~  133 (188)
                      +|+++... ......++.+.  ++|+|||.+++....
T Consensus       113 ~i~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~  149 (171)
T 1ws6_A          113 VAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPK  149 (171)
T ss_dssp             EEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred             EEEECCCCchhHHHHHHHHHhhcccCCCcEEEEEeCC
Confidence            99998533 45556777777  999999999986544

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.70  E-value=8.8e-16  Score=118.17  Aligned_cols=122  Identities=20%  Similarity=0.192  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029764            9 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   88 (188)
Q Consensus         9 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   88 (188)
                      ..++..++...++.+|||+|||+|..+..++..++..++|+++|+++.+++.++++++..++. +++++++|+.+....+
T Consensus        72 s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~  150 (274)
T 3ajd_A           72 SMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKDYL  150 (274)
T ss_dssp             GGHHHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHHHH
T ss_pred             HHHHHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcchhh
Confidence            345555666677889999999999999999998763489999999999999999999998876 6999999998764432


Q ss_pred             hhcccCCCceeEEEEeCCc---------------------cchHHHHHHHHhccCcCeEEEEecccc
Q 029764           89 LKYSENEGSFDYAFVDADK---------------------DNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        89 ~~~~~~~~~~D~i~id~~~---------------------~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      ...   .++||+|++|.+.                     .....+++.+.++|||||.+++.....
T Consensus       151 ~~~---~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~  214 (274)
T 3ajd_A          151 LKN---EIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM  214 (274)
T ss_dssp             HHT---TCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             hhc---cccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence            111   3689999999432                     233678899999999999999875543

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.69  E-value=5.4e-16  Score=114.17  Aligned_cols=106  Identities=14%  Similarity=0.105  Sum_probs=85.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++.+|||+|||+|..++.++...  ..+|+++|+++++++.|+++++..++ ++++++++|+.+.++..      .++|
T Consensus        53 ~~~~~vLDlgcG~G~~~~~l~~~~--~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~~~------~~~f  123 (202)
T 2fpo_A           53 IVDAQCLDCFAGSGALGLEALSRY--AAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQK------GTPH  123 (202)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSC------CCCE
T ss_pred             cCCCeEEEeCCCcCHHHHHHHhcC--CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHhhc------CCCC
Confidence            377899999999999999877652  35999999999999999999998887 57999999998765431      4689


Q ss_pred             eEEEEeCC--ccchHHHHHHHHh--ccCcCeEEEEeccc
Q 029764           99 DYAFVDAD--KDNYCNYHERLMK--LLKVGGIAVYDNTL  133 (188)
Q Consensus        99 D~i~id~~--~~~~~~~~~~~~~--~L~~gG~lv~~~~~  133 (188)
                      |+|+++..  .......++.+.+  +|+|||.+++....
T Consensus       124 D~V~~~~p~~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~  162 (202)
T 2fpo_A          124 NIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESEV  162 (202)
T ss_dssp             EEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred             CEEEECCCCCCCcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence            99999865  3345567777755  59999999886544

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.69  E-value=3.9e-16  Score=116.32  Aligned_cols=105  Identities=21%  Similarity=0.295  Sum_probs=87.7

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   99 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   99 (188)
                      +..+|||||||+|..+..+|...+ +.+|++||++++++..|++++...++. +++++++|+.+.++...    ..++||
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p-~~~v~giD~s~~~l~~a~~~~~~~~l~-nv~~~~~Da~~~l~~~~----~~~~~d  107 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRP-EQDFLGIEVHSPGVGACLASAHEEGLS-NLRVMCHDAVEVLHKMI----PDNSLR  107 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHTTCS-SEEEECSCHHHHHHHHS----CTTCEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCC-CCeEEEEEecHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHc----CCCChh
Confidence            457999999999999999999877 789999999999999999999988876 49999999988766532    247999


Q ss_pred             EEEEeC---Ccc--ch------HHHHHHHHhccCcCeEEEEe
Q 029764          100 YAFVDA---DKD--NY------CNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus       100 ~i~id~---~~~--~~------~~~~~~~~~~L~~gG~lv~~  130 (188)
                      .|++..   ++.  +.      ..+++.+.++|||||.+++.
T Consensus       108 ~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~  149 (218)
T 3dxy_A          108 MVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMA  149 (218)
T ss_dssp             EEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEE
Confidence            999862   221  11      25899999999999998874

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.68  E-value=2.3e-15  Score=115.92  Aligned_cols=106  Identities=16%  Similarity=0.206  Sum_probs=87.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc--CC-CCcEEEEEcchHHHHHHHhhcccCC
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GV-DHKINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~-~~~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      .++++|||||||+|..+..+++..+ ..+++++|+++++++.|++++...  ++ .++++++.+|+.+.++..      .
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~------~  146 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPS-VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS------E  146 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTT-CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC------C
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCC-CceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC------C
Confidence            4678999999999999999998643 679999999999999999987642  33 368999999998876542      4


Q ss_pred             CceeEEEEeCCccc-------hHHHHHHHHhccCcCeEEEEec
Q 029764           96 GSFDYAFVDADKDN-------YCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        96 ~~~D~i~id~~~~~-------~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      ++||+|++|.....       ..++++.+.++|+|||++++..
T Consensus       147 ~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~  189 (275)
T 1iy9_A          147 NQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (275)
T ss_dssp             SCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            78999999864321       2678999999999999999974

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.68  E-value=1.7e-16  Score=120.30  Aligned_cols=117  Identities=21%  Similarity=0.262  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029764            8 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   87 (188)
Q Consensus         8 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   87 (188)
                      ..+.+...+...++.+|||+|||+|..+..++...  +.+++++|+++++++.++++++..++.++++++++|+.+... 
T Consensus        24 ~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-  100 (256)
T 1nkv_A           24 KYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-  100 (256)
T ss_dssp             HHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-
T ss_pred             HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-
Confidence            33333334455677899999999999999999876  569999999999999999999998887789999999865311 


Q ss_pred             HhhcccCCCceeEEEEeCC---ccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           88 LLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        88 ~~~~~~~~~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                             .++||+|++...   ..+...+++++.++|||||.+++.+..+
T Consensus       101 -------~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~  143 (256)
T 1nkv_A          101 -------NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYW  143 (256)
T ss_dssp             -------SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEE
T ss_pred             -------CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCcc
Confidence                   378999998642   2356788999999999999999987655

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.68  E-value=1.1e-16  Score=121.50  Aligned_cols=116  Identities=22%  Similarity=0.279  Sum_probs=95.0

Q ss_pred             HHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029764           10 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   89 (188)
Q Consensus        10 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   89 (188)
                      .++..+....++.+|||+|||+|..+..+++..+  ++++++|+++.+++.+++++...++.++++++++|+.+. + + 
T Consensus        36 ~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~-  110 (257)
T 3f4k_A           36 KAVSFINELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNL-P-F-  110 (257)
T ss_dssp             HHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-S-S-
T ss_pred             HHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhC-C-C-
Confidence            3344333455677999999999999999999875  499999999999999999999999888899999998543 1 1 


Q ss_pred             hcccCCCceeEEEEeCC--ccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           90 KYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        90 ~~~~~~~~~D~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                          ..++||+|++...  +-+...+++.+.++|+|||.+++.+..+
T Consensus       111 ----~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  153 (257)
T 3f4k_A          111 ----QNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSEASW  153 (257)
T ss_dssp             ----CTTCEEEEEEESCSCCCCHHHHHHHHHTTEEEEEEEEEEEEEE
T ss_pred             ----CCCCEEEEEecChHhhcCHHHHHHHHHHHcCCCcEEEEEEeec
Confidence                2478999998742  2257789999999999999999988664

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.68  E-value=6.2e-16  Score=120.68  Aligned_cols=106  Identities=16%  Similarity=0.152  Sum_probs=87.4

Q ss_pred             cCCC--EEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           19 VNAK--KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        19 ~~~~--~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      .+++  +|||||||+|..+..+++.++ +.++++||+++++++.|++++.... .++++++++|+.+++..+     ..+
T Consensus        86 p~p~~~rVLdIG~G~G~la~~la~~~p-~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~Da~~~l~~~-----~~~  158 (317)
T 3gjy_A           86 QDASKLRITHLGGGACTMARYFADVYP-QSRNTVVELDAELARLSREWFDIPR-APRVKIRVDDARMVAESF-----TPA  158 (317)
T ss_dssp             SCGGGCEEEEESCGGGHHHHHHHHHST-TCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEESCHHHHHHTC-----CTT
T ss_pred             CCCCCCEEEEEECCcCHHHHHHHHHCC-CcEEEEEECCHHHHHHHHHhccccC-CCceEEEECcHHHHHhhc-----cCC
Confidence            4444  999999999999999999877 7799999999999999999875432 468999999999877543     136


Q ss_pred             ceeEEEEeCCcc-----c--hHHHHHHHHhccCcCeEEEEec
Q 029764           97 SFDYAFVDADKD-----N--YCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        97 ~~D~i~id~~~~-----~--~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      +||+|++|....     .  ..++++.+.++|+|||+++++.
T Consensus       159 ~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~  200 (317)
T 3gjy_A          159 SRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANC  200 (317)
T ss_dssp             CEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEe
Confidence            899999985221     1  2689999999999999999875

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.68  E-value=1.4e-15  Score=124.55  Aligned_cols=119  Identities=16%  Similarity=0.233  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029764            8 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   87 (188)
Q Consensus         8 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   87 (188)
                      .+.++..++...++.+|||+|||+|..+..+|..++..++|+++|+++++++.+++++++.|+.  +.++++|+.+....
T Consensus        89 ss~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~~~  166 (464)
T 3m6w_A           89 SAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALAEA  166 (464)
T ss_dssp             TTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHHHH
T ss_pred             HHHHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhhhh
Confidence            3456666667778889999999999999999998875689999999999999999999999986  89999999876433


Q ss_pred             HhhcccCCCceeEEEEeCCcc---------c----------------hHHHHHHHHhccCcCeEEEEecccc
Q 029764           88 LLKYSENEGSFDYAFVDADKD---------N----------------YCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        88 ~~~~~~~~~~~D~i~id~~~~---------~----------------~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      +      .++||+|++|.+..         +                ...+++.+.++|||||.+++....+
T Consensus       167 ~------~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~  232 (464)
T 3m6w_A          167 F------GTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF  232 (464)
T ss_dssp             H------CSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred             c------cccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence            3      47899999985421         1                1567888999999999999865554

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.67  E-value=2.5e-16  Score=120.17  Aligned_cols=114  Identities=18%  Similarity=0.206  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHc-CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029764            9 GQLMAMLLRLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   87 (188)
Q Consensus         9 ~~~l~~l~~~~-~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   87 (188)
                      +.+|..++... ++.+|||+|||+|..+..++...+  .+|+++|+++.+++.|++++..+++.++++++++|+.+....
T Consensus        37 ~~ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~--~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~  114 (259)
T 3lpm_A           37 AVLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTK--AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDL  114 (259)
T ss_dssp             HHHHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCC--CEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGT
T ss_pred             HHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcC--CcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhh
Confidence            45666666666 788999999999999999998754  399999999999999999999999988899999999876432


Q ss_pred             HhhcccCCCceeEEEEeCCc-----------------------cchHHHHHHHHhccCcCeEEEE
Q 029764           88 LLKYSENEGSFDYAFVDADK-----------------------DNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        88 ~~~~~~~~~~~D~i~id~~~-----------------------~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      +     ..++||+|+++.+.                       .....+++.+.++|+|||.+++
T Consensus       115 ~-----~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~  174 (259)
T 3lpm_A          115 I-----PKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANF  174 (259)
T ss_dssp             S-----CTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred             h-----ccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEE
Confidence            2     14789999997431                       1235688999999999999998

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.67  E-value=1.7e-16  Score=115.92  Aligned_cols=109  Identities=11%  Similarity=0.162  Sum_probs=90.0

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      ...++.+|||+|||+|..+..+++.+.+.++++++|+++++++.|+++++..++.++++++++|+.+.....      .+
T Consensus        19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------~~   92 (197)
T 3eey_A           19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYI------DC   92 (197)
T ss_dssp             HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTC------CS
T ss_pred             cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhc------cC
Confidence            345667999999999999999999864467999999999999999999999888778999999986653221      47


Q ss_pred             ceeEEEEeCCc------------cchHHHHHHHHhccCcCeEEEEec
Q 029764           97 SFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        97 ~~D~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      +||+|+++...            .....+++.+.++|+|||.+++..
T Consensus        93 ~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~  139 (197)
T 3eey_A           93 PVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVI  139 (197)
T ss_dssp             CEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEE
Confidence            89999988421            133578999999999999999864

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.67  E-value=1.6e-15  Score=111.44  Aligned_cols=114  Identities=15%  Similarity=0.189  Sum_probs=93.4

Q ss_pred             HHHHHHHHHH-HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764            8 AGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   86 (188)
Q Consensus         8 ~~~~l~~l~~-~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   86 (188)
                      ...++..+.. ..++.+|||+|||+|..+..+++. + ..+++++|+++.+++.|++++...+..+ ++++.+|..+.. 
T Consensus        47 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~-  122 (205)
T 3grz_A           47 TQLAMLGIERAMVKPLTVADVGTGSGILAIAAHKL-G-AKSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLADV-  122 (205)
T ss_dssp             HHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTTC-
T ss_pred             HHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEeccccccC-
Confidence            3444454444 346679999999999999998874 3 5699999999999999999999888765 999999986531 


Q ss_pred             HHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           87 QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        87 ~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                              .++||+|+++........+++.+.++|+|||.+++.+..
T Consensus       123 --------~~~fD~i~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  161 (205)
T 3grz_A          123 --------DGKFDLIVANILAEILLDLIPQLDSHLNEDGQVIFSGID  161 (205)
T ss_dssp             --------CSCEEEEEEESCHHHHHHHGGGSGGGEEEEEEEEEEEEE
T ss_pred             --------CCCceEEEECCcHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence                    478999999987777778889999999999999996544

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.67  E-value=1.2e-16  Score=122.23  Aligned_cols=108  Identities=19%  Similarity=0.237  Sum_probs=91.9

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..++.+|||||||+|..+..++.. + ..+++++|+++.+++.+++++...++.++++++++|..+..  +     ..++
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~-----~~~~  114 (267)
T 3kkz_A           44 LTEKSLIADIGCGTGGQTMVLAGH-V-TGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLP--F-----RNEE  114 (267)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHTT-C-SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC--C-----CTTC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhc-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCC--C-----CCCC
Confidence            456789999999999999999987 3 67999999999999999999999998888999999986531  1     2478


Q ss_pred             eeEEEEeCC--ccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           98 FDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        98 ~D~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      ||+|++...  +-+...+++.+.++|+|||.+++.+..+
T Consensus       115 fD~i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  153 (267)
T 3kkz_A          115 LDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSECSW  153 (267)
T ss_dssp             EEEEEESSCGGGTCHHHHHHHHGGGEEEEEEEEEEEEEE
T ss_pred             EEEEEEcCCceecCHHHHHHHHHHHcCCCCEEEEEEeee
Confidence            999998753  2256788999999999999999988765

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.67  E-value=2.4e-15  Score=116.93  Aligned_cols=107  Identities=17%  Similarity=0.187  Sum_probs=86.3

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHh--cCC-CCcEEEEEcchHHHHHHHhhcccC
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK--AGV-DHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~--~~~-~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      ..++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.+++++..  .++ .++++++.+|+.+.++..      
T Consensus        88 ~~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------  160 (296)
T 1inl_A           88 HPNPKKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF------  160 (296)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC------
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC------
Confidence            34678999999999999999998754 68999999999999999999764  223 357999999998765432      


Q ss_pred             CCceeEEEEeCCcc--------chHHHHHHHHhccCcCeEEEEec
Q 029764           95 EGSFDYAFVDADKD--------NYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        95 ~~~~D~i~id~~~~--------~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      .++||+|++|....        ...++++.+.++|+|||++++..
T Consensus       161 ~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  205 (296)
T 1inl_A          161 KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET  205 (296)
T ss_dssp             SSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            46899999986432        23688999999999999999963

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.67  E-value=1.2e-14  Score=110.63  Aligned_cols=115  Identities=19%  Similarity=0.244  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHH-cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029764            6 PDAGQLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   84 (188)
Q Consensus         6 ~~~~~~l~~l~~~-~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   84 (188)
                      +.+..++..+... .++.+|||+|||+|..+..+++.   +.+++++|+++.+++.+++++..+++.  +++..+|..+.
T Consensus       105 ~tt~~~~~~l~~~~~~~~~VLDiGcG~G~l~~~la~~---g~~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~  179 (254)
T 2nxc_A          105 ETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKL---GGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAA  179 (254)
T ss_dssp             HHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHh---CCeEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhc
Confidence            3344455555443 46779999999999999998885   349999999999999999999988865  88999998764


Q ss_pred             HHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           85 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        85 ~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      ++        .++||+|+++........++..+.++|+|||.+++.+..
T Consensus       180 ~~--------~~~fD~Vv~n~~~~~~~~~l~~~~~~LkpgG~lils~~~  220 (254)
T 2nxc_A          180 LP--------FGPFDLLVANLYAELHAALAPRYREALVPGGRALLTGIL  220 (254)
T ss_dssp             GG--------GCCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             Cc--------CCCCCEEEECCcHHHHHHHHHHHHHHcCCCCEEEEEeec
Confidence            22        368999999876666778899999999999999997654

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.67  E-value=3.2e-15  Score=115.03  Aligned_cols=117  Identities=20%  Similarity=0.270  Sum_probs=96.5

Q ss_pred             cHHHHHHHHHHHHH--cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchH
Q 029764            5 APDAGQLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   82 (188)
Q Consensus         5 ~~~~~~~l~~l~~~--~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   82 (188)
                      .+++..++..++..  .++.+|||+|||+|..+..++...+ +.+++++|+++++++.+++++...++. +++++++|..
T Consensus        92 r~~te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~~  169 (276)
T 2b3t_A           92 RPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERP-DCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWF  169 (276)
T ss_dssp             CTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCT-TSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTT
T ss_pred             CchHHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcchh
Confidence            46677777777765  4567999999999999999998876 789999999999999999999988876 6999999987


Q ss_pred             HHHHHHhhcccCCCceeEEEEeCCc----------------------------cchHHHHHHHHhccCcCeEEEEec
Q 029764           83 SVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        83 ~~~~~~~~~~~~~~~~D~i~id~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      +.++        .++||+|+++.+.                            ..+..+++.+.++|+|||++++..
T Consensus       170 ~~~~--------~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~  238 (276)
T 2b3t_A          170 SALA--------GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH  238 (276)
T ss_dssp             GGGT--------TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             hhcc--------cCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            6421        3689999997321                            234677888999999999999863

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.66  E-value=2.1e-16  Score=120.81  Aligned_cols=119  Identities=13%  Similarity=0.173  Sum_probs=93.5

Q ss_pred             HHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHh---cCCCCcEEEEEcchHHHHHH
Q 029764           11 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK---AGVDHKINFIESEALSVLDQ   87 (188)
Q Consensus        11 ~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~---~~~~~~~~~~~~d~~~~~~~   87 (188)
                      +|..++...++.+|||+|||+|..++.++...+ +.+|+++|+++++++.|++++..   +++.++++++++|..+..+.
T Consensus        27 lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~-~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~  105 (260)
T 2ozv_A           27 LLASLVADDRACRIADLGAGAGAAGMAVAARLE-KAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKA  105 (260)
T ss_dssp             HHHHTCCCCSCEEEEECCSSSSHHHHHHHHHCT-TEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHH
T ss_pred             HHHHHhcccCCCEEEEeCChHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhh
Confidence            445555555677999999999999999999876 78999999999999999999988   88877899999999776442


Q ss_pred             HhhcccCCCceeEEEEeCCc---------------------cchHHHHHHHHhccCcCeEEEEe
Q 029764           88 LLKYSENEGSFDYAFVDADK---------------------DNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        88 ~~~~~~~~~~~D~i~id~~~---------------------~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ........++||+|+++.+.                     .....+++.+.++|+|||.+++.
T Consensus       106 ~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~  169 (260)
T 2ozv_A          106 RVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLI  169 (260)
T ss_dssp             HHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEE
Confidence            21100124689999998321                     12567889999999999999873

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.66  E-value=1.7e-15  Score=117.84  Aligned_cols=114  Identities=9%  Similarity=0.095  Sum_probs=94.2

Q ss_pred             HHHHHHHH---HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764           10 QLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   86 (188)
Q Consensus        10 ~~l~~l~~---~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   86 (188)
                      +.+..++.   ..++.+|||||||+|..+..+++..+  .+|+++|+++++++.+++++...++.++++++.+|..+.  
T Consensus        59 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--  134 (302)
T 3hem_A           59 AKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF--  134 (302)
T ss_dssp             HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC--
T ss_pred             HHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc--
Confidence            34444444   34667999999999999999998753  699999999999999999999999888899999998654  


Q ss_pred             HHhhcccCCCceeEEEEeCCc------------cchHHHHHHHHhccCcCeEEEEeccccC
Q 029764           87 QLLKYSENEGSFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDNTLWG  135 (188)
Q Consensus        87 ~~~~~~~~~~~~D~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~~~~  135 (188)
                              .++||+|++....            .....+++.+.++|+|||.+++.+....
T Consensus       135 --------~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  187 (302)
T 3hem_A          135 --------DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP  187 (302)
T ss_dssp             --------CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred             --------CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEecc
Confidence                    3789999987532            2337899999999999999999877653

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.66  E-value=8.7e-15  Score=115.50  Aligned_cols=109  Identities=16%  Similarity=0.234  Sum_probs=89.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCC-cEEEEEcchHHHHHHHhhcccCCCc
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      .++.+|||+|||+|..++.++..   +.+|+++|+++.+++.|++|++.+++.+ +++++++|+.+.++.....   .++
T Consensus       152 ~~~~~VLDlgcGtG~~sl~la~~---ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~---~~~  225 (332)
T 2igt_A          152 DRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERR---GST  225 (332)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHH---TCC
T ss_pred             CCCCcEEEcccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhc---CCC
Confidence            45679999999999999999985   4599999999999999999999988876 5999999998876553221   368


Q ss_pred             eeEEEEeCCc-------------cchHHHHHHHHhccCcCeEEEEeccc
Q 029764           98 FDYAFVDADK-------------DNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        98 ~D~i~id~~~-------------~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      ||+|++|.+.             ..+..+++.+.++|+|||++++....
T Consensus       226 fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~  274 (332)
T 2igt_A          226 YDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY  274 (332)
T ss_dssp             BSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred             ceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence            9999998642             12567888899999999997775444

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.66  E-value=2.9e-16  Score=119.23  Aligned_cols=116  Identities=21%  Similarity=0.273  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029764            6 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   85 (188)
Q Consensus         6 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   85 (188)
                      +.....+...+...++.+|||+|||+|..+..++..+.+..+++++|+++++++.|+++++..++.++++++++|+.+.+
T Consensus        79 ~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  158 (255)
T 3mb5_A           79 PKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGI  158 (255)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCC
T ss_pred             HhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhcc
Confidence            34445555556677888999999999999999999844478999999999999999999999998888999999987542


Q ss_pred             HHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           86 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        86 ~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                              ..++||+|+++.  .....+++.+.+.|+|||.+++..
T Consensus       159 --------~~~~~D~v~~~~--~~~~~~l~~~~~~L~~gG~l~~~~  194 (255)
T 3mb5_A          159 --------EEENVDHVILDL--PQPERVVEHAAKALKPGGFFVAYT  194 (255)
T ss_dssp             --------CCCSEEEEEECS--SCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             --------CCCCcCEEEECC--CCHHHHHHHHHHHcCCCCEEEEEE
Confidence                    246799999974  344678999999999999999864

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.66  E-value=6.8e-16  Score=117.24  Aligned_cols=104  Identities=19%  Similarity=0.278  Sum_probs=87.9

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   99 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   99 (188)
                      ++.+|||+|||+|..++.++...+ +.+|+++|+++++++.++++++..++.+ ++++++|+.+.....    ...++||
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~l~~-v~~~~~d~~~~~~~~----~~~~~fD  153 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRP-ELELVLVDATRKKVAFVERAIEVLGLKG-ARALWGRAEVLAREA----GHREAYA  153 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEECCHHHHTTST----TTTTCEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCc-eEEEECcHHHhhccc----ccCCCce
Confidence            467999999999999999999876 7899999999999999999999999865 999999997653210    0137899


Q ss_pred             EEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764          100 YAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus       100 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      +|++.+. .+...+++.+.++|+|||.+++-
T Consensus       154 ~I~s~a~-~~~~~ll~~~~~~LkpgG~l~~~  183 (249)
T 3g89_A          154 RAVARAV-APLCVLSELLLPFLEVGGAAVAM  183 (249)
T ss_dssp             EEEEESS-CCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             EEEECCc-CCHHHHHHHHHHHcCCCeEEEEE
Confidence            9999864 35678899999999999998873

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.66  E-value=4.1e-15  Score=116.88  Aligned_cols=107  Identities=19%  Similarity=0.295  Sum_probs=87.7

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc--CC-CCcEEEEEcchHHHHHHHhhcccC
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GV-DHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~-~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      ..++++|||||||+|..+..+++..+ ..+++++|+++++++.|++++...  ++ .++++++.+|+.+.++..      
T Consensus       114 ~~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------  186 (321)
T 2pt6_A          114 SKEPKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV------  186 (321)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC------
T ss_pred             CCCCCEEEEEcCCccHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhc------
Confidence            45678999999999999999998654 689999999999999999998652  23 357999999998876542      


Q ss_pred             CCceeEEEEeCCc-----cc-h-HHHHHHHHhccCcCeEEEEec
Q 029764           95 EGSFDYAFVDADK-----DN-Y-CNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        95 ~~~~D~i~id~~~-----~~-~-~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      .++||+|++|...     .. + .++++.+.+.|+|||++++..
T Consensus       187 ~~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  230 (321)
T 2pt6_A          187 TNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC  230 (321)
T ss_dssp             CSCEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            4789999998631     11 1 688999999999999999963

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.66  E-value=8e-15  Score=105.30  Aligned_cols=113  Identities=20%  Similarity=0.155  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029764            6 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   85 (188)
Q Consensus         6 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   85 (188)
                      +.....+...+...++.+|||+|||+|..+..++.  + ..+++++|+++++++.+++++...++ ++++++++|..+.+
T Consensus        21 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~--~-~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~   96 (183)
T 2yxd_A           21 EEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK--R-CKFVYAIDYLDGAIEVTKQNLAKFNI-KNCQIIKGRAEDVL   96 (183)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT--T-SSEEEEEECSHHHHHHHHHHHHHTTC-CSEEEEESCHHHHG
T ss_pred             HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh--c-CCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEECCccccc
Confidence            44444444455556778999999999999999998  3 78999999999999999999998887 46999999987732


Q ss_pred             HHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           86 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        86 ~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      +        .++||+|+++.. .....+++.+.++  |||.+++....
T Consensus        97 ~--------~~~~D~i~~~~~-~~~~~~l~~~~~~--~gG~l~~~~~~  133 (183)
T 2yxd_A           97 D--------KLEFNKAFIGGT-KNIEKIIEILDKK--KINHIVANTIV  133 (183)
T ss_dssp             G--------GCCCSEEEECSC-SCHHHHHHHHHHT--TCCEEEEEESC
T ss_pred             c--------CCCCcEEEECCc-ccHHHHHHHHhhC--CCCEEEEEecc
Confidence            2        368999999876 6778888998888  99999987543

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.66  E-value=8.8e-16  Score=111.26  Aligned_cols=112  Identities=15%  Similarity=0.144  Sum_probs=90.5

Q ss_pred             HHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCC-cEEEEEcchHHHHHHHh
Q 029764           11 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLDQLL   89 (188)
Q Consensus        11 ~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~   89 (188)
                      .+...+...++.+|||+|||+|..+..++..   +.+++++|+++++++.+++++...++.+ +++++.+|..+..+   
T Consensus        43 ~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~---  116 (194)
T 1dus_A           43 ILVENVVVDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK---  116 (194)
T ss_dssp             HHHHHCCCCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT---
T ss_pred             HHHHHcccCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc---
Confidence            3333334457789999999999999999987   5799999999999999999999888764 59999999866321   


Q ss_pred             hcccCCCceeEEEEeCCc----cchHHHHHHHHhccCcCeEEEEeccc
Q 029764           90 KYSENEGSFDYAFVDADK----DNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        90 ~~~~~~~~~D~i~id~~~----~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                           .++||+|+++...    .....+++.+.++|+|||.+++....
T Consensus       117 -----~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  159 (194)
T 1dus_A          117 -----DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQT  159 (194)
T ss_dssp             -----TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred             -----cCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECC
Confidence                 3689999998642    34567889999999999999987544

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.66  E-value=5e-16  Score=115.81  Aligned_cols=113  Identities=11%  Similarity=0.104  Sum_probs=92.5

Q ss_pred             HHHHHHHcC-CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhh
Q 029764           12 MAMLLRLVN-AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK   90 (188)
Q Consensus        12 l~~l~~~~~-~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   90 (188)
                      |++++...+ +.+|+|||||+|+.++.++...+ ..+|+++|+++.+++.|++|++.+++.++++++.+|..+.++.   
T Consensus         6 L~~l~~~v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~---   81 (225)
T 3kr9_A            6 LELVASFVSQGAILLDVGSDHAYLPIELVERGQ-IKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE---   81 (225)
T ss_dssp             HHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG---
T ss_pred             HHHHHHhCCCCCEEEEeCCCcHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc---
Confidence            555666554 45899999999999999999765 6799999999999999999999999998999999999764331   


Q ss_pred             cccCCCceeEEEEeC-CccchHHHHHHHHhccCcCeEEEEecc
Q 029764           91 YSENEGSFDYAFVDA-DKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        91 ~~~~~~~~D~i~id~-~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                          ..+||+|++.+ .......+++...+.|+++|++|+.-.
T Consensus        82 ----~~~~D~IviaG~Gg~~i~~Il~~~~~~L~~~~~lVlq~~  120 (225)
T 3kr9_A           82 ----TDQVSVITIAGMGGRLIARILEEGLGKLANVERLILQPN  120 (225)
T ss_dssp             ----GGCCCEEEEEEECHHHHHHHHHHTGGGCTTCCEEEEEES
T ss_pred             ----CcCCCEEEEcCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence                12699998764 233467888999999999999998643

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.65  E-value=6.1e-16  Score=114.11  Aligned_cols=112  Identities=21%  Similarity=0.237  Sum_probs=90.5

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029764            5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   84 (188)
Q Consensus         5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   84 (188)
                      .+.....+...+...++.+|||+|||+|..+..+++.   +.+++++|+++++++.+++++...++. +++++.+|+.+.
T Consensus        62 ~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~  137 (210)
T 3lbf_A           62 QPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL---VQHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHGDGWQG  137 (210)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGC
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEECCcccC
Confidence            3445555555556678889999999999999999987   579999999999999999999998876 699999998764


Q ss_pred             HHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           85 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        85 ~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ...       .++||+|+++.......   +.+.++|+|||.+++.
T Consensus       138 ~~~-------~~~~D~i~~~~~~~~~~---~~~~~~L~pgG~lv~~  173 (210)
T 3lbf_A          138 WQA-------RAPFDAIIVTAAPPEIP---TALMTQLDEGGILVLP  173 (210)
T ss_dssp             CGG-------GCCEEEEEESSBCSSCC---THHHHTEEEEEEEEEE
T ss_pred             Ccc-------CCCccEEEEccchhhhh---HHHHHhcccCcEEEEE
Confidence            322       37899999986444332   3678999999999985

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.65  E-value=2e-15  Score=112.84  Aligned_cols=112  Identities=13%  Similarity=0.133  Sum_probs=92.2

Q ss_pred             HHHHHHHc-CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhh
Q 029764           12 MAMLLRLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK   90 (188)
Q Consensus        12 l~~l~~~~-~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   90 (188)
                      |+.++... ++.+|+|||||+|+.++.+++..+ ..+|+++|+++.+++.|++|++.+++.++++++.+|..+.+..   
T Consensus        12 L~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~---   87 (230)
T 3lec_A           12 LQKVANYVPKGARLLDVGSDHAYLPIFLLQMGY-CDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEE---   87 (230)
T ss_dssp             HHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTC-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG---
T ss_pred             HHHHHHhCCCCCEEEEECCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccc---
Confidence            44555554 455899999999999999999754 6789999999999999999999999998999999999875422   


Q ss_pred             cccCCCceeEEEEeC-CccchHHHHHHHHhccCcCeEEEEec
Q 029764           91 YSENEGSFDYAFVDA-DKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        91 ~~~~~~~~D~i~id~-~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                          ..+||+|++.+ ...-...+++...+.|+++|.+|+..
T Consensus        88 ----~~~~D~IviaGmGg~lI~~IL~~~~~~l~~~~~lIlqp  125 (230)
T 3lec_A           88 ----ADNIDTITICGMGGRLIADILNNDIDKLQHVKTLVLQP  125 (230)
T ss_dssp             ----GGCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEE
T ss_pred             ----ccccCEEEEeCCchHHHHHHHHHHHHHhCcCCEEEEEC
Confidence                23799998764 33456778888889999999999875

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.65  E-value=5.1e-16  Score=114.39  Aligned_cols=121  Identities=15%  Similarity=0.235  Sum_probs=77.4

Q ss_pred             CcHHHHHHHHHHHHH----cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc
Q 029764            4 TAPDAGQLMAMLLRL----VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   79 (188)
Q Consensus         4 ~~~~~~~~l~~l~~~----~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~   79 (188)
                      ..+++..++..++..    .++.+|||+|||+|..+..+++..+ +.+++++|+++.+++.+++++...+.  +++++++
T Consensus        10 p~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~   86 (215)
T 4dzr_A           10 PRPDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACP-GVSVTAVDLSMDALAVARRNAERFGA--VVDWAAA   86 (215)
T ss_dssp             CCHHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCT-TEEEEEEECC---------------------CCHH
T ss_pred             CCccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEc
Confidence            456777777777765    5677999999999999999999876 78999999999999999999888775  6889999


Q ss_pred             chHHHHHHHhhcccCCCceeEEEEeCCcc-----------------------------chHHHHHHHHhccCcCeE-EEE
Q 029764           80 EALSVLDQLLKYSENEGSFDYAFVDADKD-----------------------------NYCNYHERLMKLLKVGGI-AVY  129 (188)
Q Consensus        80 d~~~~~~~~~~~~~~~~~~D~i~id~~~~-----------------------------~~~~~~~~~~~~L~~gG~-lv~  129 (188)
                      |+.+.++....   ..++||+|+++.+..                             .+..+++.+.++|+|||. +++
T Consensus        87 d~~~~~~~~~~---~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  163 (215)
T 4dzr_A           87 DGIEWLIERAE---RGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFL  163 (215)
T ss_dssp             HHHHHHHHHHH---TTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEE
T ss_pred             chHhhhhhhhh---ccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence            98875443111   137899999963210                             015667777899999999 555


Q ss_pred             e
Q 029764          130 D  130 (188)
Q Consensus       130 ~  130 (188)
                      .
T Consensus       164 ~  164 (215)
T 4dzr_A          164 E  164 (215)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.65  E-value=2.4e-15  Score=111.54  Aligned_cols=105  Identities=14%  Similarity=0.281  Sum_probs=86.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++.+|||||||+|..+..+|+..+ +.+++++|++++++..|++++...++. +++++++|+.+....+     ..++|
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~giD~s~~~l~~a~~~~~~~~~~-nv~~~~~d~~~l~~~~-----~~~~~  109 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQNP-DINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLTDVF-----EPGEV  109 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHHHHC-----CTTSC
T ss_pred             CCCceEEEEecCCCHHHHHHHHHCC-CCCEEEEEechHHHHHHHHHHHHcCCC-CEEEEeCCHHHHHhhc-----CcCCc
Confidence            3567999999999999999999876 789999999999999999999988874 5999999998742222     24689


Q ss_pred             eEEEEeCC---cc--c------hHHHHHHHHhccCcCeEEEEe
Q 029764           99 DYAFVDAD---KD--N------YCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        99 D~i~id~~---~~--~------~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      |.|++...   ..  +      ...+++.+.++|+|||.+++.
T Consensus       110 d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~  152 (213)
T 2fca_A          110 KRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK  152 (213)
T ss_dssp             CEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred             CEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEE
Confidence            99988632   11  0      367899999999999999875

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.64  E-value=5.1e-15  Score=109.67  Aligned_cols=112  Identities=19%  Similarity=0.281  Sum_probs=92.2

Q ss_pred             HHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764           16 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      +...++.+|||+|||+|..+..+++..++..+++++|+++++++.+++++...++. +++++.+|..+..  +     ..
T Consensus        33 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~--~-----~~  104 (219)
T 3dh0_A           33 FGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKIP--L-----PD  104 (219)
T ss_dssp             HTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBCS--S-----CS
T ss_pred             hCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccCC--C-----CC
Confidence            34567789999999999999999998744689999999999999999999888876 6999999986531  1     24


Q ss_pred             CceeEEEEeCC---ccchHHHHHHHHhccCcCeEEEEeccccC
Q 029764           96 GSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWG  135 (188)
Q Consensus        96 ~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  135 (188)
                      ++||+|++...   ..+...+++.+.++|+|||.+++.+....
T Consensus       105 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  147 (219)
T 3dh0_A          105 NTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKE  147 (219)
T ss_dssp             SCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred             CCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEeccc
Confidence            78999998753   34567899999999999999999765543

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.64  E-value=1.5e-15  Score=112.57  Aligned_cols=104  Identities=16%  Similarity=0.311  Sum_probs=86.5

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   99 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   99 (188)
                      ++.+|||+|||+|..+..++...+ +.+++++|+++.+++.|++++...++ ++++++++|+.+. +...    ..++||
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~-~~~~----~~~~~D  113 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDL-TDYF----EDGEID  113 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCG-GGTS----CTTCCS
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCC-CCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHH-Hhhc----CCCCCC
Confidence            467999999999999999999887 78999999999999999999998887 5799999998763 2211    246899


Q ss_pred             EEEEeCCcc-----------chHHHHHHHHhccCcCeEEEEe
Q 029764          100 YAFVDADKD-----------NYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus       100 ~i~id~~~~-----------~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      +|++.....           ....+++.+.++|+|||.+++.
T Consensus       114 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  155 (214)
T 1yzh_A          114 RLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK  155 (214)
T ss_dssp             EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred             EEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEE
Confidence            999885321           1357899999999999999884

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.64  E-value=1.3e-15  Score=114.53  Aligned_cols=116  Identities=18%  Similarity=0.177  Sum_probs=88.0

Q ss_pred             HHHHHHHHH--cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029764           10 QLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   87 (188)
Q Consensus        10 ~~l~~l~~~--~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   87 (188)
                      .++..++..  .++.+|||+|||+|..+..++...  ..+++++|+++++++.|+++.+..+  .+++++++|+.+..+.
T Consensus        48 ~~~~~l~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~  123 (236)
T 1zx0_A           48 PYMHALAAAASSKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPT  123 (236)
T ss_dssp             HHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGG
T ss_pred             HHHHHHHhhcCCCCCeEEEEeccCCHHHHHHHhcC--CCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhcc
Confidence            344444443  456799999999999999997642  3489999999999999999887665  5799999999876433


Q ss_pred             HhhcccCCCceeEEEEeCC--------ccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           88 LLKYSENEGSFDYAFVDAD--------KDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        88 ~~~~~~~~~~~D~i~id~~--------~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      +     ..++||+|++|..        ......+++++.++|||||.+++.+...
T Consensus       124 ~-----~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~  173 (236)
T 1zx0_A          124 L-----PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTS  173 (236)
T ss_dssp             S-----CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHH
T ss_pred             c-----CCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecCc
Confidence            3     2478999999421        1122356899999999999999876553

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.64  E-value=8.4e-16  Score=113.51  Aligned_cols=116  Identities=18%  Similarity=0.275  Sum_probs=93.3

Q ss_pred             HHHHHHHHHc--CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029764           10 QLMAMLLRLV--NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   87 (188)
Q Consensus        10 ~~l~~l~~~~--~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   87 (188)
                      .+...++...  ++.+|||+|||+|..+..+++. + +.+++++|+++.+++.+++++...++.++++++++|..+..  
T Consensus        31 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--  106 (219)
T 3dlc_A           31 IIAENIINRFGITAGTCIDIGSGPGALSIALAKQ-S-DFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIP--  106 (219)
T ss_dssp             HHHHHHHHHHCCCEEEEEEETCTTSHHHHHHHHH-S-EEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCS--
T ss_pred             HHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCC--
Confidence            3444444332  2339999999999999999987 4 68999999999999999999999988888999999986531  


Q ss_pred             HhhcccCCCceeEEEEeCC---ccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           88 LLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        88 ~~~~~~~~~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      +     ..++||+|++...   ..+...+++++.++|+|||.+++.+...
T Consensus       107 ~-----~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  151 (219)
T 3dlc_A          107 I-----EDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFG  151 (219)
T ss_dssp             S-----CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred             C-----CcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEeccC
Confidence            1     2478999999753   3456789999999999999999976554

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.64  E-value=4.3e-15  Score=121.42  Aligned_cols=120  Identities=16%  Similarity=0.194  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029764            8 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   87 (188)
Q Consensus         8 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   87 (188)
                      .+.++..++...++.+|||+|||+|..+..+|..++..++|+++|+++++++.+++++++.|+. ++.++++|+.+....
T Consensus        93 ss~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~-nv~v~~~Da~~l~~~  171 (456)
T 3m4x_A           93 SAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS-NAIVTNHAPAELVPH  171 (456)
T ss_dssp             TTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS-SEEEECCCHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhhh
Confidence            4456666777778889999999999999999988765689999999999999999999999986 599999999876543


Q ss_pred             HhhcccCCCceeEEEEeCCcc-------------------------chHHHHHHHHhccCcCeEEEEecccc
Q 029764           88 LLKYSENEGSFDYAFVDADKD-------------------------NYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        88 ~~~~~~~~~~~D~i~id~~~~-------------------------~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      +      .++||.|++|.+..                         ....+++.+.++|||||.|+......
T Consensus       172 ~------~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~  237 (456)
T 3m4x_A          172 F------SGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF  237 (456)
T ss_dssp             H------TTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred             c------cccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence            3      47899999996421                         01267888899999999999866554

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.64  E-value=3.1e-15  Score=111.78  Aligned_cols=137  Identities=17%  Similarity=0.194  Sum_probs=99.6

Q ss_pred             HcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           18 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        18 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      ..++.+|||+||| +|..+..+++..  +.+|+++|+++++++.|++++...++  +++++++|+... ..+     ..+
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~-~~~-----~~~  122 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGII-KGV-----VEG  122 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSS-TTT-----CCS
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhh-hhc-----ccC
Confidence            4577899999999 999999999874  57999999999999999999999887  699999996322 111     137


Q ss_pred             ceeEEEEeCCc----------------------cchHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchH
Q 029764           97 SFDYAFVDADK----------------------DNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSR  154 (188)
Q Consensus        97 ~~D~i~id~~~----------------------~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~  154 (188)
                      +||+|+++.+.                      ..+..+++.+.++|+|||.+++.-...                   .
T Consensus       123 ~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-------------------~  183 (230)
T 3evz_A          123 TFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK-------------------E  183 (230)
T ss_dssp             CEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC-------------------H
T ss_pred             ceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc-------------------H
Confidence            89999987421                      113678999999999999998842111                   1


Q ss_pred             HHHHHHHHHhhcCCCeEEEEeecCCceEEE
Q 029764          155 QAILDLNRSLADDPRVQLSHVALGDGITIC  184 (188)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~lp~~~G~~~~  184 (188)
                      ....++.+.+.+. ++....+.+..|..+.
T Consensus       184 ~~~~~~~~~l~~~-g~~~~~~~~~~g~~~~  212 (230)
T 3evz_A          184 KLLNVIKERGIKL-GYSVKDIKFKVGTRWR  212 (230)
T ss_dssp             HHHHHHHHHHHHT-TCEEEEEEECCCC-CE
T ss_pred             hHHHHHHHHHHHc-CCceEEEEecCCCeEE
Confidence            1144555555444 5666666666665443

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.64  E-value=6.6e-15  Score=118.42  Aligned_cols=110  Identities=11%  Similarity=0.197  Sum_probs=90.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCC-cEEEEEcchHHHHHHHhhcccCCCc
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      .++++|||+|||+|..++.+|...  ..+|+++|+++++++.|++|++.+++.+ +++++++|+.+.++.+...   ..+
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~g--a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~---~~~  285 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGG--AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRH---HLT  285 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTT--BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHT---TCC
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHh---CCC
Confidence            577899999999999999999852  3489999999999999999999999875 7999999999877765432   358


Q ss_pred             eeEEEEeCCcc------------chHHHHHHHHhccCcCeEEEEeccc
Q 029764           98 FDYAFVDADKD------------NYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        98 ~D~i~id~~~~------------~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      ||+|++|.+..            .+..++..+.++|+|||.+++....
T Consensus       286 fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~  333 (385)
T 2b78_A          286 YDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA  333 (385)
T ss_dssp             EEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             ccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            99999985431            1344667778999999999987543

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.63  E-value=9.4e-16  Score=117.89  Aligned_cols=119  Identities=15%  Similarity=0.133  Sum_probs=96.8

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029764            5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   84 (188)
Q Consensus         5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   84 (188)
                      .+...+.+..+....++.+|||+|||+|..++.+|+..+ .++|+++|+++++++.|+++++.+++. ++.++++|+.+.
T Consensus       104 ~~~~~e~~~~~~~~~~~~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s~~av~~a~~n~~~n~l~-~~~~~~~d~~~~  181 (272)
T 3a27_A          104 QGNIEERKRMAFISNENEVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNPTAYHYLCENIKLNKLN-NVIPILADNRDV  181 (272)
T ss_dssp             GGGHHHHHHHHTSCCTTCEEEETTCTTTTTHHHHHHHTC-CSEEEEEECCHHHHHHHHHHHHHTTCS-SEEEEESCGGGC
T ss_pred             CCchHHHHHHHHhcCCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEECChHHc
Confidence            333444444444566778999999999999999999865 679999999999999999999998876 488999999765


Q ss_pred             HHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           85 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        85 ~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                       +.       .++||+|+++... ....++..+.+.|+|||++++.+...
T Consensus       182 -~~-------~~~~D~Vi~d~p~-~~~~~l~~~~~~LkpgG~l~~s~~~~  222 (272)
T 3a27_A          182 -EL-------KDVADRVIMGYVH-KTHKFLDKTFEFLKDRGVIHYHETVA  222 (272)
T ss_dssp             -CC-------TTCEEEEEECCCS-SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             -Cc-------cCCceEEEECCcc-cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence             32       3689999999754 56778899999999999999876553

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.63  E-value=4.7e-15  Score=114.70  Aligned_cols=115  Identities=19%  Similarity=0.276  Sum_probs=93.3

Q ss_pred             cHHHHHHHHHHHHH---cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch
Q 029764            5 APDAGQLMAMLLRL---VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   81 (188)
Q Consensus         5 ~~~~~~~l~~l~~~---~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   81 (188)
                      .+++..++..++..   .++.+|||+|||+|..++.++.. + +.+|+++|+++++++.|++++...++.++++++++|.
T Consensus       105 r~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~-~-~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~  182 (284)
T 1nv8_A          105 RPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-S-DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEF  182 (284)
T ss_dssp             CTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-S-SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESST
T ss_pred             ChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcc
Confidence            45666666665543   35679999999999999999998 5 8899999999999999999999999887899999999


Q ss_pred             HHHHHHHhhcccCCCce---eEEEEeCCcc----------------------chHHHHHHHH-hccCcCeEEEEe
Q 029764           82 LSVLDQLLKYSENEGSF---DYAFVDADKD----------------------NYCNYHERLM-KLLKVGGIAVYD  130 (188)
Q Consensus        82 ~~~~~~~~~~~~~~~~~---D~i~id~~~~----------------------~~~~~~~~~~-~~L~~gG~lv~~  130 (188)
                      .+.++         ++|   |+|+++.+..                      +...+++.+. +.|+|||++++.
T Consensus       183 ~~~~~---------~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e  248 (284)
T 1nv8_A          183 LEPFK---------EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME  248 (284)
T ss_dssp             TGGGG---------GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred             hhhcc---------cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence            76421         467   9999973211                      0126789999 999999999984

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.63  E-value=7.9e-15  Score=118.38  Aligned_cols=114  Identities=19%  Similarity=0.267  Sum_probs=94.6

Q ss_pred             HHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCC-CCcEEEEEcchHHHHHHHhhccc
Q 029764           15 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV-DHKINFIESEALSVLDQLLKYSE   93 (188)
Q Consensus        15 l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~   93 (188)
                      +....++.+|||+|||+|..++.++...  ..+|+++|+++++++.|++|++.+++ .++++++++|+.+.++.+...  
T Consensus       215 l~~~~~~~~VLDl~cG~G~~sl~la~~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~--  290 (396)
T 3c0k_A          215 TRRYVENKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDR--  290 (396)
T ss_dssp             HHHHCTTCEEEEESCTTCSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHT--
T ss_pred             HHHhhCCCeEEEeeccCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhc--
Confidence            3344678899999999999999999852  35999999999999999999999988 657999999999887665322  


Q ss_pred             CCCceeEEEEeCCc------------cchHHHHHHHHhccCcCeEEEEeccc
Q 029764           94 NEGSFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        94 ~~~~~D~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                       ..+||+|++|.+.            ..+..++..+.++|+|||++++.+..
T Consensus       291 -~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  341 (396)
T 3c0k_A          291 -GEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCS  341 (396)
T ss_dssp             -TCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             -CCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence             3689999999643            45678889999999999999886543

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.63  E-value=3e-14  Score=110.07  Aligned_cols=115  Identities=17%  Similarity=0.259  Sum_probs=91.0

Q ss_pred             HHHHHHHH--HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcC--C-CCcEEEEEcchHHH
Q 029764           10 QLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSV   84 (188)
Q Consensus        10 ~~l~~l~~--~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~-~~~~~~~~~d~~~~   84 (188)
                      +++..+..  ..++++|||+|||+|..+..+++..+ ..+++++|+++.+++.+++++...+  + .++++++.+|+.+.
T Consensus        66 e~l~~~~l~~~~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~  144 (283)
T 2i7c_A           66 EMMTHVPMTVSKEPKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF  144 (283)
T ss_dssp             HHHHHHHHTTSSSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH
T ss_pred             HHHHHHHHhcCCCCCeEEEEeCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHH
Confidence            44544332  34678999999999999999998654 6899999999999999999876532  2 36799999999887


Q ss_pred             HHHHhhcccCCCceeEEEEeCCc-----cch--HHHHHHHHhccCcCeEEEEec
Q 029764           85 LDQLLKYSENEGSFDYAFVDADK-----DNY--CNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        85 ~~~~~~~~~~~~~~D~i~id~~~-----~~~--~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      ++..      .++||+|++|...     ...  .++++.+.++|+|||++++..
T Consensus       145 l~~~------~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~  192 (283)
T 2i7c_A          145 LENV------TNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC  192 (283)
T ss_dssp             HHHC------CSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HHhC------CCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence            6543      4789999998631     111  689999999999999999874

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.63  E-value=9.2e-16  Score=118.46  Aligned_cols=113  Identities=18%  Similarity=0.279  Sum_probs=92.8

Q ss_pred             HHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhh
Q 029764           11 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK   90 (188)
Q Consensus        11 ~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   90 (188)
                      ++..+....++.+|||+|||+|..+..++..++.+.+++++|+++.+++.+++++...+.  +++++++|+.+. + +  
T Consensus        13 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~-~-~--   86 (284)
T 3gu3_A           13 LVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEI-E-L--   86 (284)
T ss_dssp             HHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCTTTC-C-C--
T ss_pred             HHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcchhhc-C-c--
Confidence            333344556788999999999999999999887558999999999999999999877653  799999998753 1 1  


Q ss_pred             cccCCCceeEEEEeCC---ccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           91 YSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        91 ~~~~~~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                          .++||+|++...   ..+...+++++.++|+|||++++.+..
T Consensus        87 ----~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           87 ----NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             ----SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             ----CCCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence                368999998753   345678999999999999999987765

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.63  E-value=1.4e-14  Score=118.03  Aligned_cols=121  Identities=18%  Similarity=0.213  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029764            6 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   85 (188)
Q Consensus         6 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   85 (188)
                      .....++..++...++.+|||+|||+|..+..++...+ +++|+++|+++.+++.+++++...++  +++++++|+.+..
T Consensus       232 d~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~~~~~l~~~~~~~~~~g~--~~~~~~~D~~~~~  308 (429)
T 1sqg_A          232 DASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKRLGM--KATVKQGDGRYPS  308 (429)
T ss_dssp             CHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESSTTTHHHHHHHHHHTTC--CCEEEECCTTCTH
T ss_pred             CHHHHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHHcCC--CeEEEeCchhhch
Confidence            44566666677777888999999999999999999886 58999999999999999999999886  3788999987654


Q ss_pred             HHHhhcccCCCceeEEEEeCCccc-------------------------hHHHHHHHHhccCcCeEEEEecccc
Q 029764           86 DQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        86 ~~~~~~~~~~~~~D~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      ..+     ..++||+|++|.+...                         ...+++.+.++|||||.+++....+
T Consensus       309 ~~~-----~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~  377 (429)
T 1sqg_A          309 QWC-----GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV  377 (429)
T ss_dssp             HHH-----TTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred             hhc-----ccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            333     1368999999853211                         1467888999999999999976554

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.63  E-value=2.8e-15  Score=117.57  Aligned_cols=120  Identities=22%  Similarity=0.256  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764            7 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   86 (188)
Q Consensus         7 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   86 (188)
                      ....++..++...++.+|||+|||+|..+..++..++..++|+++|+++.+++.++++++..++. +++++++|+.+...
T Consensus       105 ~~s~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~~~  183 (315)
T 1ixk_A          105 ASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHIGE  183 (315)
T ss_dssp             HHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGGGG
T ss_pred             HHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-eEEEEECChhhccc
Confidence            44556666667778889999999999999999998765689999999999999999999998876 59999999876422


Q ss_pred             HHhhcccCCCceeEEEEeCCccc-------------------------hHHHHHHHHhccCcCeEEEEecccc
Q 029764           87 QLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        87 ~~~~~~~~~~~~D~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                       .      .++||+|++|.+...                         ...+++.+.++|||||.+++.....
T Consensus       184 -~------~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~  249 (315)
T 1ixk_A          184 -L------NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL  249 (315)
T ss_dssp             -G------CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             -c------cccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence             1      468999999853110                         1478889999999999999976543

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.63  E-value=2.3e-15  Score=112.31  Aligned_cols=116  Identities=20%  Similarity=0.289  Sum_probs=89.2

Q ss_pred             HHHHHHHH-HHcCCCEEEEEcccchHHHHHHHhhCC----CCCEEEEEeCCchhHHHHHHHHHhcCC----CCcEEEEEc
Q 029764            9 GQLMAMLL-RLVNAKKTIEIGVFTGYSLLLTALTIP----EDGQITAIDVNRETYEIGLPIIKKAGV----DHKINFIES   79 (188)
Q Consensus         9 ~~~l~~l~-~~~~~~~vLeiG~g~G~~~~~la~~~~----~~~~v~~iD~~~~~~~~a~~~~~~~~~----~~~~~~~~~   79 (188)
                      ..++..+. ...++.+|||+|||+|+.+..+++...    +.++|+++|+++++++.|++++...++    .++++++.+
T Consensus        68 ~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~  147 (227)
T 2pbf_A           68 ALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHK  147 (227)
T ss_dssp             HHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEEC
T ss_pred             HHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEEC
Confidence            34444443 456678999999999999999999864    467999999999999999999988773    357999999


Q ss_pred             chHHHHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           80 EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        80 d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      |..+..+....   ..++||+|+++.....   +++.+.++|+|||.+++.
T Consensus       148 d~~~~~~~~~~---~~~~fD~I~~~~~~~~---~~~~~~~~LkpgG~lv~~  192 (227)
T 2pbf_A          148 NIYQVNEEEKK---ELGLFDAIHVGASASE---LPEILVDLLAENGKLIIP  192 (227)
T ss_dssp             CGGGCCHHHHH---HHCCEEEEEECSBBSS---CCHHHHHHEEEEEEEEEE
T ss_pred             ChHhcccccCc---cCCCcCEEEECCchHH---HHHHHHHhcCCCcEEEEE
Confidence            98764210000   0368999999875443   357788999999999986

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.62  E-value=4.1e-15  Score=114.67  Aligned_cols=103  Identities=17%  Similarity=0.191  Sum_probs=87.3

Q ss_pred             CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029764           21 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  100 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~  100 (188)
                      +.+|||+|||+|..+..++..   +.+++++|+++++++.+++++...++.++++++++|..+..+ +     ..++||+
T Consensus        69 ~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~-----~~~~fD~  139 (285)
T 4htf_A           69 KLRVLDAGGGEGQTAIKMAER---GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVAS-H-----LETPVDL  139 (285)
T ss_dssp             CCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGG-G-----CSSCEEE
T ss_pred             CCEEEEeCCcchHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhh-h-----cCCCceE
Confidence            569999999999999999986   579999999999999999999988887789999999876532 1     2579999


Q ss_pred             EEEeCC---ccchHHHHHHHHhccCcCeEEEEecc
Q 029764          101 AFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus       101 i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      |++...   ..+...+++.+.++|+|||.+++...
T Consensus       140 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  174 (285)
T 4htf_A          140 ILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFY  174 (285)
T ss_dssp             EEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            998753   34567899999999999999998764

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.62  E-value=1.1e-15  Score=118.57  Aligned_cols=114  Identities=15%  Similarity=0.268  Sum_probs=86.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCC----------------------------
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV----------------------------   70 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~----------------------------   70 (188)
                      .++++|||||||+|..+..++..++ ..+|+++|+++.+++.|++++...+.                            
T Consensus        45 ~~~~~VLDiGCG~G~~~~~la~~~~-~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (292)
T 3g07_A           45 FRGRDVLDLGCNVGHLTLSIACKWG-PSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKR  123 (292)
T ss_dssp             TTTSEEEEESCTTCHHHHHHHHHTC-CSEEEEEESCHHHHHHHHHTC---------------------------------
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence            3678999999999999999999986 67999999999999999998665432                            


Q ss_pred             -----------------------------CCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCc---c------chHH
Q 029764           71 -----------------------------DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---D------NYCN  112 (188)
Q Consensus        71 -----------------------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~---~------~~~~  112 (188)
                                                   ++++++.++|..+....+..  ...++||+|++....   +      ....
T Consensus       124 ~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~--~~~~~fD~I~~~~vl~~ihl~~~~~~~~~  201 (292)
T 3g07_A          124 SCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVE--AQTPEYDVVLCLSLTKWVHLNWGDEGLKR  201 (292)
T ss_dssp             ------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHT--TCCCCEEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhccCccccccccccccccccccccceEEecccccCcccccc--ccCCCcCEEEEChHHHHhhhcCCHHHHHH
Confidence                                         25799999987632211111  025799999987632   1      4567


Q ss_pred             HHHHHHhccCcCeEEEEeccccC
Q 029764          113 YHERLMKLLKVGGIAVYDNTLWG  135 (188)
Q Consensus       113 ~~~~~~~~L~~gG~lv~~~~~~~  135 (188)
                      +++.+.++|+|||++++....|.
T Consensus       202 ~l~~~~~~LkpGG~lil~~~~~~  224 (292)
T 3g07_A          202 MFRRIYRHLRPGGILVLEPQPWS  224 (292)
T ss_dssp             HHHHHHHHEEEEEEEEEECCCHH
T ss_pred             HHHHHHHHhCCCcEEEEecCCch
Confidence            89999999999999999766554

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.62  E-value=2.1e-15  Score=110.93  Aligned_cols=100  Identities=14%  Similarity=0.123  Sum_probs=86.8

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   99 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   99 (188)
                      ++.+|||+|||+|..+..++...+ +.+++++|+++++++.+++++...++.+ ++++++|+.+..        ..++||
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~--------~~~~~D  134 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRP-EAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEFP--------SEPPFD  134 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTSC--------CCSCEE
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEecchhhCC--------ccCCcC
Confidence            478999999999999999999876 7899999999999999999999888765 999999986542        136899


Q ss_pred             EEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764          100 YAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus       100 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      +|++.. ..+...+++.+.++|+|||.+++.
T Consensus       135 ~i~~~~-~~~~~~~l~~~~~~L~~gG~l~~~  164 (207)
T 1jsx_A          135 GVISRA-FASLNDMVSWCHHLPGEQGRFYAL  164 (207)
T ss_dssp             EEECSC-SSSHHHHHHHHTTSEEEEEEEEEE
T ss_pred             EEEEec-cCCHHHHHHHHHHhcCCCcEEEEE
Confidence            999764 456788999999999999999986

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.62  E-value=5.2e-15  Score=114.06  Aligned_cols=105  Identities=15%  Similarity=0.128  Sum_probs=89.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++.+|||+|||+|..++.+++..+ . +|+++|+++.+++.|+++++.+++.++++++++|+.+...        .++|
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~-~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~--------~~~f  193 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGK-A-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--------ENIA  193 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTC-C-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--------CSCE
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCC-C-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc--------cCCc
Confidence            4578999999999999999999754 2 8999999999999999999999988889999999976532        3789


Q ss_pred             eEEEEeCCccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           99 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      |+|+++... ....+++.+.++|+|||.+++.+...
T Consensus       194 D~Vi~~~p~-~~~~~l~~~~~~LkpgG~l~~~~~~~  228 (278)
T 2frn_A          194 DRILMGYVV-RTHEFIPKALSIAKDGAIIHYHNTVP  228 (278)
T ss_dssp             EEEEECCCS-SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             cEEEECCch-hHHHHHHHHHHHCCCCeEEEEEEeec
Confidence            999998653 44678899999999999999976553

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.62  E-value=6.6e-15  Score=118.81  Aligned_cols=109  Identities=23%  Similarity=0.335  Sum_probs=91.6

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   99 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   99 (188)
                      ++.+|||+|||+|..++.++.. . ..+|+++|+++++++.|+++++.+++.++++++++|+.+.++.+...   ..+||
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~-g-~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~---~~~fD  291 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIA-G-ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKK---GEKFD  291 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHT---TCCEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhh---CCCCC
Confidence            7789999999999999999986 2 45999999999999999999999988768999999998877654322   46899


Q ss_pred             EEEEeCCc------------cchHHHHHHHHhccCcCeEEEEeccc
Q 029764          100 YAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus       100 ~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      +|++|.+.            ..+..++..+.++|+|||.+++....
T Consensus       292 ~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  337 (396)
T 2as0_A          292 IVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS  337 (396)
T ss_dssp             EEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            99999643            34567888999999999988876543

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.62  E-value=3.2e-15  Score=114.43  Aligned_cols=119  Identities=16%  Similarity=0.287  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHH---cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029764            8 AGQLMAMLLRL---VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   84 (188)
Q Consensus         8 ~~~~l~~l~~~---~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   84 (188)
                      ..+++..++..   .++.+|||+|||+|..+..+++..  +.+++++|+++++++.+++++...++.++++++.+|..+.
T Consensus        46 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  123 (273)
T 3bus_A           46 TDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDL  123 (273)
T ss_dssp             HHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccC
Confidence            33444445443   466799999999999999999875  5799999999999999999999988888899999998653


Q ss_pred             HHHHhhcccCCCceeEEEEeC---CccchHHHHHHHHhccCcCeEEEEeccccC
Q 029764           85 LDQLLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLWG  135 (188)
Q Consensus        85 ~~~~~~~~~~~~~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  135 (188)
                       + +     ..++||+|++..   +..+...+++.+.++|+|||.+++.+....
T Consensus       124 -~-~-----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~  170 (273)
T 3bus_A          124 -P-F-----EDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLL  170 (273)
T ss_dssp             -C-S-----CTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEES
T ss_pred             -C-C-----CCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEeecc
Confidence             1 1     246899999874   334567899999999999999999876643

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.62  E-value=4.1e-15  Score=112.03  Aligned_cols=107  Identities=18%  Similarity=0.215  Sum_probs=83.8

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHh------cCCCCcEEEEEcchHHHHHHHhhc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK------AGVDHKINFIESEALSVLDQLLKY   91 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~------~~~~~~~~~~~~d~~~~~~~~~~~   91 (188)
                      ..+..+|||||||+|..+..+|...+ +..++++|+++.+++.|++++..      .++ .++.++++|+.+.++...  
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~-~nv~~~~~d~~~~l~~~~--  119 (235)
T 3ckk_A           44 AQAQVEFADIGCGYGGLLVELSPLFP-DTLILGLEIRVKVSDYVQDRIRALRAAPAGGF-QNIACLRSNAMKHLPNFF--  119 (235)
T ss_dssp             --CCEEEEEETCTTCHHHHHHGGGST-TSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC-TTEEEEECCTTTCHHHHC--
T ss_pred             cCCCCeEEEEccCCcHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC-CeEEEEECcHHHhhhhhC--
Confidence            34556899999999999999999876 78999999999999999988764      233 469999999977454332  


Q ss_pred             ccCCCceeEEEEeCCccc-----------hHHHHHHHHhccCcCeEEEEe
Q 029764           92 SENEGSFDYAFVDADKDN-----------YCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        92 ~~~~~~~D~i~id~~~~~-----------~~~~~~~~~~~L~~gG~lv~~  130 (188)
                        ..++||.|++......           ...+++.+.++|+|||.+++.
T Consensus       120 --~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~  167 (235)
T 3ckk_A          120 --YKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTI  167 (235)
T ss_dssp             --CTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             --CCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEE
Confidence              2478999988642111           147899999999999999874

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.61  E-value=2.7e-15  Score=113.00  Aligned_cols=112  Identities=11%  Similarity=0.142  Sum_probs=91.7

Q ss_pred             HHHHHHHc-CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhh
Q 029764           12 MAMLLRLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK   90 (188)
Q Consensus        12 l~~l~~~~-~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   90 (188)
                      |+.++... ++.+|+|||||+|+.++.+++..+ ..+|+++|+++.+++.|++|++.+++.+++++..+|..+.+..   
T Consensus        12 L~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~---   87 (244)
T 3gnl_A           12 LEKVASYITKNERIADIGSDHAYLPCFAVKNQT-ASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEK---   87 (244)
T ss_dssp             HHHHHTTCCSSEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG---
T ss_pred             HHHHHHhCCCCCEEEEECCccHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCc---
Confidence            44555544 446999999999999999999754 6789999999999999999999999988999999998875421   


Q ss_pred             cccCCCceeEEEEeC-CccchHHHHHHHHhccCcCeEEEEec
Q 029764           91 YSENEGSFDYAFVDA-DKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        91 ~~~~~~~~D~i~id~-~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                          ..+||+|++.+ ...-...+++...+.|++++.+|+.-
T Consensus        88 ----~~~~D~IviagmGg~lI~~IL~~~~~~L~~~~~lIlq~  125 (244)
T 3gnl_A           88 ----KDAIDTIVIAGMGGTLIRTILEEGAAKLAGVTKLILQP  125 (244)
T ss_dssp             ----GGCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEE
T ss_pred             ----cccccEEEEeCCchHHHHHHHHHHHHHhCCCCEEEEEc
Confidence                13599998754 33456778888889999999999874

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.61  E-value=6.2e-15  Score=114.51  Aligned_cols=109  Identities=15%  Similarity=0.104  Sum_probs=86.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc-CCCCcEEEEEcchHHHHHHHhh-cccCCC
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-GVDHKINFIESEALSVLDQLLK-YSENEG   96 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~-~~~~~~   96 (188)
                      .++.+|||+|||+|..+..++..+++..+++++|+++.+++.|++++... +...+++++++|+.+..  +.. .....+
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~~~~~  112 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFK--FLGADSVDKQ  112 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCG--GGCTTTTTSS
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCC--ccccccccCC
Confidence            46789999999999999999987634889999999999999999998886 44568999999986532  110 000026


Q ss_pred             ceeEEEEeCC--ccchHHHHHHHHhccCcCeEEEE
Q 029764           97 SFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        97 ~~D~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      +||+|++...  +-+...+++++.++|+|||.+++
T Consensus       113 ~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          113 KIDMITAVECAHWFDFEKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             CeeEEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEE
Confidence            8999998742  12678899999999999999988

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.61  E-value=3e-14  Score=113.87  Aligned_cols=153  Identities=16%  Similarity=0.188  Sum_probs=105.1

Q ss_pred             CCCEEEEEccc------chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhc
Q 029764           20 NAKKTIEIGVF------TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKY   91 (188)
Q Consensus        20 ~~~~vLeiG~g------~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~   91 (188)
                      ++.+|||||||      +|..++.+++.+.++++|+++|+++++.       .   ..++++++++|+.+.  ...+...
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~-------~---~~~rI~fv~GDa~dlpf~~~l~~~  285 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH-------V---DELRIRTIQGDQNDAEFLDRIARR  285 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG-------G---CBTTEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh-------h---cCCCcEEEEecccccchhhhhhcc
Confidence            67899999999      6777777776542378999999999973       1   135799999998663  2222211


Q ss_pred             ccCCCceeEEEEeCCc--cchHHHHHHHHhccCcCeEEEEeccccCcc--ccCCCCCCCCCcccchHHHHHHHHHHhhcC
Q 029764           92 SENEGSFDYAFVDADK--DNYCNYHERLMKLLKVGGIAVYDNTLWGGT--VAVPEEQVPDHFRGSSRQAILDLNRSLADD  167 (188)
Q Consensus        92 ~~~~~~~D~i~id~~~--~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (188)
                         .++||+|++++.+  .+....++++.++|||||++++.|....-.  ..... ......++ +...++.+.+.+...
T Consensus       286 ---d~sFDlVisdgsH~~~d~~~aL~el~rvLKPGGvlVi~Dl~tsy~p~f~G~~-~~~~~~~t-ii~~lk~l~D~l~~~  360 (419)
T 3sso_A          286 ---YGPFDIVIDDGSHINAHVRTSFAALFPHVRPGGLYVIEDMWTAYWPGFGGQA-DPQECSGT-SLGLLKSLIDAIQHQ  360 (419)
T ss_dssp             ---HCCEEEEEECSCCCHHHHHHHHHHHGGGEEEEEEEEEECGGGGGCTBTTCCS-STTCCTTS-HHHHHHHHHHHHTGG
T ss_pred             ---cCCccEEEECCcccchhHHHHHHHHHHhcCCCeEEEEEecccccCcccCCCc-cCCcchhH-HHHHHHHHHHHhccc
Confidence               3789999998644  456778999999999999999998872111  11111 00123344 777788887776642


Q ss_pred             ---------CCe---EEEEeecCCceEEEEEc
Q 029764          168 ---------PRV---QLSHVALGDGITICRRI  187 (188)
Q Consensus       168 ---------~~~---~~~~lp~~~G~~~~~~~  187 (188)
                               |.+   ...-+.+-+++.+..|.
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~h~y~~i~~~~kg  392 (419)
T 3sso_A          361 ELPSDPNRSPGYVDRNIVGLHVYHNVAFVEKG  392 (419)
T ss_dssp             GSCCCTTCCCCHHHHHEEEEEEETTEEEEEES
T ss_pred             ccCCCcCCCCCccccceeEEEecCcEEEEEec
Confidence                     122   14567788899998875

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.61  E-value=3e-15  Score=117.47  Aligned_cols=114  Identities=21%  Similarity=0.336  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764            7 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   86 (188)
Q Consensus         7 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   86 (188)
                      .....+...+...++.+|||+|||+|..+..+++..+..++|+++|+++++++.|+++++..++.+ ++++.+|..+..+
T Consensus        62 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~-v~~~~~d~~~~~~  140 (317)
T 1dl5_A           62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVCGDGYYGVP  140 (317)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGCCG
T ss_pred             HHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCC-eEEEECChhhccc
Confidence            444444445566678899999999999999999886535789999999999999999999888765 9999999876432


Q ss_pred             HHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           87 QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        87 ~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      .       .++||+|+++....+..   +.+.++|+|||.+++..
T Consensus       141 ~-------~~~fD~Iv~~~~~~~~~---~~~~~~LkpgG~lvi~~  175 (317)
T 1dl5_A          141 E-------FSPYDVIFVTVGVDEVP---ETWFTQLKEGGRVIVPI  175 (317)
T ss_dssp             G-------GCCEEEEEECSBBSCCC---HHHHHHEEEEEEEEEEB
T ss_pred             c-------CCCeEEEEEcCCHHHHH---HHHHHhcCCCcEEEEEE
Confidence            1       36899999986544432   56788999999999964

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.60  E-value=8.1e-15  Score=120.13  Aligned_cols=122  Identities=18%  Similarity=0.246  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764            7 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   86 (188)
Q Consensus         7 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   86 (188)
                      ....++..++...++.+|||+|||+|..+..++..++..++|+++|+++.+++.++++++..|+. +++++++|+.+...
T Consensus       246 ~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~  324 (450)
T 2yxl_A          246 EASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIK-IVKPLVKDARKAPE  324 (450)
T ss_dssp             HHHHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCTTCCSS
T ss_pred             chhHHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEEEcChhhcch
Confidence            44566666677778889999999999999999998863489999999999999999999998875 59999999865421


Q ss_pred             HHhhcccCCCceeEEEEeCCccc-------------------------hHHHHHHHHhccCcCeEEEEecccc
Q 029764           87 QLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        87 ~~~~~~~~~~~~D~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      .+     ..++||+|++|.+...                         ...+++.+.++|||||.+++.....
T Consensus       325 ~~-----~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~  392 (450)
T 2yxl_A          325 II-----GEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI  392 (450)
T ss_dssp             SS-----CSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred             hh-----ccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            11     1267999999853211                         1467899999999999999876554

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.60  E-value=1.2e-14  Score=117.94  Aligned_cols=115  Identities=14%  Similarity=0.165  Sum_probs=90.0

Q ss_pred             HHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHH-------HHHHHhcCCC-CcEEEEEcchHH---
Q 029764           15 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG-------LPIIKKAGVD-HKINFIESEALS---   83 (188)
Q Consensus        15 l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a-------~~~~~~~~~~-~~~~~~~~d~~~---   83 (188)
                      .+...++.+|||+|||+|..++.+|...+ ..+|+++|+++++++.|       ++++...++. .+++++++|...   
T Consensus       237 ~l~l~~g~~VLDLGCGsG~la~~LA~~~g-~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~  315 (433)
T 1u2z_A          237 QCQLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNN  315 (433)
T ss_dssp             HTTCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCH
T ss_pred             hcCCCCCCEEEEeCCCcCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcccccc
Confidence            33556778999999999999999998765 56899999999999998       8888888853 579999876432   


Q ss_pred             HHHHHhhcccCCCceeEEEEeC--CccchHHHHHHHHhccCcCeEEEEeccccCc
Q 029764           84 VLDQLLKYSENEGSFDYAFVDA--DKDNYCNYHERLMKLLKVGGIAVYDNTLWGG  136 (188)
Q Consensus        84 ~~~~~~~~~~~~~~~D~i~id~--~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  136 (188)
                      .+...      .++||+|++..  ...+....+..+.+.|+|||.+++.+.+.+.
T Consensus       316 ~~~~~------~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~d~f~p~  364 (433)
T 1u2z_A          316 RVAEL------IPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLRSL  364 (433)
T ss_dssp             HHHHH------GGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESSCSSCT
T ss_pred             ccccc------cCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEeeccCCc
Confidence            12111      26899999863  2355667788999999999999998876543

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.60  E-value=4.1e-14  Score=102.22  Aligned_cols=159  Identities=13%  Similarity=0.048  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHH-HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029764            7 DAGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   85 (188)
Q Consensus         7 ~~~~~l~~l~~-~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   85 (188)
                      ....+...... ..++.+|||+|||+|..++.++...| ..+++++|+|+.+++.++++++..|...++++  .|.....
T Consensus        35 ~ld~fY~~~~~~l~~~~~VLDlGCG~GplAl~l~~~~p-~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~  111 (200)
T 3fzg_A           35 TLNDFYTYVFGNIKHVSSILDFGCGFNPLALYQWNENE-KIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDV  111 (200)
T ss_dssp             GHHHHHHHHHHHSCCCSEEEEETCTTHHHHHHHHCSSC-CCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHH
T ss_pred             hHHHHHHHHHhhcCCCCeEEEecCCCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccC
Confidence            33444444333 36678999999999999999988776 67999999999999999999999998766776  4544332


Q ss_pred             HHHhhcccCCCceeEEEEeCCccc---hHHHHHHHHhccCcCeEEEEeccc-cCccccCCCCCCCCCcccchHHHHHHHH
Q 029764           86 DQLLKYSENEGSFDYAFVDADKDN---YCNYHERLMKLLKVGGIAVYDNTL-WGGTVAVPEEQVPDHFRGSSRQAILDLN  161 (188)
Q Consensus        86 ~~~~~~~~~~~~~D~i~id~~~~~---~~~~~~~~~~~L~~gG~lv~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~  161 (188)
                      +        .++||+|+.--.-+.   ....+..+.+.|+|||++|.-++- ..|.    ..  .....+     .+.|.
T Consensus       112 ~--------~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfISfptksl~Gr----~~--gm~~~Y-----~~~~~  172 (200)
T 3fzg_A          112 Y--------KGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVISFPIKSLSGK----EK--GMEENY-----QLWFE  172 (200)
T ss_dssp             T--------TSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEEEECCCCC------CT--TCCCCH-----HHHHH
T ss_pred             C--------CCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEEeChHHhcCC----Cc--chhhhH-----HHHHH
Confidence            1        478999987642222   223445788999999999876522 1121    10  111111     34444


Q ss_pred             HHhhcCCCeEEEEeecCCceEEEEEcC
Q 029764          162 RSLADDPRVQLSHVALGDGITICRRIF  188 (188)
Q Consensus       162 ~~~~~~~~~~~~~lp~~~G~~~~~~~~  188 (188)
                      +.+ .........+-+++-+....+++
T Consensus       173 ~~~-~~~~~~~~~~~~~nEl~y~~~~~  198 (200)
T 3fzg_A          173 SFT-KGWIKILDSKVIGNELVYITSGF  198 (200)
T ss_dssp             HHT-TTTSCEEEEEEETTEEEEEECCC
T ss_pred             Hhc-cCcceeeeeeeeCceEEEEEecc
Confidence            444 44556667777888888777654

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.60  E-value=4.1e-15  Score=110.01  Aligned_cols=115  Identities=26%  Similarity=0.307  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029764            6 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   85 (188)
Q Consensus         6 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   85 (188)
                      +.....+...+...++.+|||+|||+|..+..++....+..+++++|+++++++.+++++...++. +++++.+|.....
T Consensus        63 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~  141 (215)
T 2yxe_A           63 IHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYD-NVIVIVGDGTLGY  141 (215)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEESCGGGCC
T ss_pred             HHHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccCC
Confidence            444444544556677789999999999999999998743579999999999999999999888765 4999999985432


Q ss_pred             HHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           86 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        86 ~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      +.       .++||+|++.....+..   +.+.++|+|||.+++.-
T Consensus       142 ~~-------~~~fD~v~~~~~~~~~~---~~~~~~L~pgG~lv~~~  177 (215)
T 2yxe_A          142 EP-------LAPYDRIYTTAAGPKIP---EPLIRQLKDGGKLLMPV  177 (215)
T ss_dssp             GG-------GCCEEEEEESSBBSSCC---HHHHHTEEEEEEEEEEE
T ss_pred             CC-------CCCeeEEEECCchHHHH---HHHHHHcCCCcEEEEEE
Confidence            21       36899999986444332   57889999999999863

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.60  E-value=2.3e-15  Score=112.79  Aligned_cols=106  Identities=13%  Similarity=0.129  Sum_probs=85.6

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..++.+|||+|||+|+.+..+|....++++|+++|+++++++.++++.++.   +++..+.+|..+.... .   .....
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~---~ni~~V~~d~~~p~~~-~---~~~~~  147 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR---RNIFPILGDARFPEKY-R---HLVEG  147 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC---TTEEEEESCTTCGGGG-T---TTCCC
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh---cCeeEEEEeccCcccc-c---cccce
Confidence            567889999999999999999998866899999999999999999887654   3688888887543111 1   12478


Q ss_pred             eeEEEEeCC-ccchHHHHHHHHhccCcCeEEEEe
Q 029764           98 FDYAFVDAD-KDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        98 ~D~i~id~~-~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      +|+||.|.. +.+...++.++.+.|||||.+++.
T Consensus       148 vDvVf~d~~~~~~~~~~l~~~~r~LKpGG~lvI~  181 (233)
T 4df3_A          148 VDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMA  181 (233)
T ss_dssp             EEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEEeccCChhHHHHHHHHHHhccCCCEEEEE
Confidence            999999864 344567889999999999999885

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.60  E-value=4.1e-15  Score=115.27  Aligned_cols=109  Identities=13%  Similarity=0.199  Sum_probs=91.3

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      ...++.+|||+|||+|..+..+++..  +.+++++|+++.+++.+++++...++.++++++++|..+. + +     ..+
T Consensus        79 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~-----~~~  149 (297)
T 2o57_A           79 VLQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-P-C-----EDN  149 (297)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC-S-S-----CTT
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC-C-C-----CCC
Confidence            34567899999999999999999875  4699999999999999999999888888899999998653 1 1     247


Q ss_pred             ceeEEEEeCC---ccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           97 SFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        97 ~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      +||+|++...   ..+...+++++.++|||||.+++.+...
T Consensus       150 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  190 (297)
T 2o57_A          150 SYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMK  190 (297)
T ss_dssp             CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             CEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence            8999998742   3446789999999999999999987654

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.60  E-value=7.9e-15  Score=117.85  Aligned_cols=107  Identities=23%  Similarity=0.336  Sum_probs=91.0

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   99 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   99 (188)
                      ++.+|||+|||+|..++.++..   ..+|+++|+++++++.|+++++.+++.+ ++++++|+.+.++.+...   ..+||
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~~-~~~~~~d~~~~~~~~~~~---~~~fD  281 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGN-VRVLEANAFDLLRRLEKE---GERFD  281 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCHHHHHHHHHHT---TCCEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCC-ceEEECCHHHHHHHHHhc---CCCee
Confidence            6779999999999999999987   4699999999999999999999998876 999999999887665322   46899


Q ss_pred             EEEEeCCc------------cchHHHHHHHHhccCcCeEEEEeccc
Q 029764          100 YAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus       100 ~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      +|++|.+.            ..+..++..+.++|+|||.+++....
T Consensus       282 ~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  327 (382)
T 1wxx_A          282 LVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS  327 (382)
T ss_dssp             EEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            99999643            34567888899999999999986543

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.60  E-value=7.1e-15  Score=110.67  Aligned_cols=115  Identities=17%  Similarity=0.227  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029764            9 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   88 (188)
Q Consensus         9 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   88 (188)
                      ...+...+...++.+|||+|||+|..+..++...   .+++++|+++++++.+++++...++. +++++++|+.+. + +
T Consensus        10 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~-~-~   83 (239)
T 1xxl_A           10 LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESL-P-F   83 (239)
T ss_dssp             HHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBC-C-S
T ss_pred             cchHHHHhCcCCCCEEEEEccCcCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEecccccC-C-C
Confidence            3344445567788899999999999999999874   49999999999999999999887765 699999998543 1 1


Q ss_pred             hhcccCCCceeEEEEeCC---ccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           89 LKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        89 ~~~~~~~~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                           ..++||+|++...   ..+...+++++.++|+|||.+++.+...
T Consensus        84 -----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  127 (239)
T 1xxl_A           84 -----PDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYA  127 (239)
T ss_dssp             -----CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             -----CCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence                 2478999998742   3456789999999999999999976554

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.60  E-value=8e-15  Score=114.77  Aligned_cols=114  Identities=10%  Similarity=0.133  Sum_probs=93.5

Q ss_pred             HHHHHHHH---HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764           10 QLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   86 (188)
Q Consensus        10 ~~l~~l~~---~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   86 (188)
                      +.+..++.   ..++.+|||+|||+|..+..+++..  +.+++++|+++++++.+++++...++.++++++.+|..+.  
T Consensus        77 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--  152 (318)
T 2fk8_A           77 AKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF--  152 (318)
T ss_dssp             HHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC--
T ss_pred             HHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC--
Confidence            34444443   3466799999999999999999875  4699999999999999999999888878899999998543  


Q ss_pred             HHhhcccCCCceeEEEEeCC-----ccchHHHHHHHHhccCcCeEEEEeccccC
Q 029764           87 QLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLWG  135 (188)
Q Consensus        87 ~~~~~~~~~~~~D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  135 (188)
                              .++||+|++...     ..+...+++.+.++|+|||.+++.+....
T Consensus       153 --------~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  198 (318)
T 2fk8_A          153 --------AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSY  198 (318)
T ss_dssp             --------CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECC
T ss_pred             --------CCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccC
Confidence                    368999998742     24668899999999999999999876653

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.60  E-value=9.2e-15  Score=112.74  Aligned_cols=114  Identities=9%  Similarity=0.099  Sum_probs=92.7

Q ss_pred             HHHHHHHH---HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764           10 QLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   86 (188)
Q Consensus        10 ~~l~~l~~---~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   86 (188)
                      +.+..++.   ..++.+|||||||+|..+..+++..  +.+++++|+++++++.+++++...++.++++++.+|..+.  
T Consensus        51 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--  126 (287)
T 1kpg_A           51 AKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF--  126 (287)
T ss_dssp             HHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC--
T ss_pred             HHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhC--
Confidence            34444443   3456799999999999999999655  4599999999999999999999888877899999998532  


Q ss_pred             HHhhcccCCCceeEEEEeCCc-----cchHHHHHHHHhccCcCeEEEEeccccC
Q 029764           87 QLLKYSENEGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLWG  135 (188)
Q Consensus        87 ~~~~~~~~~~~~D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~~  135 (188)
                              .++||+|++....     .+...+++++.++|||||.+++.+....
T Consensus       127 --------~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  172 (287)
T 1kpg_A          127 --------DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGL  172 (287)
T ss_dssp             --------CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEEC
T ss_pred             --------CCCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence                    2789999987421     4567899999999999999999876653

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.60  E-value=3.3e-15  Score=114.57  Aligned_cols=107  Identities=26%  Similarity=0.345  Sum_probs=90.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++.+|||+|||+|..+..++...+ +.+++++|+++.+++.+++++...+.. +++++.+|..+..  +     ..++|
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~--~-----~~~~f  106 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILAKNNP-DAEITSIDISPESLEKARENTEKNGIK-NVKFLQANIFSLP--F-----EDSSF  106 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGCC--S-----CTTCE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEcccccCC--C-----CCCCe
Confidence            5678999999999999999999876 789999999999999999999888865 6999999987531  1     24789


Q ss_pred             eEEEEeC---CccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           99 DYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        99 D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      |+|++..   +..+...+++.+.++|+|||++++.+...
T Consensus       107 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  145 (276)
T 3mgg_A          107 DHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDH  145 (276)
T ss_dssp             EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECG
T ss_pred             eEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence            9999875   33456789999999999999999976544

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.60  E-value=3.3e-15  Score=114.93  Aligned_cols=113  Identities=20%  Similarity=0.280  Sum_probs=92.9

Q ss_pred             HHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029764           10 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   89 (188)
Q Consensus        10 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   89 (188)
                      ..+...+...++.+|||+|||+|..+..+++.+.+..+++++|+++++++.|+++++..++.++++++.+|..+.+    
T Consensus       102 ~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----  177 (277)
T 1o54_A          102 SFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGF----  177 (277)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCC----
T ss_pred             HHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcc----
Confidence            3344444566778999999999999999999854478999999999999999999999887678999999987642    


Q ss_pred             hcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764           90 KYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        90 ~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                          ..++||+|+++.  .....+++.+.++|+|||.+++...
T Consensus       178 ----~~~~~D~V~~~~--~~~~~~l~~~~~~L~pgG~l~~~~~  214 (277)
T 1o54_A          178 ----DEKDVDALFLDV--PDPWNYIDKCWEALKGGGRFATVCP  214 (277)
T ss_dssp             ----SCCSEEEEEECC--SCGGGTHHHHHHHEEEEEEEEEEES
T ss_pred             ----cCCccCEEEECC--cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence                136899999975  3445788999999999999998653

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.60  E-value=5.9e-15  Score=112.28  Aligned_cols=107  Identities=13%  Similarity=0.242  Sum_probs=87.7

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      ...++.+|||+|||+|..+..++...   .+++++|+++++++.+++++...++. ++.+..+|+.+. + +     ..+
T Consensus        34 ~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~l-~-~-----~~~  102 (260)
T 1vl5_A           34 ALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQM-P-F-----TDE  102 (260)
T ss_dssp             TCCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CC-C-S-----CTT
T ss_pred             CCCCCCEEEEEeCCCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEecHHhC-C-C-----CCC
Confidence            44577899999999999999999874   49999999999999999999887765 699999998653 1 1     247


Q ss_pred             ceeEEEEeC---CccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           97 SFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        97 ~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      +||+|++..   +..+...+++++.++|+|||.+++.+...
T Consensus       103 ~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~  143 (260)
T 1vl5_A          103 RFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSA  143 (260)
T ss_dssp             CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             CEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcCC
Confidence            899999874   33456789999999999999999965543

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.59  E-value=1.9e-15  Score=117.86  Aligned_cols=109  Identities=15%  Similarity=0.072  Sum_probs=89.0

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..++.+|||+|||+|..+..++....++.+++++|+++.+++.+++++...++.++++++++|+.+..  +      .++
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~------~~~  187 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLD--T------REG  187 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCC--C------CSC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCC--c------cCC
Confidence            46778999999999999999973333478999999999999999999998888888999999987641  1      378


Q ss_pred             eeEEEEeCCc------cchHHHHHHHHhccCcCeEEEEecccc
Q 029764           98 FDYAFVDADK------DNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        98 ~D~i~id~~~------~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      ||+|++....      .....+++.+.++|+|||.+++.+...
T Consensus       188 fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  230 (305)
T 3ocj_A          188 YDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTP  230 (305)
T ss_dssp             EEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCC
T ss_pred             eEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCC
Confidence            9999986522      222347899999999999999987553

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.59  E-value=3.4e-14  Score=117.05  Aligned_cols=120  Identities=14%  Similarity=0.211  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHc--CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029764            8 AGQLMAMLLRLV--NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   85 (188)
Q Consensus         8 ~~~~l~~l~~~~--~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   85 (188)
                      ...++..++...  ++.+|||+|||+|..+..+|..++..++|+++|+++++++.+++++++.|+. ++.++++|+.+..
T Consensus       103 ~s~l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~-nv~~~~~D~~~~~  181 (479)
T 2frx_A          103 SSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGIS-NVALTHFDGRVFG  181 (479)
T ss_dssp             HHHHHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCCSTTHH
T ss_pred             HHHHHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHhh
Confidence            344555556666  7889999999999999999998865689999999999999999999999876 5999999987653


Q ss_pred             HHHhhcccCCCceeEEEEeCCcc---------c----------------hHHHHHHHHhccCcCeEEEEecccc
Q 029764           86 DQLLKYSENEGSFDYAFVDADKD---------N----------------YCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        86 ~~~~~~~~~~~~~D~i~id~~~~---------~----------------~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      ...      .++||.|++|.+..         +                ...+++.+.++|||||.+++....+
T Consensus       182 ~~~------~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~  249 (479)
T 2frx_A          182 AAV------PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL  249 (479)
T ss_dssp             HHS------TTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             hhc------cccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence            322      46899999985321         0                2357888889999999999876654

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.59  E-value=9.1e-15  Score=109.62  Aligned_cols=104  Identities=12%  Similarity=0.106  Sum_probs=85.6

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   99 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   99 (188)
                      ++.+|||+|||+|..+..++..   +.+++++|+++.+++.+++++...+...+++++++|+.+..        ..++||
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~fD  134 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMASP---ERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR--------PTELFD  134 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCBT---TEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC--------CSSCEE
T ss_pred             CCCCEEEeCCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC--------CCCCee
Confidence            4569999999999999999873   67999999999999999999877655567999999987632        136899


Q ss_pred             EEEEeCC-----ccchHHHHHHHHhccCcCeEEEEecccc
Q 029764          100 YAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus       100 ~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      +|++...     ......+++.+.++|+|||.+++.+...
T Consensus       135 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  174 (235)
T 3lcc_A          135 LIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPI  174 (235)
T ss_dssp             EEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred             EEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecc
Confidence            9998642     2366789999999999999999865443

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.59  E-value=7.7e-16  Score=115.93  Aligned_cols=112  Identities=14%  Similarity=0.148  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029764            9 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   88 (188)
Q Consensus         9 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   88 (188)
                      ..++..+....++.+|||+|||+|..+..++..   +.+|+++|+++.+++.|++++...++.++++++++|+.+..+  
T Consensus        67 ~~l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--  141 (241)
T 3gdh_A           67 EHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALT---GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS--  141 (241)
T ss_dssp             HHHHHHHHHHSCCSEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGG--
T ss_pred             HHHHHHhhhccCCCEEEECccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcc--
Confidence            444445555558889999999999999999985   579999999999999999999999887789999999977642  


Q ss_pred             hhcccCCCceeEEEEeCCccc---hHHHHHHHHhccCcCeEEEEec
Q 029764           89 LKYSENEGSFDYAFVDADKDN---YCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        89 ~~~~~~~~~~D~i~id~~~~~---~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                            .++||+|+++.....   ....+..+.++|+|||.+++..
T Consensus       142 ------~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~~~  181 (241)
T 3gdh_A          142 ------FLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFRL  181 (241)
T ss_dssp             ------GCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHHHHH
T ss_pred             ------cCCCCEEEECCCcCCcchhhhHHHHHHhhcCCcceeHHHH
Confidence                  379999999854322   2224456678999999977653

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.59  E-value=2.2e-15  Score=117.76  Aligned_cols=109  Identities=13%  Similarity=0.242  Sum_probs=90.7

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..++.+|||+|||+|..+..+++..  +.+|+++|+++++++.|++++...++.++++++.+|+.+. + +     ..++
T Consensus       115 ~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~-----~~~~  185 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRGGSMVMAHRRF--GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDT-P-F-----DKGA  185 (312)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-C-C-----CTTC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcC-C-C-----CCCC
Confidence            4456799999999999999999874  5699999999999999999999999888899999998653 1 1     2479


Q ss_pred             eeEEEEeCC--ccchHHHHHHHHhccCcCeEEEEeccccC
Q 029764           98 FDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLWG  135 (188)
Q Consensus        98 ~D~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  135 (188)
                      ||+|++...  +-+...+++.+.++|+|||.+++.+....
T Consensus       186 fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  225 (312)
T 3vc1_A          186 VTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITGCWN  225 (312)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred             EeEEEECCchhhCCHHHHHHHHHHHcCCCcEEEEEEcccc
Confidence            999998642  22478899999999999999998765543

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.58  E-value=4.5e-15  Score=109.28  Aligned_cols=102  Identities=9%  Similarity=0.003  Sum_probs=77.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcC-----------CCCcEEEEEcchHHHHHH
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG-----------VDHKINFIESEALSVLDQ   87 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~-----------~~~~~~~~~~d~~~~~~~   87 (188)
                      .++.+|||+|||+|..+.++++.   +.+|+++|+++++++.|+++.....           ...+++++++|+.+....
T Consensus        21 ~~~~~vLD~GCG~G~~~~~la~~---g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~   97 (203)
T 1pjz_A           21 VPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR   97 (203)
T ss_dssp             CTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred             CCCCEEEEeCCCCcHhHHHHHHC---CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence            46789999999999999999986   5699999999999999998754210           124689999998764221


Q ss_pred             HhhcccCCCceeEEEEeCC-----ccchHHHHHHHHhccCcCeEEEE
Q 029764           88 LLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        88 ~~~~~~~~~~~D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      -      .++||+|+....     ......+++++.++|||||.+++
T Consensus        98 ~------~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l  138 (203)
T 1pjz_A           98 D------IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLL  138 (203)
T ss_dssp             H------HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEE
T ss_pred             c------CCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence            0      158999997532     12345688999999999998333

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.58  E-value=1.1e-14  Score=110.85  Aligned_cols=115  Identities=10%  Similarity=0.037  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHh----------c------CC
Q 029764            7 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK----------A------GV   70 (188)
Q Consensus         7 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~----------~------~~   70 (188)
                      ...+++..+....++.+|||+|||+|..+.+||+.   +.+|++||+++.+++.|++....          .      ..
T Consensus        55 ~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~  131 (252)
T 2gb4_A           55 LLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADR---GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSS  131 (252)
T ss_dssp             HHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEET
T ss_pred             HHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccC
Confidence            33444444333346789999999999999999985   66999999999999999876431          0      01


Q ss_pred             CCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeC-----CccchHHHHHHHHhccCcCeEEEEe
Q 029764           71 DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        71 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ..+++++++|+.+....      ..++||+|+...     +......+++.+.++|||||.+++.
T Consensus       132 ~~~i~~~~~D~~~l~~~------~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~  190 (252)
T 2gb4_A          132 SGSISLYCCSIFDLPRA------NIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVA  190 (252)
T ss_dssp             TSSEEEEESCTTTGGGG------CCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CCceEEEECccccCCcc------cCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            24799999998764221      127899999653     2234567899999999999998644

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.58  E-value=7.7e-14  Score=119.69  Aligned_cols=157  Identities=10%  Similarity=0.117  Sum_probs=109.7

Q ss_pred             HHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc------CCCCcEEEEEcchHHHHH
Q 029764           13 AMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA------GVDHKINFIESEALSVLD   86 (188)
Q Consensus        13 ~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~------~~~~~~~~~~~d~~~~~~   86 (188)
                      ...+...++.+|||+|||+|..+..+++..++..+|+++|+++.+++.|++++...      ++ .+++++++|+.+...
T Consensus       714 LelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl-~nVefiqGDa~dLp~  792 (950)
T 3htx_A          714 LKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNV-KSATLYDGSILEFDS  792 (950)
T ss_dssp             HHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSC-SEEEEEESCTTSCCT
T ss_pred             HHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCC-CceEEEECchHhCCc
Confidence            33444557889999999999999999987643579999999999999999977643      33 479999999876321


Q ss_pred             HHhhcccCCCceeEEEEeCCccc-----hHHHHHHHHhccCcCeEEEEecccc------Ccc----------ccCC---C
Q 029764           87 QLLKYSENEGSFDYAFVDADKDN-----YCNYHERLMKLLKVGGIAVYDNTLW------GGT----------VAVP---E  142 (188)
Q Consensus        87 ~~~~~~~~~~~~D~i~id~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~~------~g~----------~~~~---~  142 (188)
                             ..++||+|++.....+     ...+++.+.++|+|| .+++.....      .+.          ...+   .
T Consensus       793 -------~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~eyN~lF~~Lnp~tr~~dPd~~~~~~fR  864 (950)
T 3htx_A          793 -------RLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEFNTILQRSTPETQEENNSEPQLPKFR  864 (950)
T ss_dssp             -------TSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGGHHHHTCC------------CCSSCS
T ss_pred             -------ccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchhhhhhhhccccccccccccccccccc
Confidence                   2478999998753322     235789999999999 666654332      111          0000   0


Q ss_pred             CCCCCCcccchHHHHHHHHHHhhcCCCeEEEEeecCCc
Q 029764          143 EQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG  180 (188)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~G  180 (188)
                      .......+  ....++.+.+.+..+.+|.....++|+|
T Consensus       865 h~DHrFEW--TReEFr~Wae~LAer~GYsVefvGVGDg  900 (950)
T 3htx_A          865 NHDHKFEW--TREQFNQWASKLGKRHNYSVEFSGVGGS  900 (950)
T ss_dssp             CSSCSCCB--CHHHHHHHHHHHHHHTTEEEEEEEESSC
T ss_pred             ccCcceee--cHHHHHHHHHHHHHhcCcEEEEEccCCC
Confidence            01111122  3445666667788888999999999987

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.58  E-value=7.2e-15  Score=111.23  Aligned_cols=105  Identities=16%  Similarity=0.219  Sum_probs=85.2

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc--------CCCCcEEEEEcchHHHHHHHhhc
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--------GVDHKINFIESEALSVLDQLLKY   91 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--------~~~~~~~~~~~d~~~~~~~~~~~   91 (188)
                      ++.+|||||||+|..+..++...+ +.+++++|+++.+++.+++++...        ++. +++++.+|+.+.++...  
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-nv~~~~~D~~~~l~~~~--  124 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFP-EDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQ-NINVLRGNAMKFLPNFF--  124 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHST-TSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTT-TEEEEECCTTSCGGGTS--
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCC-CCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCC-cEEEEeccHHHHHHHhc--
Confidence            566899999999999999999876 789999999999999999998776        654 69999999976544322  


Q ss_pred             ccCCCceeEEEEeCCccc-----------hHHHHHHHHhccCcCeEEEEe
Q 029764           92 SENEGSFDYAFVDADKDN-----------YCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        92 ~~~~~~~D~i~id~~~~~-----------~~~~~~~~~~~L~~gG~lv~~  130 (188)
                        +.+++|.|++......           ...+++.+.++|+|||.+++.
T Consensus       125 --~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~  172 (246)
T 2vdv_E          125 --EKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI  172 (246)
T ss_dssp             --CTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             --cccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence              2478999987642221           147899999999999999883

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.58  E-value=5.9e-15  Score=110.03  Aligned_cols=114  Identities=18%  Similarity=0.253  Sum_probs=88.3

Q ss_pred             HHHHHHHHH-HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCC----CCcEEEEEcchH
Q 029764            8 AGQLMAMLL-RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV----DHKINFIESEAL   82 (188)
Q Consensus         8 ~~~~l~~l~-~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~----~~~~~~~~~d~~   82 (188)
                      ...++..+. ...++.+|||+|||+|..+..+++...+..+|+++|+++.+++.+++++...+.    .++++++.+|..
T Consensus        64 ~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~  143 (226)
T 1i1n_A           64 HAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGR  143 (226)
T ss_dssp             HHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGG
T ss_pred             HHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcc
Confidence            334444443 255678999999999999999998764357999999999999999999888664    357999999986


Q ss_pred             HHHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           83 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        83 ~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      +....       .++||+|+++.....   +++.+.++|+|||.+++..
T Consensus       144 ~~~~~-------~~~fD~i~~~~~~~~---~~~~~~~~LkpgG~lv~~~  182 (226)
T 1i1n_A          144 MGYAE-------EAPYDAIHVGAAAPV---VPQALIDQLKPGGRLILPV  182 (226)
T ss_dssp             GCCGG-------GCCEEEEEECSBBSS---CCHHHHHTEEEEEEEEEEE
T ss_pred             cCccc-------CCCcCEEEECCchHH---HHHHHHHhcCCCcEEEEEE
Confidence            43211       368999999865433   3567889999999999863

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.58  E-value=3e-15  Score=112.09  Aligned_cols=105  Identities=17%  Similarity=0.224  Sum_probs=85.5

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..++.+|||+|||+|..+..++...+ +.+++++|+++.+++.+++++...+   +++++++|..+..        ..++
T Consensus        42 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~--------~~~~  109 (234)
T 3dtn_A           42 DTENPDILDLGAGTGLLSAFLMEKYP-EATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYD--------FEEK  109 (234)
T ss_dssp             SCSSCEEEEETCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCC--------CCSC
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccC--------CCCC
Confidence            34567999999999999999999886 7899999999999999999876544   7999999986541        1378


Q ss_pred             eeEEEEeCCccc-----hHHHHHHHHhccCcCeEEEEecccc
Q 029764           98 FDYAFVDADKDN-----YCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        98 ~D~i~id~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      ||+|++.....+     ...+++++.++|+|||.+++.+...
T Consensus       110 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  151 (234)
T 3dtn_A          110 YDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVH  151 (234)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             ceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecC
Confidence            999998853221     2358999999999999999977553

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.58  E-value=7e-15  Score=116.15  Aligned_cols=116  Identities=14%  Similarity=0.195  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcC----------CCCcEEEEE
Q 029764            9 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG----------VDHKINFIE   78 (188)
Q Consensus         9 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~----------~~~~~~~~~   78 (188)
                      ...+...+...++.+|||+|||+|..+..+++...+..+++++|+++++++.|++++...+          ..++++++.
T Consensus        94 ~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~  173 (336)
T 2b25_A           94 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH  173 (336)
T ss_dssp             HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence            3334444467788899999999999999999975436899999999999999999988632          235799999


Q ss_pred             cchHHHHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           79 SEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        79 ~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      +|+.+....+.     .++||+|+++...  ...+++.+.++|+|||.+++..
T Consensus       174 ~d~~~~~~~~~-----~~~fD~V~~~~~~--~~~~l~~~~~~LkpgG~lv~~~  219 (336)
T 2b25_A          174 KDISGATEDIK-----SLTFDAVALDMLN--PHVTLPVFYPHLKHGGVCAVYV  219 (336)
T ss_dssp             SCTTCCC------------EEEEEECSSS--TTTTHHHHGGGEEEEEEEEEEE
T ss_pred             CChHHcccccC-----CCCeeEEEECCCC--HHHHHHHHHHhcCCCcEEEEEe
Confidence            99876432221     3579999997532  3347899999999999998743

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.58  E-value=2.8e-14  Score=111.35  Aligned_cols=107  Identities=15%  Similarity=0.198  Sum_probs=85.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHh---cCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK---AGVDHKINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~---~~~~~~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      .++++|||||||+|..+..+++..+ ..+++++|+++.+++.+++++..   ....++++++.+|+.+.....     ..
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~-----~~  167 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGT-VEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQT-----PD  167 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSS-----CT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhc-----cC
Confidence            5678999999999999999998644 67999999999999999998742   122367999999998765421     14


Q ss_pred             CceeEEEEeCCccc-------hHHHHHHHHhccCcCeEEEEec
Q 029764           96 GSFDYAFVDADKDN-------YCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        96 ~~~D~i~id~~~~~-------~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      ++||+|++|.....       ..++++.+.++|+|||++++..
T Consensus       168 ~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  210 (304)
T 3bwc_A          168 NTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQG  210 (304)
T ss_dssp             TCEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            78999999863221       1578999999999999999863

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.58  E-value=4.5e-14  Score=121.26  Aligned_cols=113  Identities=21%  Similarity=0.356  Sum_probs=94.2

Q ss_pred             HHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCC-CcEEEEEcchHHHHHHHhhc
Q 029764           13 AMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKY   91 (188)
Q Consensus        13 ~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~   91 (188)
                      ..+....++++|||+|||+|..++.++..-  ..+|+++|+++.+++.+++|++.+++. ++++++++|+.+.++..   
T Consensus       532 ~~l~~~~~g~~VLDlg~GtG~~sl~aa~~g--a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~---  606 (703)
T 3v97_A          532 RMLGQMSKGKDFLNLFSYTGSATVHAGLGG--ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREA---  606 (703)
T ss_dssp             HHHHHHCTTCEEEEESCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHC---
T ss_pred             HHHHHhcCCCcEEEeeechhHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhc---
Confidence            334456688999999999999999998742  357999999999999999999999987 68999999999877653   


Q ss_pred             ccCCCceeEEEEeCCc--------------cchHHHHHHHHhccCcCeEEEEeccc
Q 029764           92 SENEGSFDYAFVDADK--------------DNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        92 ~~~~~~~D~i~id~~~--------------~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                         .++||+|++|.+.              ..+..++..+.++|+|||.++++...
T Consensus       607 ---~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          607 ---NEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             ---CCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             ---CCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence               4789999998642              23556788889999999999987655

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.58  E-value=4.3e-14  Score=113.32  Aligned_cols=116  Identities=12%  Similarity=0.040  Sum_probs=89.5

Q ss_pred             HHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHH-------HhcCCC-CcEEEEEcchHHHHH
Q 029764           15 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII-------KKAGVD-HKINFIESEALSVLD   86 (188)
Q Consensus        15 l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~-------~~~~~~-~~~~~~~~d~~~~~~   86 (188)
                      .+...++.+|||+|||+|..++.+|...+ ..++++||+++.+++.|+++.       +..++. .+++++++|+.+.--
T Consensus       168 ~l~l~~gd~VLDLGCGtG~l~l~lA~~~g-~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~  246 (438)
T 3uwp_A          168 EIKMTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEW  246 (438)
T ss_dssp             HHCCCTTCEEEEESCTTSHHHHHHHHHCC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHH
T ss_pred             hcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCcc
Confidence            33566778999999999999999998764 457999999999999998764       344653 689999999876421


Q ss_pred             HHhhcccCCCceeEEEEeCC--ccchHHHHHHHHhccCcCeEEEEeccccCc
Q 029764           87 QLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLWGG  136 (188)
Q Consensus        87 ~~~~~~~~~~~~D~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  136 (188)
                      .  +.   ...+|+||+...  ..+....+.++.+.|||||.+|+.+.+.+.
T Consensus       247 ~--d~---~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVssE~f~p~  293 (438)
T 3uwp_A          247 R--ER---IANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPL  293 (438)
T ss_dssp             H--HH---HHTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEESSCSSCT
T ss_pred             c--cc---cCCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEeecccCC
Confidence            1  00   147999998642  345567778889999999999998877644

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.57  E-value=3.9e-15  Score=110.18  Aligned_cols=109  Identities=21%  Similarity=0.228  Sum_probs=85.8

Q ss_pred             HHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029764           10 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   89 (188)
Q Consensus        10 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   89 (188)
                      +++..+....++.+|||+|||+|..+..++..   ..+++++|+++++++.+++++...+   +++++++|+.+..    
T Consensus        41 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~----  110 (216)
T 3ofk_A           41 QLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPH---CKRLTVIDVMPRAIGRACQRTKRWS---HISWAATDILQFS----  110 (216)
T ss_dssp             HHHHHHTTTSSEEEEEEECCTTSHHHHHHGGG---EEEEEEEESCHHHHHHHHHHTTTCS---SEEEEECCTTTCC----
T ss_pred             HHHHHHcccCCCCcEEEEcCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHhcccCC---CeEEEEcchhhCC----
Confidence            34444444556679999999999999999986   4599999999999999999876543   7999999987642    


Q ss_pred             hcccCCCceeEEEEeCCc------cchHHHHHHHHhccCcCeEEEEecc
Q 029764           90 KYSENEGSFDYAFVDADK------DNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        90 ~~~~~~~~~D~i~id~~~------~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                          ..++||+|++....      .....+++.+.++|+|||.+++...
T Consensus       111 ----~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  155 (216)
T 3ofk_A          111 ----TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA  155 (216)
T ss_dssp             ----CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ----CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence                14789999987422      2235679999999999999998653

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.57  E-value=2.6e-14  Score=115.03  Aligned_cols=103  Identities=18%  Similarity=0.251  Sum_probs=85.1

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   99 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   99 (188)
                      ++++|||+|||+|..++.+|..   +.+|+++|+++.+++.+++|++.+++..  .+.++|+.+.++.+      .+.||
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~---ga~V~avDis~~al~~a~~n~~~ng~~~--~~~~~D~~~~l~~~------~~~fD  282 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARK---GAYALAVDKDLEALGVLDQAALRLGLRV--DIRHGEALPTLRGL------EGPFH  282 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCCC--EEEESCHHHHHHTC------CCCEE
T ss_pred             CCCeEEEcccchhHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHhCCCC--cEEEccHHHHHHHh------cCCCC
Confidence            3789999999999999999986   4569999999999999999999998864  45699998877654      24499


Q ss_pred             EEEEeCCc------------cchHHHHHHHHhccCcCeEEEEeccc
Q 029764          100 YAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus       100 ~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      +|++|.+.            ..+..++..+.++|+|||.+++....
T Consensus       283 ~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s  328 (393)
T 4dmg_A          283 HVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS  328 (393)
T ss_dssp             EEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            99999653            24567888889999999999865443

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.57  E-value=5.5e-15  Score=111.10  Aligned_cols=109  Identities=16%  Similarity=0.161  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029764            9 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   88 (188)
Q Consensus         9 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   88 (188)
                      ..++..+....++.+|||||||+|..+..++...   .+++++|+++++++.|++++..     +++++++|+.+..   
T Consensus        31 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~~---   99 (250)
T 2p7i_A           31 PFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRLKD-----GITYIHSRFEDAQ---   99 (250)
T ss_dssp             HHHHHHHGGGCCSSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGCC---
T ss_pred             HHHHHHHHhhcCCCcEEEECCCCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHcC---
Confidence            3445555556678899999999999999999863   4899999999999999987532     6999999987651   


Q ss_pred             hhcccCCCceeEEEEeCC---ccchHHHHHHHH-hccCcCeEEEEeccc
Q 029764           89 LKYSENEGSFDYAFVDAD---KDNYCNYHERLM-KLLKVGGIAVYDNTL  133 (188)
Q Consensus        89 ~~~~~~~~~~D~i~id~~---~~~~~~~~~~~~-~~L~~gG~lv~~~~~  133 (188)
                           ..++||+|++...   ..+...+++++. ++|+|||.+++....
T Consensus       100 -----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~  143 (250)
T 2p7i_A          100 -----LPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPN  143 (250)
T ss_dssp             -----CSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             -----cCCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence                 1478999998753   345678999999 999999999997644

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.57  E-value=5.6e-15  Score=118.39  Aligned_cols=104  Identities=13%  Similarity=0.091  Sum_probs=86.1

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCC--cEEEEEcchHHHHHHHhhcccCC
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH--KINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      ..++.+|||+|||+|..++.+++..| +.+|+++|+++.+++.+++++..+++.+  +++++.+|..+.+        ..
T Consensus       220 ~~~~~~VLDlGcG~G~~s~~la~~~p-~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~--------~~  290 (375)
T 4dcm_A          220 ENLEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV--------EP  290 (375)
T ss_dssp             CSCCSEEEEETCTTCHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTC--------CT
T ss_pred             ccCCCeEEEEeCcchHHHHHHHHHCC-CCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccC--------CC
Confidence            34457999999999999999999876 7899999999999999999999888653  5888999987632        14


Q ss_pred             CceeEEEEeCCc--------cchHHHHHHHHhccCcCeEEEEe
Q 029764           96 GSFDYAFVDADK--------DNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        96 ~~~D~i~id~~~--------~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ++||+|+++...        .....+++.+.+.|+|||.+++.
T Consensus       291 ~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv  333 (375)
T 4dcm_A          291 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV  333 (375)
T ss_dssp             TCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence            689999998532        12346789999999999998884

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.57  E-value=5.6e-15  Score=113.56  Aligned_cols=106  Identities=15%  Similarity=0.137  Sum_probs=89.9

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      ...++.+|||+|||+|..++.+|+..  ..+|+++|++|.+++.+++|++.+++.++++++++|+.++..        .+
T Consensus       122 ~~~~g~~VlD~~aG~G~~~i~~a~~g--~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~--------~~  191 (278)
T 3k6r_A          122 VAKPDELVVDMFAGIGHLSLPIAVYG--KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--------EN  191 (278)
T ss_dssp             HCCTTCEEEETTCTTTTTTHHHHHHT--CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--------CS
T ss_pred             hcCCCCEEEEecCcCcHHHHHHHHhc--CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc--------cc
Confidence            35578899999999999999999863  469999999999999999999999999999999999976532        47


Q ss_pred             ceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           97 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        97 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      .||.|+++..+. ..++++.+.++|++||+|.+++..
T Consensus       192 ~~D~Vi~~~p~~-~~~~l~~a~~~lk~gG~ih~~~~~  227 (278)
T 3k6r_A          192 IADRILMGYVVR-THEFIPKALSIAKDGAIIHYHNTV  227 (278)
T ss_dssp             CEEEEEECCCSS-GGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCCEEEECCCCc-HHHHHHHHHHHcCCCCEEEEEeee
Confidence            899999986543 356788899999999999876543

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.57  E-value=8.7e-15  Score=111.02  Aligned_cols=111  Identities=18%  Similarity=0.163  Sum_probs=90.2

Q ss_pred             HHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc-CCCCcEEEEEcchHHHHHHHh
Q 029764           11 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-GVDHKINFIESEALSVLDQLL   89 (188)
Q Consensus        11 ~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~~~~~~~d~~~~~~~~~   89 (188)
                      .+...+...++.+|||+|||+|..+..+++.+.+..+++++|+++++++.++++++.. + .++++++.+|+.+.  .+ 
T Consensus        87 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~d~~~~--~~-  162 (258)
T 2pwy_A           87 AMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLGKLEEA--EL-  162 (258)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEESCGGGC--CC-
T ss_pred             HHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEECchhhc--CC-
Confidence            3333445667789999999999999999998544789999999999999999999887 7 56799999998654  11 


Q ss_pred             hcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           90 KYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        90 ~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                          ..++||+|+++.  .+...+++.+.++|+|||.+++..
T Consensus       163 ----~~~~~D~v~~~~--~~~~~~l~~~~~~L~~gG~l~~~~  198 (258)
T 2pwy_A          163 ----EEAAYDGVALDL--MEPWKVLEKAALALKPDRFLVAYL  198 (258)
T ss_dssp             ----CTTCEEEEEEES--SCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             ----CCCCcCEEEECC--cCHHHHHHHHHHhCCCCCEEEEEe
Confidence                136899999975  344578899999999999999864

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.57  E-value=9.1e-14  Score=101.78  Aligned_cols=110  Identities=12%  Similarity=-0.014  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029764            8 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   87 (188)
Q Consensus         8 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   87 (188)
                      ...++..+.... +.+|||+|||+|..+..++..   +.+++++|+++++++.++++.      .+++++++|+.+. + 
T Consensus        30 ~~~~l~~~~~~~-~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~-~-   97 (203)
T 3h2b_A           30 DRVLIEPWATGV-DGVILDVGSGTGRWTGHLASL---GHQIEGLEPATRLVELARQTH------PSVTFHHGTITDL-S-   97 (203)
T ss_dssp             THHHHHHHHHHC-CSCEEEETCTTCHHHHHHHHT---TCCEEEECCCHHHHHHHHHHC------TTSEEECCCGGGG-G-
T ss_pred             HHHHHHHHhccC-CCeEEEecCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHhC------CCCeEEeCccccc-c-
Confidence            344566555544 779999999999999999986   569999999999999999872      3689999998764 1 


Q ss_pred             HhhcccCCCceeEEEEeCC-----ccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           88 LLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        88 ~~~~~~~~~~~D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      +     ..++||+|++...     ..+...+++.+.++|+|||.+++.....
T Consensus        98 ~-----~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~  144 (203)
T 3h2b_A           98 D-----SPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSG  144 (203)
T ss_dssp             G-----SCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECC
T ss_pred             c-----CCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence            1     2479999998642     2366889999999999999999976543

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.57  E-value=1.7e-14  Score=106.85  Aligned_cols=104  Identities=16%  Similarity=0.159  Sum_probs=79.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++.+|||+|||+|..+..++...+ .++|+++|+++++++.+.+..+..   +++.++.+|+.+..... .   ..++|
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~~~~~-~---~~~~f  127 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYS-G---IVEKV  127 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTT-T---TCCCE
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCchhhc-c---cccce
Confidence            4667999999999999999999876 689999999999887766655543   36888888875421000 0   13689


Q ss_pred             eEEEEeCCccc-hHHHHHHHHhccCcCeEEEEe
Q 029764           99 DYAFVDADKDN-YCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        99 D~i~id~~~~~-~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      |+|+++..... ...+++++.++|||||.+++.
T Consensus       128 D~V~~~~~~~~~~~~~l~~~~r~LkpgG~l~i~  160 (210)
T 1nt2_A          128 DLIYQDIAQKNQIEILKANAEFFLKEKGEVVIM  160 (210)
T ss_dssp             EEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEeccChhHHHHHHHHHHHHhCCCCEEEEE
Confidence            99999864333 334589999999999999986

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.57  E-value=7.1e-15  Score=110.69  Aligned_cols=117  Identities=13%  Similarity=0.177  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHc----CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029764            8 AGQLMAMLLRLV----NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   83 (188)
Q Consensus         8 ~~~~l~~l~~~~----~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   83 (188)
                      ...++..++...    ++.+|||+|||+|..+..++...  ..+++++|+++.+++.+++++...+ ..+++++.+|+.+
T Consensus        63 ~~~~~~~l~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~d~~~  139 (241)
T 2ex4_A           63 SRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEG-KRVRNYFCCGLQD  139 (241)
T ss_dssp             HHHHHHGGGC----CCCCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGG-GGEEEEEECCGGG
T ss_pred             HHHHHHHHHHhcccCCCCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcC-CceEEEEEcChhh
Confidence            445555554432    47899999999999999988764  4699999999999999999987654 3468899999765


Q ss_pred             HHHHHhhcccCCCceeEEEEeCCcc-----chHHHHHHHHhccCcCeEEEEecccc
Q 029764           84 VLDQLLKYSENEGSFDYAFVDADKD-----NYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        84 ~~~~~~~~~~~~~~~D~i~id~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      ..  +     ..++||+|++.....     ....+++.+.++|+|||.+++.+...
T Consensus       140 ~~--~-----~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  188 (241)
T 2ex4_A          140 FT--P-----EPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMA  188 (241)
T ss_dssp             CC--C-----CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             cC--C-----CCCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccC
Confidence            31  1     135899999985322     24478999999999999999966543

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.57  E-value=3.8e-14  Score=109.31  Aligned_cols=110  Identities=13%  Similarity=0.187  Sum_probs=88.8

Q ss_pred             HHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029764           10 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   89 (188)
Q Consensus        10 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   89 (188)
                      .++..+ ...++.+|||+|||+|..+..++..   +.+|+++|+++.+++.+++++...++  +++++++|..+...   
T Consensus       111 ~~~~~~-~~~~~~~vLD~GcG~G~~~~~l~~~---g~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~---  181 (286)
T 3m70_A          111 DVVDAA-KIISPCKVLDLGCGQGRNSLYLSLL---GYDVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANI---  181 (286)
T ss_dssp             HHHHHH-HHSCSCEEEEESCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCC---
T ss_pred             HHHHHh-hccCCCcEEEECCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccc---
Confidence            344433 4457889999999999999999986   56999999999999999999998876  69999999865311   


Q ss_pred             hcccCCCceeEEEEeCC-----ccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           90 KYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        90 ~~~~~~~~~D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                           .++||+|++...     ......+++.+.++|+|||.+++....
T Consensus       182 -----~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  225 (286)
T 3m70_A          182 -----QENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAM  225 (286)
T ss_dssp             -----CSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             -----cCCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence                 378999998752     344568999999999999997764443

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.56  E-value=1.3e-14  Score=109.05  Aligned_cols=113  Identities=20%  Similarity=0.319  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029764            6 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   85 (188)
Q Consensus         6 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   85 (188)
                      +.....+...+...++.+|||+|||+|..+..+++..+  .+++++|+++++++.+++++...++.+ ++++.+|....+
T Consensus        77 ~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~  153 (235)
T 1jg1_A           77 PHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKN-VHVILGDGSKGF  153 (235)
T ss_dssp             HHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGCC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEECCcccCC
Confidence            44445555555667778999999999999999998764  699999999999999999999888764 999999973222


Q ss_pred             HHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           86 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        86 ~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      +.       ..+||+|+++......   .+.+.+.|+|||.+++.-
T Consensus       154 ~~-------~~~fD~Ii~~~~~~~~---~~~~~~~L~pgG~lvi~~  189 (235)
T 1jg1_A          154 PP-------KAPYDVIIVTAGAPKI---PEPLIEQLKIGGKLIIPV  189 (235)
T ss_dssp             GG-------GCCEEEEEECSBBSSC---CHHHHHTEEEEEEEEEEE
T ss_pred             CC-------CCCccEEEECCcHHHH---HHHHHHhcCCCcEEEEEE
Confidence            11       2469999998654433   246789999999999864

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.56  E-value=1e-14  Score=108.85  Aligned_cols=106  Identities=17%  Similarity=0.193  Sum_probs=83.5

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..++.+|||+|||+|..+..+++.+.+.++++++|+++++++.++++.+..   ++++++.+|+.+... +..   ..++
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~-~~~---~~~~  143 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEE-YRA---LVPK  143 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGG-GTT---TCCC
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCcch-hhc---ccCC
Confidence            346679999999999999999987644689999999999999999887654   479999999865311 000   1358


Q ss_pred             eeEEEEeCCccchH-HHHHHHHhccCcCeEEEEe
Q 029764           98 FDYAFVDADKDNYC-NYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        98 ~D~i~id~~~~~~~-~~~~~~~~~L~~gG~lv~~  130 (188)
                      ||+|+++....... .++..+.+.|+|||.+++.
T Consensus       144 ~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          144 VDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceEEEECCCCHhHHHHHHHHHHHhcCCCCEEEEE
Confidence            99999987544433 4489999999999999886

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.56  E-value=1.2e-14  Score=111.68  Aligned_cols=116  Identities=16%  Similarity=0.178  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc-C-CCCcEEEEEcchHHHH
Q 029764            8 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-G-VDHKINFIESEALSVL   85 (188)
Q Consensus         8 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~-~~~~~~~~~~d~~~~~   85 (188)
                      ....+...+...++.+|||+|||+|..+..++..+.+..+++++|+++++++.|+++++.. + +.++++++++|+.+..
T Consensus        87 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~  166 (280)
T 1i9g_A           87 DAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE  166 (280)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred             HHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence            3334444445667789999999999999999986544789999999999999999999887 4 4567999999986541


Q ss_pred             HHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764           86 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        86 ~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                        +     ..++||+|+++..  +...+++.+.++|+|||.+++...
T Consensus       167 --~-----~~~~~D~v~~~~~--~~~~~l~~~~~~L~pgG~l~~~~~  204 (280)
T 1i9g_A          167 --L-----PDGSVDRAVLDML--APWEVLDAVSRLLVAGGVLMVYVA  204 (280)
T ss_dssp             --C-----CTTCEEEEEEESS--CGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             --C-----CCCceeEEEECCc--CHHHHHHHHHHhCCCCCEEEEEeC
Confidence              1     1468999999753  445789999999999999998643

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.56  E-value=3.5e-15  Score=114.75  Aligned_cols=108  Identities=14%  Similarity=0.258  Sum_probs=87.6

Q ss_pred             HHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc-CCCCcEEEEEcchHHHHHHHhhcc
Q 029764           14 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-GVDHKINFIESEALSVLDQLLKYS   92 (188)
Q Consensus        14 ~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~   92 (188)
                      ..+...++.+|||+|||+|..+..+++.+.++.+++++|+++++++.++++++.. +. ++++++.+|+.+.+       
T Consensus       104 ~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~~~-------  175 (275)
T 1yb2_A          104 MRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIADFI-------  175 (275)
T ss_dssp             --CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTTCC-------
T ss_pred             HHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECchhccC-------
Confidence            3344567789999999999999999987433789999999999999999999887 74 46999999986521       


Q ss_pred             cCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764           93 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        93 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                       ..++||+|+++.  .+...+++.+.+.|+|||.+++...
T Consensus       176 -~~~~fD~Vi~~~--~~~~~~l~~~~~~LkpgG~l~i~~~  212 (275)
T 1yb2_A          176 -SDQMYDAVIADI--PDPWNHVQKIASMMKPGSVATFYLP  212 (275)
T ss_dssp             -CSCCEEEEEECC--SCGGGSHHHHHHTEEEEEEEEEEES
T ss_pred             -cCCCccEEEEcC--cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence             136899999964  3446789999999999999998653

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.56  E-value=2e-14  Score=115.32  Aligned_cols=114  Identities=14%  Similarity=0.169  Sum_probs=93.2

Q ss_pred             cHHHHHHHHHHHHHc-----CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc
Q 029764            5 APDAGQLMAMLLRLV-----NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   79 (188)
Q Consensus         5 ~~~~~~~l~~l~~~~-----~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~   79 (188)
                      .+.+..++..+....     ++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.+++++..+++.  ++++++
T Consensus       213 d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~---g~~V~gvDis~~al~~A~~n~~~~~~~--v~~~~~  287 (381)
T 3dmg_A          213 DPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM---GAEVVGVEDDLASVLSLQKGLEANALK--AQALHS  287 (381)
T ss_dssp             CHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT---TCEEEEEESBHHHHHHHHHHHHHTTCC--CEEEEC
T ss_pred             CHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCC--eEEEEc
Confidence            466677777776543     5679999999999999999986   569999999999999999999988764  889999


Q ss_pred             chHHHHHHHhhcccCCCceeEEEEeCC--------ccchHHHHHHHHhccCcCeEEEEe
Q 029764           80 EALSVLDQLLKYSENEGSFDYAFVDAD--------KDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        80 d~~~~~~~~~~~~~~~~~~D~i~id~~--------~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      |+.+....       .++||+|+++..        ......+++.+.++|+|||.+++.
T Consensus       288 D~~~~~~~-------~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv  339 (381)
T 3dmg_A          288 DVDEALTE-------EARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLV  339 (381)
T ss_dssp             STTTTSCT-------TCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             chhhcccc-------CCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEE
Confidence            98764221       378999999842        234567899999999999999885

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.56  E-value=2.8e-14  Score=113.54  Aligned_cols=118  Identities=16%  Similarity=0.165  Sum_probs=95.1

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029764            5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   84 (188)
Q Consensus         5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   84 (188)
                      .+..+..|..++...++.+|||+|||+|..++.++....+..+++++|+++++++.|++|++..++. ++++.++|+.+.
T Consensus       188 ~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~~  266 (354)
T 3tma_A          188 TPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARHL  266 (354)
T ss_dssp             CHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGGG
T ss_pred             CHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhhC
Confidence            3455555555666667789999999999999999997622689999999999999999999999987 899999999775


Q ss_pred             HHHHhhcccCCCceeEEEEeCCcc-----------chHHHHHHHHhccCcCeEEEEe
Q 029764           85 LDQLLKYSENEGSFDYAFVDADKD-----------NYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        85 ~~~~~~~~~~~~~~D~i~id~~~~-----------~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ...       ...||+|++|.+..           .+..+++.+.++|+|||.+++.
T Consensus       267 ~~~-------~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~  316 (354)
T 3tma_A          267 PRF-------FPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALL  316 (354)
T ss_dssp             GGT-------CCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEE
T ss_pred             ccc-------cCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            322       35689999985321           1367888889999999998884

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.56  E-value=4.6e-14  Score=102.76  Aligned_cols=107  Identities=15%  Similarity=0.190  Sum_probs=87.2

Q ss_pred             HHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           15 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        15 l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      ++...++.+|||+|||+|..+..++..   +.+++++|+++.+++.+++++...++. +++++.+|..+..  +      
T Consensus        27 ~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~--~------   94 (199)
T 2xvm_A           27 AVKVVKPGKTLDLGCGNGRNSLYLAAN---GYDVDAWDKNAMSIANVERIKSIENLD-NLHTRVVDLNNLT--F------   94 (199)
T ss_dssp             HTTTSCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECCGGGCC--C------
T ss_pred             HhhccCCCeEEEEcCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhCCCC-CcEEEEcchhhCC--C------
Confidence            344557789999999999999999986   569999999999999999999887764 5999999986531  1      


Q ss_pred             CCceeEEEEeCC-----ccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           95 EGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        95 ~~~~D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      .++||+|++...     ......+++.+.++|+|||.+++.+..
T Consensus        95 ~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  138 (199)
T 2xvm_A           95 DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAM  138 (199)
T ss_dssp             CCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             CCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEee
Confidence            378999998742     235678899999999999997775444

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.55  E-value=5.9e-14  Score=108.45  Aligned_cols=119  Identities=14%  Similarity=0.170  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCC---CcEEEEEcchHH
Q 029764            7 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD---HKINFIESEALS   83 (188)
Q Consensus         7 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~---~~~~~~~~d~~~   83 (188)
                      ...+++..++...++.+|||+|||+|..+..++..   +.+++++|+++.+++.|+++....+..   .++.+..+|..+
T Consensus        44 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~  120 (293)
T 3thr_A           44 EYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT  120 (293)
T ss_dssp             HHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG
T ss_pred             HHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhh
Confidence            34455666666678889999999999999999986   559999999999999999887543322   357888999876


Q ss_pred             HHHHHhhcccCCCceeEEEEeC----Cccc-------hHHHHHHHHhccCcCeEEEEecc
Q 029764           84 VLDQLLKYSENEGSFDYAFVDA----DKDN-------YCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        84 ~~~~~~~~~~~~~~~D~i~id~----~~~~-------~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      ....+.    ..++||+|++.+    +..+       ...+++++.++|+|||++++...
T Consensus       121 ~~~~~~----~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  176 (293)
T 3thr_A          121 LDKDVP----AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR  176 (293)
T ss_dssp             HHHHSC----CTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             Cccccc----cCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            543321    247999999862    2223       67899999999999999998643

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.55  E-value=2.1e-14  Score=108.33  Aligned_cols=114  Identities=24%  Similarity=0.327  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029764            6 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   85 (188)
Q Consensus         6 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   85 (188)
                      +.....+...+...++.+|||+|||+|..+..+++.   ..+++++|+++++++.|+++++..++.++++++.+|..+..
T Consensus        77 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~  153 (248)
T 2yvl_A           77 PKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAE  153 (248)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSC
T ss_pred             chhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcc
Confidence            333344444555667889999999999999999987   57999999999999999999998888778999999986532


Q ss_pred             HHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           86 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        86 ~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      .       ..++||+|+++..  +...+++.+.++|+|||.+++..
T Consensus       154 ~-------~~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~  190 (248)
T 2yvl_A          154 V-------PEGIFHAAFVDVR--EPWHYLEKVHKSLMEGAPVGFLL  190 (248)
T ss_dssp             C-------CTTCBSEEEECSS--CGGGGHHHHHHHBCTTCEEEEEE
T ss_pred             c-------CCCcccEEEECCc--CHHHHHHHHHHHcCCCCEEEEEe
Confidence            0       1368999999643  44577899999999999999864

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.54  E-value=1.2e-14  Score=108.87  Aligned_cols=105  Identities=16%  Similarity=0.093  Sum_probs=82.5

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..++.+|||+|||+|..+..++...+ .++|+++|+++++++.++++....   +++.++.+|+.+....+ .   ..++
T Consensus        72 ~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~-~---~~~~  143 (230)
T 1fbn_A           72 IKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYA-N---IVEK  143 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGT-T---TSCC
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCccccc-c---cCcc
Confidence            34567999999999999999999876 689999999999999999886544   57999999986521101 0   1268


Q ss_pred             eeEEEEeCC-ccchHHHHHHHHhccCcCeEEEEe
Q 029764           98 FDYAFVDAD-KDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        98 ~D~i~id~~-~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ||+|+.+.. ......+++++.+.|+|||.+++.
T Consensus       144 ~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          144 VDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEEecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            999997643 223366799999999999999985

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.54  E-value=4.3e-14  Score=103.46  Aligned_cols=111  Identities=14%  Similarity=0.120  Sum_probs=87.0

Q ss_pred             HHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhc
Q 029764           12 MAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY   91 (188)
Q Consensus        12 l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   91 (188)
                      +..++...++.+|||+|||+|..+..++..   +.+++++|+++.+++.+++++...+.  +++++++|..+.  .+   
T Consensus        21 l~~~~~~~~~~~vLdiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~--~~---   90 (202)
T 2kw5_A           21 LVSVANQIPQGKILCLAEGEGRNACFLASL---GYEVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADF--DI---   90 (202)
T ss_dssp             HHHHHHHSCSSEEEECCCSCTHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTB--SC---
T ss_pred             HHHHHHhCCCCCEEEECCCCCHhHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhc--CC---
Confidence            334444333349999999999999999885   56999999999999999999887764  689999998653  11   


Q ss_pred             ccCCCceeEEEEeCCc---cchHHHHHHHHhccCcCeEEEEecccc
Q 029764           92 SENEGSFDYAFVDADK---DNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        92 ~~~~~~~D~i~id~~~---~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                        ..++||+|++...+   .....+++.+.++|+|||.+++.....
T Consensus        91 --~~~~fD~v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  134 (202)
T 2kw5_A           91 --VADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAP  134 (202)
T ss_dssp             --CTTTCSEEEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECT
T ss_pred             --CcCCccEEEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence              24689999986422   345778999999999999999976554

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.54  E-value=6.3e-15  Score=110.13  Aligned_cols=113  Identities=15%  Similarity=0.190  Sum_probs=86.5

Q ss_pred             HHHHHHHHH-HHcCCCEEEEEcccchHHHHHHHhhCCC-----CCEEEEEeCCchhHHHHHHHHHhcCC----CCcEEEE
Q 029764            8 AGQLMAMLL-RLVNAKKTIEIGVFTGYSLLLTALTIPE-----DGQITAIDVNRETYEIGLPIIKKAGV----DHKINFI   77 (188)
Q Consensus         8 ~~~~l~~l~-~~~~~~~vLeiG~g~G~~~~~la~~~~~-----~~~v~~iD~~~~~~~~a~~~~~~~~~----~~~~~~~   77 (188)
                      ...++..+. ...++.+|||+|||+|+.+..+++..+.     .++|+++|+++++++.+++++...+.    .++++++
T Consensus        71 ~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~  150 (227)
T 1r18_A           71 HAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIV  150 (227)
T ss_dssp             HHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEE
Confidence            344555444 3556679999999999999999986531     25999999999999999999887651    2469999


Q ss_pred             EcchHHHHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           78 ESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        78 ~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      .+|..+.++.       .++||+|+++......   .+.+.++|+|||.+++.
T Consensus       151 ~~d~~~~~~~-------~~~fD~I~~~~~~~~~---~~~~~~~LkpgG~lvi~  193 (227)
T 1r18_A          151 EGDGRKGYPP-------NAPYNAIHVGAAAPDT---PTELINQLASGGRLIVP  193 (227)
T ss_dssp             ESCGGGCCGG-------GCSEEEEEECSCBSSC---CHHHHHTEEEEEEEEEE
T ss_pred             ECCcccCCCc-------CCCccEEEECCchHHH---HHHHHHHhcCCCEEEEE
Confidence            9998762221       2689999998754443   46788999999999986

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.54  E-value=2.8e-14  Score=106.61  Aligned_cols=110  Identities=23%  Similarity=0.322  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029764            6 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   85 (188)
Q Consensus         6 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   85 (188)
                      +.....+...+...++.+|||+|||+|..+..++...   .+++++|+++++++.+++++...+   +++++.+|..+..
T Consensus        56 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~~~  129 (231)
T 1vbf_A           56 LNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTLGY  129 (231)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGGCC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCccccc
Confidence            3444444444556677899999999999999999874   699999999999999999987665   6999999987632


Q ss_pred             HHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           86 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        86 ~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      +.       .++||+|+++....+.   .+.+.++|+|||.+++..
T Consensus       130 ~~-------~~~fD~v~~~~~~~~~---~~~~~~~L~pgG~l~~~~  165 (231)
T 1vbf_A          130 EE-------EKPYDRVVVWATAPTL---LCKPYEQLKEGGIMILPI  165 (231)
T ss_dssp             GG-------GCCEEEEEESSBBSSC---CHHHHHTEEEEEEEEEEE
T ss_pred             cc-------CCCccEEEECCcHHHH---HHHHHHHcCCCcEEEEEE
Confidence            21       3789999998644433   246889999999999864

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.54  E-value=5.7e-14  Score=107.51  Aligned_cols=112  Identities=13%  Similarity=0.095  Sum_probs=86.1

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCch------hHHHHHHHHHhcCCCCcEEEEEcc-hHHHHHHHhh
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRE------TYEIGLPIIKKAGVDHKINFIESE-ALSVLDQLLK   90 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~------~~~~a~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~   90 (188)
                      ..++.+|||||||+|..+..++....+..+++++|++++      +++.+++++...++.++++++.+| .......+  
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--  118 (275)
T 3bkx_A           41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPI--  118 (275)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGG--
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCC--
Confidence            456789999999999999999998633689999999997      999999999988877789999998 21110011  


Q ss_pred             cccCCCceeEEEEeCC---ccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           91 YSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        91 ~~~~~~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                         ..++||+|++...   ..+...+++.+..++++||.+++.+...
T Consensus       119 ---~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~  162 (275)
T 3bkx_A          119 ---ADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSM  162 (275)
T ss_dssp             ---TTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECS
T ss_pred             ---CCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence               2478999998753   2334556667777788899999977654

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.54  E-value=5.9e-15  Score=112.19  Aligned_cols=105  Identities=18%  Similarity=0.239  Sum_probs=86.0

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..++.+|||+|||+|..+..++...  +.+++++|+++.+++.+++++...   ++++++++|..+.  .+     ..++
T Consensus        53 ~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~--~~-----~~~~  120 (266)
T 3ujc_A           53 LNENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTK--EF-----PENN  120 (266)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTC--CC-----CTTC
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccC--CC-----CCCc
Confidence            4466799999999999999999875  569999999999999999876543   5799999998653  11     2478


Q ss_pred             eeEEEEeCC---c--cchHHHHHHHHhccCcCeEEEEecccc
Q 029764           98 FDYAFVDAD---K--DNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        98 ~D~i~id~~---~--~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      ||+|++...   .  .+...+++.+.++|+|||.+++.+...
T Consensus       121 fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  162 (266)
T 3ujc_A          121 FDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCA  162 (266)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             EEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence            999998742   2  556788999999999999999987654

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.54  E-value=9.4e-14  Score=104.14  Aligned_cols=106  Identities=14%  Similarity=0.128  Sum_probs=79.0

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..++.+|||+|||+|..+..+|....+.++|+++|+++.+++...+..+..   .++.++.+|+...... .   ...++
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~~~~~~-~---~~~~~  146 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADARFPQSY-K---SVVEN  146 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTTCGGGT-T---TTCCC
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEcccccchhh-h---ccccc
Confidence            557789999999999999999987765789999999999876555444332   3699999998642110 0   01368


Q ss_pred             eeEEEEeCCccchHHHH-HHHHhccCcCeEEEEe
Q 029764           98 FDYAFVDADKDNYCNYH-ERLMKLLKVGGIAVYD  130 (188)
Q Consensus        98 ~D~i~id~~~~~~~~~~-~~~~~~L~~gG~lv~~  130 (188)
                      ||+||+|.........+ ..+.+.|||||.+++.
T Consensus       147 ~D~I~~d~a~~~~~~il~~~~~~~LkpGG~lvis  180 (232)
T 3id6_C          147 VDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLV  180 (232)
T ss_dssp             EEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEecCCChhHHHHHHHHHHHhCCCCeEEEEE
Confidence            99999997665555544 4555599999999986

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.53  E-value=6.9e-14  Score=105.73  Aligned_cols=110  Identities=16%  Similarity=0.314  Sum_probs=86.4

Q ss_pred             HHHHHHHHHH---cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029764            9 GQLMAMLLRL---VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   85 (188)
Q Consensus         9 ~~~l~~l~~~---~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   85 (188)
                      ..++..++..   .++.+|||+|||+|..+..+++.   +.+++++|+++++++.+++++...+.  +++++++|..+..
T Consensus        27 ~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~  101 (252)
T 1wzn_A           27 IDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIA  101 (252)
T ss_dssp             HHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCC
T ss_pred             HHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhcc
Confidence            3444544443   34579999999999999999985   56999999999999999999887764  5899999987531


Q ss_pred             HHHhhcccCCCceeEEEEeCC------ccchHHHHHHHHhccCcCeEEEEec
Q 029764           86 DQLLKYSENEGSFDYAFVDAD------KDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        86 ~~~~~~~~~~~~~D~i~id~~------~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                        +      .++||+|++...      ......+++.+.++|+|||.++++-
T Consensus       102 --~------~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~  145 (252)
T 1wzn_A          102 --F------KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF  145 (252)
T ss_dssp             --C------CSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --c------CCCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence              1      368999997531      1345678899999999999999863

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.53  E-value=5.3e-14  Score=112.26  Aligned_cols=110  Identities=15%  Similarity=0.132  Sum_probs=90.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++.+|||||||+|..+..+++..| +.+++++|+ |++++.|++++...++.++++++.+|..+.-..+      .++|
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------p~~~  249 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNK-EVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPF------PTGF  249 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHST-TCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCC------CCCC
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCC-CCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCC------CCCc
Confidence            4678999999999999999999987 789999999 9999999999988888788999999986420001      2589


Q ss_pred             eEEEEeCC-----ccchHHHHHHHHhccCcCeEEEEeccccCc
Q 029764           99 DYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLWGG  136 (188)
Q Consensus        99 D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  136 (188)
                      |+|++...     ......+++++.+.|+|||.+++.+..++.
T Consensus       250 D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  292 (363)
T 3dp7_A          250 DAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDR  292 (363)
T ss_dssp             SEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTS
T ss_pred             CEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCC
Confidence            99998642     223357889999999999999998876643

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.53  E-value=9e-15  Score=111.51  Aligned_cols=105  Identities=15%  Similarity=0.150  Sum_probs=81.7

Q ss_pred             HHHHHHHHHcC-CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029764           10 QLMAMLLRLVN-AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   88 (188)
Q Consensus        10 ~~l~~l~~~~~-~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   88 (188)
                      +++..+....+ ..+|||||||+|..+..++..   ..+|+++|+++.+++.|++       .++++++++++.+.  .+
T Consensus        28 ~l~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~---~~~v~gvD~s~~ml~~a~~-------~~~v~~~~~~~e~~--~~   95 (257)
T 4hg2_A           28 ALFRWLGEVAPARGDALDCGCGSGQASLGLAEF---FERVHAVDPGEAQIRQALR-------HPRVTYAVAPAEDT--GL   95 (257)
T ss_dssp             HHHHHHHHHSSCSSEEEEESCTTTTTHHHHHTT---CSEEEEEESCHHHHHTCCC-------CTTEEEEECCTTCC--CC
T ss_pred             HHHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHh---CCEEEEEeCcHHhhhhhhh-------cCCceeehhhhhhh--cc
Confidence            45555555443 458999999999999999986   4699999999999887653       24699999998653  11


Q ss_pred             hhcccCCCceeEEEEeC--CccchHHHHHHHHhccCcCeEEEEec
Q 029764           89 LKYSENEGSFDYAFVDA--DKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        89 ~~~~~~~~~~D~i~id~--~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                           ..++||+|++..  +.-+...++.++.++|||||.+++-.
T Consensus        96 -----~~~sfD~v~~~~~~h~~~~~~~~~e~~rvLkpgG~l~~~~  135 (257)
T 4hg2_A           96 -----PPASVDVAIAAQAMHWFDLDRFWAELRRVARPGAVFAAVT  135 (257)
T ss_dssp             -----CSSCEEEEEECSCCTTCCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -----cCCcccEEEEeeehhHhhHHHHHHHHHHHcCCCCEEEEEE
Confidence                 257999999874  33456789999999999999988754

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.53  E-value=2.2e-14  Score=115.28  Aligned_cols=116  Identities=14%  Similarity=0.258  Sum_probs=90.6

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc-----C-CC-CcEEEEEcchHHHHHHHhh
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-----G-VD-HKINFIESEALSVLDQLLK   90 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-----~-~~-~~~~~~~~d~~~~~~~~~~   90 (188)
                      ..++.+|||+|||+|..+..++....++.+|+++|+++.+++.++++++..     | +. ++++++++|+.+... ...
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~-~~~  159 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLAT-AEP  159 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGG-CBS
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhh-ccc
Confidence            457789999999999999999998744789999999999999999988754     3 22 579999999865311 000


Q ss_pred             cccCCCceeEEEEeCC---ccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           91 YSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        91 ~~~~~~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      .....++||+|++...   ..+...+++++.++|||||++++.+...
T Consensus       160 ~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~  206 (383)
T 4fsd_A          160 EGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYA  206 (383)
T ss_dssp             CCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             CCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEecc
Confidence            0012478999998853   3456789999999999999999987654

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.53  E-value=1.9e-13  Score=109.50  Aligned_cols=105  Identities=17%  Similarity=0.202  Sum_probs=89.5

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc---------------CCCCcEEEEEcchH
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA---------------GVDHKINFIESEAL   82 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~---------------~~~~~~~~~~~d~~   82 (188)
                      ..++.+|||+|||+|..++.++...+ ..+|+++|+++++++.+++|++.+               ++.+ ++++++|+.
T Consensus        45 ~~~~~~VLDl~aGtG~~~l~~a~~~~-~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~-i~v~~~Da~  122 (378)
T 2dul_A           45 ILNPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKT-IVINHDDAN  122 (378)
T ss_dssp             HHCCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSE-EEEEESCHH
T ss_pred             HcCCCEEEECCCchhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCc-eEEEcCcHH
Confidence            34788999999999999999999875 578999999999999999999988               7654 999999998


Q ss_pred             HHHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           83 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        83 ~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      +.+...      ...||+|++|.. ....++++.+.+.|++||++++..
T Consensus       123 ~~~~~~------~~~fD~I~lDP~-~~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          123 RLMAER------HRYFHFIDLDPF-GSPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HHHHHS------TTCEEEEEECCS-SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHhc------cCCCCEEEeCCC-CCHHHHHHHHHHhcCCCCEEEEEe
Confidence            876543      358999999863 344688999999999999888754

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.52  E-value=6.3e-14  Score=105.22  Aligned_cols=109  Identities=15%  Similarity=0.148  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHc--CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764            9 GQLMAMLLRLV--NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   86 (188)
Q Consensus         9 ~~~l~~l~~~~--~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   86 (188)
                      .+.+..++...  ++.+|||+|||+|..+..++..   +.+++++|+++.+++.+++++...+.  +++++++|..+.. 
T Consensus        24 ~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~-   97 (246)
T 1y8c_A           24 SDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLN-   97 (246)
T ss_dssp             HHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCC-
T ss_pred             HHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHC---CCcEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccCC-
Confidence            34444444433  6789999999999999999886   56999999999999999999887664  6899999986531 


Q ss_pred             HHhhcccCCCceeEEEEeC-C---c---cchHHHHHHHHhccCcCeEEEEe
Q 029764           87 QLLKYSENEGSFDYAFVDA-D---K---DNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        87 ~~~~~~~~~~~~D~i~id~-~---~---~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                       +      .++||+|++.. .   .   .....+++.+.++|+|||.++++
T Consensus        98 -~------~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  141 (246)
T 1y8c_A           98 -I------NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             -C------SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             -c------cCCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence             1      36899999875 2   1   45577899999999999999984

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.52  E-value=3.5e-14  Score=104.32  Aligned_cols=118  Identities=11%  Similarity=0.171  Sum_probs=90.6

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029764            5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   84 (188)
Q Consensus         5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   84 (188)
                      .....+++..+....++.+|||+|||+|..+..++..  .+.+++++|+++++++.+++++...+  .+++++++|+.+.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~   83 (209)
T 2p8j_A            8 QPQLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVE--DGYKTYGIEISDLQLKKAENFSRENN--FKLNISKGDIRKL   83 (209)
T ss_dssp             CTHHHHHHHHHHHSSSCSEEEEESCCSSSCTHHHHHH--TTCEEEEEECCHHHHHHHHHHHHHHT--CCCCEEECCTTSC
T ss_pred             hhhHHHHHHHHhccCCCCEEEEECCCCCHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEECchhhC
Confidence            3445667777777777889999999999975444433  26799999999999999999987765  3588899998653


Q ss_pred             HHHHhhcccCCCceeEEEEeCCc-----cchHHHHHHHHhccCcCeEEEEeccc
Q 029764           85 LDQLLKYSENEGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        85 ~~~~~~~~~~~~~~D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                       + +     ..++||+|++....     .+...+++.+.++|+|||.+++....
T Consensus        84 -~-~-----~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  130 (209)
T 2p8j_A           84 -P-F-----KDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLT  130 (209)
T ss_dssp             -C-S-----CTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             -C-C-----CCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence             1 1     24689999986421     45678899999999999999997654

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.52  E-value=1.4e-13  Score=110.50  Aligned_cols=106  Identities=19%  Similarity=0.116  Sum_probs=90.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCc-EEEEEcchHHHHH-HHhhcccCCC
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK-INFIESEALSVLD-QLLKYSENEG   96 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~-~~~~~~d~~~~~~-~~~~~~~~~~   96 (188)
                      .++.+|||++||+|..++.+|+..+...+|+++|+++++++.+++|++.+++.++ ++++++|+.+.+. .+      .+
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~------~~  124 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW------GF  124 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC------SS
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh------CC
Confidence            3567999999999999999998754126899999999999999999999998877 9999999988776 53      36


Q ss_pred             ceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           97 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        97 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      .||+|++|. .....++++.+.++|++||++++..
T Consensus       125 ~fD~V~lDP-~g~~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          125 GFDYVDLDP-FGTPVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             CEEEEEECC-SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCcEEEECC-CcCHHHHHHHHHHHhCCCCEEEEEe
Confidence            799999997 3334678999999999999888854

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.52  E-value=5.4e-14  Score=105.41  Aligned_cols=104  Identities=17%  Similarity=0.178  Sum_probs=82.0

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcccCC
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENE   95 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~   95 (188)
                      ..++.+|||+|||+|..+..+++...+.++++++|+++.+++.+.++.+..   .+++++.+|+.+.  ++..      .
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~------~  145 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHKYRML------I  145 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGGGGGG------C
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhhhccc------C
Confidence            345679999999999999999998643679999999999888887776654   4699999998653  1211      4


Q ss_pred             CceeEEEEeCCccc-hHHHHHHHHhccCcCeEEEEe
Q 029764           96 GSFDYAFVDADKDN-YCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        96 ~~~D~i~id~~~~~-~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ++||+|+++..... ...++.++.+.|+|||.+++.
T Consensus       146 ~~~D~V~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~  181 (233)
T 2ipx_A          146 AMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVIS  181 (233)
T ss_dssp             CCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CcEEEEEEcCCCccHHHHHHHHHHHHcCCCeEEEEE
Confidence            68999999865322 245678899999999999984

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.52  E-value=4e-14  Score=113.51  Aligned_cols=106  Identities=14%  Similarity=0.199  Sum_probs=87.8

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      ...++++|||+|||+|..+..+++..  ..+|+++|++ ++++.|+++++..++.++++++++|+.+..  +      .+
T Consensus        60 ~~~~~~~VLDlGcGtG~ls~~la~~g--~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~------~~  128 (376)
T 3r0q_C           60 HHFEGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDIS--L------PE  128 (376)
T ss_dssp             TTTTTCEEEEESCTTTHHHHHHHHTT--CSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCC--C------SS
T ss_pred             ccCCCCEEEEeccCcCHHHHHHHhcC--CCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcC--c------CC
Confidence            34577899999999999999999862  3599999999 999999999999999888999999997641  1      37


Q ss_pred             ceeEEEEeC--C----ccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           97 SFDYAFVDA--D----KDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        97 ~~D~i~id~--~----~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      +||+|+++.  .    ......++..+.++|+|||++++....
T Consensus       129 ~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~  171 (376)
T 3r0q_C          129 KVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHAR  171 (376)
T ss_dssp             CEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEEE
T ss_pred             cceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecCe
Confidence            899999864  1    133567888889999999999886554

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.52  E-value=1.2e-13  Score=109.21  Aligned_cols=102  Identities=19%  Similarity=0.145  Sum_probs=87.1

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..++.+|||+|||+|..++. ++  . ..+|+++|+++.+++.+++|++.+++.++++++++|+.+.+          ++
T Consensus       193 ~~~~~~VLDlg~G~G~~~l~-a~--~-~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~----------~~  258 (336)
T 2yx1_A          193 VSLNDVVVDMFAGVGPFSIA-CK--N-AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD----------VK  258 (336)
T ss_dssp             CCTTCEEEETTCTTSHHHHH-TT--T-SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC----------CC
T ss_pred             cCCCCEEEEccCccCHHHHh-cc--C-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc----------CC
Confidence            35778999999999999999 87  2 67999999999999999999999998778999999997642          57


Q ss_pred             eeEEEEeCCccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           98 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        98 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      ||+|++|.+. ....+++.+.++|++||.+++.+...
T Consensus       259 fD~Vi~dpP~-~~~~~l~~~~~~L~~gG~l~~~~~~~  294 (336)
T 2yx1_A          259 GNRVIMNLPK-FAHKFIDKALDIVEEGGVIHYYTIGK  294 (336)
T ss_dssp             EEEEEECCTT-TGGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred             CcEEEECCcH-hHHHHHHHHHHHcCCCCEEEEEEeec
Confidence            9999998643 33478899999999999998876553

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.52  E-value=6.6e-14  Score=111.20  Aligned_cols=105  Identities=18%  Similarity=0.242  Sum_probs=87.4

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      ...++++|||+|||+|..+..+++. + ..+|+++|++ ++++.|+++++..++.++++++++|+.+.  .+     ..+
T Consensus        63 ~~~~~~~VLDvGcG~G~~~~~la~~-g-~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~--~~-----~~~  132 (349)
T 3q7e_A           63 HLFKDKVVLDVGSGTGILCMFAAKA-G-ARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEV--EL-----PVE  132 (349)
T ss_dssp             HHHTTCEEEEESCTTSHHHHHHHHT-T-CSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTC--CC-----SSS
T ss_pred             ccCCCCEEEEEeccchHHHHHHHHC-C-CCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHc--cC-----CCC
Confidence            4668889999999999999999986 3 5699999999 59999999999999988899999998765  11     247


Q ss_pred             ceeEEEEeC------CccchHHHHHHHHhccCcCeEEEEec
Q 029764           97 SFDYAFVDA------DKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        97 ~~D~i~id~------~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      +||+|+++.      .......++..+.++|+|||.++.+.
T Consensus       133 ~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~  173 (349)
T 3q7e_A          133 KVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDR  173 (349)
T ss_dssp             CEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCE
T ss_pred             ceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEcccc
Confidence            899999863      23456778888899999999998543

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.52  E-value=3.6e-14  Score=106.72  Aligned_cols=99  Identities=15%  Similarity=0.192  Sum_probs=80.9

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..++.+|||||||+|..+..++..   +.+++++|+++++++.++++         ++++.+|..+.+..+     ..++
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~-----~~~~  101 (240)
T 3dli_A           39 FKGCRRVLDIGCGRGEFLELCKEE---GIESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSL-----PDKY  101 (240)
T ss_dssp             TTTCSCEEEETCTTTHHHHHHHHH---TCCEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTS-----CTTC
T ss_pred             hcCCCeEEEEeCCCCHHHHHHHhC---CCcEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhc-----CCCC
Confidence            346689999999999999999886   56899999999999988864         678899988765443     2478


Q ss_pred             eeEEEEeCC-----ccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           98 FDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        98 ~D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      ||+|++...     ......+++++.++|||||.+++....
T Consensus       102 fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  142 (240)
T 3dli_A          102 LDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPN  142 (240)
T ss_dssp             BSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEEC
T ss_pred             eeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            999998742     224578999999999999999997554

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.52  E-value=4.7e-14  Score=104.15  Aligned_cols=110  Identities=15%  Similarity=0.156  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029764            9 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   88 (188)
Q Consensus         9 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   88 (188)
                      ..++..+....++.+|||+|||+|..+..++..   +.+++++|+++.+++.+++    .+. .+++++++|..+.   +
T Consensus        35 ~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~----~~~-~~~~~~~~d~~~~---~  103 (218)
T 3ou2_A           35 PAALERLRAGNIRGDVLELASGTGYWTRHLSGL---ADRVTALDGSAEMIAEAGR----HGL-DNVEFRQQDLFDW---T  103 (218)
T ss_dssp             HHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHGG----GCC-TTEEEEECCTTSC---C
T ss_pred             HHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHh----cCC-CCeEEEecccccC---C
Confidence            345555555667789999999999999999987   5699999999999999987    333 4699999998654   1


Q ss_pred             hhcccCCCceeEEEEeCCcc---c--hHHHHHHHHhccCcCeEEEEecccc
Q 029764           89 LKYSENEGSFDYAFVDADKD---N--YCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        89 ~~~~~~~~~~D~i~id~~~~---~--~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                           ..++||+|++.....   +  ...+++.+.++|+|||.+++.+...
T Consensus       104 -----~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  149 (218)
T 3ou2_A          104 -----PDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTD  149 (218)
T ss_dssp             -----CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             -----CCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence                 257999999875322   2  3678999999999999999976543

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.52  E-value=8.7e-14  Score=103.40  Aligned_cols=103  Identities=15%  Similarity=0.172  Sum_probs=83.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++.+|||+|||+|..+..++...+   +++++|+++++++.+++++...+  .+++++++|..+..  +     ..++|
T Consensus        37 ~~~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~--~-----~~~~~  104 (227)
T 1ve3_A           37 KKRGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLS--F-----EDKTF  104 (227)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCC--S-----CTTCE
T ss_pred             CCCCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcCC--C-----CCCcE
Confidence            3467999999999999999998743   99999999999999999988766  57899999986531  1     14689


Q ss_pred             eEEEEeCC--c---cchHHHHHHHHhccCcCeEEEEeccc
Q 029764           99 DYAFVDAD--K---DNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        99 D~i~id~~--~---~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      |+|++...  .   .+...+++.+.++|+|||.+++.+..
T Consensus       105 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  144 (227)
T 1ve3_A          105 DYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  144 (227)
T ss_dssp             EEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence            99998754  2   24567889999999999999887554

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.51  E-value=1.6e-13  Score=101.74  Aligned_cols=105  Identities=11%  Similarity=0.107  Sum_probs=82.7

Q ss_pred             HHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764           16 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      +...++.+|||+|||+|..+..++..   +.+++++|+++.+++.++++       .++.+..++..+......   ...
T Consensus        48 ~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~---~~~  114 (227)
T 3e8s_A           48 ILGRQPERVLDLGCGEGWLLRALADR---GIEAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAKV---PVG  114 (227)
T ss_dssp             HHHTCCSEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTCS---CCC
T ss_pred             hhcCCCCEEEEeCCCCCHHHHHHHHC---CCEEEEEcCCHHHHHHHHHh-------cccccchhhHHhhccccc---ccC
Confidence            34456789999999999999999986   56999999999999999886       356788888866522111   123


Q ss_pred             CceeEEEEeCC--ccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           96 GSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        96 ~~~D~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      .+||+|++...  ..+...+++.+.++|+|||.+++.+..
T Consensus       115 ~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~  154 (227)
T 3e8s_A          115 KDYDLICANFALLHQDIIELLSAMRTLLVPGGALVIQTLH  154 (227)
T ss_dssp             CCEEEEEEESCCCSSCCHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CCccEEEECchhhhhhHHHHHHHHHHHhCCCeEEEEEecC
Confidence            56999998742  556778999999999999999997653

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.51  E-value=2.6e-14  Score=109.29  Aligned_cols=97  Identities=9%  Similarity=0.045  Sum_probs=79.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc--CC-CCcEEEEEcchHHHHHHHhhcccCC
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GV-DHKINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~-~~~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      .++++|||||||+|..+..+++. +  .+++++|+++++++.|++++...  ++ .++++++.+|+.+.+          
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~-~--~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~----------  137 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKY-D--THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI----------  137 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTS-S--CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC----------
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhC-C--CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH----------
Confidence            46689999999999999999887 4  79999999999999999876431  12 357999999986542          


Q ss_pred             CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ++||+|++|...  ...+++.+.++|+|||++++.
T Consensus       138 ~~fD~Ii~d~~d--p~~~~~~~~~~L~pgG~lv~~  170 (262)
T 2cmg_A          138 KKYDLIFCLQEP--DIHRIDGLKRMLKEDGVFISV  170 (262)
T ss_dssp             CCEEEEEESSCC--CHHHHHHHHTTEEEEEEEEEE
T ss_pred             hhCCEEEECCCC--hHHHHHHHHHhcCCCcEEEEE
Confidence            579999999633  345899999999999999985

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.51  E-value=9.7e-14  Score=109.88  Aligned_cols=103  Identities=17%  Similarity=0.182  Sum_probs=84.4

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      ...++.+|||+|||+|..+..+++. + ..+|+++|+++ +++.|+++++..++.++++++.+|+.+.  .+     ..+
T Consensus        61 ~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~-----~~~  130 (340)
T 2fyt_A           61 HIFKDKVVLDVGCGTGILSMFAAKA-G-AKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEV--HL-----PVE  130 (340)
T ss_dssp             GGTTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTS--CC-----SCS
T ss_pred             hhcCCCEEEEeeccCcHHHHHHHHc-C-CCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHh--cC-----CCC
Confidence            3567789999999999999999986 2 46999999996 9999999999999878899999998754  11     136


Q ss_pred             ceeEEEEeC------CccchHHHHHHHHhccCcCeEEEE
Q 029764           97 SFDYAFVDA------DKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        97 ~~D~i~id~------~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      +||+|++..      .......++..+.++|+|||.++.
T Consensus       131 ~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip  169 (340)
T 2fyt_A          131 KVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP  169 (340)
T ss_dssp             CEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             cEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEEc
Confidence            899999864      123456688888999999999984

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.51  E-value=7e-13  Score=104.29  Aligned_cols=106  Identities=16%  Similarity=0.212  Sum_probs=88.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++.+|||+|||+|..+..+++..+ +.+++++|++ ++++.+++++...++.++++++.+|..+.  .+      ...|
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~------~~~~  233 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNP-NAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEV--DY------GNDY  233 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCT-TCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTS--CC------CSCE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCC-CCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccC--CC------CCCC
Confidence            5667999999999999999999886 7899999999 99999999999888877899999998653  11      2459


Q ss_pred             eEEEEeCCc-----cchHHHHHHHHhccCcCeEEEEecccc
Q 029764           99 DYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        99 D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      |+|++....     .....+++++.+.|+|||.+++.+...
T Consensus       234 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~  274 (335)
T 2r3s_A          234 DLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIP  274 (335)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred             cEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecC
Confidence            999986422     334688999999999999888877665

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.50  E-value=1.7e-14  Score=109.35  Aligned_cols=120  Identities=13%  Similarity=0.117  Sum_probs=86.5

Q ss_pred             HHHHHHHHHc---CCCEEEEEcccchHHHHHHHhh--CCCCCEEEEEeCCchhHHHHHHHHHhc---CCCCc--------
Q 029764           10 QLMAMLLRLV---NAKKTIEIGVFTGYSLLLTALT--IPEDGQITAIDVNRETYEIGLPIIKKA---GVDHK--------   73 (188)
Q Consensus        10 ~~l~~l~~~~---~~~~vLeiG~g~G~~~~~la~~--~~~~~~v~~iD~~~~~~~~a~~~~~~~---~~~~~--------   73 (188)
                      +++..++...   ++.+|||+|||+|..+..++..  .+ +.+|+++|+++++++.|++++...   ++.++        
T Consensus        38 ~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~-~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~  116 (250)
T 1o9g_A           38 EIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRS-LRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQS  116 (250)
T ss_dssp             HHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGG-EEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccC-CCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhh
Confidence            4555555442   4569999999999999999987  33 579999999999999999988765   43222        


Q ss_pred             -----------------EE-------------EEEcchHHHHHHHhhcccCCCceeEEEEeCCc------------cchH
Q 029764           74 -----------------IN-------------FIESEALSVLDQLLKYSENEGSFDYAFVDADK------------DNYC  111 (188)
Q Consensus        74 -----------------~~-------------~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~------------~~~~  111 (188)
                                       ++             ++++|..+..+.....  ...+||+|+++...            ..+.
T Consensus       117 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~--~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~  194 (250)
T 1o9g_A          117 ERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVL--AGSAPDVVLTDLPYGERTHWEGQVPGQPVA  194 (250)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHH--TTCCCSEEEEECCGGGSSSSSSCCCHHHHH
T ss_pred             hhcccccchhhhhhhhhhhhhccccccccccceeeccccccccccccc--CCCCceEEEeCCCeeccccccccccccHHH
Confidence                             55             8899886632110000  13489999997421            2345


Q ss_pred             HHHHHHHhccCcCeEEEEecc
Q 029764          112 NYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus       112 ~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      .+++.+.++|+|||++++.+.
T Consensus       195 ~~l~~~~~~LkpgG~l~~~~~  215 (250)
T 1o9g_A          195 GLLRSLASALPAHAVIAVTDR  215 (250)
T ss_dssp             HHHHHHHHHSCTTCEEEEEES
T ss_pred             HHHHHHHHhcCCCcEEEEeCc
Confidence            788999999999999998433

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.50  E-value=1.5e-13  Score=106.05  Aligned_cols=106  Identities=12%  Similarity=0.124  Sum_probs=86.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++.+|||+|||+|..+..++.. + ..+++++|+++++++.|++++...+...+++++++|+.+.  .+.    ..++|
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~----~~~~f  134 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERA-G-IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR--HMD----LGKEF  134 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHH-T-CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTS--CCC----CSSCE
T ss_pred             CCCCeEEEECCCCCHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCcccc--ccC----CCCCc
Confidence            57789999999999998888875 2 4699999999999999999998887767899999998653  110    14689


Q ss_pred             eEEEEeCCc-------cchHHHHHHHHhccCcCeEEEEecc
Q 029764           99 DYAFVDADK-------DNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        99 D~i~id~~~-------~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      |+|++....       .+...+++.+.++|+|||.+++...
T Consensus       135 D~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  175 (298)
T 1ri5_A          135 DVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP  175 (298)
T ss_dssp             EEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            999987532       3456789999999999999998653

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.50  E-value=2.2e-13  Score=107.28  Aligned_cols=106  Identities=17%  Similarity=0.189  Sum_probs=86.1

Q ss_pred             HHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           15 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        15 l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      .....++++|||+|||+|..+..+++. + ..+|+++|++ ++++.|+++++..++.++++++.+|+.+..  +     .
T Consensus        33 ~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~-----~  102 (328)
T 1g6q_1           33 NKDLFKDKIVLDVGCGTGILSMFAAKH-G-AKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVH--L-----P  102 (328)
T ss_dssp             HHHHHTTCEEEEETCTTSHHHHHHHHT-C-CSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSC--C-----S
T ss_pred             hHhhcCCCEEEEecCccHHHHHHHHHC-C-CCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhcc--C-----C
Confidence            345678889999999999999999885 2 4699999999 699999999999998888999999986541  1     1


Q ss_pred             CCceeEEEEeC------CccchHHHHHHHHhccCcCeEEEEe
Q 029764           95 EGSFDYAFVDA------DKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        95 ~~~~D~i~id~------~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      .++||+|+++.      .......++..+.++|+|||.++.+
T Consensus       103 ~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~~  144 (328)
T 1g6q_1          103 FPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPD  144 (328)
T ss_dssp             SSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             CCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEEe
Confidence            36899999873      2234567888888999999999843

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.50  E-value=1.6e-13  Score=108.87  Aligned_cols=108  Identities=16%  Similarity=0.127  Sum_probs=90.1

Q ss_pred             CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029764           21 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  100 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~  100 (188)
                      +.+|||||||+|..+..+++.+| +.+++++|+ +++++.+++++...++.++++++.+|..+..+..      .++||+
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------~~~~D~  251 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHP-QLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFE------GGAADV  251 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCT-TCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGT------TCCEEE
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCC-CCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccC------CCCccE
Confidence            78999999999999999999987 789999999 8999999999998888888999999986542111      357999


Q ss_pred             EEEeCCc-----cchHHHHHHHHhccCcCeEEEEeccccCc
Q 029764          101 AFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLWGG  136 (188)
Q Consensus       101 i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  136 (188)
                      |++....     .....+++++.+.|+|||.+++.+...+.
T Consensus       252 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  292 (352)
T 3mcz_A          252 VMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMND  292 (352)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCT
T ss_pred             EEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence            9986422     23467899999999999999998876543

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.50  E-value=4.7e-14  Score=104.50  Aligned_cols=109  Identities=19%  Similarity=0.192  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029764            9 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   88 (188)
Q Consensus         9 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   88 (188)
                      ..++..+ ...++.+|||+|||+|..+..++..   +.+++++|+++++++.+++++.     .+++++.+|+.+..  .
T Consensus        35 ~~~l~~~-~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~--~  103 (220)
T 3hnr_A           35 EDILEDV-VNKSFGNVLEFGVGTGNLTNKLLLA---GRTVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFE--V  103 (220)
T ss_dssp             HHHHHHH-HHTCCSEEEEECCTTSHHHHHHHHT---TCEEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCC--C
T ss_pred             HHHHHHh-hccCCCeEEEeCCCCCHHHHHHHhC---CCeEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcC--C
Confidence            3455544 3447789999999999999999986   5799999999999999998764     46889999986531  1


Q ss_pred             hhcccCCCceeEEEEeCCc---cchH--HHHHHHHhccCcCeEEEEecccc
Q 029764           89 LKYSENEGSFDYAFVDADK---DNYC--NYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        89 ~~~~~~~~~~D~i~id~~~---~~~~--~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                            .++||+|++....   .+..  .+++.+.++|+|||.+++.+..+
T Consensus       104 ------~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  148 (220)
T 3hnr_A          104 ------PTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIF  148 (220)
T ss_dssp             ------CSCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECB
T ss_pred             ------CCCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence                  2789999998532   2222  38899999999999999987554

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.50  E-value=4e-14  Score=107.16  Aligned_cols=98  Identities=10%  Similarity=0.208  Sum_probs=81.3

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   99 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   99 (188)
                      ++.+|||+|||+|..+..+++..+  .+++++|+++++++.+++++.    ..+++++.+|+.+. + +     ..++||
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~-~-~-----~~~~fD  110 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHGA--KKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDI-A-I-----EPDAYN  110 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGGC-C-C-----CTTCEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhhC-C-C-----CCCCeE
Confidence            567999999999999999998732  399999999999999998764    35799999998653 1 1     247899


Q ss_pred             EEEEeCC---ccchHHHHHHHHhccCcCeEEEEe
Q 029764          100 YAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus       100 ~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      +|++...   ..+...+++.+.++|+|||.+++.
T Consensus       111 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  144 (253)
T 3g5l_A          111 VVLSSLALHYIASFDDICKKVYINLKSSGSFIFS  144 (253)
T ss_dssp             EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEE
Confidence            9998753   345688999999999999999986

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.50  E-value=1.9e-14  Score=109.23  Aligned_cols=97  Identities=13%  Similarity=0.193  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHHc-----CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcc
Q 029764            6 PDAGQLMAMLLRLV-----NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   80 (188)
Q Consensus         6 ~~~~~~l~~l~~~~-----~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d   80 (188)
                      +++..++..++...     ++.+|||+|||+|..+..++...+ +.+++++|+++++++.|++++...++.++++++++|
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d  124 (254)
T 2h00_A           46 LNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVP  124 (254)
T ss_dssp             HHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred             HHHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcc
Confidence            56667777766533     456999999999999999988765 679999999999999999999999888789999999


Q ss_pred             hHH-HHHHHhhcccCCCceeEEEEeC
Q 029764           81 ALS-VLDQLLKYSENEGSFDYAFVDA  105 (188)
Q Consensus        81 ~~~-~~~~~~~~~~~~~~~D~i~id~  105 (188)
                      +.+ ....+...  ..++||+|+++.
T Consensus       125 ~~~~~~~~~~~~--~~~~fD~i~~np  148 (254)
T 2h00_A          125 QKTLLMDALKEE--SEIIYDFCMCNP  148 (254)
T ss_dssp             TTCSSTTTSTTC--CSCCBSEEEECC
T ss_pred             hhhhhhhhhhcc--cCCcccEEEECC
Confidence            754 22222100  015899999984

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.50  E-value=8.8e-14  Score=105.92  Aligned_cols=106  Identities=14%  Similarity=0.099  Sum_probs=82.7

Q ss_pred             HHHHHHHHHc-CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029764           10 QLMAMLLRLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   88 (188)
Q Consensus        10 ~~l~~l~~~~-~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   88 (188)
                      .++..+.... ++.+|||+|||+|..+..++..   +.+++++|+++++++.|++++.      +++++++|..+..   
T Consensus        39 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~---  106 (263)
T 3pfg_A           39 DLAALVRRHSPKAASLLDVACGTGMHLRHLADS---FGTVEGLELSADMLAIARRRNP------DAVLHHGDMRDFS---  106 (263)
T ss_dssp             HHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTT---SSEEEEEESCHHHHHHHHHHCT------TSEEEECCTTTCC---
T ss_pred             HHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC------CCEEEECChHHCC---
Confidence            3344444433 4579999999999999999886   4599999999999999998742      6899999986531   


Q ss_pred             hhcccCCCceeEEEEeC-Cc------cchHHHHHHHHhccCcCeEEEEecc
Q 029764           89 LKYSENEGSFDYAFVDA-DK------DNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        89 ~~~~~~~~~~D~i~id~-~~------~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                           ..++||+|++.. ..      .....+++.+.++|+|||.++++..
T Consensus       107 -----~~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~  152 (263)
T 3pfg_A          107 -----LGRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPW  152 (263)
T ss_dssp             -----CSCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred             -----ccCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence                 137899999875 21      2445789999999999999999754

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.49  E-value=2.9e-13  Score=96.39  Aligned_cols=100  Identities=12%  Similarity=0.071  Sum_probs=81.7

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      ...++.+|||+|||+|..+..+++..   .+++++|+++++++.++++      .+++++..+| .    .+     ..+
T Consensus        14 ~~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~------~~~v~~~~~d-~----~~-----~~~   74 (170)
T 3i9f_A           14 FEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEK------FDSVITLSDP-K----EI-----PDN   74 (170)
T ss_dssp             HSSCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHH------CTTSEEESSG-G----GS-----CTT
T ss_pred             CcCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHh------CCCcEEEeCC-C----CC-----CCC
Confidence            45677799999999999999999864   4999999999999999987      2468999988 1    11     247


Q ss_pred             ceeEEEEeC---CccchHHHHHHHHhccCcCeEEEEeccccC
Q 029764           97 SFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLWG  135 (188)
Q Consensus        97 ~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  135 (188)
                      +||+|++..   +..+...+++++.+.|+|||.+++.+....
T Consensus        75 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  116 (170)
T 3i9f_A           75 SVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKE  116 (170)
T ss_dssp             CEEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred             ceEEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCcc
Confidence            899999874   334667899999999999999999875543

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.49  E-value=1.3e-13  Score=104.64  Aligned_cols=101  Identities=22%  Similarity=0.237  Sum_probs=82.1

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..++.+|||+|||+|..+..++..   +.+++++|+++++++.+++++ . +...+++++++|+.+. + +     ..++
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~-~-~~~~~~~~~~~d~~~~-~-~-----~~~~  104 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIAR---GYRYIALDADAAMLEVFRQKI-A-GVDRKVQVVQADARAI-P-L-----PDES  104 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTT---TCEEEEEESCHHHHHHHHHHT-T-TSCTTEEEEESCTTSC-C-S-----CTTC
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHh-h-ccCCceEEEEcccccC-C-C-----CCCC
Confidence            356779999999999999999985   579999999999999999987 2 2345799999998643 1 1     2468


Q ss_pred             eeEEEEeCC---ccchHHHHHHHHhccCcCeEEEEe
Q 029764           98 FDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        98 ~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ||+|++...   ..+...+++++.++|+|||.+++.
T Consensus       105 fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          105 VHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             EEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence            999998753   235678999999999999999886

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.49  E-value=5.5e-14  Score=106.57  Aligned_cols=99  Identities=19%  Similarity=0.148  Sum_probs=82.5

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..++.+|||+|||+|..+..++...+ +.+++++|+++.+++.++++      .++++++.+|+.+..  .      .++
T Consensus        31 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~------~~~~~~~~~d~~~~~--~------~~~   95 (259)
T 2p35_A           31 LERVLNGYDLGCGPGNSTELLTDRYG-VNVITGIDSDDDMLEKAADR------LPNTNFGKADLATWK--P------AQK   95 (259)
T ss_dssp             CSCCSSEEEETCTTTHHHHHHHHHHC-TTSEEEEESCHHHHHHHHHH------STTSEEEECCTTTCC--C------SSC
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHh------CCCcEEEECChhhcC--c------cCC
Confidence            34567999999999999999999876 78999999999999999987      246899999986532  1      478


Q ss_pred             eeEEEEeCC---ccchHHHHHHHHhccCcCeEEEEec
Q 029764           98 FDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        98 ~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      ||+|++...   ..+...+++++.++|+|||.+++..
T Consensus        96 fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  132 (259)
T 2p35_A           96 ADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQM  132 (259)
T ss_dssp             EEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             cCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEe
Confidence            999998753   3456788999999999999999865

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.48  E-value=8.4e-14  Score=103.84  Aligned_cols=105  Identities=23%  Similarity=0.300  Sum_probs=84.6

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCC----CcEEEEEcchHHHHHHHhhccc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD----HKINFIESEALSVLDQLLKYSE   93 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~   93 (188)
                      ..++.+|||+|||+|..+..++..   +.+++++|+++.+++.+++++...++.    .+++++.+|..+..  +     
T Consensus        28 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~-----   97 (235)
T 3sm3_A           28 LQEDDEILDIGCGSGKISLELASK---GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLS--F-----   97 (235)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCC--S-----
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccC--C-----
Confidence            446779999999999999999986   569999999999999999998877652    36899999986431  1     


Q ss_pred             CCCceeEEEEeCCc---cchH---HHHHHHHhccCcCeEEEEecc
Q 029764           94 NEGSFDYAFVDADK---DNYC---NYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        94 ~~~~~D~i~id~~~---~~~~---~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      ..++||+|++....   .+..   .+++.+.++|+|||.+++.+.
T Consensus        98 ~~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  142 (235)
T 3sm3_A           98 HDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF  142 (235)
T ss_dssp             CTTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence            24789999987532   2223   789999999999999999754

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.48  E-value=5.1e-14  Score=109.31  Aligned_cols=104  Identities=11%  Similarity=0.119  Sum_probs=84.1

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCC--CcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD--HKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ++.+|||+|||+|..+..++..   +.+|+++|+++.+++.+++++...+..  .+++++++|..+..        ..++
T Consensus        82 ~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~  150 (299)
T 3g2m_A           82 VSGPVLELAAGMGRLTFPFLDL---GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA--------LDKR  150 (299)
T ss_dssp             CCSCEEEETCTTTTTHHHHHTT---TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC--------CSCC
T ss_pred             CCCcEEEEeccCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC--------cCCC
Confidence            3459999999999999999986   568999999999999999998876532  57999999987631        1478


Q ss_pred             eeEEEEeC------CccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           98 FDYAFVDA------DKDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        98 ~D~i~id~------~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      ||+|++..      .......+++.+.++|+|||.+++.....
T Consensus       151 fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  193 (299)
T 3g2m_A          151 FGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMS  193 (299)
T ss_dssp             EEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             cCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecC
Confidence            99998651      12235788999999999999999976544

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.48  E-value=6.2e-14  Score=104.86  Aligned_cols=103  Identities=15%  Similarity=0.107  Sum_probs=78.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCC-chhHHHH---HHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVN-RETYEIG---LPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~-~~~~~~a---~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      .++.+|||||||+|..+..+++..+ +.+|+++|++ +.+++.|   +++....++. ++.++++|+.+. +..     .
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~-~v~~~~~d~~~l-~~~-----~   94 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQ-NTFYIGIDPVKENLFDISKKIIKKPSKGGLS-NVVFVIAAAESL-PFE-----L   94 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCT-TEEEEEECSCCGGGHHHHHHHTSCGGGTCCS-SEEEECCBTTBC-CGG-----G
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHcCCC-CeEEEEcCHHHh-hhh-----c
Confidence            4667999999999999999997655 7899999999 5555555   7777777765 699999998665 221     1


Q ss_pred             CCceeEEEEeCCcc--------chHHHHHHHHhccCcCeEEEE
Q 029764           95 EGSFDYAFVDADKD--------NYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        95 ~~~~D~i~id~~~~--------~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      ...+|.|++.....        ....+++++.++|||||.+++
T Consensus        95 ~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A           95 KNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             TTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             cCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence            36788887764321        134678999999999999998

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.48  E-value=2.3e-13  Score=108.76  Aligned_cols=107  Identities=12%  Similarity=0.140  Sum_probs=89.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .+..+|||+|||+|..+..+++..| +.+++++|+ +++++.+++++...++.+++++..+|..+   .+      ..+|
T Consensus       201 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~---~~------p~~~  269 (369)
T 3gwz_A          201 SGAATAVDIGGGRGSLMAAVLDAFP-GLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE---TI------PDGA  269 (369)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT---CC------CSSC
T ss_pred             ccCcEEEEeCCCccHHHHHHHHHCC-CCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCC---CC------CCCc
Confidence            4567999999999999999999987 789999999 99999999999998888899999999862   11      2389


Q ss_pred             eEEEEeCCc---cc--hHHHHHHHHhccCcCeEEEEeccccCc
Q 029764           99 DYAFVDADK---DN--YCNYHERLMKLLKVGGIAVYDNTLWGG  136 (188)
Q Consensus        99 D~i~id~~~---~~--~~~~~~~~~~~L~~gG~lv~~~~~~~g  136 (188)
                      |+|++....   .+  ...+++++.+.|+|||.+++.+...+.
T Consensus       270 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~  312 (369)
T 3gwz_A          270 DVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDE  312 (369)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCS
T ss_pred             eEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence            999987422   22  236899999999999999998877543

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.48  E-value=1.4e-13  Score=108.40  Aligned_cols=106  Identities=13%  Similarity=0.093  Sum_probs=88.8

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   99 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   99 (188)
                      +..+|||+|||+|..+..+++.+| +.+++++|+ +++++.+++++...++.+++++..+|..+.   +      ..+||
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~------p~~~D  237 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHE-DLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDP---L------PAGAG  237 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC---C------CCSCS
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCC-CCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCC---C------CCCCc
Confidence            357999999999999999999987 789999999 999999999999988888999999998631   1      23899


Q ss_pred             EEEEeCCc---c--chHHHHHHHHhccCcCeEEEEeccccCc
Q 029764          100 YAFVDADK---D--NYCNYHERLMKLLKVGGIAVYDNTLWGG  136 (188)
Q Consensus       100 ~i~id~~~---~--~~~~~~~~~~~~L~~gG~lv~~~~~~~g  136 (188)
                      +|++....   .  ....+++++.+.|+|||.+++.+...+.
T Consensus       238 ~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  279 (332)
T 3i53_A          238 GYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGD  279 (332)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC-
T ss_pred             EEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCC
Confidence            99986421   2  2467899999999999999998877644

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.48  E-value=2.7e-14  Score=106.65  Aligned_cols=102  Identities=14%  Similarity=0.078  Sum_probs=80.4

Q ss_pred             HHHHHHHHH--HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764            9 GQLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   86 (188)
Q Consensus         9 ~~~l~~l~~--~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   86 (188)
                      ..++..++.  ..++.+|||+|||+|..+..++..   +.+|+++|+++.+++.++++      .++++++++|..+.++
T Consensus        35 ~~l~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~d~~~~~~  105 (226)
T 3m33_A           35 ELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQ---AARWAAYDFSPELLKLARAN------APHADVYEWNGKGELP  105 (226)
T ss_dssp             THHHHHHHHHHCCTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHH------CTTSEEEECCSCSSCC
T ss_pred             HHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHh------CCCceEEEcchhhccC
Confidence            344444443  356789999999999999999987   56999999999999999987      2368999999854322


Q ss_pred             HHhhcccC-CCceeEEEEeCCccchHHHHHHHHhccCcCeEEE
Q 029764           87 QLLKYSEN-EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV  128 (188)
Q Consensus        87 ~~~~~~~~-~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv  128 (188)
                       +     . .++||+|++..   +...+++.+.++|+|||.++
T Consensus       106 -~-----~~~~~fD~v~~~~---~~~~~l~~~~~~LkpgG~l~  139 (226)
T 3m33_A          106 -A-----GLGAPFGLIVSRR---GPTSVILRLPELAAPDAHFL  139 (226)
T ss_dssp             -T-----TCCCCEEEEEEES---CCSGGGGGHHHHEEEEEEEE
T ss_pred             -C-----cCCCCEEEEEeCC---CHHHHHHHHHHHcCCCcEEE
Confidence             1     1 46899999973   44567888999999999999

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.47  E-value=9e-13  Score=104.88  Aligned_cols=107  Identities=13%  Similarity=0.088  Sum_probs=88.8

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..++.+|||||||+|..+..+++..+ +.+++++|+ +++++.++++++..++.++++++.+|..+.  .       ...
T Consensus       188 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~-------~~~  256 (359)
T 1x19_A          188 LDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE--S-------YPE  256 (359)
T ss_dssp             CTTCCEEEEESCTTCHHHHHHHHHCT-TCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTS--C-------CCC
T ss_pred             CCCCCEEEEECCcccHHHHHHHHHCC-CCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccC--C-------CCC
Confidence            34667999999999999999999987 789999999 999999999999988888899999998653  1       234


Q ss_pred             eeEEEEeCCc---c--chHHHHHHHHhccCcCeEEEEeccccC
Q 029764           98 FDYAFVDADK---D--NYCNYHERLMKLLKVGGIAVYDNTLWG  135 (188)
Q Consensus        98 ~D~i~id~~~---~--~~~~~~~~~~~~L~~gG~lv~~~~~~~  135 (188)
                      +|+|++....   .  ....+++++.+.|+|||.+++.+...+
T Consensus       257 ~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~  299 (359)
T 1x19_A          257 ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVID  299 (359)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCC
T ss_pred             CCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccC
Confidence            5999987432   2  256789999999999999988775543

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.47  E-value=7.5e-13  Score=94.69  Aligned_cols=105  Identities=16%  Similarity=0.177  Sum_probs=81.4

Q ss_pred             CCcHHHHHHHHHHHHH--cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcc
Q 029764            3 GTAPDAGQLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   80 (188)
Q Consensus         3 ~~~~~~~~~l~~l~~~--~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d   80 (188)
                      ...+++..++.. +..  .++.+|||+|||+|..+..+++.   . +++++|+++.+++.          .++++++++|
T Consensus         5 ~P~~~~~~l~~~-l~~~~~~~~~vLD~GcG~G~~~~~l~~~---~-~v~gvD~s~~~~~~----------~~~~~~~~~d   69 (170)
T 3q87_B            5 EPGEDTYTLMDA-LEREGLEMKIVLDLGTSTGVITEQLRKR---N-TVVSTDLNIRALES----------HRGGNLVRAD   69 (170)
T ss_dssp             CCCHHHHHHHHH-HHHHTCCSCEEEEETCTTCHHHHHHTTT---S-EEEEEESCHHHHHT----------CSSSCEEECS
T ss_pred             CcCccHHHHHHH-HHhhcCCCCeEEEeccCccHHHHHHHhc---C-cEEEEECCHHHHhc----------ccCCeEEECC
Confidence            345777777777 444  67789999999999999999885   4 99999999999886          3468899999


Q ss_pred             hHHHHHHHhhcccCCCceeEEEEeCCcc------------chHHHHHHHHhccCcCeEEEEec
Q 029764           81 ALSVLDQLLKYSENEGSFDYAFVDADKD------------NYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~D~i~id~~~~------------~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      +.+..+        .++||+|+++....            ....+++.+.+.+ |||.+++..
T Consensus        70 ~~~~~~--------~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~  123 (170)
T 3q87_B           70 LLCSIN--------QESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLV  123 (170)
T ss_dssp             TTTTBC--------GGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEE
T ss_pred             hhhhcc--------cCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEE
Confidence            876321        36899999975322            2356778888888 999998854

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.47  E-value=3.2e-13  Score=101.34  Aligned_cols=107  Identities=21%  Similarity=0.288  Sum_probs=84.2

Q ss_pred             HHHHHHHHH-cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029764           10 QLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   88 (188)
Q Consensus        10 ~~l~~l~~~-~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   88 (188)
                      .++..+... .++.+|||+|||+|..+..+++.    .+++++|+++++++.+++++...+  .+++++++|..+..  +
T Consensus        22 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~--~   93 (243)
T 3d2l_A           22 EWVAWVLEQVEPGKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDMRELE--L   93 (243)
T ss_dssp             HHHHHHHHHSCTTCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCGGGCC--C
T ss_pred             HHHHHHHHHcCCCCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcChhhcC--C
Confidence            344444443 34579999999999999998875    599999999999999999988765  46899999986531  1


Q ss_pred             hhcccCCCceeEEEEeC-C------ccchHHHHHHHHhccCcCeEEEEe
Q 029764           89 LKYSENEGSFDYAFVDA-D------KDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        89 ~~~~~~~~~~D~i~id~-~------~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                            .++||+|++.. .      ......+++.+.++|+|||.++++
T Consensus        94 ------~~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  136 (243)
T 3d2l_A           94 ------PEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFD  136 (243)
T ss_dssp             ------SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ------CCCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence                  36899999864 1      134567889999999999999984

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.47  E-value=3.5e-13  Score=105.00  Aligned_cols=107  Identities=18%  Similarity=0.199  Sum_probs=76.6

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCC-----cEEEEEcchH----H-HHHHHh
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-----KINFIESEAL----S-VLDQLL   89 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-----~~~~~~~d~~----~-~~~~~~   89 (188)
                      ++.+|||+|||+|..+..++..  ...+|+++|+++++++.|++.....+...     ++++.+.|..    . .++...
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~  125 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYG--EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF  125 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred             CCCeEEEEecCCcHhHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc
Confidence            3579999999999755555543  14699999999999999999887665321     2567777662    1 122111


Q ss_pred             hcccCCCceeEEEEeCC------ccchHHHHHHHHhccCcCeEEEEecc
Q 029764           90 KYSENEGSFDYAFVDAD------KDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        90 ~~~~~~~~~D~i~id~~------~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                          ..++||+|++...      ..+...+++++.++|||||++++...
T Consensus       126 ----~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~  170 (302)
T 2vdw_A          126 ----YFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM  170 (302)
T ss_dssp             ----CSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ----cCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence                2468999987531      13457899999999999999998654

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.46  E-value=1.1e-13  Score=103.78  Aligned_cols=107  Identities=14%  Similarity=0.214  Sum_probs=83.8

Q ss_pred             HHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhc
Q 029764           12 MAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY   91 (188)
Q Consensus        12 l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   91 (188)
                      +..++...++.+|||+|||+|..+..++...  ..+++++|+++++++.++++...    .+++++++|..+..  +   
T Consensus        35 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~--~---  103 (243)
T 3bkw_A           35 LRAMLPEVGGLRIVDLGCGFGWFCRWAHEHG--ASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKLH--L---  103 (243)
T ss_dssp             HHHHSCCCTTCEEEEETCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGCC--C---
T ss_pred             HHHhccccCCCEEEEEcCcCCHHHHHHHHCC--CCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhcc--C---
Confidence            4444444567899999999999999998862  23999999999999999887532    36899999986531  1   


Q ss_pred             ccCCCceeEEEEeCC---ccchHHHHHHHHhccCcCeEEEEec
Q 029764           92 SENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        92 ~~~~~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                        ..++||+|++...   ..+...+++.+.++|+|||.+++..
T Consensus       104 --~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  144 (243)
T 3bkw_A          104 --PQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFST  144 (243)
T ss_dssp             --CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --CCCCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEe
Confidence              1478999998753   3456789999999999999999864

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.46  E-value=2.6e-13  Score=107.71  Aligned_cols=102  Identities=16%  Similarity=0.168  Sum_probs=83.6

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..++.+|||||||+|..+..+++. + ..+|+++|+++ +++.|+++++..++.++++++.+|..+.  .+      .++
T Consensus        48 ~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~--~~------~~~  116 (348)
T 2y1w_A           48 DFKDKIVLDVGCGSGILSFFAAQA-G-ARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEV--SL------PEQ  116 (348)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTC--CC------SSC
T ss_pred             cCCcCEEEEcCCCccHHHHHHHhC-C-CCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhC--CC------CCc
Confidence            457789999999999999999885 2 56999999996 8899999999989888899999998653  11      368


Q ss_pred             eeEEEEeCC-----ccchHHHHHHHHhccCcCeEEEEe
Q 029764           98 FDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        98 ~D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ||+|++...     .......+..+.++|+|||.+++.
T Consensus       117 ~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          117 VDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             EEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred             eeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence            999998742     234567778888999999999854

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.46  E-value=1.4e-13  Score=101.39  Aligned_cols=100  Identities=16%  Similarity=0.092  Sum_probs=80.6

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      ...++.+|||+|||+|..+..++..   +.+++++|+++.+++.+++++       ++.++.+|..+..        ..+
T Consensus        40 ~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~~--------~~~  101 (211)
T 3e23_A           40 ELPAGAKILELGCGAGYQAEAMLAA---GFDVDATDGSPELAAEASRRL-------GRPVRTMLFHQLD--------AID  101 (211)
T ss_dssp             TSCTTCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHH-------TSCCEECCGGGCC--------CCS
T ss_pred             hcCCCCcEEEECCCCCHHHHHHHHc---CCeEEEECCCHHHHHHHHHhc-------CCceEEeeeccCC--------CCC
Confidence            3456779999999999999999986   569999999999999999886       3567788876542        157


Q ss_pred             ceeEEEEeCCc-----cchHHHHHHHHhccCcCeEEEEecccc
Q 029764           97 SFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        97 ~~D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      +||+|++....     .....+++.+.++|+|||.+++.....
T Consensus       102 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  144 (211)
T 3e23_A          102 AYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSG  144 (211)
T ss_dssp             CEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             cEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCC
Confidence            99999987532     255688999999999999999975443

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.46  E-value=6e-14  Score=106.92  Aligned_cols=110  Identities=14%  Similarity=0.063  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029764            6 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   85 (188)
Q Consensus         6 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   85 (188)
                      +...+.+...+...++.+|||+|||+|..+..++.  + +.+++++|+++.+++.++++.       +++++++|+.+. 
T Consensus        20 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~--~-~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~~-   88 (261)
T 3ege_A           20 IRIVNAIINLLNLPKGSVIADIGAGTGGYSVALAN--Q-GLFVYAVEPSIVMRQQAVVHP-------QVEWFTGYAENL-   88 (261)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT--T-TCEEEEECSCHHHHHSSCCCT-------TEEEECCCTTSC-
T ss_pred             HHHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh--C-CCEEEEEeCCHHHHHHHHhcc-------CCEEEECchhhC-
Confidence            34444444444556788999999999999999997  3 789999999999888766542       699999998653 


Q ss_pred             HHHhhcccCCCceeEEEEeC---CccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           86 DQLLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        86 ~~~~~~~~~~~~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      + +     ..++||+|++..   +..+...+++++.++|| ||.+++.+..
T Consensus        89 ~-~-----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~  132 (261)
T 3ege_A           89 A-L-----PDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFD  132 (261)
T ss_dssp             C-S-----CTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEEC
T ss_pred             C-C-----CCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcC
Confidence            1 1     247899999875   33567889999999999 9977765543

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.46  E-value=3.1e-13  Score=106.47  Aligned_cols=103  Identities=9%  Similarity=0.054  Sum_probs=86.8

Q ss_pred             CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029764           22 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  101 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i  101 (188)
                      .+|||+|||+|..+..+++..+ +.+++++|+ +++++.+++++...++.++++++.+|..+.   +      .++||+|
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~------~~~~D~v  237 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEP-SARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQE---V------PSNGDIY  237 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCT-TCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTC---C------CSSCSEE
T ss_pred             CEEEEeCCCchHHHHHHHHHCC-CCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCC---C------CCCCCEE
Confidence            7999999999999999999887 789999999 999999999988777777899999998651   2      3579999


Q ss_pred             EEeCCc---c--chHHHHHHHHhccCcCeEEEEeccccC
Q 029764          102 FVDADK---D--NYCNYHERLMKLLKVGGIAVYDNTLWG  135 (188)
Q Consensus       102 ~id~~~---~--~~~~~~~~~~~~L~~gG~lv~~~~~~~  135 (188)
                      ++....   .  ....+++++.+.|+|||.+++.+...+
T Consensus       238 ~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~  276 (334)
T 2ip2_A          238 LLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTIS  276 (334)
T ss_dssp             EEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBC
T ss_pred             EEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence            987532   1  234789999999999999999877653

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.45  E-value=1.9e-13  Score=103.30  Aligned_cols=103  Identities=9%  Similarity=0.132  Sum_probs=83.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++.+|||+|||+|..+..++...  ..+++++|+++.+++.+++++...   .+++++++|..+. + +     ..++|
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~-~-~-----~~~~f  159 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETA-T-L-----PPNTY  159 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGC-C-C-----CSSCE
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHC-C-C-----CCCCe
Confidence            456799999999999999988764  358999999999999999987543   4799999998653 1 1     24689


Q ss_pred             eEEEEeCCc-----cchHHHHHHHHhccCcCeEEEEeccc
Q 029764           99 DYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        99 D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      |+|++....     .....+++.+.++|+|||.+++.+..
T Consensus       160 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  199 (254)
T 1xtp_A          160 DLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENC  199 (254)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             EEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence            999987532     33567899999999999999997643

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.45  E-value=1.2e-12  Score=104.63  Aligned_cols=123  Identities=13%  Similarity=0.121  Sum_probs=88.0

Q ss_pred             CCcHHHH-HHHHHHHHHc--CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc
Q 029764            3 GTAPDAG-QLMAMLLRLV--NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   79 (188)
Q Consensus         3 ~~~~~~~-~~l~~l~~~~--~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~   79 (188)
                      ++.+... ++..++....  .+.+|||+|||+|..++.+|+.   ..+|+++|+++++++.|++|++.+++. +++++.+
T Consensus       193 Q~n~~~~~~l~~~~~~~~~~~~~~vLDl~cG~G~~~l~la~~---~~~V~gvd~~~~ai~~a~~n~~~ng~~-~v~~~~~  268 (369)
T 3bt7_A          193 QPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARN---FDRVLATEIAKPSVAAAQYNIAANHID-NVQIIRM  268 (369)
T ss_dssp             CSBHHHHHHHHHHHHHHTTTCCSEEEEESCTTSHHHHHHGGG---SSEEEEECCCHHHHHHHHHHHHHTTCC-SEEEECC
T ss_pred             cCCHHHHHHHHHHHHHHhhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEC
Confidence            3444443 4444444433  3578999999999999999985   459999999999999999999998874 7999999


Q ss_pred             chHHHHHHHhhcc---------cCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764           80 EALSVLDQLLKYS---------ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        80 d~~~~~~~~~~~~---------~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      |+.+.++.+....         ....+||+|++|.+...   ..+.+.+.|+++|.+++...
T Consensus       269 d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g---~~~~~~~~l~~~g~ivyvsc  327 (369)
T 3bt7_A          269 AAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG---LDSETEKMVQAYPRILYISC  327 (369)
T ss_dssp             CSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTTC---CCHHHHHHHTTSSEEEEEES
T ss_pred             CHHHHHHHHhhccccccccccccccCCCCEEEECcCccc---cHHHHHHHHhCCCEEEEEEC
Confidence            9988876553110         00037999999975432   23345556668887776543

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.45  E-value=2.2e-13  Score=108.35  Aligned_cols=104  Identities=15%  Similarity=0.195  Sum_probs=86.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++.+|||+|||+|..+..+++..+ +.+++++|+ +++++.+++++...++.++++++.+|..+.   +      ...|
T Consensus       182 ~~~~~vLDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~------~~~~  250 (360)
T 1tw3_A          182 TNVRHVLDVGGGKGGFAAAIARRAP-HVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP---L------PRKA  250 (360)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC---C------SSCE
T ss_pred             ccCcEEEEeCCcCcHHHHHHHHhCC-CCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCC---C------CCCc
Confidence            4567999999999999999999886 789999999 999999999999988877899999998642   1      2359


Q ss_pred             eEEEEeCCcc-----chHHHHHHHHhccCcCeEEEEeccc
Q 029764           99 DYAFVDADKD-----NYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        99 D~i~id~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      |+|++.....     ....+++++.+.|+|||.+++.+..
T Consensus       251 D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          251 DAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             cEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            9999875321     2247899999999999999987766

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.45  E-value=5.4e-13  Score=106.58  Aligned_cols=105  Identities=14%  Similarity=0.259  Sum_probs=84.7

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      ...++++|||||||+|..+++.|++-  ..+|++||.++ ++..|+++++.+++.++++++++++.+.  .+      .+
T Consensus        80 ~~~~~k~VLDvG~GtGiLs~~Aa~aG--A~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~--~l------pe  148 (376)
T 4hc4_A           80 AALRGKTVLDVGAGTGILSIFCAQAG--ARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETV--EL------PE  148 (376)
T ss_dssp             HHHTTCEEEEETCTTSHHHHHHHHTT--CSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTC--CC------SS
T ss_pred             HhcCCCEEEEeCCCccHHHHHHHHhC--CCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeee--cC------Cc
Confidence            35678999999999999998888763  35899999985 8999999999999999999999998764  22      46


Q ss_pred             ceeEEEEeC------CccchHHHHHHHHhccCcCeEEEEecc
Q 029764           97 SFDYAFVDA------DKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        97 ~~D~i~id~------~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      ++|+|+...      .......++....++|+|||.++.+..
T Consensus       149 ~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~~a  190 (376)
T 4hc4_A          149 QVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPASA  190 (376)
T ss_dssp             CEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESCEE
T ss_pred             cccEEEeecccccccccchhhhHHHHHHhhCCCCceECCccc
Confidence            899998742      223456677777799999999886543

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.45  E-value=3.6e-13  Score=107.60  Aligned_cols=103  Identities=16%  Similarity=0.167  Sum_probs=86.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++.+|||+|||+|..+..+++..+ +.+++++|+ +++++.+++++...++.++++++.+|..+.   +      ...|
T Consensus       181 ~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~------~~~~  249 (374)
T 1qzz_A          181 SAVRHVLDVGGGNGGMLAAIALRAP-HLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP---L------PVTA  249 (374)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC---C------SCCE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCC-CCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCc---C------CCCC
Confidence            4567999999999999999999886 789999999 999999999999888887899999998642   1      2359


Q ss_pred             eEEEEeCCc---c--chHHHHHHHHhccCcCeEEEEecc
Q 029764           99 DYAFVDADK---D--NYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        99 D~i~id~~~---~--~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      |+|++....   .  ....+++++.+.|+|||.+++.+.
T Consensus       250 D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          250 DVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            999987532   1  224789999999999999988776

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.45  E-value=1.6e-13  Score=105.46  Aligned_cols=100  Identities=17%  Similarity=0.127  Sum_probs=81.7

Q ss_pred             HHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764           16 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      +...++.+|||+|||+|..+..++.  + +.+++++|+++.+++.+++++      +++.+..+|+.+. + +      .
T Consensus        53 l~~~~~~~vLDiGcG~G~~~~~l~~--~-~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~-~-~------~  115 (279)
T 3ccf_A           53 LNPQPGEFILDLGCGTGQLTEKIAQ--S-GAEVLGTDNAATMIEKARQNY------PHLHFDVADARNF-R-V------D  115 (279)
T ss_dssp             HCCCTTCEEEEETCTTSHHHHHHHH--T-TCEEEEEESCHHHHHHHHHHC------TTSCEEECCTTTC-C-C------S
T ss_pred             hCCCCCCEEEEecCCCCHHHHHHHh--C-CCeEEEEECCHHHHHHHHhhC------CCCEEEECChhhC-C-c------C
Confidence            3445678999999999999999998  3 789999999999999998864      3588899998652 1 1      3


Q ss_pred             CceeEEEEeCC---ccchHHHHHHHHhccCcCeEEEEecc
Q 029764           96 GSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        96 ~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      ++||+|++...   ..+...+++++.++|+|||.+++...
T Consensus       116 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~  155 (279)
T 3ccf_A          116 KPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFG  155 (279)
T ss_dssp             SCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEec
Confidence            68999998753   24567899999999999999998643

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.45  E-value=6.1e-13  Score=106.53  Aligned_cols=108  Identities=23%  Similarity=0.243  Sum_probs=86.4

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029764            5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   84 (188)
Q Consensus         5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   84 (188)
                      .+..+..|..++ ..++.+|||+|||+|..++.++...+ .++|+++|+++.+++.|+++++..++.+++++.++|+.+.
T Consensus       203 ~~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~-~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~  280 (373)
T 3tm4_A          203 KASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRY-SGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQL  280 (373)
T ss_dssp             CHHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTC-CSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGG
T ss_pred             cHHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhC
Confidence            455666666666 66778999999999999999998754 5699999999999999999999999877899999999775


Q ss_pred             HHHHhhcccCCCceeEEEEeCCc-------c----chHHHHHHHHhcc
Q 029764           85 LDQLLKYSENEGSFDYAFVDADK-------D----NYCNYHERLMKLL  121 (188)
Q Consensus        85 ~~~~~~~~~~~~~~D~i~id~~~-------~----~~~~~~~~~~~~L  121 (188)
                      ..       ..++||+|+++.+.       .    .+..+++.+.++|
T Consensus       281 ~~-------~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l  321 (373)
T 3tm4_A          281 SQ-------YVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL  321 (373)
T ss_dssp             GG-------TCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE
T ss_pred             Cc-------ccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc
Confidence            21       14789999998531       1    1356777888878

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.44  E-value=1.4e-12  Score=101.81  Aligned_cols=119  Identities=18%  Similarity=0.160  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029764            9 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   88 (188)
Q Consensus         9 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   88 (188)
                      ..++..++...++.+|||+|||+|..+..+|..+...++|+++|+++++++.++++++++++. +++++++|+.+.....
T Consensus        91 s~l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~  169 (309)
T 2b9e_A           91 SCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAVSPSD  169 (309)
T ss_dssp             GGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGSCTTC
T ss_pred             HHHHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCChHhcCccc
Confidence            445555666777889999999999999999987654689999999999999999999999875 5999999987642211


Q ss_pred             hhcccCCCceeEEEEeCCcc--------------------c-------hHHHHHHHHhccCcCeEEEEeccc
Q 029764           89 LKYSENEGSFDYAFVDADKD--------------------N-------YCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        89 ~~~~~~~~~~D~i~id~~~~--------------------~-------~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      .    ...+||.|++|.+..                    .       ..++++.++++++ ||.||.....
T Consensus       170 ~----~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs  236 (309)
T 2b9e_A          170 P----RYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCS  236 (309)
T ss_dssp             G----GGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESC
T ss_pred             c----ccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCC
Confidence            0    015799999984320                    1       0134666677786 9998876544

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.44  E-value=7.8e-13  Score=105.89  Aligned_cols=103  Identities=14%  Similarity=0.151  Sum_probs=83.1

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   99 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   99 (188)
                      ++++|||+| |+|..+..++...+ ..+|+++|+++++++.|+++++..++. +++++++|+.+.++..     ..++||
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~-~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~-----~~~~fD  243 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGL-PKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDY-----ALHKFD  243 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTC-CSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTT-----TSSCBS
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhh-----ccCCcc
Confidence            578999999 99999999988754 579999999999999999999998876 7999999987632210     035899


Q ss_pred             EEEEeCCc--cchHHHHHHHHhccCcCe-EEEEe
Q 029764          100 YAFVDADK--DNYCNYHERLMKLLKVGG-IAVYD  130 (188)
Q Consensus       100 ~i~id~~~--~~~~~~~~~~~~~L~~gG-~lv~~  130 (188)
                      +|+++...  .....+++.+.+.|+||| ++++.
T Consensus       244 ~Vi~~~p~~~~~~~~~l~~~~~~LkpgG~~~~~~  277 (373)
T 2qm3_A          244 TFITDPPETLEAIRAFVGRGIATLKGPRCAGYFG  277 (373)
T ss_dssp             EEEECCCSSHHHHHHHHHHHHHTBCSTTCEEEEE
T ss_pred             EEEECCCCchHHHHHHHHHHHHHcccCCeEEEEE
Confidence            99998632  234678899999999999 43443

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.44  E-value=3.6e-13  Score=101.04  Aligned_cols=101  Identities=14%  Similarity=0.185  Sum_probs=82.3

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..++.+|||+|||+|..+..++..   +.+++++|+++.+++.++++.    ...+++++++|..+..  +     ..++
T Consensus        51 ~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~d~~~~~--~-----~~~~  116 (242)
T 3l8d_A           51 VKKEAEVLDVGCGDGYGTYKLSRT---GYKAVGVDISEVMIQKGKERG----EGPDLSFIKGDLSSLP--F-----ENEQ  116 (242)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHTTT----CBTTEEEEECBTTBCS--S-----CTTC
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhc----ccCCceEEEcchhcCC--C-----CCCC
Confidence            345679999999999999999986   569999999999999998764    2357999999986531  1     2478


Q ss_pred             eeEEEEeC---CccchHHHHHHHHhccCcCeEEEEecc
Q 029764           98 FDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        98 ~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      ||+|++..   +..+...+++.+.++|+|||.+++...
T Consensus       117 fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~  154 (242)
T 3l8d_A          117 FEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAIL  154 (242)
T ss_dssp             EEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEc
Confidence            99999874   345667899999999999999999763

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.44  E-value=1.6e-12  Score=99.92  Aligned_cols=110  Identities=9%  Similarity=0.036  Sum_probs=83.2

Q ss_pred             CCCEEEEEcccc---hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH-----hhc
Q 029764           20 NAKKTIEIGVFT---GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL-----LKY   91 (188)
Q Consensus        20 ~~~~vLeiG~g~---G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~~~   91 (188)
                      ...+|||||||+   |..+..+++..+ +.+|+++|++|.+++.|++++..   .++++++.+|..+....+     ...
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p-~~~v~~vD~sp~~l~~Ar~~~~~---~~~v~~~~~D~~~~~~~~~~~~~~~~  152 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNP-DARVVYVDIDPMVLTHGRALLAK---DPNTAVFTADVRDPEYILNHPDVRRM  152 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCT-TCEEEEEESSHHHHHHHHHHHTT---CTTEEEEECCTTCHHHHHHSHHHHHH
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCC-CCEEEEEECChHHHHHHHHhcCC---CCCeEEEEeeCCCchhhhccchhhcc
Confidence            447999999999   988777766665 78999999999999999998743   347999999986531100     000


Q ss_pred             ccCCCceeEEEEeCC---cc--chHHHHHHHHhccCcCeEEEEecccc
Q 029764           92 SENEGSFDYAFVDAD---KD--NYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        92 ~~~~~~~D~i~id~~---~~--~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                       .+..+||+|++...   ..  ....+++++.+.|+|||.+++.+...
T Consensus       153 -~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~  199 (274)
T 2qe6_A          153 -IDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD  199 (274)
T ss_dssp             -CCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred             -CCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence             12358999998642   12  36789999999999999999987654

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.44  E-value=1.1e-12  Score=101.47  Aligned_cols=109  Identities=12%  Similarity=0.100  Sum_probs=76.9

Q ss_pred             CCCEEEEEcccchHHHHHHH----hhCCCCCEE--EEEeCCchhHHHHHHHHHhc-CCCCcEE--EEEcchHHHHHHHhh
Q 029764           20 NAKKTIEIGVFTGYSLLLTA----LTIPEDGQI--TAIDVNRETYEIGLPIIKKA-GVDHKIN--FIESEALSVLDQLLK   90 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la----~~~~~~~~v--~~iD~~~~~~~~a~~~~~~~-~~~~~~~--~~~~d~~~~~~~~~~   90 (188)
                      ++.+|||||||+|..+..++    ...+ +.++  +++|+++++++.|+++++.. ++ .++.  +..+++.+....+..
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~-~~~v~~~~vD~S~~ml~~a~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~  129 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYP-GVCINNEVVEPSAEQIAKYKELVAKTSNL-ENVKFAWHKETSSEYQSRMLE  129 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHST-TCEEEEEEECSCHHHHHHHHHHHHTCSSC-TTEEEEEECSCHHHHHHHHHT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCC-CceeeEEEEeCCHHHHHHHHHHHHhccCC-CcceEEEEecchhhhhhhhcc
Confidence            45699999999998765443    3333 5544  99999999999999988654 33 3344  456666554322110


Q ss_pred             cccCCCceeEEEEeC---CccchHHHHHHHHhccCcCeEEEEec
Q 029764           91 YSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        91 ~~~~~~~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                       ....++||+|++..   +..+....++++.++|||||.+++..
T Consensus       130 -~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~  172 (292)
T 2aot_A          130 -KKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIV  172 (292)
T ss_dssp             -TTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             -ccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEE
Confidence             00247899999874   34567889999999999999999853

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.43  E-value=3.5e-13  Score=102.75  Aligned_cols=103  Identities=14%  Similarity=0.144  Sum_probs=74.6

Q ss_pred             HHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH-HHHHHhhccc
Q 029764           15 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS-VLDQLLKYSE   93 (188)
Q Consensus        15 l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~   93 (188)
                      .+...++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|++++...    .+..-..+... ....+     
T Consensus        40 ~l~l~~g~~VLDlGcGtG~~a~~La~~---g~~V~gvD~S~~ml~~Ar~~~~~~----~v~~~~~~~~~~~~~~~-----  107 (261)
T 3iv6_A           40 LENIVPGSTVAVIGASTRFLIEKALER---GASVTVFDFSQRMCDDLAEALADR----CVTIDLLDITAEIPKEL-----  107 (261)
T ss_dssp             TTTCCTTCEEEEECTTCHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTSSS----CCEEEECCTTSCCCGGG-----
T ss_pred             hcCCCCcCEEEEEeCcchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHhc----cceeeeeeccccccccc-----
Confidence            334567789999999999999999985   569999999999999999987543    12222222210 00111     


Q ss_pred             CCCceeEEEEeCCc-----cchHHHHHHHHhccCcCeEEEEec
Q 029764           94 NEGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        94 ~~~~~D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                       .++||+|+++...     ......+..+.++| |||.+++..
T Consensus       108 -~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~  148 (261)
T 3iv6_A          108 -AGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASV  148 (261)
T ss_dssp             -TTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEE
T ss_pred             -CCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEe
Confidence             3689999998532     33456788888999 999999863

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.43  E-value=3.1e-13  Score=107.08  Aligned_cols=101  Identities=19%  Similarity=0.208  Sum_probs=83.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++.+|||+|||+|..+..+++..+ ..+++++|+++.+++.+++++...++.  .+++.+|..+..         .++|
T Consensus       195 ~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~--~~~~~~d~~~~~---------~~~f  262 (343)
T 2pjd_A          195 HTKGKVLDVGCGAGVLSVAFARHSP-KIRLTLCDVSAPAVEASRATLAANGVE--GEVFASNVFSEV---------KGRF  262 (343)
T ss_dssp             TCCSBCCBTTCTTSHHHHHHHHHCT-TCBCEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTC---------CSCE
T ss_pred             CCCCeEEEecCccCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCC--CEEEEccccccc---------cCCe
Confidence            3566999999999999999999875 679999999999999999999887764  567888876431         3689


Q ss_pred             eEEEEeCCcc--------chHHHHHHHHhccCcCeEEEEec
Q 029764           99 DYAFVDADKD--------NYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        99 D~i~id~~~~--------~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      |+|+++....        ....+++.+.++|+|||.+++..
T Consensus       263 D~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  303 (343)
T 2pjd_A          263 DMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVA  303 (343)
T ss_dssp             EEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             eEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence            9999975322        24678899999999999988853

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.43  E-value=5.8e-13  Score=100.29  Aligned_cols=106  Identities=13%  Similarity=0.082  Sum_probs=81.5

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHH-HhhcccCCC
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ-LLKYSENEG   96 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~~~~   96 (188)
                      ..++.+|||+|||+|..+..++...+   +|+++|+++.+++.+++++.    ..+++++++|..+.... ..+.   ..
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~~~---~~  123 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENT----AANISYRLLDGLVPEQAAQIHS---EI  123 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSC----CTTEEEEECCTTCHHHHHHHHH---HH
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCc----ccCceEEECccccccccccccc---cc
Confidence            34567999999999999999999754   89999999999999998762    23699999998764221 1100   13


Q ss_pred             ceeEEEEeCC-----ccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           97 SFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        97 ~~D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      .||+|++...     ......+++++.++|+|||.+++.+..
T Consensus       124 ~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  165 (245)
T 3ggd_A          124 GDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELG  165 (245)
T ss_dssp             CSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred             CccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            5999998742     225678999999999999998776554

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.43  E-value=1.5e-12  Score=100.37  Aligned_cols=115  Identities=17%  Similarity=0.127  Sum_probs=79.7

Q ss_pred             HHHHHHHHHH---HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeC-CchhHHHHHHHH-----HhcCCC----CcE
Q 029764            8 AGQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDV-NRETYEIGLPII-----KKAGVD----HKI   74 (188)
Q Consensus         8 ~~~~l~~l~~---~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~-~~~~~~~a~~~~-----~~~~~~----~~~   74 (188)
                      +..+...+..   ..++++|||+|||+|..++.+++. . ..+|+++|+ ++++++.+++++     +..++.    +++
T Consensus        64 ~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~-~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v  141 (281)
T 3bzb_A           64 ARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLA-G-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASP  141 (281)
T ss_dssp             HHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHT-T-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCC
T ss_pred             HHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHc-C-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCe
Confidence            3344444443   246789999999999999998875 2 359999999 899999999998     555543    467


Q ss_pred             EEEEcchH----HHHHHHhhcccCCCceeEEEE-eC--CccchHHHHHHHHhccC---c--CeEEEE
Q 029764           75 NFIESEAL----SVLDQLLKYSENEGSFDYAFV-DA--DKDNYCNYHERLMKLLK---V--GGIAVY  129 (188)
Q Consensus        75 ~~~~~d~~----~~~~~~~~~~~~~~~~D~i~i-d~--~~~~~~~~~~~~~~~L~---~--gG~lv~  129 (188)
                      ++...+..    +....+     ..++||+|++ |.  +......+++.+.++|+   |  ||.+++
T Consensus       142 ~~~~~~~~~~~~~~~~~~-----~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v  203 (281)
T 3bzb_A          142 KVVPYRWGDSPDSLQRCT-----GLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALV  203 (281)
T ss_dssp             EEEECCTTSCTHHHHHHH-----SCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred             EEEEecCCCccHHHHhhc-----cCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence            87754422    222211     1478999987 42  34557789999999999   9  997655

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.43  E-value=4.9e-13  Score=99.05  Aligned_cols=104  Identities=13%  Similarity=0.089  Sum_probs=77.8

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHH----HHhcCCCCcEEEEEcchHHHHHHHhhcc
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPI----IKKAGVDHKINFIESEALSVLDQLLKYS   92 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~----~~~~~~~~~~~~~~~d~~~~~~~~~~~~   92 (188)
                      ...++.+|||+|||+|..+..++...+ +.+|+++|+++++++.+.++    ....++ ++++++++|+.+. + +    
T Consensus        24 ~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~-~~v~~~~~d~~~l-~-~----   95 (218)
T 3mq2_A           24 RSQYDDVVLDVGTGDGKHPYKVARQNP-SRLVVALDADKSRMEKISAKAAAKPAKGGL-PNLLYLWATAERL-P-P----   95 (218)
T ss_dssp             HTTSSEEEEEESCTTCHHHHHHHHHCT-TEEEEEEESCGGGGHHHHHHHTSCGGGTCC-TTEEEEECCSTTC-C-S----
T ss_pred             hccCCCEEEEecCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhhhhcCC-CceEEEecchhhC-C-C----
Confidence            355677999999999999999999876 78999999999988864332    223444 3699999998763 1 1    


Q ss_pred             cCCCceeEEEEeCCc--------cchHHHHHHHHhccCcCeEEEEe
Q 029764           93 ENEGSFDYAFVDADK--------DNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        93 ~~~~~~D~i~id~~~--------~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                       ..+. |.+++....        .+...+++++.++|||||.+++.
T Consensus        96 -~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  139 (218)
T 3mq2_A           96 -LSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVA  139 (218)
T ss_dssp             -CCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEE
T ss_pred             -CCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEE
Confidence             1234 777755421        12267899999999999999984

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.43  E-value=1.4e-12  Score=105.96  Aligned_cols=114  Identities=20%  Similarity=0.171  Sum_probs=87.9

Q ss_pred             CCcHHHH-HHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch
Q 029764            3 GTAPDAG-QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   81 (188)
Q Consensus         3 ~~~~~~~-~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   81 (188)
                      +..+... .++..+....++.+|||+|||+|..++.+|+.   ..+|+++|+++++++.|+++++.+++.  ++++.+|+
T Consensus       272 q~n~~~~e~l~~~~~~~~~~~~VLDlgcG~G~~sl~la~~---~~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~d~  346 (425)
T 2jjq_A          272 QTNSYQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLAKR---GFNVKGFDSNEFAIEMARRNVEINNVD--AEFEVASD  346 (425)
T ss_dssp             CSBHHHHHHHHHHHHHHCCSSEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCC--EEEEECCT
T ss_pred             ccCHHHHHHHHHHhhccCCCCEEEEeeccchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCc--EEEEECCh
Confidence            3344443 44555555667789999999999999999986   469999999999999999999988875  99999998


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCccchH-HHHHHHHhccCcCeEEEEec
Q 029764           82 LSVLDQLLKYSENEGSFDYAFVDADKDNYC-NYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        82 ~~~~~~~~~~~~~~~~~D~i~id~~~~~~~-~~~~~~~~~L~~gG~lv~~~  131 (188)
                      .+.+         ..+||+|++|.+..... .+++.+ ..|+|+|++++..
T Consensus       347 ~~~~---------~~~fD~Vv~dPPr~g~~~~~~~~l-~~l~p~givyvsc  387 (425)
T 2jjq_A          347 REVS---------VKGFDTVIVDPPRAGLHPRLVKRL-NREKPGVIVYVSC  387 (425)
T ss_dssp             TTCC---------CTTCSEEEECCCTTCSCHHHHHHH-HHHCCSEEEEEES
T ss_pred             HHcC---------ccCCCEEEEcCCccchHHHHHHHH-HhcCCCcEEEEEC
Confidence            7642         13799999997644333 355555 4589999998863

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.42  E-value=3.8e-12  Score=93.38  Aligned_cols=111  Identities=11%  Similarity=0.108  Sum_probs=84.6

Q ss_pred             CcHHHHHHHHHHHH---HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcc
Q 029764            4 TAPDAGQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   80 (188)
Q Consensus         4 ~~~~~~~~l~~l~~---~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d   80 (188)
                      +++...+.+...+.   ..++.+|||+|||+|..+..++...  ..+++++|+++.+++.+++++...++  +++++++|
T Consensus        30 ~~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d  105 (207)
T 1wy7_A           30 TPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLG--AKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGD  105 (207)
T ss_dssp             CCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESC
T ss_pred             CchHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECc
Confidence            44555555544443   3356799999999999999998862  35899999999999999999988776  69999999


Q ss_pred             hHHHHHHHhhcccCCCceeEEEEeCCc-----cchHHHHHHHHhccCcCeEEEEe
Q 029764           81 ALSVLDQLLKYSENEGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      +.+.          ..+||+|+++.+.     .....+++.+.+.+  |+.+++.
T Consensus       106 ~~~~----------~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~~  148 (207)
T 1wy7_A          106 VSEF----------NSRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DVVYSIH  148 (207)
T ss_dssp             GGGC----------CCCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SEEEEEE
T ss_pred             hHHc----------CCCCCEEEEcCCCccccCCchHHHHHHHHHhc--CcEEEEE
Confidence            8763          2589999998642     23357788888887  6666554

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.42  E-value=8.5e-13  Score=103.07  Aligned_cols=108  Identities=13%  Similarity=0.088  Sum_probs=82.2

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcC------CCCcEEEEEcchHHHH--HHHhhc
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG------VDHKINFIESEALSVL--DQLLKY   91 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~------~~~~~~~~~~d~~~~~--~~~~~~   91 (188)
                      ++.+|||+|||+|..+..++.. + ..+++++|+++++++.+++++...+      ...+++++++|..+..  ..+.+ 
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-  110 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKG-R-INKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRD-  110 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSS-
T ss_pred             CCCEEEEECCCCcHHHHHHHhc-C-CCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhccc-
Confidence            6679999999999999998874 2 6799999999999999999887642      2346899999986531  01110 


Q ss_pred             ccCCCceeEEEEeCCc-------cchHHHHHHHHhccCcCeEEEEecc
Q 029764           92 SENEGSFDYAFVDADK-------DNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        92 ~~~~~~~D~i~id~~~-------~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                        ..++||+|++....       .....+++++.++|+|||.+++...
T Consensus       111 --~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  156 (313)
T 3bgv_A          111 --PQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP  156 (313)
T ss_dssp             --TTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             --CCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence              13589999987532       2345789999999999999998644

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.42  E-value=8.6e-13  Score=108.80  Aligned_cols=100  Identities=16%  Similarity=0.185  Sum_probs=82.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++.+|||||||+|..+..+++. + ..+|+++|+++ +++.|++++...++.++++++.+|..+.  .+      .++|
T Consensus       157 ~~~~~VLDiGcGtG~la~~la~~-~-~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~--~~------~~~f  225 (480)
T 3b3j_A          157 FKDKIVLDVGCGSGILSFFAAQA-G-ARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEV--SL------PEQV  225 (480)
T ss_dssp             TTTCEEEEESCSTTHHHHHHHHT-T-CSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTC--CC------SSCE
T ss_pred             cCCCEEEEecCcccHHHHHHHHc-C-CCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhC--cc------CCCe
Confidence            46789999999999999998874 3 57999999998 9999999999999888899999998653  11      3689


Q ss_pred             eEEEEeCC-----ccchHHHHHHHHhccCcCeEEEE
Q 029764           99 DYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        99 D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      |+|++...     .......+..+.++|+|||.+++
T Consensus       226 D~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~  261 (480)
T 3b3j_A          226 DIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP  261 (480)
T ss_dssp             EEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred             EEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence            99998743     13345566777899999999985

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.41  E-value=1e-12  Score=95.02  Aligned_cols=105  Identities=13%  Similarity=0.120  Sum_probs=82.1

Q ss_pred             HHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029764           10 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   89 (188)
Q Consensus        10 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   89 (188)
                      +++..+  ..++.+|||+|||+|..+..++..   +.+++++|+++.+++.+++++      .+++++.+|..+.  .+ 
T Consensus        38 ~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~~~~~~~~a~~~~------~~~~~~~~d~~~~--~~-  103 (195)
T 3cgg_A           38 RLIDAM--APRGAKILDAGCGQGRIGGYLSKQ---GHDVLGTDLDPILIDYAKQDF------PEARWVVGDLSVD--QI-  103 (195)
T ss_dssp             HHHHHH--SCTTCEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHC------TTSEEEECCTTTS--CC-
T ss_pred             HHHHHh--ccCCCeEEEECCCCCHHHHHHHHC---CCcEEEEcCCHHHHHHHHHhC------CCCcEEEcccccC--CC-
Confidence            444444  346779999999999999999986   569999999999999999875      2478899988653  11 


Q ss_pred             hcccCCCceeEEEEeCC-c-----cchHHHHHHHHhccCcCeEEEEecc
Q 029764           90 KYSENEGSFDYAFVDAD-K-----DNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        90 ~~~~~~~~~D~i~id~~-~-----~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                          ..++||+|++... .     .....+++.+.++|+|||.+++...
T Consensus       104 ----~~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~  148 (195)
T 3cgg_A          104 ----SETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFG  148 (195)
T ss_dssp             ----CCCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ----CCCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence                1468999999732 1     2346788999999999999998643

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.41  E-value=1.1e-12  Score=98.06  Aligned_cols=99  Identities=11%  Similarity=0.144  Sum_probs=79.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++.+|||+|||+|..+..+++..   .+++++|+++++++.+++++      ++++++.+|..+..  +      .++|
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~--~------~~~~  101 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEF---GDTAGLELSEDMLTHARKRL------PDATLHQGDMRDFR--L------GRKF  101 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHH---SEEEEEESCHHHHHHHHHHC------TTCEEEECCTTTCC--C------SSCE
T ss_pred             CCCCeEEEecccCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhC------CCCEEEECCHHHcc--c------CCCC
Confidence            466799999999999999999874   39999999999999999864      35889999986531  1      3689


Q ss_pred             eEEEEeCC----c---cchHHHHHHHHhccCcCeEEEEecccc
Q 029764           99 DYAFVDAD----K---DNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        99 D~i~id~~----~---~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      |+|++...    .   .....+++.+.++|+|||.+++.+...
T Consensus       102 D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  144 (239)
T 3bxo_A          102 SAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWF  144 (239)
T ss_dssp             EEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred             cEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence            99995421    1   345678999999999999999986543

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.41  E-value=2.4e-13  Score=100.02  Aligned_cols=103  Identities=10%  Similarity=0.053  Sum_probs=81.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++.+|||+|||+|..+..++...+  .+++++|+++.+++.++++...   .++++++++|+.+.  .+     ..++|
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~~--~~v~~~D~s~~~~~~a~~~~~~---~~~i~~~~~d~~~~--~~-----~~~~f  108 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGGF--PNVTSVDYSSVVVAAMQACYAH---VPQLRWETMDVRKL--DF-----PSASF  108 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTTC--CCEEEEESCHHHHHHHHHHTTT---CTTCEEEECCTTSC--CS-----CSSCE
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcCC--CcEEEEeCCHHHHHHHHHhccc---CCCcEEEEcchhcC--CC-----CCCcc
Confidence            4667999999999999999998633  3899999999999999998754   24689999998653  11     24689


Q ss_pred             eEEEEeCC------------------ccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           99 DYAFVDAD------------------KDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        99 D~i~id~~------------------~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      |+|++...                  ......+++.+.++|+|||.+++.+..
T Consensus       109 D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  161 (215)
T 2pxx_A          109 DVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA  161 (215)
T ss_dssp             EEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             cEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence            99997632                  123467889999999999999986543

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.41  E-value=1.1e-13  Score=105.13  Aligned_cols=110  Identities=20%  Similarity=0.100  Sum_probs=81.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCC----------------------------
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV----------------------------   70 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~----------------------------   70 (188)
                      .++.+|||+|||+|..+..++....  .+|+++|+++.+++.+++++...+.                            
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  132 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL  132 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence            3556899999999999988887521  4899999999999999998765331                            


Q ss_pred             CCcE-EEEEcchHHHHHHHhhcccCCCceeEEEEeCCc-------cchHHHHHHHHhccCcCeEEEEeccc
Q 029764           71 DHKI-NFIESEALSVLDQLLKYSENEGSFDYAFVDADK-------DNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        71 ~~~~-~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~-------~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      ..++ .++++|..+..+. ..  ...++||+|++....       .....+++++.++|+|||.+++.+..
T Consensus       133 ~~~v~~~~~~d~~~~~~~-~~--~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  200 (265)
T 2i62_A          133 RRAIKQVLKCDVTQSQPL-GG--VSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDAL  200 (265)
T ss_dssp             HHHEEEEEECCTTSSSTT-TT--CCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             hhhheeEEEeeeccCCCC-Cc--cccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecC
Confidence            0127 8889988653211 00  012689999987532       25678899999999999999997644

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=99.40  E-value=1.5e-11  Score=93.04  Aligned_cols=148  Identities=15%  Similarity=0.062  Sum_probs=101.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHhh------CCCCCEEEEEeC-----Cch-------------------hHHHHHH-----
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALT------IPEDGQITAIDV-----NRE-------------------TYEIGLP-----   63 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~------~~~~~~v~~iD~-----~~~-------------------~~~~a~~-----   63 (188)
                      .-+..|+|+|+..|.++..++..      .....+++++|.     .+.                   ..+..++     
T Consensus        68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~  147 (257)
T 3tos_A           68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH  147 (257)
T ss_dssp             TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred             CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence            44669999999999999997752      123679999993     221                   0111222     


Q ss_pred             -HHHhcCC-CCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCc-cchHHHHHHHHhccCcCeEEEEeccccCccccC
Q 029764           64 -IIKKAGV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-DNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAV  140 (188)
Q Consensus        64 -~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~-~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~  140 (188)
                       +++..+. .++++++.|++.+.++.+.+. ....++|++++|++. ......++.++++|++||+|+++|..++.    
T Consensus       148 ~~~~~~g~~~~~i~li~G~~~dTL~~~l~~-~~~~~~dlv~ID~D~Y~~t~~~le~~~p~l~~GGvIv~DD~~~~~----  222 (257)
T 3tos_A          148 ECSDFFGHVTQRSVLVEGDVRETVPRYLAE-NPQTVIALAYFDLDLYEPTKAVLEAIRPYLTKGSIVAFDELDNPK----  222 (257)
T ss_dssp             HTTSTTTTSCCSEEEEESCHHHHHHHHHHH-CTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEESSTTCTT----
T ss_pred             hhhhhcCCCCCcEEEEEecHHHHHHHHHHh-CCCCceEEEEEcCcccchHHHHHHHHHHHhCCCcEEEEcCCCCCC----
Confidence             2234555 478999999999999886543 123479999999976 45667899999999999999999975311    


Q ss_pred             CCCCCCCCcccchHHHHHHHHHHhhcCCCeEEEEeecCCceEEE
Q 029764          141 PEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITIC  184 (188)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~G~~~~  184 (188)
                          +    .+ +.+++++|    ....+.....+|...+...+
T Consensus       223 ----w----~G-~~~A~~ef----~~~~~~~i~~~p~~~~~~y~  253 (257)
T 3tos_A          223 ----W----PG-ENIAMRKV----LGLDHAPLRLLPGRPAPAYL  253 (257)
T ss_dssp             ----C----TH-HHHHHHHH----TCTTSSCCEECTTCSCCEEE
T ss_pred             ----C----hH-HHHHHHHH----HhhCCCeEEEccCCCCCEEE
Confidence                1    11 34444444    34457788888888876654

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.40  E-value=7.6e-13  Score=94.14  Aligned_cols=99  Identities=16%  Similarity=0.147  Sum_probs=74.9

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH-----HHHhhcc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL-----DQLLKYS   92 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~~~   92 (188)
                      ..++.+|||+|||+|..+..+++.+.++.+++++|+++ ++..           .+++++.+|..+..     +...   
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----------~~~~~~~~d~~~~~~~~~~~~~~---   84 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----------VGVDFLQGDFRDELVMKALLERV---   84 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----------TTEEEEESCTTSHHHHHHHHHHH---
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----------CcEEEEEcccccchhhhhhhccC---
Confidence            45677999999999999999999864368999999999 6532           46899999986541     1111   


Q ss_pred             cCCCceeEEEEeCCcc---ch-----------HHHHHHHHhccCcCeEEEEecc
Q 029764           93 ENEGSFDYAFVDADKD---NY-----------CNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        93 ~~~~~~D~i~id~~~~---~~-----------~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                       ..++||+|+++....   ..           ..+++.+.++|+|||.+++...
T Consensus        85 -~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  137 (180)
T 1ej0_A           85 -GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF  137 (180)
T ss_dssp             -TTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -CCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence             246899999975321   11           5788999999999999998643

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.40  E-value=3.4e-13  Score=99.32  Aligned_cols=97  Identities=16%  Similarity=0.191  Sum_probs=77.5

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   99 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   99 (188)
                      ++.+|||+|||+|..+..+    . ..+++++|+++++++.+++++      ++++++++|..+. + +     ..++||
T Consensus        36 ~~~~vLdiG~G~G~~~~~l----~-~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~-~-~-----~~~~fD   97 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL----P-YPQKVGVEPSEAMLAVGRRRA------PEATWVRAWGEAL-P-F-----PGESFD   97 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC----C-CSEEEEECCCHHHHHHHHHHC------TTSEEECCCTTSC-C-S-----CSSCEE
T ss_pred             CCCeEEEECCCCCHhHHhC----C-CCeEEEEeCCHHHHHHHHHhC------CCcEEEEcccccC-C-C-----CCCcEE
Confidence            6679999999999988776    1 239999999999999999875      3588899987643 1 1     246899


Q ss_pred             EEEEeCC---ccchHHHHHHHHhccCcCeEEEEecccc
Q 029764          100 YAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus       100 ~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      +|++...   ..+...+++++.++|+|||.+++.....
T Consensus        98 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~  135 (211)
T 2gs9_A           98 VVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEA  135 (211)
T ss_dssp             EEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             EEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCC
Confidence            9998752   3456789999999999999999976543

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.39  E-value=3.1e-12  Score=104.32  Aligned_cols=117  Identities=12%  Similarity=0.128  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHH---cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029764            7 DAGQLMAMLLRL---VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   83 (188)
Q Consensus         7 ~~~~~l~~l~~~---~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   83 (188)
                      .+..++..++..   .++.+|||+|||+|..+..++..   ..+|+++|+++++++.|+++++.+++. +++++++|+.+
T Consensus       270 ~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~f~~~d~~~  345 (433)
T 1uwv_A          270 VNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEE  345 (433)
T ss_dssp             HHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTS
T ss_pred             HHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEECCHHH
Confidence            355555555443   35679999999999999999986   579999999999999999999988876 79999999977


Q ss_pred             HHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           84 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        84 ~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      .++.+..   ..++||+|++|.+.....+.++.+. .++|++++.++.
T Consensus       346 ~l~~~~~---~~~~fD~Vv~dPPr~g~~~~~~~l~-~~~p~~ivyvsc  389 (433)
T 1uwv_A          346 DVTKQPW---AKNGFDKVLLDPARAGAAGVMQQII-KLEPIRIVYVSC  389 (433)
T ss_dssp             CCSSSGG---GTTCCSEEEECCCTTCCHHHHHHHH-HHCCSEEEEEES
T ss_pred             Hhhhhhh---hcCCCCEEEECCCCccHHHHHHHHH-hcCCCeEEEEEC
Confidence            4332110   1358999999976554555665554 478899887753

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.39  E-value=4.3e-12  Score=92.72  Aligned_cols=107  Identities=13%  Similarity=0.173  Sum_probs=79.2

Q ss_pred             CcHHHHHHHHHHHH---HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcc
Q 029764            4 TAPDAGQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   80 (188)
Q Consensus         4 ~~~~~~~~l~~l~~---~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d   80 (188)
                      +.+.....+..++.   ..++.+|||+|||+|..+..++.. + ..+++++|+++++++.+++++.      +++++++|
T Consensus        32 ~~~~~~~~l~~~~~~~~~~~~~~vlD~gcG~G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d  103 (200)
T 1ne2_A           32 TDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLL-G-AESVTAFDIDPDAIETAKRNCG------GVNFMVAD  103 (200)
T ss_dssp             CCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHT-T-BSEEEEEESCHHHHHHHHHHCT------TSEEEECC
T ss_pred             CCHHHHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHhcC------CCEEEECc
Confidence            44444444444443   236679999999999999999886 2 4589999999999999999864      58999999


Q ss_pred             hHHHHHHHhhcccCCCceeEEEEeCCc-----cchHHHHHHHHhccCcCeEEEEe
Q 029764           81 ALSVLDQLLKYSENEGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      +.+.          .++||+|+++...     .....+++.+.+.+  |+++++.
T Consensus       104 ~~~~----------~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~--g~~~~~~  146 (200)
T 1ne2_A          104 VSEI----------SGKYDTWIMNPPFGSVVKHSDRAFIDKAFETS--MWIYSIG  146 (200)
T ss_dssp             GGGC----------CCCEEEEEECCCC-------CHHHHHHHHHHE--EEEEEEE
T ss_pred             HHHC----------CCCeeEEEECCCchhccCchhHHHHHHHHHhc--CcEEEEE
Confidence            8753          2689999998642     12346788888887  6655554

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.36  E-value=3.6e-12  Score=98.49  Aligned_cols=93  Identities=13%  Similarity=0.066  Sum_probs=72.9

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029764            5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   84 (188)
Q Consensus         5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   84 (188)
                      .+...+.+...+...++.+|||||||+|..+..++..   +.+++++|+++++++.+++++...+..++++++++|+.+.
T Consensus        13 d~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~   89 (285)
T 1zq9_A           13 NPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT   89 (285)
T ss_dssp             CHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecc
Confidence            3444444444445567789999999999999999987   4599999999999999999987766656899999998754


Q ss_pred             HHHHhhcccCCCceeEEEEeCCccc
Q 029764           85 LDQLLKYSENEGSFDYAFVDADKDN  109 (188)
Q Consensus        85 ~~~~~~~~~~~~~~D~i~id~~~~~  109 (188)
                        .       ..+||+|+.+.....
T Consensus        90 --~-------~~~fD~vv~nlpy~~  105 (285)
T 1zq9_A           90 --D-------LPFFDTCVANLPYQI  105 (285)
T ss_dssp             --C-------CCCCSEEEEECCGGG
T ss_pred             --c-------chhhcEEEEecCccc
Confidence              1       358999999865433

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.36  E-value=1.5e-12  Score=99.02  Aligned_cols=96  Identities=17%  Similarity=0.224  Sum_probs=76.5

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   99 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   99 (188)
                      ++.+|||+|||+|..+..++..   +.+++++|+++++++.++++..     .+  ++.+|+.+. + +     ..++||
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~-----~~--~~~~d~~~~-~-~-----~~~~fD  116 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKGV-----KN--VVEAKAEDL-P-F-----PSGAFE  116 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHTC-----SC--EEECCTTSC-C-S-----CTTCEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHc---CCeEEEEeCCHHHHHHHHhhcC-----CC--EEECcHHHC-C-C-----CCCCEE
Confidence            6779999999999999999885   5699999999999999998753     12  778887543 1 1     246899


Q ss_pred             EEEEeCC----ccchHHHHHHHHhccCcCeEEEEecc
Q 029764          100 YAFVDAD----KDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus       100 ~i~id~~----~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      +|++...    ..+...+++++.++|+|||.+++...
T Consensus       117 ~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  153 (260)
T 2avn_A          117 AVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVD  153 (260)
T ss_dssp             EEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeC
Confidence            9998642    23467899999999999999998643

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.35  E-value=3.1e-12  Score=97.65  Aligned_cols=96  Identities=18%  Similarity=0.228  Sum_probs=77.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++.+|||+|||+|..+..++..++ +.+++++|+++++++.++++.      .++.+..+|..+. + +     ..++|
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~-~-~-----~~~~f  149 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALP-EITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRL-P-F-----SDTSM  149 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCT-TSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSC-S-B-----CTTCE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhC------CCcEEEEcchhhC-C-C-----CCCce
Confidence            4677999999999999999999875 679999999999999998763      3578889887543 1 1     24689


Q ss_pred             eEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764           99 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      |+|+.....    ..++++.++|+|||.+++...
T Consensus       150 D~v~~~~~~----~~l~~~~~~L~pgG~l~~~~~  179 (269)
T 1p91_A          150 DAIIRIYAP----CKAEELARVVKPGGWVITATP  179 (269)
T ss_dssp             EEEEEESCC----CCHHHHHHHEEEEEEEEEEEE
T ss_pred             eEEEEeCCh----hhHHHHHHhcCCCcEEEEEEc
Confidence            999986543    247888999999999988643

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=99.34  E-value=2.9e-12  Score=98.77  Aligned_cols=108  Identities=19%  Similarity=0.242  Sum_probs=88.5

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc--C-C-CCcEEEEEcchHHHHHHHhhcc
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--G-V-DHKINFIESEALSVLDQLLKYS   92 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~-~-~~~~~~~~~d~~~~~~~~~~~~   92 (188)
                      ...++++||-||.|.|..+..++++.+ ..+|+.||++++.++.+++.+...  + + .++++++.+|+..++..     
T Consensus        80 ~~p~pk~VLIiGgGdG~~~revlk~~~-v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~-----  153 (294)
T 3o4f_A           80 AHGHAKHVLIIGGGDGAMLREVTRHKN-VESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQ-----  153 (294)
T ss_dssp             HSSCCCEEEEESCTTSHHHHHHHTCTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSC-----
T ss_pred             hCCCCCeEEEECCCchHHHHHHHHcCC-cceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhh-----
Confidence            456788999999999999999998754 679999999999999999987542  1 1 37899999999887654     


Q ss_pred             cCCCceeEEEEeCCcc-------chHHHHHHHHhccCcCeEEEEec
Q 029764           93 ENEGSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        93 ~~~~~~D~i~id~~~~-------~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                       ..++||+|++|....       ...++++.+.+.|+|||+++...
T Consensus       154 -~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~  198 (294)
T 3o4f_A          154 -TSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN  198 (294)
T ss_dssp             -SSCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred             -ccccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence             257899999995321       23578999999999999999853

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=99.33  E-value=4.7e-12  Score=96.34  Aligned_cols=108  Identities=17%  Similarity=0.127  Sum_probs=79.0

Q ss_pred             CCCEEEEEcccchHHHHHHHhhC-------CC----CCEEEEEeCCc--------------hhHHHHHHHHHhcC-----
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTI-------PE----DGQITAIDVNR--------------ETYEIGLPIIKKAG-----   69 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~-------~~----~~~v~~iD~~~--------------~~~~~a~~~~~~~~-----   69 (188)
                      ++.+|||||+|+|++++.++..+       |.    ..+++++|..|              +....+++.++.++     
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            44699999999999999877653       32    25899999887              44456777766521     


Q ss_pred             -----CC---CcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCcc--c----hHHHHHHHHhccCcCeEEEE
Q 029764           70 -----VD---HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--N----YCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        70 -----~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~--~----~~~~~~~~~~~L~~gG~lv~  129 (188)
                           +.   .+++++.+|+.+.++.+...  ....||+||+|+...  +    ..++++.+.++|+|||+++.
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~--~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t  211 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDS--LNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT  211 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGG--GTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcccc--cCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence                 11   35779999999987765211  013799999997321  2    46799999999999999986

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.33  E-value=4.6e-13  Score=102.23  Aligned_cols=110  Identities=22%  Similarity=0.099  Sum_probs=76.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCC---------------------------
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD---------------------------   71 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~---------------------------   71 (188)
                      .++.+|||||||+|..+..++...  ..+|+++|+++.+++.|+++++.....                           
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~~--~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL  131 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             CCCceEEEeCCCccHHHHHHHHhh--hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence            355689999999997766655431  247999999999999999987653210                           


Q ss_pred             -CcEE-EEEcchHHHHHHHhhcccCCCceeEEEEeCC-------ccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           72 -HKIN-FIESEALSVLDQLLKYSENEGSFDYAFVDAD-------KDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        72 -~~~~-~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~-------~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                       .++. ++++|..+..+ +..  ...++||+|++...       ..+....+.++.++|||||.+++.+..
T Consensus       132 ~~~i~~~~~~D~~~~~~-~~~--~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~  199 (263)
T 2a14_A          132 RAAVKRVLKCDVHLGNP-LAP--AVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTL  199 (263)
T ss_dssp             HHHEEEEEECCTTSSST-TTT--CCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             HhhhheEEeccccCCCC-CCc--cccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEee
Confidence             1233 77777754211 000  01368999998632       134567889999999999999998644

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.32  E-value=3e-12  Score=101.38  Aligned_cols=117  Identities=17%  Similarity=0.151  Sum_probs=90.0

Q ss_pred             CcHHHHHHHHHHHH----HcCCCEEEEEcccchHHHHHHHhhCCCC----CEEEEEeCCchhHHHHHHHHHhcCCCCcEE
Q 029764            4 TAPDAGQLMAMLLR----LVNAKKTIEIGVFTGYSLLLTALTIPED----GQITAIDVNRETYEIGLPIIKKAGVDHKIN   75 (188)
Q Consensus         4 ~~~~~~~~l~~l~~----~~~~~~vLeiG~g~G~~~~~la~~~~~~----~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~   75 (188)
                      |++...++|..++.    ..++.+|||+|||+|..+..+++.++..    .+++++|+++.+++.|+.++...++  ++.
T Consensus       110 TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~~~  187 (344)
T 2f8l_A          110 TPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMT  187 (344)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCE
T ss_pred             ChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--Cce
Confidence            45666677666553    2245699999999999999998876522    7899999999999999999887776  478


Q ss_pred             EEEcchHHHHHHHhhcccCCCceeEEEEeCCccc---------------------hHHHHHHHHhccCcCeEEEEe
Q 029764           76 FIESEALSVLDQLLKYSENEGSFDYAFVDADKDN---------------------YCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        76 ~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~---------------------~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ++++|+....        ...+||+|+.+.+...                     ...++..+.+.|+|||.+++.
T Consensus       188 i~~~D~l~~~--------~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v  255 (344)
T 2f8l_A          188 LLHQDGLANL--------LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFL  255 (344)
T ss_dssp             EEESCTTSCC--------CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEECCCCCcc--------ccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEE
Confidence            9999986521        1468999999864211                     125789999999999987764

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.32  E-value=3.5e-12  Score=94.56  Aligned_cols=103  Identities=19%  Similarity=0.230  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029764            9 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   88 (188)
Q Consensus         9 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   88 (188)
                      ...+..+....++.+|||+|||+|..+..++..       +++|+++++++.++++        +++++.+|..+. + +
T Consensus        36 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~-~-~   98 (219)
T 1vlm_A           36 LSELQAVKCLLPEGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR--------GVFVLKGTAENL-P-L   98 (219)
T ss_dssp             HHHHHHHHHHCCSSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT--------TCEEEECBTTBC-C-S
T ss_pred             HHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc--------CCEEEEcccccC-C-C
Confidence            344455666677889999999999999888652       9999999999998876        478888887543 1 1


Q ss_pred             hhcccCCCceeEEEEeCC---ccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           89 LKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        89 ~~~~~~~~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                           ..++||+|++...   ..+...+++.+.++|+|||.+++....
T Consensus        99 -----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~  141 (219)
T 1vlm_A           99 -----KDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVD  141 (219)
T ss_dssp             -----CTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             -----CCCCeeEEEEcchHhhccCHHHHHHHHHHHcCCCcEEEEEEeC
Confidence                 2468999998753   345678999999999999999997554

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.32  E-value=1.9e-12  Score=104.87  Aligned_cols=101  Identities=15%  Similarity=0.164  Sum_probs=74.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++.+|||||||+|..+..++..   +.+++++|+++.+++.|+++    +......++..+..+.++..      .++|
T Consensus       106 ~~~~~VLDiGcG~G~~~~~l~~~---g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~~------~~~f  172 (416)
T 4e2x_A          106 GPDPFIVEIGCNDGIMLRTIQEA---GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRRT------EGPA  172 (416)
T ss_dssp             SSSCEEEEETCTTTTTHHHHHHT---TCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHHH------HCCE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHc---CCcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhcccC------CCCE
Confidence            35679999999999999999985   56999999999999988875    33222222222222222221      3799


Q ss_pred             eEEEEeCC---ccchHHHHHHHHhccCcCeEEEEecc
Q 029764           99 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        99 D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      |+|++...   ..+...+++.+.++|+|||++++...
T Consensus       173 D~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  209 (416)
T 4e2x_A          173 NVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDP  209 (416)
T ss_dssp             EEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence            99998753   34678899999999999999999754

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.32  E-value=7.9e-12  Score=91.23  Aligned_cols=99  Identities=16%  Similarity=0.173  Sum_probs=70.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH------------
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL------------   85 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------------   85 (188)
                      .++.+|||+|||+|..+..+++..++ +++|+++|+++..           . .++++++++|..+..            
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~-~~~v~~~~~d~~~~~~~~~~~~~~i~~   88 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------P-IPNVYFIQGEIGKDNMNNIKNINYIDN   88 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------C-CTTCEEEECCTTTTSSCCC--------
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------C-CCCceEEEccccchhhhhhcccccccc
Confidence            46679999999999999999998763 5899999999842           1 235888888875431            


Q ss_pred             -------HHHhhcccCCCceeEEEEeCCccc-------h-------HHHHHHHHhccCcCeEEEEe
Q 029764           86 -------DQLLKYSENEGSFDYAFVDADKDN-------Y-------CNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        86 -------~~~~~~~~~~~~~D~i~id~~~~~-------~-------~~~~~~~~~~L~~gG~lv~~  130 (188)
                             ..+... ...++||+|+++.....       .       ...++.+.++|+|||.+++.
T Consensus        89 ~~~~~~~~~~~~~-~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~  153 (201)
T 2plw_A           89 MNNNSVDYKLKEI-LQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVK  153 (201)
T ss_dssp             ---CHHHHHHHHH-HTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccchhhHHHHHhh-cCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence                   000000 02368999999853211       1       13677888999999999985

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.31  E-value=5.4e-11  Score=94.52  Aligned_cols=106  Identities=17%  Similarity=0.117  Sum_probs=84.3

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..+..+|+|||||+|..+..+++.+| +.+++..|. |++++.++++++..+ .++++++.+|..+.  .       ..+
T Consensus       177 ~~~~~~v~DvGgG~G~~~~~l~~~~p-~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~gD~~~~--~-------~~~  244 (353)
T 4a6d_A          177 LSVFPLMCDLGGGAGALAKECMSLYP-GCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEGDFFKD--P-------LPE  244 (353)
T ss_dssp             GGGCSEEEEETCTTSHHHHHHHHHCS-SCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTTTS--C-------CCC
T ss_pred             cccCCeEEeeCCCCCHHHHHHHHhCC-CceeEeccC-HHHHHHHHHhhhhcc-cCceeeecCccccC--C-------CCC
Confidence            34567999999999999999999998 889999998 889999998876544 57899999998642  1       357


Q ss_pred             eeEEEEeCC-----ccchHHHHHHHHhccCcCeEEEEeccccC
Q 029764           98 FDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLWG  135 (188)
Q Consensus        98 ~D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  135 (188)
                      +|++++...     .+....+++++.+.|+|||.+++.+...+
T Consensus       245 ~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~  287 (353)
T 4a6d_A          245 ADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLD  287 (353)
T ss_dssp             CSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCC
T ss_pred             ceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeC
Confidence            899988642     12335679999999999999888877653

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.30  E-value=5.3e-12  Score=97.43  Aligned_cols=111  Identities=15%  Similarity=0.035  Sum_probs=74.5

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCC-----------------C-----------
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV-----------------D-----------   71 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~-----------------~-----------   71 (188)
                      ++.+|||+|||+|..+..++.. + ..+|+++|+++++++.|++++...+-                 .           
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  148 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACS-H-FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR  148 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGG-G-CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHHHHhhcc-C-CCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence            6679999999999954444332 2 56999999999999999987643210                 0           


Q ss_pred             -CcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCC-------ccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           72 -HKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-------KDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        72 -~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~-------~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                       ..++++.+|+.+.++ +.+.....++||+|++...       ..+...+++++.++|||||.+++.+..
T Consensus       149 ~~~~~~~~~D~~~~~~-~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~  217 (289)
T 2g72_A          149 ARVKRVLPIDVHQPQP-LGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGAL  217 (289)
T ss_dssp             HHEEEEECCCTTSSST-TCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             hhhceEEecccCCCCC-ccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence             014556667654211 0000011356999998753       224678899999999999999997543

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.29  E-value=1.5e-11  Score=89.55  Aligned_cols=107  Identities=20%  Similarity=0.210  Sum_probs=73.1

Q ss_pred             HHHHHHHHH---HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH-
Q 029764            9 GQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-   84 (188)
Q Consensus         9 ~~~l~~l~~---~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-   84 (188)
                      -++++.+..   ..++.+|||+|||+|.++..+++.   +++|+++|+++..           .. ++++++++|..+. 
T Consensus        11 ~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~-----------~~-~~v~~~~~D~~~~~   75 (191)
T 3dou_A           11 FKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEME-----------EI-AGVRFIRCDIFKET   75 (191)
T ss_dssp             HHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCC-----------CC-TTCEEEECCTTSSS
T ss_pred             HHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccc-----------cC-CCeEEEEccccCHH
Confidence            344444433   346789999999999999999986   6799999999852           12 4689999997542 


Q ss_pred             -HHHHhhccc--CCCceeEEEEeCCcc-------c-------hHHHHHHHHhccCcCeEEEEe
Q 029764           85 -LDQLLKYSE--NEGSFDYAFVDADKD-------N-------YCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        85 -~~~~~~~~~--~~~~~D~i~id~~~~-------~-------~~~~~~~~~~~L~~gG~lv~~  130 (188)
                       ...+...-.  ..++||+|++|..+.       +       ....++.+.++|+|||.+++.
T Consensus        76 ~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k  138 (191)
T 3dou_A           76 IFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLK  138 (191)
T ss_dssp             HHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence             111110000  014899999985321       0       134567778999999999975

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.29  E-value=1.3e-11  Score=95.96  Aligned_cols=95  Identities=14%  Similarity=0.113  Sum_probs=70.1

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029764            5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   84 (188)
Q Consensus         5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   84 (188)
                      .+...+.+...+...++.+|||+|||+|..+..++..   +.+|+++|+++++++.+++++...++ ++++++++|+.+.
T Consensus        27 ~~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~---~~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~~~  102 (299)
T 2h1r_A           27 NPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL---AKKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAIKT  102 (299)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT---SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CCSS
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchhhC
Confidence            3444455555555667789999999999999999975   56999999999999999999887776 5699999998653


Q ss_pred             HHHHhhcccCCCceeEEEEeCCccchHH
Q 029764           85 LDQLLKYSENEGSFDYAFVDADKDNYCN  112 (188)
Q Consensus        85 ~~~~~~~~~~~~~~D~i~id~~~~~~~~  112 (188)
                               ..++||+|+++.......+
T Consensus       103 ---------~~~~~D~Vv~n~py~~~~~  121 (299)
T 2h1r_A          103 ---------VFPKFDVCTANIPYKISSP  121 (299)
T ss_dssp             ---------CCCCCSEEEEECCGGGHHH
T ss_pred             ---------CcccCCEEEEcCCcccccH
Confidence                     1358999999865443333

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.28  E-value=1.3e-12  Score=98.16  Aligned_cols=98  Identities=15%  Similarity=0.138  Sum_probs=67.6

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc-chHHHH-HHHhhcccCCCc
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVL-DQLLKYSENEGS   97 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~-~~~~~~~~~~~~   97 (188)
                      ++++|||||||+|..+..+++..  ..+|+++|+++++++.++++..      ++..... +..... ..+     ....
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~g--~~~V~gvDis~~ml~~a~~~~~------~~~~~~~~~~~~~~~~~~-----~~~~  103 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQNG--AKLVYALDVGTNQLAWKIRSDE------RVVVMEQFNFRNAVLADF-----EQGR  103 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTT--CSEEEEECSSCCCCCHHHHTCT------TEEEECSCCGGGCCGGGC-----CSCC
T ss_pred             CCCEEEEEccCCCHHHHHHHhcC--CCEEEEEcCCHHHHHHHHHhCc------cccccccceEEEeCHhHc-----CcCC
Confidence            45699999999999999999862  3599999999999998776432      2322221 221110 011     1123


Q ss_pred             eeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           98 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        98 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ||.+.+|........++..+.++|||||.+++.
T Consensus       104 ~d~~~~D~v~~~l~~~l~~i~rvLkpgG~lv~~  136 (232)
T 3opn_A          104 PSFTSIDVSFISLDLILPPLYEILEKNGEVAAL  136 (232)
T ss_dssp             CSEEEECCSSSCGGGTHHHHHHHSCTTCEEEEE
T ss_pred             CCEEEEEEEhhhHHHHHHHHHHhccCCCEEEEE
Confidence            566666655555678899999999999998884

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.28  E-value=3.5e-12  Score=97.17  Aligned_cols=91  Identities=18%  Similarity=0.184  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCc-------hhHHHHHHHHHhcCCCCcEEEEEcch
Q 029764            9 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNR-------ETYEIGLPIIKKAGVDHKINFIESEA   81 (188)
Q Consensus         9 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~-------~~~~~a~~~~~~~~~~~~~~~~~~d~   81 (188)
                      .+++...+...++.+|||+|||+|..++.+|..   +++|+++|+++       ++++.|+++.+.+++.++++++++|+
T Consensus        72 ~~~l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~---g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~  148 (258)
T 2r6z_A           72 GELIAKAVNHTAHPTVWDATAGLGRDSFVLASL---GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNA  148 (258)
T ss_dssp             -CHHHHHTTGGGCCCEEETTCTTCHHHHHHHHT---TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCH
T ss_pred             hHHHHHHhCcCCcCeEEEeeCccCHHHHHHHHh---CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCH
Confidence            445555555556679999999999999999985   57999999999       99999999888777666799999999


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeC
Q 029764           82 LSVLDQLLKYSENEGSFDYAFVDA  105 (188)
Q Consensus        82 ~~~~~~~~~~~~~~~~~D~i~id~  105 (188)
                      .+.++.+.+.   .++||+|++|.
T Consensus       149 ~~~l~~~~~~---~~~fD~V~~dP  169 (258)
T 2r6z_A          149 AEQMPALVKT---QGKPDIVYLDP  169 (258)
T ss_dssp             HHHHHHHHHH---HCCCSEEEECC
T ss_pred             HHHHHhhhcc---CCCccEEEECC
Confidence            8877665321   15899999985

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.27  E-value=4.9e-12  Score=93.80  Aligned_cols=99  Identities=13%  Similarity=0.091  Sum_probs=77.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++.+|||+|||+|..+..++..   +.+++++|+++++++.++++.        .+++.+|..+....+     ..++|
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~-----~~~~f   94 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKEN---GTRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPY-----EEEQF   94 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTT---TCEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCS-----CTTCE
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCC-----CCCcc
Confidence            46779999999999999999886   379999999999999888653        267788875421111     24689


Q ss_pred             eEEEEeCC---ccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           99 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        99 D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      |+|++...   ..+...+++.+.++|+|||.+++....
T Consensus        95 D~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  132 (230)
T 3cc8_A           95 DCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPN  132 (230)
T ss_dssp             EEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEEC
T ss_pred             CEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            99998753   335578899999999999999986543

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.27  E-value=5.4e-12  Score=100.03  Aligned_cols=104  Identities=13%  Similarity=0.052  Sum_probs=79.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .+..+|||||||+|..+..+++..+ +.+++++|+ ++.+.  +++.+..+..++++++.+|..+   .       ..+|
T Consensus       183 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~---~-------~p~~  248 (348)
T 3lst_A          183 PATGTVADVGGGRGGFLLTVLREHP-GLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLR---E-------VPHA  248 (348)
T ss_dssp             CSSEEEEEETCTTSHHHHHHHHHCT-TEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTT---C-------CCCC
T ss_pred             cCCceEEEECCccCHHHHHHHHHCC-CCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCC---C-------CCCC
Confidence            3566999999999999999999987 789999999 44444  3333444556789999999852   1       1389


Q ss_pred             eEEEEeCC---ccc--hHHHHHHHHhccCcCeEEEEeccccCc
Q 029764           99 DYAFVDAD---KDN--YCNYHERLMKLLKVGGIAVYDNTLWGG  136 (188)
Q Consensus        99 D~i~id~~---~~~--~~~~~~~~~~~L~~gG~lv~~~~~~~g  136 (188)
                      |+|++...   ..+  ...+++++.+.|||||.+++.+...+.
T Consensus       249 D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~  291 (348)
T 3lst_A          249 DVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPE  291 (348)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCS
T ss_pred             cEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence            99998742   222  257899999999999999998876543

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=99.27  E-value=6.3e-11  Score=94.07  Aligned_cols=148  Identities=15%  Similarity=0.066  Sum_probs=103.7

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcC---C----CCcEEEEEcchHHHHHHHhh
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG---V----DHKINFIESEALSVLDQLLK   90 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~---~----~~~~~~~~~d~~~~~~~~~~   90 (188)
                      ..++++||-||.|.|..+..++++ + ..+|+.||++|+.++.+++.+....   .    .++++++.+|+..++.+..+
T Consensus       203 ~~~pkrVLIIGgGdG~~~revlkh-~-~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~  280 (381)
T 3c6k_A          203 DYTGKDVLILGGGDGGILCEIVKL-K-PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAK  280 (381)
T ss_dssp             CCTTCEEEEEECTTCHHHHHHHTT-C-CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHH
T ss_pred             cCCCCeEEEECCCcHHHHHHHHhc-C-CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhh
Confidence            346789999999999999999885 4 4799999999999999999864321   1    24689999999998876543


Q ss_pred             cccCCCceeEEEEeCCc----c---------chHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHH
Q 029764           91 YSENEGSFDYAFVDADK----D---------NYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAI  157 (188)
Q Consensus        91 ~~~~~~~~D~i~id~~~----~---------~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  157 (188)
                      .   .++||+|++|...    .         ...++++.+.+.|+|||+++......          +       .....
T Consensus       281 ~---~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~----------~-------~~~~~  340 (381)
T 3c6k_A          281 E---GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCV----------N-------LTEAL  340 (381)
T ss_dssp             H---TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEET----------T-------CHHHH
T ss_pred             c---cCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCC----------c-------chhHH
Confidence            2   4689999999421    0         12567899999999999999753221          0       22235


Q ss_pred             HHHHHHhhcC-CCeEE----EEee---cCCceEEEEEc
Q 029764          158 LDLNRSLADD-PRVQL----SHVA---LGDGITICRRI  187 (188)
Q Consensus       158 ~~~~~~~~~~-~~~~~----~~lp---~~~G~~~~~~~  187 (188)
                      ..+.+.+++- +.+..    ..+|   -..|+.++.|+
T Consensus       341 ~~i~~tl~~vF~~v~~~~~~~~VPSy~~~W~F~~aSK~  378 (381)
T 3c6k_A          341 SLYEEQLGRLYCPVEFSKEIVCVPSYLELWVFYTVWKK  378 (381)
T ss_dssp             HHHHHHHTTSSSCEEEEEEEECCGGGSSCEEEEEEEEC
T ss_pred             HHHHHHHHHhCCcceEeeEEEEecCCCCceeeeEEECC
Confidence            5566666554 33322    2234   24688888775

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.26  E-value=5.6e-11  Score=86.26  Aligned_cols=101  Identities=12%  Similarity=0.161  Sum_probs=71.2

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCC--------CEEEEEeCCchhHHHHHHHHHhcCCCCcEEEE-EcchHHHHH--
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPED--------GQITAIDVNRETYEIGLPIIKKAGVDHKINFI-ESEALSVLD--   86 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~--------~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~-~~d~~~~~~--   86 (188)
                      ..++.+|||+|||+|..+..+++..+..        .+|+++|+++..           .. .+++++ .+|..+...  
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~-~~~~~~~~~d~~~~~~~~   87 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL-EGATFLCPADVTDPRTSQ   87 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC-TTCEEECSCCTTSHHHHH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC-CCCeEEEeccCCCHHHHH
Confidence            3467899999999999999999987532        799999999842           12 357888 888654211  


Q ss_pred             HHhhcccCCCceeEEEEeCCcc-------ch-------HHHHHHHHhccCcCeEEEEec
Q 029764           87 QLLKYSENEGSFDYAFVDADKD-------NY-------CNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        87 ~~~~~~~~~~~~D~i~id~~~~-------~~-------~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      .+... ...++||+|+++....       +.       ...++.+.++|+|||.+++..
T Consensus        88 ~~~~~-~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~  145 (196)
T 2nyu_A           88 RILEV-LPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKT  145 (196)
T ss_dssp             HHHHH-SGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHh-cCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence            11000 0125899999875211       11       367888899999999999864

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.26  E-value=7.3e-12  Score=96.68  Aligned_cols=99  Identities=22%  Similarity=0.114  Sum_probs=71.5

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE-cchHHHHHHHhhcccCCCce
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~   98 (188)
                      ++.+|||+|||+|..+..+++. . ..+|+++|+++.+++.+.++      ..++.... .+.......-    ....+|
T Consensus        85 ~g~~vLDiGcGTG~~t~~L~~~-g-a~~V~aVDvs~~mL~~a~r~------~~rv~~~~~~ni~~l~~~~----l~~~~f  152 (291)
T 3hp7_A           85 EDMITIDIGASTGGFTDVMLQN-G-AKLVYAVDVGTNQLVWKLRQ------DDRVRSMEQYNFRYAEPVD----FTEGLP  152 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-T-CSEEEEECSSSSCSCHHHHT------CTTEEEECSCCGGGCCGGG----CTTCCC
T ss_pred             cccEEEecCCCccHHHHHHHhC-C-CCEEEEEECCHHHHHHHHHh------CcccceecccCceecchhh----CCCCCC
Confidence            4579999999999999998886 2 46999999999999875432      12343332 3332211110    012459


Q ss_pred             eEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           99 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      |+|++|....+....+..+.++|+|||.+++-
T Consensus       153 D~v~~d~sf~sl~~vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          153 SFASIDVSFISLNLILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             SEEEECCSSSCGGGTHHHHHHHSCTTCEEEEE
T ss_pred             CEEEEEeeHhhHHHHHHHHHHHcCcCCEEEEE
Confidence            99999987777788999999999999998874

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.25  E-value=3.5e-11  Score=91.91  Aligned_cols=120  Identities=15%  Similarity=0.141  Sum_probs=79.9

Q ss_pred             HHHHHHcCCCEEEEEcccc--hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhh
Q 029764           13 AMLLRLVNAKKTIEIGVFT--GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK   90 (188)
Q Consensus        13 ~~l~~~~~~~~vLeiG~g~--G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   90 (188)
                      ..++......+|||||||.  +..+..++....++.+|+++|.||.++..|++.+...+ ..+++++++|..+.-..+..
T Consensus        71 ~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-~~~~~~v~aD~~~~~~~l~~  149 (277)
T 3giw_A           71 AHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-EGRTAYVEADMLDPASILDA  149 (277)
T ss_dssp             HHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-SSEEEEEECCTTCHHHHHTC
T ss_pred             HHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-CCcEEEEEecccChhhhhcc
Confidence            3333334557999999997  44445555543338999999999999999999886543 24699999998764211100


Q ss_pred             cccCCCcee-----EEEEeCC---ccc---hHHHHHHHHhccCcCeEEEEecccc
Q 029764           91 YSENEGSFD-----YAFVDAD---KDN---YCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        91 ~~~~~~~~D-----~i~id~~---~~~---~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      . .....||     .|++.+.   ..+   ....+..+.+.|+|||++++.....
T Consensus       150 ~-~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~  203 (277)
T 3giw_A          150 P-ELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTA  203 (277)
T ss_dssp             H-HHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECC
T ss_pred             c-ccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccC
Confidence            0 0013344     4555532   122   4678999999999999999986553

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.24  E-value=1e-10  Score=90.60  Aligned_cols=100  Identities=16%  Similarity=0.119  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029764            6 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   85 (188)
Q Consensus         6 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   85 (188)
                      +...+.+...+...++.+|||||||+|..+..++..   ..+|+++|+++++++.+++++...   ++++++++|+.+.-
T Consensus        36 ~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~---~~~V~aVEid~~li~~a~~~~~~~---~~v~vi~gD~l~~~  109 (295)
T 3gru_A           36 KNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN---AKKVYVIEIDKSLEPYANKLKELY---NNIEIIWGDALKVD  109 (295)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCGGGHHHHHHHHHHC---SSEEEEESCTTTSC
T ss_pred             HHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHhccC---CCeEEEECchhhCC
Confidence            444444444455667789999999999999999987   569999999999999999998732   47999999997641


Q ss_pred             HHHhhcccCCCceeEEEEeCCccchHHHHHHHH
Q 029764           86 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLM  118 (188)
Q Consensus        86 ~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~  118 (188)
                        +     ....||.|+.+.+.....+.+..+.
T Consensus       110 --~-----~~~~fD~Iv~NlPy~is~pil~~lL  135 (295)
T 3gru_A          110 --L-----NKLDFNKVVANLPYQISSPITFKLI  135 (295)
T ss_dssp             --G-----GGSCCSEEEEECCGGGHHHHHHHHH
T ss_pred             --c-----ccCCccEEEEeCcccccHHHHHHHH
Confidence              1     1246999998865444344443333

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.22  E-value=3.5e-11  Score=96.09  Aligned_cols=98  Identities=9%  Similarity=0.092  Sum_probs=77.2

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   99 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   99 (188)
                      +..+|||||||+|..+..+++.+| +.+++++|+ |++++.+++.       ++++++.+|..+.   +      ... |
T Consensus       203 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~---~------p~~-D  263 (368)
T 3reo_A          203 GLTTIVDVGGGTGAVASMIVAKYP-SINAINFDL-PHVIQDAPAF-------SGVEHLGGDMFDG---V------PKG-D  263 (368)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTTC---C------CCC-S
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCC-CCEEEEEeh-HHHHHhhhhc-------CCCEEEecCCCCC---C------CCC-C
Confidence            457999999999999999999987 789999999 8887766532       4799999998651   1      123 9


Q ss_pred             EEEEeCCc-----cchHHHHHHHHhccCcCeEEEEeccccCc
Q 029764          100 YAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLWGG  136 (188)
Q Consensus       100 ~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  136 (188)
                      +|++....     .....+++++.+.|+|||.+++.+...+.
T Consensus       264 ~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  305 (368)
T 3reo_A          264 AIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPP  305 (368)
T ss_dssp             EEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCS
T ss_pred             EEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence            99886432     22347899999999999999998877543

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.20  E-value=2.5e-11  Score=97.76  Aligned_cols=77  Identities=18%  Similarity=0.138  Sum_probs=66.6

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc--CCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ++.+|||+|||+|..++.+++.   +.+|+++|+++.+++.|++|++.+  ++ ++++++++|+.+.++...     ..+
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~---g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~~-----~~~  163 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSK---ASQGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPLIK-----TFH  163 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTT---CSEEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHHHH-----HHC
T ss_pred             CCCEEEEeCCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhhcc-----CCC
Confidence            3789999999999999999886   569999999999999999999988  77 679999999988655431     258


Q ss_pred             eeEEEEeC
Q 029764           98 FDYAFVDA  105 (188)
Q Consensus        98 ~D~i~id~  105 (188)
                      ||+||+|.
T Consensus       164 fDvV~lDP  171 (410)
T 3ll7_A          164 PDYIYVDP  171 (410)
T ss_dssp             CSEEEECC
T ss_pred             ceEEEECC
Confidence            99999984

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.20  E-value=3.9e-11  Score=96.62  Aligned_cols=116  Identities=12%  Similarity=0.048  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCC---C----------------------------------CCEE
Q 029764            6 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP---E----------------------------------DGQI   48 (188)
Q Consensus         6 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~---~----------------------------------~~~v   48 (188)
                      +..+..|-.++...++..+||.+||+|..++..|....   +                                  ..+|
T Consensus       187 e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V  266 (393)
T 3k0b_A          187 ETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNI  266 (393)
T ss_dssp             HHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred             HHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceE
Confidence            33344444444445667999999999999888775432   1                                  1569


Q ss_pred             EEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCc-------cchHHHHHHHHhcc
Q 029764           49 TAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-------DNYCNYHERLMKLL  121 (188)
Q Consensus        49 ~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~-------~~~~~~~~~~~~~L  121 (188)
                      +++|+++.+++.|++|+...|+.+++++.++|+.+...        ..+||+|+++.+.       .....+...+.+.|
T Consensus       267 ~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~--------~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~l  338 (393)
T 3k0b_A          267 IGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQT--------EDEYGVVVANPPYGERLEDEEAVRQLYREMGIVY  338 (393)
T ss_dssp             EEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCC--------CCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCC--------CCCCCEEEECCCCccccCCchhHHHHHHHHHHHH
Confidence            99999999999999999999998889999999976421        3589999999643       22333444444444


Q ss_pred             Cc--CeEEEE
Q 029764          122 KV--GGIAVY  129 (188)
Q Consensus       122 ~~--gG~lv~  129 (188)
                      ++  ||.+.+
T Consensus       339 k~~~g~~~~i  348 (393)
T 3k0b_A          339 KRMPTWSVYV  348 (393)
T ss_dssp             HTCTTCEEEE
T ss_pred             hcCCCCEEEE
Confidence            44  665544

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.20  E-value=1.4e-11  Score=90.85  Aligned_cols=95  Identities=15%  Similarity=0.106  Sum_probs=72.7

Q ss_pred             HHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029764           10 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   89 (188)
Q Consensus        10 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   89 (188)
                      .++..+....++.+|||+|||+|..+..++      .+++++|+++.                +++++.+|..+. + + 
T Consensus        57 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~----------------~~~~~~~d~~~~-~-~-  111 (215)
T 2zfu_A           57 RIARDLRQRPASLVVADFGCGDCRLASSIR------NPVHCFDLASL----------------DPRVTVCDMAQV-P-L-  111 (215)
T ss_dssp             HHHHHHHTSCTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS----------------STTEEESCTTSC-S-C-
T ss_pred             HHHHHHhccCCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC----------------CceEEEeccccC-C-C-
Confidence            455655555667899999999999887763      48999999987                356778887652 1 1 


Q ss_pred             hcccCCCceeEEEEeC--CccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           90 KYSENEGSFDYAFVDA--DKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        90 ~~~~~~~~~D~i~id~--~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                          ..++||+|++..  +..+...+++.+.++|+|||.+++.+..
T Consensus       112 ----~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~~gG~l~i~~~~  153 (215)
T 2zfu_A          112 ----EDESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEVS  153 (215)
T ss_dssp             ----CTTCEEEEEEESCCCSSCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred             ----CCCCEeEEEEehhccccCHHHHHHHHHHhCCCCeEEEEEEcC
Confidence                246899999874  2356678999999999999999997644

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.20  E-value=1.5e-10  Score=92.29  Aligned_cols=99  Identities=9%  Similarity=0.063  Sum_probs=78.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .+..+|||||||+|..+..+++.+| +.+++++|+ |++++.+++       .++++++.+|..+  + +      ... 
T Consensus       200 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~--~-~------p~~-  260 (364)
T 3p9c_A          200 EGLGTLVDVGGGVGATVAAIAAHYP-TIKGVNFDL-PHVISEAPQ-------FPGVTHVGGDMFK--E-V------PSG-  260 (364)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCC-------CTTEEEEECCTTT--C-C------CCC-
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHCC-CCeEEEecC-HHHHHhhhh-------cCCeEEEeCCcCC--C-C------CCC-
Confidence            3467999999999999999999987 789999999 888776653       1479999999865  1 1      123 


Q ss_pred             eEEEEeCCc-----cchHHHHHHHHhccCcCeEEEEeccccCc
Q 029764           99 DYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLWGG  136 (188)
Q Consensus        99 D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  136 (188)
                      |+|++....     .....+++++.+.|+|||.+++.+...+.
T Consensus       261 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~  303 (364)
T 3p9c_A          261 DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPV  303 (364)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCS
T ss_pred             CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence            999986422     23457899999999999999998877543

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.19  E-value=4.5e-11  Score=91.76  Aligned_cols=105  Identities=21%  Similarity=0.215  Sum_probs=75.1

Q ss_pred             CCCEEEEEcccchH----HHHHHHhhCCC---CCEEEEEeCCchhHHHHHHHHHh-----------------------cC
Q 029764           20 NAKKTIEIGVFTGY----SLLLTALTIPE---DGQITAIDVNRETYEIGLPIIKK-----------------------AG   69 (188)
Q Consensus        20 ~~~~vLeiG~g~G~----~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~-----------------------~~   69 (188)
                      ++.+|+|+|||+|.    .++.++..++.   +.+|+++|+|+++++.|+++.-.                       .+
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            45699999999998    45556665432   35899999999999999986410                       00


Q ss_pred             -------CCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCC-----ccchHHHHHHHHhccCcCeEEEEe
Q 029764           70 -------VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        70 -------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                             +..++.|.++|..+.  .+.    ..++||+|++...     .......++.+.+.|+|||++++.
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~--~~~----~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg  251 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEK--QYN----VPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  251 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCS--SCC----CCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             ceeechhhcccCeEEecccCCC--CCC----cCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence                   013688999988652  110    0368999998642     223467889999999999999984

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.19  E-value=1.7e-11  Score=100.35  Aligned_cols=118  Identities=16%  Similarity=0.124  Sum_probs=90.9

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCC------------CCCEEEEEeCCchhHHHHHHHHHhcCCC
Q 029764            4 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP------------EDGQITAIDVNRETYEIGLPIIKKAGVD   71 (188)
Q Consensus         4 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~------------~~~~v~~iD~~~~~~~~a~~~~~~~~~~   71 (188)
                      |++...++|..++...++.+|+|.|||+|...+.+++.+.            ...+++++|+++.++..|+.++...++.
T Consensus       155 TP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~  234 (445)
T 2okc_A          155 TPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG  234 (445)
T ss_dssp             CCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             CcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCC
Confidence            5667777777777666677999999999999988887541            1358999999999999999998887775


Q ss_pred             C-cEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCccc--------------------hHHHHHHHHhccCcCeEEEE
Q 029764           72 H-KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--------------------YCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        72 ~-~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~--------------------~~~~~~~~~~~L~~gG~lv~  129 (188)
                      . +..+.++|+....        ...+||+|+.+.+...                    ...++..+.++|++||.+++
T Consensus       235 ~~~~~i~~gD~l~~~--------~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~  305 (445)
T 2okc_A          235 TDRSPIVCEDSLEKE--------PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAV  305 (445)
T ss_dssp             SSCCSEEECCTTTSC--------CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cCCCCEeeCCCCCCc--------ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEE
Confidence            2 5778999986531        1248999998743111                    13788999999999998765

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.19  E-value=1.5e-10  Score=89.91  Aligned_cols=87  Identities=16%  Similarity=0.111  Sum_probs=69.9

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      ...++.+|||+|||+|..+..+++.++ +++|+++|.++++++.|+++++..+  ++++++++|..+....+...  ...
T Consensus        23 ~~~~g~~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~l~~~l~~~--g~~   97 (301)
T 1m6y_A           23 KPEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKTL--GIE   97 (301)
T ss_dssp             CCCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHHT--TCS
T ss_pred             CCCCCCEEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHHHHHHHHhc--CCC
Confidence            344677999999999999999999887 7899999999999999999998876  57999999986653222211  125


Q ss_pred             ceeEEEEeCCcc
Q 029764           97 SFDYAFVDADKD  108 (188)
Q Consensus        97 ~~D~i~id~~~~  108 (188)
                      +||.|++|....
T Consensus        98 ~~D~Vl~D~gvS  109 (301)
T 1m6y_A           98 KVDGILMDLGVS  109 (301)
T ss_dssp             CEEEEEEECSCC
T ss_pred             CCCEEEEcCccc
Confidence            899999997543

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.18  E-value=1.4e-10  Score=87.64  Aligned_cols=144  Identities=10%  Similarity=-0.003  Sum_probs=99.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++.+|||+|||.|-.++.++...+ ..+++++|+++.+++.+++++..+|+.  ..+.+.|.....        ..++|
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p-~a~y~a~DId~~~le~a~~~l~~~g~~--~~~~v~D~~~~~--------p~~~~  199 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPA-ETVYIASDIDARLVGFVDEALTRLNVP--HRTNVADLLEDR--------LDEPA  199 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCT-TCEEEEEESBHHHHHHHHHHHHHTTCC--EEEEECCTTTSC--------CCSCC
T ss_pred             CCCceeeeeccCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeeecccC--------CCCCc
Confidence            5578999999999999999887655 889999999999999999999998864  677788765432        25789


Q ss_pred             eEEEEeCCccch-----HHHHHHHHhccCcCeEEEEeccc-cCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeEE
Q 029764           99 DYAFVDADKDNY-----CNYHERLMKLLKVGGIAVYDNTL-WGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQL  172 (188)
Q Consensus        99 D~i~id~~~~~~-----~~~~~~~~~~L~~gG~lv~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (188)
                      |++++.-..+..     ...+ .+.+.|+++|++|--+.- ..|    +..       + +.....+..+......++..
T Consensus       200 DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~G----rs~-------g-m~~~Y~~~~e~~~~~~g~~~  266 (281)
T 3lcv_B          200 DVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQ----RSK-------G-MFQNYSQSFESQARERSCRI  266 (281)
T ss_dssp             SEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEECC------------------C-HHHHHHHHHHHHHHHHTCCE
T ss_pred             chHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEeccchhhcC----CCc-------c-hhhHHHHHHHHHHHhcCCce
Confidence            999886432222     2344 778999999999876541 111    111       1 44444444444333335566


Q ss_pred             EEeecCCceEEEEE
Q 029764          173 SHVALGDGITICRR  186 (188)
Q Consensus       173 ~~lp~~~G~~~~~~  186 (188)
                      ..+-+++-+.+..+
T Consensus       267 ~~~~~~nEl~y~i~  280 (281)
T 3lcv_B          267 QRLEIGNELIYVIQ  280 (281)
T ss_dssp             EEEEETTEEEEEEC
T ss_pred             eeeeecCeeEEEec
Confidence            66777777766654

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.18  E-value=1e-10  Score=98.46  Aligned_cols=103  Identities=21%  Similarity=0.219  Sum_probs=78.1

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..++.+|||||||.|..+..||+.   +.+|++||.++..++.|+......+.. ++++.++++.+.....     ..++
T Consensus        64 ~~~~~~vLDvGCG~G~~~~~la~~---ga~V~giD~~~~~i~~a~~~a~~~~~~-~~~~~~~~~~~~~~~~-----~~~~  134 (569)
T 4azs_A           64 LGRPLNVLDLGCAQGFFSLSLASK---GATIVGIDFQQENINVCRALAEENPDF-AAEFRVGRIEEVIAAL-----EEGE  134 (569)
T ss_dssp             HTSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHTSTTS-EEEEEECCHHHHHHHC-----CTTS
T ss_pred             cCCCCeEEEECCCCcHHHHHHHhC---CCEEEEECCCHHHHHHHHHHHHhcCCC-ceEEEECCHHHHhhhc-----cCCC
Confidence            457789999999999999999996   779999999999999999998877643 5999999998876543     2468


Q ss_pred             eeEEEEeCCccchH-----HHHHHHHhccCcCeEEEE
Q 029764           98 FDYAFVDADKDNYC-----NYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        98 ~D~i~id~~~~~~~-----~~~~~~~~~L~~gG~lv~  129 (188)
                      ||+|++-...++..     ..+..+.+.|+++|...+
T Consensus       135 fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~  171 (569)
T 4azs_A          135 FDLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVI  171 (569)
T ss_dssp             CSEEEEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEE
T ss_pred             ccEEEECcchhcCCCHHHHHHHHHHHHHhccccceee
Confidence            99999875433322     112334455677664443

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.18  E-value=2.9e-11  Score=97.90  Aligned_cols=109  Identities=17%  Similarity=0.225  Sum_probs=82.0

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029764            4 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   83 (188)
Q Consensus         4 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   83 (188)
                      |++...+.|..++...++.+|||+|||+|..+..+++......+++++|+++.+++.|          .+++++++|..+
T Consensus        23 TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~~~D~~~   92 (421)
T 2ih2_A           23 TPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADFLL   92 (421)
T ss_dssp             CCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCGGG
T ss_pred             CCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEEeCChhh
Confidence            4566666666655544567999999999999999998763367999999999998766          368999999875


Q ss_pred             HHHHHhhcccCCCceeEEEEeCCc--------------cc------------------hHHHHHHHHhccCcCeEEEEe
Q 029764           84 VLDQLLKYSENEGSFDYAFVDADK--------------DN------------------YCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        84 ~~~~~~~~~~~~~~~D~i~id~~~--------------~~------------------~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ..        ..++||+|+.+.+.              ..                  +..+++.+.++|++||.+++-
T Consensus        93 ~~--------~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i  163 (421)
T 2ih2_A           93 WE--------PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFV  163 (421)
T ss_dssp             CC--------CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cC--------ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEE
Confidence            41        13689999996321              11                  125688889999999987763

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.17  E-value=1.1e-10  Score=93.76  Aligned_cols=115  Identities=8%  Similarity=0.016  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCC-------------------------------------CCEEE
Q 029764            7 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-------------------------------------DGQIT   49 (188)
Q Consensus         7 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~-------------------------------------~~~v~   49 (188)
                      ..+..|-.++...++..++|.+||+|..++..|.....                                     ..+++
T Consensus       181 ~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~  260 (384)
T 3ldg_A          181 NMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDIS  260 (384)
T ss_dssp             HHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred             HHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEE
Confidence            34444444445556779999999999998887754321                                     15699


Q ss_pred             EEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCc-------cchHHHHHHHHhccC
Q 029764           50 AIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-------DNYCNYHERLMKLLK  122 (188)
Q Consensus        50 ~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~-------~~~~~~~~~~~~~L~  122 (188)
                      ++|+++.+++.|++|++..|+.+++++.++|+.+...        ..+||+|+++.+.       .....+...+.+.|+
T Consensus       261 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~--------~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk  332 (384)
T 3ldg_A          261 GFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKT--------NKINGVLISNPPYGERLLDDKAVDILYNEMGETFA  332 (384)
T ss_dssp             EEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCC--------CCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHT
T ss_pred             EEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCc--------cCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999999998889999999976421        3589999999542       234455555555555


Q ss_pred             c--CeEEEE
Q 029764          123 V--GGIAVY  129 (188)
Q Consensus       123 ~--gG~lv~  129 (188)
                      +  ||.+.+
T Consensus       333 ~~~g~~~~i  341 (384)
T 3ldg_A          333 PLKTWSQFI  341 (384)
T ss_dssp             TCTTSEEEE
T ss_pred             hCCCcEEEE
Confidence            5  665444

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.16  E-value=5.2e-11  Score=95.66  Aligned_cols=113  Identities=17%  Similarity=0.139  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCC-------------------------------------CCCEEEEE
Q 029764            9 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP-------------------------------------EDGQITAI   51 (188)
Q Consensus         9 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~-------------------------------------~~~~v~~i   51 (188)
                      +..|-.++...++.+|||++||+|..++.+|....                                     ...+|+++
T Consensus       184 Aa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~Gv  263 (385)
T 3ldu_A          184 AAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGY  263 (385)
T ss_dssp             HHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEE
T ss_pred             HHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEE
Confidence            33333333445667999999999999888876532                                     12579999


Q ss_pred             eCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCc-------cchHHHHHHHHhccCc-
Q 029764           52 DVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-------DNYCNYHERLMKLLKV-  123 (188)
Q Consensus        52 D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~-------~~~~~~~~~~~~~L~~-  123 (188)
                      |+++.+++.|++|+...++.+++++.++|+.+...        ..+||+|+++.+.       .....+...+.+.|++ 
T Consensus       264 Did~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~--------~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~  335 (385)
T 3ldu_A          264 DIDEESIDIARENAEIAGVDEYIEFNVGDATQFKS--------EDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKL  335 (385)
T ss_dssp             ESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCC--------SCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTS
T ss_pred             ECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCc--------CCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhC
Confidence            99999999999999999988789999999976421        3689999998653       1233444545445554 


Q ss_pred             -CeEEEE
Q 029764          124 -GGIAVY  129 (188)
Q Consensus       124 -gG~lv~  129 (188)
                       |+.+.+
T Consensus       336 ~g~~~~i  342 (385)
T 3ldu_A          336 KNWSYYL  342 (385)
T ss_dssp             BSCEEEE
T ss_pred             CCCEEEE
Confidence             655443

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.15  E-value=3.8e-11  Score=95.97  Aligned_cols=98  Identities=14%  Similarity=0.133  Sum_probs=77.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++.+|||||||+|..+..+++..+ +.+++++|+ +++++.+++      . ++++++.+|..+   .+       ..|
T Consensus       208 ~~~~~vLDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~---~~-------~~~  268 (372)
T 1fp1_D          208 EGISTLVDVGGGSGRNLELIISKYP-LIKGINFDL-PQVIENAPP------L-SGIEHVGGDMFA---SV-------PQG  268 (372)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCC------C-TTEEEEECCTTT---CC-------CCE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCC-CCeEEEeCh-HHHHHhhhh------c-CCCEEEeCCccc---CC-------CCC
Confidence            3467999999999999999999987 789999999 888876664      1 359999999865   11       349


Q ss_pred             eEEEEeCCc---cchH--HHHHHHHhccCcCeEEEEeccccC
Q 029764           99 DYAFVDADK---DNYC--NYHERLMKLLKVGGIAVYDNTLWG  135 (188)
Q Consensus        99 D~i~id~~~---~~~~--~~~~~~~~~L~~gG~lv~~~~~~~  135 (188)
                      |+|++....   .+..  .+++++.+.|+|||.+++.+...+
T Consensus       269 D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~  310 (372)
T 1fp1_D          269 DAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILP  310 (372)
T ss_dssp             EEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred             CEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence            999987532   2223  789999999999999999876653

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.15  E-value=1.8e-10  Score=87.51  Aligned_cols=103  Identities=10%  Similarity=0.075  Sum_probs=73.7

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029764            5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   84 (188)
Q Consensus         5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   84 (188)
                      .+...+-+...+...++.+|||||||+|..+..++..   ..+|+++|+++++++.+++++..   .++++++++|+.+.
T Consensus        14 d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avEid~~~~~~~~~~~~~---~~~v~~i~~D~~~~   87 (255)
T 3tqs_A           14 DSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE---CDNLALVEIDRDLVAFLQKKYNQ---QKNITIYQNDALQF   87 (255)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTT---SSEEEEEECCHHHHHHHHHHHTT---CTTEEEEESCTTTC
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHhh---CCCcEEEEcchHhC
Confidence            3445555555556667789999999999999999986   46999999999999999998865   34799999999875


Q ss_pred             -HHHHhhcccCCCceeEEEEeCCccchHHHHHHHH
Q 029764           85 -LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM  118 (188)
Q Consensus        85 -~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~  118 (188)
                       ++.+.    ..++|| |+.+.+..-..+.+..+.
T Consensus        88 ~~~~~~----~~~~~~-vv~NlPY~is~~il~~ll  117 (255)
T 3tqs_A           88 DFSSVK----TDKPLR-VVGNLPYNISTPLLFHLF  117 (255)
T ss_dssp             CGGGSC----CSSCEE-EEEECCHHHHHHHHHHHH
T ss_pred             CHHHhc----cCCCeE-EEecCCcccCHHHHHHHH
Confidence             22221    124688 666654433334444443

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.14  E-value=7.8e-11  Score=93.45  Aligned_cols=99  Identities=9%  Similarity=0.070  Sum_probs=78.6

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..+..+|||||||+|..+..+++.+| +.+++++|+ +++++.+++      . ++++++.+|..+   .       ...
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~---~-------~p~  246 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETFP-KLKCIVFDR-PQVVENLSG------S-NNLTYVGGDMFT---S-------IPN  246 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCC------B-TTEEEEECCTTT---C-------CCC
T ss_pred             cccCceEEEeCCCccHHHHHHHHHCC-CCeEEEeeC-HHHHhhccc------C-CCcEEEeccccC---C-------CCC
Confidence            44567999999999999999999887 789999999 988887764      1 349999999854   1       135


Q ss_pred             eeEEEEeCC---ccchH--HHHHHHHhccCc---CeEEEEeccccC
Q 029764           98 FDYAFVDAD---KDNYC--NYHERLMKLLKV---GGIAVYDNTLWG  135 (188)
Q Consensus        98 ~D~i~id~~---~~~~~--~~~~~~~~~L~~---gG~lv~~~~~~~  135 (188)
                      ||+|++...   ..+..  .+++++.+.|+|   ||.+++.+...+
T Consensus       247 ~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~  292 (352)
T 1fp2_A          247 ADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVID  292 (352)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEEC
T ss_pred             ccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecC
Confidence            999998742   22223  789999999999   999998877653

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.13  E-value=2.1e-09  Score=80.34  Aligned_cols=144  Identities=11%  Similarity=0.038  Sum_probs=95.5

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      ...++.+|||+|||+|-.++.+.   + ..+++++|+++.+++.+++++...+  .+..+.++|.....        ..+
T Consensus       102 ~~~~p~~VLDlGCG~gpLal~~~---~-~~~y~a~DId~~~i~~ar~~~~~~g--~~~~~~v~D~~~~~--------~~~  167 (253)
T 3frh_A          102 SAETPRRVLDIACGLNPLALYER---G-IASVWGCDIHQGLGDVITPFAREKD--WDFTFALQDVLCAP--------PAE  167 (253)
T ss_dssp             SSCCCSEEEEETCTTTHHHHHHT---T-CSEEEEEESBHHHHHHHHHHHHHTT--CEEEEEECCTTTSC--------CCC
T ss_pred             cCCCCCeEEEecCCccHHHHHhc---c-CCeEEEEeCCHHHHHHHHHHHHhcC--CCceEEEeecccCC--------CCC
Confidence            33678899999999999988877   3 7899999999999999999988877  35788888875432        146


Q ss_pred             ceeEEEEeCCcc-----chHHHHHHHHhccCcCeEEEEeccc-cCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCe
Q 029764           97 SFDYAFVDADKD-----NYCNYHERLMKLLKVGGIAVYDNTL-WGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRV  170 (188)
Q Consensus        97 ~~D~i~id~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (188)
                      +||++++--..+     .....+ .+...|++++++|.-++- ..|    +...        +....+...+.......+
T Consensus       168 ~~DvvLllk~lh~LE~q~~~~~~-~ll~aL~~~~vvVsfPtksl~G----r~~g--------m~~~Y~~~~e~~~~~~~~  234 (253)
T 3frh_A          168 AGDLALIFKLLPLLEREQAGSAM-ALLQSLNTPRMAVSFPTRSLGG----RGKG--------MEANYAAWFEGGLPAEFE  234 (253)
T ss_dssp             BCSEEEEESCHHHHHHHSTTHHH-HHHHHCBCSEEEEEEECC-----------------------CHHHHHHHHSCTTEE
T ss_pred             CcchHHHHHHHHHhhhhchhhHH-HHHHHhcCCCEEEEcChHHhcC----CCcc--------hhhHHHHHHHHHhhccch
Confidence            999998762111     112233 667799999988875521 111    1111        222233333333344456


Q ss_pred             EEEEeecCCceEEEEEc
Q 029764          171 QLSHVALGDGITICRRI  187 (188)
Q Consensus       171 ~~~~lp~~~G~~~~~~~  187 (188)
                      ....+-+++-+....++
T Consensus       235 ~~~~~~~~nEl~~~i~~  251 (253)
T 3frh_A          235 IEDKKTIGTELIYLIKK  251 (253)
T ss_dssp             EEEEEEETTEEEEEEEE
T ss_pred             hhhheecCceEEEEEec
Confidence            66677788888777654

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=99.11  E-value=2.5e-10  Score=95.42  Aligned_cols=120  Identities=11%  Similarity=0.022  Sum_probs=91.3

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCC-----------------CCEEEEEeCCchhHHHHHHHHH
Q 029764            4 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-----------------DGQITAIDVNRETYEIGLPIIK   66 (188)
Q Consensus         4 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~-----------------~~~v~~iD~~~~~~~~a~~~~~   66 (188)
                      |++...++|..++...++.+|+|.+||+|...+.++..+..                 ..+++++|+++.++..|+.++.
T Consensus       153 TP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~  232 (541)
T 2ar0_A          153 TPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL  232 (541)
T ss_dssp             CCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHH
Confidence            56677777777776666779999999999998888765421                 1379999999999999999988


Q ss_pred             hcCCCC----cEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCcc-----------------chHHHHHHHHhccCcCe
Q 029764           67 KAGVDH----KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-----------------NYCNYHERLMKLLKVGG  125 (188)
Q Consensus        67 ~~~~~~----~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~-----------------~~~~~~~~~~~~L~~gG  125 (188)
                      ..+...    +..+.++|+......      ...+||+|+.+.+..                 ....++..+.+.|++||
T Consensus       233 l~gi~~~~~~~~~I~~gDtL~~~~~------~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gG  306 (541)
T 2ar0_A          233 LHDIEGNLDHGGAIRLGNTLGSDGE------NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGG  306 (541)
T ss_dssp             TTTCCCBGGGTBSEEESCTTSHHHH------TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEE
T ss_pred             HhCCCccccccCCeEeCCCcccccc------cccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCC
Confidence            777653    277899998764322      146899999985321                 12368899999999999


Q ss_pred             EEEE
Q 029764          126 IAVY  129 (188)
Q Consensus       126 ~lv~  129 (188)
                      .+.+
T Consensus       307 r~a~  310 (541)
T 2ar0_A          307 RAAV  310 (541)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7665

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=99.11  E-value=2.6e-11  Score=92.17  Aligned_cols=84  Identities=8%  Similarity=0.133  Sum_probs=66.1

Q ss_pred             HHHHHcCC--CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcC--------CCCcEEEEEcchHH
Q 029764           14 MLLRLVNA--KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--------VDHKINFIESEALS   83 (188)
Q Consensus        14 ~l~~~~~~--~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--------~~~~~~~~~~d~~~   83 (188)
                      ..+...++  .+|||+|||+|..++.+|+.   +++|+++|.++..+..++++++...        +.++++++++|+.+
T Consensus        80 ~al~l~~g~~~~VLDl~~G~G~dal~lA~~---g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~  156 (258)
T 2oyr_A           80 KAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT  156 (258)
T ss_dssp             HHTTCBTTBCCCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHH
T ss_pred             HHhcccCCCCCEEEEcCCcCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHH
Confidence            33444556  79999999999999999986   5689999999998888877765432        22479999999988


Q ss_pred             HHHHHhhcccCCCceeEEEEeCC
Q 029764           84 VLDQLLKYSENEGSFDYAFVDAD  106 (188)
Q Consensus        84 ~~~~~~~~~~~~~~~D~i~id~~  106 (188)
                      .++.+      ..+||+||+|..
T Consensus       157 ~L~~~------~~~fDvV~lDP~  173 (258)
T 2oyr_A          157 ALTDI------TPRPQVVYLDPM  173 (258)
T ss_dssp             HSTTC------SSCCSEEEECCC
T ss_pred             HHHhC------cccCCEEEEcCC
Confidence            76554      247999999963

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=99.08  E-value=1.2e-09  Score=86.64  Aligned_cols=120  Identities=15%  Similarity=0.083  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCC-----CcEEEEEcchH
Q 029764            8 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-----HKINFIESEAL   82 (188)
Q Consensus         8 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-----~~~~~~~~d~~   82 (188)
                      ...+...++...++.+|||++++.|.=|..+|...+ ++.|+++|+++..++..++++++.+..     .++.+...|+.
T Consensus       136 aS~l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~-~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~  214 (359)
T 4fzv_A          136 ASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGC-CRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGR  214 (359)
T ss_dssp             GGHHHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTC-EEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGG
T ss_pred             HHHHHHHHhCCCCCCEEEEecCCccHHHHHHHHhcC-CCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchh
Confidence            345556666777888999999999999999998765 678999999999999999999987653     46888999987


Q ss_pred             HHHHHHhhcccCCCceeEEEEeCCccc---------------------------hHHHHHHHHhccCcCeEEEEecccc
Q 029764           83 SVLDQLLKYSENEGSFDYAFVDADKDN---------------------------YCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        83 ~~~~~~~~~~~~~~~~D~i~id~~~~~---------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      ......      .+.||.|++|++.+.                           ...+++.++++|||||.||......
T Consensus       215 ~~~~~~------~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl  287 (359)
T 4fzv_A          215 KWGELE------GDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL  287 (359)
T ss_dssp             GHHHHS------TTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred             hcchhc------cccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Confidence            654322      478999999964221                           1356777889999999999866654

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.05  E-value=3.2e-10  Score=90.10  Aligned_cols=98  Identities=12%  Similarity=0.064  Sum_probs=77.6

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..+..+|||||||+|..+..+++..+ +.+++++|+ +.+++.+++      . .+++++.+|..+   .       ..+
T Consensus       191 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~---~-------~~~  251 (358)
T 1zg3_A          191 FEGLESLVDVGGGTGGVTKLIHEIFP-HLKCTVFDQ-PQVVGNLTG------N-ENLNFVGGDMFK---S-------IPS  251 (358)
T ss_dssp             HHTCSEEEEETCTTSHHHHHHHHHCT-TSEEEEEEC-HHHHSSCCC------C-SSEEEEECCTTT---C-------CCC
T ss_pred             ccCCCEEEEECCCcCHHHHHHHHHCC-CCeEEEecc-HHHHhhccc------C-CCcEEEeCccCC---C-------CCC
Confidence            34668999999999999999999987 789999999 788776653      2 359999999864   1       145


Q ss_pred             eeEEEEeCC---ccc--hHHHHHHHHhccCc---CeEEEEecccc
Q 029764           98 FDYAFVDAD---KDN--YCNYHERLMKLLKV---GGIAVYDNTLW  134 (188)
Q Consensus        98 ~D~i~id~~---~~~--~~~~~~~~~~~L~~---gG~lv~~~~~~  134 (188)
                      ||+|++...   ..+  ...+++++.+.|+|   ||.+++.+...
T Consensus       252 ~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~  296 (358)
T 1zg3_A          252 ADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISI  296 (358)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEE
T ss_pred             ceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEecc
Confidence            999998743   223  33889999999999   99999877665

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.04  E-value=1.2e-09  Score=83.66  Aligned_cols=111  Identities=11%  Similarity=-0.023  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029764            6 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   85 (188)
Q Consensus         6 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   85 (188)
                      +...+-+...+...++ +|||||||+|..+..++..   +.+|+++|+++++++.+++++..    .+++++++|+.+.-
T Consensus        33 ~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~---~~~V~avEid~~~~~~l~~~~~~----~~v~vi~~D~l~~~  104 (271)
T 3fut_A           33 EAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEA---GAEVTAIEKDLRLRPVLEETLSG----LPVRLVFQDALLYP  104 (271)
T ss_dssp             HHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHT---TCCEEEEESCGGGHHHHHHHTTT----SSEEEEESCGGGSC
T ss_pred             HHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHc---CCEEEEEECCHHHHHHHHHhcCC----CCEEEEECChhhCC
Confidence            3344444444455667 9999999999999999986   46999999999999999998752    47999999997751


Q ss_pred             HHHhhcccCCCceeEEEEeCCccchHHHHHHHHhc-cCcCeEEEEe
Q 029764           86 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL-LKVGGIAVYD  130 (188)
Q Consensus        86 ~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~-L~~gG~lv~~  130 (188)
                        +.    +...+|.|+.+.+..-..+++..+... .-..+++++.
T Consensus       105 --~~----~~~~~~~iv~NlPy~iss~il~~ll~~~~~~~~~lm~Q  144 (271)
T 3fut_A          105 --WE----EVPQGSLLVANLPYHIATPLVTRLLKTGRFARLVFLVQ  144 (271)
T ss_dssp             --GG----GSCTTEEEEEEECSSCCHHHHHHHHHHCCEEEEEEEEE
T ss_pred             --hh----hccCccEEEecCcccccHHHHHHHhcCCCCCEEEEEee
Confidence              11    013689998875443334444444332 1134555553

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.02  E-value=1.5e-09  Score=81.93  Aligned_cols=63  Identities=17%  Similarity=0.212  Sum_probs=53.4

Q ss_pred             HHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029764           16 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   84 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   84 (188)
                      +...++.+|||+|||+|..+..++..   +.+++++|+++++++.+++++...   ++++++++|+.+.
T Consensus        26 ~~~~~~~~VLDiG~G~G~lt~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~---~~v~~~~~D~~~~   88 (244)
T 1qam_A           26 IRLNEHDNIFEIGSGKGHFTLELVQR---CNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQF   88 (244)
T ss_dssp             CCCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGC
T ss_pred             CCCCCCCEEEEEeCCchHHHHHHHHc---CCeEEEEECCHHHHHHHHHhhccC---CCeEEEEChHHhC
Confidence            34456779999999999999999987   469999999999999999987542   4799999998764

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.00  E-value=7.1e-10  Score=85.64  Aligned_cols=90  Identities=13%  Similarity=0.151  Sum_probs=66.7

Q ss_pred             HcCCCEEEEEcccc------hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEE-EEcchHHHHHHHhh
Q 029764           18 LVNAKKTIEIGVFT------GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF-IESEALSVLDQLLK   90 (188)
Q Consensus        18 ~~~~~~vLeiG~g~------G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~   90 (188)
                      ..++.+|||+|||+      |.  ..+++..+++++|+++|+++. +             +++++ +++|..+..  +  
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v-------------~~v~~~i~gD~~~~~--~--  120 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V-------------SDADSTLIGDCATVH--T--  120 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B-------------CSSSEEEESCGGGCC--C--
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C-------------CCCEEEEECccccCC--c--
Confidence            45667999999944      66  445666665689999999998 1             25778 999986531  1  


Q ss_pred             cccCCCceeEEEEeCCcc--------------chHHHHHHHHhccCcCeEEEEec
Q 029764           91 YSENEGSFDYAFVDADKD--------------NYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        91 ~~~~~~~~D~i~id~~~~--------------~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                          .++||+|+++....              .....++.+.++|||||.+++..
T Consensus       121 ----~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~  171 (290)
T 2xyq_A          121 ----ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKI  171 (290)
T ss_dssp             ----SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ----cCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence                36899999974321              13467889999999999999863

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.00  E-value=7.8e-11  Score=90.56  Aligned_cols=98  Identities=7%  Similarity=-0.021  Sum_probs=68.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHH-HhcCCCCcEEEE--EcchHHHHHHHhhcccCC
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII-KKAGVDHKINFI--ESEALSVLDQLLKYSENE   95 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~-~~~~~~~~~~~~--~~d~~~~~~~~~~~~~~~   95 (188)
                      .++.+|||+|||+|..+..+++.    ++|+++|+++ +...+++.. .......++.++  ++|+.+.         ..
T Consensus        81 ~~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l---------~~  146 (276)
T 2wa2_A           81 ELKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKM---------EP  146 (276)
T ss_dssp             CCCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGC---------CC
T ss_pred             CCCCEEEEeccCCCHHHHHHHHc----CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhC---------CC
Confidence            35679999999999999999885    5899999998 533322210 000111268888  8888652         13


Q ss_pred             CceeEEEEeCCc--cc-----h--HHHHHHHHhccCcCe--EEEEe
Q 029764           96 GSFDYAFVDADK--DN-----Y--CNYHERLMKLLKVGG--IAVYD  130 (188)
Q Consensus        96 ~~~D~i~id~~~--~~-----~--~~~~~~~~~~L~~gG--~lv~~  130 (188)
                      ++||+|++|...  ..     .  ...++.+.++|+|||  .+++.
T Consensus       147 ~~fD~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~  192 (276)
T 2wa2_A          147 FQADTVLCDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVK  192 (276)
T ss_dssp             CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred             CCcCEEEECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEE
Confidence            789999998531  01     1  136788889999999  88885

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.97  E-value=5.9e-10  Score=86.83  Aligned_cols=96  Identities=9%  Similarity=0.016  Sum_probs=66.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeC----CchhHHHHHHHHHhcCCCCcEEEEEc-chHHHHHHHhhccc
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDV----NRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSE   93 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~----~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~   93 (188)
                      .++.+|||+|||+|..+..+++.    ++|+++|+    ++..++.+.  .+..+ .+++.++++ |..+.         
T Consensus        81 ~~g~~VLDlGcG~G~~s~~la~~----~~V~gvD~~~~~~~~~~~~~~--~~~~~-~~~v~~~~~~D~~~l---------  144 (305)
T 2p41_A           81 TPEGKVVDLGCGRGGWSYYCGGL----KNVREVKGLTKGGPGHEEPIP--MSTYG-WNLVRLQSGVDVFFI---------  144 (305)
T ss_dssp             CCCEEEEEETCTTSHHHHHHHTS----TTEEEEEEECCCSTTSCCCCC--CCSTT-GGGEEEECSCCTTTS---------
T ss_pred             CCCCEEEEEcCCCCHHHHHHHhc----CCEEEEeccccCchhHHHHHH--hhhcC-CCCeEEEeccccccC---------
Confidence            34579999999999999999985    48999999    454332111  11111 146899988 77543         


Q ss_pred             CCCceeEEEEeCCcc--c----h---HHHHHHHHhccCcCeEEEEe
Q 029764           94 NEGSFDYAFVDADKD--N----Y---CNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        94 ~~~~~D~i~id~~~~--~----~---~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ...+||+|++|....  .    .   ...+..+.++|+|||.+++.
T Consensus       145 ~~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~k  190 (305)
T 2p41_A          145 PPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK  190 (305)
T ss_dssp             CCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             CcCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            136899999986431  1    1   14677788999999999984

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.96  E-value=1.1e-10  Score=89.33  Aligned_cols=99  Identities=11%  Similarity=-0.020  Sum_probs=67.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHH-HhcCCCCcEEEE--EcchHHHHHHHhhcccCC
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII-KKAGVDHKINFI--ESEALSVLDQLLKYSENE   95 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~-~~~~~~~~~~~~--~~d~~~~~~~~~~~~~~~   95 (188)
                      .++.+|||+|||+|.++..+++.    ++|+++|+++ +...+++.. .......++.++  ++|+.+.         ..
T Consensus        73 ~~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l---------~~  138 (265)
T 2oxt_A           73 ELTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTL---------PV  138 (265)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTS---------CC
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHC---------CC
Confidence            35679999999999999999875    5899999998 432222110 000011158888  8888652         13


Q ss_pred             CceeEEEEeCCc--cc-----h--HHHHHHHHhccCcCe--EEEEec
Q 029764           96 GSFDYAFVDADK--DN-----Y--CNYHERLMKLLKVGG--IAVYDN  131 (188)
Q Consensus        96 ~~~D~i~id~~~--~~-----~--~~~~~~~~~~L~~gG--~lv~~~  131 (188)
                      ++||+|++|...  .+     .  ...++.+.++|+|||  .+++..
T Consensus       139 ~~fD~V~sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv  185 (265)
T 2oxt_A          139 ERTDVIMCDVGESSPKWSVESERTIKILELLEKWKVKNPSADFVVKV  185 (265)
T ss_dssp             CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             CCCcEEEEeCcccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence            689999998531  11     1  136788889999999  888853

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.92  E-value=6.4e-09  Score=79.94  Aligned_cols=106  Identities=10%  Similarity=0.066  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029764            6 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   84 (188)
Q Consensus         6 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   84 (188)
                      +...+-+...+...++.+|||||||+|..+..++...+. +++|+++|+++++++.++++.     .++++++++|+.+.
T Consensus        28 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~D~~~~  102 (279)
T 3uzu_A           28 HGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-----GELLELHAGDALTF  102 (279)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEESCGGGC
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEECChhcC
Confidence            344444444455667789999999999999999987542 245999999999999999983     24799999999874


Q ss_pred             -HHHHhhcccCCCceeEEEEeCCccchHHHHHHHH
Q 029764           85 -LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM  118 (188)
Q Consensus        85 -~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~  118 (188)
                       ++.+.+.  .....+.|+.+.+..-..+++..+.
T Consensus       103 ~~~~~~~~--~~~~~~~vv~NlPY~iss~il~~ll  135 (279)
T 3uzu_A          103 DFGSIARP--GDEPSLRIIGNLPYNISSPLLFHLM  135 (279)
T ss_dssp             CGGGGSCS--SSSCCEEEEEECCHHHHHHHHHHHG
T ss_pred             ChhHhccc--ccCCceEEEEccCccccHHHHHHHH
Confidence             2222100  0002345666654433344444443

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.87  E-value=8.2e-10  Score=92.30  Aligned_cols=119  Identities=11%  Similarity=0.102  Sum_probs=88.5

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCC--------------CCEEEEEeCCchhHHHHHHHHHhcC
Q 029764            4 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE--------------DGQITAIDVNRETYEIGLPIIKKAG   69 (188)
Q Consensus         4 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~--------------~~~v~~iD~~~~~~~~a~~~~~~~~   69 (188)
                      |++...++|..++...+. +|+|.+||+|...+.++..+..              ...++++|+++.++..|+.++...+
T Consensus       229 TP~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g  307 (544)
T 3khk_A          229 TPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRG  307 (544)
T ss_dssp             CCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhC
Confidence            678888888888765443 9999999999988877654320              3589999999999999999998888


Q ss_pred             CCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCccc--------------------------------hHHHHHHH
Q 029764           70 VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--------------------------------YCNYHERL  117 (188)
Q Consensus        70 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~--------------------------------~~~~~~~~  117 (188)
                      +..++.+.++|++... ..     ...+||+|+.+.+...                                ...++..+
T Consensus       308 i~~~i~i~~gDtL~~~-~~-----~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~  381 (544)
T 3khk_A          308 IDFNFGKKNADSFLDD-QH-----PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHM  381 (544)
T ss_dssp             CCCBCCSSSCCTTTSC-SC-----TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHH
T ss_pred             CCcccceeccchhcCc-cc-----ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHH
Confidence            7765555788875421 11     1368999998743210                                12588999


Q ss_pred             HhccCcCeEEEE
Q 029764          118 MKLLKVGGIAVY  129 (188)
Q Consensus       118 ~~~L~~gG~lv~  129 (188)
                      .+.|++||.+.+
T Consensus       382 l~~Lk~gGr~ai  393 (544)
T 3khk_A          382 LYHLAPTGSMAL  393 (544)
T ss_dssp             HHTEEEEEEEEE
T ss_pred             HHHhccCceEEE
Confidence            999999998554

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.87  E-value=1.4e-08  Score=76.91  Aligned_cols=111  Identities=16%  Similarity=0.114  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH-
Q 029764            6 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-   84 (188)
Q Consensus         6 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-   84 (188)
                      +...+-+...+...++.+|||||||+|..+..++.. + ..+++++|+++++++.++++    + ..+++++++|+.+. 
T Consensus        17 ~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~-~-~~~v~avEid~~~~~~~~~~----~-~~~v~~i~~D~~~~~   89 (249)
T 3ftd_A           17 EGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQH-P-LKKLYVIELDREMVENLKSI----G-DERLEVINEDASKFP   89 (249)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTS-C-CSEEEEECCCHHHHHHHTTS----C-CTTEEEECSCTTTCC
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHhc----c-CCCeEEEEcchhhCC
Confidence            333344444445556789999999999999999986 2 47999999999999999876    1 24799999999764 


Q ss_pred             HHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhcc--CcCeEEEEe
Q 029764           85 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL--KVGGIAVYD  130 (188)
Q Consensus        85 ~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L--~~gG~lv~~  130 (188)
                      ++..      ...+ .|+.+.+..-..+.+..+.+..  -+.+++++.
T Consensus        90 ~~~~------~~~~-~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m~Q  130 (249)
T 3ftd_A           90 FCSL------GKEL-KVVGNLPYNVASLIIENTVYNKDCVPLAVFMVQ  130 (249)
T ss_dssp             GGGS------CSSE-EEEEECCTTTHHHHHHHHHHTGGGCSEEEEEEE
T ss_pred             hhHc------cCCc-EEEEECchhccHHHHHHHHhcCCCCceEEEEEe
Confidence            2221      1233 6666655544455555554432  345566654

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.86  E-value=6.6e-09  Score=86.72  Aligned_cols=121  Identities=14%  Similarity=0.080  Sum_probs=93.0

Q ss_pred             CcHHHHHHHHHHHH----HcCCCEEEEEcccchHHHHHHHhhCC--CCCEEEEEeCCchhHHHHHHHHHhcCCC-CcEEE
Q 029764            4 TAPDAGQLMAMLLR----LVNAKKTIEIGVFTGYSLLLTALTIP--EDGQITAIDVNRETYEIGLPIIKKAGVD-HKINF   76 (188)
Q Consensus         4 ~~~~~~~~l~~l~~----~~~~~~vLeiG~g~G~~~~~la~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~   76 (188)
                      |++...++|..++.    ..++.+|+|.+||+|...+.+++.+.  ....++|+|+++.++..|+.++...|.. +++.+
T Consensus       201 TP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I  280 (542)
T 3lkd_A          201 TPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFL  280 (542)
T ss_dssp             CCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred             ccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccce
Confidence            67888899988887    34567999999999999888888763  2568999999999999999998888875 46889


Q ss_pred             EEcchHHHH-HHHhhcccCCCceeEEEEeCCcc-----------c---------------hHHHHHHHHhccC-cCeEEE
Q 029764           77 IESEALSVL-DQLLKYSENEGSFDYAFVDADKD-----------N---------------YCNYHERLMKLLK-VGGIAV  128 (188)
Q Consensus        77 ~~~d~~~~~-~~~~~~~~~~~~~D~i~id~~~~-----------~---------------~~~~~~~~~~~L~-~gG~lv  128 (188)
                      .++|.+..- +..     ...+||+|+.+.+..           +               ...++..+.+.|+ +||.+.
T Consensus       281 ~~gDtL~~d~p~~-----~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a  355 (542)
T 3lkd_A          281 HNADTLDEDWPTQ-----EPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMA  355 (542)
T ss_dssp             EESCTTTSCSCCS-----SCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEE
T ss_pred             Eecceeccccccc-----ccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEE
Confidence            999986430 111     246899999873210           0               1247889999999 999864


Q ss_pred             E
Q 029764          129 Y  129 (188)
Q Consensus       129 ~  129 (188)
                      +
T Consensus       356 ~  356 (542)
T 3lkd_A          356 I  356 (542)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.86  E-value=1.3e-08  Score=77.16  Aligned_cols=105  Identities=12%  Similarity=0.008  Sum_probs=69.0

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029764            5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   84 (188)
Q Consensus         5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   84 (188)
                      .+...+.+...+...++.+|||||||+|..+. ++. .+ ..+|+++|+++++++.+++++...   ++++++++|+.+.
T Consensus         6 d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~~-~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~~~   79 (252)
T 1qyr_A            6 DQFVIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG-ER-LDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTF   79 (252)
T ss_dssp             CHHHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-TT-CSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGC
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-CC-CCeEEEEECCHHHHHHHHHHhccC---CceEEEECchhhC
Confidence            34444444445556677799999999999999 654 22 233999999999999999876542   4799999999873


Q ss_pred             -HHHHhhcccCCCceeEEEEeCCccchHHHHHHHH
Q 029764           85 -LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM  118 (188)
Q Consensus        85 -~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~  118 (188)
                       ++...+.   .+..|.|+.+.+..-..+.+..+.
T Consensus        80 ~~~~~~~~---~~~~~~vvsNlPY~i~~~il~~ll  111 (252)
T 1qyr_A           80 NFGELAEK---MGQPLRVFGNLPYNISTPLMFHLF  111 (252)
T ss_dssp             CHHHHHHH---HTSCEEEEEECCTTTHHHHHHHHH
T ss_pred             CHHHhhcc---cCCceEEEECCCCCccHHHHHHHH
Confidence             3332110   023567777765443344444333

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.84  E-value=1.3e-10  Score=87.66  Aligned_cols=108  Identities=15%  Similarity=0.171  Sum_probs=74.8

Q ss_pred             HHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029764           10 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   89 (188)
Q Consensus        10 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   89 (188)
                      +.+...+...++.+|||+|||+|..+..++..   +.+++++|+++++++.+++++.   ..++++++++|+.+..  +.
T Consensus        19 ~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~---~~~v~~id~~~~~~~~a~~~~~---~~~~v~~~~~D~~~~~--~~   90 (245)
T 1yub_A           19 NQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI---SKQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQFQ--FP   90 (245)
T ss_dssp             HHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH---SSEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTTTT--CC
T ss_pred             HHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHh---CCeEEEEECCHHHHHHHHHHhc---cCCceEEEECChhhcC--cc
Confidence            33333334456679999999999999999987   4699999999999999988765   2357999999987641  10


Q ss_pred             hcccCCCceeEEEEeCCccc----hHH----------HH----HHHHhccCcCeEEEEe
Q 029764           90 KYSENEGSFDYAFVDADKDN----YCN----------YH----ERLMKLLKVGGIAVYD  130 (188)
Q Consensus        90 ~~~~~~~~~D~i~id~~~~~----~~~----------~~----~~~~~~L~~gG~lv~~  130 (188)
                          ..++| .|+.+.+...    ...          .+    +.+.++|++||.+.+.
T Consensus        91 ----~~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~  144 (245)
T 1yub_A           91 ----NKQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLL  144 (245)
T ss_dssp             ----CSSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHH
T ss_pred             ----cCCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhh
Confidence                12568 6666642211    111          22    5577899999986653

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.83  E-value=5.8e-09  Score=89.68  Aligned_cols=118  Identities=14%  Similarity=0.107  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhC---CC--------------------------------------C
Q 029764            7 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI---PE--------------------------------------D   45 (188)
Q Consensus         7 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~---~~--------------------------------------~   45 (188)
                      ..+..|-.++...++..++|.+||+|..++..|...   ++                                      .
T Consensus       177 ~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~  256 (703)
T 3v97_A          177 TLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYS  256 (703)
T ss_dssp             HHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCC
Confidence            334444444444566789999999999988877542   11                                      2


Q ss_pred             CEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCc-------cchHHHHHHH-
Q 029764           46 GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-------DNYCNYHERL-  117 (188)
Q Consensus        46 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~-------~~~~~~~~~~-  117 (188)
                      .+++++|+++++++.|++|+...|+.+.+++.++|+.+..+..     ..++||+|+++.+.       .....+...+ 
T Consensus       257 ~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~-----~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~  331 (703)
T 3v97_A          257 SHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPL-----PKGPYGTVLSNPPYGERLDSEPALIALHSLLG  331 (703)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSC-----TTCCCCEEEECCCCCC---CCHHHHHHHHHHH
T ss_pred             ccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCcccc-----ccCCCCEEEeCCCccccccchhHHHHHHHHHH
Confidence            5899999999999999999999999888999999997642111     12389999998542       1223333333 


Q ss_pred             --HhccCcCeEEEE
Q 029764          118 --MKLLKVGGIAVY  129 (188)
Q Consensus       118 --~~~L~~gG~lv~  129 (188)
                        .+.+.+||.+.+
T Consensus       332 ~~lk~~~~g~~~~i  345 (703)
T 3v97_A          332 RIMKNQFGGWNLSL  345 (703)
T ss_dssp             HHHHHHCTTCEEEE
T ss_pred             HHHHhhCCCCeEEE
Confidence              344557886554

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.76  E-value=1.4e-08  Score=85.86  Aligned_cols=99  Identities=12%  Similarity=0.079  Sum_probs=74.5

Q ss_pred             CEEEEEcccchHHHHH---HHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           22 KKTIEIGVFTGYSLLL---TALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~---la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      +.|+++|||+|-.+..   .+.......+|++||-++ +...+++....+++.++|+++++|..++  ++      .++.
T Consensus       359 ~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev--~L------PEKV  429 (637)
T 4gqb_A          359 QVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREW--VA------PEKA  429 (637)
T ss_dssp             EEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTC--CC------SSCE
T ss_pred             cEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceec--cC------Cccc
Confidence            4799999999987444   333332234799999987 6778888889999999999999999775  22      4789


Q ss_pred             eEEEEeC-----CccchHHHHHHHHhccCcCeEEEE
Q 029764           99 DYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        99 D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      |+|+...     ..+.....+....+.|||||.++=
T Consensus       430 DIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimiP  465 (637)
T 4gqb_A          430 DIIVSELLGSFADNELSPECLDGAQHFLKDDGVSIP  465 (637)
T ss_dssp             EEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEES
T ss_pred             CEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEcc
Confidence            9998652     223344667777799999999764

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.74  E-value=6.1e-08  Score=83.46  Aligned_cols=121  Identities=12%  Similarity=0.047  Sum_probs=83.0

Q ss_pred             CCcHHHHHHHHHHHH--Hc----CCCEEEEEcccchHHHHHHHhhCC--CCCEEEEEeCCchhHHHH--HHHHHhcCCC-
Q 029764            3 GTAPDAGQLMAMLLR--LV----NAKKTIEIGVFTGYSLLLTALTIP--EDGQITAIDVNRETYEIG--LPIIKKAGVD-   71 (188)
Q Consensus         3 ~~~~~~~~~l~~l~~--~~----~~~~vLeiG~g~G~~~~~la~~~~--~~~~v~~iD~~~~~~~~a--~~~~~~~~~~-   71 (188)
                      .|+++.+++|..++.  ..    ++.+|+|.|||+|...+.++..++  ...+++++|+++.++..|  +.++....+. 
T Consensus       298 YTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~Llh  377 (878)
T 3s1s_A          298 PTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVS  377 (878)
T ss_dssp             SCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCB
T ss_pred             cCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhc
Confidence            467888888888732  22    356999999999999999998764  135799999999999999  5554432221 


Q ss_pred             --CcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCcc--------------------------------chHHHHHHH
Q 029764           72 --HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--------------------------------NYCNYHERL  117 (188)
Q Consensus        72 --~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~--------------------------------~~~~~~~~~  117 (188)
                        +...+..+|..+....      ...+||+|+.+.+..                                .+..+++.+
T Consensus       378 Gi~~~~I~~dD~L~~~~~------~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~A  451 (878)
T 3s1s_A          378 SNNAPTITGEDVCSLNPE------DFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELV  451 (878)
T ss_dssp             TTBCCEEECCCGGGCCGG------GGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHH
T ss_pred             CCCcceEEecchhccccc------ccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHH
Confidence              1234555665442111      136899999885320                                023467788


Q ss_pred             HhccCcCeEEEE
Q 029764          118 MKLLKVGGIAVY  129 (188)
Q Consensus       118 ~~~L~~gG~lv~  129 (188)
                      .++|++||.+.+
T Consensus       452 l~lLKpGGrLAf  463 (878)
T 3s1s_A          452 TELVQDGTVISA  463 (878)
T ss_dssp             HHHSCTTCEEEE
T ss_pred             HHhcCCCcEEEE
Confidence            899999998766

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.70  E-value=3.8e-08  Score=83.48  Aligned_cols=106  Identities=10%  Similarity=-0.044  Sum_probs=73.4

Q ss_pred             CCEEEEEcccchHHHHHHHhhCC------------CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029764           21 AKKTIEIGVFTGYSLLLTALTIP------------EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   88 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~~------------~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   88 (188)
                      .+.|||+|||+|-.+...+.+..            ...+|++||.++.++...+... .+++.++++++++|..++-...
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~-~Ng~~d~VtVI~gd~eev~lp~  488 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMN-VRTWKRRVTIIESDMRSLPGIA  488 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHH-HHTTTTCSEEEESCGGGHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHH-hcCCCCeEEEEeCchhhccccc
Confidence            45899999999998643322211            1349999999997776555544 3788889999999998863211


Q ss_pred             hhcccCCCceeEEEEeC--C---ccchHHHHHHHHhccCcCeEEEE
Q 029764           89 LKYSENEGSFDYAFVDA--D---KDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        89 ~~~~~~~~~~D~i~id~--~---~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      ..  ...++.|+|+...  .   .+...+.++...+.|+|||.++=
T Consensus       489 ~~--~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~iP  532 (745)
T 3ua3_A          489 KD--RGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISIP  532 (745)
T ss_dssp             HH--TTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEES
T ss_pred             cc--CCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEEC
Confidence            11  0147899998763  2   23344667777789999998764

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.69  E-value=7.1e-09  Score=73.95  Aligned_cols=90  Identities=9%  Similarity=0.117  Sum_probs=67.4

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..++.+||++|||.                 +++|+++++++.|+++..     .+++++++|..+....  .  ...++
T Consensus        10 ~~~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~-----~~~~~~~~d~~~~~~~--~--~~~~~   63 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTG-----NEGRVSVENIKQLLQS--A--HKESS   63 (176)
T ss_dssp             CCTTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTT-----TTSEEEEEEGGGGGGG--C--CCSSC
T ss_pred             CCCCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhcc-----cCcEEEEechhcCccc--c--CCCCC
Confidence            45678999999975                 238999999999998753     2488999998654210  0  01478


Q ss_pred             eeEEEEeC---Cc-cchHHHHHHHHhccCcCeEEEEeccc
Q 029764           98 FDYAFVDA---DK-DNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        98 ~D~i~id~---~~-~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      ||+|++..   +. .+...+++++.++|||||.+++.+..
T Consensus        64 fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~  103 (176)
T 2ld4_A           64 FDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPV  103 (176)
T ss_dssp             EEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EeEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEccc
Confidence            99999853   22 56688999999999999999996544

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.67  E-value=1.6e-07  Score=71.70  Aligned_cols=84  Identities=7%  Similarity=0.035  Sum_probs=66.5

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      ...++..++|++||.|..+..+++.   +++|+++|.+|++++.+++ ++.    +++++++++..++-..+...  ...
T Consensus        19 ~~~~gg~~VD~T~G~GGHS~~il~~---~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l~~~L~~~--g~~   88 (285)
T 1wg8_A           19 AVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHLKRHLAAL--GVE   88 (285)
T ss_dssp             TCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGHHHHHHHT--TCS
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHHHC---CCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchHHHHHHHc--CCC
Confidence            3456779999999999999999986   6799999999999999998 643    48999999987663333222  135


Q ss_pred             ceeEEEEeCCccch
Q 029764           97 SFDYAFVDADKDNY  110 (188)
Q Consensus        97 ~~D~i~id~~~~~~  110 (188)
                      ++|.|++|...+.+
T Consensus        89 ~vDgIL~DLGvSS~  102 (285)
T 1wg8_A           89 RVDGILADLGVSSF  102 (285)
T ss_dssp             CEEEEEEECSCCHH
T ss_pred             CcCEEEeCCccccc
Confidence            79999999765554

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.65  E-value=6.1e-08  Score=74.02  Aligned_cols=112  Identities=13%  Similarity=0.152  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029764            8 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   87 (188)
Q Consensus         8 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   87 (188)
                      ...++..+.. .++..+||+.+|||..++.+++.   +.+++.+|.+++.++..++|++.   .++++++..|+...+..
T Consensus        80 l~~yf~~l~~-~n~~~~LDlfaGSGaLgiEaLS~---~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~~  152 (283)
T 2oo3_A           80 FLEYISVIKQ-INLNSTLSYYPGSPYFAINQLRS---QDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNA  152 (283)
T ss_dssp             GHHHHHHHHH-HSSSSSCCEEECHHHHHHHHSCT---TSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHH
T ss_pred             HHHHHHHHHH-hcCCCceeEeCCcHHHHHHHcCC---CCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHHH
Confidence            3456665555 45677999999999999998873   57999999999999999999865   35799999999888776


Q ss_pred             HhhcccCCCceeEEEEeCCcc---chHHHHHHHHh--ccCcCeEEEE
Q 029764           88 LLKYSENEGSFDYAFVDADKD---NYCNYHERLMK--LLKVGGIAVY  129 (188)
Q Consensus        88 ~~~~~~~~~~~D~i~id~~~~---~~~~~~~~~~~--~L~~gG~lv~  129 (188)
                      +...   ...||+||+|.+..   .+...++.+.+  .+.++|++++
T Consensus       153 l~~~---~~~fdLVfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~  196 (283)
T 2oo3_A          153 LLPP---PEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCV  196 (283)
T ss_dssp             HCSC---TTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred             hcCC---CCCccEEEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEE
Confidence            6422   34799999997543   45566665543  6678998887

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.58  E-value=4.2e-07  Score=62.51  Aligned_cols=85  Identities=9%  Similarity=0.049  Sum_probs=62.2

Q ss_pred             CCCEEEEEcccch-HHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           20 NAKKTIEIGVFTG-YSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        20 ~~~~vLeiG~g~G-~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      ++.+|||+|||.| ..+..|++..  +..|+++|++|..+.                ++++|.++-..++      -..|
T Consensus        35 ~~~rVlEVG~G~g~~vA~~La~~~--g~~V~atDInp~Av~----------------~v~dDiF~P~~~~------Y~~~   90 (153)
T 2k4m_A           35 PGTRVVEVGAGRFLYVSDYIRKHS--KVDLVLTDIKPSHGG----------------IVRDDITSPRMEI------YRGA   90 (153)
T ss_dssp             SSSEEEEETCTTCCHHHHHHHHHS--CCEEEEECSSCSSTT----------------EECCCSSSCCHHH------HTTE
T ss_pred             CCCcEEEEccCCChHHHHHHHHhC--CCeEEEEECCccccc----------------eEEccCCCCcccc------cCCc
Confidence            4569999999999 6999999742  678999999998766                7777776532222      1589


Q ss_pred             eEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           99 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      |+|+.--++...+..+-.+.+  +-|.-+++.
T Consensus        91 DLIYsirPP~El~~~i~~lA~--~v~adliI~  120 (153)
T 2k4m_A           91 ALIYSIRPPAEIHSSLMRVAD--AVGARLIIK  120 (153)
T ss_dssp             EEEEEESCCTTTHHHHHHHHH--HHTCEEEEE
T ss_pred             CEEEEcCCCHHHHHHHHHHHH--HcCCCEEEE
Confidence            999876666676666666655  445666664

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.30  E-value=1.8e-06  Score=72.00  Aligned_cols=121  Identities=13%  Similarity=0.116  Sum_probs=87.0

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCC------------CCEEEEEeCCchhHHHHHHHHHhcCCC
Q 029764            4 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE------------DGQITAIDVNRETYEIGLPIIKKAGVD   71 (188)
Q Consensus         4 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~------------~~~v~~iD~~~~~~~~a~~~~~~~~~~   71 (188)
                      |++...++|..++...++.+|+|..||+|...+.....+..            ...++|+|+++..+..|+-++--.|..
T Consensus       201 TP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~  280 (530)
T 3ufb_A          201 TPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLE  280 (530)
T ss_dssp             CCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCS
T ss_pred             CcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCc
Confidence            67889999999988888889999999999988776654321            246999999999999999988777764


Q ss_pred             CcEEEEEcchHHHH-HHHhhcccCCCceeEEEEeCCcc-------------------chHHHHHHHHhccC-------cC
Q 029764           72 HKINFIESEALSVL-DQLLKYSENEGSFDYAFVDADKD-------------------NYCNYHERLMKLLK-------VG  124 (188)
Q Consensus        72 ~~~~~~~~d~~~~~-~~~~~~~~~~~~~D~i~id~~~~-------------------~~~~~~~~~~~~L~-------~g  124 (188)
                       ...+..+|+.... ...    ....+||+|+.+.+..                   ....++..+...|+       +|
T Consensus       281 -~~~I~~~dtL~~~~~~~----~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~g  355 (530)
T 3ufb_A          281 -YPRIDPENSLRFPLREM----GDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNG  355 (530)
T ss_dssp             -CCEEECSCTTCSCGGGC----CGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSC
T ss_pred             -cccccccccccCchhhh----cccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCC
Confidence             3467788875421 111    1135799999885321                   12346777777776       68


Q ss_pred             eEEEE
Q 029764          125 GIAVY  129 (188)
Q Consensus       125 G~lv~  129 (188)
                      |.+.+
T Consensus       356 Gr~av  360 (530)
T 3ufb_A          356 GRAAV  360 (530)
T ss_dssp             CEEEE
T ss_pred             ceEEE
Confidence            86544

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=98.27  E-value=4.7e-06  Score=65.08  Aligned_cols=86  Identities=16%  Similarity=0.148  Sum_probs=65.8

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..++..++|..+|.|..+..+++.+.+.++|+++|.++++++.++ .+    ..+++++++++..++...+.+.+ -.++
T Consensus        55 i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL----~~~Rv~lv~~nF~~l~~~L~~~g-~~~~  128 (347)
T 3tka_A           55 IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI----DDPRFSIIHGPFSALGEYVAERD-LIGK  128 (347)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC----CCTTEEEEESCGGGHHHHHHHTT-CTTC
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh----cCCcEEEEeCCHHHHHHHHHhcC-CCCc
Confidence            445679999999999999999998866899999999999999884 33    24689999998876644443220 0136


Q ss_pred             eeEEEEeCCccc
Q 029764           98 FDYAFVDADKDN  109 (188)
Q Consensus        98 ~D~i~id~~~~~  109 (188)
                      +|.|++|...+.
T Consensus       129 vDgILfDLGVSS  140 (347)
T 3tka_A          129 IDGILLDLGVSS  140 (347)
T ss_dssp             EEEEEEECSCCH
T ss_pred             ccEEEECCccCH
Confidence            999999965544

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.09  E-value=1.9e-05  Score=62.56  Aligned_cols=72  Identities=8%  Similarity=0.172  Sum_probs=53.9

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..++.++||+||..|+++..+++.   +++|++||+.+ +-..    +..   .++++++.+|+....+       ....
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~r---g~~V~aVD~~~-l~~~----l~~---~~~V~~~~~d~~~~~~-------~~~~  270 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKR---NMWVYSVDNGP-MAQS----LMD---TGQVTWLREDGFKFRP-------TRSN  270 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHT---TCEEEEECSSC-CCHH----HHT---TTCEEEECSCTTTCCC-------CSSC
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHC---CCEEEEEEhhh-cChh----hcc---CCCeEEEeCccccccC-------CCCC
Confidence            356789999999999999999885   78999999764 2221    111   2479999999876532       2468


Q ss_pred             eeEEEEeCCc
Q 029764           98 FDYAFVDADK  107 (188)
Q Consensus        98 ~D~i~id~~~  107 (188)
                      +|+|++|...
T Consensus       271 ~D~vvsDm~~  280 (375)
T 4auk_A          271 ISWMVCDMVE  280 (375)
T ss_dssp             EEEEEECCSS
T ss_pred             cCEEEEcCCC
Confidence            9999999644

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.00  E-value=3.1e-05  Score=59.78  Aligned_cols=57  Identities=12%  Similarity=0.106  Sum_probs=46.3

Q ss_pred             HHHHHHHHH--cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcC
Q 029764           10 QLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG   69 (188)
Q Consensus        10 ~~l~~l~~~--~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~   69 (188)
                      +++..++..  .++..|||++||+|..++.++..   +.+++++|+++++++.|++++....
T Consensus       223 ~l~~~~i~~~~~~~~~vlD~f~GsGt~~~~a~~~---g~~~~g~e~~~~~~~~a~~r~~~~~  281 (297)
T 2zig_A          223 ELAERLVRMFSFVGDVVLDPFAGTGTTLIAAARW---GRRALGVELVPRYAQLAKERFAREV  281 (297)
T ss_dssp             HHHHHHHHHHCCTTCEEEETTCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHHhc
Confidence            344444433  46779999999999999998774   6799999999999999999987753

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=97.98  E-value=2.9e-06  Score=64.40  Aligned_cols=102  Identities=14%  Similarity=0.148  Sum_probs=61.9

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..+..+|||+|||.|.++..++...+ ...++++|+.-+........ ...+  .++..+.++. +.. .+     ..+.
T Consensus        72 l~~~~~VLDLGaAPGGWSQvAa~~~~-~~~v~g~dVGvDl~~~pi~~-~~~g--~~ii~~~~~~-dv~-~l-----~~~~  140 (277)
T 3evf_A           72 VKLEGRVIDLGCGRGGWCYYAAAQKE-VSGVKGFTLGRDGHEKPMNV-QSLG--WNIITFKDKT-DIH-RL-----EPVK  140 (277)
T ss_dssp             SCCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTCCCCCCC-CBTT--GGGEEEECSC-CTT-TS-----CCCC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcC-CCcceeEEEeccCccccccc-CcCC--CCeEEEeccc-eeh-hc-----CCCC
Confidence            34556899999999999999887543 45778888764431100000 0001  1334445543 111 11     2468


Q ss_pred             eeEEEEeCCcc----ch-----HHHHHHHHhccCcC-eEEEEe
Q 029764           98 FDYAFVDADKD----NY-----CNYHERLMKLLKVG-GIAVYD  130 (188)
Q Consensus        98 ~D~i~id~~~~----~~-----~~~~~~~~~~L~~g-G~lv~~  130 (188)
                      ||+|++|..+.    ..     ..+++.+.+.|+|| |.+|+.
T Consensus       141 ~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~K  183 (277)
T 3evf_A          141 CDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVK  183 (277)
T ss_dssp             CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             ccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence            99999996332    11     12456677999999 999994

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=97.96  E-value=1.6e-05  Score=68.34  Aligned_cols=109  Identities=12%  Similarity=0.048  Sum_probs=73.5

Q ss_pred             CCCEEEEEcccchHHHHHHHhhC-------CC----CCEEEEEeCCchhHHHHHH--------------HHHhcCC----
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTI-------PE----DGQITAIDVNRETYEIGLP--------------IIKKAGV----   70 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~-------~~----~~~v~~iD~~~~~~~~a~~--------------~~~~~~~----   70 (188)
                      +.-+|+|+|.|+|.+.+.+.+.+       |.    ..+++++|..|-..+.+++              .++.++.    
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            34589999999999888776643       11    1579999986644433333              2222211    


Q ss_pred             ------CC---cEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCccch------HHHHHHHHhccCcCeEEEEe
Q 029764           71 ------DH---KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY------CNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        71 ------~~---~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~------~~~~~~~~~~L~~gG~lv~~  130 (188)
                            .+   .++++.||+.+.++++...  ....+|++|+|+-....      .+++..+.+++++||.+...
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~--~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~  210 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTLLPTLDDS--LNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTF  210 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHHGGGCCGG--GTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEES
T ss_pred             ceEEEecCCcEEEEEEccCHHHHHhhcccc--cCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEec
Confidence                  11   4668889999988775211  13689999999743332      68899999999999998763

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.90  E-value=3.1e-05  Score=61.24  Aligned_cols=59  Identities=7%  Similarity=0.046  Sum_probs=49.8

Q ss_pred             CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029764           21 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   84 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   84 (188)
                      +..|||||+|.|..|..|+.... ..+++++|+++..+...++.+ .   .++++++.+|+.++
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~-~~~vvavE~D~~l~~~L~~~~-~---~~~l~ii~~D~l~~  117 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKF-E---GSPLQILKRDPYDW  117 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHT-T---TSSCEEECSCTTCH
T ss_pred             CCEEEEECCCCCHHHHHHHhhCC-CCEEEEEecCHHHHHHHHHhc-c---CCCEEEEECCccch
Confidence            47899999999999999998533 458999999999999888876 2   25799999999765

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.88  E-value=5.5e-06  Score=62.97  Aligned_cols=102  Identities=10%  Similarity=0.004  Sum_probs=62.8

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      +.+..+|||+||+.|.++..++...+ ...++++|+.......+... ..  ...++..+..+. ++ ..+     ....
T Consensus        88 Lk~~~~VLDLGaAPGGWsQvAa~~~g-v~sV~GvdvG~d~~~~pi~~-~~--~g~~ii~~~~~~-dv-~~l-----~~~~  156 (282)
T 3gcz_A           88 VKPTGIVVDLGCGRGGWSYYAASLKN-VKKVMAFTLGVQGHEKPIMR-TT--LGWNLIRFKDKT-DV-FNM-----EVIP  156 (282)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTSCCCCCC-CB--TTGGGEEEECSC-CG-GGS-----CCCC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcC-CCeeeeEEeccCcccccccc-cc--CCCceEEeeCCc-ch-hhc-----CCCC
Confidence            44666999999999999999887544 56788999875532221110 00  111233333322 11 111     2578


Q ss_pred             eeEEEEeCCcc----ch-----HHHHHHHHhccCcC--eEEEEe
Q 029764           98 FDYAFVDADKD----NY-----CNYHERLMKLLKVG--GIAVYD  130 (188)
Q Consensus        98 ~D~i~id~~~~----~~-----~~~~~~~~~~L~~g--G~lv~~  130 (188)
                      +|+|++|..+.    ..     ..+++.+.+.|+||  |.+|+.
T Consensus       157 ~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~K  200 (282)
T 3gcz_A          157 GDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIK  200 (282)
T ss_dssp             CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             cCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Confidence            99999996433    11     13456667899999  999986

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=97.81  E-value=0.00021  Score=55.19  Aligned_cols=106  Identities=15%  Similarity=0.222  Sum_probs=66.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHh---hCCCCC--EEEEEeCCc--------hhHH-HHHHHHHhcCC--CCc--EEEEEcc
Q 029764           19 VNAKKTIEIGVFTGYSLLLTAL---TIPEDG--QITAIDVNR--------ETYE-IGLPIIKKAGV--DHK--INFIESE   80 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~---~~~~~~--~v~~iD~~~--------~~~~-~a~~~~~~~~~--~~~--~~~~~~d   80 (188)
                      .+.-+|+|+|-|+|.+.+....   ...+..  +++++|..+        +... ..+......+.  ..+  +++..+|
T Consensus        95 ~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GD  174 (308)
T 3vyw_A           95 RKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGD  174 (308)
T ss_dssp             CSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESC
T ss_pred             CCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEech
Confidence            3445899999999997644322   212243  567777532        2222 22322333211  123  4578899


Q ss_pred             hHHHHHHHhhcccCCCceeEEEEeC--Cccc----hHHHHHHHHhccCcCeEEEE
Q 029764           81 ALSVLDQLLKYSENEGSFDYAFVDA--DKDN----YCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~D~i~id~--~~~~----~~~~~~~~~~~L~~gG~lv~  129 (188)
                      +.+.++++.     ...+|++|.|+  +..+    ..++++.+.++++|||.++.
T Consensus       175 a~~~l~~l~-----~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laT  224 (308)
T 3vyw_A          175 ARKRIKEVE-----NFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVS  224 (308)
T ss_dssp             HHHHGGGCC-----SCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEE
T ss_pred             HHHHHhhhc-----ccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEE
Confidence            998887762     34799999996  2222    25799999999999999985

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.62  E-value=5.3e-05  Score=58.01  Aligned_cols=100  Identities=11%  Similarity=0.076  Sum_probs=60.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc-chHHHHHHHhhcccCCCc
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSENEGS   97 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~   97 (188)
                      .+..+|||+||+.|.++..+++..+ ...|+++|+.......... ....+ .+.+.+..+ |..    .+     ..+.
T Consensus        80 ~~g~~vlDLGaaPGgWsqva~~~~g-v~sV~Gvdlg~~~~~~P~~-~~~~~-~~iv~~~~~~di~----~l-----~~~~  147 (300)
T 3eld_A           80 RITGRVLDLGCGRGGWSYYAAAQKE-VMSVKGYTLGIEGHEKPIH-MQTLG-WNIVKFKDKSNVF----TM-----PTEP  147 (300)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTSCCCCC-CCBTT-GGGEEEECSCCTT----TS-----CCCC
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHhcC-CceeeeEEecccccccccc-ccccC-CceEEeecCceee----ec-----CCCC
Confidence            3567999999999999999997543 4578899986532110000 00001 012333222 221    11     2468


Q ss_pred             eeEEEEeCCcc----ch-----HHHHHHHHhccCcC-eEEEEe
Q 029764           98 FDYAFVDADKD----NY-----CNYHERLMKLLKVG-GIAVYD  130 (188)
Q Consensus        98 ~D~i~id~~~~----~~-----~~~~~~~~~~L~~g-G~lv~~  130 (188)
                      +|+|++|..+.    ..     ..+++.+.+.|+|| |.+|+.
T Consensus       148 ~DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~K  190 (300)
T 3eld_A          148 SDTLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVK  190 (300)
T ss_dssp             CSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred             cCEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence            99999996433    11     23466667899999 999996

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.61  E-value=1.3e-05  Score=60.10  Aligned_cols=96  Identities=11%  Similarity=0.025  Sum_probs=58.6

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCC---CCEEEEEeC--CchhHHHHHHHHHhcCCCCcEEEEEc-chHHHHHHHhhc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPE---DGQITAIDV--NRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKY   91 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~---~~~v~~iD~--~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~   91 (188)
                      +.++.+|+|+||+.|.++...+...+-   .+.++++|.  .|-...       ..|. +-++++++ |..+.       
T Consensus        71 ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~-------~~Gv-~~i~~~~G~Df~~~-------  135 (269)
T 2px2_A           71 VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQ-------SYGW-NIVTMKSGVDVFYK-------  135 (269)
T ss_dssp             CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCC-------STTG-GGEEEECSCCGGGS-------
T ss_pred             CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCccc-------CCCc-eEEEeeccCCccCC-------
Confidence            445679999999999999999886221   134444452  111000       0010 22466667 88752       


Q ss_pred             ccCCCceeEEEEeCCccc---------hHHHHHHHHhccCcCe-EEEEe
Q 029764           92 SENEGSFDYAFVDADKDN---------YCNYHERLMKLLKVGG-IAVYD  130 (188)
Q Consensus        92 ~~~~~~~D~i~id~~~~~---------~~~~~~~~~~~L~~gG-~lv~~  130 (188)
                        ....+|+|++|..+..         ....++.+.+.|+||| .+++.
T Consensus       136 --~~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvK  182 (269)
T 2px2_A          136 --PSEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIK  182 (269)
T ss_dssp             --CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             --CCCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEE
Confidence              1358999999953311         1124566678999999 88875

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.60  E-value=0.00058  Score=50.65  Aligned_cols=100  Identities=10%  Similarity=0.061  Sum_probs=65.9

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc-chHHHHHHHhhcccCCC
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSENEG   96 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~   96 (188)
                      +.+..+|+|+||+.|.++.+++.... ..+|+++|+-+.-.+.=+ .++..|. +.++|+.+ |....         ...
T Consensus        76 l~~g~~VvDLGaapGGWSq~~a~~~g-~~~V~avdvG~~ghe~P~-~~~s~gw-n~v~fk~gvDv~~~---------~~~  143 (267)
T 3p8z_A           76 VIPEGRVIDLGCGRGGWSYYCAGLKK-VTEVRGYTKGGPGHEEPV-PMSTYGW-NIVKLMSGKDVFYL---------PPE  143 (267)
T ss_dssp             SCCCEEEEEESCTTSHHHHHHHTSTT-EEEEEEECCCSTTSCCCC-CCCCTTT-TSEEEECSCCGGGC---------CCC
T ss_pred             CCCCCEEEEcCCCCCcHHHHHHHhcC-CCEEEEEecCCCCccCcc-hhhhcCc-CceEEEeccceeec---------CCc
Confidence            44666999999999999998887654 468999998654321000 0112232 56999998 87332         136


Q ss_pred             ceeEEEEeCCccc---------hHHHHHHHHhccCcCeEEEEe
Q 029764           97 SFDYAFVDADKDN---------YCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        97 ~~D~i~id~~~~~---------~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      .+|.|++|..+..         ....++.+.+.|++ |-+++.
T Consensus       144 ~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~K  185 (267)
T 3p8z_A          144 KCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIK  185 (267)
T ss_dssp             CCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEE
T ss_pred             cccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEE
Confidence            7999999953322         12355666688888 666663

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.59  E-value=0.00018  Score=54.44  Aligned_cols=57  Identities=11%  Similarity=0.130  Sum_probs=45.0

Q ss_pred             HHHHHHHHH--cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcC
Q 029764           10 QLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG   69 (188)
Q Consensus        10 ~~l~~l~~~--~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~   69 (188)
                      +++..++..  .++..|||.+||+|..++...+.   +.+++++|+++..++.++++++..+
T Consensus       200 ~l~~~~i~~~~~~~~~vlD~f~GsGtt~~~a~~~---gr~~ig~e~~~~~~~~~~~r~~~~~  258 (260)
T 1g60_A          200 DLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKL---GRNFIGCDMNAEYVNQANFVLNQLE  258 (260)
T ss_dssp             HHHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHhcc
Confidence            345444443  46679999999999999887764   6799999999999999999987654

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=97.55  E-value=0.00056  Score=54.48  Aligned_cols=19  Identities=11%  Similarity=0.249  Sum_probs=16.5

Q ss_pred             CCEEEEEcccchHHHHHHH
Q 029764           21 AKKTIEIGVFTGYSLLLTA   39 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la   39 (188)
                      +.+|+|+||++|..|+.++
T Consensus        53 ~~~IaDlGCssG~Nt~~~v   71 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHII   71 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHH
Confidence            4589999999999998874

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=97.49  E-value=0.00074  Score=57.77  Aligned_cols=107  Identities=15%  Similarity=0.122  Sum_probs=70.9

Q ss_pred             CEEEEEcccchHHHHHHHhhC-------C----CCCEEEEEeC---CchhHHHH-----------HHHHHhcCCC-----
Q 029764           22 KKTIEIGVFTGYSLLLTALTI-------P----EDGQITAIDV---NRETYEIG-----------LPIIKKAGVD-----   71 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~-------~----~~~~v~~iD~---~~~~~~~a-----------~~~~~~~~~~-----   71 (188)
                      -+|+|+|.|+|.+.+.....+       |    ...+++++|.   +++.+..+           ++.++.++..     
T Consensus        68 ~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (676)
T 3ps9_A           68 FVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCH  147 (676)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEEE
T ss_pred             eEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCce
Confidence            489999999999877765543       1    1246999998   55544422           2333333210     


Q ss_pred             --------CcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCccc------hHHHHHHHHhccCcCeEEEEe
Q 029764           72 --------HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN------YCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        72 --------~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~------~~~~~~~~~~~L~~gG~lv~~  130 (188)
                              -.+++..+|+.+.++++...  ....+|++|.|+-.+.      ..+++..+.+++++||.+...
T Consensus       148 ~~~~~~~~~~l~l~~gd~~~~l~~~~~~--~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~  218 (676)
T 3ps9_A          148 RLLLDAGRVTLDLWFGDINELTSQLDDS--LNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATF  218 (676)
T ss_dssp             EEEEGGGTEEEEEEESCHHHHGGGBCGG--GTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEES
T ss_pred             EEEecCCcEEEEEecCCHHHHHHhcccc--cCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEec
Confidence                    13457779998888775211  1367999999973211      357889999999999998864

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=97.40  E-value=0.00023  Score=56.84  Aligned_cols=77  Identities=18%  Similarity=0.071  Sum_probs=45.7

Q ss_pred             CCEEEEEcccchHHHHHHHhh-------------C---CCCCEEEEEeCC-----------chhHHHHHHHHHhcCCCCc
Q 029764           21 AKKTIEIGVFTGYSLLLTALT-------------I---PEDGQITAIDVN-----------RETYEIGLPIIKKAGVDHK   73 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~-------------~---~~~~~v~~iD~~-----------~~~~~~a~~~~~~~~~~~~   73 (188)
                      ..+|+|+||++|..|+.+...             .   ++..+|+.-|+-           |...+.+++   ..+...+
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~---~~g~~~~  129 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEK---ENGRKIG  129 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHH---HTCCCTT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhh---hccCCCC
Confidence            468999999999999987765             1   124567777864           222222211   1221112


Q ss_pred             EEEEEcchHHHHHHHhhcccCCCceeEEEEe
Q 029764           74 INFIESEALSVLDQLLKYSENEGSFDYAFVD  104 (188)
Q Consensus        74 ~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id  104 (188)
                      ..|+.+....+..++.    ..+++|+|+..
T Consensus       130 ~~f~~gvpgSFy~rlf----p~~S~d~v~Ss  156 (384)
T 2efj_A          130 SCLIGAMPGSFYSRLF----PEESMHFLHSC  156 (384)
T ss_dssp             SEEEEECCSCTTSCCS----CTTCEEEEEEE
T ss_pred             ceEEEecchhhhhccC----CCCceEEEEec
Confidence            3566665554444442    35899999876

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=97.37  E-value=0.00048  Score=49.56  Aligned_cols=101  Identities=15%  Similarity=0.075  Sum_probs=62.5

Q ss_pred             HHcCCCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           17 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        17 ~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      ...++++||.+|+  |.|..+..++...  +.+|++++.+++..+.+++    .+....+.....+..+.+.+..    .
T Consensus        35 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~--G~~V~~~~~~~~~~~~~~~----~g~~~~~d~~~~~~~~~~~~~~----~  104 (198)
T 1pqw_A           35 RLSPGERVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLSR----LGVEYVGDSRSVDFADEILELT----D  104 (198)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHT----TCCSEEEETTCSTHHHHHHHHT----T
T ss_pred             CCCCCCEEEEeeCCChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEeeCCcHHHHHHHHHHh----C
Confidence            3456789999994  5677777777653  5799999998877665543    3432111111122222222221    1


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      ...+|+++-...    ...++.+.+.|+++|.++.-.
T Consensus       105 ~~~~D~vi~~~g----~~~~~~~~~~l~~~G~~v~~g  137 (198)
T 1pqw_A          105 GYGVDVVLNSLA----GEAIQRGVQILAPGGRFIELG  137 (198)
T ss_dssp             TCCEEEEEECCC----THHHHHHHHTEEEEEEEEECS
T ss_pred             CCCCeEEEECCc----hHHHHHHHHHhccCCEEEEEc
Confidence            247999986543    246788889999999998754

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=97.37  E-value=0.00061  Score=54.95  Aligned_cols=49  Identities=16%  Similarity=0.196  Sum_probs=42.9

Q ss_pred             cCCCEEEEEcccchHHHHHHH-hhCCCCCEEEEEeCCchhHHHHHHHHHh
Q 029764           19 VNAKKTIEIGVFTGYSLLLTA-LTIPEDGQITAIDVNRETYEIGLPIIKK   67 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la-~~~~~~~~v~~iD~~~~~~~~a~~~~~~   67 (188)
                      .++..++|||++.|..+..++ +..++.++|+++|++|..++..+++++.
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~  274 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  274 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence            567799999999999999988 4554347999999999999999999987

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=97.36  E-value=0.00069  Score=53.67  Aligned_cols=103  Identities=18%  Similarity=0.279  Sum_probs=67.3

Q ss_pred             HHcCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764           17 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      ...++.+||-+|+|. |..++.+|+... ..+|+++|.+++..+.+++.    |...-+.....+..+.+.+..     .
T Consensus       187 ~~~~g~~VlV~GaG~vG~~a~qlak~~G-a~~Vi~~~~~~~~~~~a~~l----Ga~~vi~~~~~~~~~~~~~~~-----~  256 (371)
T 1f8f_A          187 KVTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAKQL----GATHVINSKTQDPVAAIKEIT-----D  256 (371)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHHH----TCSEEEETTTSCHHHHHHHHT-----T
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHHc----CCCEEecCCccCHHHHHHHhc-----C
Confidence            455678999999875 778888888753 23799999999888877653    432111111123333333321     2


Q ss_pred             CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764           96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      +.+|+||-....   ...++.+++.|+++|.+++-..
T Consensus       257 gg~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~G~  290 (371)
T 1f8f_A          257 GGVNFALESTGS---PEILKQGVDALGILGKIAVVGA  290 (371)
T ss_dssp             SCEEEEEECSCC---HHHHHHHHHTEEEEEEEEECCC
T ss_pred             CCCcEEEECCCC---HHHHHHHHHHHhcCCEEEEeCC
Confidence            379999854322   3567888999999999987543

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=97.35  E-value=0.001  Score=52.06  Aligned_cols=101  Identities=13%  Similarity=0.169  Sum_probs=68.3

Q ss_pred             HHcCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764           17 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      ...++.+||-+|+|. |..++.+|+..  +.+|+++|.+++..+.+++    .|...-+.....+..+.+.+.      .
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~------~  230 (340)
T 3s2e_A          163 DTRPGQWVVISGIGGLGHVAVQYARAM--GLRVAAVDIDDAKLNLARR----LGAEVAVNARDTDPAAWLQKE------I  230 (340)
T ss_dssp             TCCTTSEEEEECCSTTHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHH------H
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHH----cCCCEEEeCCCcCHHHHHHHh------C
Confidence            455778999999875 88899999876  5699999999988776654    353211111112333333321      2


Q ss_pred             CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764           96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      +.+|.+|....   ....++.+.+.|+++|.+++-..
T Consensus       231 g~~d~vid~~g---~~~~~~~~~~~l~~~G~iv~~G~  264 (340)
T 3s2e_A          231 GGAHGVLVTAV---SPKAFSQAIGMVRRGGTIALNGL  264 (340)
T ss_dssp             SSEEEEEESSC---CHHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCCCEEEEeCC---CHHHHHHHHHHhccCCEEEEeCC
Confidence            48999986543   24567888899999999988543

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=97.31  E-value=0.00096  Score=53.43  Aligned_cols=107  Identities=16%  Similarity=0.137  Sum_probs=68.4

Q ss_pred             HHHcCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch-HHHHHHHhhccc
Q 029764           16 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA-LSVLDQLLKYSE   93 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~   93 (188)
                      +...++.+||-+|+|. |..++.+|+... ..+|+++|.+++.++.+++    .|. +.+.....+. .+.+.++.    
T Consensus       181 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa-~~i~~~~~~~~~~~~~~~~----  250 (398)
T 2dph_A          181 AGVKPGSHVYIAGAGPVGRCAAAGARLLG-AACVIVGDQNPERLKLLSD----AGF-ETIDLRNSAPLRDQIDQIL----  250 (398)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHT----TTC-EEEETTSSSCHHHHHHHHH----
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----cCC-cEEcCCCcchHHHHHHHHh----
Confidence            3456778999999876 788888988753 2399999999988776653    353 1111111232 33333332    


Q ss_pred             CCCceeEEEEeCCccc-----------hHHHHHHHHhccCcCeEEEEecc
Q 029764           94 NEGSFDYAFVDADKDN-----------YCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        94 ~~~~~D~i~id~~~~~-----------~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      ....+|+||-......           ....++.+++.|+++|.+++-..
T Consensus       251 ~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~  300 (398)
T 2dph_A          251 GKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGI  300 (398)
T ss_dssp             SSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSC
T ss_pred             CCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEecc
Confidence            1247999986533221           12467888999999999886543

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.24  E-value=0.0011  Score=50.67  Aligned_cols=101  Identities=13%  Similarity=0.071  Sum_probs=63.9

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc-chHHHHHHHhhcccCCC
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSENEG   96 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~   96 (188)
                      +.+...|||+||+.|.++.+++.... ..+|+++|+-..-.+.=+ .++..+. +.+.++.+ |....         ...
T Consensus        92 l~~~~~VlDLGaapGGwsq~~~~~~g-v~~V~avdvG~~~he~P~-~~~ql~w-~lV~~~~~~Dv~~l---------~~~  159 (321)
T 3lkz_A           92 LEPVGKVIDLGCGRGGWCYYMATQKR-VQEVRGYTKGGPGHEEPQ-LVQSYGW-NIVTMKSGVDVFYR---------PSE  159 (321)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHTTCTT-EEEEEEECCCSTTSCCCC-CCCBTTG-GGEEEECSCCTTSS---------CCC
T ss_pred             CCCCCEEEEeCCCCCcHHHHHHhhcC-CCEEEEEEcCCCCccCcc-hhhhcCC-cceEEEeccCHhhC---------CCC
Confidence            34556999999999999998887653 457999998654211000 0011121 34778877 66332         135


Q ss_pred             ceeEEEEeCCccc---------hHHHHHHHHhccCcC-eEEEEe
Q 029764           97 SFDYAFVDADKDN---------YCNYHERLMKLLKVG-GIAVYD  130 (188)
Q Consensus        97 ~~D~i~id~~~~~---------~~~~~~~~~~~L~~g-G~lv~~  130 (188)
                      .+|+|++|.....         ....++.+.+.|++| |-+++.
T Consensus       160 ~~D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~K  203 (321)
T 3lkz_A          160 CCDTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVK  203 (321)
T ss_dssp             CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             CCCEEEEECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEE
Confidence            7999999953221         123556666888888 877773

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=97.21  E-value=0.0057  Score=47.78  Aligned_cols=104  Identities=16%  Similarity=0.101  Sum_probs=69.3

Q ss_pred             HHcCCCEEEEEcccch-HHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764           17 RLVNAKKTIEIGVFTG-YSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G-~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      ...++.+||-+|+|.+ ..+..+++... +.+|+++|.+++..+.+++    .+...-+.....|..+.+.+..    ..
T Consensus       160 ~~~~g~~VlV~GaG~~g~~a~~~a~~~~-g~~Vi~~~~~~~r~~~~~~----~Ga~~~i~~~~~~~~~~v~~~t----~g  230 (348)
T 4eez_A          160 GVKPGDWQVIFGAGGLGNLAIQYAKNVF-GAKVIAVDINQDKLNLAKK----IGADVTINSGDVNPVDEIKKIT----GG  230 (348)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTS-CCEEEEEESCHHHHHHHHH----TTCSEEEEC-CCCHHHHHHHHT----TS
T ss_pred             CCCCCCEEEEEcCCCccHHHHHHHHHhC-CCEEEEEECcHHHhhhhhh----cCCeEEEeCCCCCHHHHhhhhc----CC
Confidence            4567789999999864 45666666554 6899999999987766554    3433223333445555544442    23


Q ss_pred             CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764           96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      ..+|.++.+...   ...+..+.+.|+++|.+++-..
T Consensus       231 ~g~d~~~~~~~~---~~~~~~~~~~l~~~G~~v~~g~  264 (348)
T 4eez_A          231 LGVQSAIVCAVA---RIAFEQAVASLKPMGKMVAVAV  264 (348)
T ss_dssp             SCEEEEEECCSC---HHHHHHHHHTEEEEEEEEECCC
T ss_pred             CCceEEEEeccC---cchhheeheeecCCceEEEEec
Confidence            568888876533   3467888899999999887543

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=97.19  E-value=0.0022  Score=50.44  Aligned_cols=106  Identities=17%  Similarity=0.223  Sum_probs=68.2

Q ss_pred             HHHcCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           16 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      +...++.+||-+|+|. |..++.+|+... ..+|+++|.+++..+.+++.    |...-+.....+..+.+.+..    .
T Consensus       162 ~~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~~l----Ga~~vi~~~~~~~~~~v~~~t----~  232 (352)
T 3fpc_A          162 ANIKLGDTVCVIGIGPVGLMSVAGANHLG-AGRIFAVGSRKHCCDIALEY----GATDIINYKNGDIVEQILKAT----D  232 (352)
T ss_dssp             TTCCTTCCEEEECCSHHHHHHHHHHHTTT-CSSEEEECCCHHHHHHHHHH----TCCEEECGGGSCHHHHHHHHT----T
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHHh----CCceEEcCCCcCHHHHHHHHc----C
Confidence            4456778999999874 778888888753 23899999999887777653    432111111223333333332    1


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      ...+|+||-....   ...++.+++.|+++|.++.-...
T Consensus       233 g~g~D~v~d~~g~---~~~~~~~~~~l~~~G~~v~~G~~  268 (352)
T 3fpc_A          233 GKGVDKVVIAGGD---VHTFAQAVKMIKPGSDIGNVNYL  268 (352)
T ss_dssp             TCCEEEEEECSSC---TTHHHHHHHHEEEEEEEEECCCC
T ss_pred             CCCCCEEEECCCC---hHHHHHHHHHHhcCCEEEEeccc
Confidence            3479999854322   23577888999999999876543

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=97.19  E-value=0.0039  Score=49.08  Aligned_cols=102  Identities=13%  Similarity=0.074  Sum_probs=67.2

Q ss_pred             HHHcCCCEEEEEcccc-hHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcc---hHHHHHHHhh
Q 029764           16 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESE---ALSVLDQLLK   90 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~   90 (188)
                      +...++.+||-+|+|. |..++.+|+..  +. +|+++|.+++..+.+++    .|..   .++..+   ..+....+.+
T Consensus       167 ~~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~~i~~  237 (356)
T 1pl8_A          167 GGVTLGHKVLVCGAGPIGMVTLLVAKAM--GAAQVVVTDLSATRLSKAKE----IGAD---LVLQISKESPQEIARKVEG  237 (356)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHH----TTCS---EEEECSSCCHHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----hCCC---EEEcCcccccchHHHHHHH
Confidence            3456778999999875 77888888875  45 89999999888776654    3532   223322   2233222221


Q ss_pred             cccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           91 YSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        91 ~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      .  ....+|+||-....   ...++.+++.|+++|.++.-.
T Consensus       238 ~--~~~g~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~G  273 (356)
T 1pl8_A          238 Q--LGCKPEVTIECTGA---EASIQAGIYATRSGGTLVLVG  273 (356)
T ss_dssp             H--HTSCCSEEEECSCC---HHHHHHHHHHSCTTCEEEECS
T ss_pred             H--hCCCCCEEEECCCC---hHHHHHHHHHhcCCCEEEEEe
Confidence            1  02579999865432   345678889999999998754

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.10  E-value=0.0016  Score=49.93  Aligned_cols=89  Identities=13%  Similarity=0.175  Sum_probs=59.0

Q ss_pred             cCCCEEEEEcc------cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcc
Q 029764           19 VNAKKTIEIGV------FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS   92 (188)
Q Consensus        19 ~~~~~vLeiG~------g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~   92 (188)
                      ..+.+|||+|+      ..|..  .+.+..+.++.|+++|+.+=..           ..+  .++++|..+..       
T Consensus       108 p~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~s-----------da~--~~IqGD~~~~~-------  165 (344)
T 3r24_A          108 PYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVS-----------DAD--STLIGDCATVH-------  165 (344)
T ss_dssp             CTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBC-----------SSS--EEEESCGGGEE-------
T ss_pred             cCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCccccc-----------CCC--eEEEccccccc-------
Confidence            34569999996      66763  3334455446999999976331           112  45899964421       


Q ss_pred             cCCCceeEEEEeCCc--------c------chHHHHHHHHhccCcCeEEEEe
Q 029764           93 ENEGSFDYAFVDADK--------D------NYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        93 ~~~~~~D~i~id~~~--------~------~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                       ..++||+|+.|..+        .      -....++-+.+.|++||.+++.
T Consensus       166 -~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVK  216 (344)
T 3r24_A          166 -TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVK  216 (344)
T ss_dssp             -ESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -cCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEE
Confidence             14789999999311        1      1234556677899999999997

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.08  E-value=7.3e-05  Score=59.20  Aligned_cols=106  Identities=12%  Similarity=0.111  Sum_probs=65.6

Q ss_pred             CEEEEEcccchHHHHHHHhh---------------CCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764           22 KKTIEIGVFTGYSLLLTALT---------------IPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   86 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~---------------~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   86 (188)
                      -+|+|+||++|..|+.+...               -++..+|+.-|+-......+-+.+.......+..|..+....+..
T Consensus        53 ~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy~  132 (359)
T 1m6e_X           53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG  132 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred             eEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhhh
Confidence            47999999999988876654               133567888897666555554443321101123455554444333


Q ss_pred             HHhhcccCCCceeEEEEeC---C----c-----------------------------cchHHHHHHHHhccCcCeEEEEe
Q 029764           87 QLLKYSENEGSFDYAFVDA---D----K-----------------------------DNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        87 ~~~~~~~~~~~~D~i~id~---~----~-----------------------------~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ++.    ..+++|+++...   |    +                             .+...+++...+.|+|||.+++.
T Consensus       133 rlf----p~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~  208 (359)
T 1m6e_X          133 RLF----PRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT  208 (359)
T ss_dssp             CCS----CTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred             ccC----CCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence            332    357999998762   1    1                             01123567778999999999986


Q ss_pred             c
Q 029764          131 N  131 (188)
Q Consensus       131 ~  131 (188)
                      -
T Consensus       209 ~  209 (359)
T 1m6e_X          209 I  209 (359)
T ss_dssp             E
T ss_pred             E
Confidence            4

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=97.07  E-value=0.0062  Score=47.54  Aligned_cols=106  Identities=20%  Similarity=0.124  Sum_probs=69.2

Q ss_pred             HHHcCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           16 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      ....++.+||-.|+|. |..++.+|+... ...++++|.+++..+.+++    +|...-+.....+..+....+..    
T Consensus       156 ~~~~~g~~VlV~GaG~vG~~aiq~ak~~G-~~~vi~~~~~~~k~~~a~~----lGa~~~i~~~~~~~~~~~~~~~~----  226 (346)
T 4a2c_A          156 AQGCENKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDISSEKLALAKS----FGAMQTFNSSEMSAPQMQSVLRE----  226 (346)
T ss_dssp             TTCCTTSEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHGG----
T ss_pred             hccCCCCEEEEECCCCcchHHHHHHHHcC-CcEEEEEechHHHHHHHHH----cCCeEEEeCCCCCHHHHHHhhcc----
Confidence            3456778999999864 456777888764 4578899999988776665    45432222222344444444422    


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      ...+|+|+-....   ...++.+.+.+++||.+++....
T Consensus       227 ~~g~d~v~d~~G~---~~~~~~~~~~l~~~G~~v~~g~~  262 (346)
T 4a2c_A          227 LRFNQLILETAGV---PQTVELAVEIAGPHAQLALVGTL  262 (346)
T ss_dssp             GCSSEEEEECSCS---HHHHHHHHHHCCTTCEEEECCCC
T ss_pred             cCCcccccccccc---cchhhhhhheecCCeEEEEEecc
Confidence            3678888754322   45678888999999999986543

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=97.06  E-value=0.0028  Score=49.56  Aligned_cols=104  Identities=13%  Similarity=0.133  Sum_probs=69.7

Q ss_pred             HHcCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764           17 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      ...++.+||-+|+|. |..++.+|+... +.+|+++|.+++..+.+++    .|...-+.. ..+..+.+.++..    .
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g-~~~Vi~~~~~~~~~~~~~~----lGa~~~i~~-~~~~~~~v~~~t~----g  237 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVS-AARVIAVDLDDDRLALARE----VGADAAVKS-GAGAADAIRELTG----G  237 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESCHHHHHHHHH----TTCSEEEEC-STTHHHHHHHHHG----G
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----cCCCEEEcC-CCcHHHHHHHHhC----C
Confidence            456778999999865 778888888764 6799999999988877764    353321111 1233333333321    2


Q ss_pred             CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      ..+|+||-....   ...++.+.+.|+++|.+++-...
T Consensus       238 ~g~d~v~d~~G~---~~~~~~~~~~l~~~G~iv~~G~~  272 (345)
T 3jv7_A          238 QGATAVFDFVGA---QSTIDTAQQVVAVDGHISVVGIH  272 (345)
T ss_dssp             GCEEEEEESSCC---HHHHHHHHHHEEEEEEEEECSCC
T ss_pred             CCCeEEEECCCC---HHHHHHHHHHHhcCCEEEEECCC
Confidence            479998864322   34678889999999999986543

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=97.05  E-value=0.0019  Score=51.18  Aligned_cols=108  Identities=12%  Similarity=0.088  Sum_probs=68.8

Q ss_pred             HHHHcCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029764           15 LLRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   93 (188)
Q Consensus        15 l~~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   93 (188)
                      .+...++.+||-+|+|. |..++.+|+... ..+|+++|.+++..+.+++    +|...-+.....|..+.+.+....  
T Consensus       177 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~i~~~~~~--  249 (370)
T 4ej6_A          177 LSGIKAGSTVAILGGGVIGLLTVQLARLAG-ATTVILSTRQATKRRLAEE----VGATATVDPSAGDVVEAIAGPVGL--  249 (370)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCHHHHHHHHH----HTCSEEECTTSSCHHHHHHSTTSS--
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCCCEEECCCCcCHHHHHHhhhhc--
Confidence            34566788999999875 778888888753 2389999999988777765    353211111122333333220001  


Q ss_pred             CCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764           94 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        94 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      ..+.+|+||-...   ....++.+.+.|++||.+++-..
T Consensus       250 ~~gg~Dvvid~~G---~~~~~~~~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          250 VPGGVDVVIECAG---VAETVKQSTRLAKAGGTVVILGV  285 (370)
T ss_dssp             STTCEEEEEECSC---CHHHHHHHHHHEEEEEEEEECSC
T ss_pred             cCCCCCEEEECCC---CHHHHHHHHHHhccCCEEEEEec
Confidence            1248999985432   23467888899999999988544

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=97.03  E-value=0.0056  Score=48.89  Aligned_cols=106  Identities=14%  Similarity=0.096  Sum_probs=67.8

Q ss_pred             HHcCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcc-hHHHHHHHhhcccC
Q 029764           17 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE-ALSVLDQLLKYSEN   94 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~~   94 (188)
                      ...++.+||-+|+|. |..++.+|+... ..+|+++|.+++.++.+++    +|. +.+.....+ ..+.+.+..    .
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~G-a~~Vi~~~~~~~~~~~a~~----lGa-~~i~~~~~~~~~~~v~~~t----~  251 (398)
T 1kol_A          182 GVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAKA----QGF-EIADLSLDTPLHEQIAALL----G  251 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH----TTC-EEEETTSSSCHHHHHHHHH----S
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCC-CCeEEEEcCCHHHHHHHHH----cCC-cEEccCCcchHHHHHHHHh----C
Confidence            455778999999865 778888998763 2389999999988877754    353 111111112 233333332    1


Q ss_pred             CCceeEEEEeCCcc------------chHHHHHHHHhccCcCeEEEEecc
Q 029764           95 EGSFDYAFVDADKD------------NYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        95 ~~~~D~i~id~~~~------------~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      ...+|+||-.....            .....++.+++.|++||.+++-..
T Consensus       252 g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~  301 (398)
T 1kol_A          252 EPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL  301 (398)
T ss_dssp             SSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEecc
Confidence            24799998543221            122467888999999999987543

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=97.02  E-value=0.027  Score=38.97  Aligned_cols=112  Identities=12%  Similarity=0.126  Sum_probs=72.9

Q ss_pred             HHHHHHHHcCC--CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029764           11 LMAMLLRLVNA--KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   88 (188)
Q Consensus        11 ~l~~l~~~~~~--~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   88 (188)
                      .|.+.+.....  .-|||+|-|.|..=-.+...+| +.+|+.+|-.-....      .  ..++.-.++.||+.+.++..
T Consensus        29 ~L~~a~~~v~~~~GpVlElGLGNGRTydHLRe~~P-~R~I~vfDR~~~~hp------~--~~P~~e~~ilGdi~~tL~~~   99 (174)
T 3iht_A           29 CLEHAIAQTAGLSGPVYELGLGNGRTYHHLRQHVQ-GREIYVFERAVASHP------D--STPPEAQLILGDIRETLPAT   99 (174)
T ss_dssp             HHHHHHHHTTTCCSCEEEECCTTCHHHHHHHHHCC-SSCEEEEESSCCCCG------G--GCCCGGGEEESCHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCceEEecCCCChhHHHHHHhCC-CCcEEEEEeeeccCC------C--CCCchHheecccHHHHHHHH
Confidence            34444443332  3699999999999888999998 899999996432211      1  12233468999999988764


Q ss_pred             hhcccCCCceeEEEEeCCccch---HHHH----HHHHhccCcCeEEEEeccc
Q 029764           89 LKYSENEGSFDYAFVDADKDNY---CNYH----ERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        89 ~~~~~~~~~~D~i~id~~~~~~---~~~~----~~~~~~L~~gG~lv~~~~~  133 (188)
                      ...  -..+.-++..|....+.   ..+.    ..+.++|.+||++|....+
T Consensus       100 ~~r--~g~~a~LaHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~~pl  149 (174)
T 3iht_A          100 LER--FGATASLVHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSSDRM  149 (174)
T ss_dssp             HHH--HCSCEEEEEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEESSCC
T ss_pred             HHh--cCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCcc
Confidence            321  04567777777432221   1222    2234799999999998777

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=97.02  E-value=0.0046  Score=48.79  Aligned_cols=98  Identities=15%  Similarity=0.073  Sum_probs=66.8

Q ss_pred             HHcCCCEEEEEc--ccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE---cchHHHHHHHhhc
Q 029764           17 RLVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE---SEALSVLDQLLKY   91 (188)
Q Consensus        17 ~~~~~~~vLeiG--~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~   91 (188)
                      ...++++||-+|  .|.|..++.+|+..  +.+|++++.+++..+.+++    .|..   ..+.   .+..+.+...   
T Consensus       160 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~----~Ga~---~~~~~~~~~~~~~~~~~---  227 (362)
T 2c0c_A          160 GLSEGKKVLVTAAAGGTGQFAMQLSKKA--KCHVIGTCSSDEKSAFLKS----LGCD---RPINYKTEPVGTVLKQE---  227 (362)
T ss_dssp             CCCTTCEEEETTTTBTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHH---
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHH----cCCc---EEEecCChhHHHHHHHh---
Confidence            456778999999  56788888888875  5699999999887776664    3432   1222   2232333332   


Q ss_pred             ccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764           92 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        92 ~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                        ....+|++|-....    ..++.+.+.|+++|.+++-..
T Consensus       228 --~~~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~g~  262 (362)
T 2c0c_A          228 --YPEGVDVVYESVGG----AMFDLAVDALATKGRLIVIGF  262 (362)
T ss_dssp             --CTTCEEEEEECSCT----HHHHHHHHHEEEEEEEEECCC
T ss_pred             --cCCCCCEEEECCCH----HHHHHHHHHHhcCCEEEEEeC
Confidence              13579999865432    467888899999999887543

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=97.01  E-value=0.0088  Score=46.89  Aligned_cols=106  Identities=11%  Similarity=0.070  Sum_probs=66.5

Q ss_pred             HHHcCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE-cchHHHHHHHhhccc
Q 029764           16 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSE   93 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~   93 (188)
                      +...++.+||-+|+|. |..++.+|+..  +.+|+++|.+++..+.+++    .|...-+.... .+..+.+.+.... .
T Consensus       164 ~~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~~~~~~~~~~~~~~i~~~~~~-~  236 (352)
T 1e3j_A          164 AGVQLGTTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKN----CGADVTLVVDPAKEEESSIIERIRS-A  236 (352)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----TTCSEEEECCTTTSCHHHHHHHHHH-H
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----hCCCEEEcCcccccHHHHHHHHhcc-c
Confidence            3456778999999864 67788888875  5679999999988777654    35321111110 2222333222110 0


Q ss_pred             CCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           94 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        94 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      ....+|+||-....   ...++.+++.|+++|.++.-.
T Consensus       237 ~g~g~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~G  271 (352)
T 1e3j_A          237 IGDLPNVTIDCSGN---EKCITIGINITRTGGTLMLVG  271 (352)
T ss_dssp             SSSCCSEEEECSCC---HHHHHHHHHHSCTTCEEEECS
T ss_pred             cCCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEEEe
Confidence            02579999865432   345677889999999998754

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=96.93  E-value=0.0023  Score=49.85  Aligned_cols=103  Identities=13%  Similarity=0.094  Sum_probs=66.9

Q ss_pred             HHHcCCCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029764           16 LRLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   93 (188)
Q Consensus        16 ~~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   93 (188)
                      ....++++||-+|+  |.|..++.+++..  +.+|++++.+++..+.+.+   ..|...-+.....+..+.+.+.     
T Consensus       145 ~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~-----  214 (336)
T 4b7c_A          145 GQPKNGETVVISGAAGAVGSVAGQIARLK--GCRVVGIAGGAEKCRFLVE---ELGFDGAIDYKNEDLAAGLKRE-----  214 (336)
T ss_dssp             TCCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH---TTCCSEEEETTTSCHHHHHHHH-----
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH---HcCCCEEEECCCHHHHHHHHHh-----
Confidence            34667789999997  5677888888764  5699999999887766532   2343211111112333333332     


Q ss_pred             CCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764           94 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        94 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      ..+.+|++|-....    ..++.+.+.|+++|.+++-..
T Consensus       215 ~~~~~d~vi~~~g~----~~~~~~~~~l~~~G~iv~~G~  249 (336)
T 4b7c_A          215 CPKGIDVFFDNVGG----EILDTVLTRIAFKARIVLCGA  249 (336)
T ss_dssp             CTTCEEEEEESSCH----HHHHHHHTTEEEEEEEEECCC
T ss_pred             cCCCceEEEECCCc----chHHHHHHHHhhCCEEEEEee
Confidence            13579998865432    467888999999999987543

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=96.91  E-value=0.0068  Score=48.56  Aligned_cols=103  Identities=7%  Similarity=0.062  Sum_probs=63.5

Q ss_pred             HcCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE---cchHHHHHHHhhccc
Q 029764           18 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE---SEALSVLDQLLKYSE   93 (188)
Q Consensus        18 ~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~~   93 (188)
                      ..++.+||-+|+|. |..++.+|+... ..+|+++|.+++..+.+++.    |..   .++.   .+..+.+.++.    
T Consensus       211 ~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~i~~~t----  278 (404)
T 3ip1_A          211 IRPGDNVVILGGGPIGLAAVAILKHAG-ASKVILSEPSEVRRNLAKEL----GAD---HVIDPTKENFVEAVLDYT----  278 (404)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCHHHHHHHHHH----TCS---EEECTTTSCHHHHHHHHT----
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHc----CCC---EEEcCCCCCHHHHHHHHh----
Confidence            45667899999863 677788888753 23999999999888877653    422   2222   23333333332    


Q ss_pred             CCCceeEEEEeCCcc--chHHHHHHHHhccCcCeEEEEecc
Q 029764           94 NEGSFDYAFVDADKD--NYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        94 ~~~~~D~i~id~~~~--~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      ....+|+||-.....  .....++.+++.++++|.+++-..
T Consensus       279 ~g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          279 NGLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVAR  319 (404)
T ss_dssp             TTCCCSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred             CCCCCCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeCC
Confidence            134799998553332  222233333355599999998643

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=96.91  E-value=0.0021  Score=50.29  Aligned_cols=102  Identities=15%  Similarity=0.043  Sum_probs=65.3

Q ss_pred             HHcCCCEEEEEccc--chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           17 RLVNAKKTIEIGVF--TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        17 ~~~~~~~vLeiG~g--~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      ...++++||-+|+|  .|..++.+|+..  +.+|++++.+++..+.+++.    |...-+.....+..+.+.++.    .
T Consensus       141 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~l----ga~~~~~~~~~~~~~~~~~~~----~  210 (340)
T 3gms_A          141 NLQRNDVLLVNACGSAIGHLFAQLSQIL--NFRLIAVTRNNKHTEELLRL----GAAYVIDTSTAPLYETVMELT----N  210 (340)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHHH----TCSEEEETTTSCHHHHHHHHT----T
T ss_pred             ccCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhC----CCcEEEeCCcccHHHHHHHHh----C
Confidence            45677899999986  677788888765  57999999999988877762    432111111123333333332    1


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      ...+|++|-......    .....+.|+++|.++.-..
T Consensus       211 ~~g~Dvvid~~g~~~----~~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          211 GIGADAAIDSIGGPD----GNELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             TSCEEEEEESSCHHH----HHHHHHTEEEEEEEEECCC
T ss_pred             CCCCcEEEECCCChh----HHHHHHHhcCCCEEEEEee
Confidence            357999986543222    2334589999999998654

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.90  E-value=0.017  Score=45.68  Aligned_cols=97  Identities=18%  Similarity=0.195  Sum_probs=65.9

Q ss_pred             HHcCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764           17 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      ...++.+||-+|+|. |..++.+|+..  +.+|++++.+++..+.+++    .|..   .++.....+...++      .
T Consensus       191 ~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~------~  255 (369)
T 1uuf_A          191 QAGPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKA----LGAD---EVVNSRNADEMAAH------L  255 (369)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHH----HTCS---EEEETTCHHHHHTT------T
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCc---EEeccccHHHHHHh------h
Confidence            456778999999874 77888888875  5689999999998887765    3432   22332222333332      2


Q ss_pred             CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      ..+|+||-......   .++.+.+.|+++|.++.-.
T Consensus       256 ~g~Dvvid~~g~~~---~~~~~~~~l~~~G~iv~~G  288 (369)
T 1uuf_A          256 KSFDFILNTVAAPH---NLDDFTTLLKRDGTMTLVG  288 (369)
T ss_dssp             TCEEEEEECCSSCC---CHHHHHTTEEEEEEEEECC
T ss_pred             cCCCEEEECCCCHH---HHHHHHHHhccCCEEEEec
Confidence            57999986543321   3567789999999988754

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=96.89  E-value=0.0019  Score=50.37  Aligned_cols=97  Identities=18%  Similarity=0.158  Sum_probs=65.2

Q ss_pred             HcCCCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE---cchHHHHHHHhhcc
Q 029764           18 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE---SEALSVLDQLLKYS   92 (188)
Q Consensus        18 ~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~   92 (188)
                      ..++++||-+|+  |.|..++.+++..  +.+|++++.+++..+.+++    .|..   ..+.   .+..+.+.+..   
T Consensus       146 ~~~g~~vlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~ga~---~~~~~~~~~~~~~~~~~~---  213 (334)
T 3qwb_A          146 VKKGDYVLLFAAAGGVGLILNQLLKMK--GAHTIAVASTDEKLKIAKE----YGAE---YLINASKEDILRQVLKFT---  213 (334)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHT---
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCc---EEEeCCCchHHHHHHHHh---
Confidence            456789999993  5677888888875  6799999999887776654    3422   2222   23333333332   


Q ss_pred             cCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           93 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        93 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                       ....+|++|-....    ..++.+.+.|+++|.++.-.
T Consensus       214 -~~~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~G  247 (334)
T 3qwb_A          214 -NGKGVDASFDSVGK----DTFEISLAALKRKGVFVSFG  247 (334)
T ss_dssp             -TTSCEEEEEECCGG----GGHHHHHHHEEEEEEEEECC
T ss_pred             -CCCCceEEEECCCh----HHHHHHHHHhccCCEEEEEc
Confidence             13579998865432    35677889999999998854

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=96.89  E-value=0.011  Score=46.47  Aligned_cols=105  Identities=10%  Similarity=0.013  Sum_probs=68.5

Q ss_pred             HHHcCCCEEEEEcccc-hHHHHHHHhhCCCCCE-EEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc--chHHHHHHHhhc
Q 029764           16 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIES--EALSVLDQLLKY   91 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~   91 (188)
                      +...++.+||-+|+|. |..++.+|+..  +.+ |+++|.+++..+.+++. .    ..-+.+...  +..+....+.+.
T Consensus       175 ~~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~l-~----~~~~~~~~~~~~~~~~~~~v~~~  247 (363)
T 3m6i_A          175 AGVRLGDPVLICGAGPIGLITMLCAKAA--GACPLVITDIDEGRLKFAKEI-C----PEVVTHKVERLSAEESAKKIVES  247 (363)
T ss_dssp             HTCCTTCCEEEECCSHHHHHHHHHHHHT--TCCSEEEEESCHHHHHHHHHH-C----TTCEEEECCSCCHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHh-c----hhcccccccccchHHHHHHHHHH
Confidence            4556778999999864 77888888875  454 99999999998888865 2    122333211  122222222211


Q ss_pred             ccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           92 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        92 ~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                       .....+|+||-....   ...++.+.+.|++||.+++-.
T Consensus       248 -t~g~g~Dvvid~~g~---~~~~~~~~~~l~~~G~iv~~G  283 (363)
T 3m6i_A          248 -FGGIEPAVALECTGV---ESSIAAAIWAVKFGGKVFVIG  283 (363)
T ss_dssp             -TSSCCCSEEEECSCC---HHHHHHHHHHSCTTCEEEECC
T ss_pred             -hCCCCCCEEEECCCC---hHHHHHHHHHhcCCCEEEEEc
Confidence             123579999864322   345788889999999999854

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=96.87  E-value=0.0021  Score=49.90  Aligned_cols=102  Identities=8%  Similarity=0.008  Sum_probs=66.2

Q ss_pred             HHcCCCEEEEEc--ccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           17 RLVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        17 ~~~~~~~vLeiG--~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      ...++++||-+|  .|.|..++.+++..  +.+|++++.+++..+.+++    .|...-+.....+..+.+.+..    .
T Consensus       137 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~Ga~~~~~~~~~~~~~~~~~~~----~  206 (325)
T 3jyn_A          137 QVKPGEIILFHAAAGGVGSLACQWAKAL--GAKLIGTVSSPEKAAHAKA----LGAWETIDYSHEDVAKRVLELT----D  206 (325)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHT----T
T ss_pred             CCCCCCEEEEEcCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHHh----C
Confidence            345678999998  35677888888864  5799999999988877764    2422111111123333333332    1


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      ...+|++|-....    ..+..+.+.|+++|.+++-..
T Consensus       207 ~~g~Dvvid~~g~----~~~~~~~~~l~~~G~iv~~g~  240 (325)
T 3jyn_A          207 GKKCPVVYDGVGQ----DTWLTSLDSVAPRGLVVSFGN  240 (325)
T ss_dssp             TCCEEEEEESSCG----GGHHHHHTTEEEEEEEEECCC
T ss_pred             CCCceEEEECCCh----HHHHHHHHHhcCCCEEEEEec
Confidence            3579998865433    346778899999999988643

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=96.86  E-value=0.0021  Score=50.80  Aligned_cols=100  Identities=15%  Similarity=0.093  Sum_probs=67.5

Q ss_pred             HHcCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc---chHHHHHHHhhcc
Q 029764           17 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES---EALSVLDQLLKYS   92 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~   92 (188)
                      ...++.+||-+|+|. |..++.+|+..  +.+|++++.+++..+.+++    .|..   ..+..   +..+.+.++.   
T Consensus       186 ~~~~g~~VlV~G~G~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~v~~~~---  253 (363)
T 3uog_A          186 HLRAGDRVVVQGTGGVALFGLQIAKAT--GAEVIVTSSSREKLDRAFA----LGAD---HGINRLEEDWVERVYALT---  253 (363)
T ss_dssp             CCCTTCEEEEESSBHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHHH---
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEecCchhHHHHHH----cCCC---EEEcCCcccHHHHHHHHh---
Confidence            455678999999774 77888888875  5699999999988777655    3432   22222   3333333332   


Q ss_pred             cCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           93 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        93 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                       ....+|+||-....    ..++.+.+.|+++|.+++-...
T Consensus       254 -~g~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~G~~  289 (363)
T 3uog_A          254 -GDRGADHILEIAGG----AGLGQSLKAVAPDGRISVIGVL  289 (363)
T ss_dssp             -TTCCEEEEEEETTS----SCHHHHHHHEEEEEEEEEECCC
T ss_pred             -CCCCceEEEECCCh----HHHHHHHHHhhcCCEEEEEecC
Confidence             13489999865442    2367788999999999876543

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=96.84  E-value=0.0072  Score=47.82  Aligned_cols=99  Identities=16%  Similarity=0.308  Sum_probs=66.2

Q ss_pred             HHcCCCEEEEEcccc-hHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE-----cchHHHHHHHh
Q 029764           17 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIE-----SEALSVLDQLL   89 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~-----~d~~~~~~~~~   89 (188)
                      ...++.+||-+|+|. |..++.+|+..  +. +|+++|.+++..+.+++    .|..   .++.     .+..+.+.+..
T Consensus       189 ~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~~~~  259 (374)
T 1cdo_A          189 KVEPGSTCAVFGLGAVGLAAVMGCHSA--GAKRIIAVDLNPDKFEKAKV----FGAT---DFVNPNDHSEPISQVLSKMT  259 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHH----TTCC---EEECGGGCSSCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHH----hCCc---eEEeccccchhHHHHHHHHh
Confidence            345677999999864 67788888875  45 89999999998887764    3432   1222     12333333321


Q ss_pred             hcccCCCceeEEEEeCCccchHHHHHHHHhccCcC-eEEEEecc
Q 029764           90 KYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNT  132 (188)
Q Consensus        90 ~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  132 (188)
                           .+.+|+||-....   ...++.+++.|+++ |.++.-..
T Consensus       260 -----~~g~D~vid~~g~---~~~~~~~~~~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          260 -----NGGVDFSLECVGN---VGVMRNALESCLKGWGVSVLVGW  295 (374)
T ss_dssp             -----TSCBSEEEECSCC---HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             -----CCCCCEEEECCCC---HHHHHHHHHHhhcCCcEEEEEcC
Confidence                 2479999854322   34578888999999 99887543

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=96.82  E-value=0.053  Score=41.95  Aligned_cols=111  Identities=8%  Similarity=0.006  Sum_probs=72.6

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCC--CCcEEEEEcchHH-HHHHHhhcccCCC
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV--DHKINFIESEALS-VLDQLLKYSENEG   96 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~-~~~~~~~~~~~~~   96 (188)
                      .+..|+++|||.=.....+.  .+.+.+++-+| .|+.+...++.+...+.  ..+..++..|..+ ....+...+.+..
T Consensus       102 g~~QvV~LGaGlDTra~Rl~--~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~  178 (310)
T 2uyo_A          102 GIRQFVILASGLDSRAYRLD--WPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPS  178 (310)
T ss_dssp             TCCEEEEETCTTCCHHHHSC--CCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTT
T ss_pred             CCCeEEEeCCCCCchhhhcc--CCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCC
Confidence            45689999997666544443  23357899999 59999999998876542  3567888888765 3333322211122


Q ss_pred             ceeEEEEeC-----CccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           97 SFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        97 ~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      ..=++++.+     .......+++.+...+.+|+.++++...
T Consensus       179 ~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~  220 (310)
T 2uyo_A          179 ARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSP  220 (310)
T ss_dssp             SCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred             CCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence            233444433     2344567888888888999999998654

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=96.82  E-value=0.0039  Score=48.81  Aligned_cols=98  Identities=11%  Similarity=0.116  Sum_probs=65.7

Q ss_pred             HHcCCCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE--cchHHHHHHHhhcc
Q 029764           17 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYS   92 (188)
Q Consensus        17 ~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~   92 (188)
                      ...++++||-+|+  |.|..++.+|+..  +.+|++++.+++..+.+++.    |..   .++.  .+..+.+.+..   
T Consensus       156 ~~~~g~~VlV~Gasg~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~~----ga~---~v~~~~~~~~~~v~~~~---  223 (342)
T 4eye_A          156 QLRAGETVLVLGAAGGIGTAAIQIAKGM--GAKVIAVVNRTAATEFVKSV----GAD---IVLPLEEGWAKAVREAT---  223 (342)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHH----TCS---EEEESSTTHHHHHHHHT---
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhc----CCc---EEecCchhHHHHHHHHh---
Confidence            3456789999996  5678888888875  56999999999988777753    432   1222  23333333331   


Q ss_pred             cCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           93 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        93 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                       ....+|++|-.....    .++.+.+.|+++|.+++-.
T Consensus       224 -~~~g~Dvvid~~g~~----~~~~~~~~l~~~G~iv~~G  257 (342)
T 4eye_A          224 -GGAGVDMVVDPIGGP----AFDDAVRTLASEGRLLVVG  257 (342)
T ss_dssp             -TTSCEEEEEESCC------CHHHHHHTEEEEEEEEEC-
T ss_pred             -CCCCceEEEECCchh----HHHHHHHhhcCCCEEEEEE
Confidence             124799998654332    4677889999999998754

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=96.81  E-value=0.0054  Score=48.52  Aligned_cols=99  Identities=14%  Similarity=0.266  Sum_probs=65.9

Q ss_pred             HHcCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE-----cchHHHHHHHhh
Q 029764           17 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-----SEALSVLDQLLK   90 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~-----~d~~~~~~~~~~   90 (188)
                      ...++.+||-+|+|. |..++.+|+... ..+|+++|.+++..+.+++    +|..   .++.     .+..+.+.+.. 
T Consensus       188 ~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~i~~~t-  258 (373)
T 1p0f_A          188 KVTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKDKFPKAIE----LGAT---ECLNPKDYDKPIYEVICEKT-  258 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHHHHT-
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCc---EEEecccccchHHHHHHHHh-
Confidence            455678999999864 677888888753 2389999999998887764    3532   2222     12333333331 


Q ss_pred             cccCCCceeEEEEeCCccchHHHHHHHHhccCcC-eEEEEec
Q 029764           91 YSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDN  131 (188)
Q Consensus        91 ~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~  131 (188)
                          .+.+|+||-....   ...++.+++.|+++ |.++.-.
T Consensus       259 ----~gg~Dvvid~~g~---~~~~~~~~~~l~~~~G~iv~~G  293 (373)
T 1p0f_A          259 ----NGGVDYAVECAGR---IETMMNALQSTYCGSGVTVVLG  293 (373)
T ss_dssp             ----TSCBSEEEECSCC---HHHHHHHHHTBCTTTCEEEECC
T ss_pred             ----CCCCCEEEECCCC---HHHHHHHHHHHhcCCCEEEEEc
Confidence                2489999854322   34578888999999 9988754

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=96.80  E-value=0.0073  Score=47.81  Aligned_cols=99  Identities=18%  Similarity=0.289  Sum_probs=66.0

Q ss_pred             HHcCCCEEEEEcccc-hHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE-----cchHHHHHHHh
Q 029764           17 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIE-----SEALSVLDQLL   89 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~-----~d~~~~~~~~~   89 (188)
                      ...++.+||-+|+|. |..++.+|+..  +. +|+++|.+++..+.+++    .|..   ..+.     .+..+.+.+..
T Consensus       192 ~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~v~~~~  262 (376)
T 1e3i_A          192 KVTPGSTCAVFGLGCVGLSAIIGCKIA--GASRIIAIDINGEKFPKAKA----LGAT---DCLNPRELDKPVQDVITELT  262 (376)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHH----hCCc---EEEccccccchHHHHHHHHh
Confidence            345677999999863 67788888875  44 89999999998877754    3432   1222     12333333331


Q ss_pred             hcccCCCceeEEEEeCCccchHHHHHHHHhccCcC-eEEEEecc
Q 029764           90 KYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNT  132 (188)
Q Consensus        90 ~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  132 (188)
                           .+.+|+||-....   ...++.+.+.|+++ |.+++-..
T Consensus       263 -----~~g~Dvvid~~G~---~~~~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          263 -----AGGVDYSLDCAGT---AQTLKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             -----TSCBSEEEESSCC---HHHHHHHHHTBCTTTCEEEECCC
T ss_pred             -----CCCccEEEECCCC---HHHHHHHHHHhhcCCCEEEEECC
Confidence                 2479999854322   34678888999999 99987543

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=96.79  E-value=0.0038  Score=48.53  Aligned_cols=100  Identities=11%  Similarity=0.087  Sum_probs=64.1

Q ss_pred             HHcCCCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE-cchHHHHHHHhhccc
Q 029764           17 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSE   93 (188)
Q Consensus        17 ~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~   93 (188)
                      ...++++||-+|+  |.|..+..+++..  +.+|+++|.+++..+.+++    .+....+.... .+..+.+....    
T Consensus       142 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~--G~~V~~~~~~~~~~~~~~~----~g~~~~~d~~~~~~~~~~~~~~~----  211 (333)
T 1v3u_A          142 GVKGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQ----IGFDAAFNYKTVNSLEEALKKAS----  211 (333)
T ss_dssp             CCCSSCEEEEESTTBHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSEEEETTSCSCHHHHHHHHC----
T ss_pred             CCCCCCEEEEecCCCcHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHh----cCCcEEEecCCHHHHHHHHHHHh----
Confidence            3456789999997  5677777777764  5799999998887766633    24221111111 22333333321    


Q ss_pred             CCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           94 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        94 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                       .+.+|+++-....    ..++.+.+.|+++|.+++-.
T Consensus       212 -~~~~d~vi~~~g~----~~~~~~~~~l~~~G~~v~~g  244 (333)
T 1v3u_A          212 -PDGYDCYFDNVGG----EFLNTVLSQMKDFGKIAICG  244 (333)
T ss_dssp             -TTCEEEEEESSCH----HHHHHHHTTEEEEEEEEECC
T ss_pred             -CCCCeEEEECCCh----HHHHHHHHHHhcCCEEEEEe
Confidence             2579999866432    34788889999999998754

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=96.78  E-value=0.00058  Score=66.17  Aligned_cols=102  Identities=15%  Similarity=0.084  Sum_probs=53.8

Q ss_pred             CCEEEEEcccchHHHHHHHhhCCC----CCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           21 AKKTIEIGVFTGYSLLLTALTIPE----DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~~~----~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      ..+|||||.|+|..+..+...+..    ...++..|+++...+.+++.++...    ++.-.-|..+. ..+     ...
T Consensus      1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~d----i~~~~~d~~~~-~~~-----~~~ 1310 (2512)
T 2vz8_A         1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLH----VTQGQWDPANP-APG-----SLG 1310 (2512)
T ss_dssp             EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHT----EEEECCCSSCC-CC---------
T ss_pred             CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcc----ccccccccccc-ccC-----CCC
Confidence            458999999999877776665542    2378889999999988888876532    22211111100 000     135


Q ss_pred             ceeEEEEeCC---ccchHHHHHHHHhccCcCeEEEEecc
Q 029764           97 SFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        97 ~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      +||+|+....   ..+....+.++.++|+|||.+++...
T Consensus      1311 ~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A         1311 KADLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp             -CCEEEEECC--------------------CCEEEEEEC
T ss_pred             ceeEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEec
Confidence            7999997642   23456678899999999999988654

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=96.77  E-value=0.0034  Score=48.89  Aligned_cols=100  Identities=13%  Similarity=0.159  Sum_probs=64.5

Q ss_pred             HcCCCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764           18 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        18 ~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      ..++++||-+|+  |.|..++.+++..  +.+|++++.+++..+.+++    .+....+.....+..+.+.+..    ..
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~--G~~Vi~~~~~~~~~~~~~~----~g~~~~~d~~~~~~~~~i~~~~----~~  212 (333)
T 1wly_A          143 VKPGDYVLIHAAAGGMGHIMVPWARHL--GATVIGTVSTEEKAETARK----LGCHHTINYSTQDFAEVVREIT----GG  212 (333)
T ss_dssp             CCTTCEEEETTTTSTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHH----TT
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCCEEEECCCHHHHHHHHHHh----CC
Confidence            456789999994  6778888888764  5799999999887777654    2422111111122223333322    12


Q ss_pred             CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      ..+|++|-....    ..++.+.+.|+++|.++.-.
T Consensus       213 ~~~d~vi~~~g~----~~~~~~~~~l~~~G~iv~~g  244 (333)
T 1wly_A          213 KGVDVVYDSIGK----DTLQKSLDCLRPRGMCAAYG  244 (333)
T ss_dssp             CCEEEEEECSCT----TTHHHHHHTEEEEEEEEECC
T ss_pred             CCCeEEEECCcH----HHHHHHHHhhccCCEEEEEe
Confidence            479999865433    34678889999999988754

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=96.72  E-value=0.0053  Score=48.26  Aligned_cols=76  Identities=14%  Similarity=0.065  Sum_probs=54.2

Q ss_pred             CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029764           21 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  100 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~  100 (188)
                      +.+++|+.||.|..++.+...--.-..++++|+++.+++..+.|+.      ...++.+|..++......    ...+|+
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~------~~~~~~~Di~~~~~~~~~----~~~~D~   71 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP------HTQLLAKTIEGITLEEFD----RLSFDM   71 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT------TSCEECSCGGGCCHHHHH----HHCCSE
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc------ccccccCCHHHccHhHcC----cCCcCE
Confidence            4589999999999999988752101369999999999999998863      234678888765322110    126899


Q ss_pred             EEEeCC
Q 029764          101 AFVDAD  106 (188)
Q Consensus       101 i~id~~  106 (188)
                      ++.+.+
T Consensus        72 l~~gpP   77 (343)
T 1g55_A           72 ILMSPP   77 (343)
T ss_dssp             EEECCC
T ss_pred             EEEcCC
Confidence            998743

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=96.72  E-value=0.0086  Score=47.37  Aligned_cols=99  Identities=14%  Similarity=0.313  Sum_probs=65.8

Q ss_pred             HHcCCCEEEEEcccc-hHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE-----cchHHHHHHHh
Q 029764           17 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIE-----SEALSVLDQLL   89 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~-----~d~~~~~~~~~   89 (188)
                      ...++.+||-+|+|. |..++.+|+..  +. +|+++|.+++..+.+++    .|..   .++.     .+..+.+.+..
T Consensus       188 ~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~~~~  258 (374)
T 2jhf_A          188 KVTQGSTCAVFGLGGVGLSVIMGCKAA--GAARIIGVDINKDKFAKAKE----VGAT---ECVNPQDYKKPIQEVLTEMS  258 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHH----hCCc---eEecccccchhHHHHHHHHh
Confidence            345678999999864 67788888875  44 89999999998887754    3432   1222     12333333331


Q ss_pred             hcccCCCceeEEEEeCCccchHHHHHHHHhccCcC-eEEEEecc
Q 029764           90 KYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNT  132 (188)
Q Consensus        90 ~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  132 (188)
                           .+.+|+||-....   ...++.+.+.|+++ |.++.-..
T Consensus       259 -----~~g~D~vid~~g~---~~~~~~~~~~l~~~~G~iv~~G~  294 (374)
T 2jhf_A          259 -----NGGVDFSFEVIGR---LDTMVTALSCCQEAYGVSVIVGV  294 (374)
T ss_dssp             -----TSCBSEEEECSCC---HHHHHHHHHHBCTTTCEEEECSC
T ss_pred             -----CCCCcEEEECCCC---HHHHHHHHHHhhcCCcEEEEecc
Confidence                 2479999854322   34577888999999 99887543

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.69  E-value=0.0026  Score=49.39  Aligned_cols=97  Identities=12%  Similarity=0.086  Sum_probs=63.6

Q ss_pred             HcCCCEEEEEc--ccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE---cchHHHHHHHhhcc
Q 029764           18 LVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE---SEALSVLDQLLKYS   92 (188)
Q Consensus        18 ~~~~~~vLeiG--~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~   92 (188)
                      ..++++||-+|  +|.|..++.+++..  +.+|++++.+++..+.+++    .+..   ..+.   .+..+.+.+..   
T Consensus       138 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~--G~~V~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~---  205 (327)
T 1qor_A          138 IKPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGTAQKAQSALK----AGAW---QVINYREEDLVERLKEIT---  205 (327)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHHT---
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCC---EEEECCCccHHHHHHHHh---
Confidence            45678999999  45677777777764  5699999999888777765    2422   1222   22222222221   


Q ss_pred             cCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           93 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        93 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                       ....+|++|-...    ...++.+.+.|+++|.++.-.
T Consensus       206 -~~~~~D~vi~~~g----~~~~~~~~~~l~~~G~iv~~g  239 (327)
T 1qor_A          206 -GGKKVRVVYDSVG----RDTWERSLDCLQRRGLMVSFG  239 (327)
T ss_dssp             -TTCCEEEEEECSC----GGGHHHHHHTEEEEEEEEECC
T ss_pred             -CCCCceEEEECCc----hHHHHHHHHHhcCCCEEEEEe
Confidence             1247999987654    235678889999999988754

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=96.68  E-value=0.0081  Score=47.82  Aligned_cols=77  Identities=9%  Similarity=-0.008  Sum_probs=53.8

Q ss_pred             CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHH-HhhcccCCCceeE
Q 029764           22 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ-LLKYSENEGSFDY  100 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~~~~~~D~  100 (188)
                      .+++|+.||+|..++-+..+-  -..+.++|+++.+.+..+.|+.      ...++.+|..++... +.........+|+
T Consensus         3 ~~vidLFsG~GGlslG~~~aG--~~~v~avE~d~~a~~t~~~N~~------~~~~~~~DI~~~~~~~~~~~~~~~~~~D~   74 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAG--FDVKMAVEIDQHAINTHAINFP------RSLHVQEDVSLLNAEIIKGFFKNDMPIDG   74 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHT--CEEEEEECSCHHHHHHHHHHCT------TSEEECCCGGGCCHHHHHHHHCSCCCCCE
T ss_pred             CeEEEEccCcCHHHHHHHHCC--CcEEEEEeCCHHHHHHHHHhCC------CCceEecChhhcCHHHHHhhcccCCCeeE
Confidence            479999999999999987762  2357799999999888887752      356778887664221 2110001368999


Q ss_pred             EEEeCC
Q 029764          101 AFVDAD  106 (188)
Q Consensus       101 i~id~~  106 (188)
                      |+.+.+
T Consensus        75 i~ggpP   80 (376)
T 3g7u_A           75 IIGGPP   80 (376)
T ss_dssp             EEECCC
T ss_pred             EEecCC
Confidence            998754

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=96.68  E-value=0.0081  Score=47.46  Aligned_cols=99  Identities=17%  Similarity=0.331  Sum_probs=65.9

Q ss_pred             HHcCCCEEEEEcccc-hHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE-----cchHHHHHHHh
Q 029764           17 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIE-----SEALSVLDQLL   89 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~-----~d~~~~~~~~~   89 (188)
                      ...++.+||-+|+|. |..++.+|+..  +. +|+++|.+++..+.+++.    |..   .++.     .+..+.+.+..
T Consensus       187 ~~~~g~~VlV~GaG~vG~~avqla~~~--Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~~~v~~~~  257 (373)
T 2fzw_A          187 KLEPGSVCAVFGLGGVGLAVIMGCKVA--GASRIIGVDINKDKFARAKEF----GAT---ECINPQDFSKPIQEVLIEMT  257 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHH--TCSEEEEECSCGGGHHHHHHH----TCS---EEECGGGCSSCHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHc----CCc---eEeccccccccHHHHHHHHh
Confidence            345677999999864 67778888875  44 899999999988877642    432   1222     12333333331


Q ss_pred             hcccCCCceeEEEEeCCccchHHHHHHHHhccCcC-eEEEEecc
Q 029764           90 KYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNT  132 (188)
Q Consensus        90 ~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  132 (188)
                           .+.+|+||-....   ...++.+++.|+++ |.++.-..
T Consensus       258 -----~~g~D~vid~~g~---~~~~~~~~~~l~~~~G~iv~~G~  293 (373)
T 2fzw_A          258 -----DGGVDYSFECIGN---VKVMRAALEACHKGWGVSVVVGV  293 (373)
T ss_dssp             -----TSCBSEEEECSCC---HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             -----CCCCCEEEECCCc---HHHHHHHHHhhccCCcEEEEEec
Confidence                 2479999854322   34578888999999 99987543

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=96.67  E-value=0.047  Score=42.71  Aligned_cols=116  Identities=11%  Similarity=0.165  Sum_probs=75.3

Q ss_pred             HHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcC--------------------CCCcE
Q 029764           15 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--------------------VDHKI   74 (188)
Q Consensus        15 l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--------------------~~~~~   74 (188)
                      ++...+...|+.+|||.......+....+ +.+++=||. |+.++.-++.+...+                    .+++.
T Consensus        92 fl~~~~~~qVV~LGaGlDTr~~RL~~~~~-~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  169 (334)
T 1rjd_A           92 FLVANEKVQVVNLGCGSDLRMLPLLQMFP-HLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRY  169 (334)
T ss_dssp             HHHHCSSEEEEEETCTTCCTHHHHHHHCT-TEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSE
T ss_pred             HHHHCCCcEEEEeCCCCccHHHHhcCcCC-CCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCce
Confidence            34445667999999999999888887544 667777777 888877777776642                    13578


Q ss_pred             EEEEcchHHH--HHHHhhcccCCCceeEEEEeC-----CccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           75 NFIESEALSV--LDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        75 ~~~~~d~~~~--~~~~~~~~~~~~~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      .++..|..+.  +..+.+...+.....+++..+     ..+....+++.+.... ++|.+++-+..
T Consensus       170 ~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i  234 (334)
T 1rjd_A          170 KLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPI  234 (334)
T ss_dssp             EEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEEC
T ss_pred             EEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEecc
Confidence            8898888653  333222211223456666654     3455667788887776 66666544443

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=96.66  E-value=0.014  Score=45.55  Aligned_cols=102  Identities=15%  Similarity=0.087  Sum_probs=65.6

Q ss_pred             HHcCCCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEE-EcchHHHHHHHhhccc
Q 029764           17 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI-ESEALSVLDQLLKYSE   93 (188)
Q Consensus        17 ~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~   93 (188)
                      ...++++||-+|+  |.|..++.+++..  +.+|++++.+++..+.+++    .+....+.+. ..+..+.+.+..    
T Consensus       166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~--Ga~V~~~~~~~~~~~~~~~----~g~~~~~d~~~~~~~~~~~~~~~----  235 (347)
T 2hcy_A          166 NLMAGHWVAISGAAGGLGSLAVQYAKAM--GYRVLGIDGGEGKEELFRS----IGGEVFIDFTKEKDIVGAVLKAT----  235 (347)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECSTTHHHHHHH----TTCCEEEETTTCSCHHHHHHHHH----
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHC--CCcEEEEcCCHHHHHHHHH----cCCceEEecCccHhHHHHHHHHh----
Confidence            3456789999998  5677777887764  5699999998887766554    3432111111 122333333321    


Q ss_pred             CCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764           94 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        94 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                       .+.+|+++-....   ...++.+.+.|+++|.++.-..
T Consensus       236 -~~~~D~vi~~~g~---~~~~~~~~~~l~~~G~iv~~g~  270 (347)
T 2hcy_A          236 -DGGAHGVINVSVS---EAAIEASTRYVRANGTTVLVGM  270 (347)
T ss_dssp             -TSCEEEEEECSSC---HHHHHHHTTSEEEEEEEEECCC
T ss_pred             -CCCCCEEEECCCc---HHHHHHHHHHHhcCCEEEEEeC
Confidence             2379999875432   3467888899999999987543

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=96.64  E-value=0.0054  Score=48.63  Aligned_cols=104  Identities=20%  Similarity=0.283  Sum_probs=67.3

Q ss_pred             HHcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEE--EcchHHHHHHHhhccc
Q 029764           17 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI--ESEALSVLDQLLKYSE   93 (188)
Q Consensus        17 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~~~   93 (188)
                      ...++.+||-+|+| .|..++.+|+... ..+|+++|.+++.++.+++    +|...-+...  ..+..+.+.++.    
T Consensus       190 ~~~~g~~VlV~GaG~vG~~a~q~a~~~G-a~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~i~~~~----  260 (378)
T 3uko_A          190 KVEPGSNVAIFGLGTVGLAVAEGAKTAG-ASRIIGIDIDSKKYETAKK----FGVNEFVNPKDHDKPIQEVIVDLT----  260 (378)
T ss_dssp             CCCTTCCEEEECCSHHHHHHHHHHHHHT-CSCEEEECSCTTHHHHHHT----TTCCEEECGGGCSSCHHHHHHHHT----
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCcEEEccccCchhHHHHHHHhc----
Confidence            34567799999986 3778888888753 2389999999998876653    4532111111  122333333331    


Q ss_pred             CCCceeEEEEeCCccchHHHHHHHHhccCcC-eEEEEeccc
Q 029764           94 NEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNTL  133 (188)
Q Consensus        94 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~~  133 (188)
                       .+.+|+||-....   ...++.+.+.|++| |.+++-...
T Consensus       261 -~gg~D~vid~~g~---~~~~~~~~~~l~~g~G~iv~~G~~  297 (378)
T 3uko_A          261 -DGGVDYSFECIGN---VSVMRAALECCHKGWGTSVIVGVA  297 (378)
T ss_dssp             -TSCBSEEEECSCC---HHHHHHHHHTBCTTTCEEEECSCC
T ss_pred             -CCCCCEEEECCCC---HHHHHHHHHHhhccCCEEEEEccc
Confidence             3489999864332   35678889999997 999886543

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=96.62  E-value=0.031  Score=43.57  Aligned_cols=100  Identities=16%  Similarity=0.121  Sum_probs=65.8

Q ss_pred             HHcCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch-HHHHHHHhhcccC
Q 029764           17 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA-LSVLDQLLKYSEN   94 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~~   94 (188)
                      .. ++.+||-+|+|. |..++.+|+..-++.+|++++.+++..+.+++    .|..   .++.... .+....+.    .
T Consensus       168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~----~  235 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE----LGAD---YVSEMKDAESLINKLT----D  235 (344)
T ss_dssp             TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH----HTCS---EEECHHHHHHHHHHHH----T
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH----hCCC---EEeccccchHHHHHhh----c
Confidence            45 778999999863 67778888875115689999999988877765    3422   2222211 22333332    1


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      ...+|+||-....   ...++.+.+.|+++|.++.-.
T Consensus       236 g~g~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~g  269 (344)
T 2h6e_A          236 GLGASIAIDLVGT---EETTYNLGKLLAQEGAIILVG  269 (344)
T ss_dssp             TCCEEEEEESSCC---HHHHHHHHHHEEEEEEEEECC
T ss_pred             CCCccEEEECCCC---hHHHHHHHHHhhcCCEEEEeC
Confidence            2479999865432   345788889999999988754

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=96.57  E-value=0.015  Score=45.39  Aligned_cols=97  Identities=18%  Similarity=0.190  Sum_probs=65.2

Q ss_pred             HHcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE---cchHHHHHHHhhcc
Q 029764           17 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE---SEALSVLDQLLKYS   92 (188)
Q Consensus        17 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~   92 (188)
                      ...++.+||-+|+| .|..++.+|+..  +.+|++++.+++..+.+++    .|..   ..+.   .+..+.+.+.    
T Consensus       161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~---~~~d~~~~~~~~~~~~~----  227 (339)
T 1rjw_A          161 GAKPGEWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKE----LGAD---LVVNPLKEDAAKFMKEK----  227 (339)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTCS---EEECTTTSCHHHHHHHH----
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----CCCC---EEecCCCccHHHHHHHH----
Confidence            45677899999985 477788888875  5699999999888777654    3432   1222   2222222222    


Q ss_pred             cCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           93 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        93 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                        .+.+|++|-....   ...++.+.+.|+++|.++.-.
T Consensus       228 --~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g  261 (339)
T 1rjw_A          228 --VGGVHAAVVTAVS---KPAFQSAYNSIRRGGACVLVG  261 (339)
T ss_dssp             --HSSEEEEEESSCC---HHHHHHHHHHEEEEEEEEECC
T ss_pred             --hCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEec
Confidence              1479999865432   345778889999999988754

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=96.56  E-value=0.0055  Score=48.16  Aligned_cols=101  Identities=16%  Similarity=0.119  Sum_probs=65.9

Q ss_pred             HHcCCCEEEEEc--ccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           17 RLVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        17 ~~~~~~~vLeiG--~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      ...++++||-+|  .|.|..++.+|+..  +.+|++++.+++..+.+++    .|...-+.....+..+.+.+..     
T Consensus       164 ~~~~g~~VlV~Gg~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~~~~~~~~~~~~~~~~~~-----  232 (353)
T 4dup_A          164 GLTEGESVLIHGGTSGIGTTAIQLARAF--GAEVYATAGSTGKCEACER----LGAKRGINYRSEDFAAVIKAET-----  232 (353)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHH-----
T ss_pred             CCCCCCEEEEEcCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCCEEEeCCchHHHHHHHHHh-----
Confidence            355678999995  45677888888875  6799999999988877765    2432111111123333333332     


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      ...+|++|-.....    .++.+.+.|+++|.++.-..
T Consensus       233 ~~g~Dvvid~~g~~----~~~~~~~~l~~~G~iv~~g~  266 (353)
T 4dup_A          233 GQGVDIILDMIGAA----YFERNIASLAKDGCLSIIAF  266 (353)
T ss_dssp             SSCEEEEEESCCGG----GHHHHHHTEEEEEEEEECCC
T ss_pred             CCCceEEEECCCHH----HHHHHHHHhccCCEEEEEEe
Confidence            36899988654332    46778899999999887543

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.48  E-value=0.024  Score=44.28  Aligned_cols=93  Identities=16%  Similarity=0.210  Sum_probs=65.0

Q ss_pred             HHcCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764           17 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      ...++.+||-+|+|. |..++.+|+..  +.+|++++.+++..+.+++    .|..   .++ .+..    .+      .
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~---~v~-~~~~----~~------~  232 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAM--GAEVSVFARNEHKKQDALS----MGVK---HFY-TDPK----QC------K  232 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHT--TCEEEEECSSSTTHHHHHH----TTCS---EEE-SSGG----GC------C
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHh----cCCC---eec-CCHH----HH------h
Confidence            456778999999875 77888888875  5699999999998887764    4532   222 3321    11      2


Q ss_pred             CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764           96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      ..+|+||-.....   ..++.+.+.|+++|.+++-..
T Consensus       233 ~~~D~vid~~g~~---~~~~~~~~~l~~~G~iv~~G~  266 (348)
T 3two_A          233 EELDFIISTIPTH---YDLKDYLKLLTYNGDLALVGL  266 (348)
T ss_dssp             SCEEEEEECCCSC---CCHHHHHTTEEEEEEEEECCC
T ss_pred             cCCCEEEECCCcH---HHHHHHHHHHhcCCEEEEECC
Confidence            3899998543332   136778899999999998543

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=96.44  E-value=0.0041  Score=48.64  Aligned_cols=97  Identities=11%  Similarity=0.116  Sum_probs=65.0

Q ss_pred             HcCCCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE---cchHHHHHHHhhcc
Q 029764           18 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE---SEALSVLDQLLKYS   92 (188)
Q Consensus        18 ~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~   92 (188)
                      ..++++||-+|+  |.|..++.+++..  +.+|++++.+++..+.+++    .+..   ..+.   .+..+.+.+..   
T Consensus       164 ~~~g~~vlV~Gasg~iG~~~~~~a~~~--G~~Vi~~~~~~~~~~~~~~----~ga~---~~~d~~~~~~~~~~~~~~---  231 (343)
T 2eih_A          164 VRPGDDVLVMAAGSGVSVAAIQIAKLF--GARVIATAGSEDKLRRAKA----LGAD---ETVNYTHPDWPKEVRRLT---  231 (343)
T ss_dssp             CCTTCEEEECSTTSTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCS---EEEETTSTTHHHHHHHHT---
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHh----cCCC---EEEcCCcccHHHHHHHHh---
Confidence            456679999998  6788888888875  5699999999888877764    2422   1222   12222333321   


Q ss_pred             cCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           93 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        93 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                       ....+|++|-....    ..++.+.+.|+++|.++.-.
T Consensus       232 -~~~~~d~vi~~~g~----~~~~~~~~~l~~~G~~v~~g  265 (343)
T 2eih_A          232 -GGKGADKVVDHTGA----LYFEGVIKATANGGRIAIAG  265 (343)
T ss_dssp             -TTTCEEEEEESSCS----SSHHHHHHHEEEEEEEEESS
T ss_pred             -CCCCceEEEECCCH----HHHHHHHHhhccCCEEEEEe
Confidence             12479999876542    24677889999999988754

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=96.40  E-value=0.011  Score=46.76  Aligned_cols=95  Identities=17%  Similarity=0.124  Sum_probs=63.7

Q ss_pred             CCCEEEEEc-c-cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE--cchHHHHHHHhhcccCC
Q 029764           20 NAKKTIEIG-V-FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSENE   95 (188)
Q Consensus        20 ~~~~vLeiG-~-g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~~~   95 (188)
                      ++.+||-+| + +.|..++.+|+.+. +.+|++++.+++..+.+++    .|..   .++.  .+..+.+.++     ..
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~-g~~Vi~~~~~~~~~~~~~~----lGad---~vi~~~~~~~~~v~~~-----~~  237 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRT-DLTVIATASRPETQEWVKS----LGAH---HVIDHSKPLAAEVAAL-----GL  237 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHC-CSEEEEECSSHHHHHHHHH----TTCS---EEECTTSCHHHHHHTT-----CS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHHHH----cCCC---EEEeCCCCHHHHHHHh-----cC
Confidence            456899998 3 46788888998644 6799999999988777654    4532   1222  2222222222     24


Q ss_pred             CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      +.+|+||-...   ....++.+++.|+++|.+++-
T Consensus       238 ~g~Dvvid~~g---~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          238 GAPAFVFSTTH---TDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             CCEEEEEECSC---HHHHHHHHHHHSCTTCEEEEC
T ss_pred             CCceEEEECCC---chhhHHHHHHHhcCCCEEEEE
Confidence            58998875432   234678888999999999875

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=96.40  E-value=0.011  Score=46.30  Aligned_cols=96  Identities=11%  Similarity=0.083  Sum_probs=63.6

Q ss_pred             CCCEEEEEccc-chHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE---cchHHHHHHHhhcccC
Q 029764           20 NAKKTIEIGVF-TGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIE---SEALSVLDQLLKYSEN   94 (188)
Q Consensus        20 ~~~~vLeiG~g-~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~~~   94 (188)
                      ++.+||-+|+| .|..++.+|+..  +. +|++++.+++..+.+++    .|..   .++.   .+..+.+.++.    .
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~--Ga~~Vi~~~~~~~~~~~~~~----~Ga~---~~~~~~~~~~~~~v~~~~----~  233 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKAS--GAYPVIVSEPSDFRRELAKK----VGAD---YVINPFEEDVVKEVMDIT----D  233 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHT--TCCSEEEECSCHHHHHHHHH----HTCS---EEECTTTSCHHHHHHHHT----T
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----hCCC---EEECCCCcCHHHHHHHHc----C
Confidence            67789999985 367778888875  45 89999999888777664    2432   1222   23333333321    1


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      ...+|+||-....   ...++.+.+.|+++|.++.-.
T Consensus       234 g~g~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~g  267 (348)
T 2d8a_A          234 GNGVDVFLEFSGA---PKALEQGLQAVTPAGRVSLLG  267 (348)
T ss_dssp             TSCEEEEEECSCC---HHHHHHHHHHEEEEEEEEECC
T ss_pred             CCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEEEc
Confidence            2479999865432   345778889999999988754

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=96.39  E-value=0.0058  Score=47.71  Aligned_cols=101  Identities=13%  Similarity=0.131  Sum_probs=65.4

Q ss_pred             HHcCCCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE-cchHHHHHHHhhccc
Q 029764           17 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSE   93 (188)
Q Consensus        17 ~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~   93 (188)
                      ...++++||-+|+  |.|..++.+++..  +.+|++++.+++..+.+++   ..|....+.... .+..+.+....    
T Consensus       152 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~--G~~V~~~~~~~~~~~~~~~---~~g~~~~~d~~~~~~~~~~~~~~~----  222 (345)
T 2j3h_A          152 SPKEGETVYVSAASGAVGQLVGQLAKMM--GCYVVGSAGSKEKVDLLKT---KFGFDDAFNYKEESDLTAALKRCF----  222 (345)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH---TSCCSEEEETTSCSCSHHHHHHHC----
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH---HcCCceEEecCCHHHHHHHHHHHh----
Confidence            3456789999996  5777888888764  5799999999887766653   234321111111 12333333331    


Q ss_pred             CCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           94 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        94 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                       .+.+|++|-....    ..++.+.+.|+++|.+++-.
T Consensus       223 -~~~~d~vi~~~g~----~~~~~~~~~l~~~G~~v~~G  255 (345)
T 2j3h_A          223 -PNGIDIYFENVGG----KMLDAVLVNMNMHGRIAVCG  255 (345)
T ss_dssp             -TTCEEEEEESSCH----HHHHHHHTTEEEEEEEEECC
T ss_pred             -CCCCcEEEECCCH----HHHHHHHHHHhcCCEEEEEc
Confidence             2579999865432    36788889999999998754

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=96.37  E-value=0.015  Score=45.44  Aligned_cols=100  Identities=20%  Similarity=0.192  Sum_probs=64.9

Q ss_pred             HHcCCCEEEEEccc--chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE---cchHHHHHHHhhc
Q 029764           17 RLVNAKKTIEIGVF--TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE---SEALSVLDQLLKY   91 (188)
Q Consensus        17 ~~~~~~~vLeiG~g--~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~   91 (188)
                      ...++++||-+|+|  .|..++.+++... +.+|+++|.+++..+.+++    .+..   .++.   .+..+.+.++.  
T Consensus       167 ~~~~g~~vlV~Gagg~iG~~~~~~a~~~~-Ga~Vi~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~--  236 (347)
T 1jvb_A          167 SLDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEAVEAAKR----AGAD---YVINASMQDPLAEIRRIT--  236 (347)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHHT-CCEEEEEESSHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHHT--
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCC---EEecCCCccHHHHHHHHh--
Confidence            45577899999987  5566777777642 5689999999988777754    2422   1222   12222233331  


Q ss_pred             ccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           92 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        92 ~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                        ..+.+|++|-....   ...++.+.+.|+++|.++.-.
T Consensus       237 --~~~~~d~vi~~~g~---~~~~~~~~~~l~~~G~iv~~g  271 (347)
T 1jvb_A          237 --ESKGVDAVIDLNNS---EKTLSVYPKALAKQGKYVMVG  271 (347)
T ss_dssp             --TTSCEEEEEESCCC---HHHHTTGGGGEEEEEEEEECC
T ss_pred             --cCCCceEEEECCCC---HHHHHHHHHHHhcCCEEEEEC
Confidence              11479999865432   345778889999999998754

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=96.37  E-value=0.014  Score=46.29  Aligned_cols=102  Identities=12%  Similarity=0.119  Sum_probs=64.7

Q ss_pred             HcCCCEEEEEccc-chHHHHHHHhhCCCC-CEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcc---hHHHHHHHhhcc
Q 029764           18 LVNAKKTIEIGVF-TGYSLLLTALTIPED-GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE---ALSVLDQLLKYS   92 (188)
Q Consensus        18 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~~~   92 (188)
                      ..++.+||-+|+| .|..++.+|+..  + .+|++++.+++..+.+++    .|..   .++..+   ..+....+.+. 
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~v~~~-  262 (380)
T 1vj0_A          193 SFAGKTVVIQGAGPLGLFGVVIARSL--GAENVIVIAGSPNRLKLAEE----IGAD---LTLNRRETSVEERRKAIMDI-  262 (380)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHT--TBSEEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHHHH-
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHc--CCceEEEEcCCHHHHHHHHH----cCCc---EEEeccccCcchHHHHHHHH-
Confidence            4566799999965 467788888875  5 599999999988777663    3532   223322   22222222111 


Q ss_pred             cCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764           93 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        93 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      .....+|+||-....   ...++.+++.|+++|.++.-..
T Consensus       263 ~~g~g~Dvvid~~g~---~~~~~~~~~~l~~~G~iv~~G~  299 (380)
T 1vj0_A          263 THGRGADFILEATGD---SRALLEGSELLRRGGFYSVAGV  299 (380)
T ss_dssp             TTTSCEEEEEECSSC---TTHHHHHHHHEEEEEEEEECCC
T ss_pred             hCCCCCcEEEECCCC---HHHHHHHHHHHhcCCEEEEEec
Confidence            012379999865432   2346778899999999987543

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=96.34  E-value=0.01  Score=46.63  Aligned_cols=101  Identities=16%  Similarity=0.131  Sum_probs=63.6

Q ss_pred             HHcCCCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           17 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        17 ~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      +..++++||-+|+  |.|..++.+++..  +.+|++++.+++..+.+++    .+....+.....+..+.+.+..    .
T Consensus       167 ~~~~g~~vlV~GasggiG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~ga~~~~d~~~~~~~~~~~~~~----~  236 (351)
T 1yb5_A          167 CVKAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQ----NGAHEVFNHREVNYIDKIKKYV----G  236 (351)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSEEEETTSTTHHHHHHHHH----C
T ss_pred             CCCCcCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCChhHHHHHHH----cCCCEEEeCCCchHHHHHHHHc----C
Confidence            3456789999996  5677777888764  5799999999887775543    3432111111112222222221    1


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      ...+|++|-....    ..+..+++.|+++|.+++-.
T Consensus       237 ~~~~D~vi~~~G~----~~~~~~~~~l~~~G~iv~~g  269 (351)
T 1yb5_A          237 EKGIDIIIEMLAN----VNLSKDLSLLSHGGRVIVVG  269 (351)
T ss_dssp             TTCEEEEEESCHH----HHHHHHHHHEEEEEEEEECC
T ss_pred             CCCcEEEEECCCh----HHHHHHHHhccCCCEEEEEe
Confidence            2479999865422    34677889999999998754

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=96.31  E-value=0.028  Score=43.02  Aligned_cols=93  Identities=17%  Similarity=0.168  Sum_probs=64.0

Q ss_pred             HcCCCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch-HHHHHHHhhcccC
Q 029764           18 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA-LSVLDQLLKYSEN   94 (188)
Q Consensus        18 ~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~~   94 (188)
                      ..++++||-+|+  |.|..++.+|+..  +.+|++++.+++..+.+++    .|..   ..+..+. .+....+      
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~ga~---~~~~~~~~~~~~~~~------  187 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAM--GLRVLAAASRPEKLALPLA----LGAE---EAATYAEVPERAKAW------  187 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSGGGSHHHHH----TTCS---EEEEGGGHHHHHHHT------
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHh----cCCC---EEEECCcchhHHHHh------
Confidence            456789999997  5677888888875  5699999999988877654    3432   2222222 2332222      


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                       ..+|++|- ...    ..++.+.+.|+++|.++.-.
T Consensus       188 -~~~d~vid-~g~----~~~~~~~~~l~~~G~~v~~g  218 (302)
T 1iz0_A          188 -GGLDLVLE-VRG----KEVEESLGLLAHGGRLVYIG  218 (302)
T ss_dssp             -TSEEEEEE-CSC----TTHHHHHTTEEEEEEEEEC-
T ss_pred             -cCceEEEE-CCH----HHHHHHHHhhccCCEEEEEe
Confidence             57999987 543    24678889999999988743

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=96.24  E-value=0.014  Score=45.77  Aligned_cols=99  Identities=12%  Similarity=0.105  Sum_probs=64.3

Q ss_pred             HHcCC--CEEEEEcc--cchHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE---cchHHHHHHH
Q 029764           17 RLVNA--KKTIEIGV--FTGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIE---SEALSVLDQL   88 (188)
Q Consensus        17 ~~~~~--~~vLeiG~--g~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~---~d~~~~~~~~   88 (188)
                      ...++  ++||-.|+  |.|..++.+++..  +. +|++++.+++..+.+++.   .|..   ..+.   .+..+.+.+.
T Consensus       155 ~~~~g~~~~vlI~GasggiG~~~~~~a~~~--Ga~~Vi~~~~~~~~~~~~~~~---~g~~---~~~d~~~~~~~~~~~~~  226 (357)
T 2zb4_A          155 HITAGSNKTMVVSGAAGACGSVAGQIGHFL--GCSRVVGICGTHEKCILLTSE---LGFD---AAINYKKDNVAEQLRES  226 (357)
T ss_dssp             CCCTTSCCEEEESSTTBHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHHT---SCCS---EEEETTTSCHHHHHHHH
T ss_pred             CCCCCCccEEEEECCCcHHHHHHHHHHHHC--CCCeEEEEeCCHHHHHHHHHH---cCCc---eEEecCchHHHHHHHHh
Confidence            45567  89999997  5666777777764  56 999999988776655542   3432   1222   1222233222


Q ss_pred             hhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764           89 LKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        89 ~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      .     .+.+|++|-....    ..++.+.+.|+++|.+++-..
T Consensus       227 ~-----~~~~d~vi~~~G~----~~~~~~~~~l~~~G~iv~~G~  261 (357)
T 2zb4_A          227 C-----PAGVDVYFDNVGG----NISDTVISQMNENSHIILCGQ  261 (357)
T ss_dssp             C-----TTCEEEEEESCCH----HHHHHHHHTEEEEEEEEECCC
T ss_pred             c-----CCCCCEEEECCCH----HHHHHHHHHhccCcEEEEECC
Confidence            1     2379999865432    567888899999999987543

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=96.16  E-value=0.0093  Score=46.44  Aligned_cols=69  Identities=9%  Similarity=-0.010  Sum_probs=50.0

Q ss_pred             HHHHHHHH--HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029764           10 QLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   83 (188)
Q Consensus        10 ~~l~~l~~--~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   83 (188)
                      +++..++.  ..++..|||..||+|..+......   +.+.+++|+++...+.+++++...+..  ...+.+|+.+
T Consensus       240 ~l~~~~i~~~~~~~~~VlDpF~GsGtt~~aa~~~---gr~~ig~e~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~  310 (323)
T 1boo_A          240 KLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERE---SRKWISFEMKPEYVAASAFRFLDNNIS--EEKITDIYNR  310 (323)
T ss_dssp             HHHHHHHHHHCCTTCEEEETTCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHGGGSCSCSC--HHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHhcccc--hHHHHHHHHH
Confidence            34444444  346679999999999988887664   679999999999999999988765532  3334444443

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=96.16  E-value=0.033  Score=43.45  Aligned_cols=98  Identities=14%  Similarity=0.079  Sum_probs=64.1

Q ss_pred             HHcCCCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           17 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        17 ~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      ...++.+||-+|+  +.|..++.+|+..  +.+|+++ .+++..+.+++    .|... +. ...+..+.+.+..    .
T Consensus       147 ~~~~g~~VlV~Ga~g~iG~~~~q~a~~~--Ga~Vi~~-~~~~~~~~~~~----lGa~~-i~-~~~~~~~~~~~~~----~  213 (343)
T 3gaz_A          147 QVQDGQTVLIQGGGGGVGHVAIQIALAR--GARVFAT-ARGSDLEYVRD----LGATP-ID-ASREPEDYAAEHT----A  213 (343)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEE-ECHHHHHHHHH----HTSEE-EE-TTSCHHHHHHHHH----T
T ss_pred             CCCCCCEEEEecCCCHHHHHHHHHHHHC--CCEEEEE-eCHHHHHHHHH----cCCCE-ec-cCCCHHHHHHHHh----c
Confidence            3456789999993  5678888888875  5699999 77877666654    35322 22 1223333333332    1


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      ...+|++|-....    ..++.+.+.|+++|.++.-.
T Consensus       214 ~~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~g  246 (343)
T 3gaz_A          214 GQGFDLVYDTLGG----PVLDASFSAVKRFGHVVSCL  246 (343)
T ss_dssp             TSCEEEEEESSCT----HHHHHHHHHEEEEEEEEESC
T ss_pred             CCCceEEEECCCc----HHHHHHHHHHhcCCeEEEEc
Confidence            3579988854332    46778889999999998753

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=96.13  E-value=0.024  Score=44.47  Aligned_cols=100  Identities=8%  Similarity=0.041  Sum_probs=63.2

Q ss_pred             HcCCCEEEEEc--ccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764           18 LVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        18 ~~~~~~vLeiG--~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      ..++++||-+|  .|.|..++.+++..  +.+|++++.+++..+.+++    .+...-+.....+..+.+.+..    ..
T Consensus       160 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~----~~  229 (354)
T 2j8z_A          160 VQAGDYVLIHAGLSGVGTAAIQLTRMA--GAIPLVTAGSQKKLQMAEK----LGAAAGFNYKKEDFSEATLKFT----KG  229 (354)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHT----TT
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcEEEecCChHHHHHHHHHh----cC
Confidence            45677999998  35677777787764  6799999999888777743    2422111111122223332221    12


Q ss_pred             CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      ..+|++|-.....    .+..+.+.|+++|.+++-.
T Consensus       230 ~~~d~vi~~~G~~----~~~~~~~~l~~~G~iv~~G  261 (354)
T 2j8z_A          230 AGVNLILDCIGGS----YWEKNVNCLALDGRWVLYG  261 (354)
T ss_dssp             SCEEEEEESSCGG----GHHHHHHHEEEEEEEEECC
T ss_pred             CCceEEEECCCch----HHHHHHHhccCCCEEEEEe
Confidence            4799998665432    3567789999999998754

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=96.10  E-value=0.043  Score=43.01  Aligned_cols=100  Identities=8%  Similarity=0.058  Sum_probs=64.1

Q ss_pred             HHHcCC------CEEEEEccc-chHHH-HHHH-hhCCCCCE-EEEEeCCch---hHHHHHHHHHhcCCCCcEEEEEcchH
Q 029764           16 LRLVNA------KKTIEIGVF-TGYSL-LLTA-LTIPEDGQ-ITAIDVNRE---TYEIGLPIIKKAGVDHKINFIESEAL   82 (188)
Q Consensus        16 ~~~~~~------~~vLeiG~g-~G~~~-~~la-~~~~~~~~-v~~iD~~~~---~~~~a~~~~~~~~~~~~~~~~~~d~~   82 (188)
                      +...++      .+||-+|+| .|..+ +.+| +..  +.+ |++++.+++   ..+.+++    +|.. .+.....+..
T Consensus       162 ~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~--Ga~~Vi~~~~~~~~~~~~~~~~~----lGa~-~v~~~~~~~~  234 (357)
T 2b5w_A          162 AYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDK--GYENLYCLGRRDRPDPTIDIIEE----LDAT-YVDSRQTPVE  234 (357)
T ss_dssp             HHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTT--CCCEEEEEECCCSSCHHHHHHHH----TTCE-EEETTTSCGG
T ss_pred             cCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHc--CCcEEEEEeCCcccHHHHHHHHH----cCCc-ccCCCccCHH
Confidence            456677      899999974 36677 7788 754  455 999999888   7776654    3421 1211112333


Q ss_pred             HHHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764           83 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        83 ~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      + +.++  .    +.+|+||-....   ...++.+++.|+++|.++.-..
T Consensus       235 ~-i~~~--~----gg~Dvvid~~g~---~~~~~~~~~~l~~~G~iv~~g~  274 (357)
T 2b5w_A          235 D-VPDV--Y----EQMDFIYEATGF---PKHAIQSVQALAPNGVGALLGV  274 (357)
T ss_dssp             G-HHHH--S----CCEEEEEECSCC---HHHHHHHHHHEEEEEEEEECCC
T ss_pred             H-HHHh--C----CCCCEEEECCCC---hHHHHHHHHHHhcCCEEEEEeC
Confidence            3 3333  1    389999854322   3457888899999999987543

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=96.09  E-value=0.014  Score=45.62  Aligned_cols=68  Identities=10%  Similarity=-0.070  Sum_probs=50.9

Q ss_pred             CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029764           21 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  100 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~  100 (188)
                      ..+++|+.||+|..++.+...-  -..+.++|+++.+++..+.|+...     .   .+|..++....      ...+|+
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG--~~~v~~~e~d~~a~~t~~~N~~~~-----~---~~Di~~~~~~~------~~~~D~   74 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCG--AECVYSNEWDKYAQEVYEMNFGEK-----P---EGDITQVNEKT------IPDHDI   74 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTT--CEEEEEECCCHHHHHHHHHHHSCC-----C---BSCGGGSCGGG------SCCCSE
T ss_pred             CCcEEEECCCcCHHHHHHHHCC--CeEEEEEeCCHHHHHHHHHHcCCC-----C---cCCHHHcCHhh------CCCCCE
Confidence            4689999999999999887651  235888999999999999887421     1   57776643321      356999


Q ss_pred             EEEe
Q 029764          101 AFVD  104 (188)
Q Consensus       101 i~id  104 (188)
                      |+.+
T Consensus        75 l~~g   78 (327)
T 2c7p_A           75 LCAG   78 (327)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            9987

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=96.08  E-value=0.03  Score=43.97  Aligned_cols=99  Identities=20%  Similarity=0.134  Sum_probs=64.5

Q ss_pred             HHcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchH-HHHHHHhhcccC
Q 029764           17 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL-SVLDQLLKYSEN   94 (188)
Q Consensus        17 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~   94 (188)
                      ...++.+||-+|+| .|..++.+|+..  +.+|++++.+++..+.+++    .|..   .++..... +....+      
T Consensus       176 ~~~~g~~VlV~GaG~vG~~~~qlak~~--Ga~Vi~~~~~~~~~~~~~~----lGa~---~v~~~~~~~~~~~~~------  240 (360)
T 1piw_A          176 GCGPGKKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSRKREDAMK----MGAD---HYIATLEEGDWGEKY------  240 (360)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHH----HTCS---EEEEGGGTSCHHHHS------
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHH----cCCC---EEEcCcCchHHHHHh------
Confidence            45677899999975 367788888865  5689999999998887765    3422   22322222 233332      


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      .+.+|+||-...... ...++.+.+.|+++|.++.-.
T Consensus       241 ~~~~D~vid~~g~~~-~~~~~~~~~~l~~~G~iv~~g  276 (360)
T 1piw_A          241 FDTFDLIVVCASSLT-DIDFNIMPKAMKVGGRIVSIS  276 (360)
T ss_dssp             CSCEEEEEECCSCST-TCCTTTGGGGEEEEEEEEECC
T ss_pred             hcCCCEEEECCCCCc-HHHHHHHHHHhcCCCEEEEec
Confidence            257999986543200 123566778999999998754

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=96.08  E-value=0.0067  Score=45.66  Aligned_cols=52  Identities=15%  Similarity=0.193  Sum_probs=39.7

Q ss_pred             EEEEEcchHHHHHHHhhcccCCCceeEEEEeCCcc-----------------chHHHHHHHHhccCcCeEEEEe
Q 029764           74 INFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-----------------NYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        74 ~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~-----------------~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      .+++++|+.+.+..+.     .+++|+||+|.+..                 .....++.+.++|+++|.+++.
T Consensus         5 ~~l~~gD~~~~l~~l~-----~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~   73 (260)
T 1g60_A            5 NKIHQMNCFDFLDQVE-----NKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF   73 (260)
T ss_dssp             SSEEECCHHHHHHHSC-----TTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CeEEechHHHHHHhcc-----ccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence            4678999999887752     46899999996421                 2245667778999999998875

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=96.05  E-value=0.034  Score=43.43  Aligned_cols=94  Identities=18%  Similarity=0.161  Sum_probs=63.3

Q ss_pred             CCCEEEEEc-c-cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE--cchHHHHHHHhhcccCC
Q 029764           20 NAKKTIEIG-V-FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSENE   95 (188)
Q Consensus        20 ~~~~vLeiG-~-g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~~~   95 (188)
                      ++.+||-+| + +.|..++.+|+..  +.+|++++.+++..+.+++    .|..   .++.  .+..+.+.+.     ..
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~-----~~  215 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAY--GLRVITTASRNETIEWTKK----MGAD---IVLNHKESLLNQFKTQ-----GI  215 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEECCSHHHHHHHHH----HTCS---EEECTTSCHHHHHHHH-----TC
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCc---EEEECCccHHHHHHHh-----CC
Confidence            678999984 3 4577888888865  5699999999988877776    3432   1222  2333333333     24


Q ss_pred             CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ..+|+||-...   ....++.+.+.|+++|.++.-
T Consensus       216 ~g~Dvv~d~~g---~~~~~~~~~~~l~~~G~iv~~  247 (346)
T 3fbg_A          216 ELVDYVFCTFN---TDMYYDDMIQLVKPRGHIATI  247 (346)
T ss_dssp             CCEEEEEESSC---HHHHHHHHHHHEEEEEEEEES
T ss_pred             CCccEEEECCC---chHHHHHHHHHhccCCEEEEE
Confidence            68998886432   245578888999999999763

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=96.03  E-value=0.0091  Score=46.48  Aligned_cols=54  Identities=19%  Similarity=0.238  Sum_probs=41.1

Q ss_pred             CcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCcc-----------------chHHHHHHHHhccCcCeEEEEe
Q 029764           72 HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-----------------NYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        72 ~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~-----------------~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      +...++++|+.+.+..+     ..+++|+|++|.+..                 .....+..+.++|++||.+++.
T Consensus        13 ~~~~ii~gD~~~~l~~l-----~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~   83 (323)
T 1boo_A           13 SNGSMYIGDSLELLESF-----PEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD   83 (323)
T ss_dssp             SSEEEEESCHHHHGGGS-----CSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCceEEeCcHHHHHhhC-----CCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEE
Confidence            45789999998876654     246899999996421                 2456778888999999998874

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=95.91  E-value=0.017  Score=44.93  Aligned_cols=57  Identities=14%  Similarity=0.207  Sum_probs=43.1

Q ss_pred             HHHHHHHH--HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCc---hhHHHHHHHHHhcC
Q 029764           10 QLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNR---ETYEIGLPIIKKAG   69 (188)
Q Consensus        10 ~~l~~l~~--~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~---~~~~~a~~~~~~~~   69 (188)
                      +++..++.  ..++..|||..||+|..+......   +.+.+++|+++   +.++.+++++...+
T Consensus       230 ~l~~~~i~~~~~~~~~vlDpF~GsGtt~~aa~~~---~r~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          230 AVIERLVRALSHPGSTVLDFFAGSGVTARVAIQE---GRNSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             HHHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHH---TCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHhCCCCCEEEecCCCCCHHHHHHHHc---CCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence            34444443  346679999999999998887775   67999999999   99999999887655

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.90  E-value=0.051  Score=36.59  Aligned_cols=93  Identities=9%  Similarity=0.037  Sum_probs=58.1

Q ss_pred             CEEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCce
Q 029764           22 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSF   98 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~   98 (188)
                      .+|+=+|+  |..+..+++.+. .+.+|+.+|.+++.++.+++    .+    +.++.+|+.+  .+...     ....+
T Consensus         8 ~~viIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~----~g----~~~i~gd~~~~~~l~~a-----~i~~a   72 (140)
T 3fwz_A            8 NHALLVGY--GRVGSLLGEKLLASDIPLVVIETSRTRVDELRE----RG----VRAVLGNAANEEIMQLA-----HLECA   72 (140)
T ss_dssp             SCEEEECC--SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----TT----CEEEESCTTSHHHHHHT-----TGGGC
T ss_pred             CCEEEECc--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----cC----CCEEECCCCCHHHHHhc-----CcccC
Confidence            47888887  555555554442 25789999999998776654    23    5678888754  33332     12578


Q ss_pred             eEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764           99 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      |++++..+.......+-...+.+.++..++.
T Consensus        73 d~vi~~~~~~~~n~~~~~~a~~~~~~~~iia  103 (140)
T 3fwz_A           73 KWLILTIPNGYEAGEIVASARAKNPDIEIIA  103 (140)
T ss_dssp             SEEEECCSCHHHHHHHHHHHHHHCSSSEEEE
T ss_pred             CEEEEECCChHHHHHHHHHHHHHCCCCeEEE
Confidence            9998865443323333344566777777665

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=95.84  E-value=0.017  Score=44.95  Aligned_cols=53  Identities=13%  Similarity=0.112  Sum_probs=40.3

Q ss_pred             cEEEE-EcchHHHHHHHhhcccCCCceeEEEEeCCcc--------------chHHHHHHHHhccCcCeEEEEe
Q 029764           73 KINFI-ESEALSVLDQLLKYSENEGSFDYAFVDADKD--------------NYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        73 ~~~~~-~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~--------------~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ...++ ++|+.+.+..+.     .+++|+||+|.+..              .....+..+.++|++||.+++.
T Consensus        38 ~~~l~i~gD~l~~L~~l~-----~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~  105 (319)
T 1eg2_A           38 TRHVYDVCDCLDTLAKLP-----DDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF  105 (319)
T ss_dssp             EEEEEEECCHHHHHHTSC-----TTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cceEEECCcHHHHHHhCc-----cCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            46777 999999887652     46899999996432              1245667778999999998885

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=95.77  E-value=0.034  Score=42.71  Aligned_cols=75  Identities=13%  Similarity=0.067  Sum_probs=51.6

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCE-EEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      ...+++|+.||.|..+..+.+.-- ... +.++|+++.+.+..+.|+.      ...++.+|..++...-...   .+.+
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~aG~-~~~~v~a~E~d~~a~~ty~~N~~------~~~~~~~DI~~i~~~~i~~---~~~~   84 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDLGI-QVDRYIASEVCEDSITVGMVRHQ------GKIMYVGDVRSVTQKHIQE---WGPF   84 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHTTB-CEEEEEEECCCHHHHHHHHHHTT------TCEEEECCGGGCCHHHHHH---TCCC
T ss_pred             CCCEEEEeCcCccHHHHHHHHCCC-ccceEEEEECCHHHHHHHHHhCC------CCceeCCChHHccHHHhcc---cCCc
Confidence            445899999999999988876521 122 6899999998887777642      2356788887643321111   2579


Q ss_pred             eEEEEe
Q 029764           99 DYAFVD  104 (188)
Q Consensus        99 D~i~id  104 (188)
                      |+++..
T Consensus        85 Dll~gg   90 (295)
T 2qrv_A           85 DLVIGG   90 (295)
T ss_dssp             SEEEEC
T ss_pred             CEEEec
Confidence            999876

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=95.62  E-value=0.017  Score=44.28  Aligned_cols=54  Identities=19%  Similarity=0.131  Sum_probs=38.8

Q ss_pred             CcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCcc---c--------------------hHHHHHHHHhccCcCeEEE
Q 029764           72 HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---N--------------------YCNYHERLMKLLKVGGIAV  128 (188)
Q Consensus        72 ~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~---~--------------------~~~~~~~~~~~L~~gG~lv  128 (188)
                      .+++++++|+.+.+..+     ..++||+|+.|.+..   .                    +..++.++.++|++||.++
T Consensus        20 ~~~~i~~gD~~~~l~~l-----~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~   94 (297)
T 2zig_A           20 GVHRLHVGDAREVLASF-----PEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLV   94 (297)
T ss_dssp             -CEEEEESCHHHHHTTS-----CTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             cCCEEEECcHHHHHhhC-----CCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence            35789999999876654     247899999995321   0                    1235667789999999987


Q ss_pred             Ee
Q 029764          129 YD  130 (188)
Q Consensus       129 ~~  130 (188)
                      +.
T Consensus        95 i~   96 (297)
T 2zig_A           95 IV   96 (297)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=95.58  E-value=0.12  Score=40.73  Aligned_cols=98  Identities=10%  Similarity=0.084  Sum_probs=62.6

Q ss_pred             cCCCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           19 VNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        19 ~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      .++.+||-+|+  +.|..++.+|+..  +.+|+++. +++..+.+++    +|...-+.....+..+.+.++.     .+
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~--Ga~Vi~~~-~~~~~~~~~~----lGa~~vi~~~~~~~~~~v~~~t-----~g  230 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLS--GYIPIATC-SPHNFDLAKS----RGAEEVFDYRAPNLAQTIRTYT-----KN  230 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEE-CGGGHHHHHH----TTCSEEEETTSTTHHHHHHHHT-----TT
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHC--CCEEEEEe-CHHHHHHHHH----cCCcEEEECCCchHHHHHHHHc-----cC
Confidence            56779999998  3788889999875  56888874 7777665544    4532212211233333333332     34


Q ss_pred             ceeEEEEeCCccchHHHHHHHHhcc-CcCeEEEEec
Q 029764           97 SFDYAFVDADKDNYCNYHERLMKLL-KVGGIAVYDN  131 (188)
Q Consensus        97 ~~D~i~id~~~~~~~~~~~~~~~~L-~~gG~lv~~~  131 (188)
                      .+|++|-....   ...++.+++.| +++|.++.-.
T Consensus       231 ~~d~v~d~~g~---~~~~~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          231 NLRYALDCITN---VESTTFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             CCCEEEESSCS---HHHHHHHHHHSCTTCEEEEESS
T ss_pred             CccEEEECCCc---hHHHHHHHHHhhcCCCEEEEEe
Confidence            59998854322   34567788888 6999998754

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=95.52  E-value=0.14  Score=40.21  Aligned_cols=95  Identities=20%  Similarity=0.188  Sum_probs=60.4

Q ss_pred             CCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           20 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        20 ~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      ++.+||-+|+|. |..++.+|+..  +.+|++++.+++..+.+++   ..|..   .++.....+.+.+.      .+.+
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~---~lGa~---~v~~~~~~~~~~~~------~~~~  252 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAF--GSKVTVISTSPSKKEEALK---NFGAD---SFLVSRDQEQMQAA------AGTL  252 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCGGGHHHHHH---TSCCS---EEEETTCHHHHHHT------TTCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH---hcCCc---eEEeccCHHHHHHh------hCCC
Confidence            678999999753 56777788765  5699999999887766553   33432   22222222333332      2579


Q ss_pred             eEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           99 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      |+||-......   .++.+.+.|+++|.++.-.
T Consensus       253 D~vid~~g~~~---~~~~~~~~l~~~G~iv~~g  282 (366)
T 1yqd_A          253 DGIIDTVSAVH---PLLPLFGLLKSHGKLILVG  282 (366)
T ss_dssp             EEEEECCSSCC---CSHHHHHHEEEEEEEEECC
T ss_pred             CEEEECCCcHH---HHHHHHHHHhcCCEEEEEc
Confidence            99986543221   2355678889999988754

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=95.48  E-value=0.024  Score=44.18  Aligned_cols=94  Identities=14%  Similarity=0.115  Sum_probs=62.1

Q ss_pred             CCCEEEEEccc-chHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE---cchHHHHHHHhhcccC
Q 029764           20 NAKKTIEIGVF-TGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIE---SEALSVLDQLLKYSEN   94 (188)
Q Consensus        20 ~~~~vLeiG~g-~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~~~   94 (188)
                      ++.+||-+|+| .|..++.+|+..  +. +|++++.+++..+.+++. .     +  ..+.   .+..+.+.++.     
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~--Ga~~Vi~~~~~~~~~~~~~~l-a-----~--~v~~~~~~~~~~~~~~~~-----  228 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRAS--GAGPILVSDPNPYRLAFARPY-A-----D--RLVNPLEEDLLEVVRRVT-----  228 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHT--TCCSEEEECSCHHHHGGGTTT-C-----S--EEECTTTSCHHHHHHHHH-----
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHh-H-----H--hccCcCccCHHHHHHHhc-----
Confidence            67899999975 367778888875  55 899999998877666542 1     1  1222   23333333331     


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      ...+|+||-....   ...++.+.+.|+++|.++.-.
T Consensus       229 ~~g~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~g  262 (343)
T 2dq4_A          229 GSGVEVLLEFSGN---EAAIHQGLMALIPGGEARILG  262 (343)
T ss_dssp             SSCEEEEEECSCC---HHHHHHHHHHEEEEEEEEECC
T ss_pred             CCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEEEe
Confidence            2579999865432   345778889999999988753

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=95.36  E-value=0.033  Score=45.30  Aligned_cols=101  Identities=13%  Similarity=0.067  Sum_probs=64.7

Q ss_pred             HHcCCCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch-------------
Q 029764           17 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA-------------   81 (188)
Q Consensus        17 ~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~-------------   81 (188)
                      ...++.+||-+|+  +.|..++.+|+..  +.++++++.+++.++.+++    +|...-+.....|.             
T Consensus       225 ~~~~g~~VlV~GasG~vG~~avqlak~~--Ga~vi~~~~~~~~~~~~~~----lGa~~vi~~~~~d~~~~~~~~~~~~~~  298 (456)
T 3krt_A          225 GMKQGDNVLIWGASGGLGSYATQFALAG--GANPICVVSSPQKAEICRA----MGAEAIIDRNAEGYRFWKDENTQDPKE  298 (456)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCCEEEETTTTTCCSEEETTEECHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHc--CCeEEEEECCHHHHHHHHh----hCCcEEEecCcCcccccccccccchHH
Confidence            4456789999996  5677888888875  6789999988888777754    34321111101110             


Q ss_pred             ----HHHHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           82 ----LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        82 ----~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                          .+.+.++.    ....+|+||-....    ..++.+.+.|+++|.+++-.
T Consensus       299 ~~~~~~~i~~~t----~g~g~Dvvid~~G~----~~~~~~~~~l~~~G~iv~~G  344 (456)
T 3krt_A          299 WKRFGKRIRELT----GGEDIDIVFEHPGR----ETFGASVFVTRKGGTITTCA  344 (456)
T ss_dssp             HHHHHHHHHHHH----TSCCEEEEEECSCH----HHHHHHHHHEEEEEEEEESC
T ss_pred             HHHHHHHHHHHh----CCCCCcEEEEcCCc----hhHHHHHHHhhCCcEEEEEe
Confidence                12222221    13589988754322    46788889999999999854

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=95.17  E-value=0.1  Score=40.85  Aligned_cols=97  Identities=20%  Similarity=0.252  Sum_probs=61.5

Q ss_pred             Hc-CCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764           18 LV-NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        18 ~~-~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      .. ++.+||-+|+| .|..++.+|+..  +.+|++++.+++..+.+++   ..|...   ++..+..+.+.+.      .
T Consensus       177 ~~~~g~~VlV~GaG~vG~~a~qlak~~--Ga~Vi~~~~~~~~~~~~~~---~lGa~~---vi~~~~~~~~~~~------~  242 (357)
T 2cf5_A          177 LKQPGLRGGILGLGGVGHMGVKIAKAM--GHHVTVISSSNKKREEALQ---DLGADD---YVIGSDQAKMSEL------A  242 (357)
T ss_dssp             TTSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSTTHHHHHHT---TSCCSC---EEETTCHHHHHHS------T
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH---HcCCce---eeccccHHHHHHh------c
Confidence            44 67899999975 356777788765  5699999999887665552   345322   2222212333332      2


Q ss_pred             CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      +.+|+||-......   .++.+.+.|+++|.++.-.
T Consensus       243 ~g~D~vid~~g~~~---~~~~~~~~l~~~G~iv~~G  275 (357)
T 2cf5_A          243 DSLDYVIDTVPVHH---ALEPYLSLLKLDGKLILMG  275 (357)
T ss_dssp             TTEEEEEECCCSCC---CSHHHHTTEEEEEEEEECS
T ss_pred             CCCCEEEECCCChH---HHHHHHHHhccCCEEEEeC
Confidence            47999985433221   2456778999999998754

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=95.17  E-value=0.091  Score=41.17  Aligned_cols=107  Identities=13%  Similarity=0.071  Sum_probs=60.2

Q ss_pred             HcCC-CEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE---cchHHHHHHHhhc
Q 029764           18 LVNA-KKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE---SEALSVLDQLLKY   91 (188)
Q Consensus        18 ~~~~-~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~   91 (188)
                      ..++ .+||-+|+  +.|..++.+|+..  +.+++++..+++.....++.+..+|...-+....   .+..+.+.++..+
T Consensus       164 ~~~g~~~VlV~Ga~G~vG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~~t~~  241 (364)
T 1gu7_A          164 LTPGKDWFIQNGGTSAVGKYASQIGKLL--NFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQ  241 (364)
T ss_dssp             CCTTTCEEEESCTTSHHHHHHHHHHHHH--TCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHH
T ss_pred             cCCCCcEEEECCCCcHHHHHHHHHHHHC--CCEEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHHHhhc
Confidence            4466 89999985  5677888888875  5688887765554222223334456431111111   2222233322100


Q ss_pred             ccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764           92 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        92 ~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                        ....+|+||-....   .... .+++.|+++|.++.-..
T Consensus       242 --~~~g~Dvvid~~G~---~~~~-~~~~~l~~~G~~v~~g~  276 (364)
T 1gu7_A          242 --SGGEAKLALNCVGG---KSST-GIARKLNNNGLMLTYGG  276 (364)
T ss_dssp             --HTCCEEEEEESSCH---HHHH-HHHHTSCTTCEEEECCC
T ss_pred             --cCCCceEEEECCCc---hhHH-HHHHHhccCCEEEEecC
Confidence              03579999854322   2233 66799999999987543

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=95.17  E-value=0.034  Score=43.03  Aligned_cols=92  Identities=9%  Similarity=0.059  Sum_probs=58.9

Q ss_pred             EEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc-ch-HHHHHHHhhcccCCCce
Q 029764           23 KTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EA-LSVLDQLLKYSENEGSF   98 (188)
Q Consensus        23 ~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~-~~~~~~~~~~~~~~~~~   98 (188)
                      +||-+|+  |.|..++.+|+..  +.++++++.+++..+.+++    .|...   ++.. +. .+....+     ..+.+
T Consensus       152 ~VlV~Ga~G~vG~~~~q~a~~~--Ga~vi~~~~~~~~~~~~~~----lGa~~---~i~~~~~~~~~~~~~-----~~~~~  217 (328)
T 1xa0_A          152 PVLVTGATGGVGSLAVSMLAKR--GYTVEASTGKAAEHDYLRV----LGAKE---VLAREDVMAERIRPL-----DKQRW  217 (328)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCTTCHHHHHH----TTCSE---EEECC---------C-----CSCCE
T ss_pred             eEEEecCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH----cCCcE---EEecCCcHHHHHHHh-----cCCcc
Confidence            7999996  6778888888875  5689999999888777754    34321   2221 11 1111221     13479


Q ss_pred             eEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764           99 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      |++|-....    ..++.+.+.++++|.++.-..
T Consensus       218 d~vid~~g~----~~~~~~~~~l~~~G~~v~~G~  247 (328)
T 1xa0_A          218 AAAVDPVGG----RTLATVLSRMRYGGAVAVSGL  247 (328)
T ss_dssp             EEEEECSTT----TTHHHHHHTEEEEEEEEECSC
T ss_pred             cEEEECCcH----HHHHHHHHhhccCCEEEEEee
Confidence            998754332    246778899999999987543

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=95.15  E-value=0.11  Score=40.43  Aligned_cols=97  Identities=9%  Similarity=-0.032  Sum_probs=58.8

Q ss_pred             CEEEEE-cc-cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764           22 KKTIEI-GV-FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   99 (188)
Q Consensus        22 ~~vLei-G~-g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   99 (188)
                      ++||-. |+ |.|..++.+|+..  +.+|++++.+++..+.+++    .|...-+.....+..+.+.+...    ...+|
T Consensus       166 ~~vli~gg~g~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----~Ga~~~~~~~~~~~~~~v~~~~~----~~g~D  235 (349)
T 3pi7_A          166 KAFVMTAGASQLCKLIIGLAKEE--GFRPIVTVRRDEQIALLKD----IGAAHVLNEKAPDFEATLREVMK----AEQPR  235 (349)
T ss_dssp             SEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESCGGGHHHHHH----HTCSEEEETTSTTHHHHHHHHHH----HHCCC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCCEEEECCcHHHHHHHHHHhc----CCCCc
Confidence            566654 33 3566777777765  5699999999998887764    34321111111233333333321    14799


Q ss_pred             EEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764          100 YAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus       100 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      ++|-....    ..+..+.+.|+++|.++.-..
T Consensus       236 ~vid~~g~----~~~~~~~~~l~~~G~iv~~G~  264 (349)
T 3pi7_A          236 IFLDAVTG----PLASAIFNAMPKRARWIIYGR  264 (349)
T ss_dssp             EEEESSCH----HHHHHHHHHSCTTCEEEECCC
T ss_pred             EEEECCCC----hhHHHHHhhhcCCCEEEEEec
Confidence            98754332    234678899999999998543

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=95.03  E-value=0.041  Score=43.02  Aligned_cols=73  Identities=14%  Similarity=0.099  Sum_probs=50.5

Q ss_pred             CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029764           22 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  101 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i  101 (188)
                      .+++|+.||.|..+..+..+--....+.++|+++.+.+..+.|+..      ..++.+|..++...-..    ...+|++
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~------~~~~~~DI~~~~~~~~~----~~~~D~l   73 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE------TNLLNRNIQQLTPQVIK----KWNVDTI   73 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT------SCEECCCGGGCCHHHHH----HTTCCEE
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC------CceeccccccCCHHHhc----cCCCCEE
Confidence            4899999999999988876521013578999999998888877632      33567787664322111    1368999


Q ss_pred             EEe
Q 029764          102 FVD  104 (188)
Q Consensus       102 ~id  104 (188)
                      +..
T Consensus        74 ~gg   76 (333)
T 4h0n_A           74 LMS   76 (333)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            865

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=95.02  E-value=0.12  Score=41.83  Aligned_cols=100  Identities=14%  Similarity=0.040  Sum_probs=63.9

Q ss_pred             HHcCCCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch-------------
Q 029764           17 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA-------------   81 (188)
Q Consensus        17 ~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~-------------   81 (188)
                      ...++++||-+|+  |.|..++.+|+..  +.++++++.+++..+.+++    .|...-+.....+.             
T Consensus       217 ~~~~g~~VlV~GasG~iG~~a~qla~~~--Ga~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~~~~~~~  290 (447)
T 4a0s_A          217 QMKQGDIVLIWGASGGLGSYAIQFVKNG--GGIPVAVVSSAQKEAAVRA----LGCDLVINRAELGITDDIADDPRRVVE  290 (447)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCCCEEEHHHHTCCTTGGGCHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCCEEEecccccccccccccccccch
Confidence            4556789999996  4677888888875  6789999988887776643    35332111111110             


Q ss_pred             -----HHHHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           82 -----LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        82 -----~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                           .+.+.+..     ...+|++|-....    ..++.+.+.|+++|.++.-.
T Consensus       291 ~~~~~~~~v~~~~-----g~g~Dvvid~~G~----~~~~~~~~~l~~~G~iv~~G  336 (447)
T 4a0s_A          291 TGRKLAKLVVEKA-----GREPDIVFEHTGR----VTFGLSVIVARRGGTVVTCG  336 (447)
T ss_dssp             HHHHHHHHHHHHH-----SSCCSEEEECSCH----HHHHHHHHHSCTTCEEEESC
T ss_pred             hhhHHHHHHHHHh-----CCCceEEEECCCc----hHHHHHHHHHhcCCEEEEEe
Confidence                 11222221     3579998865432    35678889999999998854

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.01  E-value=0.37  Score=31.65  Aligned_cols=93  Identities=14%  Similarity=0.122  Sum_probs=54.0

Q ss_pred             CEEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCce
Q 029764           22 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSF   98 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~   98 (188)
                      .+|+=+|+  |..+..++..+. .+.+|+.+|.+++..+.+++.   .+    +.++.+|..+  .+...     ....+
T Consensus         5 m~i~IiG~--G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~---~~----~~~~~~d~~~~~~l~~~-----~~~~~   70 (140)
T 1lss_A            5 MYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---ID----ALVINGDCTKIKTLEDA-----GIEDA   70 (140)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---CS----SEEEESCTTSHHHHHHT-----TTTTC
T ss_pred             CEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh---cC----cEEEEcCCCCHHHHHHc-----CcccC
Confidence            57888877  666666555442 256899999988766544432   12    4556666533  22221     13578


Q ss_pred             eEEEEeCCccchHHHHHHHHhccCcCeEEE
Q 029764           99 DYAFVDADKDNYCNYHERLMKLLKVGGIAV  128 (188)
Q Consensus        99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv  128 (188)
                      |+|++..........+..+.+.+.++-+++
T Consensus        71 d~vi~~~~~~~~~~~~~~~~~~~~~~~ii~  100 (140)
T 1lss_A           71 DMYIAVTGKEEVNLMSSLLAKSYGINKTIA  100 (140)
T ss_dssp             SEEEECCSCHHHHHHHHHHHHHTTCCCEEE
T ss_pred             CEEEEeeCCchHHHHHHHHHHHcCCCEEEE
Confidence            999987544333334444556677764443

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=94.88  E-value=0.065  Score=41.85  Aligned_cols=98  Identities=13%  Similarity=0.095  Sum_probs=57.1

Q ss_pred             HHcCCCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           17 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        17 ~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      ...++.+||-.|+  +.|..++.+|+... ..+|++++ +++..+.++     .|...-+. ...+..+.+.++     .
T Consensus       139 ~~~~g~~VlV~Ga~G~vG~~a~qla~~~g-~~~V~~~~-~~~~~~~~~-----~ga~~~~~-~~~~~~~~~~~~-----~  205 (349)
T 4a27_A          139 NLREGMSVLVHSAGGGVGQAVAQLCSTVP-NVTVFGTA-STFKHEAIK-----DSVTHLFD-RNADYVQEVKRI-----S  205 (349)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHTTST-TCEEEEEE-CGGGHHHHG-----GGSSEEEE-TTSCHHHHHHHH-----C
T ss_pred             CCCCCCEEEEEcCCcHHHHHHHHHHHHcC-CcEEEEeC-CHHHHHHHH-----cCCcEEEc-CCccHHHHHHHh-----c
Confidence            3556789999997  45778888888654 56888887 454444333     34322122 122333333333     2


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      .+.+|+||-.....    .++.+++.|+++|.+++-.
T Consensus       206 ~~g~Dvv~d~~g~~----~~~~~~~~l~~~G~~v~~G  238 (349)
T 4a27_A          206 AEGVDIVLDCLCGD----NTGKGLSLLKPLGTYILYG  238 (349)
T ss_dssp             TTCEEEEEEECC-----------CTTEEEEEEEEEEC
T ss_pred             CCCceEEEECCCch----hHHHHHHHhhcCCEEEEEC
Confidence            46899998553322    2367889999999998754

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=94.83  E-value=0.039  Score=43.01  Aligned_cols=73  Identities=14%  Similarity=-0.062  Sum_probs=50.5

Q ss_pred             CCEEEEEcccchHHHHHHHhhCCCCCEE-EEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH-HHhhcccCCCce
Q 029764           21 AKKTIEIGVFTGYSLLLTALTIPEDGQI-TAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD-QLLKYSENEGSF   98 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~~~~~~v-~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~~   98 (188)
                      +.+++|+.||.|..+..+..+--....+ .++|+++.+.+..+.|+...       ++.+|..++.. .+.     ...+
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~-------~~~~DI~~~~~~~i~-----~~~~   77 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE-------VQVKNLDSISIKQIE-----SLNC   77 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC-------CBCCCTTTCCHHHHH-----HTCC
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC-------cccCChhhcCHHHhc-----cCCC
Confidence            4589999999999999887752101356 79999999999988887321       45667655422 221     1368


Q ss_pred             eEEEEeC
Q 029764           99 DYAFVDA  105 (188)
Q Consensus        99 D~i~id~  105 (188)
                      |+++...
T Consensus        78 Dil~ggp   84 (327)
T 3qv2_A           78 NTWFMSP   84 (327)
T ss_dssp             CEEEECC
T ss_pred             CEEEecC
Confidence            9998764

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=94.53  E-value=0.43  Score=32.31  Aligned_cols=97  Identities=13%  Similarity=0.059  Sum_probs=58.9

Q ss_pred             CCEEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCc-hhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCC
Q 029764           21 AKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNR-ETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEG   96 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~-~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~   96 (188)
                      .++|+=+|+  |..+..+++.+. .+.+|+.+|.++ +..+..++..     ...+.++.+|+.+  .+...     ...
T Consensus         3 ~~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~-----~~~~~~i~gd~~~~~~l~~a-----~i~   70 (153)
T 1id1_A            3 KDHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL-----GDNADVIPGDSNDSSVLKKA-----GID   70 (153)
T ss_dssp             CSCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH-----CTTCEEEESCTTSHHHHHHH-----TTT
T ss_pred             CCcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhh-----cCCCeEEEcCCCCHHHHHHc-----Chh
Confidence            356788776  777777666552 256899999974 5444444332     1246788898754  33332     136


Q ss_pred             ceeEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764           97 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        97 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      ..|+|++...............+.+.+...++.
T Consensus        71 ~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~ii~  103 (153)
T 1id1_A           71 RCRAILALSDNDADNAFVVLSAKDMSSDVKTVL  103 (153)
T ss_dssp             TCSEEEECSSCHHHHHHHHHHHHHHTSSSCEEE
T ss_pred             hCCEEEEecCChHHHHHHHHHHHHHCCCCEEEE
Confidence            789999875444434444455566666666665

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=94.48  E-value=0.25  Score=32.90  Aligned_cols=93  Identities=12%  Similarity=0.146  Sum_probs=54.7

Q ss_pred             CCEEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCc
Q 029764           21 AKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGS   97 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~   97 (188)
                      .++|+-+|+  |..+..+++.+. .+.+|+.+|.+++.++.+++    .+    +.++.+|..+  .+...     ....
T Consensus         6 ~~~v~I~G~--G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~----~~----~~~~~gd~~~~~~l~~~-----~~~~   70 (141)
T 3llv_A            6 RYEYIVIGS--EAAGVGLVRELTAAGKKVLAVDKSKEKIELLED----EG----FDAVIADPTDESFYRSL-----DLEG   70 (141)
T ss_dssp             CCSEEEECC--SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----TT----CEEEECCTTCHHHHHHS-----CCTT
T ss_pred             CCEEEEECC--CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH----CC----CcEEECCCCCHHHHHhC-----Cccc
Confidence            357888888  556665555442 25789999999987765553    12    5677888754  33332     1357


Q ss_pred             eeEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764           98 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        98 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      +|+|++..+............+.+. ...++.
T Consensus        71 ~d~vi~~~~~~~~n~~~~~~a~~~~-~~~iia  101 (141)
T 3llv_A           71 VSAVLITGSDDEFNLKILKALRSVS-DVYAIV  101 (141)
T ss_dssp             CSEEEECCSCHHHHHHHHHHHHHHC-CCCEEE
T ss_pred             CCEEEEecCCHHHHHHHHHHHHHhC-CceEEE
Confidence            8999886543222222333334444 444444

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=94.42  E-value=0.17  Score=39.92  Aligned_cols=98  Identities=19%  Similarity=0.162  Sum_probs=60.7

Q ss_pred             HcCCCEEEEEc--ccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764           18 LVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        18 ~~~~~~vLeiG--~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      ..++.+||-+|  .+.|..++.+|+..  +.+|++++ +++..+.++    ..|..   ..+..+..+....+.+    .
T Consensus       181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~--Ga~Vi~~~-~~~~~~~~~----~lGa~---~v~~~~~~~~~~~~~~----~  246 (375)
T 2vn8_A          181 NCTGKRVLILGASGGVGTFAIQVMKAW--DAHVTAVC-SQDASELVR----KLGAD---DVIDYKSGSVEEQLKS----L  246 (375)
T ss_dssp             TCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEE-CGGGHHHHH----HTTCS---EEEETTSSCHHHHHHT----S
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhC--CCEEEEEe-ChHHHHHHH----HcCCC---EEEECCchHHHHHHhh----c
Confidence            45677999998  45677888888875  56899888 666655553    34532   2222211122223321    2


Q ss_pred             CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      ..+|++|-.....  ...++..++.++++|.++.-.
T Consensus       247 ~g~D~vid~~g~~--~~~~~~~~~~l~~~G~iv~~g  280 (375)
T 2vn8_A          247 KPFDFILDNVGGS--TETWAPDFLKKWSGATYVTLV  280 (375)
T ss_dssp             CCBSEEEESSCTT--HHHHGGGGBCSSSCCEEEESC
T ss_pred             CCCCEEEECCCCh--hhhhHHHHHhhcCCcEEEEeC
Confidence            5799988553322  134567788999999998743

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=94.38  E-value=0.11  Score=39.90  Aligned_cols=89  Identities=13%  Similarity=0.125  Sum_probs=58.6

Q ss_pred             HHcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764           17 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        17 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      ...++.+||-+|+| .|..++.+|+..  +.+|++++ +++..+.+++    +|.   -.++ .|    ..++      .
T Consensus       139 ~~~~g~~VlV~GaG~vG~~a~qlak~~--Ga~Vi~~~-~~~~~~~~~~----lGa---~~v~-~d----~~~v------~  197 (315)
T 3goh_A          139 PLTKQREVLIVGFGAVNNLLTQMLNNA--GYVVDLVS-ASLSQALAAK----RGV---RHLY-RE----PSQV------T  197 (315)
T ss_dssp             CCCSCCEEEEECCSHHHHHHHHHHHHH--TCEEEEEC-SSCCHHHHHH----HTE---EEEE-SS----GGGC------C
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEE-ChhhHHHHHH----cCC---CEEE-cC----HHHh------C
Confidence            34567899999985 477888888875  56999999 8988887765    342   1222 23    1222      3


Q ss_pred             CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ..+|+||-.....    .+..+++.|+++|.++.-
T Consensus       198 ~g~Dvv~d~~g~~----~~~~~~~~l~~~G~~v~~  228 (315)
T 3goh_A          198 QKYFAIFDAVNSQ----NAAALVPSLKANGHIICI  228 (315)
T ss_dssp             SCEEEEECC-----------TTGGGEEEEEEEEEE
T ss_pred             CCccEEEECCCch----hHHHHHHHhcCCCEEEEE
Confidence            6899988432221    235678999999998875

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=94.33  E-value=0.13  Score=40.71  Aligned_cols=96  Identities=11%  Similarity=0.030  Sum_probs=67.1

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCC-cEEEEEcchHHHHHHHhhcccCCCce
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .+.+||.++.+.|..+++++..     .++++.-+--.....+.|++.+++.+ .+++...-.     .+      ...|
T Consensus        38 ~~~~~~~~~d~~gal~~~~~~~-----~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~~~-----~~------~~~~  101 (375)
T 4dcm_A           38 IRGPVLILNDAFGALSCALAEH-----KPYSIGDSYISELATRENLRLNGIDESSVKFLDSTA-----DY------PQQP  101 (375)
T ss_dssp             CCSCEEEECCSSSHHHHHTGGG-----CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEETTS-----CC------CSSC
T ss_pred             CCCCEEEECCCCCHHHHhhccC-----CceEEEhHHHHHHHHHHHHHHcCCCccceEeccccc-----cc------ccCC
Confidence            4468999999999999998753     33555444445567788898888864 366543321     11      4689


Q ss_pred             eEEEEeCCc--cchHHHHHHHHhccCcCeEEEEec
Q 029764           99 DYAFVDADK--DNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        99 D~i~id~~~--~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      |++++..++  ......+..+...|++|+.+++..
T Consensus       102 ~~v~~~lpk~~~~l~~~L~~l~~~l~~~~~i~~~g  136 (375)
T 4dcm_A          102 GVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGA  136 (375)
T ss_dssp             SEEEEECCSCHHHHHHHHHHHHTTCCTTSEEEEEE
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHhhCCCCCEEEEEe
Confidence            999987654  334556788889999999887754

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=94.29  E-value=0.16  Score=41.73  Aligned_cols=58  Identities=9%  Similarity=-0.082  Sum_probs=43.2

Q ss_pred             CEEEEEcccchHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029764           22 KKTIEIGVFTGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   85 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   85 (188)
                      .+++|+.||.|..+.-+...   +. .+.++|+++.+.+..+.|+..   .+...++.+|..++.
T Consensus        89 ~~viDLFaG~GGlslG~~~a---G~~~v~avE~d~~A~~ty~~N~~~---~p~~~~~~~DI~~i~  147 (482)
T 3me5_A           89 FRFIDLFAGIGGIRRGFESI---GGQCVFTSEWNKHAVRTYKANHYC---DPATHHFNEDIRDIT  147 (482)
T ss_dssp             EEEEEESCTTSHHHHHHHTT---TEEEEEEECCCHHHHHHHHHHSCC---CTTTCEEESCTHHHH
T ss_pred             ceEEEecCCccHHHHHHHHC---CCEEEEEEeCCHHHHHHHHHhccc---CCCcceeccchhhhh
Confidence            48999999999999888764   33 488899999888877776522   123456778887654

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=94.26  E-value=0.28  Score=38.60  Aligned_cols=99  Identities=14%  Similarity=0.146  Sum_probs=59.1

Q ss_pred             cCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           19 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        19 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      .++++|+-+|+| .|..++.++...  +.+|+.+|.+++..+.+++....     .+.....+..+....+       ..
T Consensus       165 l~~~~VlViGaGgvG~~aa~~a~~~--Ga~V~v~dr~~~r~~~~~~~~~~-----~~~~~~~~~~~~~~~~-------~~  230 (361)
T 1pjc_A          165 VKPGKVVILGGGVVGTEAAKMAVGL--GAQVQIFDINVERLSYLETLFGS-----RVELLYSNSAEIETAV-------AE  230 (361)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHHHHHH-------HT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHhhCc-----eeEeeeCCHHHHHHHH-------cC
Confidence            356899999985 344555566654  45999999999888777665432     2333333332332222       46


Q ss_pred             eeEEEEeCCccc--hHH-HHHHHHhccCcCeEEEEec
Q 029764           98 FDYAFVDADKDN--YCN-YHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        98 ~D~i~id~~~~~--~~~-~~~~~~~~L~~gG~lv~~~  131 (188)
                      +|+|+-......  ... +.+...+.+++||.++--.
T Consensus       231 ~DvVI~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~  267 (361)
T 1pjc_A          231 ADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVA  267 (361)
T ss_dssp             CSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred             CCEEEECCCcCCCCCCeecCHHHHhhCCCCCEEEEEe
Confidence            899975432211  001 1345668899999877543

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=94.11  E-value=0.23  Score=39.32  Aligned_cols=99  Identities=17%  Similarity=0.117  Sum_probs=57.6

Q ss_pred             cCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           19 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        19 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      .++++|+-+|+| .|..+...+..+  +.+|+++|.+++..+.+++.+   +.  .+.....+..+. .+..      ..
T Consensus       166 l~g~~V~ViG~G~iG~~~a~~a~~~--Ga~V~~~d~~~~~l~~~~~~~---g~--~~~~~~~~~~~l-~~~l------~~  231 (377)
T 2vhw_A          166 VEPADVVVIGAGTAGYNAARIANGM--GATVTVLDINIDKLRQLDAEF---CG--RIHTRYSSAYEL-EGAV------KR  231 (377)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHT---TT--SSEEEECCHHHH-HHHH------HH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHhc---CC--eeEeccCCHHHH-HHHH------cC
Confidence            467899999985 244444555554  569999999998776665433   32  122222222222 2221      46


Q ss_pred             eeEEEEeCCccc--h-HHHHHHHHhccCcCeEEEEec
Q 029764           98 FDYAFVDADKDN--Y-CNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        98 ~D~i~id~~~~~--~-~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      .|+|+.......  . .-+.+...+.+++||+++--.
T Consensus       232 aDvVi~~~~~p~~~t~~li~~~~l~~mk~g~~iV~va  268 (377)
T 2vhw_A          232 ADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA  268 (377)
T ss_dssp             CSEEEECCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred             CCEEEECCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence            899987532111  1 111355678899999887643

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.08  E-value=0.28  Score=34.33  Aligned_cols=94  Identities=11%  Similarity=0.099  Sum_probs=54.4

Q ss_pred             CEEEEEcccchHHHHHHHhhCC-C-CCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCc
Q 029764           22 KKTIEIGVFTGYSLLLTALTIP-E-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGS   97 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~-~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~   97 (188)
                      .+|+=+|+  |..+..+++.+. . +.+|+.+|.+++..+.+++    .+    +..+.+|..+  .+...    .....
T Consensus        40 ~~v~IiG~--G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~----~g----~~~~~gd~~~~~~l~~~----~~~~~  105 (183)
T 3c85_A           40 AQVLILGM--GRIGTGAYDELRARYGKISLGIEIREEAAQQHRS----EG----RNVISGDATDPDFWERI----LDTGH  105 (183)
T ss_dssp             CSEEEECC--SHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH----TT----CCEEECCTTCHHHHHTB----CSCCC
T ss_pred             CcEEEECC--CHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH----CC----CCEEEcCCCCHHHHHhc----cCCCC
Confidence            47888886  566555555442 2 4589999999987665543    23    4456676543  22221    01357


Q ss_pred             eeEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764           98 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        98 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      +|+|++...........-...+.+.++..++.
T Consensus       106 ad~vi~~~~~~~~~~~~~~~~~~~~~~~~ii~  137 (183)
T 3c85_A          106 VKLVLLAMPHHQGNQTALEQLQRRNYKGQIAA  137 (183)
T ss_dssp             CCEEEECCSSHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             CCEEEEeCCChHHHHHHHHHHHHHCCCCEEEE
Confidence            89999864332222222334456666777765

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=94.08  E-value=0.064  Score=41.30  Aligned_cols=92  Identities=11%  Similarity=0.113  Sum_probs=61.0

Q ss_pred             EEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029764           23 KTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  100 (188)
Q Consensus        23 ~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~  100 (188)
                      +||-+|+  +.|..++.+|+..  +.+|++++.+++..+.+++    .|..   ..+.....+....+     ..+.+|+
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~-----~~~~~d~  214 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKL--GYQVAAVSGRESTHGYLKS----LGAN---RILSRDEFAESRPL-----EKQLWAG  214 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCGGGHHHHHH----HTCS---EEEEGGGSSCCCSS-----CCCCEEE
T ss_pred             eEEEECCCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCC---EEEecCCHHHHHhh-----cCCCccE
Confidence            4999986  5788888999876  5699999999998887765    3432   12221111111111     2357998


Q ss_pred             EEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764          101 AFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus       101 i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      +|-...    .+.++.+++.|+++|.++.-..
T Consensus       215 v~d~~g----~~~~~~~~~~l~~~G~iv~~G~  242 (324)
T 3nx4_A          215 AIDTVG----DKVLAKVLAQMNYGGCVAACGL  242 (324)
T ss_dssp             EEESSC----HHHHHHHHHTEEEEEEEEECCC
T ss_pred             EEECCC----cHHHHHHHHHHhcCCEEEEEec
Confidence            764322    1367888999999999987543

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=94.08  E-value=0.12  Score=41.85  Aligned_cols=47  Identities=15%  Similarity=0.128  Sum_probs=37.9

Q ss_pred             CCEEEEEcccchHHHHHHHhhCC----CCCEEEEEeCCchhHHHHHHHHHh
Q 029764           21 AKKTIEIGVFTGYSLLLTALTIP----EDGQITAIDVNRETYEIGLPIIKK   67 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~~----~~~~v~~iD~~~~~~~~a~~~~~~   67 (188)
                      +.+|+|+|.|.|..+..+++.+.    ...+++.||+||...+.-++.+..
T Consensus       138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  188 (432)
T 4f3n_A          138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA  188 (432)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred             CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence            57999999999998888776542    124899999999998887877764

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=94.01  E-value=0.11  Score=40.06  Aligned_cols=66  Identities=11%  Similarity=-0.067  Sum_probs=49.0

Q ss_pred             EEEEEcccchHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029764           23 KTIEIGVFTGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  101 (188)
Q Consensus        23 ~vLeiG~g~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i  101 (188)
                      +|||+.||.|..+.-+-++   +. .+.++|+++.+.+..+.|+     +  -.++.+|..++...      +....|++
T Consensus         2 kvidLFsG~GG~~~G~~~a---G~~~v~a~e~d~~a~~ty~~N~-----~--~~~~~~DI~~i~~~------~~~~~D~l   65 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKA---GFRIICANEYDKSIWKTYESNH-----S--AKLIKGDISKISSD------EFPKCDGI   65 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHT---TCEEEEEEECCTTTHHHHHHHC-----C--SEEEESCGGGCCGG------GSCCCSEE
T ss_pred             eEEEeCcCccHHHHHHHHC---CCEEEEEEeCCHHHHHHHHHHC-----C--CCcccCChhhCCHh------hCCcccEE
Confidence            6999999999998887664   33 5678999999998888775     2  25678888765322      13678988


Q ss_pred             EEe
Q 029764          102 FVD  104 (188)
Q Consensus       102 ~id  104 (188)
                      +..
T Consensus        66 ~gg   68 (331)
T 3ubt_Y           66 IGG   68 (331)
T ss_dssp             ECC
T ss_pred             Eec
Confidence            754

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=93.88  E-value=0.17  Score=39.74  Aligned_cols=94  Identities=16%  Similarity=0.111  Sum_probs=59.0

Q ss_pred             CCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCc---hhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           21 AKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNR---ETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        21 ~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~---~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      +++||-+|+| .|..++.+++..  +.+|++++.++   +..+.+++    .|.. .+.  ..+..+.+.+.      .+
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~~~----~ga~-~v~--~~~~~~~~~~~------~~  245 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTY--GLEVWMANRREPTEVEQTVIEE----TKTN-YYN--SSNGYDKLKDS------VG  245 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHH--TCEEEEEESSCCCHHHHHHHHH----HTCE-EEE--CTTCSHHHHHH------HC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCccchHHHHHHHH----hCCc-eec--hHHHHHHHHHh------CC
Confidence            7899999984 245666677654  56999999988   66665553    3421 121  11222222221      25


Q ss_pred             ceeEEEEeCCccchHHHH-HHHHhccCcCeEEEEecc
Q 029764           97 SFDYAFVDADKDNYCNYH-ERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        97 ~~D~i~id~~~~~~~~~~-~~~~~~L~~gG~lv~~~~  132 (188)
                      .+|+||-.....   ..+ +.+.+.|+++|.++.-..
T Consensus       246 ~~d~vid~~g~~---~~~~~~~~~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          246 KFDVIIDATGAD---VNILGNVIPLLGRNGVLGLFGF  279 (366)
T ss_dssp             CEEEEEECCCCC---THHHHHHGGGEEEEEEEEECSC
T ss_pred             CCCEEEECCCCh---HHHHHHHHHHHhcCCEEEEEec
Confidence            799998654332   235 778899999999887543

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=93.84  E-value=0.8  Score=37.05  Aligned_cols=103  Identities=13%  Similarity=0.175  Sum_probs=60.0

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHH------------HHhcCCCCcEEEEEcchHHH
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPI------------IKKAGVDHKINFIESEALSV   84 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~------------~~~~~~~~~~~~~~~d~~~~   84 (188)
                      +..+-.+|--||+  |+.+..+|..+..+.+|+++|.+++.++..++.            +.. + ..++.+ ..|..+.
T Consensus        32 r~~~~mkIaVIGl--G~mG~~lA~~La~G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~-~-~~~l~~-ttd~~ea  106 (432)
T 3pid_A           32 RGSEFMKITISGT--GYVGLSNGVLIAQNHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAE-K-PLNFRA-TTDKHDA  106 (432)
T ss_dssp             ---CCCEEEEECC--SHHHHHHHHHHHTTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHH-S-CCCEEE-ESCHHHH
T ss_pred             cccCCCEEEEECc--CHHHHHHHHHHHcCCeEEEEecCHHHhhHHhccCCccccccHHHHHhh-c-cCCeEE-EcCHHHH
Confidence            3444457888887  555555554443367899999999988766542            111 0 112332 2333222


Q ss_pred             HHHHhhcccCCCceeEEEEeCCcc-----------chHHHHHHHHhccCcCeEEEEeccccC
Q 029764           85 LDQLLKYSENEGSFDYAFVDADKD-----------NYCNYHERLMKLLKVGGIAVYDNTLWG  135 (188)
Q Consensus        85 ~~~~~~~~~~~~~~D~i~id~~~~-----------~~~~~~~~~~~~L~~gG~lv~~~~~~~  135 (188)
                      +          ...|+||+..+..           ......+.+.+ |++|.++|.......
T Consensus       107 ~----------~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~p  157 (432)
T 3pid_A          107 Y----------RNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPV  157 (432)
T ss_dssp             H----------TTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCT
T ss_pred             H----------hCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCCh
Confidence            1          4578998864322           24556677778 999988887655543

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=93.81  E-value=0.32  Score=35.08  Aligned_cols=93  Identities=17%  Similarity=0.075  Sum_probs=58.2

Q ss_pred             EEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCcee
Q 029764           23 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSFD   99 (188)
Q Consensus        23 ~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~D   99 (188)
                      +|+=+|+  |..+..+++.+. .+..|+.+|.+++.++...+.   .    ...++.+|+.+  .+...     .....|
T Consensus         2 ~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~---~----~~~~i~gd~~~~~~l~~a-----~i~~ad   67 (218)
T 3l4b_C            2 KVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK---L----KATIIHGDGSHKEILRDA-----EVSKND   67 (218)
T ss_dssp             CEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH---S----SSEEEESCTTSHHHHHHH-----TCCTTC
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH---c----CCeEEEcCCCCHHHHHhc-----CcccCC
Confidence            4666675  777777776552 257899999999877654432   2    25678888765  33332     136789


Q ss_pred             EEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764          100 YAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus       100 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      ++++..........+....+.+.+...++.
T Consensus        68 ~vi~~~~~d~~n~~~~~~a~~~~~~~~iia   97 (218)
T 3l4b_C           68 VVVILTPRDEVNLFIAQLVMKDFGVKRVVS   97 (218)
T ss_dssp             EEEECCSCHHHHHHHHHHHHHTSCCCEEEE
T ss_pred             EEEEecCCcHHHHHHHHHHHHHcCCCeEEE
Confidence            999875544444444555555556666665

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=93.73  E-value=1  Score=32.75  Aligned_cols=95  Identities=11%  Similarity=0.047  Sum_probs=60.2

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCc
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGS   97 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~   97 (188)
                      ..++++=+|+  |..+..+++.+...+.|+.+|.+++.++.++     .    .+.++.+|+.+  .+...     ....
T Consensus         8 ~~~~viI~G~--G~~G~~la~~L~~~g~v~vid~~~~~~~~~~-----~----~~~~i~gd~~~~~~l~~a-----~i~~   71 (234)
T 2aef_A            8 KSRHVVICGW--SESTLECLRELRGSEVFVLAEDENVRKKVLR-----S----GANFVHGDPTRVSDLEKA-----NVRG   71 (234)
T ss_dssp             --CEEEEESC--CHHHHHHHHHSTTSEEEEEESCGGGHHHHHH-----T----TCEEEESCTTCHHHHHHT-----TCTT
T ss_pred             CCCEEEEECC--ChHHHHHHHHHHhCCeEEEEECCHHHHHHHh-----c----CCeEEEcCCCCHHHHHhc-----Ccch
Confidence            3457888887  7888888888753333899999988765443     1    36788998764  33322     1357


Q ss_pred             eeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           98 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        98 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      .|.|++..+............+.+.++..++..
T Consensus        72 ad~vi~~~~~d~~n~~~~~~a~~~~~~~~iia~  104 (234)
T 2aef_A           72 ARAVIVDLESDSETIHCILGIRKIDESVRIIAE  104 (234)
T ss_dssp             CSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred             hcEEEEcCCCcHHHHHHHHHHHHHCCCCeEEEE
Confidence            899998654433333444455667777666653

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=93.62  E-value=0.29  Score=38.32  Aligned_cols=101  Identities=13%  Similarity=0.091  Sum_probs=60.7

Q ss_pred             HHHcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc-c-hHHHHHHHhhcc
Q 029764           16 LRLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-E-ALSVLDQLLKYS   92 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d-~~~~~~~~~~~~   92 (188)
                      +...++.+||-+|+| .|..++.+|+... +.+|+++|.+++..+.+++    .|..   .++.. + ..+.+.++.   
T Consensus       182 ~~~~~g~~VlV~GaG~vG~~avqlak~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~v~~~~---  250 (359)
T 1h2b_A          182 RTLYPGAYVAIVGVGGLGHIAVQLLKVMT-PATVIALDVKEEKLKLAER----LGAD---HVVDARRDPVKQVMELT---  250 (359)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESSHHHHHHHHH----TTCS---EEEETTSCHHHHHHHHT---
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCC---EEEeccchHHHHHHHHh---
Confidence            345577899999975 3456677887752 5689999999888777653    3532   22221 1 223333331   


Q ss_pred             cCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           93 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        93 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                       ....+|+||-...... ...++.+.+.  ++|.++.-.
T Consensus       251 -~g~g~Dvvid~~G~~~-~~~~~~~~~~--~~G~~v~~g  285 (359)
T 1h2b_A          251 -RGRGVNVAMDFVGSQA-TVDYTPYLLG--RMGRLIIVG  285 (359)
T ss_dssp             -TTCCEEEEEESSCCHH-HHHHGGGGEE--EEEEEEECC
T ss_pred             -CCCCCcEEEECCCCch-HHHHHHHhhc--CCCEEEEEe
Confidence             1237999985432211 0145666666  899888754

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=93.55  E-value=0.22  Score=40.07  Aligned_cols=94  Identities=12%  Similarity=0.048  Sum_probs=61.3

Q ss_pred             CCEEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCc
Q 029764           21 AKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGS   97 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~   97 (188)
                      ..+|+=+|+  |..+..+++.+. .+..|+.||.+++.++.+++    .+    +.++.+|+.+  .+...     ....
T Consensus         4 ~~~viIiG~--Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~----~g----~~vi~GDat~~~~L~~a-----gi~~   68 (413)
T 3l9w_A            4 GMRVIIAGF--GRFGQITGRLLLSSGVKMVVLDHDPDHIETLRK----FG----MKVFYGDATRMDLLESA-----GAAK   68 (413)
T ss_dssp             CCSEEEECC--SHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH----TT----CCCEESCTTCHHHHHHT-----TTTT
T ss_pred             CCeEEEECC--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh----CC----CeEEEcCCCCHHHHHhc-----CCCc
Confidence            346888887  555555555442 25789999999998887664    23    4578888765  34332     2367


Q ss_pred             eeEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764           98 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        98 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      .|+|++..+.......+-...+.+.|+..+++
T Consensus        69 A~~viv~~~~~~~n~~i~~~ar~~~p~~~Iia  100 (413)
T 3l9w_A           69 AEVLINAIDDPQTNLQLTEMVKEHFPHLQIIA  100 (413)
T ss_dssp             CSEEEECCSSHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             cCEEEECCCChHHHHHHHHHHHHhCCCCeEEE
Confidence            89998876544434444555677778876665

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=93.55  E-value=0.52  Score=37.13  Aligned_cols=99  Identities=16%  Similarity=0.176  Sum_probs=56.7

Q ss_pred             cCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           19 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        19 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      .++++|+-+|+| .|..+...+...  +.+|+.+|.+++..+.+++.+   +.  .+.....+..+. .+..      ..
T Consensus       164 l~~~~V~ViGaG~iG~~~a~~l~~~--Ga~V~~~d~~~~~~~~~~~~~---g~--~~~~~~~~~~~l-~~~~------~~  229 (369)
T 2eez_A          164 VAPASVVILGGGTVGTNAAKIALGM--GAQVTILDVNHKRLQYLDDVF---GG--RVITLTATEANI-KKSV------QH  229 (369)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHT---TT--SEEEEECCHHHH-HHHH------HH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHhc---Cc--eEEEecCCHHHH-HHHH------hC
Confidence            456899999984 233444444443  569999999988766555432   32  233333333222 2221      46


Q ss_pred             eeEEEEeCCccc--hHH-HHHHHHhccCcCeEEEEec
Q 029764           98 FDYAFVDADKDN--YCN-YHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        98 ~D~i~id~~~~~--~~~-~~~~~~~~L~~gG~lv~~~  131 (188)
                      .|+|+.......  ... +.+.+.+.+++||.++.-.
T Consensus       230 ~DvVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~  266 (369)
T 2eez_A          230 ADLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVA  266 (369)
T ss_dssp             CSEEEECCC-------CCSCHHHHTTSCTTCEEEECC
T ss_pred             CCEEEECCCCCccccchhHHHHHHHhhcCCCEEEEEe
Confidence            899986543221  111 2456678899999877644

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=93.43  E-value=0.81  Score=33.95  Aligned_cols=80  Identities=15%  Similarity=0.171  Sum_probs=46.9

Q ss_pred             CCCEEEEEcccc-hHH-HHHHHhhCCCCCEEEEEeCCc-------------------hhHHHHHHHHHhcCCCCcEEEEE
Q 029764           20 NAKKTIEIGVFT-GYS-LLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIE   78 (188)
Q Consensus        20 ~~~~vLeiG~g~-G~~-~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~   78 (188)
                      +..+|+-+|+|. |.. +..|+.. . -++++.+|.+.                   ...+.+.+.+...+-.-+++.+.
T Consensus        30 ~~~~VlVvG~Gg~G~~va~~La~~-G-v~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~  107 (249)
T 1jw9_B           30 KDSRVLIVGLGGLGCAASQYLASA-G-VGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVN  107 (249)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHH-T-CSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred             hCCeEEEEeeCHHHHHHHHHHHHc-C-CCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEe
Confidence            456899999962 332 2223333 1 36999999987                   66677777776654223455555


Q ss_pred             cchHH-HHHHHhhcccCCCceeEEEEeCCc
Q 029764           79 SEALS-VLDQLLKYSENEGSFDYAFVDADK  107 (188)
Q Consensus        79 ~d~~~-~~~~~~~~~~~~~~~D~i~id~~~  107 (188)
                      .+..+ .+.++.      ..+|+|+...+.
T Consensus       108 ~~~~~~~~~~~~------~~~DvVi~~~d~  131 (249)
T 1jw9_B          108 ALLDDAELAALI------AEHDLVLDCTDN  131 (249)
T ss_dssp             SCCCHHHHHHHH------HTSSEEEECCSS
T ss_pred             ccCCHhHHHHHH------hCCCEEEEeCCC
Confidence            43322 223332      579999876543

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=93.39  E-value=0.58  Score=35.86  Aligned_cols=95  Identities=11%  Similarity=-0.002  Sum_probs=60.3

Q ss_pred             HHHcCCCEEEEEc--ccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH-HHHHHhhcc
Q 029764           16 LRLVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS-VLDQLLKYS   92 (188)
Q Consensus        16 ~~~~~~~~vLeiG--~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~   92 (188)
                      +...++.+||-+|  .+.|..++.+|+..  +.++++++ +++..+.++    +.|..   ..+.....+ ....     
T Consensus       148 ~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~--Ga~vi~~~-~~~~~~~~~----~lGa~---~~i~~~~~~~~~~~-----  212 (321)
T 3tqh_A          148 AEVKQGDVVLIHAGAGGVGHLAIQLAKQK--GTTVITTA-SKRNHAFLK----ALGAE---QCINYHEEDFLLAI-----  212 (321)
T ss_dssp             TTCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEE-CHHHHHHHH----HHTCS---EEEETTTSCHHHHC-----
T ss_pred             cCCCCCCEEEEEcCCcHHHHHHHHHHHHc--CCEEEEEe-ccchHHHHH----HcCCC---EEEeCCCcchhhhh-----
Confidence            4566778999986  44688888899875  56888887 444444444    34543   233322222 2222     


Q ss_pred             cCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           93 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        93 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                        ...+|+||-....    ..+..+++.|+++|.++.-.
T Consensus       213 --~~g~D~v~d~~g~----~~~~~~~~~l~~~G~iv~~g  245 (321)
T 3tqh_A          213 --STPVDAVIDLVGG----DVGIQSIDCLKETGCIVSVP  245 (321)
T ss_dssp             --CSCEEEEEESSCH----HHHHHHGGGEEEEEEEEECC
T ss_pred             --ccCCCEEEECCCc----HHHHHHHHhccCCCEEEEeC
Confidence              3679988854322    22377889999999998753

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=93.26  E-value=0.53  Score=31.95  Aligned_cols=100  Identities=12%  Similarity=0.027  Sum_probs=54.9

Q ss_pred             HHHcCCCEEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcc
Q 029764           16 LRLVNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYS   92 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~   92 (188)
                      ....+..+|+-+|+  |..+..++..+. .+.+|+.+|.+++.++.+++   ..    ...++.+|..+  .+...    
T Consensus        14 ~~~~~~~~v~IiG~--G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~---~~----g~~~~~~d~~~~~~l~~~----   80 (155)
T 2g1u_A           14 SKKQKSKYIVIFGC--GRLGSLIANLASSSGHSVVVVDKNEYAFHRLNS---EF----SGFTVVGDAAEFETLKEC----   80 (155)
T ss_dssp             ---CCCCEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT---TC----CSEEEESCTTSHHHHHTT----
T ss_pred             hcccCCCcEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh---cC----CCcEEEecCCCHHHHHHc----
Confidence            34456678999987  555555444432 25689999999887654331   11    23456666533  22211    


Q ss_pred             cCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764           93 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        93 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                       ....+|+|++.............+.+.+.+...++.
T Consensus        81 -~~~~ad~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~  116 (155)
T 2g1u_A           81 -GMEKADMVFAFTNDDSTNFFISMNARYMFNVENVIA  116 (155)
T ss_dssp             -TGGGCSEEEECSSCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred             -CcccCCEEEEEeCCcHHHHHHHHHHHHHCCCCeEEE
Confidence             124689999875544333333444454455555555

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=92.96  E-value=0.34  Score=38.60  Aligned_cols=44  Identities=14%  Similarity=0.166  Sum_probs=34.1

Q ss_pred             EEEEEcccchHHHHHHHhhCC------CCCEEEEEeCCchhHHHHHHHHH
Q 029764           23 KTIEIGVFTGYSLLLTALTIP------EDGQITAIDVNRETYEIGLPIIK   66 (188)
Q Consensus        23 ~vLeiG~g~G~~~~~la~~~~------~~~~v~~iD~~~~~~~~a~~~~~   66 (188)
                      .|+|+|.|.|..+..+++.+.      ...+++.||+||...+.-++.+.
T Consensus        83 ~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~  132 (387)
T 1zkd_A           83 RLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA  132 (387)
T ss_dssp             EEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred             EEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhc
Confidence            799999999999888876542      23589999999988775555443

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=92.76  E-value=2.3  Score=32.07  Aligned_cols=104  Identities=18%  Similarity=0.271  Sum_probs=62.9

Q ss_pred             HHcCCCEEEEEcccchH---HHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH------HHHH
Q 029764           17 RLVNAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQ   87 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~   87 (188)
                      ...++|.+|-.|.+.|-   .+..|++   .+.+|+.+|.+++.++.+.+.+   +  .+...+..|..+      .+..
T Consensus        25 ~rL~gKvalVTGas~GIG~aiA~~la~---~Ga~V~i~~r~~~~l~~~~~~~---g--~~~~~~~~Dv~~~~~v~~~~~~   96 (273)
T 4fgs_A           25 QRLNAKIAVITGATSGIGLAAAKRFVA---EGARVFITGRRKDVLDAAIAEI---G--GGAVGIQADSANLAELDRLYEK   96 (273)
T ss_dssp             CTTTTCEEEEESCSSHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHH---C--TTCEEEECCTTCHHHHHHHHHH
T ss_pred             chhCCCEEEEeCcCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHc---C--CCeEEEEecCCCHHHHHHHHHH
Confidence            34578899999987763   3333444   3789999999988776655443   3  346677777542      2222


Q ss_pred             HhhcccCCCceeEEEEeCCc-----------cch-----------HHHHHHHHhccCcCeEEEEec
Q 029764           88 LLKYSENEGSFDYAFVDADK-----------DNY-----------CNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        88 ~~~~~~~~~~~D~i~id~~~-----------~~~-----------~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      ..+.   .+..|+++-.+..           +..           ....+.+.+.++++|.+|.-.
T Consensus        97 ~~~~---~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInis  159 (273)
T 4fgs_A           97 VKAE---AGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTG  159 (273)
T ss_dssp             HHHH---HSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEC
T ss_pred             HHHH---cCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence            2222   4789999866311           111           112344457888888876643

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=92.66  E-value=3  Score=32.73  Aligned_cols=92  Identities=11%  Similarity=0.016  Sum_probs=58.5

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      +..+|.=||+  |..+..+|..+. .+.+|++.|.+++..+.+.+    .+.    . ...+..+.+..       ....
T Consensus        21 ~~mkIgiIGl--G~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~----~g~----~-~~~s~~e~~~~-------a~~~   82 (358)
T 4e21_A           21 QSMQIGMIGL--GRMGADMVRRLRKGGHECVVYDLNVNAVQALER----EGI----A-GARSIEEFCAK-------LVKP   82 (358)
T ss_dssp             -CCEEEEECC--SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHT----TTC----B-CCSSHHHHHHH-------SCSS
T ss_pred             cCCEEEEECc--hHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH----CCC----E-EeCCHHHHHhc-------CCCC
Confidence            4568889987  444444444332 25689999999887665443    232    1 12344444433       2456


Q ss_pred             eEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764           99 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      |+||+..........++.+.+.|++|.+++-
T Consensus        83 DvVi~~vp~~~v~~vl~~l~~~l~~g~iiId  113 (358)
T 4e21_A           83 RVVWLMVPAAVVDSMLQRMTPLLAANDIVID  113 (358)
T ss_dssp             CEEEECSCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             CEEEEeCCHHHHHHHHHHHHhhCCCCCEEEe
Confidence            9999986655677788888889988876664

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=92.36  E-value=1.2  Score=28.06  Aligned_cols=81  Identities=14%  Similarity=0.014  Sum_probs=48.0

Q ss_pred             CCEEEEEcccchHHHHHHHhhCC-CC-CEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCC
Q 029764           21 AKKTIEIGVFTGYSLLLTALTIP-ED-GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEG   96 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~~-~~-~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~   96 (188)
                      .++|+-+|+  |..+..++..+. .+ .+|+.+|.+++..+.+.    .    ..+.+...|..+  .+...      ..
T Consensus         5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~----~~~~~~~~d~~~~~~~~~~------~~   68 (118)
T 3ic5_A            5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN----R----MGVATKQVDAKDEAGLAKA------LG   68 (118)
T ss_dssp             CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----T----TTCEEEECCTTCHHHHHHH------TT
T ss_pred             cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----h----CCCcEEEecCCCHHHHHHH------Hc
Confidence            357899988  555555554432 24 68999999987665443    1    235666666543  23333      35


Q ss_pred             ceeEEEEeCCccchHHHHHHH
Q 029764           97 SFDYAFVDADKDNYCNYHERL  117 (188)
Q Consensus        97 ~~D~i~id~~~~~~~~~~~~~  117 (188)
                      .+|+|+...+......+.+.+
T Consensus        69 ~~d~vi~~~~~~~~~~~~~~~   89 (118)
T 3ic5_A           69 GFDAVISAAPFFLTPIIAKAA   89 (118)
T ss_dssp             TCSEEEECSCGGGHHHHHHHH
T ss_pred             CCCEEEECCCchhhHHHHHHH
Confidence            789999876544433443333

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=92.34  E-value=1.1  Score=34.54  Aligned_cols=93  Identities=13%  Similarity=0.065  Sum_probs=60.4

Q ss_pred             CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcccCCCce
Q 029764           21 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSF   98 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~   98 (188)
                      .++++=+|+  |..+..+++.+...+.++.+|.+++.++ +++        ..+.++.+|+.+.  +.+.     .-...
T Consensus       115 ~~~viI~G~--G~~g~~l~~~L~~~g~v~vid~~~~~~~-~~~--------~~~~~i~gd~~~~~~L~~a-----~i~~a  178 (336)
T 1lnq_A          115 SRHVVICGW--SESTLECLRELRGSEVFVLAEDENVRKK-VLR--------SGANFVHGDPTRVSDLEKA-----NVRGA  178 (336)
T ss_dssp             -CEEEEESC--CHHHHHHHTTGGGSCEEEEESCGGGHHH-HHH--------TTCEEEESCTTSHHHHHHT-----CSTTE
T ss_pred             cCCEEEECC--cHHHHHHHHHHHhCCcEEEEeCChhhhh-HHh--------CCcEEEEeCCCCHHHHHhc-----Chhhc
Confidence            457888876  7888888887743333999999998877 543        1367899998653  3332     24679


Q ss_pred             eEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764           99 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      |.+++..+.+...-..-...+.+.|...++.
T Consensus       179 ~~vi~~~~~d~~n~~~~~~ar~~~~~~~iia  209 (336)
T 1lnq_A          179 RAVIVDLESDSETIHCILGIRKIDESVRIIA  209 (336)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHTTCTTSEEEE
T ss_pred             cEEEEcCCccHHHHHHHHHHHHHCCCCeEEE
Confidence            9998865443322333444567777766665

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=92.30  E-value=1.7  Score=35.23  Aligned_cols=101  Identities=14%  Similarity=0.190  Sum_probs=59.6

Q ss_pred             CCEEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhc---C---------CCCcEEEEEcchHHHHHH
Q 029764           21 AKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKA---G---------VDHKINFIESEALSVLDQ   87 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~---~---------~~~~~~~~~~d~~~~~~~   87 (188)
                      ..++-=||+  |+.+..+|..+. .+.+|+++|.+++.++..++.....   +         ...++.+ ..|..+.+  
T Consensus         8 ~~~~~vIGl--G~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~-ttd~~ea~--   82 (446)
T 4a7p_A            8 SVRIAMIGT--GYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSF-TTDLAEGV--   82 (446)
T ss_dssp             CCEEEEECC--SHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEE-ESCHHHHH--
T ss_pred             ceEEEEEcC--CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEE-ECCHHHHH--
Confidence            346777777  555555554442 2568999999999887665420000   0         0122333 23332221  


Q ss_pred             HhhcccCCCceeEEEEeCCcc-----------chHHHHHHHHhccCcCeEEEEecccc
Q 029764           88 LLKYSENEGSFDYAFVDADKD-----------NYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        88 ~~~~~~~~~~~D~i~id~~~~-----------~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                              ...|+||+.-+.+           ......+.+.+.|++|.++|......
T Consensus        83 --------~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~  132 (446)
T 4a7p_A           83 --------KDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTVP  132 (446)
T ss_dssp             --------TTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCCC
T ss_pred             --------hcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCCC
Confidence                    4578998873221           25667788888999998888765543

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=92.27  E-value=0.29  Score=38.68  Aligned_cols=77  Identities=16%  Similarity=0.086  Sum_probs=47.1

Q ss_pred             cCCCEEEEEccc---chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764           19 VNAKKTIEIGVF---TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        19 ~~~~~vLeiG~g---~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      .++.+||-+|.|   .|..++.+|+..  +.+|++++.+++..+.+++    .|...-+.....+..+.+.+...    .
T Consensus       169 ~~g~~vlV~gag~G~vG~~a~q~a~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~~~~~~~~~~~~~v~~~t~----~  238 (379)
T 3iup_A          169 LEGHSALVHTAAASNLGQMLNQICLKD--GIKLVNIVRKQEQADLLKA----QGAVHVCNAASPTFMQDLTEALV----S  238 (379)
T ss_dssp             HTTCSCEEESSTTSHHHHHHHHHHHHH--TCCEEEEESSHHHHHHHHH----TTCSCEEETTSTTHHHHHHHHHH----H
T ss_pred             cCCCEEEEECCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHh----CCCcEEEeCCChHHHHHHHHHhc----C
Confidence            677889988433   566777788765  5689999999988777764    45432222222333333333321    2


Q ss_pred             CceeEEEEeC
Q 029764           96 GSFDYAFVDA  105 (188)
Q Consensus        96 ~~~D~i~id~  105 (188)
                      ..+|++|-..
T Consensus       239 ~g~d~v~d~~  248 (379)
T 3iup_A          239 TGATIAFDAT  248 (379)
T ss_dssp             HCCCEEEESC
T ss_pred             CCceEEEECC
Confidence            4699888543

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=92.19  E-value=0.44  Score=36.72  Aligned_cols=89  Identities=15%  Similarity=0.152  Sum_probs=55.7

Q ss_pred             CEEEEEcccchHHHHHHHhhCC-CCC--EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           22 KKTIEIGVFTGYSLLLTALTIP-EDG--QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~-~~~--~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .+|.=||+|  ..+..++..+. .+.  +|+++|.+++.++.+++    .|...  . ...+..+.   .      ....
T Consensus        34 ~kI~IIG~G--~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~----~G~~~--~-~~~~~~~~---~------~~~a   95 (314)
T 3ggo_A           34 QNVLIVGVG--FMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGIID--E-GTTSIAKV---E------DFSP   95 (314)
T ss_dssp             SEEEEESCS--HHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTSCS--E-EESCTTGG---G------GGCC
T ss_pred             CEEEEEeeC--HHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH----CCCcc--h-hcCCHHHH---h------hccC
Confidence            579999975  43333333321 133  89999999987766543    34321  1 12332220   1      1468


Q ss_pred             eEEEEeCCccchHHHHHHHHhccCcCeEEE
Q 029764           99 DYAFVDADKDNYCNYHERLMKLLKVGGIAV  128 (188)
Q Consensus        99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv  128 (188)
                      |+|++........+.++.+.+.++++.+++
T Consensus        96 DvVilavp~~~~~~vl~~l~~~l~~~~iv~  125 (314)
T 3ggo_A           96 DFVMLSSPVRTFREIAKKLSYILSEDATVT  125 (314)
T ss_dssp             SEEEECSCGGGHHHHHHHHHHHSCTTCEEE
T ss_pred             CEEEEeCCHHHHHHHHHHHhhccCCCcEEE
Confidence            999998777777788888888898887654

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=92.08  E-value=0.43  Score=37.96  Aligned_cols=103  Identities=20%  Similarity=0.194  Sum_probs=61.5

Q ss_pred             CCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE---------cch--------
Q 029764           20 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE---------SEA--------   81 (188)
Q Consensus        20 ~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~---------~d~--------   81 (188)
                      ++.+|+-+|+| .|..+..++..+  +.+|+.+|.+++..+.+++    .|.    ++..         +..        
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~l--Ga~V~v~D~~~~~l~~~~~----lGa----~~~~l~~~~~~~~gya~~~~~~~~  252 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRL--GAKTTGYDVRPEVAEQVRS----VGA----QWLDLGIDAAGEGGYARELSEAER  252 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHH--TCEEEEECSSGGGHHHHHH----TTC----EECCCC-------------CHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCC----eEEeccccccccccchhhhhHHHH
Confidence            67899999997 455666666665  5699999999988776655    231    1111         000        


Q ss_pred             ---HHHHHHHhhcccCCCceeEEEEeCC-c--cchHHHHHHHHhccCcCeEEEEeccccCccc
Q 029764           82 ---LSVLDQLLKYSENEGSFDYAFVDAD-K--DNYCNYHERLMKLLKVGGIAVYDNTLWGGTV  138 (188)
Q Consensus        82 ---~~~~~~~~~~~~~~~~~D~i~id~~-~--~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~  138 (188)
                         .+.+.+.      -...|+|+.... +  ....-+-+.+.+.+|||+++|=-.+-..|..
T Consensus       253 ~~~~~~l~e~------l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~  309 (381)
T 3p2y_A          253 AQQQQALEDA------ITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAGETGGNC  309 (381)
T ss_dssp             HHHHHHHHHH------HTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCSB
T ss_pred             hhhHHHHHHH------HhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeCCCCCcc
Confidence               1122222      267999986521 1  1111123677788999888776544444443

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=92.02  E-value=0.065  Score=41.41  Aligned_cols=94  Identities=17%  Similarity=0.103  Sum_probs=59.5

Q ss_pred             EEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029764           23 KTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  100 (188)
Q Consensus        23 ~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~  100 (188)
                      +||-+|+  |.|..++.+|+..  +.++++++.+++..+.+++    .|..   ..+.  ..+........ .....+|+
T Consensus       153 ~VlV~Ga~G~vG~~~~q~a~~~--Ga~vi~~~~~~~~~~~~~~----lGa~---~v~~--~~~~~~~~~~~-~~~~~~d~  220 (330)
T 1tt7_A          153 SVLVTGATGGVGGIAVSMLNKR--GYDVVASTGNREAADYLKQ----LGAS---EVIS--REDVYDGTLKA-LSKQQWQG  220 (330)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHH--TCCEEEEESSSSTHHHHHH----HTCS---EEEE--HHHHCSSCCCS-SCCCCEEE
T ss_pred             eEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCc---EEEE--CCCchHHHHHH-hhcCCccE
Confidence            7999996  5677888888875  5689999999888877765    3432   1222  11110000000 01246998


Q ss_pred             EEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764          101 AFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus       101 i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      +|-....    ..++.+++.++++|.++.-..
T Consensus       221 vid~~g~----~~~~~~~~~l~~~G~iv~~G~  248 (330)
T 1tt7_A          221 AVDPVGG----KQLASLLSKIQYGGSVAVSGL  248 (330)
T ss_dssp             EEESCCT----HHHHHHHTTEEEEEEEEECCC
T ss_pred             EEECCcH----HHHHHHHHhhcCCCEEEEEec
Confidence            8754332    357888899999999987543

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=92.02  E-value=0.29  Score=47.95  Aligned_cols=104  Identities=12%  Similarity=0.018  Sum_probs=66.9

Q ss_pred             HHcCCCEEEEEc--ccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           17 RLVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        17 ~~~~~~~vLeiG--~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      +..++.+||-.|  .|.|..++.+|+..  +.+|++++.+++..+.+++.+...+...   ++.....++...+.+. -.
T Consensus      1664 ~l~~Ge~VLI~gaaGgVG~aAiqlAk~~--Ga~Viat~~s~~k~~~l~~~~~~lga~~---v~~~~~~~~~~~i~~~-t~ 1737 (2512)
T 2vz8_A         1664 RMQPGESVLIHSGSGGVGQAAIAIALSR--GCRVFTTVGSAEKRAYLQARFPQLDETC---FANSRDTSFEQHVLRH-TA 1737 (2512)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTCCSTT---EEESSSSHHHHHHHHT-TT
T ss_pred             cCCCCCEEEEEeCChHHHHHHHHHHHHc--CCEEEEEeCChhhhHHHHhhcCCCCceE---EecCCCHHHHHHHHHh-cC
Confidence            356778999986  46778888899875  6799999998887777776543334321   2222222222222111 01


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ..++|+|+-...    .+.++..++.|+++|.++.-
T Consensus      1738 g~GvDvVld~~g----~~~l~~~l~~L~~~Gr~V~i 1769 (2512)
T 2vz8_A         1738 GKGVDLVLNSLA----EEKLQASVRCLAQHGRFLEI 1769 (2512)
T ss_dssp             SCCEEEEEECCC----HHHHHHHHTTEEEEEEEEEC
T ss_pred             CCCceEEEECCC----chHHHHHHHhcCCCcEEEEe
Confidence            347999885332    45688899999999998864

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=91.99  E-value=2.3  Score=31.66  Aligned_cols=82  Identities=15%  Similarity=0.209  Sum_probs=54.5

Q ss_pred             cCCCEEEEEcccchH---HHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcc-
Q 029764           19 VNAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYS-   92 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~-   92 (188)
                      .++|.+|-.|.+.|-   .+..|++   .+.+|+.+|.+++.++.+.+.++..+  .++.++..|..+  ....+.+.. 
T Consensus         5 L~gKvalVTGas~GIG~aiA~~la~---~Ga~Vv~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~   79 (254)
T 4fn4_A            5 LKNKVVIVTGAGSGIGRAIAKKFAL---NDSIVVAVELLEDRLNQIVQELRGMG--KEVLGVKADVSKKKDVEEFVRRTF   79 (254)
T ss_dssp             GTTCEEEEETTTSHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHH
Confidence            467889999977663   3333444   37899999999999988888887766  457788887543  112211110 


Q ss_pred             cCCCceeEEEEeC
Q 029764           93 ENEGSFDYAFVDA  105 (188)
Q Consensus        93 ~~~~~~D~i~id~  105 (188)
                      ...+..|+++-.+
T Consensus        80 ~~~G~iDiLVNNA   92 (254)
T 4fn4_A           80 ETYSRIDVLCNNA   92 (254)
T ss_dssp             HHHSCCCEEEECC
T ss_pred             HHcCCCCEEEECC
Confidence            1247899988653

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=91.81  E-value=0.63  Score=36.88  Aligned_cols=42  Identities=24%  Similarity=0.234  Sum_probs=31.2

Q ss_pred             CCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHH
Q 029764           20 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLP   63 (188)
Q Consensus        20 ~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~   63 (188)
                      ++.+|+-+|+| .|..++.+++.+  +.+|+.+|.+++..+.+++
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~--Ga~V~~~d~~~~~~~~~~~  213 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRL--GAVVMATDVRAATKEQVES  213 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCSTTHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence            67899999987 345556666665  4689999999887766544

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=91.70  E-value=3.1  Score=30.94  Aligned_cols=110  Identities=18%  Similarity=0.194  Sum_probs=61.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCC------------chhHHHHHHHHHhcCCCCcEEEEEcchHHH-
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVN------------RETYEIGLPIIKKAGVDHKINFIESEALSV-   84 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~------------~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-   84 (188)
                      ..++++|-.|++.| .+..+++.+ ..+.+|+.+|.+            .+.++.+.+.+...+  .++.++..|..+. 
T Consensus         8 l~gk~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~   84 (287)
T 3pxx_A            8 VQDKVVLVTGGARG-QGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--RKAYTAEVDVRDRA   84 (287)
T ss_dssp             TTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--SCEEEEECCTTCHH
T ss_pred             cCCCEEEEeCCCCh-HHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC--CceEEEEccCCCHH
Confidence            35678998887655 333333333 126799999986            555555555555544  4688888876431 


Q ss_pred             -HHHHhhcc-cCCCceeEEEEeCCc---------cch-----------HHHHHHHHhccCcCeEEEEec
Q 029764           85 -LDQLLKYS-ENEGSFDYAFVDADK---------DNY-----------CNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        85 -~~~~~~~~-~~~~~~D~i~id~~~---------~~~-----------~~~~~~~~~~L~~gG~lv~~~  131 (188)
                       +..+.+.. ...+.+|+++..+..         +..           ....+.+.+.++++|.+|.-.
T Consensus        85 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  153 (287)
T 3pxx_A           85 AVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTG  153 (287)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEec
Confidence             12211110 013579999876421         111           123345567778888777643

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=91.60  E-value=0.22  Score=36.81  Aligned_cols=87  Identities=17%  Similarity=0.137  Sum_probs=52.3

Q ss_pred             CEEEEEcccchHHHHHHHhhCCC-CC----EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           22 KKTIEIGVFTGYSLLLTALTIPE-DG----QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~~-~~----~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      .+|.=||+|  ..+..++..+.. +.    +|+..|.+++..+.+.+.+   +    +.. ..+..+.+          .
T Consensus         3 ~~i~iIG~G--~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~---g----~~~-~~~~~e~~----------~   62 (247)
T 3gt0_A            3 KQIGFIGCG--NMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKY---G----LTT-TTDNNEVA----------K   62 (247)
T ss_dssp             CCEEEECCS--HHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHH---C----CEE-CSCHHHHH----------H
T ss_pred             CeEEEECcc--HHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHh---C----CEE-eCChHHHH----------H
Confidence            357778875  444444433311 32    8999999998776665433   3    222 23333332          3


Q ss_pred             ceeEEEEeCCccchHHHHHHHHhccCcCeEEE
Q 029764           97 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAV  128 (188)
Q Consensus        97 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv  128 (188)
                      ..|+||+...+....+.++.+.+.++++..++
T Consensus        63 ~aDvVilav~~~~~~~v~~~l~~~l~~~~~vv   94 (247)
T 3gt0_A           63 NADILILSIKPDLYASIINEIKEIIKNDAIIV   94 (247)
T ss_dssp             HCSEEEECSCTTTHHHHC---CCSSCTTCEEE
T ss_pred             hCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEE
Confidence            47999998766677778888888888887666

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=91.56  E-value=2  Score=33.62  Aligned_cols=96  Identities=6%  Similarity=-0.033  Sum_probs=59.9

Q ss_pred             CCEEEEEcccchHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHh------cCCCCcEEEEEcchHHHHHHHhhccc
Q 029764           21 AKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKK------AGVDHKINFIESEALSVLDQLLKYSE   93 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~------~~~~~~~~~~~~d~~~~~~~~~~~~~   93 (188)
                      ..+|.=||+|  ..+..+|..+.. +.+|+..+.+++.++..++.-..      ..++.++.+ ..|..+.   +     
T Consensus        29 ~mkI~VIGaG--~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~-t~d~~ea---~-----   97 (356)
T 3k96_A           29 KHPIAILGAG--SWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKA-YCDLKAS---L-----   97 (356)
T ss_dssp             CSCEEEECCS--HHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEE-ESCHHHH---H-----
T ss_pred             CCeEEEECcc--HHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEE-ECCHHHH---H-----
Confidence            3478889885  444444443321 45799999998887766654211      111223333 2333222   1     


Q ss_pred             CCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764           94 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        94 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                        ...|+|++.-......+.++.+.+.++++..++.
T Consensus        98 --~~aDvVilaVp~~~~~~vl~~i~~~l~~~~ivvs  131 (356)
T 3k96_A           98 --EGVTDILIVVPSFAFHEVITRMKPLIDAKTRIAW  131 (356)
T ss_dssp             --TTCCEEEECCCHHHHHHHHHHHGGGCCTTCEEEE
T ss_pred             --hcCCEEEECCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence              5689999987666777888888889998876654

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=91.49  E-value=3.2  Score=30.61  Aligned_cols=79  Identities=9%  Similarity=0.111  Sum_probs=52.8

Q ss_pred             cCCCEEEEEcc----cchH-HHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH------HHHH
Q 029764           19 VNAKKTIEIGV----FTGY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQ   87 (188)
Q Consensus        19 ~~~~~vLeiG~----g~G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~   87 (188)
                      .++|++|-.|.    |.|. .+..|++.   +.+|+.++.+++..+.+.+.++..+- .++.++..|..+      .+..
T Consensus         4 l~gK~alVTGaa~~~GIG~aiA~~la~~---Ga~Vvi~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~   79 (256)
T 4fs3_A            4 LENKTYVIMGIANKRSIAFGVAKVLDQL---GAKLVFTYRKERSRKELEKLLEQLNQ-PEAHLYQIDVQSDEEVINGFEQ   79 (256)
T ss_dssp             CTTCEEEEECCCSTTCHHHHHHHHHHHT---TCEEEEEESSGGGHHHHHHHHGGGTC-SSCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCC-CcEEEEEccCCCHHHHHHHHHH
Confidence            35789999984    4454 34445553   78999999999988888888777653 357777777532      2222


Q ss_pred             HhhcccCCCceeEEEEe
Q 029764           88 LLKYSENEGSFDYAFVD  104 (188)
Q Consensus        88 ~~~~~~~~~~~D~i~id  104 (188)
                      ..+.   .+..|.++..
T Consensus        80 ~~~~---~G~iD~lvnn   93 (256)
T 4fs3_A           80 IGKD---VGNIDGVYHS   93 (256)
T ss_dssp             HHHH---HCCCSEEEEC
T ss_pred             HHHH---hCCCCEEEec
Confidence            2221   4789988865

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=91.27  E-value=0.63  Score=36.51  Aligned_cols=80  Identities=15%  Similarity=0.047  Sum_probs=49.4

Q ss_pred             CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCce
Q 029764           21 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSF   98 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~   98 (188)
                      ..+|+-+||  |..+..+++.+.....|+.+|.+.+.++.+++         .+..+..|+.+  .+..+.      .+.
T Consensus        16 ~mkilvlGa--G~vG~~~~~~L~~~~~v~~~~~~~~~~~~~~~---------~~~~~~~d~~d~~~l~~~~------~~~   78 (365)
T 3abi_A           16 HMKVLILGA--GNIGRAIAWDLKDEFDVYIGDVNNENLEKVKE---------FATPLKVDASNFDKLVEVM------KEF   78 (365)
T ss_dssp             CCEEEEECC--SHHHHHHHHHHTTTSEEEEEESCHHHHHHHTT---------TSEEEECCTTCHHHHHHHH------TTC
T ss_pred             ccEEEEECC--CHHHHHHHHHHhcCCCeEEEEcCHHHHHHHhc---------cCCcEEEecCCHHHHHHHH------hCC
Confidence            357999998  66666666666656789999998877665432         23445555533  333432      568


Q ss_pred             eEEEEeCCccchHHHHHHH
Q 029764           99 DYAFVDADKDNYCNYHERL  117 (188)
Q Consensus        99 D~i~id~~~~~~~~~~~~~  117 (188)
                      |+|+...++.......+.|
T Consensus        79 DvVi~~~p~~~~~~v~~~~   97 (365)
T 3abi_A           79 ELVIGALPGFLGFKSIKAA   97 (365)
T ss_dssp             SEEEECCCGGGHHHHHHHH
T ss_pred             CEEEEecCCcccchHHHHH
Confidence            9988765443333444444

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=91.12  E-value=3.9  Score=30.83  Aligned_cols=80  Identities=16%  Similarity=0.208  Sum_probs=47.7

Q ss_pred             CCCEEEEEcccc----hH-HHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcc
Q 029764           20 NAKKTIEIGVFT----GY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYS   92 (188)
Q Consensus        20 ~~~~vLeiG~g~----G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~   92 (188)
                      .++++|-.|.++    |. .+..|++.   +.+|+.++.+++..+.+++..+..+   .+.++..|..+  .+..+.+..
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~---G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~  102 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQ---GAEVALTYLSETFKKRVDPLAESLG---VKLTVPCDVSDAESVDNMFKVL  102 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHT---TCEEEEEESSGGGHHHHHHHHHHHT---CCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHC---CCEEEEEeCChHHHHHHHHHHHhcC---CeEEEEcCCCCHHHHHHHHHHH
Confidence            457899999743    33 33334443   6799999998877666666555544   35677777543  122221110


Q ss_pred             -cCCCceeEEEEeC
Q 029764           93 -ENEGSFDYAFVDA  105 (188)
Q Consensus        93 -~~~~~~D~i~id~  105 (188)
                       ...+.+|+++..+
T Consensus       103 ~~~~g~iD~lVnnA  116 (296)
T 3k31_A          103 AEEWGSLDFVVHAV  116 (296)
T ss_dssp             HHHHSCCSEEEECC
T ss_pred             HHHcCCCCEEEECC
Confidence             0136789998764

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=91.11  E-value=2.9  Score=30.73  Aligned_cols=107  Identities=21%  Similarity=0.270  Sum_probs=61.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcc-cC
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-EN   94 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~-~~   94 (188)
                      .+++++|-.|++.| .+..+++.+ ..+.+|+.++.+++.++...+.+   +  .++.++..|..+.  +..+.+.. ..
T Consensus         6 l~gk~~lVTGas~g-IG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (255)
T 4eso_A            6 YQGKKAIVIGGTHG-MGLATVRRLVEGGAEVLLTGRNESNIARIREEF---G--PRVHALRSDIADLNEIAVLGAAAGQT   79 (255)
T ss_dssp             TTTCEEEEETCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---G--GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CcceEEEccCCCHHHHHHHHHHHHHH
Confidence            45678998887655 334444333 13679999999988776665544   2  3678888876432  12111100 01


Q ss_pred             CCceeEEEEeCCcc-----------ch-----------HHHHHHHHhccCcCeEEEEec
Q 029764           95 EGSFDYAFVDADKD-----------NY-----------CNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        95 ~~~~D~i~id~~~~-----------~~-----------~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      .+.+|+++..+...           ..           ....+.+.+.++++|.+|.-.
T Consensus        80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is  138 (255)
T 4eso_A           80 LGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTS  138 (255)
T ss_dssp             HSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEEC
Confidence            36899988764211           11           123345557777888777643

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=91.05  E-value=0.97  Score=35.19  Aligned_cols=104  Identities=14%  Similarity=0.131  Sum_probs=55.3

Q ss_pred             HHcCCCEEEEEcc--cchHHHHHHHhhCCCCCEE-EEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029764           17 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQI-TAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   93 (188)
Q Consensus        17 ~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v-~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   93 (188)
                      +..++.+||-+|+  +.|..++.+|+..  +.++ ..++.++... .-++.++..|..   .++..+.. ....+.+...
T Consensus       164 ~~~~g~~VlV~Ga~G~vG~~aiqlak~~--Ga~vi~~~~~~~~~~-~~~~~~~~lGa~---~vi~~~~~-~~~~~~~~~~  236 (357)
T 1zsy_A          164 QLQPGDSVIQNASNSGVGQAVIQIAAAL--GLRTINVVRDRPDIQ-KLSDRLKSLGAE---HVITEEEL-RRPEMKNFFK  236 (357)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEECCCSCHH-HHHHHHHHTTCS---EEEEHHHH-HSGGGGGTTS
T ss_pred             ccCCCCEEEEeCCcCHHHHHHHHHHHHc--CCEEEEEecCccchH-HHHHHHHhcCCc---EEEecCcc-hHHHHHHHHh
Confidence            4557789999996  5778888899875  4554 4455544321 112233445632   22222110 0011111000


Q ss_pred             CCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           94 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        94 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      ..+.+|+||-....   .. ...+++.|+++|.++.-.
T Consensus       237 ~~~~~Dvvid~~g~---~~-~~~~~~~l~~~G~iv~~G  270 (357)
T 1zsy_A          237 DMPQPRLALNCVGG---KS-STELLRQLARGGTMVTYG  270 (357)
T ss_dssp             SSCCCSEEEESSCH---HH-HHHHHTTSCTTCEEEECC
T ss_pred             CCCCceEEEECCCc---HH-HHHHHHhhCCCCEEEEEe
Confidence            11258988754322   12 245789999999998753

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=90.94  E-value=0.71  Score=34.85  Aligned_cols=87  Identities=8%  Similarity=-0.010  Sum_probs=54.8

Q ss_pred             CEEEEEcccchHHHHHHHhhCCC-C---CEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           22 KKTIEIGVFTGYSLLLTALTIPE-D---GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~~-~---~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      .+|.=||+|  ..+..++..+.. +   .+|+..|.+++..+.+++.   .+    +.. ..+..+.+          ..
T Consensus         4 ~~I~iIG~G--~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~---~g----i~~-~~~~~~~~----------~~   63 (280)
T 3tri_A            4 SNITFIGGG--NMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEK---CG----VHT-TQDNRQGA----------LN   63 (280)
T ss_dssp             SCEEEESCS--HHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHT---TC----CEE-ESCHHHHH----------SS
T ss_pred             CEEEEEccc--HHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHH---cC----CEE-eCChHHHH----------hc
Confidence            467888885  433333333211 2   2799999999877665543   23    332 23333321          46


Q ss_pred             eeEEEEeCCccchHHHHHHHHhc-cCcCeEEE
Q 029764           98 FDYAFVDADKDNYCNYHERLMKL-LKVGGIAV  128 (188)
Q Consensus        98 ~D~i~id~~~~~~~~~~~~~~~~-L~~gG~lv  128 (188)
                      .|+||+...+....+.++.+.+. ++++..++
T Consensus        64 aDvVilav~p~~~~~vl~~l~~~~l~~~~iii   95 (280)
T 3tri_A           64 ADVVVLAVKPHQIKMVCEELKDILSETKILVI   95 (280)
T ss_dssp             CSEEEECSCGGGHHHHHHHHHHHHHTTTCEEE
T ss_pred             CCeEEEEeCHHHHHHHHHHHHhhccCCCeEEE
Confidence            79999987777778888888887 77765555

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=90.92  E-value=3.8  Score=30.78  Aligned_cols=105  Identities=13%  Similarity=0.187  Sum_probs=60.6

Q ss_pred             CCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchh-HHHHHHHHHhcCCCCcEEEEEcchHHH------HHHHhhc
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRET-YEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKY   91 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~-~~~a~~~~~~~~~~~~~~~~~~d~~~~------~~~~~~~   91 (188)
                      +++++|-.|++.| .+..+++.+ ..+.+|+.++.+++. .+...+.++..+  .++.++..|..+.      +....+.
T Consensus        46 ~gk~vlVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  122 (291)
T 3ijr_A           46 KGKNVLITGGDSG-IGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEG--VKCVLLPGDLSDEQHCKDIVQETVRQ  122 (291)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTT--CCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            4578888887654 344444333 136799999987653 444444444443  4688888886532      2222211


Q ss_pred             ccCCCceeEEEEeCCc----c-----c---h-----------HHHHHHHHhccCcCeEEEEe
Q 029764           92 SENEGSFDYAFVDADK----D-----N---Y-----------CNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        92 ~~~~~~~D~i~id~~~----~-----~---~-----------~~~~~~~~~~L~~gG~lv~~  130 (188)
                         .+.+|+++..+..    .     .   .           ....+.+.+.++++|.+|.-
T Consensus       123 ---~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~i  181 (291)
T 3ijr_A          123 ---LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINT  181 (291)
T ss_dssp             ---HSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             ---cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEE
Confidence               3678999876321    1     0   0           12345556788888877764

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=90.80  E-value=3.7  Score=30.14  Aligned_cols=79  Identities=4%  Similarity=-0.029  Sum_probs=48.9

Q ss_pred             CCCEEEEEccc----chH-HHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHH
Q 029764           20 NAKKTIEIGVF----TGY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQL   88 (188)
Q Consensus        20 ~~~~vLeiG~g----~G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~   88 (188)
                      +++++|-.|++    .|. .+..|++.   +.+|+.++.++...+.+++..+..+- .++.++..|..+      .+...
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~---G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~   81 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEA---GARLIFTYAGERLEKSVHELAGTLDR-NDSIILPCDVTNDAEIETCFASI   81 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHT---TCEEEEEESSGGGHHHHHHHHHTSSS-CCCEEEECCCSSSHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHC---CCEEEEecCchHHHHHHHHHHHhcCC-CCceEEeCCCCCHHHHHHHHHHH
Confidence            46789999965    333 33344443   67999999887776666666555442 257888877542      22222


Q ss_pred             hhcccCCCceeEEEEeC
Q 029764           89 LKYSENEGSFDYAFVDA  105 (188)
Q Consensus        89 ~~~~~~~~~~D~i~id~  105 (188)
                      .+.   .+.+|.++..+
T Consensus        82 ~~~---~g~id~li~~A   95 (266)
T 3oig_A           82 KEQ---VGVIHGIAHCI   95 (266)
T ss_dssp             HHH---HSCCCEEEECC
T ss_pred             HHH---hCCeeEEEEcc
Confidence            211   35789888764

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=90.66  E-value=1.8  Score=35.19  Aligned_cols=71  Identities=18%  Similarity=0.143  Sum_probs=50.6

Q ss_pred             CCEEEEEcccchHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCc
Q 029764           21 AKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGS   97 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~   97 (188)
                      ..+|+=+|+  |..+..+|+.+.. +..|+.||.+++.++.+.+.+       .+..++||+.+  .+.+.     .-..
T Consensus         3 ~M~iiI~G~--G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~-------~~~~i~Gd~~~~~~L~~A-----gi~~   68 (461)
T 4g65_A            3 AMKIIILGA--GQVGGTLAENLVGENNDITIVDKDGDRLRELQDKY-------DLRVVNGHASHPDVLHEA-----GAQD   68 (461)
T ss_dssp             CEEEEEECC--SHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS-------SCEEEESCTTCHHHHHHH-----TTTT
T ss_pred             cCEEEEECC--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc-------CcEEEEEcCCCHHHHHhc-----CCCc
Confidence            346777666  7888888888753 467999999999888776543       26778999865  45443     2467


Q ss_pred             eeEEEEeC
Q 029764           98 FDYAFVDA  105 (188)
Q Consensus        98 ~D~i~id~  105 (188)
                      .|++++--
T Consensus        69 ad~~ia~t   76 (461)
T 4g65_A           69 ADMLVAVT   76 (461)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEEEc
Confidence            89887643

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=90.49  E-value=3.6  Score=32.71  Aligned_cols=93  Identities=10%  Similarity=0.104  Sum_probs=56.1

Q ss_pred             EEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCC--------------CCcEEEEEcchHHHHHHH
Q 029764           23 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV--------------DHKINFIESEALSVLDQL   88 (188)
Q Consensus        23 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--------------~~~~~~~~~d~~~~~~~~   88 (188)
                      +|.-||+  |+.+..+|..+..+.+|+++|.+++.++..++.    +.              ..++.+ ..+..+.+   
T Consensus         2 kI~VIG~--G~vG~~~A~~La~G~~V~~~d~~~~~~~~l~~~----~~~i~e~~l~~~~~~~~~~l~~-t~~~~~~~---   71 (402)
T 1dlj_A            2 KIAVAGS--GYVGLSLGVLLSLQNEVTIVDILPSKVDKINNG----LSPIQDEYIEYYLKSKQLSIKA-TLDSKAAY---   71 (402)
T ss_dssp             EEEEECC--SHHHHHHHHHHTTTSEEEEECSCHHHHHHHHTT----CCSSCCHHHHHHHHHSCCCEEE-ESCHHHHH---
T ss_pred             EEEEECC--CHHHHHHHHHHhCCCEEEEEECCHHHHHHHHcC----CCCcCCCCHHHHHHhccCcEEE-eCCHHHHh---
Confidence            4666777  666666666554456899999998876654431    11              112222 22322221   


Q ss_pred             hhcccCCCceeEEEEeCCcc-----------chHHHHHHHHhccCcCeEEEEeccc
Q 029764           89 LKYSENEGSFDYAFVDADKD-----------NYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        89 ~~~~~~~~~~D~i~id~~~~-----------~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                             ...|+||+.....           .....++.+.+ +++|.+++.....
T Consensus        72 -------~~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~  119 (402)
T 1dlj_A           72 -------KEAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTI  119 (402)
T ss_dssp             -------HHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCC
T ss_pred             -------cCCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCC
Confidence                   3478999875433           35677777878 8888887763333

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=90.39  E-value=4.9  Score=30.77  Aligned_cols=90  Identities=12%  Similarity=-0.008  Sum_probs=54.3

Q ss_pred             CEEEEEcccchHHHHHHHhhCCC-C-CEEEEEeCCchh---HHHHHHHHHhcCCCCcEEEEEc-chHHHHHHHhhcccCC
Q 029764           22 KKTIEIGVFTGYSLLLTALTIPE-D-GQITAIDVNRET---YEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSENE   95 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~~-~-~~v~~iD~~~~~---~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~   95 (188)
                      .+|.=||+  |..+..++..+.. + .+|++.|.+++.   .+...+.+...+.       .. +..+.          .
T Consensus        25 m~IgvIG~--G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~-------~~~s~~e~----------~   85 (317)
T 4ezb_A           25 TTIAFIGF--GEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV-------EPLDDVAG----------I   85 (317)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC-------EEESSGGG----------G
T ss_pred             CeEEEECc--cHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC-------CCCCHHHH----------H
Confidence            57888887  5555555544422 4 589999998732   2222223333342       22 22222          1


Q ss_pred             CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ...|+||+........+.++.+.+.+++|.+++-.
T Consensus        86 ~~aDvVi~avp~~~~~~~~~~i~~~l~~~~ivv~~  120 (317)
T 4ezb_A           86 ACADVVLSLVVGAATKAVAASAAPHLSDEAVFIDL  120 (317)
T ss_dssp             GGCSEEEECCCGGGHHHHHHHHGGGCCTTCEEEEC
T ss_pred             hcCCEEEEecCCHHHHHHHHHHHhhcCCCCEEEEC
Confidence            45799999876666666678888889988876654

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=90.34  E-value=4.6  Score=30.39  Aligned_cols=82  Identities=11%  Similarity=0.156  Sum_probs=48.6

Q ss_pred             HcCCCEEEEEccc----chH-HHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhh
Q 029764           18 LVNAKKTIEIGVF----TGY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLK   90 (188)
Q Consensus        18 ~~~~~~vLeiG~g----~G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~   90 (188)
                      ..+++++|-.|.+    .|. .+..|++.   +.+|+.++.+++..+.+++..+..+   ++.++..|..+.  +..+.+
T Consensus        28 ~l~gk~~lVTGasg~~GIG~aia~~la~~---G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~  101 (293)
T 3grk_A           28 LLQGKRGLILGVANNRSIAWGIAKAAREA---GAELAFTYQGDALKKRVEPLAEELG---AFVAGHCDVADAASIDAVFE  101 (293)
T ss_dssp             TTTTCEEEEECCCSSSSHHHHHHHHHHHT---TCEEEEEECSHHHHHHHHHHHHHHT---CEEEEECCTTCHHHHHHHHH
T ss_pred             cCCCCEEEEEcCCCCCcHHHHHHHHHHHC---CCEEEEEcCCHHHHHHHHHHHHhcC---CceEEECCCCCHHHHHHHHH
Confidence            3567889999965    333 33334443   6789999988765555555544443   477888776431  222211


Q ss_pred             cc-cCCCceeEEEEeC
Q 029764           91 YS-ENEGSFDYAFVDA  105 (188)
Q Consensus        91 ~~-~~~~~~D~i~id~  105 (188)
                      .. ...+.+|+++..+
T Consensus       102 ~~~~~~g~iD~lVnnA  117 (293)
T 3grk_A          102 TLEKKWGKLDFLVHAI  117 (293)
T ss_dssp             HHHHHTSCCSEEEECC
T ss_pred             HHHHhcCCCCEEEECC
Confidence            10 1146899998764

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=90.17  E-value=2.6  Score=32.14  Aligned_cols=84  Identities=8%  Similarity=0.057  Sum_probs=48.9

Q ss_pred             CCCEEEEEcccc-hHH-HHHHHhhCCCCCEEEEEeCCc------------------hhHHHHHHHHHhcCCCCcEEEEEc
Q 029764           20 NAKKTIEIGVFT-GYS-LLLTALTIPEDGQITAIDVNR------------------ETYEIGLPIIKKAGVDHKINFIES   79 (188)
Q Consensus        20 ~~~~vLeiG~g~-G~~-~~~la~~~~~~~~v~~iD~~~------------------~~~~~a~~~~~~~~~~~~~~~~~~   79 (188)
                      +..+|+-+|+|. |.. +..|+.. . -++++.+|.+.                  ...+.+++.+...+-.-+++.+..
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~a-G-VG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~~  112 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRC-G-IGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNY  112 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHH-T-CSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEECC
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHc-C-CCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEecc
Confidence            456999999973 443 3335544 2 47999999776                  566777888877664444555554


Q ss_pred             chH--HHHHHHhh----ccc-CCCceeEEEEeC
Q 029764           80 EAL--SVLDQLLK----YSE-NEGSFDYAFVDA  105 (188)
Q Consensus        80 d~~--~~~~~~~~----~~~-~~~~~D~i~id~  105 (188)
                      +..  +.+..+.+    ... ....||+|+-..
T Consensus       113 ~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~  145 (292)
T 3h8v_A          113 NITTVENFQHFMDRISNGGLEEGKPVDLVLSCV  145 (292)
T ss_dssp             CTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECC
T ss_pred             cCCcHHHHHHHhhhhcccccccCCCCCEEEECC
Confidence            432  22233211    000 014799998544

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=90.11  E-value=1.7  Score=35.51  Aligned_cols=100  Identities=13%  Similarity=0.109  Sum_probs=58.1

Q ss_pred             CCCEEEEEcccc-hH-HHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHh---cCC---------CCcEEEEEcchHHHH
Q 029764           20 NAKKTIEIGVFT-GY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK---AGV---------DHKINFIESEALSVL   85 (188)
Q Consensus        20 ~~~~vLeiG~g~-G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~---~~~---------~~~~~~~~~d~~~~~   85 (188)
                      ...+|.-||+|. |. .+..|++.   +.+|+++|.+++.++..++....   .++         ..++.+ ..|..+.+
T Consensus         7 ~~~~I~VIG~G~vG~~lA~~la~~---G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~-ttd~~~a~   82 (478)
T 2y0c_A            7 GSMNLTIIGSGSVGLVTGACLADI---GHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRF-STDIEAAV   82 (478)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT---TCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE-ECCHHHHH
T ss_pred             CCceEEEECcCHHHHHHHHHHHhC---CCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEE-ECCHHHHh
Confidence            345788888863 22 23334432   56899999999887766553100   000         012332 22332221


Q ss_pred             HHHhhcccCCCceeEEEEeCCc----------cchHHHHHHHHhccCcCeEEEEeccc
Q 029764           86 DQLLKYSENEGSFDYAFVDADK----------DNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        86 ~~~~~~~~~~~~~D~i~id~~~----------~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                                ...|+||+.-..          ......++.+.+.|++|.+++.....
T Consensus        83 ----------~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~STv  130 (478)
T 2y0c_A           83 ----------AHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKSTV  130 (478)
T ss_dssp             ----------HHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCC
T ss_pred             ----------hcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeCCc
Confidence                      357899987533          45667778888899998877665433

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=90.01  E-value=3.5  Score=33.40  Aligned_cols=100  Identities=16%  Similarity=0.170  Sum_probs=59.2

Q ss_pred             CEEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhc---CC---------CCcEEEEEcchHHHHHHH
Q 029764           22 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKA---GV---------DHKINFIESEALSVLDQL   88 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~---~~---------~~~~~~~~~d~~~~~~~~   88 (188)
                      .+|.-||+  |+.+..+|..+. .+.+|+++|.+++.++..++.....   ++         ..++.+ ..|..+.    
T Consensus         3 mkI~VIG~--G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~-t~d~~ea----   75 (450)
T 3gg2_A            3 LDIAVVGI--GYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRF-GTEIEQA----   75 (450)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEE-ESCHHHH----
T ss_pred             CEEEEECc--CHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEE-ECCHHHH----
Confidence            36777887  555555554432 2568999999998877665421000   00         122332 2333222    


Q ss_pred             hhcccCCCceeEEEEeCCcc----------chHHHHHHHHhccCcCeEEEEecccc
Q 029764           89 LKYSENEGSFDYAFVDADKD----------NYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        89 ~~~~~~~~~~D~i~id~~~~----------~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                            -...|+||+..+..          .....++.+.+.+++|.+++......
T Consensus        76 ------~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~  125 (450)
T 3gg2_A           76 ------VPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTVP  125 (450)
T ss_dssp             ------GGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCC
T ss_pred             ------HhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeCC
Confidence                  14579999875433          45677788888899888777655443

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=89.97  E-value=1.7  Score=35.28  Aligned_cols=39  Identities=21%  Similarity=0.233  Sum_probs=26.7

Q ss_pred             CEEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHH
Q 029764           22 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGL   62 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~   62 (188)
                      .+|--||+  |+.++.+|..+. .+-+|+++|++++.++..+
T Consensus        22 ~~IaViGl--GYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln   61 (444)
T 3vtf_A           22 ASLSVLGL--GYVGVVHAVGFALLGHRVVGYDVNPSIVERLR   61 (444)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHHHTCEEEEECSCHHHHHHHH
T ss_pred             CEEEEEcc--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHH
Confidence            46888887  555554443332 2569999999998877654

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=89.91  E-value=2.3  Score=32.53  Aligned_cols=85  Identities=9%  Similarity=0.128  Sum_probs=53.9

Q ss_pred             CCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcc-cCC
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-ENE   95 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~-~~~   95 (188)
                      .+++||-.|++.| .+..+++.+ ..+.+|+.++.+++..+.+.+.+...+...++.++..|..+.  +..+.+.. ...
T Consensus         7 ~~k~vlVTGas~g-IG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   85 (319)
T 3ioy_A            7 AGRTAFVTGGANG-VGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF   85 (319)
T ss_dssp             TTCEEEEETTTST-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEcCCchH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence            4678898887654 444444433 236799999999988888777776655434688888886431  22221110 013


Q ss_pred             CceeEEEEeC
Q 029764           96 GSFDYAFVDA  105 (188)
Q Consensus        96 ~~~D~i~id~  105 (188)
                      +.+|+++..+
T Consensus        86 g~id~lv~nA   95 (319)
T 3ioy_A           86 GPVSILCNNA   95 (319)
T ss_dssp             CCEEEEEECC
T ss_pred             CCCCEEEECC
Confidence            6899998764

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=89.87  E-value=4.5  Score=29.55  Aligned_cols=83  Identities=11%  Similarity=0.097  Sum_probs=50.6

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCC--CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcc-cC
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIP--EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-EN   94 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~-~~   94 (188)
                      +.++||-.|+ +|..+..+++.+.  .+.+|+.++.+++......+.+...+  .++.++..|..+.  +..+.+.. ..
T Consensus         3 ~~k~vlITGa-sggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   79 (276)
T 1wma_A            3 GIHVALVTGG-NKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKE   79 (276)
T ss_dssp             CCCEEEESSC-SSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHHh
Confidence            4567887774 5666666665542  26799999998877776666665544  3577888876432  22221100 01


Q ss_pred             CCceeEEEEeC
Q 029764           95 EGSFDYAFVDA  105 (188)
Q Consensus        95 ~~~~D~i~id~  105 (188)
                      .+.+|+++..+
T Consensus        80 ~g~id~li~~A   90 (276)
T 1wma_A           80 YGGLDVLVNNA   90 (276)
T ss_dssp             HSSEEEEEECC
T ss_pred             cCCCCEEEECC
Confidence            25799998664

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=89.80  E-value=0.91  Score=33.97  Aligned_cols=88  Identities=16%  Similarity=0.174  Sum_probs=52.7

Q ss_pred             EEEEEcccchHHHHHHHhhCCC-CC--EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC-ce
Q 029764           23 KTIEIGVFTGYSLLLTALTIPE-DG--QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG-SF   98 (188)
Q Consensus        23 ~vLeiG~g~G~~~~~la~~~~~-~~--~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~   98 (188)
                      +|.=||+|  ..+..++..+.. +.  +|+++|.+++..+.++    ..|...  .. ..+..+.          .. ..
T Consensus         3 ~I~iIG~G--~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~----~~g~~~--~~-~~~~~~~----------~~~~a   63 (281)
T 2g5c_A            3 NVLIVGVG--FMGGSFAKSLRRSGFKGKIYGYDINPESISKAV----DLGIID--EG-TTSIAKV----------EDFSP   63 (281)
T ss_dssp             EEEEESCS--HHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH----HTTSCS--EE-ESCGGGG----------GGTCC
T ss_pred             EEEEEecC--HHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH----HCCCcc--cc-cCCHHHH----------hcCCC
Confidence            57778875  444444433321 33  7999999988766544    234321  11 2222111          14 68


Q ss_pred             eEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764           99 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      |+|++..........++.+.+.++++.+++.
T Consensus        64 DvVilavp~~~~~~v~~~l~~~l~~~~iv~~   94 (281)
T 2g5c_A           64 DFVMLSSPVRTFREIAKKLSYILSEDATVTD   94 (281)
T ss_dssp             SEEEECSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             CEEEEcCCHHHHHHHHHHHHhhCCCCcEEEE
Confidence            9999887666666777777788888875553

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=89.73  E-value=1.1  Score=35.87  Aligned_cols=42  Identities=24%  Similarity=0.232  Sum_probs=33.3

Q ss_pred             CCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHH
Q 029764           20 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLP   63 (188)
Q Consensus        20 ~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~   63 (188)
                      ++.+|+-+|+| .|..+..++..+  +.+|+.+|.++..++.+++
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~l--Ga~V~v~D~~~~~l~~~~~  231 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRL--GAVVSATDVRPAAKEQVAS  231 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSTTHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHH
Confidence            67899999998 466666777765  5799999999988776654

>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}

Probab=89.65  E-value=3.2  Score=27.93  Aligned_cols=95  Identities=12%  Similarity=-0.025  Sum_probs=49.6

Q ss_pred             ccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCc-
Q 029764           29 VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-  107 (188)
Q Consensus        29 ~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~-  107 (188)
                      .|.+.......+......+|..+|-++......++.+...+.. .+.....+..+.+..+.     ...+|+|++|... 
T Consensus         9 ~~~~~~~~~~~~M~~~~~~ILivdd~~~~~~~l~~~L~~~~~~-~~v~~~~~~~~al~~l~-----~~~~dlvilD~~l~   82 (164)
T 3t8y_A            9 HHSSGLVPRGSHMTDRVIRVLVVDDSAFMRMVLKDIIDSQPDM-KVVGFAKDGLEAVEKAI-----ELKPDVITMDIEMP   82 (164)
T ss_dssp             ---------------CCEEEEEECSCHHHHHHHHHHHHTSTTE-EEEEEESSHHHHHHHHH-----HHCCSEEEECSSCS
T ss_pred             cccCCcccCccccccCccEEEEEcCCHHHHHHHHHHHhcCCCe-EEEEecCCHHHHHHHhc-----cCCCCEEEEeCCCC
Confidence            4455555555544333468999999999999989888775421 11223556666555443     2469999999643 


Q ss_pred             -cchHHHHHHHHhccCcCeEEEEe
Q 029764          108 -DNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus       108 -~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                       .+..++++.+.+.- +--++++.
T Consensus        83 ~~~g~~l~~~lr~~~-~~~ii~~s  105 (164)
T 3t8y_A           83 NLNGIEALKLIMKKA-PTRVIMVS  105 (164)
T ss_dssp             SSCHHHHHHHHHHHS-CCEEEEEE
T ss_pred             CCCHHHHHHHHHhcC-CceEEEEe
Confidence             23455666664432 34455554

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=89.59  E-value=0.97  Score=36.10  Aligned_cols=42  Identities=24%  Similarity=0.231  Sum_probs=31.5

Q ss_pred             cCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHH
Q 029764           19 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGL   62 (188)
Q Consensus        19 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~   62 (188)
                      .++.+|+-+|+| .|..++.++..+  +.+|+.+|.+++..+.++
T Consensus       170 l~g~~V~ViGaG~iG~~aa~~a~~~--Ga~V~v~D~~~~~~~~~~  212 (401)
T 1x13_A          170 VPPAKVMVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQ  212 (401)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCGGGHHHHH
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHH
Confidence            357899999987 455566667665  468999999998776653

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=89.40  E-value=1.6  Score=36.00  Aligned_cols=89  Identities=12%  Similarity=0.081  Sum_probs=54.5

Q ss_pred             HcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           18 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        18 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      ..++++|+-+|+| .|......++.+  +.+|+++|.++.....+++    .|.    +.  .+..+    .      ..
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~--Ga~Viv~d~~~~~~~~A~~----~Ga----~~--~~l~e----~------l~  328 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQ--GARVSVTEIDPINALQAMM----EGF----DV--VTVEE----A------IG  328 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTC----EE--CCHHH----H------GG
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCC----EE--ecHHH----H------Hh
Confidence            4577899999985 344444555554  5699999999887655543    342    22  23222    2      14


Q ss_pred             ceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           97 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        97 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ..|+|+.........  -....+.+++||.++.-
T Consensus       329 ~aDvVi~atgt~~~i--~~~~l~~mk~ggilvnv  360 (494)
T 3ce6_A          329 DADIVVTATGNKDII--MLEHIKAMKDHAILGNI  360 (494)
T ss_dssp             GCSEEEECSSSSCSB--CHHHHHHSCTTCEEEEC
T ss_pred             CCCEEEECCCCHHHH--HHHHHHhcCCCcEEEEe
Confidence            689998764332211  12556778999988753

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=89.39  E-value=0.24  Score=43.30  Aligned_cols=98  Identities=9%  Similarity=0.044  Sum_probs=59.6

Q ss_pred             HHcCCCEEEEEc--ccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           17 RLVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        17 ~~~~~~~vLeiG--~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      +..++.+||-.|  .|.|..++.+|+..  +.+|++++.++ ..+..+     .+...-+.....+..+.+.+..    .
T Consensus       342 ~l~~G~~VLI~gaaGgvG~~aiqlAk~~--Ga~V~~t~~~~-k~~~l~-----lga~~v~~~~~~~~~~~i~~~t----~  409 (795)
T 3slk_A          342 GLRPGESLLVHSAAGGVGMAAIQLARHL--GAEVYATASED-KWQAVE-----LSREHLASSRTCDFEQQFLGAT----G  409 (795)
T ss_dssp             CCCTTCCEEEESTTBHHHHHHHHHHHHT--TCCEEEECCGG-GGGGSC-----SCGGGEECSSSSTHHHHHHHHS----C
T ss_pred             CCCCCCEEEEecCCCHHHHHHHHHHHHc--CCEEEEEeChH-Hhhhhh-----cChhheeecCChhHHHHHHHHc----C
Confidence            455778999998  46788999999986  56888888554 222111     3321111111123333333321    2


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ...+|+||-....    +.++..++.|+++|.++.-
T Consensus       410 g~GvDvVld~~gg----~~~~~~l~~l~~~Gr~v~i  441 (795)
T 3slk_A          410 GRGVDVVLNSLAG----EFADASLRMLPRGGRFLEL  441 (795)
T ss_dssp             SSCCSEEEECCCT----TTTHHHHTSCTTCEEEEEC
T ss_pred             CCCeEEEEECCCc----HHHHHHHHHhcCCCEEEEe
Confidence            3579998864322    3457888999999999874

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=89.37  E-value=5.2  Score=29.62  Aligned_cols=86  Identities=10%  Similarity=0.011  Sum_probs=52.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcc-cC
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-EN   94 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~-~~   94 (188)
                      .+++++|-.|+. |..+..+++.+ ..+.+|+.++.+++..+...+.+...+...++.++..|..+.  +..+.+.. ..
T Consensus        30 l~~k~vlVTGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~  108 (279)
T 1xg5_A           30 WRDRLALVTGAS-GGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ  108 (279)
T ss_dssp             GTTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence            356788888864 44444444433 136799999999887777666666655555678888876432  22221100 01


Q ss_pred             CCceeEEEEeC
Q 029764           95 EGSFDYAFVDA  105 (188)
Q Consensus        95 ~~~~D~i~id~  105 (188)
                      .+.+|+++..+
T Consensus       109 ~g~iD~vi~~A  119 (279)
T 1xg5_A          109 HSGVDICINNA  119 (279)
T ss_dssp             HCCCSEEEECC
T ss_pred             CCCCCEEEECC
Confidence            25789998764

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=89.36  E-value=1.9  Score=31.66  Aligned_cols=83  Identities=16%  Similarity=0.045  Sum_probs=53.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcc-cC
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYS-EN   94 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~-~~   94 (188)
                      .+++++|-.|++.| .+..+++.+ ..+.+|+.++.+++.++.+.+.+...+  .++.++..|..+  .+..+.+.. ..
T Consensus         5 ~~~k~vlVTGas~G-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (252)
T 3h7a_A            5 PRNATVAVIGAGDY-IGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAG--GRIVARSLDARNEDEVTAFLNAADAH   81 (252)
T ss_dssp             CCSCEEEEECCSSH-HHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECcCCCHHHHHHHHHHHHhh
Confidence            35678888887655 333333333 126799999999998888887777654  468888888643  222222210 12


Q ss_pred             CCceeEEEEeC
Q 029764           95 EGSFDYAFVDA  105 (188)
Q Consensus        95 ~~~~D~i~id~  105 (188)
                       +.+|+++..+
T Consensus        82 -g~id~lv~nA   91 (252)
T 3h7a_A           82 -APLEVTIFNV   91 (252)
T ss_dssp             -SCEEEEEECC
T ss_pred             -CCceEEEECC
Confidence             6899998764

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=89.27  E-value=2.2  Score=32.31  Aligned_cols=84  Identities=17%  Similarity=0.230  Sum_probs=52.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcc-cC
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-EN   94 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~-~~   94 (188)
                      ..++++|-.|++.| .+..+++.+ ..+.+|+.++.+++.++.+.+.+...+  .++.++..|..+.  +..+.+.. ..
T Consensus        29 l~gk~vlVTGas~g-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  105 (301)
T 3tjr_A           29 FDGRAAVVTGGASG-IGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQG--FDAHGVVCDVRHLDEMVRLADEAFRL  105 (301)
T ss_dssp             STTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHh
Confidence            45678998887655 334444333 136799999999988888777776654  3688888876532  22221110 01


Q ss_pred             CCceeEEEEeC
Q 029764           95 EGSFDYAFVDA  105 (188)
Q Consensus        95 ~~~~D~i~id~  105 (188)
                      .+.+|+++..+
T Consensus       106 ~g~id~lvnnA  116 (301)
T 3tjr_A          106 LGGVDVVFSNA  116 (301)
T ss_dssp             HSSCSEEEECC
T ss_pred             CCCCCEEEECC
Confidence            25799998764

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=89.13  E-value=3.3  Score=31.91  Aligned_cols=97  Identities=9%  Similarity=0.063  Sum_probs=57.3

Q ss_pred             CEEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHh----cCCCC--cEEEEEcchHHHHHHHhhcccC
Q 029764           22 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKK----AGVDH--KINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~----~~~~~--~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      .+|.=||+|.  .+..++..+. .+.+|+.+|.+++.++..++....    .+...  ++.....+..+.   +      
T Consensus         5 mki~iiG~G~--~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------   73 (359)
T 1bg6_A            5 KTYAVLGLGN--GGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA---V------   73 (359)
T ss_dssp             CEEEEECCSH--HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH---H------
T ss_pred             CeEEEECCCH--HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHH---H------
Confidence            5789999864  3333333221 156899999998877665543100    00000  000112232221   1      


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                       ..+|+|++........+.++.+.+.++++..++..
T Consensus        74 -~~~D~vi~~v~~~~~~~~~~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           74 -KDADVILIVVPAIHHASIAANIASYISEGQLIILN  108 (359)
T ss_dssp             -TTCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             -hcCCEEEEeCCchHHHHHHHHHHHhCCCCCEEEEc
Confidence             46899999876666678888888889998876654

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=89.11  E-value=2.4  Score=31.38  Aligned_cols=82  Identities=11%  Similarity=0.064  Sum_probs=52.2

Q ss_pred             CCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCC
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEG   96 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~   96 (188)
                      .++++|-.|++.| .+..+++.+ ..+.+|+.++.+++..+...+.+...+....+.++..|..+  .+..+.+.   .+
T Consensus         9 ~~k~~lVTGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~---~g   84 (267)
T 3t4x_A            9 KGKTALVTGSTAG-IGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEK---YP   84 (267)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHH---CC
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHh---cC
Confidence            4678888886544 444444433 13679999999988877776666655433457778877643  23333322   46


Q ss_pred             ceeEEEEeC
Q 029764           97 SFDYAFVDA  105 (188)
Q Consensus        97 ~~D~i~id~  105 (188)
                      ..|+++..+
T Consensus        85 ~id~lv~nA   93 (267)
T 3t4x_A           85 KVDILINNL   93 (267)
T ss_dssp             CCSEEEECC
T ss_pred             CCCEEEECC
Confidence            899998764

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=89.06  E-value=5  Score=30.17  Aligned_cols=109  Identities=17%  Similarity=0.189  Sum_probs=60.5

Q ss_pred             CCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCc--hhHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcc-c
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNR--ETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-E   93 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~--~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~-~   93 (188)
                      +++++|-.|++.| .+..+++.+ ..+.+|+.++.+.  +..+...+.++..+  .++.++..|..+.  +..+.+.. .
T Consensus        48 ~~k~vlVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~  124 (294)
T 3r3s_A           48 KDRKALVTGGDSG-IGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECG--RKAVLLPGDLSDESFARSLVHKARE  124 (294)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTT--CCEEECCCCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence            4578898887544 444444433 1267899888763  34455555555544  4678888776431  12211110 0


Q ss_pred             CCCceeEEEEeCCc----c-----c---h-----------HHHHHHHHhccCcCeEEEEec
Q 029764           94 NEGSFDYAFVDADK----D-----N---Y-----------CNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        94 ~~~~~D~i~id~~~----~-----~---~-----------~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      ..+.+|+++..+..    .     .   .           ..+.+.+.+.++++|.+|.-.
T Consensus       125 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~is  185 (294)
T 3r3s_A          125 ALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTS  185 (294)
T ss_dssp             HHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred             HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEEC
Confidence            13678999876421    0     0   0           123445567888888877643

>3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus}

Probab=88.99  E-value=0.95  Score=34.12  Aligned_cols=40  Identities=20%  Similarity=0.386  Sum_probs=27.1

Q ss_pred             CCceeEEEEeCC----ccchHHHHHH----------HHhccCcCeEEEEecccc
Q 029764           95 EGSFDYAFVDAD----KDNYCNYHER----------LMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        95 ~~~~D~i~id~~----~~~~~~~~~~----------~~~~L~~gG~lv~~~~~~  134 (188)
                      .+.||+||++..    .+++++.-+.          ...+|+|||.+++...-+
T Consensus       209 ~grYDlVfvNv~TpyR~HHYQQCeDHA~~l~mL~~~al~~L~pGGtlv~~aYGy  262 (324)
T 3trk_A          209 LGRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRAYGY  262 (324)
T ss_dssp             GCCEEEEEEECCCCCCSSHHHHHHHHHHHHHHHHHHGGGGEEEEEEEEEEECCC
T ss_pred             CCceeEEEEecCCccccchHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEeecc
Confidence            389999999952    2344443222          247999999999875544

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=88.79  E-value=3.5  Score=33.49  Aligned_cols=90  Identities=17%  Similarity=0.118  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHH-cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH-
Q 029764            6 PDAGQLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS-   83 (188)
Q Consensus         6 ~~~~~~l~~l~~~-~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-   83 (188)
                      ....+++..+-.. .+.++|+=+|.  |..+..+|+.+.....+..+|.+++..+.+.+.+      ++..+++||+.+ 
T Consensus       219 ~~i~~~~~~~g~~~~~~~~v~I~Gg--G~ig~~lA~~L~~~~~v~iIE~d~~r~~~la~~l------~~~~Vi~GD~td~  290 (461)
T 4g65_A          219 NHIRSVMSELQRLEKPYRRIMIVGG--GNIGASLAKRLEQTYSVKLIERNLQRAEKLSEEL------ENTIVFCGDAADQ  290 (461)
T ss_dssp             TTHHHHHHHTTGGGSCCCEEEEECC--SHHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHC------TTSEEEESCTTCH
T ss_pred             chHHHHHHhhccccccccEEEEEcc--hHHHHHHHHHhhhcCceEEEecCHHHHHHHHHHC------CCceEEeccccch
Confidence            3444555544333 34568888776  7788888888876789999999998777666553      257789999876 


Q ss_pred             -HHHHHhhcccCCCceeEEEEeCCcc
Q 029764           84 -VLDQLLKYSENEGSFDYAFVDADKD  108 (188)
Q Consensus        84 -~~~~~~~~~~~~~~~D~i~id~~~~  108 (188)
                       .+.+-     .-...|+++.--...
T Consensus       291 ~~L~ee-----~i~~~D~~ia~T~~D  311 (461)
T 4g65_A          291 ELLTEE-----NIDQVDVFIALTNED  311 (461)
T ss_dssp             HHHHHT-----TGGGCSEEEECCSCH
T ss_pred             hhHhhc-----CchhhcEEEEcccCc
Confidence             34331     235789988754433

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=88.56  E-value=2.3  Score=38.09  Aligned_cols=74  Identities=8%  Similarity=-0.090  Sum_probs=51.5

Q ss_pred             CEEEEEcccchHHHHHHHhhCCCCC--EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcc-------
Q 029764           22 KKTIEIGVFTGYSLLLTALTIPEDG--QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS-------   92 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~~~~--~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-------   92 (188)
                      .+++|+.||.|..+.-+..+   +.  .+.++|+++.+....+.|+      +...++.+|..++.......+       
T Consensus       541 l~~iDLFaG~GGlslGl~~A---G~~~vv~avEid~~A~~ty~~N~------p~~~~~~~DI~~l~~~~~~~di~~~~~~  611 (1002)
T 3swr_A          541 LRTLDVFSGCGGLSEGFHQA---GISDTLWAIEMWDPAAQAFRLNN------PGSTVFTEDCNILLKLVMAGETTNSRGQ  611 (1002)
T ss_dssp             EEEEEESCTTSHHHHHHHHH---TSEEEEEEECSSHHHHHHHHHHC------TTSEEECSCHHHHHHHHHHTCSBCTTCC
T ss_pred             CeEEEeccCccHHHHHHHHC---CCCceEEEEECCHHHHHHHHHhC------CCCccccccHHHHhhhccchhhhhhhhh
Confidence            48999999999999988775   43  5789999999888777764      235677888766543211110       


Q ss_pred             --cCCCceeEEEEe
Q 029764           93 --ENEGSFDYAFVD  104 (188)
Q Consensus        93 --~~~~~~D~i~id  104 (188)
                        +..+.+|+|+..
T Consensus       612 ~lp~~~~vDll~GG  625 (1002)
T 3swr_A          612 RLPQKGDVEMLCGG  625 (1002)
T ss_dssp             BCCCTTTCSEEEEC
T ss_pred             hcccCCCeeEEEEc
Confidence              012468999865

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=88.45  E-value=5.6  Score=28.80  Aligned_cols=78  Identities=12%  Similarity=0.082  Sum_probs=49.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCC
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENE   95 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~   95 (188)
                      .++++||-.|++.| .+..+++.+ ..+.+|+.++.+++.++...+.+     ..++.+...|..+  .+..+.+.   .
T Consensus        12 ~~~k~vlVTGas~g-IG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~---~   82 (249)
T 3f9i_A           12 LTGKTSLITGASSG-IGSAIARLLHKLGSKVIISGSNEEKLKSLGNAL-----KDNYTIEVCNLANKEECSNLISK---T   82 (249)
T ss_dssp             CTTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CSSEEEEECCTTSHHHHHHHHHT---C
T ss_pred             CCCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh-----ccCccEEEcCCCCHHHHHHHHHh---c
Confidence            35678888887544 444444433 13679999999888776665544     2367888887654  23333332   3


Q ss_pred             CceeEEEEeC
Q 029764           96 GSFDYAFVDA  105 (188)
Q Consensus        96 ~~~D~i~id~  105 (188)
                      +.+|+++..+
T Consensus        83 ~~id~li~~A   92 (249)
T 3f9i_A           83 SNLDILVCNA   92 (249)
T ss_dssp             SCCSEEEECC
T ss_pred             CCCCEEEECC
Confidence            5799998654

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=88.37  E-value=1.5  Score=33.65  Aligned_cols=95  Identities=6%  Similarity=-0.047  Sum_probs=55.2

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEE-----EcchHHHHHHHhhccc
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI-----ESEALSVLDQLLKYSE   93 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~-----~~d~~~~~~~~~~~~~   93 (188)
                      ...+|.-||+|.  .+..+|..+. .+..|+.+ .+++.++..++.-..... ....+.     ..+..    .      
T Consensus        18 ~~~kI~IiGaGa--~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~-~~~~~~~~~~~~~~~~----~------   83 (318)
T 3hwr_A           18 QGMKVAIMGAGA--VGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLET-QSFDEQVKVSASSDPS----A------   83 (318)
T ss_dssp             --CEEEEESCSH--HHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEEC-SSCEEEECCEEESCGG----G------
T ss_pred             cCCcEEEECcCH--HHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEc-CCCcEEEeeeeeCCHH----H------
Confidence            446799998863  3333333221 14588888 888777666543100000 011111     11211    1      


Q ss_pred             CCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764           94 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        94 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                       ...+|+|++.-......+.++.+.+.++++..++.
T Consensus        84 -~~~~D~vilavk~~~~~~~l~~l~~~l~~~~~iv~  118 (318)
T 3hwr_A           84 -VQGADLVLFCVKSTDTQSAALAMKPALAKSALVLS  118 (318)
T ss_dssp             -GTTCSEEEECCCGGGHHHHHHHHTTTSCTTCEEEE
T ss_pred             -cCCCCEEEEEcccccHHHHHHHHHHhcCCCCEEEE
Confidence             25789999987777778888999899999887664

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=88.23  E-value=6.1  Score=28.99  Aligned_cols=84  Identities=12%  Similarity=0.101  Sum_probs=48.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhC-CCCCEEEEE-eCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcc-c
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAI-DVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-E   93 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~i-D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~-~   93 (188)
                      ..++++|-.|++.| .+..+++.+ ..+.+|+.+ +.+++..+.+.+.+...+  .++.++..|..+.  +..+.+.. .
T Consensus         6 l~~k~vlVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~   82 (259)
T 3edm_A            6 FTNRTIVVAGAGRD-IGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLG--RSALAIKADLTNAAEVEAAISAAAD   82 (259)
T ss_dssp             TTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTT--SCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence            35678998887655 333333333 126788887 667776666666665544  4577888876431  22221110 0


Q ss_pred             CCCceeEEEEeC
Q 029764           94 NEGSFDYAFVDA  105 (188)
Q Consensus        94 ~~~~~D~i~id~  105 (188)
                      ..+..|.++..+
T Consensus        83 ~~g~id~lv~nA   94 (259)
T 3edm_A           83 KFGEIHGLVHVA   94 (259)
T ss_dssp             HHCSEEEEEECC
T ss_pred             HhCCCCEEEECC
Confidence            136899998764

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=88.06  E-value=1.9  Score=33.35  Aligned_cols=94  Identities=12%  Similarity=0.022  Sum_probs=55.2

Q ss_pred             CEEEEEcccchH--HHHHHHhhCCCC-------CEEEEEeCCch-----hHHHHHHHHHhc----C--CCCcEEEEEcch
Q 029764           22 KKTIEIGVFTGY--SLLLTALTIPED-------GQITAIDVNRE-----TYEIGLPIIKKA----G--VDHKINFIESEA   81 (188)
Q Consensus        22 ~~vLeiG~g~G~--~~~~la~~~~~~-------~~v~~iD~~~~-----~~~~a~~~~~~~----~--~~~~~~~~~~d~   81 (188)
                      .+|.=||+|.=.  .+..+++.   +       .+|+.+|.+++     ..+..++.....    +  +..++.. ..+.
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~---g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~   84 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGN---AAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVA-VPDV   84 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHH---HHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEE-ESSH
T ss_pred             CeEEEECCCHHHHHHHHHHHhc---CCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEE-EcCH
Confidence            478899986422  22233332   3       47999999887     555444321100    1  1122332 2333


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764           82 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        82 ~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      .+.   .       ...|+||+..........++.+.+.++++..++.
T Consensus        85 ~~~---~-------~~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~  122 (354)
T 1x0v_A           85 VQA---A-------EDADILIFVVPHQFIGKICDQLKGHLKANATGIS  122 (354)
T ss_dssp             HHH---H-------TTCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEE
T ss_pred             HHH---H-------cCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence            222   1       4689999987766777888888888888876654

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=88.00  E-value=6.3  Score=28.84  Aligned_cols=82  Identities=11%  Similarity=0.045  Sum_probs=49.1

Q ss_pred             HcCCCEEEEEccc-chHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHHh
Q 029764           18 LVNAKKTIEIGVF-TGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLL   89 (188)
Q Consensus        18 ~~~~~~vLeiG~g-~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~   89 (188)
                      ..++++||-.|++ +|..+..+++.+ ..+.+|+.++.+....+.+++..+..+   .+.++..|..+      .+....
T Consensus        11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~~~   87 (271)
T 3ek2_A           11 FLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFG---SELVFPCDVADDAQIDALFASLK   87 (271)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcC---CcEEEECCCCCHHHHHHHHHHHH
Confidence            3456789999964 233344444333 126799999988766666666555544   36677877543      222222


Q ss_pred             hcccCCCceeEEEEeC
Q 029764           90 KYSENEGSFDYAFVDA  105 (188)
Q Consensus        90 ~~~~~~~~~D~i~id~  105 (188)
                      +.   .+.+|+++..+
T Consensus        88 ~~---~g~id~lv~nA  100 (271)
T 3ek2_A           88 TH---WDSLDGLVHSI  100 (271)
T ss_dssp             HH---CSCEEEEEECC
T ss_pred             HH---cCCCCEEEECC
Confidence            22   46899998764

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=87.99  E-value=3.7  Score=30.57  Aligned_cols=81  Identities=11%  Similarity=0.128  Sum_probs=53.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHHhhc
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKY   91 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~   91 (188)
                      .+++.+|-.|.+.|- +..+|+.+ ..+.+|+.+|.+++.++.+.+.+...+  .++..+..|..+      .+.+..+ 
T Consensus         7 L~gKvalVTGas~GI-G~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~-   82 (255)
T 4g81_D            7 LTGKTALVTGSARGL-GFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKG--YDAHGVAFDVTDELAIEAAFSKLDA-   82 (255)
T ss_dssp             CTTCEEEETTCSSHH-HHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHH-
T ss_pred             CCCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHH-
Confidence            467888888877663 33333332 137899999999998888877777765  357777777543      2222322 


Q ss_pred             ccCCCceeEEEEeC
Q 029764           92 SENEGSFDYAFVDA  105 (188)
Q Consensus        92 ~~~~~~~D~i~id~  105 (188)
                        ..++.|+++-.+
T Consensus        83 --~~G~iDiLVNNA   94 (255)
T 4g81_D           83 --EGIHVDILINNA   94 (255)
T ss_dssp             --TTCCCCEEEECC
T ss_pred             --HCCCCcEEEECC
Confidence              357899998663

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=87.95  E-value=6.5  Score=29.03  Aligned_cols=80  Identities=14%  Similarity=0.144  Sum_probs=45.1

Q ss_pred             cCCCEEEEEccc-chHHHHH-HHhhCCCCCEEEEEeCCc-------------------hhHHHHHHHHHhcCCCCcEEEE
Q 029764           19 VNAKKTIEIGVF-TGYSLLL-TALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFI   77 (188)
Q Consensus        19 ~~~~~vLeiG~g-~G~~~~~-la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~   77 (188)
                      .+..+|+-+|+| .|...+. |+.. . -++++.+|.+.                   ...+.+.+.+...+-.-+++.+
T Consensus        26 l~~~~VlvvG~GglG~~va~~La~~-G-vg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~  103 (251)
T 1zud_1           26 LLDSQVLIIGLGGLGTPAALYLAGA-G-VGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTAL  103 (251)
T ss_dssp             HHTCEEEEECCSTTHHHHHHHHHHT-T-CSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred             HhcCcEEEEccCHHHHHHHHHHHHc-C-CCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEE
Confidence            345799999997 3443333 4332 2 36899998753                   3455666666665433345554


Q ss_pred             EcchH-HHHHHHhhcccCCCceeEEEEeCC
Q 029764           78 ESEAL-SVLDQLLKYSENEGSFDYAFVDAD  106 (188)
Q Consensus        78 ~~d~~-~~~~~~~~~~~~~~~~D~i~id~~  106 (188)
                      ..... +.+..+.      ..+|+|+...+
T Consensus       104 ~~~~~~~~~~~~~------~~~DvVi~~~d  127 (251)
T 1zud_1          104 QQRLTGEALKDAV------ARADVVLDCTD  127 (251)
T ss_dssp             CSCCCHHHHHHHH------HHCSEEEECCS
T ss_pred             eccCCHHHHHHHH------hcCCEEEECCC
Confidence            43322 2233332      46899986543

>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}

Probab=87.75  E-value=4  Score=27.07  Aligned_cols=68  Identities=16%  Similarity=0.251  Sum_probs=48.7

Q ss_pred             CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCcc--chHHHHHHHH
Q 029764           44 EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLM  118 (188)
Q Consensus        44 ~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~--~~~~~~~~~~  118 (188)
                      ++.+|..||-++......+..++..|+.. + ....+..+.+..+.     ...||+|++|...+  +-.++++.+.
T Consensus        11 k~~rILiVDD~~~~r~~l~~~L~~~G~~~-v-~~a~~g~~al~~~~-----~~~~DlillD~~MP~mdG~el~~~ir   80 (134)
T 3to5_A           11 KNMKILIVDDFSTMRRIVKNLLRDLGFNN-T-QEADDGLTALPMLK-----KGDFDFVVTDWNMPGMQGIDLLKNIR   80 (134)
T ss_dssp             TTCCEEEECSCHHHHHHHHHHHHHTTCCC-E-EEESSHHHHHHHHH-----HHCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHcCCcE-E-EEECCHHHHHHHHH-----hCCCCEEEEcCCCCCCCHHHHHHHHH
Confidence            35689999999999999999999988642 2 34566666555443     25799999997543  3456666664

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=87.72  E-value=5.5  Score=29.30  Aligned_cols=81  Identities=15%  Similarity=0.106  Sum_probs=52.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH------HHHHhhc
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKY   91 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~------~~~~~~~   91 (188)
                      ..++++|-.|++.|- +..+++.+ ..+.+|+.++.+++.++.+.+.+...+  .++.++..|..+.      +....+.
T Consensus         9 l~~k~vlVTGas~gI-G~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   85 (264)
T 3ucx_A            9 LTDKVVVISGVGPAL-GTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTG--RRALSVGTDITDDAQVAHLVDETMKA   85 (264)
T ss_dssp             TTTCEEEEESCCTTH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCcHH-HHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            456889988886553 33333322 126799999999988887777776654  4688888876431      2222222


Q ss_pred             ccCCCceeEEEEeC
Q 029764           92 SENEGSFDYAFVDA  105 (188)
Q Consensus        92 ~~~~~~~D~i~id~  105 (188)
                         .+.+|+++..+
T Consensus        86 ---~g~id~lv~nA   96 (264)
T 3ucx_A           86 ---YGRVDVVINNA   96 (264)
T ss_dssp             ---TSCCSEEEECC
T ss_pred             ---cCCCcEEEECC
Confidence               46899998764

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=87.69  E-value=6.2  Score=31.36  Aligned_cols=90  Identities=19%  Similarity=0.054  Sum_probs=53.1

Q ss_pred             CEEEEEcccchHHHHHHHhhCCC-C---CEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCC
Q 029764           22 KKTIEIGVFTGYSLLLTALTIPE-D---GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENE   95 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~~-~---~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~   95 (188)
                      ++|+-+|+  |..+..+++.+.. +   .+|+.++.+++..+...+.+...+ ..++..+..|..+  .+.++.++    
T Consensus         2 ~kVlIiGa--GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~-~~~~~~~~~D~~d~~~l~~~l~~----   74 (405)
T 4ina_A            2 AKVLQIGA--GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKG-YGEIDITTVDADSIEELVALINE----   74 (405)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTT-CCCCEEEECCTTCHHHHHHHHHH----
T ss_pred             CEEEEECC--CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhc-CCceEEEEecCCCHHHHHHHHHh----
Confidence            46888888  4566665554422 2   389999999887776666554432 1346777777643  33343321    


Q ss_pred             CceeEEEEeCCccchHHHHHHHH
Q 029764           96 GSFDYAFVDADKDNYCNYHERLM  118 (188)
Q Consensus        96 ~~~D~i~id~~~~~~~~~~~~~~  118 (188)
                      ...|+|+..........+.+.+.
T Consensus        75 ~~~DvVin~ag~~~~~~v~~a~l   97 (405)
T 4ina_A           75 VKPQIVLNIALPYQDLTIMEACL   97 (405)
T ss_dssp             HCCSEEEECSCGGGHHHHHHHHH
T ss_pred             hCCCEEEECCCcccChHHHHHHH
Confidence            24899987765443344444443

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=87.21  E-value=3.2  Score=30.99  Aligned_cols=82  Identities=15%  Similarity=0.168  Sum_probs=50.1

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH------HHHHhh
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLK   90 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~------~~~~~~   90 (188)
                      +..++++|-.|++.| .+..+++.+ ..+.+|+.++.+++..+...+.+...+  .++.++..|..+.      +....+
T Consensus        21 m~~~k~~lVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~   97 (279)
T 3sju_A           21 MSRPQTAFVTGVSSG-IGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAG--HDVDGSSCDVTSTDEVHAAVAAAVE   97 (279)
T ss_dssp             ----CEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence            445678998887655 333333333 126799999999888877777666544  4688888876431      222211


Q ss_pred             cccCCCceeEEEEeC
Q 029764           91 YSENEGSFDYAFVDA  105 (188)
Q Consensus        91 ~~~~~~~~D~i~id~  105 (188)
                      .   .+.+|+++..+
T Consensus        98 ~---~g~id~lv~nA  109 (279)
T 3sju_A           98 R---FGPIGILVNSA  109 (279)
T ss_dssp             H---HCSCCEEEECC
T ss_pred             H---cCCCcEEEECC
Confidence            1   36789998764

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=87.06  E-value=2.9  Score=31.57  Aligned_cols=34  Identities=9%  Similarity=0.099  Sum_probs=27.0

Q ss_pred             CceeEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764           96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      ..+|+||+.-........++.+.+.++++..++.
T Consensus        82 ~~~D~vil~vk~~~~~~v~~~i~~~l~~~~~iv~  115 (317)
T 2qyt_A           82 GTVDYILFCTKDYDMERGVAEIRPMIGQNTKILP  115 (317)
T ss_dssp             CCEEEEEECCSSSCHHHHHHHHGGGEEEEEEEEE
T ss_pred             CCCCEEEEecCcccHHHHHHHHHhhcCCCCEEEE
Confidence            5799999987666677888888888888776665

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=86.61  E-value=1.6  Score=35.24  Aligned_cols=106  Identities=17%  Similarity=0.200  Sum_probs=55.5

Q ss_pred             CCEEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhc-----ccC
Q 029764           21 AKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY-----SEN   94 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-----~~~   94 (188)
                      +..+--||+  |+.+..+|..+. .+-+|+++|.+++.++..++.     ..+   +..-...+.+.+....     ..+
T Consensus        11 ~~~~~ViGl--GyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g-----~~p---i~epgl~~ll~~~~~~g~l~~ttd   80 (431)
T 3ojo_A           11 GSKLTVVGL--GYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNG-----QIS---IEEPGLQEVYEEVLSSGKLKVSTT   80 (431)
T ss_dssp             -CEEEEECC--STTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTT-----CCS---SCCTTHHHHHHHHHHTTCEEEESS
T ss_pred             CCccEEEee--CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCC-----CCC---cCCCCHHHHHHhhcccCceEEeCc
Confidence            445666676  444444444332 156899999999988766542     111   1111111121110000     001


Q ss_pred             CCceeEEEEeCCcc------------chHHHHHHHHhccCcCeEEEEeccccCc
Q 029764           95 EGSFDYAFVDADKD------------NYCNYHERLMKLLKVGGIAVYDNTLWGG  136 (188)
Q Consensus        95 ~~~~D~i~id~~~~------------~~~~~~~~~~~~L~~gG~lv~~~~~~~g  136 (188)
                      ...-|+||+.-+.+            ......+.+.+.|++|.++|......+|
T Consensus        81 ~~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pg  134 (431)
T 3ojo_A           81 PEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPK  134 (431)
T ss_dssp             CCCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTT
T ss_pred             hhhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChh
Confidence            23578898863221            1344557778899999888776555433

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=86.47  E-value=1.5  Score=38.15  Aligned_cols=60  Identities=12%  Similarity=-0.116  Sum_probs=43.7

Q ss_pred             CEEEEEcccchHHHHHHHhhCCC-C---CEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029764           22 KKTIEIGVFTGYSLLLTALTIPE-D---GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   87 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~~-~---~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   87 (188)
                      .+|||+.||.|..+.-|..+... +   -.+.++|+++.+++..+.|+      +...+++.|..++.+.
T Consensus       213 ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh------p~~~~~~~di~~i~~~  276 (784)
T 4ft4_B          213 ATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH------PQTEVRNEKADEFLAL  276 (784)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC------TTSEEEESCHHHHHHH
T ss_pred             CeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC------CCCceecCcHHHhhhh
Confidence            47999999999988887664200 0   25789999999888887775      2356778888776543

>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}

Probab=86.44  E-value=4.5  Score=25.60  Aligned_cols=78  Identities=13%  Similarity=0.048  Sum_probs=50.7

Q ss_pred             CCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCcc--chHHHHHHHHhccC
Q 029764           45 DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLK  122 (188)
Q Consensus        45 ~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~--~~~~~~~~~~~~L~  122 (188)
                      ..+|..+|-++......++.+...|+.  +. ...+..+.+..+.     ...+|+|++|....  +..++++.+.+.-.
T Consensus         7 ~~~ilivdd~~~~~~~l~~~L~~~g~~--v~-~~~~~~~a~~~l~-----~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~   78 (130)
T 3eod_A            7 GKQILIVEDEQVFRSLLDSWFSSLGAT--TV-LAADGVDALELLG-----GFTPDLMICDIAMPRMNGLKLLEHIRNRGD   78 (130)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHHTTCE--EE-EESCHHHHHHHHT-----TCCCSEEEECCC-----CHHHHHHHHHTTC
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHhCCce--EE-EeCCHHHHHHHHh-----cCCCCEEEEecCCCCCCHHHHHHHHHhcCC
Confidence            568999999999999999988887742  32 3556666655542     46799999996432  33566666655433


Q ss_pred             cCeEEEEe
Q 029764          123 VGGIAVYD  130 (188)
Q Consensus       123 ~gG~lv~~  130 (188)
                      .--++++.
T Consensus        79 ~~~ii~~t   86 (130)
T 3eod_A           79 QTPVLVIS   86 (130)
T ss_dssp             CCCEEEEE
T ss_pred             CCCEEEEE
Confidence            33345543

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=86.35  E-value=10  Score=29.56  Aligned_cols=57  Identities=16%  Similarity=0.055  Sum_probs=34.4

Q ss_pred             CCCEEEEEcccc-hHHHH-HHHhhCCCCCEEEEEeCCc-------------------hhHHHHHHHHHhcCCCCcEEEEE
Q 029764           20 NAKKTIEIGVFT-GYSLL-LTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIE   78 (188)
Q Consensus        20 ~~~~vLeiG~g~-G~~~~-~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~   78 (188)
                      +..+|+-+|+|. |...+ .|+.. . -++++.+|.+.                   ...+.+++.+...+-.-+++.+.
T Consensus        33 ~~~~VlIvGaGGlGs~va~~La~a-G-Vg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~v~v~~~~  110 (340)
T 3rui_A           33 KNTKVLLLGAGTLGCYVSRALIAW-G-VRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVK  110 (340)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHT-T-CCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEEC
T ss_pred             hCCEEEEECCCHHHHHHHHHHHHc-C-CCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCCCCEEEEEe
Confidence            457899999973 44333 33332 2 47999998754                   34566777777655333344444

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=86.31  E-value=6.7  Score=28.34  Aligned_cols=83  Identities=13%  Similarity=0.123  Sum_probs=51.8

Q ss_pred             CCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcc-cCC
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-ENE   95 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~-~~~   95 (188)
                      +++++|-.|++.| .+..+++.+ ..+.+|+.++.+++..+...+.+...+  .++.++..|..+.  +..+.+.. ...
T Consensus         4 ~~k~vlITGas~g-IG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (247)
T 3lyl_A            4 NEKVALVTGASRG-IGFEVAHALASKGATVVGTATSQASAEKFENSMKEKG--FKARGLVLNISDIESIQNFFAEIKAEN   80 (247)
T ss_dssp             TTCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            4578888886544 444444333 126799999999988887777776654  3588888876431  22221110 124


Q ss_pred             CceeEEEEeC
Q 029764           96 GSFDYAFVDA  105 (188)
Q Consensus        96 ~~~D~i~id~  105 (188)
                      +.+|.++..+
T Consensus        81 ~~id~li~~A   90 (247)
T 3lyl_A           81 LAIDILVNNA   90 (247)
T ss_dssp             CCCSEEEECC
T ss_pred             CCCCEEEECC
Confidence            6799998764

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=86.30  E-value=8.2  Score=28.44  Aligned_cols=112  Identities=17%  Similarity=0.188  Sum_probs=61.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCC-chhHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcc-c
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVN-RETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-E   93 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~-~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~-~   93 (188)
                      ..++++|-.|++.| .+..+++.+ ..+.+|+.++.+ ++..+...+.+...+  .++.++..|..+.  +..+.+.. .
T Consensus        16 l~~k~~lVTGas~g-IG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~   92 (270)
T 3is3_A           16 LDGKVALVTGSGRG-IGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALG--SDAIAIKADIRQVPEIVKLFDQAVA   92 (270)
T ss_dssp             CTTCEEEESCTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            35678888887654 334444333 126788887764 455555555565544  4688888876431  22221110 0


Q ss_pred             CCCceeEEEEeCCc-----------cch-----------HHHHHHHHhccCcCeEEEEeccc
Q 029764           94 NEGSFDYAFVDADK-----------DNY-----------CNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        94 ~~~~~D~i~id~~~-----------~~~-----------~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      ..+..|+++..+..           +..           ....+.+.+.++++|.+|+-...
T Consensus        93 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~  154 (270)
T 3is3_A           93 HFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSN  154 (270)
T ss_dssp             HHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCT
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCc
Confidence            13578998865321           011           12345556788888887765443

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=86.10  E-value=5.5  Score=28.93  Aligned_cols=83  Identities=19%  Similarity=0.149  Sum_probs=51.8

Q ss_pred             CCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcc-cCC
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-ENE   95 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~-~~~   95 (188)
                      +++++|-.|+..| .+..+++.+ ..+.+|+.++.+++..+...+.+...+  .++.++..|..+.  +..+.+.. ...
T Consensus         8 ~~k~vlITGas~g-iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (253)
T 3qiv_A            8 ENKVGIVTGSGGG-IGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADG--GTAISVAVDVSDPESAKAMADRTLAEF   84 (253)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            4678888887544 444444433 126799999999988887777766544  4678888876532  22221110 012


Q ss_pred             CceeEEEEeC
Q 029764           96 GSFDYAFVDA  105 (188)
Q Consensus        96 ~~~D~i~id~  105 (188)
                      +.+|.++..+
T Consensus        85 g~id~li~~A   94 (253)
T 3qiv_A           85 GGIDYLVNNA   94 (253)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            5799998764

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=86.03  E-value=7.1  Score=29.43  Aligned_cols=89  Identities=7%  Similarity=0.020  Sum_probs=50.2

Q ss_pred             cCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           19 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        19 ~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      .++++|+=+|+|. |......+..+  +.+|+.+|.+++..+.++    ..+    ++....+  + +.++      ...
T Consensus       153 l~g~~v~IiG~G~iG~~~a~~l~~~--G~~V~~~dr~~~~~~~~~----~~g----~~~~~~~--~-l~~~------l~~  213 (293)
T 3d4o_A          153 IHGANVAVLGLGRVGMSVARKFAAL--GAKVKVGARESDLLARIA----EMG----MEPFHIS--K-AAQE------LRD  213 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHH----HTT----SEEEEGG--G-HHHH------TTT
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHH----HCC----CeecChh--h-HHHH------hcC
Confidence            4678999999852 33333333333  569999999886544332    233    2222211  1 2232      267


Q ss_pred             eeEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764           98 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        98 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      .|+|+...+.....   +.....+++|++++-
T Consensus       214 aDvVi~~~p~~~i~---~~~l~~mk~~~~lin  242 (293)
T 3d4o_A          214 VDVCINTIPALVVT---ANVLAEMPSHTFVID  242 (293)
T ss_dssp             CSEEEECCSSCCBC---HHHHHHSCTTCEEEE
T ss_pred             CCEEEECCChHHhC---HHHHHhcCCCCEEEE
Confidence            89999875432221   234567899887763

>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}

Probab=85.84  E-value=5  Score=25.51  Aligned_cols=76  Identities=20%  Similarity=0.110  Sum_probs=48.2

Q ss_pred             EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCc--cchHHHHHHHHhccCcC
Q 029764           47 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLKVG  124 (188)
Q Consensus        47 ~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~--~~~~~~~~~~~~~L~~g  124 (188)
                      +|..+|-++......++.+...++  .+.....+..+.+..+.     ...+|+|++|...  .+..++++.+.+. .++
T Consensus         3 ~ilivdd~~~~~~~l~~~L~~~g~--~v~~~~~~~~~a~~~~~-----~~~~dlii~d~~l~~~~g~~~~~~l~~~-~~~   74 (134)
T 3f6c_A            3 NAIIIDDHPLAIAAIRNLLIKNDI--EILAELTEGGSAVQRVE-----TLKPDIVIIDVDIPGVNGIQVLETLRKR-QYS   74 (134)
T ss_dssp             EEEEECCCHHHHHHHHHHHHHTTE--EEEEEESSSTTHHHHHH-----HHCCSEEEEETTCSSSCHHHHHHHHHHT-TCC
T ss_pred             EEEEEcCCHHHHHHHHHHHhhCCc--EEEEEcCCHHHHHHHHH-----hcCCCEEEEecCCCCCChHHHHHHHHhc-CCC
Confidence            688899999999999999888763  22223445444444432     2579999999643  3345666777554 344


Q ss_pred             e-EEEEe
Q 029764          125 G-IAVYD  130 (188)
Q Consensus       125 G-~lv~~  130 (188)
                      . ++++.
T Consensus        75 ~~ii~~s   81 (134)
T 3f6c_A           75 GIIIIVS   81 (134)
T ss_dssp             SEEEEEE
T ss_pred             CeEEEEe
Confidence            3 44443

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=85.74  E-value=5.9  Score=28.91  Aligned_cols=82  Identities=12%  Similarity=0.081  Sum_probs=50.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch--HH------HHHHHh
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA--LS------VLDQLL   89 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~--~~------~~~~~~   89 (188)
                      .+++++|-.|++.| .+..+++.+ ..+.+|+.++.+++..+.+.+.+...+. .++.++..|.  .+      .+....
T Consensus        10 l~~k~vlVTGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~   87 (252)
T 3f1l_A           10 LNDRIILVTGASDG-IGREAAMTYARYGATVILLGRNEEKLRQVASHINEETG-RQPQWFILDLLTCTSENCQQLAQRIA   87 (252)
T ss_dssp             TTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHS-CCCEEEECCTTTCCHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcC-CCceEEEEecccCCHHHHHHHHHHHH
Confidence            35678888887554 334444333 1367999999998888777666655432 2467777776  21      222222


Q ss_pred             hcccCCCceeEEEEeC
Q 029764           90 KYSENEGSFDYAFVDA  105 (188)
Q Consensus        90 ~~~~~~~~~D~i~id~  105 (188)
                      +.   .+.+|+++..+
T Consensus        88 ~~---~g~id~lv~nA  100 (252)
T 3f1l_A           88 VN---YPRLDGVLHNA  100 (252)
T ss_dssp             HH---CSCCSEEEECC
T ss_pred             Hh---CCCCCEEEECC
Confidence            22   46899998764

>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}

Probab=85.55  E-value=5.8  Score=25.98  Aligned_cols=79  Identities=9%  Similarity=-0.005  Sum_probs=51.1

Q ss_pred             CCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCc--cchHHHHHHHHhccC
Q 029764           45 DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLK  122 (188)
Q Consensus        45 ~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~--~~~~~~~~~~~~~L~  122 (188)
                      ..+|..+|-++......++.+...+... +-....+..+.+..+.     ...+|+|++|...  .+..++++.+.+. .
T Consensus        15 ~~~iLivdd~~~~~~~l~~~L~~~~~~~-~v~~~~~~~~a~~~l~-----~~~~dlii~d~~l~~~~g~~~~~~l~~~-~   87 (152)
T 3eul_A           15 KVRVVVGDDHPLFREGVVRALSLSGSVN-VVGEADDGAAALELIK-----AHLPDVALLDYRMPGMDGAQVAAAVRSY-E   87 (152)
T ss_dssp             CEEEEEECSSHHHHHHHHHHHHHHSSEE-EEEEESSHHHHHHHHH-----HHCCSEEEEETTCSSSCHHHHHHHHHHT-T
T ss_pred             eEEEEEEcCCHHHHHHHHHHHhhCCCeE-EEEEeCCHHHHHHHHH-----hcCCCEEEEeCCCCCCCHHHHHHHHHhc-C
Confidence            5689999999999999999888876311 2224556655555443     2579999999643  3345666766554 3


Q ss_pred             cCe-EEEEe
Q 029764          123 VGG-IAVYD  130 (188)
Q Consensus       123 ~gG-~lv~~  130 (188)
                      +.. ++++.
T Consensus        88 ~~~~ii~~s   96 (152)
T 3eul_A           88 LPTRVLLIS   96 (152)
T ss_dssp             CSCEEEEEE
T ss_pred             CCCeEEEEE
Confidence            443 45444

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=85.52  E-value=5.1  Score=29.40  Aligned_cols=83  Identities=16%  Similarity=0.193  Sum_probs=51.4

Q ss_pred             cCCCEEEEEcc-cc--hH-HHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcc
Q 029764           19 VNAKKTIEIGV-FT--GY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS   92 (188)
Q Consensus        19 ~~~~~vLeiG~-g~--G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~   92 (188)
                      .+++++|-.|+ |+  |. .+..+++.   +.+|+.++.+++..+...+.+...+ ..++.++..|..+.  +..+.+..
T Consensus        20 l~~k~vlITGasg~GIG~~~a~~l~~~---G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~   95 (266)
T 3o38_A           20 LKGKVVLVTAAAGTGIGSTTARRALLE---GADVVISDYHERRLGETRDQLADLG-LGRVEAVVCDVTSTEAVDALITQT   95 (266)
T ss_dssp             TTTCEEEESSCSSSSHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHTTC-SSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHC---CCEEEEecCCHHHHHHHHHHHHhcC-CCceEEEEeCCCCHHHHHHHHHHH
Confidence            35678898886 44  33 33334443   6799999999988877777775543 24688888886431  22221110


Q ss_pred             -cCCCceeEEEEeC
Q 029764           93 -ENEGSFDYAFVDA  105 (188)
Q Consensus        93 -~~~~~~D~i~id~  105 (188)
                       ...+.+|+++..+
T Consensus        96 ~~~~g~id~li~~A  109 (266)
T 3o38_A           96 VEKAGRLDVLVNNA  109 (266)
T ss_dssp             HHHHSCCCEEEECC
T ss_pred             HHHhCCCcEEEECC
Confidence             0135789998764

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=85.46  E-value=5.9  Score=29.48  Aligned_cols=84  Identities=19%  Similarity=0.207  Sum_probs=52.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcc-cC
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-EN   94 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~-~~   94 (188)
                      ..++++|-.|++.| .+..+++.+ ..+.+|+.++.+++..+...+.+...+  .++.++..|..+.  +..+.+.. ..
T Consensus        30 l~gk~~lVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~  106 (276)
T 3r1i_A           30 LSGKRALITGASTG-IGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVG--GKALPIRCDVTQPDQVRGMLDQMTGE  106 (276)
T ss_dssp             CTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            35678888887654 333433333 126799999999988888777776654  3577888876431  22221110 01


Q ss_pred             CCceeEEEEeC
Q 029764           95 EGSFDYAFVDA  105 (188)
Q Consensus        95 ~~~~D~i~id~  105 (188)
                      .+.+|+++..+
T Consensus       107 ~g~iD~lvnnA  117 (276)
T 3r1i_A          107 LGGIDIAVCNA  117 (276)
T ss_dssp             HSCCSEEEECC
T ss_pred             cCCCCEEEECC
Confidence            35799998764

>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}

Probab=85.40  E-value=6.1  Score=26.15  Aligned_cols=80  Identities=10%  Similarity=0.005  Sum_probs=51.1

Q ss_pred             CEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCc--cchHHHHHHHHhccCc
Q 029764           46 GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLKV  123 (188)
Q Consensus        46 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~--~~~~~~~~~~~~~L~~  123 (188)
                      .+|..+|-++......++.+...++  .+.....+..+.+..+...   ...+|+|++|...  .+..++++.+.+.-..
T Consensus        37 ~~Ilivdd~~~~~~~l~~~L~~~g~--~v~~~~~~~~~al~~l~~~---~~~~dliilD~~l~~~~g~~~~~~lr~~~~~  111 (157)
T 3hzh_A           37 FNVLIVDDSVFTVKQLTQIFTSEGF--NIIDTAADGEEAVIKYKNH---YPNIDIVTLXITMPKMDGITCLSNIMEFDKN  111 (157)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHH---GGGCCEEEECSSCSSSCHHHHHHHHHHHCTT
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHhc---CCCCCEEEEeccCCCccHHHHHHHHHhhCCC
Confidence            3799999999999999999988764  2322456666655544321   1279999999643  2345666666554333


Q ss_pred             CeEEEEe
Q 029764          124 GGIAVYD  130 (188)
Q Consensus       124 gG~lv~~  130 (188)
                      --++++.
T Consensus       112 ~~ii~ls  118 (157)
T 3hzh_A          112 ARVIMIS  118 (157)
T ss_dssp             CCEEEEE
T ss_pred             CcEEEEe
Confidence            3455554

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=85.36  E-value=9  Score=28.03  Aligned_cols=83  Identities=16%  Similarity=0.148  Sum_probs=44.1

Q ss_pred             CCCEEEEEccc-chHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcc-cC
Q 029764           20 NAKKTIEIGVF-TGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-EN   94 (188)
Q Consensus        20 ~~~~vLeiG~g-~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~-~~   94 (188)
                      .++++|-.|++ +|..+..+++.+. .+.+|+.++.+++..+.+++..+..+   .+.++..|..+.  +..+.+.. ..
T Consensus         7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~~   83 (261)
T 2wyu_A            7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALG---GALLFRADVTQDEELDALFAGVKEA   83 (261)
T ss_dssp             TTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHHHHTT---CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC---CcEEEECCCCCHHHHHHHHHHHHHH
Confidence            45789999975 1444444443331 26789999988763333333222222   266777775431  22221110 01


Q ss_pred             CCceeEEEEeC
Q 029764           95 EGSFDYAFVDA  105 (188)
Q Consensus        95 ~~~~D~i~id~  105 (188)
                      .+.+|+++..+
T Consensus        84 ~g~iD~lv~~A   94 (261)
T 2wyu_A           84 FGGLDYLVHAI   94 (261)
T ss_dssp             HSSEEEEEECC
T ss_pred             cCCCCEEEECC
Confidence            25799998764

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=85.29  E-value=8.6  Score=28.10  Aligned_cols=83  Identities=13%  Similarity=0.108  Sum_probs=48.4

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCC-CCCEEEEEeC-CchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcc-cC
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDV-NRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYS-EN   94 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~-~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~-~~   94 (188)
                      ++++||-.|+ +|..+..+++.+. .+.+|+.++. +++..+...+.+...+  .++.++.+|..+  .+..+.+.. ..
T Consensus        20 ~~k~vlItGa-sggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   96 (274)
T 1ja9_A           20 AGKVALTTGA-GRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISKPSEVVALFDKAVSH   96 (274)
T ss_dssp             TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            4567887776 4555555555442 2678999888 7666665555555544  457888887653  222221100 01


Q ss_pred             CCceeEEEEeC
Q 029764           95 EGSFDYAFVDA  105 (188)
Q Consensus        95 ~~~~D~i~id~  105 (188)
                      .+.+|.++..+
T Consensus        97 ~~~~d~vi~~A  107 (274)
T 1ja9_A           97 FGGLDFVMSNS  107 (274)
T ss_dssp             HSCEEEEECCC
T ss_pred             cCCCCEEEECC
Confidence            25789998653

>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}

Probab=85.12  E-value=5.6  Score=25.44  Aligned_cols=78  Identities=12%  Similarity=-0.098  Sum_probs=51.5

Q ss_pred             CCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCc---cchHHHHHHHHhcc
Q 029764           45 DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---DNYCNYHERLMKLL  121 (188)
Q Consensus        45 ~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~---~~~~~~~~~~~~~L  121 (188)
                      ..+|..+|-++......+..+...|+  .+.....+..+.+..+.     ...+|+|++|...   .+..++++.+.+. 
T Consensus         9 ~~~iLivdd~~~~~~~l~~~L~~~g~--~v~~~~~~~~~a~~~~~-----~~~~dlii~d~~~~~~~~g~~~~~~l~~~-   80 (140)
T 3cg0_A            9 LPGVLIVEDGRLAAATLRIQLESLGY--DVLGVFDNGEEAVRCAP-----DLRPDIALVDIMLCGALDGVETAARLAAG-   80 (140)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHH-----HHCCSEEEEESSCCSSSCHHHHHHHHHHH-
T ss_pred             CceEEEEECCHHHHHHHHHHHHHCCC--eeEEEECCHHHHHHHHH-----hCCCCEEEEecCCCCCCCHHHHHHHHHhC-
Confidence            46899999999999999998888764  23323566655555443     2469999999643   2445667777655 


Q ss_pred             CcCeEEEEe
Q 029764          122 KVGGIAVYD  130 (188)
Q Consensus       122 ~~gG~lv~~  130 (188)
                      ..--++++.
T Consensus        81 ~~~~ii~ls   89 (140)
T 3cg0_A           81 CNLPIIFIT   89 (140)
T ss_dssp             SCCCEEEEE
T ss_pred             CCCCEEEEe
Confidence            333455554

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=85.12  E-value=3.1  Score=31.87  Aligned_cols=87  Identities=14%  Similarity=0.016  Sum_probs=53.2

Q ss_pred             CEEEEEcccchHHHHHHHhhCC-CC----CEEEEEeCCch--hHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           22 KKTIEIGVFTGYSLLLTALTIP-ED----GQITAIDVNRE--TYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~-~~----~~v~~iD~~~~--~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      .+|.=||+|  ..+..++..+. .+    ..|+..|.+++  ..+.++    ..|    +.+ ..+..+.+         
T Consensus        23 mkI~iIG~G--~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~----~~G----~~~-~~~~~e~~---------   82 (322)
T 2izz_A           23 MSVGFIGAG--QLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALR----KMG----VKL-TPHNKETV---------   82 (322)
T ss_dssp             CCEEEESCS--HHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHH----HHT----CEE-ESCHHHHH---------
T ss_pred             CEEEEECCC--HHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHH----HcC----CEE-eCChHHHh---------
Confidence            468889985  44444333331 13    47899998875  444443    223    332 23333322         


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                       ...|+||+........+.++.+.+.++++.+++.
T Consensus        83 -~~aDvVilav~~~~~~~vl~~l~~~l~~~~ivvs  116 (322)
T 2izz_A           83 -QHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVS  116 (322)
T ss_dssp             -HHCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             -ccCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEE
Confidence             3579999987777777888888888888776554

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=85.08  E-value=2.4  Score=27.63  Aligned_cols=93  Identities=18%  Similarity=0.156  Sum_probs=50.7

Q ss_pred             CCEEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCc
Q 029764           21 AKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGS   97 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~   97 (188)
                      .++|+-+|+  |..+..++..+. .+.+|+.+|.+++..+.+++    .+    ...+.+|..+  .+...     ....
T Consensus         6 ~~~v~I~G~--G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~----~~----~~~~~~d~~~~~~l~~~-----~~~~   70 (144)
T 2hmt_A            6 NKQFAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS----YA----THAVIANATEENELLSL-----GIRN   70 (144)
T ss_dssp             CCSEEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTT----TC----SEEEECCTTCHHHHHTT-----TGGG
T ss_pred             CCcEEEECC--CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----hC----CEEEEeCCCCHHHHHhc-----CCCC
Confidence            457899887  666666555442 25679999998765443221    12    3456666543  22221     1257


Q ss_pred             eeEEEEeCCcc-chHHHHHHHHhccCcCeEEEE
Q 029764           98 FDYAFVDADKD-NYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        98 ~D~i~id~~~~-~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      +|+|++..... ..........+.+.+. .+++
T Consensus        71 ~d~vi~~~~~~~~~~~~~~~~~~~~~~~-~ii~  102 (144)
T 2hmt_A           71 FEYVIVAIGANIQASTLTTLLLKELDIP-NIWV  102 (144)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHHTTCS-EEEE
T ss_pred             CCEEEECCCCchHHHHHHHHHHHHcCCC-eEEE
Confidence            89999875432 2222333344555665 4443

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=85.07  E-value=5.5  Score=29.25  Aligned_cols=84  Identities=11%  Similarity=0.015  Sum_probs=52.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcc-cC
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-EN   94 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~-~~   94 (188)
                      .+++++|-.|++. ..+..+++.+ ..+.+|+.++.+++..+...+.+...+  .++.++..|..+.  +..+.+.. ..
T Consensus        27 l~~k~vlITGas~-gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~  103 (262)
T 3rkr_A           27 LSGQVAVVTGASR-GIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAG--GEAESHACDLSHSDAIAAFATGVLAA  103 (262)
T ss_dssp             TTTCEEEESSTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhC--CceeEEEecCCCHHHHHHHHHHHHHh
Confidence            3567888888654 4444444433 236799999999988887777776654  4688888876431  22211110 01


Q ss_pred             CCceeEEEEeC
Q 029764           95 EGSFDYAFVDA  105 (188)
Q Consensus        95 ~~~~D~i~id~  105 (188)
                      .+.+|.++..+
T Consensus       104 ~g~id~lv~~A  114 (262)
T 3rkr_A          104 HGRCDVLVNNA  114 (262)
T ss_dssp             HSCCSEEEECC
T ss_pred             cCCCCEEEECC
Confidence            35789998764

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=85.06  E-value=9.8  Score=28.20  Aligned_cols=80  Identities=15%  Similarity=0.129  Sum_probs=45.6

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchh-HHHHHHHHHhcCCCCcEEEEEcchHH------HHHHHhhc
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRET-YEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKY   91 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~-~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~   91 (188)
                      +++++|-.|++. ..+..+++.+. .+.+|+.++.+++. .+.+.+.+...+  .++.++..|..+      .+....+.
T Consensus        28 ~~k~vlVTGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~  104 (283)
T 1g0o_A           28 EGKVALVTGAGR-GIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVKI  104 (283)
T ss_dssp             TTCEEEETTTTS-HHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            456788777654 44455444432 36789999887643 344444444443  357788877543      11222111


Q ss_pred             ccCCCceeEEEEeC
Q 029764           92 SENEGSFDYAFVDA  105 (188)
Q Consensus        92 ~~~~~~~D~i~id~  105 (188)
                         .+.+|+++..+
T Consensus       105 ---~g~iD~lv~~A  115 (283)
T 1g0o_A          105 ---FGKLDIVCSNS  115 (283)
T ss_dssp             ---HSCCCEEEECC
T ss_pred             ---cCCCCEEEECC
Confidence               25789998764

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=85.05  E-value=9.4  Score=28.41  Aligned_cols=90  Identities=17%  Similarity=0.134  Sum_probs=52.2

Q ss_pred             CCEEEEEcccc-hH-HHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           21 AKKTIEIGVFT-GY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        21 ~~~vLeiG~g~-G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      ..+|.=||+|. |. .+..++..-. +.+|+++|.+++..+.+++    .+...  . ...+..+.          ....
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~-~~~V~~~d~~~~~~~~~~~----~g~~~--~-~~~~~~~~----------~~~a   67 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHP-HYKIVGYNRSDRSRDIALE----RGIVD--E-ATADFKVF----------AALA   67 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCT-TSEEEEECSSHHHHHHHHH----TTSCS--E-EESCTTTT----------GGGC
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCC-CcEEEEEcCCHHHHHHHHH----cCCcc--c-ccCCHHHh----------hcCC
Confidence            35788899864 22 2222333211 4589999999887665543    33211  1 12222111          1357


Q ss_pred             eEEEEeCCccchHHHHHHHHhc-cCcCeEEE
Q 029764           99 DYAFVDADKDNYCNYHERLMKL-LKVGGIAV  128 (188)
Q Consensus        99 D~i~id~~~~~~~~~~~~~~~~-L~~gG~lv  128 (188)
                      |+|++..........++.+.+. ++++.+++
T Consensus        68 DvVilavp~~~~~~v~~~l~~~~l~~~~ivi   98 (290)
T 3b1f_A           68 DVIILAVPIKKTIDFIKILADLDLKEDVIIT   98 (290)
T ss_dssp             SEEEECSCHHHHHHHHHHHHTSCCCTTCEEE
T ss_pred             CEEEEcCCHHHHHHHHHHHHhcCCCCCCEEE
Confidence            8999877666667777777777 88776555

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=84.97  E-value=3.4  Score=30.89  Aligned_cols=86  Identities=9%  Similarity=0.096  Sum_probs=52.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH---HHHHhhcc-c
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV---LDQLLKYS-E   93 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~~-~   93 (188)
                      .+++++|-.|++.| .+..+++.+ ..+.+|+.++.+++..+.+.+.+...+ ..++.++..|..+.   +..+.+.. .
T Consensus        10 ~~~k~vlITGas~G-IG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~v~~~~~~~~~   87 (311)
T 3o26_A           10 TKRRCAVVTGGNKG-IGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSN-HENVVFHQLDVTDPIATMSSLADFIKT   87 (311)
T ss_dssp             --CCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT-CCSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCcEEEEecCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CCceEEEEccCCCcHHHHHHHHHHHHH
Confidence            35678888887644 444444433 236799999999888777777666544 24688888776432   22221100 0


Q ss_pred             CCCceeEEEEeCC
Q 029764           94 NEGSFDYAFVDAD  106 (188)
Q Consensus        94 ~~~~~D~i~id~~  106 (188)
                      ..+.+|+++..+.
T Consensus        88 ~~g~iD~lv~nAg  100 (311)
T 3o26_A           88 HFGKLDILVNNAG  100 (311)
T ss_dssp             HHSSCCEEEECCC
T ss_pred             hCCCCCEEEECCc
Confidence            1358999998754

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=84.96  E-value=9.8  Score=28.30  Aligned_cols=83  Identities=10%  Similarity=0.033  Sum_probs=47.3

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCc-hhHHHHHHHHH-hcCCCCcEEEEEcchHH------HHHHHhh
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNR-ETYEIGLPIIK-KAGVDHKINFIESEALS------VLDQLLK   90 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~-~~~~~a~~~~~-~~~~~~~~~~~~~d~~~------~~~~~~~   90 (188)
                      .++++|-.|++.| .+..+++.+. .+.+|+.++.++ +..+.+.+.+. ..+  .++.++..|..+      .+..+.+
T Consensus        22 ~~k~~lVTGas~g-IG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~--~~~~~~~~Dv~~~~~~~~~v~~~~~   98 (288)
T 2x9g_A           22 EAPAAVVTGAAKR-IGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERS--NTAVVCQADLTNSNVLPASCEEIIN   98 (288)
T ss_dssp             CCCEEEETTCSSH-HHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHST--TCEEEEECCCSCSTTHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhcC--CceEEEEeecCCccCCHHHHHHHHH
Confidence            4578888886544 4444443331 267999999987 66665555554 333  457788777543      1222211


Q ss_pred             cc-cCCCceeEEEEeC
Q 029764           91 YS-ENEGSFDYAFVDA  105 (188)
Q Consensus        91 ~~-~~~~~~D~i~id~  105 (188)
                      .. ...+.+|+++..+
T Consensus        99 ~~~~~~g~iD~lvnnA  114 (288)
T 2x9g_A           99 SCFRAFGRCDVLVNNA  114 (288)
T ss_dssp             HHHHHHSCCCEEEECC
T ss_pred             HHHHhcCCCCEEEECC
Confidence            00 0135789998764

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=84.93  E-value=7.7  Score=31.62  Aligned_cols=100  Identities=16%  Similarity=0.139  Sum_probs=55.9

Q ss_pred             CEEEEEcccc-hH-HHHHHHhhCCCCCEEEEEeCCchhHHHHHHH------------HHhcCCCCcEEEEEcchHHHHHH
Q 029764           22 KKTIEIGVFT-GY-SLLLTALTIPEDGQITAIDVNRETYEIGLPI------------IKKAGVDHKINFIESEALSVLDQ   87 (188)
Q Consensus        22 ~~vLeiG~g~-G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~------------~~~~~~~~~~~~~~~d~~~~~~~   87 (188)
                      .+|.-||+|. |. .+..+++..+ +.+|+++|.+++.++..++.            +... ...++.+ ..|..+.+  
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~-g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~-~~~~l~~-t~~~~~~~--   84 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCP-HITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAA-RGRNLFF-SSDIPKAI--   84 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCT-TSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHH-BTTTEEE-ESCHHHHH--
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCC-CCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHh-hcCCEEE-ECCHHHHh--
Confidence            4788899863 22 3334444422 46899999999877655431            0000 0112222 22322221  


Q ss_pred             HhhcccCCCceeEEEEeCCc-c--------------chHHHHHHHHhccCcCeEEEEecccc
Q 029764           88 LLKYSENEGSFDYAFVDADK-D--------------NYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        88 ~~~~~~~~~~~D~i~id~~~-~--------------~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                              ...|+||+.... .              .....++.+.+.+++|.++|......
T Consensus        85 --------~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~  138 (481)
T 2o3j_A           85 --------AEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVP  138 (481)
T ss_dssp             --------HHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCCC
T ss_pred             --------hcCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence                    347899987321 1              14566777888899988777644443

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=84.75  E-value=3  Score=31.15  Aligned_cols=84  Identities=12%  Similarity=0.096  Sum_probs=51.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCC
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENE   95 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~   95 (188)
                      ..++++|-.|++.| .+..+++.+ ..+.+|+.++.+++..+.+.+.+...+  .++.++..|..+  ....+.+.....
T Consensus        31 l~gk~~lVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~  107 (275)
T 4imr_A           31 LRGRTALVTGSSRG-IGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASG--GTAQELAGDLSEAGAGTDLIERAEAI  107 (275)
T ss_dssp             CTTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTT--CCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEecCCCHHHHHHHHHHHHHh
Confidence            45678888886544 344444333 136799999999988877777766644  468888887643  122221110012


Q ss_pred             CceeEEEEeC
Q 029764           96 GSFDYAFVDA  105 (188)
Q Consensus        96 ~~~D~i~id~  105 (188)
                      +.+|+++..+
T Consensus       108 g~iD~lvnnA  117 (275)
T 4imr_A          108 APVDILVINA  117 (275)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            6799998764

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=84.74  E-value=5.9  Score=29.72  Aligned_cols=94  Identities=10%  Similarity=-0.027  Sum_probs=54.5

Q ss_pred             CEEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE--------cchHHHHHHHhhcc
Q 029764           22 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--------SEALSVLDQLLKYS   92 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~--------~d~~~~~~~~~~~~   92 (188)
                      .+|.=||+|  ..+..++..+. .+.+|+.+|.+++.++..++.    +.    ....        -+..+. .+..+  
T Consensus         4 m~i~iiG~G--~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~----g~----~~~~~~~~~~~~~~~~~~-~~~~~--   70 (316)
T 2ew2_A            4 MKIAIAGAG--AMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKN----GL----IADFNGEEVVANLPIFSP-EEIDH--   70 (316)
T ss_dssp             CEEEEECCS--HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH----CE----EEEETTEEEEECCCEECG-GGCCT--
T ss_pred             CeEEEECcC--HHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhC----CE----EEEeCCCeeEecceeecc-hhhcc--
Confidence            468888885  43334443331 156899999998876655543    21    1111        000000 01100  


Q ss_pred             cCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764           93 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        93 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                       .....|+||+..........++.+.+.++++..++.
T Consensus        71 -~~~~~d~vi~~v~~~~~~~v~~~l~~~l~~~~~iv~  106 (316)
T 2ew2_A           71 -QNEQVDLIIALTKAQQLDAMFKAIQPMITEKTYVLC  106 (316)
T ss_dssp             -TSCCCSEEEECSCHHHHHHHHHHHGGGCCTTCEEEE
T ss_pred             -cCCCCCEEEEEeccccHHHHHHHHHHhcCCCCEEEE
Confidence             012789999987666667788888888888877665

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=84.73  E-value=8.7  Score=29.78  Aligned_cols=72  Identities=15%  Similarity=0.081  Sum_probs=40.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhC---------CCCCEEEE-EeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTI---------PEDGQITA-IDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   88 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~---------~~~~~v~~-iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   88 (188)
                      .++.+|-=||||  ..+...+..+         .++.++++ +|.+++..+.+.+.+   +.+    -.-.|..+.+.  
T Consensus        23 MkkirvgiIG~G--~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~---g~~----~~y~d~~ell~--   91 (393)
T 4fb5_A           23 MKPLGIGLIGTG--YMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEF---GFE----KATADWRALIA--   91 (393)
T ss_dssp             -CCCEEEEECCS--HHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHH---TCS----EEESCHHHHHH--
T ss_pred             CCCccEEEEcCC--HHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHh---CCC----eecCCHHHHhc--
Confidence            356799999996  3333222211         12567666 588888766555443   432    23456655554  


Q ss_pred             hhcccCCCceeEEEEeCCc
Q 029764           89 LKYSENEGSFDYAFVDADK  107 (188)
Q Consensus        89 ~~~~~~~~~~D~i~id~~~  107 (188)
                            ...+|+|++..+.
T Consensus        92 ------~~~iDaV~IatP~  104 (393)
T 4fb5_A           92 ------DPEVDVVSVTTPN  104 (393)
T ss_dssp             ------CTTCCEEEECSCG
T ss_pred             ------CCCCcEEEECCCh
Confidence                  3689999987543

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=84.71  E-value=11  Score=31.92  Aligned_cols=58  Identities=16%  Similarity=0.066  Sum_probs=35.9

Q ss_pred             cCCCEEEEEcccc-hHHHHH-HHhhCCCCCEEEEEeCCc-------------------hhHHHHHHHHHhcCCCCcEEEE
Q 029764           19 VNAKKTIEIGVFT-GYSLLL-TALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFI   77 (188)
Q Consensus        19 ~~~~~vLeiG~g~-G~~~~~-la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~   77 (188)
                      .+..+|+-+|||. |...+. |+.. . -++++.+|.+.                   ...+.+++.+.+.+-.-+++.+
T Consensus       324 L~~arVLIVGaGGLGs~vA~~La~a-G-VG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iNP~V~v~~~  401 (615)
T 4gsl_A          324 IKNTKVLLLGAGTLGCYVSRALIAW-G-VRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGV  401 (615)
T ss_dssp             HHTCEEEEECCSHHHHHHHHHHHHT-T-CCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEE
T ss_pred             HhCCeEEEECCCHHHHHHHHHHHHc-C-CCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhCCCcEEEEe
Confidence            3456899999973 443333 4432 2 47999999865                   3456677777776533345544


Q ss_pred             E
Q 029764           78 E   78 (188)
Q Consensus        78 ~   78 (188)
                      .
T Consensus       402 ~  402 (615)
T 4gsl_A          402 K  402 (615)
T ss_dssp             C
T ss_pred             e
Confidence            4

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=84.62  E-value=5.5  Score=29.52  Aligned_cols=83  Identities=14%  Similarity=0.019  Sum_probs=50.7

Q ss_pred             CCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcc-cCC
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYS-ENE   95 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~-~~~   95 (188)
                      .++++|-.|++.| .+..+++.+ ..+.+|+.++.+++.++.+.+.+...+  .++.++..|..+  .+..+.+.. ...
T Consensus         3 ~~k~~lVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   79 (264)
T 3tfo_A            3 MDKVILITGASGG-IGEGIARELGVAGAKILLGARRQARIEAIATEIRDAG--GTALAQVLDVTDRHSVAAFAQAAVDTW   79 (264)
T ss_dssp             TTCEEEESSTTSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCccH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4578888887654 333333333 136799999999988887777776654  457778877643  122221110 013


Q ss_pred             CceeEEEEeC
Q 029764           96 GSFDYAFVDA  105 (188)
Q Consensus        96 ~~~D~i~id~  105 (188)
                      +..|+++..+
T Consensus        80 g~iD~lVnnA   89 (264)
T 3tfo_A           80 GRIDVLVNNA   89 (264)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            6799998764

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=84.53  E-value=5.1  Score=29.28  Aligned_cols=83  Identities=12%  Similarity=0.087  Sum_probs=51.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhcCCC-CcEEEEEcchHH------HHHHHhh
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALS------VLDQLLK   90 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~------~~~~~~~   90 (188)
                      ..++++|-.|++.| .+..+++.+. .+.+|+.++.+++..+.+.+.+...... .++.++..|..+      .+....+
T Consensus         5 ~~~k~~lVTGas~G-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   83 (250)
T 3nyw_A            5 KQKGLAIITGASQG-IGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQ   83 (250)
T ss_dssp             CCCCEEEEESTTSH-HHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHH
Confidence            35678888887655 3333333221 2679999999998887777766654222 457788877643      1222221


Q ss_pred             cccCCCceeEEEEeC
Q 029764           91 YSENEGSFDYAFVDA  105 (188)
Q Consensus        91 ~~~~~~~~D~i~id~  105 (188)
                      .   .+.+|+++..+
T Consensus        84 ~---~g~iD~lvnnA   95 (250)
T 3nyw_A           84 K---YGAVDILVNAA   95 (250)
T ss_dssp             H---HCCEEEEEECC
T ss_pred             h---cCCCCEEEECC
Confidence            1   36899998764

>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}

Probab=84.28  E-value=6.3  Score=25.33  Aligned_cols=79  Identities=10%  Similarity=0.006  Sum_probs=52.4

Q ss_pred             CCEEEEEeCCchhHHHHHHHHHh-cCCCCcEEEEEcchHHHHHHHhhcccCC-CceeEEEEeCCcc---chHHHHHHHHh
Q 029764           45 DGQITAIDVNRETYEIGLPIIKK-AGVDHKINFIESEALSVLDQLLKYSENE-GSFDYAFVDADKD---NYCNYHERLMK  119 (188)
Q Consensus        45 ~~~v~~iD~~~~~~~~a~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~D~i~id~~~~---~~~~~~~~~~~  119 (188)
                      ..+|..+|-++......++.+.. .++  .+. ...+..+.+..+.     . ..+|+|++|....   +..++++.+.+
T Consensus         4 ~~~ilivdd~~~~~~~l~~~L~~~~~~--~v~-~~~~~~~a~~~l~-----~~~~~dlvi~D~~l~~~~~g~~~~~~l~~   75 (140)
T 3lua_A            4 DGTVLLIDYFEYEREKTKIIFDNIGEY--DFI-EVENLKKFYSIFK-----DLDSITLIIMDIAFPVEKEGLEVLSAIRN   75 (140)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHHCCC--EEE-EECSHHHHHTTTT-----TCCCCSEEEECSCSSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHhccCc--cEE-EECCHHHHHHHHh-----cCCCCcEEEEeCCCCCCCcHHHHHHHHHh
Confidence            45899999999999999998888 664  233 4556656555442     4 6899999997544   33456666655


Q ss_pred             --ccCcCeEEEEec
Q 029764          120 --LLKVGGIAVYDN  131 (188)
Q Consensus       120 --~L~~gG~lv~~~  131 (188)
                        ....--++++..
T Consensus        76 ~~~~~~~~ii~ls~   89 (140)
T 3lua_A           76 NSRTANTPVIIATK   89 (140)
T ss_dssp             SGGGTTCCEEEEES
T ss_pred             CcccCCCCEEEEeC
Confidence              333334555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	188
d1susa1	227	c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransfera	5e-50
d2avda1	219	c.66.1.1 (A:44-262) COMT domain-containing protein	2e-39
d2cl5a1	214	c.66.1.1 (A:3-216) Catechol O-methyltransferase, C	8e-29
d2bm8a1	232	c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI	1e-10
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	2e-05
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	5e-05
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	7e-05
d1zx0a1	229	c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe	9e-05
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	3e-04

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 227

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  159 bits (402), Expect = 5e-50
 Identities = 110/187 (58%), Positives = 147/187 (78%)

Query: 1   MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI 60
           +M T+ D GQ ++MLL+L+NAK T+EIGV+TGYSLL TAL IPEDG+I A+D+N+E YE+
Sbjct: 40  IMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYEL 99

Query: 61  GLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL 120
           GLP+IKKAGVDHKI+F E  AL VLD+++K  +N GS+D+ FVDADKDNY NYH+RL+ L
Sbjct: 100 GLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDL 159

Query: 121 LKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG 180
           +KVGG+  YDNTLW G+V  P +     +    R  +L+LN++LA DPR+++  + +GDG
Sbjct: 160 VKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDG 219

Query: 181 ITICRRI 187
           ITICRRI
Sbjct: 220 ITICRRI 226

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 219

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  132 bits (332), Expect = 2e-39
 Identities = 70/186 (37%), Positives = 106/186 (56%), Gaps = 7/186 (3%)

Query: 2   MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 61
                +  QL+A L RL+ AKK +++G FTGYS L  AL +P DG++   +V+ +  E+G
Sbjct: 41  SMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELG 100

Query: 62  LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 121
            P+ ++A  +HKI+     AL  LD+LL  +   G+FD A VDADK+N   Y+ER ++LL
Sbjct: 101 RPLWRQAEAEHKIDLRLKPALETLDELLA-AGEAGTFDVAVVDADKENCSAYYERCLQLL 159

Query: 122 KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGI 181
           + GGI      LW G V  P +           + + +LN  +  D RV +S + LGDG+
Sbjct: 160 RPGGILAVLRVLWRGKVLQPPKGDVAA------ECVRNLNERIRRDVRVYISLLPLGDGL 213

Query: 182 TICRRI 187
           T+  +I
Sbjct: 214 TLAFKI 219

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 214

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  104 bits (260), Expect = 8e-29
 Identities = 36/185 (19%), Positives = 72/185 (38%), Gaps = 16/185 (8%)

Query: 1   MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI 60
            M      GQ+M  ++R  +    +E+G + GYS +  A  +    ++  +++N +   I
Sbjct: 37  AMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAI 96

Query: 61  GLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERL--M 118
              ++  AG+  K+  +   +  ++ Q LK   +  + D  F+D  KD Y      L   
Sbjct: 97  TQQMLNFAGLQDKVTILNGASQDLIPQ-LKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC 155

Query: 119 KLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALG 178
            LL+ G + + DN +  GT                   +   +          L ++ + 
Sbjct: 156 GLLRKGTVLLADNVIVPGTPDF-------------LAYVRGSSSFECTHYSSYLEYMKVV 202

Query: 179 DGITI 183
           DG+  
Sbjct: 203 DGLEK 207

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} Length = 232

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

 Score = 56.3 bits (135), Expect = 1e-10
 Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 14/136 (10%)

Query: 6   PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTA---LTIPEDGQITAIDVNRETYEIGL 62
           PD   +   +L  +  +  +E+GV+ G SL         +  D Q+  ID +    +I  
Sbjct: 66  PDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQI-- 123

Query: 63  PIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHER-LMKLL 121
                      +  I        D        E +    F+D    N  N  +  +  LL
Sbjct: 124 -------PASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLL 176

Query: 122 KVGG-IAVYDNTLWGG 136
           + G    + D   +  
Sbjct: 177 EEGDYFIIEDMIPYWY 192

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 2e-05
 Identities = 22/130 (16%), Positives = 46/130 (35%), Gaps = 8/130 (6%)

Query: 6   PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII 65
           P    ++  ++ +      +E G  +G   L  +  +   G++ + +V ++ +++     
Sbjct: 84  PKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNY 143

Query: 66  KKAGVDHKINFIESEALSVLDQL-----LKYSENEGSFDYAFVDADKDNYCNYHERLMKL 120
           K      K++ +E    +V                 +FD   +D    N           
Sbjct: 144 KHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDM--LNPHVTLPVFYPH 201

Query: 121 LKVGG-IAVY 129
           LK GG  AVY
Sbjct: 202 LKHGGVCAVY 211

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 39.8 bits (92), Expect = 5e-05
 Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 10/125 (8%)

Query: 4   TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLP 63
           TA +   L+  L         +++G  TG    +T        ++ AID N E       
Sbjct: 17  TAMEVRCLIMCLAEPGKNDVAVDVGCGTGG---VTLELAGRVRRVYAIDRNPEAISTTEM 73

Query: 64  IIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKV 123
            +++ G+   +  +E +A   L ++          D A V             +   LK 
Sbjct: 74  NLQRHGLGDNVTLMEGDAPEALCKI-------PDIDIAVVGGSGGELQEILRIIKDKLKP 126

Query: 124 GGIAV 128
           GG  +
Sbjct: 127 GGRII 131

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 40.0 bits (93), Expect = 7e-05
 Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 9/125 (7%)

Query: 6   PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII 65
            DA Q++     +    + +E G  +G   L     +   GQ+ + +   +  E     +
Sbjct: 83  KDAAQIV-HEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNV 141

Query: 66  KKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGG 125
                    N+       V+  L      +GS D A +D          + + +LL  GG
Sbjct: 142 SGCYGQPPDNWRL-----VVSDLADSELPDGSVDRAVLDM--LAPWEVLDAVSRLLVAGG 194

Query: 126 -IAVY 129
            + VY
Sbjct: 195 VLMVY 199

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 9e-05
 Identities = 18/154 (11%), Positives = 46/154 (29%), Gaps = 6/154 (3%)

Query: 10  QLMAMLLRLVNA--KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK 67
             M  L    ++   + +E+G     +   + +      +   I+ N   ++       +
Sbjct: 41  PYMHALAAAASSKGGRVLEVGFGMAIAA--SKVQEAPIDEHWIIECNDGVFQRLRDWAPR 98

Query: 68  AGVDHKINFIESEALSVLDQLLKYSEN-EGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 126
                       E ++       +      ++  +        +        +LLK GG+
Sbjct: 99  QTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGV 158

Query: 127 AVYDNTLWGGTVAVPEEQ-VPDHFRGSSRQAILD 159
             Y N    G +   +   +   F  +   A+L+
Sbjct: 159 LTYCNLTSWGELMKSKYSDITIMFEETQVPALLE 192

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.7 bits (87), Expect = 3e-04
 Identities = 19/123 (15%), Positives = 44/123 (35%), Gaps = 11/123 (8%)

Query: 6   PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII 65
            DA   + M   L      +E+GV +G         +   G +T ++ + +  +  +  +
Sbjct: 72  IDASY-IIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNL 130

Query: 66  KKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGG 125
            +      +    S+    +              Y  V AD  +  N+ +++  ++K G 
Sbjct: 131 SEFYDIGNVRTSRSDIADFISD----------QMYDAVIADIPDPWNHVQKIASMMKPGS 180

Query: 126 IAV 128
           +A 
Sbjct: 181 VAT 183

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	188
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	100.0
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	100.0
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.97
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.86
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.81
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.76
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.76
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.76
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.74
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.74
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.74
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.73
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.73
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.73
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.71
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.71
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.69
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.69
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.69
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.68
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.68
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.67
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.67
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.66
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.66
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.66
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.66
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.66
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.65
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.65
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.65
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.65
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.65
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.64
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.64
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.63
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.62
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.61
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.61
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.61
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.61
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.6
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.6
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.6
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.59
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.59
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.59
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.57
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.56
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.55
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.53
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.53
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.53
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.52
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	99.52
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.51
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	99.5
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.48
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.47
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.46
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.43
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.43
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	99.43
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.42
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.4
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.4
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.39
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.38
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	99.37
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	99.36
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	99.36
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	99.33
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	99.33
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.32
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.32
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.29
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.29
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	99.22
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.21
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.15
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	99.11
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.05
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	99.0
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	99.0
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.97
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.94
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.93
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.86
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.81
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.79
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.78
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.78
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.71
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.67
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.55
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.54
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.49
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.49
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	98.36
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.27
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	98.15
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.97
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.89
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.84
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.79
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.79
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.77
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	97.73
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.71
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.6
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.59
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.54
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	97.52
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.41
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	97.35
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	97.29
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.25
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	97.2
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.2
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	97.18
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	97.13
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	97.05
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.86
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	96.79
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	96.73
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.66
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	96.63
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	96.47
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	96.41
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	96.35
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	96.24
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	96.23
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.18
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	95.94
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.93
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	95.92
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	95.79
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	95.75
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	95.64
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	95.6
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	95.55
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	95.52
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	95.46
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	95.12
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	94.82
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	94.79
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	94.72
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	94.45
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	94.02
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	93.95
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	93.82
d2oo3a1	271	Uncharacterized protein LPG1296 {Legionella pneumo	93.62
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	93.48
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	93.23
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	93.13
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	92.5
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	92.45
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	92.36
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	92.36
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	92.33
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	92.26
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	92.25
d2b4aa1	118	Hypothetical protein BH3024 {Bacillus halodurans [	92.06
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	91.91
d2r25b1	128	Response regulator Sin1 {Baker's yeast (Saccharomy	91.85
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	91.54
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	91.37
d1rjda_	328	Leucine carboxy methyltransferase Ppm1 {Baker's ye	90.96
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	90.96
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	90.87
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	90.82
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	90.39
d1peya_	119	Sporulation response regulator Spo0F {Bacillus sub	90.08
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	90.08
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	89.97
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	89.68
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	89.67
d1kgsa2	122	PhoB receiver domain {Thermotoga maritima [TaxId:	89.23
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	88.86
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	88.75
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	88.64
d1dcfa_	134	Receiver domain of the ethylene receptor {Thale cr	88.55
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	88.41
d1mvoa_	121	PhoP receiver domain {Bacillus subtilis [TaxId: 14	88.37
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	88.32
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	87.85
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	87.84
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	87.66
d1ny5a1	137	Transcriptional activator sigm54 (NtrC1), N-termin	87.44
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	87.29
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	87.1
d2pl1a1	119	PhoP receiver domain {Escherichia coli [TaxId: 562	86.9
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	86.84
d1mb3a_	123	Cell division response regulator DivK {Caulobacter	86.73
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	86.32
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	86.24
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	86.05
d1dbwa_	123	Transcriptional regulatory protein FixJ, receiver	85.91
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	85.87
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	85.75
d2ayxa1	133	Sensor kinase protein RcsC, C-terminal domain {Esc	85.42
d1dz3a_	123	Sporulation response regulator Spo0A {Bacillus ste	85.23
d1yioa2	128	Response regulatory protein StyR, N-terminal domai	85.17
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	85.0
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	84.95
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	84.92
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	84.7
d1xhfa1	121	Aerobic respiration control protein ArcA, N-termin	84.69
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	84.51
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	84.5
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	84.48
d1ys7a2	121	Transcriptional regulatory protein PrrA, N-termina	84.47
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	84.41
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	84.15
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	84.02
d1krwa_	123	NTRC receiver domain {Salmonella typhimurium [TaxI	83.9
d1p2fa2	120	Response regulator DrrB {Thermotoga maritima [TaxI	83.85
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	83.82
d1jbea_	128	CheY protein {Escherichia coli [TaxId: 562]}	83.56
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	83.22
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	82.88
d1p6qa_	129	CheY protein {Sinorhizobium meliloti, CheY2 [TaxId	82.87
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	82.84
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	82.8
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	82.67
d1qkka_	140	Transcriptional regulatory protein DctD, receiver	82.62
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	82.57
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	82.51
d1a2oa1	140	Methylesterase CheB, N-terminal domain {Salmonella	82.49
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	82.33
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	82.16
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	82.13
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	82.0
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	81.92
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	81.73
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	81.65
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	81.59
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	81.55
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	81.41
d1i3ca_	144	Response regulator for cyanobacterial phytochrome	80.9
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	80.82
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	80.37
d2a9pa1	117	DNA-binding response regulator MicA, N-terminal do	80.21
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	80.17
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	80.08

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=1.7e-39  Score=241.62  Aligned_cols=186  Identities=60%  Similarity=1.025  Sum_probs=168.3

Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch
Q 029764            2 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   81 (188)
Q Consensus         2 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   81 (188)
                      |.++|+++++|..++...++++||||||++|++++++|++++++++++++|.+++..+.|++++++.|+.++++++.+++
T Consensus        41 m~~~~~~g~~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a  120 (227)
T d1susa1          41 MTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPA  120 (227)
T ss_dssp             GSCCHHHHHHHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHH
Confidence            77899999999999999999999999999999999999999888999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCC-cccchHHHHHHH
Q 029764           82 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDH-FRGSSRQAILDL  160 (188)
Q Consensus        82 ~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~  160 (188)
                      .+.++++.+.....++||+||+|+++..+..+++.+.++|+|||++++||++|.|.+..+....... .+. ....+++|
T Consensus       121 ~~~L~~l~~~~~~~~~fD~iFiDa~k~~y~~~~e~~~~ll~~gGiii~DNvl~~G~v~~~~~~~~~~~~~~-~~~~i~~~  199 (227)
T d1susa1         121 LPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRY-YRDFVLEL  199 (227)
T ss_dssp             HHHHHHHHHCGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEETTTGGGGGGCCTTCCCCHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHhccccCCceeEEEeccchhhhHHHHHHHHhhcCCCcEEEEccCCCCCcccCCcccchHHHHHH-HHHHHHHH
Confidence            9999987653222468999999999999999999999999999999999999999998876543222 222 45679999


Q ss_pred             HHHhhcCCCeEEEEeecCCceEEEEEcC
Q 029764          161 NRSLADDPRVQLSHVALGDGITICRRIF  188 (188)
Q Consensus       161 ~~~~~~~~~~~~~~lp~~~G~~~~~~~~  188 (188)
                      ++++.++|+|+++++|+++|+.|++|.+
T Consensus       200 n~~i~~d~r~~~~llPigDGl~i~~K~~  227 (227)
T d1susa1         200 NKALAVDPRIEICMLPVGDGITICRRIK  227 (227)
T ss_dssp             HHHHHHCTTBCCEEECSTTCEEEECBCC
T ss_pred             HHHHhcCCCEEEEEeecCCeeEEEEECC
Confidence            9999999999999999999999999875

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-38  Score=234.72  Aligned_cols=179  Identities=39%  Similarity=0.644  Sum_probs=164.7

Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch
Q 029764            2 MGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   81 (188)
Q Consensus         2 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   81 (188)
                      |..+|+++++|..+++..++++||||||++|++++++|.+++++++++++|.+++..+.|+++++..|+.++++++.+|+
T Consensus        41 ~~i~~~~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda  120 (219)
T d2avda1          41 SMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPA  120 (219)
T ss_dssp             GSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeeh
Confidence            66889999999999999999999999999999999999999888999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHH
Q 029764           82 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLN  161 (188)
Q Consensus        82 ~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  161 (188)
                      .+.++++... ...++||+||+|+++..+..+++.+.++|+|||+++++|++|.|.+..+.....      ...++++|+
T Consensus       121 ~e~l~~~~~~-~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~GGvii~Dn~l~~G~v~~~~~~d~------~~~~ir~~~  193 (219)
T d2avda1         121 LETLDELLAA-GEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDV------AAECVRNLN  193 (219)
T ss_dssp             HHHHHHHHHT-TCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCH------HHHHHHHHH
T ss_pred             hhcchhhhhh-cccCCccEEEEeCCHHHHHHHHHHHHHHhcCCcEEEEeCCcccCcccCcccCCH------HHHHHHHHH
Confidence            9988876543 224689999999999999999999999999999999999999999888753321      677899999


Q ss_pred             HHhhcCCCeEEEEeecCCceEEEEEc
Q 029764          162 RSLADDPRVQLSHVALGDGITICRRI  187 (188)
Q Consensus       162 ~~~~~~~~~~~~~lp~~~G~~~~~~~  187 (188)
                      +++.++|+|+++++|+++|+++++|.
T Consensus       194 ~~i~~d~r~~~~llPigdGl~ia~Kl  219 (219)
T d2avda1         194 ERIRRDVRVYISLLPLGDGLTLAFKI  219 (219)
T ss_dssp             HHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             HHHHhCCCEEEEEeecCCeeEEEEeC
Confidence            99999999999999999999999984

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=1.4e-30  Score=192.21  Aligned_cols=166  Identities=21%  Similarity=0.340  Sum_probs=144.3

Q ss_pred             CCCCcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcc
Q 029764            1 MMGTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   80 (188)
Q Consensus         1 ~~~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d   80 (188)
                      +|..+|+++++|..+++..+|++|||||||+|++++++|++++++++++++|.+++.++.|+++++..|+.++++++.+|
T Consensus        37 ~m~i~~~~G~lL~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd  116 (214)
T d2cl5a1          37 AMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGA  116 (214)
T ss_dssp             CCSCHHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESC
T ss_pred             ccccCHHHHHHHHHHHHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeecc
Confidence            47899999999999999999999999999999999999999987899999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhcccCCCceeEEEEeCCccchHHH--HHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHH
Q 029764           81 ALSVLDQLLKYSENEGSFDYAFVDADKDNYCNY--HERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAIL  158 (188)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~--~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  158 (188)
                      +.+.++.+.+. ....+||+||+|+++..+...  +...+++|+|||+||++|++|+|                    ..
T Consensus       117 ~~e~l~~l~~~-~~~~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv~Ddvl~~g--------------------~~  175 (214)
T d2cl5a1         117 SQDLIPQLKKK-YDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPG--------------------TP  175 (214)
T ss_dssp             HHHHGGGHHHH-SCCCCEEEEEECSCGGGHHHHHHHHHHTTCEEEEEEEEESCCCCCC--------------------CH
T ss_pred             ccccccchhhc-ccccccceeeecccccccccHHHHHHHhCccCCCcEEEEeCcCCCC--------------------Ch
Confidence            99988776543 124689999999988877654  55567899999999999999966                    34


Q ss_pred             HHHHHhhcCCCeEEEE-------eecCCceEEEEEc
Q 029764          159 DLNRSLADDPRVQLSH-------VALGDGITICRRI  187 (188)
Q Consensus       159 ~~~~~~~~~~~~~~~~-------lp~~~G~~~~~~~  187 (188)
                      .+.++++..+++.+..       +|+++|+.++..+
T Consensus       176 ~~~~~vr~~~~~~~~~~~~~~~~~~~~dgl~~s~~~  211 (214)
T d2cl5a1         176 DFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQ  211 (214)
T ss_dssp             HHHHHHHHCTTEEEEEEEEECTTSSSEEEEEEEEEC
T ss_pred             HHHHHHhccCceeehhhhhcceecccCCceEEEEec
Confidence            5667788888887664       6889999998753

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.86  E-value=2e-20  Score=134.68  Aligned_cols=120  Identities=22%  Similarity=0.212  Sum_probs=104.7

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029764            4 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   83 (188)
Q Consensus         4 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   83 (188)
                      |..+...++-..+...++.+|||+|||+|..++.+|+.   ..+|+++|+++++++.|++|++++++.++++++++|+.+
T Consensus        17 t~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~---~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~   93 (186)
T d1l3ia_          17 TAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR---VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE   93 (186)
T ss_dssp             CCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH
T ss_pred             ChHHHHHHHHHhcCCCCCCEEEEEECCeEccccccccc---ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhh
Confidence            55666666666678888899999999999999999875   459999999999999999999999998899999999987


Q ss_pred             HHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           84 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        84 ~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      ....       ...||+||++....+..++++.+.+.|||||.+++....
T Consensus        94 ~~~~-------~~~~D~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~  136 (186)
T d1l3ia_          94 ALCK-------IPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAIL  136 (186)
T ss_dssp             HHTT-------SCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred             cccc-------cCCcCEEEEeCccccchHHHHHHHHHhCcCCEEEEEeec
Confidence            7543       479999999988788889999999999999999987544

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=4.1e-20  Score=138.30  Aligned_cols=123  Identities=20%  Similarity=0.236  Sum_probs=103.6

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029764            4 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   83 (188)
Q Consensus         4 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   83 (188)
                      ..++....|...+...++.+|||||||+|..+..+++..  +++|++||+++.+++.|+++.+..++.++++++++|+.+
T Consensus        17 ~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~--~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~   94 (245)
T d1nkva_          17 FTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG   94 (245)
T ss_dssp             CCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT
T ss_pred             CCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhc--CCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhh
Confidence            345566666677778889999999999999999999874  479999999999999999999999999999999999876


Q ss_pred             HHHHHhhcccCCCceeEEEEeC---CccchHHHHHHHHhccCcCeEEEEeccccCc
Q 029764           84 VLDQLLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLWGG  136 (188)
Q Consensus        84 ~~~~~~~~~~~~~~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  136 (188)
                      ..+        .++||+|++-.   +..+...+++++.+.|||||.+++.+..+..
T Consensus        95 ~~~--------~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~  142 (245)
T d1nkva_          95 YVA--------NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQ  142 (245)
T ss_dssp             CCC--------SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETT
T ss_pred             ccc--------cCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEeccccC
Confidence            421        47899999764   3446789999999999999999998876544

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.76  E-value=1.5e-18  Score=128.73  Aligned_cols=117  Identities=17%  Similarity=0.217  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029764            6 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   85 (188)
Q Consensus         6 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   85 (188)
                      +....+|...+...++.+|||||||+|..+..+++.   ..+|+++|+++.+++.|++++...++. ++.++++|+.+. 
T Consensus         2 ~~~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~---~~~v~gvD~S~~~l~~A~~~~~~~~~~-~~~~~~~d~~~~-   76 (234)
T d1xxla_           2 HHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY---VQECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESL-   76 (234)
T ss_dssp             HHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBC-
T ss_pred             chHHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHh---CCeEEEEeCChhhhhhhhhhhcccccc-cccccccccccc-
Confidence            455677888889999999999999999999999986   459999999999999999999888864 599999998653 


Q ss_pred             HHHhhcccCCCceeEEEEeCC---ccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           86 DQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        86 ~~~~~~~~~~~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      + +     ..++||+|++...   ..+...+++++.++|||||.+++.+..
T Consensus        77 ~-~-----~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~  121 (234)
T d1xxla_          77 P-F-----PDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHY  121 (234)
T ss_dssp             C-S-----CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             c-c-----cccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcC
Confidence            1 2     2579999998753   346789999999999999998886543

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.76  E-value=1e-18  Score=129.13  Aligned_cols=116  Identities=15%  Similarity=0.249  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764            7 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   86 (188)
Q Consensus         7 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   86 (188)
                      +.++++.. +...++.+|||||||+|..+..+++.   +.+++++|+++++++.|++++...+.. ++++.++|+.+. +
T Consensus         3 ~~~~ll~~-~~l~~~~rVLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~i~~A~~~~~~~~~~-~i~~~~~d~~~l-~   76 (231)
T d1vl5a_           3 DLAKLMQI-AALKGNEEVLDVATGGGHVANAFAPF---VKKVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQM-P   76 (231)
T ss_dssp             CHHHHHHH-HTCCSCCEEEEETCTTCHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CC-C
T ss_pred             hHHHHHHh-cCCCCcCEEEEecccCcHHHHHHHHh---CCEEEEEECCHHHHhhhhhcccccccc-cccccccccccc-c
Confidence            45666664 67788899999999999999999986   459999999999999999999888864 699999998654 1


Q ss_pred             HHhhcccCCCceeEEEEeC---CccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           87 QLLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        87 ~~~~~~~~~~~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                       +     ..++||+|++..   +..+...+++++.++|||||++++.+...
T Consensus        77 -~-----~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~  121 (231)
T d1vl5a_          77 -F-----TDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSA  121 (231)
T ss_dssp             -S-----CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             -c-----cccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence             2     247999999874   34567889999999999999999876544

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.76  E-value=4.3e-17  Score=122.13  Aligned_cols=115  Identities=19%  Similarity=0.244  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHH-cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029764            6 PDAGQLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   84 (188)
Q Consensus         6 ~~~~~~l~~l~~~-~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   84 (188)
                      +.+..+|..+... .++++|||+|||+|..++.+++.   +.+|+++|+++.+++.|++|++.+++.  .+++++|..+.
T Consensus       105 ~TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~---g~~V~gvDis~~av~~A~~na~~n~~~--~~~~~~d~~~~  179 (254)
T d2nxca1         105 ETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKL---GGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAA  179 (254)
T ss_dssp             HHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHH
T ss_pred             chhhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhc---CCEEEEEECChHHHHHHHHHHHHcCCc--eeEEecccccc
Confidence            4556666666653 46679999999999999988874   579999999999999999999998874  57888987654


Q ss_pred             HHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           85 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        85 ~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      .+        .++||+|++.........+++.+.++|||||.+++++.+
T Consensus       180 ~~--------~~~fD~V~ani~~~~l~~l~~~~~~~LkpGG~lilSgil  220 (254)
T d2nxca1         180 LP--------FGPFDLLVANLYAELHAALAPRYREALVPGGRALLTGIL  220 (254)
T ss_dssp             GG--------GCCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cc--------ccccchhhhccccccHHHHHHHHHHhcCCCcEEEEEecc
Confidence            32        378999999876667788889999999999999998655

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.74  E-value=8e-19  Score=131.16  Aligned_cols=107  Identities=14%  Similarity=0.225  Sum_probs=91.8

Q ss_pred             HHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029764           14 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   93 (188)
Q Consensus        14 ~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   93 (188)
                      ..+...++.+|||+|||+|..+.++|+...+.++|+++|.++++++.|+++++..+...++++.++|..+.++       
T Consensus        79 ~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~-------  151 (250)
T d1yb2a1          79 MRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS-------  151 (250)
T ss_dssp             --CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC-------
T ss_pred             HHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccc-------
Confidence            3456788999999999999999999998766899999999999999999999988777889999999876422       


Q ss_pred             CCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           94 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        94 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                       ...||.||+|.  .+.+.+++.+.+.|||||++++.
T Consensus       152 -~~~fD~V~ld~--p~p~~~l~~~~~~LKpGG~lv~~  185 (250)
T d1yb2a1         152 -DQMYDAVIADI--PDPWNHVQKIASMMKPGSVATFY  185 (250)
T ss_dssp             -SCCEEEEEECC--SCGGGSHHHHHHTEEEEEEEEEE
T ss_pred             -cceeeeeeecC--CchHHHHHHHHHhcCCCceEEEE
Confidence             47899999985  34467899999999999999984

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.74  E-value=4.2e-18  Score=124.80  Aligned_cols=112  Identities=21%  Similarity=0.355  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764            7 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   86 (188)
Q Consensus         7 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   86 (188)
                      ..+++++ .+...++.+|||||||+|+.+..+|+...+.++|+++|+++++++.|+++++..++. ++.++++|+.+..+
T Consensus        63 ~~a~~l~-~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~-n~~~~~~d~~~~~~  140 (213)
T d1dl5a1          63 LMALFME-WVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-NVIFVCGDGYYGVP  140 (213)
T ss_dssp             HHHHHHH-HTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCG
T ss_pred             hhHHHHH-hhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhccc-ccccccCchHHccc
Confidence            3455554 457888899999999999999999998766889999999999999999999998875 58888999876433


Q ss_pred             HHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           87 QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        87 ~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      .       .++||.|++.+...+..   +.+.+.|||||.+++.
T Consensus       141 ~-------~~~fD~I~~~~~~~~~p---~~l~~~LkpGG~lv~p  174 (213)
T d1dl5a1         141 E-------FSPYDVIFVTVGVDEVP---ETWFTQLKEGGRVIVP  174 (213)
T ss_dssp             G-------GCCEEEEEECSBBSCCC---HHHHHHEEEEEEEEEE
T ss_pred             c-------ccchhhhhhhccHHHhH---HHHHHhcCCCcEEEEE
Confidence            2       37899999987655432   3567889999999884

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.9e-18  Score=127.46  Aligned_cols=119  Identities=17%  Similarity=0.247  Sum_probs=95.4

Q ss_pred             CCCcHHHHHHHHHHH-HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCC----CcEEE
Q 029764            2 MGTAPDAGQLMAMLL-RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD----HKINF   76 (188)
Q Consensus         2 ~~~~~~~~~~l~~l~-~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~----~~~~~   76 (188)
                      |+.+...+++++.|. ...++.+|||||||+|+.+..+|+...+.++|+++|.++++++.|++++++.++.    +++.+
T Consensus        57 is~P~~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~  136 (224)
T d1i1na_          57 ISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQL  136 (224)
T ss_dssp             ECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEE
T ss_pred             hhhhHHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEE
Confidence            344556777887765 4567789999999999999999987766889999999999999999999887653    57899


Q ss_pred             EEcchHHHHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           77 IESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        77 ~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      +.+|+....+.       ...||.|++.+...+.   .+.+.+.|||||.+|+.
T Consensus       137 ~~gD~~~~~~~-------~~~fD~I~~~~~~~~i---p~~l~~~LkpGG~LV~p  180 (224)
T d1i1na_         137 VVGDGRMGYAE-------EAPYDAIHVGAAAPVV---PQALIDQLKPGGRLILP  180 (224)
T ss_dssp             EESCGGGCCGG-------GCCEEEEEECSBBSSC---CHHHHHTEEEEEEEEEE
T ss_pred             EEeecccccch-------hhhhhhhhhhcchhhc---CHHHHhhcCCCcEEEEE
Confidence            99998754332       4789999998765543   24567899999999983

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.73  E-value=3.7e-18  Score=128.32  Aligned_cols=117  Identities=16%  Similarity=0.189  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc--CCCCcEEEEEcchHH
Q 029764            6 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GVDHKINFIESEALS   83 (188)
Q Consensus         6 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~~~~~~~~~~d~~~   83 (188)
                      |.-..++-.++...++.+|||+|||+|+.+..||+...++++|+++|.++++++.|+++++..  +..+++.+.++|..+
T Consensus        82 pkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~  161 (264)
T d1i9ga_          82 PKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD  161 (264)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG
T ss_pred             hHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccc
Confidence            444556666778999999999999999999999999876899999999999999999999875  345789999999865


Q ss_pred             HHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           84 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        84 ~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      .  .+     ..+.||.||+|.  .++++.++.+.+.|||||.+++..
T Consensus       162 ~--~~-----~~~~fDaV~ldl--p~P~~~l~~~~~~LkpGG~lv~~~  200 (264)
T d1i9ga_         162 S--EL-----PDGSVDRAVLDM--LAPWEVLDAVSRLLVAGGVLMVYV  200 (264)
T ss_dssp             C--CC-----CTTCEEEEEEES--SCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             c--cc-----cCCCcceEEEec--CCHHHHHHHHHhccCCCCEEEEEe
Confidence            3  11     257899999985  445678999999999999998854

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.73  E-value=3.7e-18  Score=128.84  Aligned_cols=116  Identities=21%  Similarity=0.296  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029764            6 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   85 (188)
Q Consensus         6 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   85 (188)
                      |.-..++..++...++.+|||+|||+|+.+..+|+...++++|+++|.++++++.|+++++..++.+++.+..+|.....
T Consensus        89 pkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~  168 (266)
T d1o54a_          89 PKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGF  168 (266)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCC
T ss_pred             hHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccc
Confidence            44556677788899999999999999999999999987689999999999999999999999999888999999864421


Q ss_pred             HHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           86 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        86 ~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                              +...+|.||+|.  .+++.+++.+.+.|||||.+++..
T Consensus       169 --------~~~~~D~V~~d~--p~p~~~l~~~~~~LKpGG~lv~~~  204 (266)
T d1o54a_         169 --------DEKDVDALFLDV--PDPWNYIDKCWEALKGGGRFATVC  204 (266)
T ss_dssp             --------SCCSEEEEEECC--SCGGGTHHHHHHHEEEEEEEEEEE
T ss_pred             --------cccceeeeEecC--CCHHHHHHHHHhhcCCCCEEEEEe
Confidence                    247899999985  455678999999999999999753

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.73  E-value=4.3e-18  Score=129.69  Aligned_cols=109  Identities=13%  Similarity=0.205  Sum_probs=93.1

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..++.+|||||||+|..+..+++..  +.+|+++|+++.+++.|+++....++.++++++++|+.+. + +     ..++
T Consensus        65 l~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l-~-~-----~~~s  135 (282)
T d2o57a1          65 LQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-P-C-----EDNS  135 (282)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC-S-S-----CTTC
T ss_pred             CCCCCEEEEeCCCCcHHHhhhhccC--CcEEEEEeccchhhhhhhcccccccccccccccccccccc-c-c-----cccc
Confidence            4577899999999999999999864  5699999999999999999999999999999999998764 1 1     2578


Q ss_pred             eeEEEEeC---CccchHHHHHHHHhccCcCeEEEEeccccC
Q 029764           98 FDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLWG  135 (188)
Q Consensus        98 ~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  135 (188)
                      ||+|++..   +..+...+++++.++|||||.+++.+....
T Consensus       136 fD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~~  176 (282)
T d2o57a1         136 YDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKE  176 (282)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred             cchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEeecC
Confidence            99999764   345678899999999999999999876653

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.7e-17  Score=128.28  Aligned_cols=115  Identities=15%  Similarity=0.220  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc----------CCCCcEEEEE
Q 029764            9 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA----------GVDHKINFIE   78 (188)
Q Consensus         9 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~----------~~~~~~~~~~   78 (188)
                      ..++-.++...++.+|||+|||+|+.+..||+...++++|+++|+++++++.|++|++..          +..+++++.+
T Consensus        87 ~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~  166 (324)
T d2b25a1          87 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH  166 (324)
T ss_dssp             HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred             HHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEe
Confidence            445555678999999999999999999999998876899999999999999999999864          3356899999


Q ss_pred             cchHHHHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           79 SEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        79 ~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      +|..+....+     ....||.||+|..  +++..++.+.+.|||||.+++-
T Consensus       167 ~di~~~~~~~-----~~~~fD~V~LD~p--~P~~~l~~~~~~LKpGG~lv~~  211 (324)
T d2b25a1         167 KDISGATEDI-----KSLTFDAVALDML--NPHVTLPVFYPHLKHGGVCAVY  211 (324)
T ss_dssp             SCTTCCC------------EEEEEECSS--STTTTHHHHGGGEEEEEEEEEE
T ss_pred             cchhhccccc-----CCCCcceEeecCc--CHHHHHHHHHHhccCCCEEEEE
Confidence            9986543332     1468999999853  3456789999999999999873

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.71  E-value=1.2e-16  Score=117.61  Aligned_cols=108  Identities=12%  Similarity=0.146  Sum_probs=89.6

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      ..++.+|||+|||+|..+..+++..+ ++.+|+++|+++++++.|+++++..+...++.+..+|..+.         +..
T Consensus        37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~---------~~~  107 (225)
T d1im8a_          37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV---------EIK  107 (225)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTC---------CCC
T ss_pred             cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcc---------ccc
Confidence            35667999999999999999998753 47899999999999999999998888777888888887543         246


Q ss_pred             ceeEEEEeC-----CccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           97 SFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        97 ~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      .+|+|++..     +.++...+++++.+.|+|||.+++.+...
T Consensus       108 ~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~  150 (225)
T d1im8a_         108 NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR  150 (225)
T ss_dssp             SEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             cceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecccccc
Confidence            889988763     23466789999999999999999977554

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.69  E-value=5.8e-17  Score=116.98  Aligned_cols=109  Identities=16%  Similarity=0.183  Sum_probs=88.4

Q ss_pred             HHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCC-cEEEEEcchHHHHHHH
Q 029764           10 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLDQL   88 (188)
Q Consensus        10 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~   88 (188)
                      ++|...+...++++|||+|||+|..++.++...   .+++++|+++.+++.++++++.+++.+ ++++..+|..+.++  
T Consensus        42 ~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~---~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~--  116 (194)
T d1dusa_          42 KILVENVVVDKDDDILDLGCGYGVIGIALADEV---KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK--  116 (194)
T ss_dssp             HHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT--
T ss_pred             HHHHHhCCcCCCCeEEEEeecCChhHHHHHhhc---cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhc--
Confidence            444444456678899999999999999999864   489999999999999999999988864 68999999865322  


Q ss_pred             hhcccCCCceeEEEEeCCcc----chHHHHHHHHhccCcCeEEEE
Q 029764           89 LKYSENEGSFDYAFVDADKD----NYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        89 ~~~~~~~~~~D~i~id~~~~----~~~~~~~~~~~~L~~gG~lv~  129 (188)
                            .++||+|+++....    ....+++.+.++|+|||.+++
T Consensus       117 ------~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i  155 (194)
T d1dusa_         117 ------DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWV  155 (194)
T ss_dssp             ------TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ------cCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEE
Confidence                  47899999985422    235678889999999998876

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.69  E-value=1.1e-16  Score=119.52  Aligned_cols=101  Identities=18%  Similarity=0.336  Sum_probs=83.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++++|||+|||+|..+..+++.   +.++++||+++++++.|++++...+.  +++++++|+.++  .+      .++|
T Consensus        40 ~~~~~iLDiGcGtG~~~~~l~~~---~~~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l--~~------~~~f  106 (251)
T d1wzna1          40 REVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEI--AF------KNEF  106 (251)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGC--CC------CSCE
T ss_pred             CCCCEEEEeCCCCCccchhhccc---ceEEEEEeeccccccccccccccccc--cchheehhhhhc--cc------cccc
Confidence            34568999999999999999985   56999999999999999999888764  589999998765  11      4689


Q ss_pred             eEEEEeCC------ccchHHHHHHHHhccCcCeEEEEecc
Q 029764           99 DYAFVDAD------KDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        99 D~i~id~~------~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      |+|++...      ..+...+++++.++|||||+++++-.
T Consensus       107 D~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~  146 (251)
T d1wzna1         107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP  146 (251)
T ss_dssp             EEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             chHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEec
Confidence            99998531      13456789999999999999998643

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.69  E-value=3e-17  Score=125.01  Aligned_cols=108  Identities=19%  Similarity=0.314  Sum_probs=91.0

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      ...++.+|||+|||+|..+..++...+.+.+|+++|+++.+++.|++++...+.  ++++.++|+.+.  .+      .+
T Consensus        24 ~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~~~d~~~~--~~------~~   93 (281)
T d2gh1a1          24 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEI--EL------ND   93 (281)
T ss_dssp             CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--EEEEEESCTTTC--CC------SS
T ss_pred             ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--cccccccccccc--cc------cC
Confidence            356788999999999999999999887678999999999999999999887764  689999998653  11      36


Q ss_pred             ceeEEEEeCC---ccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           97 SFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        97 ~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      +||+|++...   ..+...+++++.+.|||||.+++.+..|
T Consensus        94 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~~  134 (281)
T d2gh1a1          94 KYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHW  134 (281)
T ss_dssp             CEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCH
T ss_pred             CceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECCc
Confidence            8999998853   3467789999999999999999877654

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=6.8e-17  Score=119.52  Aligned_cols=118  Identities=19%  Similarity=0.180  Sum_probs=91.3

Q ss_pred             HHHHHHHH--cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029764           11 LMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   88 (188)
Q Consensus        11 ~l~~l~~~--~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   88 (188)
                      ++..++..  .++.+|||||||+|.++..+++..  ..++++||+++.+++.|++++...+  .++.++.+++.+....+
T Consensus        42 ~~~~la~~~~~~g~~VLdIGcG~G~~a~~~a~~~--~~~v~~id~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~  117 (229)
T d1zx0a1          42 YMHALAAAASSKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTL  117 (229)
T ss_dssp             HHHHHHHHHTTTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGS
T ss_pred             HHHHHHHhhccCCCeEEEeeccchHHHHHHHHcC--CCeEEEeCCCHHHHHHHHHHhhhcc--ccccccccccccccccc
Confidence            44444432  356699999999999999999863  3589999999999999999987654  46788889887765554


Q ss_pred             hhcccCCCceeEEEEeCCc--------cchHHHHHHHHhccCcCeEEEEeccccCcc
Q 029764           89 LKYSENEGSFDYAFVDADK--------DNYCNYHERLMKLLKVGGIAVYDNTLWGGT  137 (188)
Q Consensus        89 ~~~~~~~~~~D~i~id~~~--------~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~  137 (188)
                           ..++||.|++|...        .+...+++++.++|||||++++.+....+.
T Consensus       118 -----~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~~~~~~~  169 (229)
T d1zx0a1         118 -----PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGE  169 (229)
T ss_dssp             -----CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHH
T ss_pred             -----ccccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEEecCCcch
Confidence                 25789999988522        234568899999999999999977665544

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.68  E-value=2.9e-16  Score=109.03  Aligned_cols=113  Identities=19%  Similarity=0.226  Sum_probs=92.3

Q ss_pred             HHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029764           10 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   89 (188)
Q Consensus        10 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   89 (188)
                      .++.++....++++|||+|||+|..++..+..-  ..+|+++|.++++++.++++++..+..++++++++|+.+.+... 
T Consensus         4 ~~fn~l~~~~~g~~vlDl~~GtG~~~iea~~rg--a~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~-   80 (152)
T d2esra1           4 AIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRG--MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL-   80 (152)
T ss_dssp             HHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTT--CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB-
T ss_pred             HHHHHHHhhCCCCeEEEcCCccCHHHHHHHHhC--cceeeeehhchhhhhhhhhhhhhcccccchhhhccccccccccc-
Confidence            445555556678999999999999999877653  35999999999999999999999999889999999998876543 


Q ss_pred             hcccCCCceeEEEEeCCc--cchHHHHHHHH--hccCcCeEEEEe
Q 029764           90 KYSENEGSFDYAFVDADK--DNYCNYHERLM--KLLKVGGIAVYD  130 (188)
Q Consensus        90 ~~~~~~~~~D~i~id~~~--~~~~~~~~~~~--~~L~~gG~lv~~  130 (188)
                           ..+||+||+|.+.  ......++.+.  ++|+++|.+++.
T Consensus        81 -----~~~fDiIf~DPPy~~~~~~~~l~~i~~~~~L~~~g~iiiE  120 (152)
T d2esra1          81 -----TGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCE  120 (152)
T ss_dssp             -----CSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             -----ccccceeEechhhccchHHHHHHHHHHCCCcCCCeEEEEE
Confidence                 5789999999753  23456666664  579999999985

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.67  E-value=3.9e-16  Score=119.07  Aligned_cols=107  Identities=10%  Similarity=0.134  Sum_probs=91.5

Q ss_pred             HHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764           16 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      +...++.+|||||||.|..+.++|+..  ++++++++++++.++.+++.+...++.+++++...|....          .
T Consensus        57 l~l~~G~~VLDiGCG~G~~~~~~a~~~--g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~----------~  124 (291)
T d1kpia_          57 LNLEPGMTLLDIGCGWGSTMRHAVAEY--DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF----------D  124 (291)
T ss_dssp             TCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC----------C
T ss_pred             cCCCCCCEEEEecCcchHHHHHHHHhc--CcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccc----------c
Confidence            356788899999999999999999875  5799999999999999999999999999999988886321          5


Q ss_pred             CceeEEEEeCCc------------cchHHHHHHHHhccCcCeEEEEecccc
Q 029764           96 GSFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        96 ~~~D~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      ++||.|+.-...            .++..+++.+.++|||||.++++....
T Consensus       125 ~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~  175 (291)
T d1kpia_         125 EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITI  175 (291)
T ss_dssp             CCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEEC
T ss_pred             cccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEec
Confidence            799999976422            346789999999999999999987664

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.67  E-value=1.1e-15  Score=118.39  Aligned_cols=115  Identities=23%  Similarity=0.312  Sum_probs=95.0

Q ss_pred             HHHHH-cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcc
Q 029764           14 MLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS   92 (188)
Q Consensus        14 ~l~~~-~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~   92 (188)
                      ++... .++++|||+|||+|..++.+|..-  ..+|+++|+++++++.+++|++.+|+.++++++++|+.+.+..+... 
T Consensus       138 ~~~~~~~~g~~VLDl~~g~G~~si~~a~~g--a~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~-  214 (324)
T d2as0a2         138 ALEKWVQPGDRVLDVFTYTGGFAIHAAIAG--ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKK-  214 (324)
T ss_dssp             HHGGGCCTTCEEEETTCTTTHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHT-
T ss_pred             HHHhhcCCCCeeecccCcccchhhhhhhcC--CcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhc-
Confidence            33443 457899999999999999998762  35899999999999999999999999888999999999887666543 


Q ss_pred             cCCCceeEEEEeCCc------------cchHHHHHHHHhccCcCeEEEEeccc
Q 029764           93 ENEGSFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        93 ~~~~~~D~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                        ..+||+|++|.+.            ..+..++..+.++|+|||.|++....
T Consensus       215 --~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s  265 (324)
T d2as0a2         215 --GEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS  265 (324)
T ss_dssp             --TCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred             --cCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence              5789999999642            13556788888999999999987544

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.66  E-value=1.9e-16  Score=118.00  Aligned_cols=99  Identities=17%  Similarity=0.216  Sum_probs=81.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++++|||+|||+|..+..+++.   +.+++|+|+|+++++.|++++...+.  +++++++|+.+..  +      .++|
T Consensus        36 ~~~~~vLDiGCG~G~~~~~l~~~---g~~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~d~~~~~--~------~~~f  102 (246)
T d1y8ca_          36 LVFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLN--I------NRKF  102 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCC--C------SCCE
T ss_pred             CCCCeEEEEeCcCCHHHHHHHHh---CCccEeeccchhhhhhccccccccCc--cceeeccchhhhc--c------cccc
Confidence            45679999999999999999986   56999999999999999999887764  5899999987641  1      4689


Q ss_pred             eEEEEeC-------CccchHHHHHHHHhccCcCeEEEEe
Q 029764           99 DYAFVDA-------DKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        99 D~i~id~-------~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      |+|++-.       ...+...+++.+.++|+|||.++++
T Consensus       103 D~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  141 (246)
T d1y8ca_         103 DLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             EEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             cccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence            9999742       1234567899999999999999974

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.66  E-value=1.8e-16  Score=116.54  Aligned_cols=108  Identities=21%  Similarity=0.286  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029764            6 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   85 (188)
Q Consensus         6 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   85 (188)
                      ...+.+++ .+...++.+|||||||+|+.|..+++.   .++|+++|.+++.++.|++++.+.   +++.++++|.....
T Consensus        57 ~~~a~ml~-~L~l~~g~~VLdIG~GsGy~ta~La~l---~~~V~aiE~~~~~~~~A~~~~~~~---~nv~~~~~d~~~g~  129 (224)
T d1vbfa_          57 NLGIFMLD-ELDLHKGQKVLEIGTGIGYYTALIAEI---VDKVVSVEINEKMYNYASKLLSYY---NNIKLILGDGTLGY  129 (224)
T ss_dssp             HHHHHHHH-HTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTC---SSEEEEESCGGGCC
T ss_pred             hhHHHHHH-HhhhcccceEEEecCCCCHHHHHHHHH---hcccccccccHHHHHHHHHHHhcc---cccccccCchhhcc
Confidence            33455554 557889999999999999999999986   469999999999999999987653   47999999986543


Q ss_pred             HHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           86 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        86 ~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      +.       .++||.|++.+......   +.+.++|++||.||+.
T Consensus       130 ~~-------~~pfD~Iiv~~a~~~ip---~~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         130 EE-------EKPYDRVVVWATAPTLL---CKPYEQLKEGGIMILP  164 (224)
T ss_dssp             GG-------GCCEEEEEESSBBSSCC---HHHHHTEEEEEEEEEE
T ss_pred             hh-------hhhHHHHHhhcchhhhh---HHHHHhcCCCCEEEEE
Confidence            32       37899999987554432   4467889999999983

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.66  E-value=4.1e-16  Score=118.59  Aligned_cols=108  Identities=9%  Similarity=0.119  Sum_probs=92.9

Q ss_pred             HHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           15 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        15 l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      .+...++.+|||||||.|..++++|+..  +++|++|+++++.++.|++.++..++.+++++..+|..+.          
T Consensus        57 ~l~l~~G~~VLDiGCG~G~~a~~~a~~~--g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~----------  124 (285)
T d1kpga_          57 KLGLQPGMTLLDVGCGWGATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF----------  124 (285)
T ss_dssp             TTTCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC----------
T ss_pred             HcCCCCCCEEEEecCcchHHHHHHHhcC--CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc----------
Confidence            3457788899999999999999999985  6899999999999999999999999999999999997533          


Q ss_pred             CCceeEEEEeCC-----ccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           95 EGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        95 ~~~~D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      .++||.|+.-..     ..++..+++.+.++|+|||.+++.+...
T Consensus       125 ~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~  169 (285)
T d1kpga_         125 DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITG  169 (285)
T ss_dssp             CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred             cccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEec
Confidence            478999987642     2456789999999999999999987653

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.66  E-value=4.1e-16  Score=118.47  Aligned_cols=112  Identities=10%  Similarity=0.157  Sum_probs=92.6

Q ss_pred             HHHHHHH---HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764           10 QLMAMLL---RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   86 (188)
Q Consensus        10 ~~l~~l~---~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   86 (188)
                      +.+..++   ...++.+|||||||.|..+..+++..  +++|+++|++++.++.|++.+++.++..++.+...|..+.  
T Consensus        39 ~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~--g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~--  114 (280)
T d2fk8a1          39 AKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF--  114 (280)
T ss_dssp             HHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC--
T ss_pred             HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhC--ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh--
Confidence            3345554   45678899999999999999998875  5799999999999999999999999988888888886533  


Q ss_pred             HHhhcccCCCceeEEEEeCC-----ccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           87 QLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        87 ~~~~~~~~~~~~D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                              .++||.|++-..     ..++..+++.+.++|||||.+++....
T Consensus       115 --------~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~  158 (280)
T d2fk8a1         115 --------AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSV  158 (280)
T ss_dssp             --------CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             --------ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEee
Confidence                    478999987642     245678999999999999999997644

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=3.7e-17  Score=120.27  Aligned_cols=119  Identities=14%  Similarity=0.174  Sum_probs=92.1

Q ss_pred             CCCcHHHHHHHHHHH-HHcCCCEEEEEcccchHHHHHHHhhCC-----CCCEEEEEeCCchhHHHHHHHHHhcCC----C
Q 029764            2 MGTAPDAGQLMAMLL-RLVNAKKTIEIGVFTGYSLLLTALTIP-----EDGQITAIDVNRETYEIGLPIIKKAGV----D   71 (188)
Q Consensus         2 ~~~~~~~~~~l~~l~-~~~~~~~vLeiG~g~G~~~~~la~~~~-----~~~~v~~iD~~~~~~~~a~~~~~~~~~----~   71 (188)
                      |+.+.-.+++++.|. +..++.+|||||||+|+.+..+++...     .+.+|+++|.+++.++.|++++...++    .
T Consensus        61 is~P~~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~  140 (223)
T d1r18a_          61 ISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDS  140 (223)
T ss_dssp             ECCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eehhhhHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCc
Confidence            345566788888764 567888999999999999999987642     235899999999999999998765432    1


Q ss_pred             CcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           72 HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        72 ~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      .++.++++|..+..+.       .++||.|++.+......   +.+.+.|++||.+|+.
T Consensus       141 ~nv~~~~~d~~~~~~~-------~~~fD~Iiv~~a~~~~p---~~l~~~Lk~gG~lV~p  189 (223)
T d1r18a_         141 GQLLIVEGDGRKGYPP-------NAPYNAIHVGAAAPDTP---TELINQLASGGRLIVP  189 (223)
T ss_dssp             TSEEEEESCGGGCCGG-------GCSEEEEEECSCBSSCC---HHHHHTEEEEEEEEEE
T ss_pred             cEEEEEeccccccccc-------ccceeeEEEEeechhch---HHHHHhcCCCcEEEEE
Confidence            4699999998764333       47899999998665543   3467899999999873

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.65  E-value=3.4e-16  Score=114.62  Aligned_cols=103  Identities=15%  Similarity=0.180  Sum_probs=83.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .+..+|||||||+|..+..+++.   +.+|+++|+++++++.|++++...+.  ++.++.+|+.+. + +     ..++|
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~~---~~~v~giD~S~~~i~~ak~~~~~~~~--~~~~~~~d~~~l-~-~-----~~~~f  103 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLEDY---GFEVVGVDISEDMIRKAREYAKSRES--NVEFIVGDARKL-S-F-----EDKTF  103 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEECCTTSC-C-S-----CTTCE
T ss_pred             CCCCEEEEECCCcchhhhhHhhh---hcccccccccccchhhhhhhhccccc--cccccccccccc-c-c-----cCcCc
Confidence            55679999999999999999985   67999999999999999999887663  467888888664 1 1     25799


Q ss_pred             eEEEEeCCc-----cchHHHHHHHHhccCcCeEEEEeccc
Q 029764           99 DYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        99 D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      |+|++....     .+...+++.+.++|||||.+++....
T Consensus       104 D~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1         104 DYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             EEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             eEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence            999987532     24567899999999999999887544

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.65  E-value=7.7e-16  Score=111.69  Aligned_cols=103  Identities=15%  Similarity=0.290  Sum_probs=86.8

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   99 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   99 (188)
                      +...|||||||+|..++.+|+..| +..++++|+++.++..|.++..+.++. |+.++++|+.+....+     ..+++|
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~p-~~~~iGiD~~~~~i~~a~~~~~~~~l~-Nv~~~~~Da~~l~~~~-----~~~~~d  101 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQNP-DINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLTDVF-----EPGEVK  101 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHHHHC-----CTTSCC
T ss_pred             CCceEEEEEecCcHHHHHHHHhCC-CCcEEEeecchHHHHHHHHHHHHHhcc-Cchhcccchhhhhccc-----Cchhhh
Confidence            345899999999999999999987 899999999999999999999999985 6999999998766444     257899


Q ss_pred             EEEEeCC---ccc--------hHHHHHHHHhccCcCeEEEE
Q 029764          100 YAFVDAD---KDN--------YCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus       100 ~i~id~~---~~~--------~~~~~~~~~~~L~~gG~lv~  129 (188)
                      .|++..+   +..        ...+++.+.++|||||.+.+
T Consensus       102 ~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i  142 (204)
T d2fcaa1         102 RVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHF  142 (204)
T ss_dssp             EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEE
T ss_pred             ccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEE
Confidence            9987642   211        15799999999999999877

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.65  E-value=2.6e-16  Score=114.89  Aligned_cols=114  Identities=18%  Similarity=0.301  Sum_probs=91.5

Q ss_pred             CCcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchH
Q 029764            3 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   82 (188)
Q Consensus         3 ~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   82 (188)
                      +.+...+++++ .++..++.+|||||||+|+.+..+++..  +++|+++|.+++.++.|++++.+.++. ++.++++|..
T Consensus        62 s~P~~~a~ml~-~L~l~~g~~VLeIGsGsGY~taila~l~--g~~V~~ie~~~~l~~~a~~~l~~~g~~-nv~~~~gd~~  137 (215)
T d1jg1a_          62 SAPHMVAIMLE-IANLKPGMNILEVGTGSGWNAALISEIV--KTDVYTIERIPELVEFAKRNLERAGVK-NVHVILGDGS  137 (215)
T ss_dssp             CCHHHHHHHHH-HHTCCTTCCEEEECCTTSHHHHHHHHHH--CSCEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGG
T ss_pred             hhhhhHHHHHH-hhccCccceEEEecCCCChhHHHHHHhh--CceeEEEeccHHHHHHHHHHHHHcCCc-eeEEEECccc
Confidence            33444566665 5578889999999999999999998764  468999999999999999999999875 6999999987


Q ss_pred             HHHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           83 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        83 ~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      +..+.       .++||.|++.+......   +.+...|++||.+|+.
T Consensus       138 ~g~~~-------~~pfD~Iiv~~a~~~ip---~~l~~qL~~gGrLv~p  175 (215)
T d1jg1a_         138 KGFPP-------KAPYDVIIVTAGAPKIP---EPLIEQLKIGGKLIIP  175 (215)
T ss_dssp             GCCGG-------GCCEEEEEECSBBSSCC---HHHHHTEEEEEEEEEE
T ss_pred             cCCcc-------cCcceeEEeecccccCC---HHHHHhcCCCCEEEEE
Confidence            64433       48999999987655433   2356789999999973

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.65  E-value=2.4e-16  Score=113.11  Aligned_cols=121  Identities=10%  Similarity=0.013  Sum_probs=90.9

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCC-----------CC
Q 029764            4 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV-----------DH   72 (188)
Q Consensus         4 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~-----------~~   72 (188)
                      ..+...+++..| ...++.+|||+|||+|..+.+||+.   +.+|+++|+++++++.|++.....+.           ..
T Consensus         5 ~~~~~~~~~~~l-~~~~~~rvLd~GCG~G~~a~~la~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~   80 (201)
T d1pjza_           5 VNKDLQQYWSSL-NVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAP   80 (201)
T ss_dssp             STHHHHHHHHHH-CCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECS
T ss_pred             HHHHHHHHHHHc-CCCCCCEEEEecCcCCHHHHHHHHc---CCceEeecccHHHHHHHHHHhccccchhhhhhhhhcccc
Confidence            345566666654 5667789999999999999999986   78999999999999999998755432           13


Q ss_pred             cEEEEEcchHHHHHHHhhcccCCCceeEEEEeCC-----ccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           73 KINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        73 ~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      .++++.+|..+..+..      ...||+|+....     .......++.+.+.|||||.+++....+
T Consensus        81 ~~~~~~~d~~~l~~~~------~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~  141 (201)
T d1pjza_          81 GIEIWCGDFFALTARD------IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEY  141 (201)
T ss_dssp             SSEEEEECCSSSTHHH------HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESS
T ss_pred             ccceeccccccccccc------ccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEccc
Confidence            4577888876643332      368999987642     2335678899999999999887754443

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.65  E-value=1e-15  Score=118.23  Aligned_cols=112  Identities=22%  Similarity=0.323  Sum_probs=92.9

Q ss_pred             HHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           15 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        15 l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      +....++++|||++||+|..++.+|..   +.+|+++|.++.+++.+++|++.+|+. +++++++|+.+.+..+...   
T Consensus       140 ~~~~~~g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl~-~~~~i~~d~~~~~~~~~~~---  212 (318)
T d1wxxa2         140 YMERFRGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDLLRRLEKE---  212 (318)
T ss_dssp             HGGGCCEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHHHHHHHHHT---
T ss_pred             HHHHhCCCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCCC-CcceeeccHHHHhhhhHhh---
Confidence            345567889999999999999998875   569999999999999999999999985 5999999999987766543   


Q ss_pred             CCceeEEEEeCCc------------cchHHHHHHHHhccCcCeEEEEeccc
Q 029764           95 EGSFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        95 ~~~~D~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      .++||+|++|.+.            ..+..++..+.++|+|||.|++....
T Consensus       213 ~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs  263 (318)
T d1wxxa2         213 GERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS  263 (318)
T ss_dssp             TCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             hcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            5799999999642            12446778888999999999986544

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.64  E-value=2.1e-15  Score=107.55  Aligned_cols=119  Identities=13%  Similarity=0.132  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764            7 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   86 (188)
Q Consensus         7 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   86 (188)
                      -...+..++.....+.+|||++||+|..++..+..-  ..+|++||.++++++.+++|++..+..++++++++|+.+.+.
T Consensus        28 vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srG--a~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~  105 (182)
T d2fhpa1          28 VKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRG--MDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALE  105 (182)
T ss_dssp             HHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEEcccccccccceeeecc--hhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhh
Confidence            334444555445678899999999999999888753  348999999999999999999999988889999999999887


Q ss_pred             HHhhcccCCCceeEEEEeCCc--cchHHHHHHHH--hccCcCeEEEEe
Q 029764           87 QLLKYSENEGSFDYAFVDADK--DNYCNYHERLM--KLLKVGGIAVYD  130 (188)
Q Consensus        87 ~~~~~~~~~~~~D~i~id~~~--~~~~~~~~~~~--~~L~~gG~lv~~  130 (188)
                      .+...   ..+||+||+|.+.  ..+...++.+.  .+|+++|++++.
T Consensus       106 ~~~~~---~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~giIi~E  150 (182)
T d2fhpa1         106 QFYEE---KLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCE  150 (182)
T ss_dssp             HHHHT---TCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             hhccc---CCCcceEEechhhhhhHHHHHHHHHHHCCCCCCCEEEEEE
Confidence            76433   4689999999753  45677788775  479999999985

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.64  E-value=7.2e-16  Score=111.34  Aligned_cols=111  Identities=17%  Similarity=0.225  Sum_probs=89.3

Q ss_pred             HHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029764           10 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   89 (188)
Q Consensus        10 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   89 (188)
                      .++.. +...++.+|||||||+|..+.++++.   +.+|+++|+++.+++.++++.+..+++ ++++...|..+...   
T Consensus        21 ~~~~~-~~~~~~grvLDiGcG~G~~~~~la~~---g~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~d~~~~~~---   92 (198)
T d2i6ga1          21 DVLAA-AKVVAPGRTLDLGCGNGRNSLYLAAN---GYDVTAWDKNPASMANLERIKAAEGLD-NLQTDLVDLNTLTF---   92 (198)
T ss_dssp             HHHHH-HTTSCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEECCTTTCCC---
T ss_pred             HHHHH-cccCCCCcEEEECCCCCHHHHHHHHH---hhhhccccCcHHHHHHHHHHhhhcccc-chhhhheecccccc---
Confidence            34443 34556779999999999999999986   669999999999999999999888875 58899998765421   


Q ss_pred             hcccCCCceeEEEEeCC-----ccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           90 KYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        90 ~~~~~~~~~D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                           .++||+|++...     ......+++.+.++|+|||.+++....
T Consensus        93 -----~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~  136 (198)
T d2i6ga1          93 -----DGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAM  136 (198)
T ss_dssp             -----CCCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             -----cccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence                 478999998742     234567999999999999999886543

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=1.3e-15  Score=114.93  Aligned_cols=117  Identities=20%  Similarity=0.277  Sum_probs=95.0

Q ss_pred             CcHHHHHHHHHHHHHc--CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch
Q 029764            4 TAPDAGQLMAMLLRLV--NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   81 (188)
Q Consensus         4 ~~~~~~~~l~~l~~~~--~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   81 (188)
                      -.|++..++...+...  ++.+|||+|||+|..++.++...| +.+|+++|+++++++.|++|++.+++. +++++++|.
T Consensus        90 PRpeTE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p-~~~v~avDis~~Al~~A~~Na~~~~~~-~v~~~~~d~  167 (274)
T d2b3ta1          90 PRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERP-DCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDW  167 (274)
T ss_dssp             CCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCT-TSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCST
T ss_pred             cccchhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhCC-cceeeeccchhHHHhHHHHHHHHhCcc-cceeeeccc
Confidence            3578888887665543  345899999999999999999987 899999999999999999999999984 699999998


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCc----------------------------cchHHHHHHHHhccCcCeEEEEe
Q 029764           82 LSVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        82 ~~~~~~~~~~~~~~~~~D~i~id~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      .+.++        ..+||+|+.+.+.                            ..+..+++.+.++|++||.+++.
T Consensus       168 ~~~~~--------~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lE  236 (274)
T d2b3ta1         168 FSALA--------GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE  236 (274)
T ss_dssp             TGGGT--------TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             ccccC--------CCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEE
Confidence            76432        3689999987421                            11345677778999999999985

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.62  E-value=5.9e-16  Score=115.85  Aligned_cols=105  Identities=12%  Similarity=0.106  Sum_probs=84.2

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..++++|||+|||+|..+..+++.-  ..+|+|||+++++++.|+++....+...++.++++|+......      ..++
T Consensus        22 ~~~~~~VLDlGCG~G~~~~~~~~~~--~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~------~~~~   93 (252)
T d1ri5a_          22 TKRGDSVLDLGCGKGGDLLKYERAG--IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD------LGKE   93 (252)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHT--CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC------CSSC
T ss_pred             CCCcCEEEEecccCcHHHHHHHHcC--CCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhccc------cccc
Confidence            4567899999999999988888762  3589999999999999999988877777899999998543111      1468


Q ss_pred             eeEEEEeCCc-------cchHHHHHHHHhccCcCeEEEEe
Q 029764           98 FDYAFVDADK-------DNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        98 ~D~i~id~~~-------~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ||+|++....       .....++.++.++|+|||++++.
T Consensus        94 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~  133 (252)
T d1ri5a_          94 FDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT  133 (252)
T ss_dssp             EEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence            9999986432       23357889999999999999884

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.61  E-value=9.4e-16  Score=114.88  Aligned_cols=106  Identities=14%  Similarity=0.165  Sum_probs=88.6

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..+.++|||||||+|..+..+++..| +.+++++|+ +++++.+++++...++.++++++.+|..+.         ...+
T Consensus        78 ~~~~~~VLDvGcG~G~~~~~la~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~---------~~~~  146 (253)
T d1tw3a2          78 WTNVRHVLDVGGGKGGFAAAIARRAP-HVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP---------LPRK  146 (253)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC---------CSSC
T ss_pred             CccCCEEEEeCCCCCHHHHHHHHhcc-eeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh---------cccc
Confidence            35668999999999999999999987 889999998 789999999999999999999999997542         1367


Q ss_pred             eeEEEEeCCc-----cchHHHHHHHHhccCcCeEEEEecccc
Q 029764           98 FDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        98 ~D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      ||+|++....     +....+++++.+.|||||.+++.+...
T Consensus       147 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~  188 (253)
T d1tw3a2         147 ADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDD  188 (253)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCB
T ss_pred             hhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccC
Confidence            9999987432     223467899999999999998876543

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.3e-16  Score=115.12  Aligned_cols=107  Identities=12%  Similarity=0.152  Sum_probs=85.5

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..+..+|||+|||+|..+..++...  ..+|+++|+++++++.|++++...+. .+++++++|+.+..  +     ..++
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~ak~~~~~~~~-~~~~f~~~d~~~~~--~-----~~~~  127 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGK-RVRNYFCCGLQDFT--P-----EPDS  127 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGG-GEEEEEECCGGGCC--C-----CSSC
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhc--CCEEEEeecCHHHhhccccccccccc-cccccccccccccc--c-----cccc
Confidence            4456799999999999999887654  35899999999999999999887665 35899999997642  1     2579


Q ss_pred             eeEEEEeCCccc-----hHHHHHHHHhccCcCeEEEEecccc
Q 029764           98 FDYAFVDADKDN-----YCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        98 ~D~i~id~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      ||+|++.....+     ...+++.+.+.|+|||.+++.+...
T Consensus       128 fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~  169 (222)
T d2ex4a1         128 YDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMA  169 (222)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             ccccccccccccchhhhhhhHHHHHHHhcCCcceEEEEEccc
Confidence            999998753322     3468999999999999999876554

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.61  E-value=9e-15  Score=112.68  Aligned_cols=113  Identities=11%  Similarity=0.190  Sum_probs=94.1

Q ss_pred             HHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCC-CcEEEEEcchHHHHHHHhhcccC
Q 029764           16 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      ....++++|||++||+|..++.++..-  ..+|+++|+++..++.+++|++.+++. .+++++++|+.+.+..+...   
T Consensus       140 ~~~~~g~~VLdlf~~~G~~sl~aa~~g--a~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~---  214 (317)
T d2b78a2         140 NGSAAGKTVLNLFSYTAAFSVAAAMGG--AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRH---  214 (317)
T ss_dssp             HTTTBTCEEEEETCTTTHHHHHHHHTT--BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHT---
T ss_pred             HHhhCCCceeecCCCCcHHHHHHHhCC--CceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhh---
Confidence            345678899999999999999887642  358999999999999999999999985 57999999999998876644   


Q ss_pred             CCceeEEEEeCCc------------cchHHHHHHHHhccCcCeEEEEeccc
Q 029764           95 EGSFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        95 ~~~~D~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      ..+||+|++|.+.            ..+.+++..+.++|+|||+|++....
T Consensus       215 ~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs  265 (317)
T d2b78a2         215 HLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA  265 (317)
T ss_dssp             TCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             cCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            5789999999642            23567888889999999999986543

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.61  E-value=8.9e-15  Score=111.73  Aligned_cols=110  Identities=15%  Similarity=0.221  Sum_probs=89.0

Q ss_pred             HHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCC-cEEEEEcchHHHHHHHhhccc
Q 029764           15 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLDQLLKYSE   93 (188)
Q Consensus        15 l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~   93 (188)
                      +....++++|||++||+|..++.++..   +.+|++||.++.+++.|++|++.+++.+ +++++++|+.+++......  
T Consensus       127 ~~~~~~~~rVLdlf~~tG~~sl~aa~~---GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~--  201 (309)
T d2igta1         127 VETADRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERR--  201 (309)
T ss_dssp             HHHSSSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHH--
T ss_pred             HhhccCCCeEEEecCCCcHHHHHHHhC---CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhc--
Confidence            334567889999999999999998875   5699999999999999999999998874 6999999999988776544  


Q ss_pred             CCCceeEEEEeCCc-------------cchHHHHHHHHhccCcCeEEEEe
Q 029764           94 NEGSFDYAFVDADK-------------DNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        94 ~~~~~D~i~id~~~-------------~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                       ...||+|++|.+.             ..+..+++.+.++|+|||.+++.
T Consensus       202 -~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~  250 (309)
T d2igta1         202 -GSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVL  250 (309)
T ss_dssp             -TCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEE
T ss_pred             -CCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence             5789999999541             12344556778899999865544

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.60  E-value=1.9e-15  Score=110.06  Aligned_cols=107  Identities=17%  Similarity=0.172  Sum_probs=85.8

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      ...|+.+|||+|||+|+.+..++...+ +++|+++|+++++++.++++.+..+   ++.++.+|+.+.....    ....
T Consensus        53 ~lkpg~~VLDlGcG~G~~~~~la~~v~-~g~V~gvDis~~~i~~a~~~a~~~~---ni~~i~~d~~~~~~~~----~~~~  124 (209)
T d1nt2a_          53 KLRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRERN---NIIPLLFDASKPWKYS----GIVE  124 (209)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHCS---SEEEECSCTTCGGGTT----TTCC
T ss_pred             CCCCCCEEEEeCCcCCHHHHHHHHhcc-CCeEEEEeCCHHHHHHHHHHhhccC---CceEEEeeccCccccc----cccc
Confidence            356778999999999999999999887 6799999999999999999887754   7899999876531111    1235


Q ss_pred             ceeEEEEeC-CccchHHHHHHHHhccCcCeEEEEec
Q 029764           97 SFDYAFVDA-DKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        97 ~~D~i~id~-~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      .+|+||.+. .+.....++.++.+.|||||.+++.+
T Consensus       125 ~vd~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         125 KVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             CEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEEEecccChhhHHHHHHHHHHHhccCCeEEEEE
Confidence            688888874 34556778999999999999998754

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.2e-15  Score=111.22  Aligned_cols=121  Identities=8%  Similarity=0.004  Sum_probs=93.7

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcC---------------
Q 029764            5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG---------------   69 (188)
Q Consensus         5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~---------------   69 (188)
                      .+...+.+..++...++.+|||+|||.|..+.+||+.   +.+|++||+++++++.|++.....+               
T Consensus        30 ~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~---G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~  106 (229)
T d2bzga1          30 HQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADR---GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFK  106 (229)
T ss_dssp             CHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEE
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceee
Confidence            3445566667777778889999999999999999985   7799999999999999988754321               


Q ss_pred             -CCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeC-----CccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           70 -VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        70 -~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                       ...+++++++|..+..+.      ..+.||+|+...     .+.....+++.+.++|||||.+++....+
T Consensus       107 ~~~~~v~~~~~d~~~l~~~------~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~  171 (229)
T d2bzga1         107 SSSGNISLYCCSIFDLPRT------NIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSY  171 (229)
T ss_dssp             ETTSSEEEEESCGGGGGGS------CCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEEC
T ss_pred             ecCCcEEEEEcchhhcccc------ccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEccc
Confidence             124688999998765332      257899998653     33556788999999999999877765444

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=8.3e-15  Score=111.74  Aligned_cols=116  Identities=15%  Similarity=0.194  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCC---CcEEEEEcchHHHH
Q 029764            9 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD---HKINFIESEALSVL   85 (188)
Q Consensus         9 ~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~---~~~~~~~~d~~~~~   85 (188)
                      ..++..++...++++|||+|||+|..+..+++.   +.+|+++|+++++++.|+++....+..   ....+...+.....
T Consensus        45 ~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~---g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (292)
T d1xvaa_          45 KAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD  121 (292)
T ss_dssp             HHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH
T ss_pred             HHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHc---CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccc
Confidence            345555566667789999999999999999985   669999999999999999988776543   12345556654432


Q ss_pred             HHHhhcccCCCceeEEEEeCC-----------ccchHHHHHHHHhccCcCeEEEEec
Q 029764           86 DQLLKYSENEGSFDYAFVDAD-----------KDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        86 ~~~~~~~~~~~~~D~i~id~~-----------~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      ..+    +..++||+|++...           ..+...+++++.++|||||+++++-
T Consensus       122 ~~~----~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  174 (292)
T d1xvaa_         122 KDV----PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH  174 (292)
T ss_dssp             HHS----CCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccc----CCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence            222    12468999987531           1235678999999999999999964

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.59  E-value=1.6e-15  Score=111.62  Aligned_cols=104  Identities=15%  Similarity=0.166  Sum_probs=84.0

Q ss_pred             HHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhc
Q 029764           12 MAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY   91 (188)
Q Consensus        12 l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   91 (188)
                      +..+....++.+|||||||+|..+..++..   +.+|++||+++++++.|+++.     .+++.+++++..+..      
T Consensus        12 ~~~~~~~~~~~~VLDiGcG~G~~~~~l~~~---g~~v~giD~s~~~i~~a~~~~-----~~~~~~~~~~~~~~~------   77 (225)
T d2p7ia1          12 VRAFTPFFRPGNLLELGSFKGDFTSRLQEH---FNDITCVEASEEAISHAQGRL-----KDGITYIHSRFEDAQ------   77 (225)
T ss_dssp             HHHHGGGCCSSCEEEESCTTSHHHHHHTTT---CSCEEEEESCHHHHHHHHHHS-----CSCEEEEESCGGGCC------
T ss_pred             HHHhhhhCCCCcEEEEeCCCcHHHHHHHHc---CCeEEEEeCcHHHhhhhhccc-----ccccccccccccccc------
Confidence            455666778899999999999999999875   458999999999999998764     246899999886542      


Q ss_pred             ccCCCceeEEEEeC---CccchHHHHHHHH-hccCcCeEEEEec
Q 029764           92 SENEGSFDYAFVDA---DKDNYCNYHERLM-KLLKVGGIAVYDN  131 (188)
Q Consensus        92 ~~~~~~~D~i~id~---~~~~~~~~~~~~~-~~L~~gG~lv~~~  131 (188)
                        ..++||+|++..   +..+...++..+. ++|+|||.+++.-
T Consensus        78 --~~~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~  119 (225)
T d2p7ia1          78 --LPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVC  119 (225)
T ss_dssp             --CSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             --cccccccccccceeEecCCHHHHHHHHHHHhcCCCceEEEEe
Confidence              147899999875   3355677888887 7899999999864

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.59  E-value=1.1e-14  Score=102.75  Aligned_cols=114  Identities=14%  Similarity=0.162  Sum_probs=81.9

Q ss_pred             HHHHHHHHHH-cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029764            9 GQLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   87 (188)
Q Consensus         9 ~~~l~~l~~~-~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   87 (188)
                      +.+..++... .++.+|||+|||+|..++..+..   +.+++++|.++++++.+++|++..++.+++  ...++..++..
T Consensus        29 e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~---ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v--~~~~~d~~~~~  103 (171)
T d1ws6a1          29 KALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASE---GWEAVLVEKDPEAVRLLKENVRRTGLGARV--VALPVEVFLPE  103 (171)
T ss_dssp             HHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHT---TCEEEEECCCHHHHHHHHHHHHHHTCCCEE--ECSCHHHHHHH
T ss_pred             HHHHHHhhccccCCCeEEEeccccchhhhhhhhc---cchhhhcccCHHHHhhhhHHHHhhccccce--eeeehhccccc
Confidence            3344445433 56789999999999999987775   668999999999999999999999987654  44554443333


Q ss_pred             HhhcccCCCceeEEEEeCCc-cchHHHHHHHH--hccCcCeEEEEe
Q 029764           88 LLKYSENEGSFDYAFVDADK-DNYCNYHERLM--KLLKVGGIAVYD  130 (188)
Q Consensus        88 ~~~~~~~~~~~D~i~id~~~-~~~~~~~~~~~--~~L~~gG~lv~~  130 (188)
                      ...   ...+||+||+|.+. .+..+.+..+.  .+|++||++++.
T Consensus       104 ~~~---~~~~fD~If~DPPY~~~~~~~l~~l~~~~ll~~~g~ivie  146 (171)
T d1ws6a1         104 AKA---QGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQ  146 (171)
T ss_dssp             HHH---TTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEE
T ss_pred             ccc---cCCccceeEEccccccCHHHHHHHHHHcCCcCCCeEEEEE
Confidence            221   25789999999642 23334444443  589999999985

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.59  E-value=2.4e-15  Score=112.67  Aligned_cols=104  Identities=9%  Similarity=0.105  Sum_probs=81.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .+..+|||+|||+|..+..++...  ..+|+++|+++++++.|++++...   ++++++++|..++-  +     ..++|
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~~--~~~v~~vD~s~~~l~~a~~~~~~~---~~~~~~~~d~~~~~--~-----~~~~f  159 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETAT--L-----PPNTY  159 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCC--C-----CSSCE
T ss_pred             CCCCeEEEecccCChhhHHHHhhc--CceEEEEcCCHHHHHhhhcccccc---ccceeEEccccccc--c-----CCCcc
Confidence            355699999999999999887653  248999999999999999886543   35889999986642  1     24789


Q ss_pred             eEEEEeCCcc-----chHHHHHHHHhccCcCeEEEEecccc
Q 029764           99 DYAFVDADKD-----NYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        99 D~i~id~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      |+|++.....     +...+++.+.+.|+|||.+++.+...
T Consensus       160 D~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~  200 (254)
T d1xtpa_         160 DLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCS  200 (254)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred             ceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCC
Confidence            9999875332     23478999999999999999976554

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.57  E-value=3.3e-15  Score=112.17  Aligned_cols=106  Identities=15%  Similarity=0.139  Sum_probs=89.4

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      ...++.+|||+|||+|..++.+|+..  .++|+++|++|.+++.+++|++.+++.++++++++|+.++..        .+
T Consensus       104 ~~~~g~~VlD~~aG~G~~~l~~a~~~--~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~--------~~  173 (260)
T d2frna1         104 VAKPDELVVDMFAGIGHLSLPIAVYG--KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--------EN  173 (260)
T ss_dssp             HCCTTCEEEETTCTTTTTHHHHHHHT--CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--------CS
T ss_pred             hcCCccEEEECcceEcHHHHHHHHhC--CcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc--------CC
Confidence            34678899999999999999999862  469999999999999999999999999999999999976532        46


Q ss_pred             ceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           97 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        97 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      .||.|+++..+ ....+++.+.++|++||++.+++..
T Consensus       174 ~~D~Ii~~~p~-~~~~~l~~a~~~l~~gG~lh~~~~~  209 (260)
T d2frna1         174 IADRILMGYVV-RTHEFIPKALSIAKDGAIIHYHNTV  209 (260)
T ss_dssp             CEEEEEECCCS-SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCCEEEECCCC-chHHHHHHHHhhcCCCCEEEEEecc
Confidence            89999998544 3356788889999999999776543

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.56  E-value=1.9e-14  Score=104.26  Aligned_cols=103  Identities=17%  Similarity=0.299  Sum_probs=85.8

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   99 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   99 (188)
                      ....|||||||.|..+..+|+..| +..++++|+++.++..|.+++.+.+++ |+.++.+|+.++...+     ...++|
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p-~~~~iGid~~~~~v~~a~~~~~~~~l~-Ni~~~~~da~~l~~~~-----~~~~~~  103 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGVP-NIKLLWVDGSDLTDYF-----EDGEID  103 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCCS-SEEEEECCSSCGGGTS-----CTTCCS
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCC-CCceEEEeccHHHHHHHHHhhhhhccc-cceeeecCHHHHhhhc-----cCCcee
Confidence            345799999999999999999987 899999999999999999999999986 6999999987654333     257899


Q ss_pred             EEEEeC---Cccc--------hHHHHHHHHhccCcCeEEEE
Q 029764          100 YAFVDA---DKDN--------YCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus       100 ~i~id~---~~~~--------~~~~~~~~~~~L~~gG~lv~  129 (188)
                      .|++..   ++..        ...+++.+.+.|+|||.+.+
T Consensus       104 ~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i  144 (204)
T d1yzha1         104 RLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHF  144 (204)
T ss_dssp             EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEE
T ss_pred             hhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEE
Confidence            998763   2211        26899999999999999876

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.55  E-value=2.9e-15  Score=110.92  Aligned_cols=98  Identities=18%  Similarity=0.220  Sum_probs=77.1

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..++.+|||+|||+|..+..+++.   +.+|+|+|+++.+++.|+++.    .   ..++.+++.+. + +     ..++
T Consensus        40 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~----~---~~~~~~~~~~l-~-~-----~~~~  102 (246)
T d2avna1          40 LKNPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKG----V---KNVVEAKAEDL-P-F-----PSGA  102 (246)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHT----C---SCEEECCTTSC-C-S-----CTTC
T ss_pred             cCCCCEEEEECCCCchhccccccc---ceEEEEeeccccccccccccc----c---ccccccccccc-c-c-----cccc
Confidence            335679999999999999999875   679999999999999999863    1   13567777653 1 1     2579


Q ss_pred             eeEEEEeC----CccchHHHHHHHHhccCcCeEEEEecc
Q 029764           98 FDYAFVDA----DKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        98 ~D~i~id~----~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      ||+|++-.    +..+...+++++.++|||||.+++...
T Consensus       103 fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~  141 (246)
T d2avna1         103 FEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVD  141 (246)
T ss_dssp             EEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEEC
Confidence            99999753    234677889999999999999998643

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=9.4e-14  Score=98.95  Aligned_cols=114  Identities=15%  Similarity=0.091  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029764            8 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   87 (188)
Q Consensus         8 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   87 (188)
                      ...+...+.....+.+|||++||+|..++..+..-  ..+|+.||.+++.++.+++|++..+.. ++.++.+|+.+.+..
T Consensus        31 re~lfn~l~~~~~~~~vLDlfaGsG~~giealsrG--a~~v~~VE~~~~a~~~~k~N~~~~~~~-~~~ii~~d~~~~l~~  107 (183)
T d2fpoa1          31 RETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRY--AAGATLIEMDRAVSQQLIKNLATLKAG-NARVVNSNAMSFLAQ  107 (183)
T ss_dssp             HHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCHHHHHSS
T ss_pred             HHHHHhhhhcccchhhhhhhhccccceeeeEEecC--cceeEEEEEeechhhHHHHHHhhcccc-ceeeeeecccccccc
Confidence            34455555556788899999999999999877652  358999999999999999999987764 589999999887643


Q ss_pred             HhhcccCCCceeEEEEeCCc--cchHHHHHHHH--hccCcCeEEEEe
Q 029764           88 LLKYSENEGSFDYAFVDADK--DNYCNYHERLM--KLLKVGGIAVYD  130 (188)
Q Consensus        88 ~~~~~~~~~~~D~i~id~~~--~~~~~~~~~~~--~~L~~gG~lv~~  130 (188)
                      .      ..+||+||+|.+.  ..+...++.+.  .+|+++|++++.
T Consensus       108 ~------~~~fDlIf~DPPY~~~~~~~~l~~l~~~~~L~~~~iIiiE  148 (183)
T d2fpoa1         108 K------GTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVE  148 (183)
T ss_dssp             C------CCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             c------ccccCEEEEcCccccchHHHHHHHHHHCCCCCCCeEEEEE
Confidence            2      5789999999753  34566777775  479999999985

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.53  E-value=1.7e-14  Score=106.37  Aligned_cols=108  Identities=16%  Similarity=0.078  Sum_probs=81.9

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..++.+|||+|||+|+.+..+|...+ +++|+++|+++.+++.+++.....   +++.++.+|+....... +   ....
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~~-~g~V~aVDiS~~~i~~a~~~a~~~---~ni~~i~~d~~~~~~~~-~---~~~~  143 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYA-N---IVEK  143 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGT-T---TCCC
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHhhh---cccceEEEeeccCcccc-c---ccce
Confidence            56778999999999999999999876 789999999999999999876543   36778888876543221 1   1234


Q ss_pred             eeEEEEeCC-ccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           98 FDYAFVDAD-KDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        98 ~D~i~id~~-~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      +|+++.+.. ......++.++.+.|||||.+++....
T Consensus       144 v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~  180 (230)
T d1g8sa_         144 VDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKA  180 (230)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             eEEeeccccchHHHHHHHHHHHHhcccCceEEEEeec
Confidence            555666543 445677899999999999998886543

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.53  E-value=1.6e-14  Score=106.26  Aligned_cols=106  Identities=17%  Similarity=0.181  Sum_probs=84.4

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ..++.+|||+|||+|..+..+|....++++|+++|+++++++.++++.+..+   ++..+..|+..... ..   .....
T Consensus        71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~---~~~~i~~d~~~~~~-~~---~~~~~  143 (227)
T d1g8aa_          71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR---NIVPILGDATKPEE-YR---ALVPK  143 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT---TEEEEECCTTCGGG-GT---TTCCC
T ss_pred             cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC---CceEEEEECCCccc-cc---ccccc
Confidence            5577899999999999999999988668999999999999999999876543   57777777643211 11   12468


Q ss_pred             eeEEEEeCCc-cchHHHHHHHHhccCcCeEEEEe
Q 029764           98 FDYAFVDADK-DNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        98 ~D~i~id~~~-~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      +|+||.|..+ .....+++++.+.|||||.+++.
T Consensus       144 vD~i~~d~~~~~~~~~~l~~~~~~LkpgG~lvi~  177 (227)
T d1g8aa_         144 VDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEEEccccchHHHHHHHHHHhcccCCeEEEE
Confidence            9999998644 45567899999999999998875

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=2e-14  Score=108.42  Aligned_cols=96  Identities=18%  Similarity=0.235  Sum_probs=78.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .++.+|||+|||+|..+..+++..+ +.+++++|+++.+++.|++..      +++++.++|+.+.  .+     ..++|
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~-~~~~~giD~s~~~~~~a~~~~------~~~~~~~~d~~~l--~~-----~~~sf  148 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALP-EITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRL--PF-----SDTSM  148 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCT-TSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSC--SB-----CTTCE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCC-CCEEEEecchHhhhhhhhccc------ccccceeeehhhc--cC-----CCCCE
Confidence            3566999999999999999999886 789999999999999988753      3689999998654  11     25789


Q ss_pred             eEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764           99 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      |+|+......+    ++++.++|||||.+++...
T Consensus       149 D~v~~~~~~~~----~~e~~rvLkpgG~l~~~~p  178 (268)
T d1p91a_         149 DAIIRIYAPCK----AEELARVVKPGGWVITATP  178 (268)
T ss_dssp             EEEEEESCCCC----HHHHHHHEEEEEEEEEEEE
T ss_pred             EEEeecCCHHH----HHHHHHHhCCCcEEEEEee
Confidence            99998765544    4678899999999998643

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=99.52  E-value=3e-14  Score=104.87  Aligned_cols=118  Identities=20%  Similarity=0.296  Sum_probs=87.7

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhC---CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch
Q 029764            5 APDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI---PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   81 (188)
Q Consensus         5 ~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~---~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   81 (188)
                      .|.-..+++.++...+|++|||||++.|+|+++++..+   ...++++++|+++........      ..++++++.+|+
T Consensus        65 ~p~d~~~~~eli~~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~------~~~~I~~i~gDs  138 (232)
T d2bm8a1          65 DPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS------DMENITLHQGDC  138 (232)
T ss_dssp             CHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG------GCTTEEEEECCS
T ss_pred             CHHHHHHHHHHHHHhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc------cccceeeeeccc
Confidence            46666778889999999999999999999999887543   347899999998876543221      135799999987


Q ss_pred             HH--HHHHHhhcccCCCceeEEEEeCCccchHHHHH-HHHhccCcCeEEEEeccc
Q 029764           82 LS--VLDQLLKYSENEGSFDYAFVDADKDNYCNYHE-RLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        82 ~~--~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~-~~~~~L~~gG~lv~~~~~  133 (188)
                      .+  .+..+     ....+|+||+|+.+.......+ .+.++|++||++|++|..
T Consensus       139 ~~~~~~~~l-----~~~~~dlIfID~~H~~~~v~~~~~~~~lLk~GG~iIveD~i  188 (232)
T d2bm8a1         139 SDLTTFEHL-----REMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDMI  188 (232)
T ss_dssp             SCSGGGGGG-----SSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEECSCH
T ss_pred             ccHHHHHHH-----HhcCCCEEEEcCCcchHHHHHHHHHhcccCcCCEEEEEcCC
Confidence            54  33332     2356899999987655433333 245899999999999875

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.51  E-value=1.7e-14  Score=108.19  Aligned_cols=104  Identities=15%  Similarity=0.169  Sum_probs=87.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .+.++|||||||+|..+..+++.+| +.+++++|+ |+.++.++++++..++.+++.+..+|..+.   +      ..+|
T Consensus        80 ~~~~~vlDvG~G~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~---~------p~~~  148 (256)
T d1qzza2          80 SAVRHVLDVGGGNGGMLAAIALRAP-HLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP---L------PVTA  148 (256)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC---C------SCCE
T ss_pred             ccCCEEEEECCCCCHHHHHHHHhhc-CcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeecccc---c------cccc
Confidence            4567999999999999999999998 899999998 889999999999999989999999987642   1      3579


Q ss_pred             eEEEEeCCc-----cchHHHHHHHHhccCcCeEEEEeccc
Q 029764           99 DYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        99 D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      |+|++...-     +....+++++.+.|||||.+++.+..
T Consensus       149 D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~  188 (256)
T d1qzza2         149 DVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA  188 (256)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             hhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEec
Confidence            999887422     23457799999999999988887654

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=99.50  E-value=1.6e-13  Score=105.28  Aligned_cols=107  Identities=16%  Similarity=0.206  Sum_probs=88.3

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc--C--CCCcEEEEEcchHHHHHHHhhcc
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--G--VDHKINFIESEALSVLDQLLKYS   92 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~--~~~~~~~~~~d~~~~~~~~~~~~   92 (188)
                      ...++++||.||.|.|..+..+++..+ ..+|++||++|+.++.+++.+...  +  -.++++++.+|+.+++...    
T Consensus        74 ~~~~pk~VLiiG~G~G~~~~~ll~~~~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~----  148 (312)
T d1uira_          74 THPEPKRVLIVGGGEGATLREVLKHPT-VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT----  148 (312)
T ss_dssp             HSSCCCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC----
T ss_pred             hCCCcceEEEeCCCchHHHHHHHhcCC-cceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhc----
Confidence            456788999999999999999887654 789999999999999999987542  1  1468999999999988763    


Q ss_pred             cCCCceeEEEEeCCcc----------chHHHHHHHHhccCcCeEEEEe
Q 029764           93 ENEGSFDYAFVDADKD----------NYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        93 ~~~~~~D~i~id~~~~----------~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                        ..+||+|++|....          ...++++.+.+.|+|||++++.
T Consensus       149 --~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~  194 (312)
T d1uira_         149 --EERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ  194 (312)
T ss_dssp             --CCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred             --CCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEe
Confidence              57899999996210          1257999999999999999985

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=6.2e-14  Score=106.11  Aligned_cols=109  Identities=11%  Similarity=0.037  Sum_probs=80.2

Q ss_pred             CEEEEEcccchHHHHHHHhhC----C-CCCEEEEEeCCchhHHHHHHHHHhcCCCCcE--EEEEcchHHHHHHHhhcccC
Q 029764           22 KKTIEIGVFTGYSLLLTALTI----P-EDGQITAIDVNRETYEIGLPIIKKAGVDHKI--NFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~----~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~~   94 (188)
                      .+|||||||+|..+..++..+    + ...+++++|+++.+++.++++++.....+++  .+...++.+........ ..
T Consensus        42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  120 (280)
T d1jqea_          42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEK-KE  120 (280)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTS-SS
T ss_pred             CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhccc-CC
Confidence            379999999999988887653    2 1357899999999999999998765433444  44566665543332211 23


Q ss_pred             CCceeEEEEeC---CccchHHHHHHHHhccCcCeEEEEec
Q 029764           95 EGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        95 ~~~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      .++||+|++..   +..+...+++++.++|+|||.+++..
T Consensus       121 ~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~  160 (280)
T d1jqea_         121 LQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIV  160 (280)
T ss_dssp             CCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEE
Confidence            57899999874   34567889999999999999888753

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.47  E-value=2.7e-14  Score=103.43  Aligned_cols=101  Identities=20%  Similarity=0.209  Sum_probs=79.2

Q ss_pred             HHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhc
Q 029764           12 MAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY   91 (188)
Q Consensus        12 l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   91 (188)
                      +..+....+..+|||||||+|..+..++       ++++||+++.+++.++++        ++.++++|+.+..  +   
T Consensus        28 ~~~~~~~~~~~~vLDiGcG~G~~~~~~~-------~~~giD~s~~~~~~a~~~--------~~~~~~~d~~~l~--~---   87 (208)
T d1vlma_          28 LQAVKCLLPEGRGVEIGVGTGRFAVPLK-------IKIGVEPSERMAEIARKR--------GVFVLKGTAENLP--L---   87 (208)
T ss_dssp             HHHHHHHCCSSCEEEETCTTSTTHHHHT-------CCEEEESCHHHHHHHHHT--------TCEEEECBTTBCC--S---
T ss_pred             HHHHHhhCCCCeEEEECCCCcccccccc-------eEEEEeCChhhccccccc--------ccccccccccccc--c---
Confidence            3445556677789999999998877663       458999999999998863        4789999986541  1   


Q ss_pred             ccCCCceeEEEEeC---CccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           92 SENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        92 ~~~~~~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                        ..++||+|++..   +.++...++.++.+.|+|||.+++.+...
T Consensus        88 --~~~~fD~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~  131 (208)
T d1vlma_          88 --KDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDR  131 (208)
T ss_dssp             --CTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             --ccccccccccccccccccccccchhhhhhcCCCCceEEEEecCC
Confidence              247999999874   33567789999999999999999977544

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.3e-13  Score=104.42  Aligned_cols=112  Identities=12%  Similarity=0.090  Sum_probs=85.8

Q ss_pred             HHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc-------CC-CCcEEEEEcchHHHH-H
Q 029764           16 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-------GV-DHKINFIESEALSVL-D   86 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-------~~-~~~~~~~~~d~~~~~-~   86 (188)
                      +...++.+|||+|||+|..+..+|...+ ..+++|||+++.+++.|+++.+..       |. ..+++++++|+.+.- .
T Consensus       147 ~~l~~~~~vlD~GcG~G~~~~~~a~~~~-~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~  225 (328)
T d1nw3a_         147 IKMTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWR  225 (328)
T ss_dssp             SCCCTTCEEEEETCTTSHHHHHHHHHCC-CSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHH
T ss_pred             cCCCCCCEEEEcCCCCCHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccccccc
Confidence            3567788999999999999999998876 678999999999999998775542       22 256999999987541 1


Q ss_pred             HHhhcccCCCceeEEEEeCC--ccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           87 QLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        87 ~~~~~~~~~~~~D~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      ..      ....|+|++...  ..+....+.++.+.|||||.+|+...+.
T Consensus       226 ~~------~~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~~~~  269 (328)
T d1nw3a_         226 ER------IANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFA  269 (328)
T ss_dssp             HH------HHHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEESSCSS
T ss_pred             cc------cCcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEecccC
Confidence            11      124688988642  3455678889999999999999876554

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=2.9e-13  Score=104.23  Aligned_cols=104  Identities=18%  Similarity=0.211  Sum_probs=83.2

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      ...++++|||||||+|..++.+|+..  ..+|+++|.++. ...++++...+++.++++++++++.+.-  +     ..+
T Consensus        30 ~~~~~~~VLDiGcG~G~ls~~aa~~G--a~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~--~-----~~~   99 (316)
T d1oria_          30 HLFKDKVVLDVGSGTGILCMFAAKAG--ARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVE--L-----PVE   99 (316)
T ss_dssp             HHHTTCEEEEETCTTSHHHHHHHHTT--CSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCC--C-----SSS
T ss_pred             ccCCcCEEEEEecCCcHHHHHHHHhC--CCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcc--c-----ccc
Confidence            35688999999999999999988863  358999999875 6778888888999999999999987641  1     247


Q ss_pred             ceeEEEEeC------CccchHHHHHHHHhccCcCeEEEEe
Q 029764           97 SFDYAFVDA------DKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        97 ~~D~i~id~------~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ++|+|+...      .......++..+.++|+|||.++-.
T Consensus       100 ~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP~  139 (316)
T d1oria_         100 KVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPD  139 (316)
T ss_dssp             CEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             eeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEee
Confidence            899998763      1234567888889999999998743

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.43  E-value=1.3e-12  Score=98.00  Aligned_cols=119  Identities=18%  Similarity=0.233  Sum_probs=91.5

Q ss_pred             CcHHHHHHHHHHHH---HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcc
Q 029764            4 TAPDAGQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   80 (188)
Q Consensus         4 ~~~~~~~~l~~l~~---~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d   80 (188)
                      -.|++..++.....   ..+..+++|+|||+|..++.++.. + +.+|+++|++++++..|++|++.+++.+++.+..++
T Consensus        91 PRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~-~-~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~  168 (271)
T d1nv8a_          91 PRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-S-DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGE  168 (271)
T ss_dssp             CCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-S-SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESS
T ss_pred             chhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhc-c-cceeeechhhhhHHHHHHHHHHHcCCCceeEEeecc
Confidence            35777777766553   345678999999999999998864 5 789999999999999999999999999889999999


Q ss_pred             hHHHHHHHhhcccCCCceeEEEEeCCc-------------c---------chHHHHHH-HHhccCcCeEEEEe
Q 029764           81 ALSVLDQLLKYSENEGSFDYAFVDADK-------------D---------NYCNYHER-LMKLLKVGGIAVYD  130 (188)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~D~i~id~~~-------------~---------~~~~~~~~-~~~~L~~gG~lv~~  130 (188)
                      ..+..+..      .++||+|+.+.+.             +         +...+++. +.++|++||++++.
T Consensus       169 ~~~~~~~~------~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~E  235 (271)
T d1nv8a_         169 FLEPFKEK------FASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME  235 (271)
T ss_dssp             TTGGGGGG------TTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred             cccccccc------cCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEE
Confidence            87754432      4789999987320             0         00123333 45789999999985

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.43  E-value=3.9e-12  Score=95.90  Aligned_cols=108  Identities=14%  Similarity=0.205  Sum_probs=86.8

Q ss_pred             HHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcC---------CCCcEEEEEcchHHHH
Q 029764           15 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG---------VDHKINFIESEALSVL   85 (188)
Q Consensus        15 l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~---------~~~~~~~~~~d~~~~~   85 (188)
                      +....++++||.||.|.|..+..+++. + ..+|++||++|+.++.+++.+...+         -.++++++.+|+..++
T Consensus        67 l~~~~~p~~vLiiG~G~G~~~~~~l~~-~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l  144 (276)
T d1mjfa_          67 MLAHPKPKRVLVIGGGDGGTVREVLQH-D-VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFI  144 (276)
T ss_dssp             HHHSSCCCEEEEEECTTSHHHHHHTTS-C-CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHH
T ss_pred             hhcCCCCceEEEecCCchHHHHHHHHh-C-CceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHH
Confidence            344567889999999999999888774 4 4689999999999999998764321         2468999999999887


Q ss_pred             HHHhhcccCCCceeEEEEeCCccc-------hHHHHHHHHhccCcCeEEEEec
Q 029764           86 DQLLKYSENEGSFDYAFVDADKDN-------YCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        86 ~~~~~~~~~~~~~D~i~id~~~~~-------~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      .+       .++||+|++|.....       ..++++.+.+.|+|||++++..
T Consensus       145 ~~-------~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~  190 (276)
T d1mjfa_         145 KN-------NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA  190 (276)
T ss_dssp             HH-------CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hc-------cCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence            64       478999999953211       2578999999999999999853

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.42  E-value=7.8e-13  Score=102.30  Aligned_cols=104  Identities=17%  Similarity=0.198  Sum_probs=83.3

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      ...++++|||||||+|..+..+|+..  ..+|+++|.++ ++..|+++....+..+++++++++..+..  +     ..+
T Consensus        35 ~~~~~~~VLDlGcGtG~ls~~aa~~G--a~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~--~-----~~~  104 (328)
T d1g6q1_          35 DLFKDKIVLDVGCGTGILSMFAAKHG--AKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVH--L-----PFP  104 (328)
T ss_dssp             HHHTTCEEEEETCTTSHHHHHHHHTC--CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSC--C-----SSS
T ss_pred             ccCCcCEEEEeCCCCCHHHHHHHHhC--CCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhcc--C-----ccc
Confidence            45688999999999999999888863  35999999986 77899999999999999999999987641  1     247


Q ss_pred             ceeEEEEeC------CccchHHHHHHHHhccCcCeEEEEe
Q 029764           97 SFDYAFVDA------DKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        97 ~~D~i~id~------~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      +||+|+...      .......++....++|||||.++-+
T Consensus       105 ~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP~  144 (328)
T d1g6q1_         105 KVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPD  144 (328)
T ss_dssp             CEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             ceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEEee
Confidence            899998752      2234556777788999999998743

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.40  E-value=2.9e-12  Score=91.06  Aligned_cols=122  Identities=13%  Similarity=0.105  Sum_probs=92.7

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCC-cEEEEEcchH
Q 029764            4 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEAL   82 (188)
Q Consensus         4 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~~~d~~   82 (188)
                      +..-...+..++.....+.++||+.||+|..++..++.-  ..+++.||.+++.++..++|++..+..+ ...++..|+.
T Consensus        27 ~~~vrealFn~l~~~~~~~~vLDlFaGsG~~glEalSRG--A~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~  104 (183)
T d2ifta1          27 GDRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQ--AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSL  104 (183)
T ss_dssp             -CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHH
T ss_pred             cHHHHHHHHHHhhhhcccceEeecccCccceeeeeeeec--ceeeEEeecccchhhhHhhHHhhhccccccccccccccc
Confidence            334445555656555678899999999999999988753  3599999999999999999999988754 5677788887


Q ss_pred             HHHHHHhhcccCCCceeEEEEeCCcc--chHHHHHHHH--hccCcCeEEEEec
Q 029764           83 SVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLM--KLLKVGGIAVYDN  131 (188)
Q Consensus        83 ~~~~~~~~~~~~~~~~D~i~id~~~~--~~~~~~~~~~--~~L~~gG~lv~~~  131 (188)
                      +.+....    ...+||+||+|.+..  .+...++.+.  .+|+++|++++.-
T Consensus       105 ~~l~~~~----~~~~fDlIFlDPPY~~~~~~~~l~~l~~~~~L~~~~liiiE~  153 (183)
T d2ifta1         105 DFLKQPQ----NQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVET  153 (183)
T ss_dssp             HHTTSCC----SSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             ccccccc----cCCcccEEEechhHhhhhHHHHHHHHHHhCCcCCCcEEEEEe
Confidence            6654321    235799999997643  3566777765  4799999999863

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.40  E-value=2.7e-12  Score=91.77  Aligned_cols=110  Identities=17%  Similarity=0.147  Sum_probs=86.8

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      ...++..+||++||+|..+..+++.++ +++++++|.++++++.|++++...+  +++.+++++..+.-..+...  ..+
T Consensus        20 ~~~~~~~~lD~t~G~Gghs~~il~~~~-~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~~~~~~~~~--~~~   94 (192)
T d1m6ya2          20 KPEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKTL--GIE   94 (192)
T ss_dssp             CCCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHHT--TCS
T ss_pred             CCCCCCEEEEecCCCcHHHHHHHhcCC-CCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhhHHHHHHHc--CCC
Confidence            456677999999999999999999987 7999999999999999999987754  67999998875542222111  247


Q ss_pred             ceeEEEEeCCccc------------hHHHHHHHHhccCcCeEEEEec
Q 029764           97 SFDYAFVDADKDN------------YCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        97 ~~D~i~id~~~~~------------~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      ++|.|++|...+.            ....++.+.++|++||.+++-+
T Consensus        95 ~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~  141 (192)
T d1m6ya2          95 KVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVIS  141 (192)
T ss_dssp             CEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred             CcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence            9999999964422            3456777789999999988754

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.39  E-value=2.4e-12  Score=101.60  Aligned_cols=112  Identities=13%  Similarity=0.198  Sum_probs=83.4

Q ss_pred             HHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcC-------CC-CcEEE-EEcchHH--H
Q 029764           16 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG-------VD-HKINF-IESEALS--V   84 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~-------~~-~~~~~-~~~d~~~--~   84 (188)
                      +.+.++.++||+|||.|..+..+|...+ ..+++|||+++.+++.|+++.+..+       .. ....+ ..++..+  .
T Consensus       212 l~Lkpgd~fLDLGCG~G~~vl~aA~~~g-~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~  290 (406)
T d1u2za_         212 CQLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNR  290 (406)
T ss_dssp             TTCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHH
T ss_pred             hCCCCCCEEEeCCCCCcHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhccc
Confidence            3567888999999999999999998876 5699999999999999998876532       11 22333 3343322  2


Q ss_pred             HHHHhhcccCCCceeEEEEeC--CccchHHHHHHHHhccCcCeEEEEecccc
Q 029764           85 LDQLLKYSENEGSFDYAFVDA--DKDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        85 ~~~~~~~~~~~~~~D~i~id~--~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      ....      ...+|+|++..  ...+....+.++.+.|||||.+|+.+.+.
T Consensus       291 ~d~~------~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~~~~~  336 (406)
T d1u2za_         291 VAEL------IPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLR  336 (406)
T ss_dssp             HHHH------GGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESSCSS
T ss_pred             cccc------cccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEecccC
Confidence            2222      35789999874  34566778899999999999999987664

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.5e-12  Score=99.90  Aligned_cols=104  Identities=17%  Similarity=0.178  Sum_probs=80.1

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      ...++++|||||||+|..++.+|+..  ..+|+++|.++.+. .+++.....+..+++.++++++.+...       ...
T Consensus        32 ~~~~~~~VLDiGcG~G~lsl~aa~~G--a~~V~aid~s~~~~-~a~~~~~~~~~~~~i~~~~~~~~~l~~-------~~~  101 (311)
T d2fyta1          32 HIFKDKVVLDVGCGTGILSMFAAKAG--AKKVLGVDQSEILY-QAMDIIRLNKLEDTITLIKGKIEEVHL-------PVE  101 (311)
T ss_dssp             GGTTTCEEEEETCTTSHHHHHHHHTT--CSEEEEEESSTHHH-HHHHHHHHTTCTTTEEEEESCTTTSCC-------SCS
T ss_pred             ccCCcCEEEEECCCCCHHHHHHHHcC--CCEEEEEeCHHHHH-HHHHHHHHhCCCccceEEEeeHHHhcC-------ccc
Confidence            34578899999999999999999863  35899999998765 566677788888899999999876411       247


Q ss_pred             ceeEEEEeCC------ccchHHHHHHHHhccCcCeEEEEe
Q 029764           97 SFDYAFVDAD------KDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        97 ~~D~i~id~~------~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      +||+|+....      ......++....++|+|||.++.+
T Consensus       102 ~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip~  141 (311)
T d2fyta1         102 KVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPD  141 (311)
T ss_dssp             CEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESC
T ss_pred             cceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEecc
Confidence            8999997631      123445666677899999998853

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.37  E-value=1.3e-12  Score=99.11  Aligned_cols=108  Identities=16%  Similarity=0.159  Sum_probs=87.9

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcC--C-CCcEEEEEcchHHHHHHHhhccc
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSE   93 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~-~~~~~~~~~d~~~~~~~~~~~~~   93 (188)
                      ...+|++||-||.|.|..+..++++.+ ..+|++||++|+.++.+++.+....  + .++++++.+|+..++.+.     
T Consensus        86 ~~~~pk~VLiiGgG~G~~~r~~l~~~~-~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~-----  159 (295)
T d1inla_          86 LHPNPKKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF-----  159 (295)
T ss_dssp             HSSSCCEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC-----
T ss_pred             hCCCCceEEEecCCchHHHHHHHhcCC-CceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcC-----
Confidence            346788999999999999999988654 6799999999999999999875432  1 368999999999887653     


Q ss_pred             CCCceeEEEEeCCcc--------chHHHHHHHHhccCcCeEEEEec
Q 029764           94 NEGSFDYAFVDADKD--------NYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        94 ~~~~~D~i~id~~~~--------~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                       .++||+|++|...+        ...++++.+.+.|+|||++++..
T Consensus       160 -~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~  204 (295)
T d1inla_         160 -KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET  204 (295)
T ss_dssp             -SSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             -CCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence             57899999995211        13689999999999999999863

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.36  E-value=1.9e-12  Score=97.46  Aligned_cols=109  Identities=17%  Similarity=0.206  Sum_probs=89.3

Q ss_pred             HHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc-C--CCCcEEEEEcchHHHHHHHhhcc
Q 029764           16 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-G--VDHKINFIESEALSVLDQLLKYS   92 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~--~~~~~~~~~~d~~~~~~~~~~~~   92 (188)
                      ....++++||-||.|.|..+..+++..+ ..+|+++|++|+.++.+++.+... +  -.++++++.+|+..++...    
T Consensus        71 ~~~~~p~~vLiiGgG~G~~~~~~l~~~~-~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~----  145 (274)
T d1iy9a_          71 FTHPNPEHVLVVGGGDGGVIREILKHPS-VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS----  145 (274)
T ss_dssp             HHSSSCCEEEEESCTTCHHHHHHTTCTT-CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC----
T ss_pred             hccCCcceEEecCCCCcHHHHHHHhcCC-cceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhc----
Confidence            3456778999999999999999988654 679999999999999999987542 1  1368999999999887653    


Q ss_pred             cCCCceeEEEEeCCcc-------chHHHHHHHHhccCcCeEEEEec
Q 029764           93 ENEGSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        93 ~~~~~~D~i~id~~~~-------~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                        ..+||+|++|...+       ...++++.+.+.|+|+|+++...
T Consensus       146 --~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~  189 (274)
T d1iy9a_         146 --ENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (274)
T ss_dssp             --CSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             --CCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence              57899999995321       24689999999999999999863

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.36  E-value=5.3e-12  Score=95.69  Aligned_cols=108  Identities=20%  Similarity=0.320  Sum_probs=88.2

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcC---CCCcEEEEEcchHHHHHHHhhcccC
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG---VDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      ..++++||-||.|.|..+..+++..+ ..+++++|++++.++.+++.+....   -.++++++.+|+.+.+.+.     .
T Consensus        78 ~~~pk~VLiiGgG~G~~~r~~l~~~~-~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~-----~  151 (290)
T d1xj5a_          78 IPNPKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNA-----A  151 (290)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTS-----C
T ss_pred             CCCCcceEEecCCchHHHHHHHhccc-ceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhc-----c
Confidence            45778999999999999999988654 6799999999999999999874321   2478999999999988653     1


Q ss_pred             CCceeEEEEeCCcc-------chHHHHHHHHhccCcCeEEEEec
Q 029764           95 EGSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        95 ~~~~D~i~id~~~~-------~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      .++||+|++|....       ...++++.+.+.|+|||++++.-
T Consensus       152 ~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  195 (290)
T d1xj5a_         152 EGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  195 (290)
T ss_dssp             TTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence            35899999996321       13678999999999999999864

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.33  E-value=3.4e-12  Score=97.31  Aligned_cols=116  Identities=16%  Similarity=0.214  Sum_probs=89.8

Q ss_pred             HHHHHH--HHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCC---CCcEEEEEcchHH
Q 029764            9 GQLMAM--LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV---DHKINFIESEALS   83 (188)
Q Consensus         9 ~~~l~~--l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~---~~~~~~~~~d~~~   83 (188)
                      .++|..  +.....+++||-||.|.|..+..++++.+ ..+|+++|++++.++.+++.+....-   .++++++.+|+..
T Consensus        93 hE~l~h~pl~~~~~pk~VLIiGgG~G~~~rellk~~~-v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~  171 (312)
T d2b2ca1          93 QEMLAHLPMFAHPDPKRVLIIGGGDGGILREVLKHES-VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFE  171 (312)
T ss_dssp             HHHHHHHHHHHSSSCCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHH
T ss_pred             HHHhhhHHHhcCCCCCeEEEeCCCchHHHHHHHHcCC-cceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHH
Confidence            344443  33456788999999999999999988644 67999999999999999998754221   3689999999999


Q ss_pred             HHHHHhhcccCCCceeEEEEeCCcc-------chHHHHHHHHhccCcCeEEEEec
Q 029764           84 VLDQLLKYSENEGSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        84 ~~~~~~~~~~~~~~~D~i~id~~~~-------~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      ++...      ..+||+|++|....       ...++++.+.+.|+|||+++...
T Consensus       172 ~l~~~------~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~  220 (312)
T d2b2ca1         172 FLKNH------KNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  220 (312)
T ss_dssp             HHHHC------TTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             HHHhC------CCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence            88653      57899999995321       13578999999999999999863

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.7e-12  Score=97.10  Aligned_cols=108  Identities=14%  Similarity=0.182  Sum_probs=87.3

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc---CCCCcEEEEEcchHHHHHHHhhccc
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA---GVDHKINFIESEALSVLDQLLKYSE   93 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~---~~~~~~~~~~~d~~~~~~~~~~~~~   93 (188)
                      ....|++||-||.|.|..+..+++..+ ..+++.+|++|+.++.+++.+...   --.++++++.+|+..++...     
T Consensus        75 ~~~~pk~vLiiGgG~G~~~~~~l~~~~-~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~-----  148 (285)
T d2o07a1          75 SHPNPRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN-----  148 (285)
T ss_dssp             TSSSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC-----
T ss_pred             hCcCcCeEEEeCCCchHHHHHHHHcCC-cceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcC-----
Confidence            456788999999999999999987654 679999999999999999987532   11478999999999988653     


Q ss_pred             CCCceeEEEEeCCcc-------chHHHHHHHHhccCcCeEEEEec
Q 029764           94 NEGSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        94 ~~~~~D~i~id~~~~-------~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                       ..+||+|++|....       ...++++.+.+.|++||++++..
T Consensus       149 -~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  192 (285)
T d2o07a1         149 -QDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  192 (285)
T ss_dssp             -SSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             -CCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence             57899999995321       12468999999999999999863

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.32  E-value=9.1e-12  Score=89.73  Aligned_cols=90  Identities=13%  Similarity=0.174  Sum_probs=72.5

Q ss_pred             CCcHHHHHHHHHHHHH---cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc
Q 029764            3 GTAPDAGQLMAMLLRL---VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   79 (188)
Q Consensus         3 ~~~~~~~~~l~~l~~~---~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~   79 (188)
                      .|++..+..+.+++..   ..+++|||+|||+|..++.++.. . ..+|+++|+++++++.+++|++..+.  +.+++.+
T Consensus        26 ~Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~-g-~~~v~~vdi~~~~~~~a~~N~~~~~~--~~~~~~~  101 (201)
T d1wy7a1          26 RTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLL-G-AKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIG  101 (201)
T ss_dssp             CCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEES
T ss_pred             CCCHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHc-C-CCEEEEEcCcHHHHHHHHHHHHHcCC--CceEEEC
Confidence            5777777766666554   36689999999999999887764 2 35999999999999999999988774  5788999


Q ss_pred             chHHHHHHHhhcccCCCceeEEEEeCC
Q 029764           80 EALSVLDQLLKYSENEGSFDYAFVDAD  106 (188)
Q Consensus        80 d~~~~~~~~~~~~~~~~~~D~i~id~~  106 (188)
                      |+.+.          ..+||+|++|.+
T Consensus       102 d~~~~----------~~~fD~Vi~nPP  118 (201)
T d1wy7a1         102 DVSEF----------NSRVDIVIMNPP  118 (201)
T ss_dssp             CGGGC----------CCCCSEEEECCC
T ss_pred             chhhh----------CCcCcEEEEcCc
Confidence            98543          478999999964

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=6.9e-12  Score=93.30  Aligned_cols=83  Identities=17%  Similarity=0.276  Sum_probs=67.3

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH-HHHhhcccCCCce
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL-DQLLKYSENEGSF   98 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~~   98 (188)
                      +..++||+|||+|..++.++...+ +.+++++|+++++++.|++|++.+++.+++.+.+.+..+.+ ..+..  ...++|
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~-~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~--~~~~~f  137 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKE--ESEIIY  137 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTT--CCSCCB
T ss_pred             ccceEEEeCCCchHHHHHHHHhCC-CccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhh--cccCce
Confidence            345899999999999999999887 89999999999999999999999999999999887654321 11111  124679


Q ss_pred             eEEEEeC
Q 029764           99 DYAFVDA  105 (188)
Q Consensus        99 D~i~id~  105 (188)
                      |+|++..
T Consensus       138 D~ivsNP  144 (250)
T d2h00a1         138 DFCMCNP  144 (250)
T ss_dssp             SEEEECC
T ss_pred             eEEEecC
Confidence            9999874

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.29  E-value=9.7e-12  Score=89.02  Aligned_cols=87  Identities=15%  Similarity=0.201  Sum_probs=69.3

Q ss_pred             CCCcHHHHHHHHHHHHHc---CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE
Q 029764            2 MGTAPDAGQLMAMLLRLV---NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE   78 (188)
Q Consensus         2 ~~~~~~~~~~l~~l~~~~---~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~   78 (188)
                      ++|+++.+..+.+.+...   .+++|||+|||+|..++.++..-  ..+|+++|+++.+++.|++|+      .++++++
T Consensus        27 y~T~~~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~g--a~~V~~vDid~~a~~~ar~N~------~~~~~~~   98 (197)
T d1ne2a_          27 YPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLG--AESVTAFDIDPDAIETAKRNC------GGVNFMV   98 (197)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTT--BSEEEEEESCHHHHHHHHHHC------TTSEEEE
T ss_pred             CCCCHHHHHHHHHHHHHcCCCCCCEEEEeCCCCcHHHHHHHHcC--CCcccccccCHHHHHHHHHcc------ccccEEE
Confidence            467777777776655544   67899999999999988877642  358999999999999999985      3578999


Q ss_pred             cchHHHHHHHhhcccCCCceeEEEEeCC
Q 029764           79 SEALSVLDQLLKYSENEGSFDYAFVDAD  106 (188)
Q Consensus        79 ~d~~~~~~~~~~~~~~~~~~D~i~id~~  106 (188)
                      +|..+.          .++||+|+++.+
T Consensus        99 ~D~~~l----------~~~fD~Vi~NPP  116 (197)
T d1ne2a_          99 ADVSEI----------SGKYDTWIMNPP  116 (197)
T ss_dssp             CCGGGC----------CCCEEEEEECCC
T ss_pred             Eehhhc----------CCcceEEEeCcc
Confidence            998543          478999999864

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.5e-12  Score=96.80  Aligned_cols=115  Identities=21%  Similarity=0.036  Sum_probs=75.1

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE-------cch--HH-HHHHHh
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-------SEA--LS-VLDQLL   89 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~-------~d~--~~-~~~~~~   89 (188)
                      ++.+|||+|||+|..+..++...  ..+|+++|+++.+++.|++++...+.........       +..  .. ......
T Consensus        51 ~g~~vLDlGcG~G~~~~~~~~~~--~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (257)
T d2a14a1          51 QGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  128 (257)
T ss_dssp             CEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHhHHHHhccc--cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence            45689999999998887776542  3479999999999999999987655321100000       000  00 000000


Q ss_pred             ----------------hcccCCCceeEEEEeCC-------ccchHHHHHHHHhccCcCeEEEEeccccCc
Q 029764           90 ----------------KYSENEGSFDYAFVDAD-------KDNYCNYHERLMKLLKVGGIAVYDNTLWGG  136 (188)
Q Consensus        90 ----------------~~~~~~~~~D~i~id~~-------~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  136 (188)
                                      ......++||+|+....       ...+..+++++.++|||||.+++.+.....
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~  198 (257)
T d2a14a1         129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLP  198 (257)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC
T ss_pred             hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccc
Confidence                            00013568999987632       134567889999999999999998766543

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.22  E-value=7.6e-10  Score=83.53  Aligned_cols=120  Identities=18%  Similarity=0.176  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764            7 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   86 (188)
Q Consensus         7 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   86 (188)
                      ....+...++...++.+|||++++.|.=+..++.... +++|+++|.++..++..++++++.|..+ +.....+......
T Consensus        89 ~sS~l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~-~~~i~a~d~~~~R~~~l~~~~~r~g~~~-~~~~~~~~~~~~~  166 (284)
T d1sqga2          89 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKRLGMKA-TVKQGDGRYPSQW  166 (284)
T ss_dssp             HHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESSTTTHHHHHHHHHHTTCCC-EEEECCTTCTHHH
T ss_pred             ccccccccccCccccceeEeccCccccchhhhhhhhh-hhhhhhhhcchhhhhhHhhhhhcccccc-eeeeccccccchh
Confidence            3445556666778888999999999999999998766 6899999999999999999999999764 4444444322211


Q ss_pred             HHhhcccCCCceeEEEEeCCccc-------------------------hHHHHHHHHhccCcCeEEEEecccc
Q 029764           87 QLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        87 ~~~~~~~~~~~~D~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      .      ..+.||.|++|++.+.                         ...+++.+.++|++||.||......
T Consensus       167 ~------~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~  233 (284)
T d1sqga2         167 C------GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV  233 (284)
T ss_dssp             H------TTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred             c------ccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecC
Confidence            1      1468999999953211                         1356777889999999999876664

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.5e-11  Score=92.10  Aligned_cols=113  Identities=16%  Similarity=0.044  Sum_probs=72.6

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCc--------------------------
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK--------------------------   73 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~--------------------------   73 (188)
                      ++.++||+|||+|..++..+...  ..+|+++|+++.+++.+++++.+.+..-.                          
T Consensus        54 ~g~~vLDiGcG~g~~~~~~~~~~--~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T d2g72a1          54 SGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR  131 (263)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred             CCcEEEEeccCCCHHHHHHhccc--CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence            56799999999997765544432  34899999999999999998765432110                          


Q ss_pred             ---EEEEEcchHHHHHHHhhcccCCCceeEEEEeC-------CccchHHHHHHHHhccCcCeEEEEeccccC
Q 029764           74 ---INFIESEALSVLDQLLKYSENEGSFDYAFVDA-------DKDNYCNYHERLMKLLKVGGIAVYDNTLWG  135 (188)
Q Consensus        74 ---~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~-------~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  135 (188)
                         ......|.....+ +.......++||+|++..       +...+...++++.++|||||.+++.+....
T Consensus       132 ~~~~~~~~~Dv~~~~~-~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~  202 (263)
T d2g72a1         132 ARVKRVLPIDVHQPQP-LGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEE  202 (263)
T ss_dssp             HHEEEEECCCTTSSST-TCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESC
T ss_pred             hhhhccccccccCCCc-cccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCC
Confidence               0111112111000 000001235799998753       123567889999999999999999776643

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=1.8e-10  Score=89.62  Aligned_cols=121  Identities=13%  Similarity=0.157  Sum_probs=89.8

Q ss_pred             CCCcHHHHHHHHHH-H---HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEE
Q 029764            2 MGTAPDAGQLMAML-L---RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI   77 (188)
Q Consensus         2 ~~~~~~~~~~l~~l-~---~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~   77 (188)
                      .+..+...+.|... .   ...+..+|||+.||+|..++.+|+.   ..+|+++|.++++++.|++|.+.+++. +++++
T Consensus       190 fQ~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~---~~~V~gvE~~~~ai~~A~~na~~n~i~-n~~~~  265 (358)
T d1uwva2         190 IQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGLQ-NVTFY  265 (358)
T ss_dssp             CCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEE
T ss_pred             hccchhhhhHHHHHHHHhhccCCCceEEEecccccccchhcccc---ccEEEeccCcHHHHHHHHHhHHhcccc-cceee
Confidence            45555555555443 2   2335679999999999999999986   459999999999999999999999876 69999


Q ss_pred             EcchHHHHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           78 ESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        78 ~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      .++..+.+.....   ...++|+|++|.+.....+.++.+.+. ++.-++.++
T Consensus       266 ~~~~~~~~~~~~~---~~~~~d~vilDPPR~G~~~~~~~l~~~-~~~~ivYVS  314 (358)
T d1uwva2         266 HENLEEDVTKQPW---AKNGFDKVLLDPARAGAAGVMQQIIKL-EPIRIVYVS  314 (358)
T ss_dssp             ECCTTSCCSSSGG---GTTCCSEEEECCCTTCCHHHHHHHHHH-CCSEEEEEE
T ss_pred             ecchhhhhhhhhh---hhccCceEEeCCCCccHHHHHHHHHHc-CCCEEEEEe
Confidence            9998765433221   246799999998766656666776553 566555553

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=1.3e-10  Score=83.67  Aligned_cols=102  Identities=14%  Similarity=0.136  Sum_probs=87.3

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      ...++.+++|+|||.|..++.+|-..| +.+++.+|.+...+...++....+++. +++++++.+.+..        ...
T Consensus        62 ~~~~~~~ilDiGsGaG~PGi~laI~~p-~~~~~Lves~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~~~--------~~~  131 (207)
T d1jsxa_          62 PYLQGERFIDVGTGPGLPGIPLSIVRP-EAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFP--------SEP  131 (207)
T ss_dssp             GGCCSSEEEEETCTTTTTHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSC--------CCS
T ss_pred             hhhcCCceeeeeccCCceeeehhhhcc-cceEEEEecchHHHHHHHHHHHHcCCc-ceeeeccchhhhc--------ccc
Confidence            355678999999999999999998887 899999999999999999999999986 5999999886542        136


Q ss_pred             ceeEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764           97 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        97 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      +||+|..-+ ......+++.+.++++++|.+++
T Consensus       132 ~fD~V~sRA-~~~~~~ll~~~~~~l~~~g~~~~  163 (207)
T d1jsxa_         132 PFDGVISRA-FASLNDMVSWCHHLPGEQGRFYA  163 (207)
T ss_dssp             CEEEEECSC-SSSHHHHHHHHTTSEEEEEEEEE
T ss_pred             ccceehhhh-hcCHHHHHHHHHHhcCCCcEEEE
Confidence            899998765 34667889999999999999887

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.05  E-value=1.6e-09  Score=84.50  Aligned_cols=110  Identities=18%  Similarity=0.192  Sum_probs=90.4

Q ss_pred             HHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCC--------------cEEEEEcc
Q 029764           15 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH--------------KINFIESE   80 (188)
Q Consensus        15 l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~--------------~~~~~~~d   80 (188)
                      +++..++.+|||..||+|.-++..|...+ ..+|++.|+++++++.+++|++.++..+              .+.+.+.|
T Consensus        40 ~~~~~~~~~vLD~~sasG~rsiRya~E~~-~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~D  118 (375)
T d2dula1          40 LLNILNPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDD  118 (375)
T ss_dssp             HHHHHCCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESC
T ss_pred             HHHHhCCCEEEEcCCCccHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhh
Confidence            34556889999999999999998888765 6799999999999999999998887542              46777888


Q ss_pred             hHHHHHHHhhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764           81 ALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      +...+...      ...||+|.+|. .....++++.+.+.++.||+|.+..+
T Consensus       119 a~~~~~~~------~~~fDvIDiDP-fGs~~pfldsAi~a~~~~Gll~vTaT  163 (375)
T d2dula1         119 ANRLMAER------HRYFHFIDLDP-FGSPMEFLDTALRSAKRRGILGVTAT  163 (375)
T ss_dssp             HHHHHHHS------TTCEEEEEECC-SSCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hhhhhHhh------cCcCCcccCCC-CCCcHHHHHHHHHHhccCCEEEEEec
Confidence            87665442      46899999996 44557899999999999999998543

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.00  E-value=2.6e-09  Score=81.55  Aligned_cols=120  Identities=22%  Similarity=0.266  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029764            7 DAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   86 (188)
Q Consensus         7 ~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   86 (188)
                      ....+...++...++.+|||+++|.|.=+..++......+.+++.|.++..++..++++++.+.. ++.+...|.... +
T Consensus       103 ~aS~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~-~i~~~~~d~~~~-~  180 (313)
T d1ixka_         103 ASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHI-G  180 (313)
T ss_dssp             HHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGG-G
T ss_pred             ccccchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhh-cccccccccccc-c
Confidence            34455566667778889999999999999999988876789999999999999999999999986 477777777554 2


Q ss_pred             HHhhcccCCCceeEEEEeCCccc-------------------------hHHHHHHHHhccCcCeEEEEecccc
Q 029764           87 QLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus        87 ~~~~~~~~~~~~D~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      ..      ...||.|++|++.+.                         ..+++..++++|||||.||......
T Consensus       181 ~~------~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl  247 (313)
T d1ixka_         181 EL------NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL  247 (313)
T ss_dssp             GG------CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             cc------cccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccC
Confidence            22      578999999953211                         1346777789999999988866554

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=4.4e-09  Score=79.56  Aligned_cols=92  Identities=22%  Similarity=0.242  Sum_probs=73.5

Q ss_pred             HHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029764           10 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   89 (188)
Q Consensus        10 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   89 (188)
                      .+...++...++.+|||+++|.|+-+..+|..+...++|+++|+++..++..+++++++|+. ++.+...|.....+...
T Consensus        84 ~l~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~-~~~~~~~d~~~~~~~~~  162 (293)
T d2b9ea1          84 CLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAVSPSDP  162 (293)
T ss_dssp             GHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGSCTTCG
T ss_pred             cccccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCcc-ceeeeehhhhhhccccc
Confidence            34445556677889999999999999999987766789999999999999999999999976 58888888865422211


Q ss_pred             hcccCCCceeEEEEeCC
Q 029764           90 KYSENEGSFDYAFVDAD  106 (188)
Q Consensus        90 ~~~~~~~~~D~i~id~~  106 (188)
                          ..+.||.|++|++
T Consensus       163 ----~~~~fD~VL~DaP  175 (293)
T d2b9ea1         163 ----RYHEVHYILLDPS  175 (293)
T ss_dssp             ----GGTTEEEEEECCC
T ss_pred             ----ccceeeEEeecCc
Confidence                1368999999953

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.97  E-value=2.6e-09  Score=78.22  Aligned_cols=103  Identities=16%  Similarity=0.204  Sum_probs=86.2

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   99 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   99 (188)
                      ...+++|||||.|.-++.+|-..| +.+++.+|.+.......++..+..++. ++.++++.+.+.....    ...++||
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p-~~~v~Lves~~KK~~FL~~v~~~L~L~-n~~i~~~R~E~~~~~~----~~~~~~D  143 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFP-HLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRK----DVRESYD  143 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCT----TTTTCEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhCC-CccceeecchHHHHHHHHHHHHHhCCC-CcEEEeehhhhccccc----cccccce
Confidence            467999999999999999998887 899999999999999999999999986 5888898886542211    1146899


Q ss_pred             EEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764          100 YAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus       100 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      +|..-+. .....+++.+.+++++||.+++
T Consensus       144 ~v~sRAv-a~l~~ll~~~~~~l~~~g~~i~  172 (239)
T d1xdza_         144 IVTARAV-ARLSVLSELCLPLVKKNGLFVA  172 (239)
T ss_dssp             EEEEECC-SCHHHHHHHHGGGEEEEEEEEE
T ss_pred             EEEEhhh-hCHHHHHHHHhhhcccCCEEEE
Confidence            9999864 4667889999999999999887

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.94  E-value=1.1e-08  Score=75.26  Aligned_cols=98  Identities=13%  Similarity=0.105  Sum_probs=76.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .+..+|||||||+|..+..+++..| +.+++..|. |+.+       +..+..++++++.+|..+.          ....
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi-------~~~~~~~ri~~~~gd~~~~----------~p~~  140 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKYP-LIKGINFDL-PQVI-------ENAPPLSGIEHVGGDMFAS----------VPQG  140 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHH-------TTCCCCTTEEEEECCTTTC----------CCCE
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCC-CCeEEEecc-hhhh-------hccCCCCCeEEecCCcccc----------cccc
Confidence            3457999999999999999999998 899999998 4443       3444557899999997542          2466


Q ss_pred             eEEEEeCC-----ccchHHHHHHHHhccCcCeEEEEeccccC
Q 029764           99 DYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLWG  135 (188)
Q Consensus        99 D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  135 (188)
                      |++++...     .+....+++++.+.|+|||.+++.+...+
T Consensus       141 D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~  182 (244)
T d1fp1d2         141 DAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILP  182 (244)
T ss_dssp             EEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred             eEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEec
Confidence            99987642     23356789999999999999999887653

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.93  E-value=1.6e-09  Score=78.41  Aligned_cols=109  Identities=17%  Similarity=0.221  Sum_probs=83.7

Q ss_pred             CCcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchH
Q 029764            3 GTAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   82 (188)
Q Consensus         3 ~~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   82 (188)
                      -|++..+++|..++...++.+|||.|||+|.....+.+..+....++++|+++..+.          +..+..++++|..
T Consensus         2 ~TP~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~----------~~~~~~~~~~~~~   71 (223)
T d2ih2a1           2 ETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD----------LPPWAEGILADFL   71 (223)
T ss_dssp             CCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCC----------CCTTEEEEESCGG
T ss_pred             CCCHHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHh----------hcccceeeeeehh
Confidence            478899999999998888999999999999998888777665688999999987643          2334677888875


Q ss_pred             HHHHHHhhcccCCCceeEEEEeCCcc--------------------------------chHHHHHHHHhccCcCeEEEE
Q 029764           83 SVLDQLLKYSENEGSFDYAFVDADKD--------------------------------NYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        83 ~~~~~~~~~~~~~~~~D~i~id~~~~--------------------------------~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      ...        ....||+|+.+.+..                                .+..++..+.++|++||.+++
T Consensus        72 ~~~--------~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~  142 (223)
T d2ih2a1          72 LWE--------PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVF  142 (223)
T ss_dssp             GCC--------CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccc--------cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEE
Confidence            431        247899999874210                                123567888899999998655

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.86  E-value=4e-09  Score=80.93  Aligned_cols=116  Identities=18%  Similarity=0.181  Sum_probs=83.9

Q ss_pred             CcHHHHHHHHHHHH----HcCCCEEEEEcccchHHHHHHHhhCC----CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEE
Q 029764            4 TAPDAGQLMAMLLR----LVNAKKTIEIGVFTGYSLLLTALTIP----EDGQITAIDVNRETYEIGLPIIKKAGVDHKIN   75 (188)
Q Consensus         4 ~~~~~~~~l~~l~~----~~~~~~vLeiG~g~G~~~~~la~~~~----~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~   75 (188)
                      |++...++|..++.    ..++.+|+|.+||+|.....+...+.    ...+++++|+++.++..|+.+....+.  ...
T Consensus        97 TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~--~~~  174 (328)
T d2f8la1          97 TPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMT  174 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCE
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh--hhh
Confidence            46666777765543    34556899999999999888765432    245899999999999999998877664  456


Q ss_pred             EEEcchHHHHHHHhhcccCCCceeEEEEeCCcc---------------------chHHHHHHHHhccCcCeEEEE
Q 029764           76 FIESEALSVLDQLLKYSENEGSFDYAFVDADKD---------------------NYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        76 ~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~---------------------~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      +.++|.....        ...+||+|+.+.+..                     ....++..+.++|++||.+++
T Consensus       175 ~~~~d~~~~~--------~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~  241 (328)
T d2f8la1         175 LLHQDGLANL--------LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFF  241 (328)
T ss_dssp             EEESCTTSCC--------CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEE
T ss_pred             hhcccccccc--------ccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEE
Confidence            7777765321        246899999985421                     123478899999999996544

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.81  E-value=1.4e-08  Score=74.29  Aligned_cols=91  Identities=13%  Similarity=0.139  Sum_probs=66.4

Q ss_pred             HHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           15 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        15 l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      .+...++.+|||||||+|..|..++..   +.++++||+|+..++.+++++...   ++++++++|+.+.  .+.     
T Consensus        16 ~~~~~~~d~VlEIGpG~G~LT~~Ll~~---~~~v~avE~D~~l~~~l~~~~~~~---~n~~i~~~D~l~~--~~~-----   82 (235)
T d1qama_          16 NIRLNEHDNIFEIGSGKGHFTLELVQR---CNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQF--KFP-----   82 (235)
T ss_dssp             TCCCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGC--CCC-----
T ss_pred             hcCCCCCCeEEEECCCchHHHHHHHhC---cCceEEEeeccchHHHHHHHhhcc---cchhhhhhhhhhc--ccc-----
Confidence            344567889999999999999999986   459999999999999999876432   4799999999875  111     


Q ss_pred             CCceeEEEEeCCccchHHHHHHHH
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLM  118 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~  118 (188)
                      ......|+...+..-..+.+..+.
T Consensus        83 ~~~~~~vv~NLPYnIss~il~~ll  106 (235)
T d1qama_          83 KNQSYKIFGNIPYNISTDIIRKIV  106 (235)
T ss_dssp             SSCCCEEEEECCGGGHHHHHHHHH
T ss_pred             ccccceeeeeehhhhhHHHHHHHH
Confidence            122334556655544455555554

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=3.6e-08  Score=73.68  Aligned_cols=102  Identities=13%  Similarity=0.078  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029764            6 PDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   85 (188)
Q Consensus         6 ~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   85 (188)
                      +...+-+...+...+..+|||||+|.|..|..+++.   +.++++||+|+.++...++.+.......+++++.+|+.+. 
T Consensus         7 ~~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~---~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~-   82 (278)
T d1zq9a1           7 PLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT-   82 (278)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS-
T ss_pred             HHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhc---CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhh-
Confidence            334444444445567789999999999999999987   4599999999999999999987766567899999999764 


Q ss_pred             HHHhhcccCCCceeEEEEeCCccchHHHHHHHHh
Q 029764           86 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK  119 (188)
Q Consensus        86 ~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~  119 (188)
                              +...++.|+...+..-..+++..+..
T Consensus        83 --------~~~~~~~vV~NLPY~Iss~il~~~~~  108 (278)
T d1zq9a1          83 --------DLPFFDTCVANLPYQISSPFVFKLLL  108 (278)
T ss_dssp             --------CCCCCSEEEEECCGGGHHHHHHHHHH
T ss_pred             --------hhhhhhhhhcchHHHHHHHHHHHHHh
Confidence                    12456677777665555566655543

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.78  E-value=8.7e-08  Score=70.43  Aligned_cols=97  Identities=8%  Similarity=0.127  Sum_probs=74.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      ....+|+|||+|+|..+..+++.+| +.+++..|. |+.+       +..+..++++++.+|..+.          ...+
T Consensus        79 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi-------~~~~~~~rv~~~~gD~f~~----------~p~a  139 (244)
T d1fp2a2          79 DGLESIVDVGGGTGTTAKIICETFP-KLKCIVFDR-PQVV-------ENLSGSNNLTYVGGDMFTS----------IPNA  139 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHH-------TTCCCBTTEEEEECCTTTC----------CCCC
T ss_pred             cCceEEEEecCCccHHHHHHHHhCC-CCeEEEecC-HHHH-------HhCcccCceEEEecCcccC----------CCCC
Confidence            3457899999999999999999998 889999998 5443       3445567999999998642          2568


Q ss_pred             eEEEEeC-----CccchHHHHHHHHhccCcC---eEEEEecccc
Q 029764           99 DYAFVDA-----DKDNYCNYHERLMKLLKVG---GIAVYDNTLW  134 (188)
Q Consensus        99 D~i~id~-----~~~~~~~~~~~~~~~L~~g---G~lv~~~~~~  134 (188)
                      |++++..     +.+....+++++.+.|+||   |.+++.+...
T Consensus       140 D~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~  183 (244)
T d1fp2a2         140 DAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVI  183 (244)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEE
T ss_pred             cEEEEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeec
Confidence            9998763     2233457899999999998   6677766554

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.78  E-value=6e-08  Score=68.12  Aligned_cols=105  Identities=10%  Similarity=0.052  Sum_probs=79.2

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   96 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   96 (188)
                      ...++..++|..+|.|+.+..++..   +++|+++|.+|++++.+++.     ..+++.+++++..++...+...  ..+
T Consensus        15 ~~~~g~~~vD~T~G~GGhs~~iL~~---~~~viaiD~D~~ai~~a~~~-----~~~~~~~~~~~f~~~~~~l~~~--~~~   84 (182)
T d1wg8a2          15 AVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKGL-----HLPGLTVVQGNFRHLKRHLAAL--GVE   84 (182)
T ss_dssp             TCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHT-----CCTTEEEEESCGGGHHHHHHHT--TCS
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHhcc---cCcEEEEhhhhhHHHHHhhc-----cccceeEeehHHHHHHHHHHHc--CCC
Confidence            4567789999999999999888874   67999999999999988764     2457999998766543332221  246


Q ss_pred             ceeEEEEeCCccc------------hHHHHHHHHhccCcCeEEEEec
Q 029764           97 SFDYAFVDADKDN------------YCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        97 ~~D~i~id~~~~~------------~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      .+|.|++|.....            ....++.....|++||.+++-.
T Consensus        85 ~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~  131 (182)
T d1wg8a2          85 RVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIA  131 (182)
T ss_dssp             CEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEe
Confidence            8999999964422            2335677788999999988754

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.71  E-value=1.2e-08  Score=72.63  Aligned_cols=109  Identities=21%  Similarity=0.202  Sum_probs=67.8

Q ss_pred             HHHcCCCEEEEEcccchHHHHHHHhhC----C---CCCEEEEEeCCchhHHHHHHHH------------------HhcCC
Q 029764           16 LRLVNAKKTIEIGVFTGYSLLLTALTI----P---EDGQITAIDVNRETYEIGLPII------------------KKAGV   70 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g~G~~~~~la~~~----~---~~~~v~~iD~~~~~~~~a~~~~------------------~~~~~   70 (188)
                      ....++.+|+.+||++|.-+..+|..+    .   ...+|+++|+++..++.|++..                  ...+-
T Consensus        20 ~~~~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~   99 (193)
T d1af7a2          20 RRRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTG   99 (193)
T ss_dssp             HHSCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCT
T ss_pred             hccCCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCC
Confidence            344556699999999998654444221    1   1357999999999999997421                  11110


Q ss_pred             C------------CcEEEEEcchHHHHHHHhhcccCCCceeEEEEeC-----CccchHHHHHHHHhccCcCeEEEEe
Q 029764           71 D------------HKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        71 ~------------~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      .            ..+.+...+..+..+      ...++||+|++-.     +.+.....++.+.+.|+|||+|++-
T Consensus       100 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~------~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         100 PHEGLVRVRQELANYVEFSSVNLLEKQY------NVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             TSCSEEEECHHHHTTEEEEECCTTCSSC------CCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             CccceeehHHHHHHHHHHhhhhcccccc------CCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence            0            011222222211100      1246899999874     3344567899999999999999984

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.67  E-value=4e-08  Score=72.23  Aligned_cols=95  Identities=13%  Similarity=0.162  Sum_probs=71.7

Q ss_pred             CCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029764           21 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  100 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~  100 (188)
                      ..+|+|||||+|..+..+++.+| +.+++..|.. +.++       .....+++++..+|..+.+          +..|.
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dlp-~vi~-------~~~~~~r~~~~~~d~~~~~----------P~ad~  142 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYP-TIKGINFDLP-HVIE-------DAPSYPGVEHVGGDMFVSI----------PKADA  142 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCT-TSEEEEEECT-TTTT-------TCCCCTTEEEEECCTTTCC----------CCCSC
T ss_pred             CcEEEEecCCCcHHHHHHHHHCC-CCeEEEcccH-Hhhh-------hcccCCceEEecccccccC----------CCcce
Confidence            46899999999999999999998 8999999984 4432       2334568999999976421          33455


Q ss_pred             EEEeC-----CccchHHHHHHHHhccCcCeEEEEecccc
Q 029764          101 AFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTLW  134 (188)
Q Consensus       101 i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  134 (188)
                      +++..     +.+....+++++.+.|+|||.+++.+...
T Consensus       143 ~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~  181 (243)
T d1kyza2         143 VFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECIL  181 (243)
T ss_dssp             EECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEE
T ss_pred             EEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEe
Confidence            55432     23345678999999999999888877664

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.55  E-value=1.2e-07  Score=69.97  Aligned_cols=102  Identities=13%  Similarity=0.033  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH-HH
Q 029764            8 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-LD   86 (188)
Q Consensus         8 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~   86 (188)
                      ..+-+...+...++..|||||||.|..|..+++.   ..++++||+|+.+++..++.+..   .++++++.+|+.++ +.
T Consensus         9 ~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~~---~~~~~ii~~D~l~~~~~   82 (252)
T d1qyra_           9 VIDSIVSAINPQKGQAMVEIGPGLAALTEPVGER---LDQLTVIELDRDLAARLQTHPFL---GPKLTIYQQDAMTFNFG   82 (252)
T ss_dssp             HHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTT---CSCEEEECCCHHHHHHHHTCTTT---GGGEEEECSCGGGCCHH
T ss_pred             HHHHHHHhcCCCCCCEEEEECCCchHHHHHHHcc---CCceEEEEeccchhHHHHHHhhh---ccchhHHhhhhhhhccc
Confidence            3333444445667789999999999999999986   46899999999999988875432   25799999999863 22


Q ss_pred             HHhhcccCCCceeEEEEeCCccchHHHHHHHH
Q 029764           87 QLLKYSENEGSFDYAFVDADKDNYCNYHERLM  118 (188)
Q Consensus        87 ~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~  118 (188)
                      .+.+.   .+.--.|+.+.+..-..+.+..+.
T Consensus        83 ~~~~~---~~~~~~vvgNlPY~Iss~Il~~l~  111 (252)
T d1qyra_          83 ELAEK---MGQPLRVFGNLPYNISTPLMFHLF  111 (252)
T ss_dssp             HHHHH---HTSCEEEEEECCTTTHHHHHHHHH
T ss_pred             ccccc---cCCCeEEEecchHHHHHHHHHHhc
Confidence            22211   123235666655444445555543

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.54  E-value=4.5e-09  Score=77.43  Aligned_cols=90  Identities=16%  Similarity=0.180  Sum_probs=64.8

Q ss_pred             HHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           15 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        15 l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      .+...+..+|||||||+|..|..+++.   +.++++||+|+++++.+++.+..   .++++++++|+.+.  .+     .
T Consensus        24 ~~~~~~~d~VLEIGpG~G~LT~~L~~~---~~~v~aIE~D~~l~~~l~~~~~~---~~n~~ii~~D~l~~--~~-----~   90 (245)
T d1yuba_          24 QLNLKETDTVYEIGTGKGHLTTKLAKI---SKQVTSIELDSHLFNLSSEKLKL---NTRVTLIHQDILQF--QF-----P   90 (245)
T ss_dssp             HCCCCSSEEEEECSCCCSSCSHHHHHH---SSEEEESSSSCSSSSSSSCTTTT---CSEEEECCSCCTTT--TC-----C
T ss_pred             hcCCCCCCeEEEECCCccHHHHHHHhh---cCceeEeeecccchhhhhhhhhh---ccchhhhhhhhhcc--cc-----c
Confidence            344557779999999999999999987   45999999999999888766532   35799999999875  22     1


Q ss_pred             CCceeEEEEeCCccchHHHHHHH
Q 029764           95 EGSFDYAFVDADKDNYCNYHERL  117 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~  117 (188)
                      ...++.|+...+..-..+.+..+
T Consensus        91 ~~~~~~vv~NLPY~Ist~il~~~  113 (245)
T d1yuba_          91 NKQRYKIVGNIPYHLSTQIIKKV  113 (245)
T ss_dssp             CSSEEEEEEECCSSSCHHHHHHH
T ss_pred             cceeeeEeeeeehhhhHHHHHHH
Confidence            34556666665443334444443

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.49  E-value=6.8e-07  Score=62.49  Aligned_cols=100  Identities=17%  Similarity=0.190  Sum_probs=70.2

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHH--HHHhhcccCC
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL--DQLLKYSENE   95 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~   95 (188)
                      ..+..+|||+||+.|.++..+++.....+.++++|+.+-.           .. +++.++++|..+..  ...... ...
T Consensus        20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~-----------~i-~~~~~~~~d~~~~~~~~~~~~~-~~~   86 (180)
T d1ej0a_          20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD-----------PI-VGVDFLQGDFRDELVMKALLER-VGD   86 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC-----------CC-TTEEEEESCTTSHHHHHHHHHH-HTT
T ss_pred             cCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccccc-----------cc-CCceEeecccccchhhhhhhhh-ccC
Confidence            4567799999999999999999877667899999987621           22 45888898875421  111111 124


Q ss_pred             CceeEEEEeCCcc-----c---------hHHHHHHHHhccCcCeEEEEe
Q 029764           96 GSFDYAFVDADKD-----N---------YCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        96 ~~~D~i~id~~~~-----~---------~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ..+|+|+.|+.+.     .         ....+..+.+.|++||.+|+.
T Consensus        87 ~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K  135 (180)
T d1ej0a_          87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVK  135 (180)
T ss_dssp             CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEE
Confidence            6899999996421     1         123445556899999999997

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.49  E-value=1.4e-07  Score=74.61  Aligned_cols=118  Identities=17%  Similarity=0.132  Sum_probs=90.2

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCC------------CCEEEEEeCCchhHHHHHHHHHhcCCC
Q 029764            4 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE------------DGQITAIDVNRETYEIGLPIIKKAGVD   71 (188)
Q Consensus         4 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~------------~~~v~~iD~~~~~~~~a~~~~~~~~~~   71 (188)
                      |++...++|..++...+..+|+|..||+|.....+.+.+..            ...+.++|+++.....|+.++.-.+..
T Consensus       146 TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~  225 (425)
T d2okca1         146 TPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG  225 (425)
T ss_dssp             CCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             cchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCc
Confidence            67888899998888777889999999999998887765431            125999999999999999988777654


Q ss_pred             -CcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCcc--------------------chHHHHHHHHhccCcCeEEEE
Q 029764           72 -HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--------------------NYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        72 -~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~--------------------~~~~~~~~~~~~L~~gG~lv~  129 (188)
                       +...+..+|..+..        ....||+|+.+.+..                    ....++..+..+|++||.+.+
T Consensus       226 ~~~~~i~~~d~l~~~--------~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~i  296 (425)
T d2okca1         226 TDRSPIVCEDSLEKE--------PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAV  296 (425)
T ss_dssp             SSCCSEEECCTTTSC--------CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cccceeecCchhhhh--------cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEE
Confidence             34567788876421        246899999874321                    124588999999999996544

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=98.36  E-value=2.7e-07  Score=67.61  Aligned_cols=75  Identities=9%  Similarity=0.158  Sum_probs=62.8

Q ss_pred             CEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCC--------CCcEEEEEcchHHHHHHHhhccc
Q 029764           22 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV--------DHKINFIESEALSVLDQLLKYSE   93 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--------~~~~~~~~~d~~~~~~~~~~~~~   93 (188)
                      .+|||..+|.|..+..+|..   +++|+++|-+|......++.+++...        ..+++++++|+.+++.+.     
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~---G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~-----  161 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI-----  161 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC-----
T ss_pred             CEEEECCCcccHHHHHHHhC---CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhcc-----
Confidence            38999999999999999986   67999999999988888877765432        237999999999987654     


Q ss_pred             CCCceeEEEEeC
Q 029764           94 NEGSFDYAFVDA  105 (188)
Q Consensus        94 ~~~~~D~i~id~  105 (188)
                       ...||+|++|.
T Consensus       162 -~~~~DvIYlDP  172 (250)
T d2oyra1         162 -TPRPQVVYLDP  172 (250)
T ss_dssp             -SSCCSEEEECC
T ss_pred             -CCCCCEEEECC
Confidence             46799999996

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=1.5e-06  Score=70.40  Aligned_cols=120  Identities=11%  Similarity=0.028  Sum_probs=85.7

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCC-----------------CCEEEEEeCCchhHHHHHHHHH
Q 029764            4 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-----------------DGQITAIDVNRETYEIGLPIIK   66 (188)
Q Consensus         4 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~-----------------~~~v~~iD~~~~~~~~a~~~~~   66 (188)
                      |++...++|..++...++.+|+|..||+|...+.....+..                 ...++++|+++.....|+-++-
T Consensus       148 TP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~  227 (524)
T d2ar0a1         148 TPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL  227 (524)
T ss_dssp             CCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH
T ss_pred             cccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHH
Confidence            67788889988888777889999999999988776654321                 1258999999999999998877


Q ss_pred             hcCCCCc----EEEEEcchHHHHHHHhhcccCCCceeEEEEeCCcc-----------------chHHHHHHHHhccCcCe
Q 029764           67 KAGVDHK----INFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-----------------NYCNYHERLMKLLKVGG  125 (188)
Q Consensus        67 ~~~~~~~----~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~-----------------~~~~~~~~~~~~L~~gG  125 (188)
                      -.+....    -.+..++....-..      ...+||+|+.+.+..                 ....|+..+.+.|++||
T Consensus       228 l~~~~~~i~~~~~~~~~~~l~~d~~------~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gG  301 (524)
T d2ar0a1         228 LHDIEGNLDHGGAIRLGNTLGSDGE------NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGG  301 (524)
T ss_dssp             TTTCCCBGGGTBSEEESCTTSHHHH------TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEE
T ss_pred             hhcccccccccchhhhhhhhhhccc------ccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccC
Confidence            6664321    23444554432111      147899999885321                 12458999999999999


Q ss_pred             EEEE
Q 029764          126 IAVY  129 (188)
Q Consensus       126 ~lv~  129 (188)
                      .+.+
T Consensus       302 r~ai  305 (524)
T d2ar0a1         302 RAAV  305 (524)
T ss_dssp             EEEE
T ss_pred             cEEE
Confidence            7554

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=98.15  E-value=7.3e-06  Score=56.74  Aligned_cols=106  Identities=18%  Similarity=0.182  Sum_probs=71.6

Q ss_pred             HHHHcCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029764           15 LLRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   93 (188)
Q Consensus        15 l~~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   93 (188)
                      .+...++.+|+-+|||. |..++.+|+... ..+|+++|.+++..+.+++.    |...-+.....+..+.+.+..    
T Consensus        22 ~a~~~~g~~VlI~GaG~vGl~~~q~ak~~G-a~~Vi~~d~~~~r~~~a~~l----Ga~~~i~~~~~~~~~~v~~~t----   92 (174)
T d1jqba2          22 LADIEMGSSVVVIGIGAVGLMGIAGAKLRG-AGRIIGVGSRPICVEAAKFY----GATDILNYKNGHIEDQVMKLT----   92 (174)
T ss_dssp             HTTCCTTCCEEEECCSHHHHHHHHHHHTTT-CSCEEEECCCHHHHHHHHHH----TCSEEECGGGSCHHHHHHHHT----
T ss_pred             HhCCCCCCEEEEEcCCcchhhhhhhhhccc-ccccccccchhhhHHHHHhh----CccccccccchhHHHHHHHHh----
Confidence            35677888999999986 788888988753 35899999999988877653    432212222233344444432    


Q ss_pred             CCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764           94 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        94 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      ....+|+||-.....   ..++++.+.++++|.+++-..
T Consensus        93 ~g~G~D~vid~~g~~---~~~~~a~~~~~~~G~iv~~G~  128 (174)
T d1jqba2          93 NGKGVDRVIMAGGGS---ETLSQAVKMVKPGGIISNINY  128 (174)
T ss_dssp             TTSCEEEEEECSSCT---THHHHHHHHEEEEEEEEECCC
T ss_pred             hccCcceEEEccCCH---HHHHHHHHHHhcCCEEEEEee
Confidence            235699988654332   356788899999999998553

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.97  E-value=1.2e-05  Score=56.60  Aligned_cols=106  Identities=14%  Similarity=0.082  Sum_probs=74.0

Q ss_pred             HHHHcCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEE---EcchHHHHHHHhh
Q 029764           15 LLRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI---ESEALSVLDQLLK   90 (188)
Q Consensus        15 l~~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~---~~d~~~~~~~~~~   90 (188)
                      .+...++.+||-+|||. |..+..+|+... ..+|+++|.+++.++.|++.    |..   ..+   ..+..+.+.++. 
T Consensus        20 ~a~v~~G~tVlV~GaG~vGl~a~~~ak~~g-a~~Vi~~d~~~~rl~~a~~~----Ga~---~~~~~~~~~~~~~i~~~t-   90 (195)
T d1kola2          20 TAGVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAKAQ----GFE---IADLSLDTPLHEQIAALL-   90 (195)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHT----TCE---EEETTSSSCHHHHHHHHH-
T ss_pred             HhCCCCCCEEEEECcCHHHHHHHHHHHhhc-ccceeeecccchhhHhhhhc----ccc---EEEeCCCcCHHHHHHHHh-
Confidence            35677888999999997 667777887765 67999999999998877764    321   222   234444444432 


Q ss_pred             cccCCCceeEEEEeCCc------------cchHHHHHHHHhccCcCeEEEEecc
Q 029764           91 YSENEGSFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        91 ~~~~~~~~D~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                         ....+|.+|-....            ......++.+.+.+++||.+++-..
T Consensus        91 ---~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~  141 (195)
T d1kola2          91 ---GEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL  141 (195)
T ss_dssp             ---SSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             ---CCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence               24679998854221            1134678999999999999998654

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.89  E-value=2e-05  Score=54.67  Aligned_cols=107  Identities=14%  Similarity=0.141  Sum_probs=67.9

Q ss_pred             HHcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764           17 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        17 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      +..++.+||-+|+| .|..++.+|+... ..+|+++|.+++.++.+++.    |...-+.....+..+......+. ...
T Consensus        25 ~~~~G~~VlV~GaG~iG~~~~~~ak~~G-a~~Vi~~~~~~~~~~~a~~l----Ga~~vi~~~~~~~~~~~~~i~~~-~~~   98 (182)
T d1vj0a2          25 ESFAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLAEEI----GADLTLNRRETSVEERRKAIMDI-THG   98 (182)
T ss_dssp             SCCBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHHHT----TCSEEEETTTSCHHHHHHHHHHH-TTT
T ss_pred             CCCCCCEEEEECCCccchhheecccccc-cccccccccccccccccccc----cceEEEeccccchHHHHHHHHHh-hCC
Confidence            44567899999997 3678888888763 24899999999998877653    42211111123333332222111 123


Q ss_pred             CceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764           96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      ..+|+||-....   ...++.+.+.+++||.+++-..
T Consensus        99 ~g~Dvvid~vG~---~~~~~~a~~~l~~~G~iv~~G~  132 (182)
T d1vj0a2          99 RGADFILEATGD---SRALLEGSELLRRGGFYSVAGV  132 (182)
T ss_dssp             SCEEEEEECSSC---TTHHHHHHHHEEEEEEEEECCC
T ss_pred             CCceEEeecCCc---hhHHHHHHHHhcCCCEEEEEee
Confidence            579998854322   2346778899999999987553

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.84  E-value=6.2e-05  Score=51.74  Aligned_cols=100  Identities=17%  Similarity=0.291  Sum_probs=68.3

Q ss_pred             HHcCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE---cchHHHHHHHhhcc
Q 029764           17 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE---SEALSVLDQLLKYS   92 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~   92 (188)
                      +..++.+|+-+|+|. |..+..+++... ..+++.+|.+++.++.+++.    |..   +++.   .|..+.+.++    
T Consensus        25 ~~~~g~~VlI~G~G~iG~~~~~~ak~~g-~~~v~~~~~~~~k~~~a~~~----Ga~---~~i~~~~~~~~~~i~~~----   92 (174)
T d1f8fa2          25 KVTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAKQL----GAT---HVINSKTQDPVAAIKEI----   92 (174)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHH----
T ss_pred             CCCCCCEEEEeCCCHHHhhhhhcccccc-cceeeeeccHHHHHHHHHHc----CCe---EEEeCCCcCHHHHHHHH----
Confidence            466777999999974 346667777664 45888999999888887763    432   2333   3334443343    


Q ss_pred             cCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764           93 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        93 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                       ..+.+|+||-....   ...++.+.++++++|.+++-..
T Consensus        93 -t~gg~D~vid~~G~---~~~~~~~~~~~~~~G~i~~~G~  128 (174)
T d1f8fa2          93 -TDGGVNFALESTGS---PEILKQGVDALGILGKIAVVGA  128 (174)
T ss_dssp             -TTSCEEEEEECSCC---HHHHHHHHHTEEEEEEEEECCC
T ss_pred             -cCCCCcEEEEcCCc---HHHHHHHHhcccCceEEEEEee
Confidence             24689998865432   4567888999999999988543

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.79  E-value=2.3e-05  Score=53.71  Aligned_cols=99  Identities=21%  Similarity=0.161  Sum_probs=66.6

Q ss_pred             HHcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc-chHHHHHHHhhcccC
Q 029764           17 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSEN   94 (188)
Q Consensus        17 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~   94 (188)
                      ...++.+|+-+|+| .|..++.+|+..  +++++++|.+++.++.+++.    |..   .++.. +..+.....      
T Consensus        24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~--G~~vi~~~~~~~k~~~a~~l----Ga~---~~i~~~~~~~~~~~~------   88 (168)
T d1piwa2          24 GCGPGKKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSRKREDAMKM----GAD---HYIATLEEGDWGEKY------   88 (168)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHHH----TCS---EEEEGGGTSCHHHHS------
T ss_pred             CcCCCCEEEEECCCCcchhHHHHhhhc--cccccccccchhHHHHhhcc----CCc---EEeeccchHHHHHhh------
Confidence            56677899999998 667788888875  67999999999998887763    432   22322 222233332      


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      .+.+|.++....... ...++.+.+.++++|.+++-.
T Consensus        89 ~~~~d~vi~~~~~~~-~~~~~~~~~~l~~~G~iv~~G  124 (168)
T d1piwa2          89 FDTFDLIVVCASSLT-DIDFNIMPKAMKVGGRIVSIS  124 (168)
T ss_dssp             CSCEEEEEECCSCST-TCCTTTGGGGEEEEEEEEECC
T ss_pred             hcccceEEEEecCCc-cchHHHHHHHhhccceEEEec
Confidence            468998886422111 112566789999999999864

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=0.0001  Score=50.39  Aligned_cols=105  Identities=14%  Similarity=0.091  Sum_probs=67.7

Q ss_pred             HHcCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE-cchHHHHHHHhhcccC
Q 029764           17 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSEN   94 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~   94 (188)
                      +..++.+|+-+|+|. |..+..+++... ..+|+++|.+++.++.|++.    |... +.... .+..+....+...  .
T Consensus        23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G-~~~Vi~~d~~~~rl~~a~~~----Ga~~-~~~~~~~~~~~~~~~~~~~--~   94 (171)
T d1pl8a2          23 GVTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSATRLSKAKEI----GADL-VLQISKESPQEIARKVEGQ--L   94 (171)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHT----TCSE-EEECSSCCHHHHHHHHHHH--H
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHcC-CceEEeccCCHHHHHHHHHh----CCcc-ccccccccccccccccccc--C
Confidence            455678999999975 456667777754 34899999999998887763    4321 22222 2322222221111  1


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      ...+|++|-....   ...++.+.+.+++||.+++-..
T Consensus        95 g~g~Dvvid~~G~---~~~~~~a~~~~~~gG~iv~~G~  129 (171)
T d1pl8a2          95 GCKPEVTIECTGA---EASIQAGIYATRSGGTLVLVGL  129 (171)
T ss_dssp             TSCCSEEEECSCC---HHHHHHHHHHSCTTCEEEECSC
T ss_pred             CCCceEEEeccCC---chhHHHHHHHhcCCCEEEEEec
Confidence            4679998865322   4567888999999999998653

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.77  E-value=0.00047  Score=46.77  Aligned_cols=103  Identities=11%  Similarity=0.113  Sum_probs=68.6

Q ss_pred             HHcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc----chHHHHHHHhhc
Q 029764           17 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES----EALSVLDQLLKY   91 (188)
Q Consensus        17 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~----d~~~~~~~~~~~   91 (188)
                      ...++.+|+-+|+| .|..++.+++..  +.+|+++|.+++.++.+++.    +.  ...+...    +..+....+.+.
T Consensus        23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~--Ga~vi~v~~~~~r~~~a~~~----ga--~~~~~~~~~~~~~~~~~~~~~~~   94 (170)
T d1e3ja2          23 GVQLGTTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKNC----GA--DVTLVVDPAKEEESSIIERIRSA   94 (170)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHT----TC--SEEEECCTTTSCHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEcccccchhhHhhHhhh--cccccccchHHHHHHHHHHc----CC--cEEEeccccccccchhhhhhhcc
Confidence            45677899999988 567778888875  57999999999998888764    32  1222221    222222222211


Q ss_pred             ccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEecc
Q 029764           92 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        92 ~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                        ....+|+||-...   ....++.+.+.++++|.+++-..
T Consensus        95 --~g~g~D~vid~~g---~~~~~~~a~~~~~~~G~iv~~G~  130 (170)
T d1e3ja2          95 --IGDLPNVTIDCSG---NEKCITIGINITRTGGTLMLVGM  130 (170)
T ss_dssp             --SSSCCSEEEECSC---CHHHHHHHHHHSCTTCEEEECSC
T ss_pred             --cccCCceeeecCC---ChHHHHHHHHHHhcCCceEEEec
Confidence              2467898875432   24567888899999999998653

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=7.2e-05  Score=51.33  Aligned_cols=100  Identities=16%  Similarity=0.122  Sum_probs=66.7

Q ss_pred             HHcCCCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           17 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        17 ~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      +..++.+||-.|+  +.|..++.+|+..  +.++++++.+++..+.+++    .|...-+.....|..+.+....    .
T Consensus        25 ~~~~g~~VlV~Ga~G~vG~~aiq~a~~~--G~~vi~~~~~~~~~~~~~~----~Ga~~vi~~~~~~~~~~i~~~t----~   94 (174)
T d1yb5a2          25 CVKAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQ----NGAHEVFNHREVNYIDKIKKYV----G   94 (174)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSEEEETTSTTHHHHHHHHH----C
T ss_pred             CCCCCCEEEEEecccccccccccccccc--Ccccccccccccccccccc----cCcccccccccccHHHHhhhhh----c
Confidence            4557789999995  5777888899886  6799999988877666654    4543222222233334333332    2


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ...+|+|+-...    ...++...+.|+++|.++.-
T Consensus        95 ~~g~d~v~d~~g----~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2          95 EKGIDIIIEMLA----NVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             TTCEEEEEESCH----HHHHHHHHHHEEEEEEEEEC
T ss_pred             cCCceEEeeccc----HHHHHHHHhccCCCCEEEEE
Confidence            467998875432    34678888999999999974

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.71  E-value=0.00017  Score=48.89  Aligned_cols=101  Identities=14%  Similarity=0.146  Sum_probs=65.4

Q ss_pred             HHHcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           16 LRLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      +...++.+|+-+|+| .|..+..+++..  +.+|+++|.+++.++.+++    .|...-+.....|..+.+...      
T Consensus        23 ~~~~~g~~VlV~GaG~vG~~~~~~ak~~--G~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~~~------   90 (166)
T d1llua2          23 TNARPGQWVAISGIGGLGHVAVQYARAM--GLHVAAIDIDDAKLELARK----LGASLTVNARQEDPVEAIQRD------   90 (166)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHH------
T ss_pred             hCCCCCCEEEEeeccccHHHHHHHHHHc--CCccceecchhhHHHhhhc----cCccccccccchhHHHHHHHh------
Confidence            456777899999987 456777788775  5799999999998887765    343211111112333332222      


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      ...+|.++.+...   ...++.+.+.|+++|.+++-.
T Consensus        91 ~~g~~~~i~~~~~---~~~~~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2          91 IGGAHGVLVTAVS---NSAFGQAIGMARRGGTIALVG  124 (166)
T ss_dssp             HSSEEEEEECCSC---HHHHHHHHTTEEEEEEEEECC
T ss_pred             hcCCccccccccc---chHHHHHHHHhcCCcEEEEEE
Confidence            2445655555433   345788899999999999854

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.60  E-value=9.6e-05  Score=55.90  Aligned_cols=60  Identities=7%  Similarity=0.051  Sum_probs=49.2

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   84 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   84 (188)
                      ...+|||||+|.|..|..++.... ..+++++|.++...+..++.+.    .++++++++|+...
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~-~~~v~~iE~D~~~~~~L~~~~~----~~~~~ii~~D~l~~  102 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKFE----GSPLQILKRDPYDW  102 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHTT----TSSCEEECSCTTCH
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHhcc----CCCcEEEeCchhhc
Confidence            456899999999999999987632 3589999999999998887653    24689999998754

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.59  E-value=4e-05  Score=55.50  Aligned_cols=115  Identities=9%  Similarity=0.021  Sum_probs=67.3

Q ss_pred             cHHHHHHHHHHHH--HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchH
Q 029764            5 APDAGQLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   82 (188)
Q Consensus         5 ~~~~~~~l~~l~~--~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   82 (188)
                      ++...++....-.  ..+..+|+|+|||.|.++..++...+ ...+.++++--+..+.-. .....+ .+-+++...+..
T Consensus        49 SR~~~Kl~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~-v~~V~g~~iG~d~~e~P~-~~~~~~-~ni~~~~~~~dv  125 (257)
T d2p41a1          49 SRGSAKLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKN-VREVKGLTKGGPGHEEPI-PMSTYG-WNLVRLQSGVDV  125 (257)
T ss_dssp             STHHHHHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTT-EEEEEEECCCSTTSCCCC-CCCSTT-GGGEEEECSCCT
T ss_pred             chHHHHHHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcC-CCceeEEEecCccccCCc-cccccc-cccccchhhhhH
Confidence            3445555443322  34555899999999999999987643 567777776322100000 000001 123455554432


Q ss_pred             HHHHHHhhcccCCCceeEEEEeCCcc---------chHHHHHHHHhccCcCeEEEEe
Q 029764           83 SVLDQLLKYSENEGSFDYAFVDADKD---------NYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        83 ~~~~~~~~~~~~~~~~D~i~id~~~~---------~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ..+        .....|.|++|..+.         .....++.+.+.|++||-+++.
T Consensus       126 ~~l--------~~~~~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvK  174 (257)
T d2p41a1         126 FFI--------PPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK  174 (257)
T ss_dssp             TTS--------CCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             Hhc--------CCCcCCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEE
Confidence            221        247899999996331         1235667777999999998885

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.54  E-value=0.00037  Score=47.80  Aligned_cols=104  Identities=19%  Similarity=0.279  Sum_probs=70.0

Q ss_pred             HHHcCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcc-hHH-HHHHHhhcc
Q 029764           16 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE-ALS-VLDQLLKYS   92 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d-~~~-~~~~~~~~~   92 (188)
                      +...++.+|+-+|||. |..++.+++... ..+|+.+|.+++..+.+++.    |...-+.....| ... .....    
T Consensus        24 a~v~~G~~VlV~G~G~iGl~a~~~ak~~G-a~~Vi~~d~~~~r~~~a~~~----Ga~~~i~~~~~~~~~~~~~~~~----   94 (174)
T d1e3ia2          24 AKVTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKAKAL----GATDCLNPRELDKPVQDVITEL----   94 (174)
T ss_dssp             SCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHT----TCSEEECGGGCSSCHHHHHHHH----
T ss_pred             hCCCCCCEEEEECCChHHHHHHHHHHHhC-CceeeeeccchHHHHHHHHh----CCCcccCCccchhhhhhhHhhh----
Confidence            3456778999999987 788888998875 56899999999988777763    432211111222 222 22222    


Q ss_pred             cCCCceeEEEEeCCccchHHHHHHHHhccCcC-eEEEEecc
Q 029764           93 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNT  132 (188)
Q Consensus        93 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  132 (188)
                       ..+.+|++|-...   ....+++..+.+++| |.+++-..
T Consensus        95 -~~~G~d~vie~~G---~~~~~~~a~~~~~~g~G~~v~vG~  131 (174)
T d1e3ia2          95 -TAGGVDYSLDCAG---TAQTLKAAVDCTVLGWGSCTVVGA  131 (174)
T ss_dssp             -HTSCBSEEEESSC---CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred             -hcCCCcEEEEecc---cchHHHHHHHHhhcCCeEEEecCC
Confidence             1478999986532   345688899999996 99988543

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.52  E-value=0.00021  Score=48.61  Aligned_cols=104  Identities=18%  Similarity=0.144  Sum_probs=67.4

Q ss_pred             HHHcCCCEEEEEcc-c-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029764           16 LRLVNAKKTIEIGV-F-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   93 (188)
Q Consensus        16 ~~~~~~~~vLeiG~-g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   93 (188)
                      ....++.+|+-+|+ | .|..++.+++... ..+|+.+|.+++..+.+++.    |..   ..+..+..+......+. .
T Consensus        23 ~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g-~~~V~~~~~~~~~~~~~~~~----Ga~---~~i~~~~~~~~~~~~~~-~   93 (170)
T d1jvba2          23 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEAVEAAKRA----GAD---YVINASMQDPLAEIRRI-T   93 (170)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHHT-CCEEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHH-T
T ss_pred             hCCCCCCEEEEEeccccceeeeeecccccc-cccccccccchhhHHHHHHc----CCc---eeeccCCcCHHHHHHHH-h
Confidence            35667789999996 3 5566777777654 46999999999888877763    432   23333222222222111 1


Q ss_pred             CCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           94 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        94 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      ..+.+|+++-...   ....++.+.+.+++||.+++-.
T Consensus        94 ~~~~~d~vid~~g---~~~~~~~a~~~l~~~G~iv~~G  128 (170)
T d1jvba2          94 ESKGVDAVIDLNN---SEKTLSVYPKALAKQGKYVMVG  128 (170)
T ss_dssp             TTSCEEEEEESCC---CHHHHTTGGGGEEEEEEEEECC
T ss_pred             hcccchhhhcccc---cchHHHhhhhhcccCCEEEEec
Confidence            2457998876432   2456778889999999998864

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.41  E-value=0.00058  Score=46.35  Aligned_cols=107  Identities=16%  Similarity=0.179  Sum_probs=74.2

Q ss_pred             cCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           19 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        19 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      .+|.+|+-||+| .|..++..|..+  +.+|+.+|.+++.++..+..+.     .+++....+...+...+       ..
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~l--GA~V~~~D~~~~~l~~l~~~~~-----~~~~~~~~~~~~l~~~~-------~~   95 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVGL--GAQVQIFDINVERLSYLETLFG-----SRVELLYSNSAEIETAV-------AE   95 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHG-----GGSEEEECCHHHHHHHH-------HT
T ss_pred             CCCcEEEEECCChHHHHHHHHHhhC--CCEEEEEeCcHHHHHHHHHhhc-----ccceeehhhhhhHHHhh-------cc
Confidence            367899999999 577888888887  6899999999999888777653     24666666654444443       56


Q ss_pred             eeEEEEeCC---ccchHHHHHHHHhccCcCeEEEEeccccCcccc
Q 029764           98 FDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVA  139 (188)
Q Consensus        98 ~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~  139 (188)
                      .|+|+-...   ...+.-.-+.+.+.+|||.++|=-..-..|...
T Consensus        96 aDivI~aalipG~~aP~lIt~~mv~~Mk~GSVIVDvaidqGG~~E  140 (168)
T d1pjca1          96 ADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAVDQGGCVE  140 (168)
T ss_dssp             CSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTCTTCCSBT
T ss_pred             CcEEEEeeecCCcccCeeecHHHHhhcCCCcEEEEeecCCCCccc
Confidence            899987631   111112346678999999998854444444433

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.35  E-value=0.00042  Score=47.21  Aligned_cols=99  Identities=14%  Similarity=0.110  Sum_probs=65.3

Q ss_pred             HcCCCEEEEEcccch-HHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc--chHHHHHHHhhcccC
Q 029764           18 LVNAKKTIEIGVFTG-YSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES--EALSVLDQLLKYSEN   94 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G-~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~~~   94 (188)
                      ..++.+||-+|+|.. ..++.+++... ..+++++|.+++.++.+++.    +..   +++..  |..+...+..    .
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g-~~~vv~~~~~~~k~~~~~~~----ga~---~~i~~~~~~~~~~~~~~----~   97 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMT-PATVIALDVKEEKLKLAERL----GAD---HVVDARRDPVKQVMELT----R   97 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESSHHHHHHHHHT----TCS---EEEETTSCHHHHHHHHT----T
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhc-CcccccccchhHHHHHHhhc----ccc---eeecCcccHHHHHHHhh----C
Confidence            456789999998754 45567777654 56899999999887777753    322   33332  2222222221    2


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      ...+|++|-....   ...++...+.+++||.+++-.
T Consensus        98 ~~g~d~vid~~g~---~~~~~~a~~~l~~~G~iv~~G  131 (172)
T d1h2ba2          98 GRGVNVAMDFVGS---QATVDYTPYLLGRMGRLIIVG  131 (172)
T ss_dssp             TCCEEEEEESSCC---HHHHHHGGGGEEEEEEEEECC
T ss_pred             CCCceEEEEecCc---chHHHHHHHHHhCCCEEEEEe
Confidence            4579988865432   345788899999999999854

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=0.00076  Score=46.03  Aligned_cols=104  Identities=13%  Similarity=0.137  Sum_probs=67.2

Q ss_pred             HHHcCCCEEEEEccc--chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029764           16 LRLVNAKKTIEIGVF--TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   93 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g--~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   93 (188)
                      .+..++++||-.|++  .|..++.+|+..  +.+|++++.+++..+.+++    .|...-+.....|..+.+.++.    
T Consensus        24 ~~l~~g~~Vlv~ga~g~vG~~~iqlak~~--Ga~Vi~~~~s~~k~~~~~~----lGa~~vi~~~~~d~~~~v~~~t----   93 (179)
T d1qora2          24 YEIKPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGTAQKAQSALK----AGAWQVINYREEDLVERLKEIT----   93 (179)
T ss_dssp             SCCCTTCEEEESSTTBHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHT----
T ss_pred             hCCCCCCEEEEEccccccchHHHHHHHHh--CCeEeecccchHHHHHHHh----cCCeEEEECCCCCHHHHHHHHh----
Confidence            345667899998655  566788888874  6899999999998877765    3533212222234444444432    


Q ss_pred             CCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           94 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        94 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      ....+|+|+-....    +.+......++++|.+++....
T Consensus        94 ~g~g~d~v~d~~g~----~~~~~~~~~l~~~G~~v~~g~~  129 (179)
T d1qora2          94 GGKKVRVVYDSVGR----DTWERSLDCLQRRGLMVSFGNS  129 (179)
T ss_dssp             TTCCEEEEEECSCG----GGHHHHHHTEEEEEEEEECCCT
T ss_pred             CCCCeEEEEeCccH----HHHHHHHHHHhcCCeeeecccc
Confidence            24678976644322    2467788999999988875433

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=0.002  Score=43.44  Aligned_cols=98  Identities=17%  Similarity=0.214  Sum_probs=66.1

Q ss_pred             HHHcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           16 LRLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      ....++.+|+-+|+| .|..++.+|+..  +.+++.+|.+++..+.+++.    |..   .++.....+....      .
T Consensus        26 ~~~~~G~~VlI~GaG~vG~~a~qlak~~--Ga~~i~~~~~~~~~~~a~~l----Gad---~~i~~~~~~~~~~------~   90 (168)
T d1uufa2          26 WQAGPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKAL----GAD---EVVNSRNADEMAA------H   90 (168)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHH----TCS---EEEETTCHHHHHT------T
T ss_pred             hCCCCCCEEEEeccchHHHHHHHHhhcc--cccchhhccchhHHHHHhcc----CCc---EEEECchhhHHHH------h
Confidence            456778899999986 466778888875  67888999998887766653    432   2333332222222      2


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      ...+|.+|-......   .++...+.++++|.+++-.
T Consensus        91 ~~~~D~vid~~g~~~---~~~~~~~~l~~~G~iv~~G  124 (168)
T d1uufa2          91 LKSFDFILNTVAAPH---NLDDFTTLLKRDGTMTLVG  124 (168)
T ss_dssp             TTCEEEEEECCSSCC---CHHHHHTTEEEEEEEEECC
T ss_pred             cCCCceeeeeeecch---hHHHHHHHHhcCCEEEEec
Confidence            468999887643322   3567789999999999854

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=97.20  E-value=0.0012  Score=45.05  Aligned_cols=104  Identities=13%  Similarity=0.197  Sum_probs=64.7

Q ss_pred             HHHcCCCEEEEEcccch-HHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcc--hHHHHHHHhhcc
Q 029764           16 LRLVNAKKTIEIGVFTG-YSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE--ALSVLDQLLKYS   92 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g~G-~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d--~~~~~~~~~~~~   92 (188)
                      +...++.+|+-+|+|.. ..++.+++... ..+|+++|.+++.++.+++.    |...-+.....|  ..+.....    
T Consensus        23 a~~~~G~~VlV~GaGgvGl~a~~~ak~~G-~~~Vi~~d~~~~kl~~a~~l----Ga~~~i~~~~~d~~~~~~~~~~----   93 (174)
T d1p0fa2          23 AKVTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKDKFPKAIEL----GATECLNPKDYDKPIYEVICEK----   93 (174)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHHT----TCSEEECGGGCSSCHHHHHHHH----
T ss_pred             hCCCCCCEEEEECCCchhHHHHHHHHHcC-CceeeccCChHHHHHHHHHc----CCcEEEcCCCchhHHHHHHHHh----
Confidence            45667789999999854 46666777654 46899999999999888763    432212212223  22222222    


Q ss_pred             cCCCceeEEEEeCCccchHHHHHHHHhccC-cCeEEEEecc
Q 029764           93 ENEGSFDYAFVDADKDNYCNYHERLMKLLK-VGGIAVYDNT  132 (188)
Q Consensus        93 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~-~gG~lv~~~~  132 (188)
                       ..+.+|.+|-....   ...++.....++ ++|.+++-..
T Consensus        94 -~~~G~d~vid~~g~---~~~~~~~~~~~~~~~G~~v~vG~  130 (174)
T d1p0fa2          94 -TNGGVDYAVECAGR---IETMMNALQSTYCGSGVTVVLGL  130 (174)
T ss_dssp             -TTSCBSEEEECSCC---HHHHHHHHHTBCTTTCEEEECCC
T ss_pred             -cCCCCcEEEEcCCC---chHHHHHHHHHHHhcCceEEEEE
Confidence             24689999976433   334555555555 4688887553

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.20  E-value=0.0022  Score=43.83  Aligned_cols=105  Identities=14%  Similarity=0.172  Sum_probs=64.3

Q ss_pred             HHcCCCEEEEEcccch-HHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcch-HHHHHHHhhcccC
Q 029764           17 RLVNAKKTIEIGVFTG-YSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA-LSVLDQLLKYSEN   94 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G-~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~~   94 (188)
                      +..++.+|+-+|+|.. ..++.+++... ..+|+++|.+++.++.|++.    |-...+.....+. .+......    .
T Consensus        26 ~~~~g~tVlI~G~GgvGl~ai~~ak~~G-~~~Vi~vd~~~~kl~~Ak~~----GA~~~in~~~~~~~~~~~~~~~----~   96 (176)
T d1d1ta2          26 KVKPGSTCVVFGLGGVGLSVIMGCKSAG-ASRIIGIDLNKDKFEKAMAV----GATECISPKDSTKPISEVLSEM----T   96 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHH----TCSEEECGGGCSSCHHHHHHHH----H
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcC-CceEEEecCcHHHHHHHHhc----CCcEEECccccchHHHHHHHHh----c
Confidence            3566779999999854 46667777654 57999999999999998886    3221122122221 22222221    1


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHh-ccCcCeEEEEeccc
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMK-LLKVGGIAVYDNTL  133 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~-~L~~gG~lv~~~~~  133 (188)
                      ...+|.++......   ..+..... +.+.+|.+++-...
T Consensus        97 g~G~d~vi~~~g~~---~~~~~a~~~~~~~~G~~v~vG~~  133 (176)
T d1d1ta2          97 GNNVGYTFEVIGHL---ETMIDALASCHMNYGTSVVVGVP  133 (176)
T ss_dssp             TSCCCEEEECSCCH---HHHHHHHTTSCTTTCEEEECSCC
T ss_pred             cccceEEEEeCCch---HHHHHHHHHhhcCCeEEEEEEcc
Confidence            46899888765332   33344444 44565888886543

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.18  E-value=0.00034  Score=47.99  Aligned_cols=100  Identities=15%  Similarity=0.063  Sum_probs=64.2

Q ss_pred             HHcCCCEEEEEc--ccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           17 RLVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        17 ~~~~~~~vLeiG--~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      +..++.+||-.|  ++.|..++.+|+..  +.+++++.-+++..+.+++    .|...-+.....|..+.+.+..    .
T Consensus        22 ~~~~g~~VlI~ga~g~vG~~~iqla~~~--g~~vi~~~~~~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~t----~   91 (183)
T d1pqwa_          22 RLSPGERVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLSR----LGVEYVGDSRSVDFADEILELT----D   91 (183)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHT----TCCSEEEETTCSTHHHHHHHHT----T
T ss_pred             CCCCCCEEEEECCCCCcccccchhhccc--cccceeeeccccccccccc----ccccccccCCccCHHHHHHHHh----C
Confidence            455677899877  45677888888875  6788888877776665553    4543211111223333333332    2


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      ...+|+||-...    .+.++.+++.|+++|.++.-
T Consensus        92 ~~g~d~v~d~~g----~~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          92 GYGVDVVLNSLA----GEAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             TCCEEEEEECCC----THHHHHHHHTEEEEEEEEEC
T ss_pred             CCCEEEEEeccc----chHHHHHHHHhcCCCEEEEE
Confidence            367999996433    23567888999999999974

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.13  E-value=0.0015  Score=43.95  Aligned_cols=101  Identities=18%  Similarity=0.192  Sum_probs=65.2

Q ss_pred             HHHcCCCEEEEEcccc-hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029764           16 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   94 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   94 (188)
                      ....++.+||-.|+|. |..++.+++..  +.+++.++.+++.++.+++    .|...-+.....|....+....     
T Consensus        23 ~~~~~g~~vlv~G~G~iG~~a~~~a~~~--g~~v~~~~~~~~r~~~~k~----~Ga~~~~~~~~~~~~~~~~~~~-----   91 (168)
T d1rjwa2          23 TGAKPGEWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKE----LGADLVVNPLKEDAAKFMKEKV-----   91 (168)
T ss_dssp             HTCCTTCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTCSEEECTTTSCHHHHHHHHH-----
T ss_pred             hCCCCCCEEEEeecccchhhhhHHHhcC--CCeEeccCCCHHHhhhhhh----cCcceecccccchhhhhccccc-----
Confidence            4566778999999875 44566677764  5799999999998877765    3432111111223333333332     


Q ss_pred             CCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           95 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        95 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                       ..+|.++.+..   ....++...+.++++|.+++-.
T Consensus        92 -~~~~~~v~~~~---~~~~~~~a~~~l~~~G~i~~~g  124 (168)
T d1rjwa2          92 -GGVHAAVVTAV---SKPAFQSAYNSIRRGGACVLVG  124 (168)
T ss_dssp             -SSEEEEEESSC---CHHHHHHHHHHEEEEEEEEECC
T ss_pred             -CCCceEEeecC---CHHHHHHHHHHhccCCceEecc
Confidence             44555666543   2456788999999999999854

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.05  E-value=0.0035  Score=42.45  Aligned_cols=96  Identities=18%  Similarity=0.162  Sum_probs=62.8

Q ss_pred             HHHcCCCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029764           16 LRLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   93 (188)
Q Consensus        16 ~~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   93 (188)
                      .+..++++||-.|.  +.|..++.+|+..  +.++++++.+++..+.+++    .|... + +-..+.......      
T Consensus        23 ~~~~~g~~VlI~ga~G~vG~~aiqlak~~--G~~vi~~~~~~~~~~~~~~----lGa~~-~-i~~~~~~~~~~~------   88 (171)
T d1iz0a2          23 AQARPGEKVLVQAAAGALGTAAVQVARAM--GLRVLAAASRPEKLALPLA----LGAEE-A-ATYAEVPERAKA------   88 (171)
T ss_dssp             TTCCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSGGGSHHHHH----TTCSE-E-EEGGGHHHHHHH------
T ss_pred             hCCCCCCEEEEEeccccchhhhhhhhccc--ccccccccccccccccccc----cccce-e-eehhhhhhhhhc------
Confidence            34667789999884  4567888889875  6799999999888777665    35332 1 111222222221      


Q ss_pred             CCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           94 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        94 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                       ...+|+||= ..-    +.++.+.+.|+++|.++.-.
T Consensus        89 -~~g~D~v~d-~~G----~~~~~~~~~l~~~G~~v~~G  120 (171)
T d1iz0a2          89 -WGGLDLVLE-VRG----KEVEESLGLLAHGGRLVYIG  120 (171)
T ss_dssp             -TTSEEEEEE-CSC----TTHHHHHTTEEEEEEEEEC-
T ss_pred             -ccccccccc-ccc----hhHHHHHHHHhcCCcEEEEe
Confidence             468998864 321    23577889999999998753

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.86  E-value=0.0037  Score=42.09  Aligned_cols=90  Identities=18%  Similarity=0.237  Sum_probs=56.4

Q ss_pred             CEEEEEcccc-hHHHH-HHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764           22 KKTIEIGVFT-GYSLL-LTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   99 (188)
Q Consensus        22 ~~vLeiG~g~-G~~~~-~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   99 (188)
                      ++|+=||||. |.+-. .+.+. ....+|+++|.+++.++.+++.    +.   +.....+....         .....|
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~-g~~~~I~~~D~~~~~~~~a~~~----~~---~~~~~~~~~~~---------~~~~~d   64 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRS-GFKGKIYGYDINPESISKAVDL----GI---IDEGTTSIAKV---------EDFSPD   64 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHT-TCCSEEEEECSCHHHHHHHHHT----TS---CSEEESCGGGG---------GGTCCS
T ss_pred             CEEEEEccCHHHHHHHHHHHhc-CCCeEEEEEECChHHHHHHHHh----hc---chhhhhhhhhh---------hccccc
Confidence            3577899863 33322 23222 2246899999999988877764    22   11122222111         024679


Q ss_pred             EEEEeCCccchHHHHHHHHhccCcCeEEE
Q 029764          100 YAFVDADKDNYCNYHERLMKLLKVGGIAV  128 (188)
Q Consensus       100 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv  128 (188)
                      +|++..+.....+.++.+.+.++++.+++
T Consensus        65 lIila~p~~~~~~vl~~l~~~~~~~~ii~   93 (171)
T d2g5ca2          65 FVMLSSPVRTFREIAKKLSYILSEDATVT   93 (171)
T ss_dssp             EEEECSCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred             cccccCCchhhhhhhhhhhcccccccccc
Confidence            99998877777888888888888776554

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=96.79  E-value=0.0024  Score=43.64  Aligned_cols=105  Identities=10%  Similarity=0.058  Sum_probs=67.0

Q ss_pred             HHHHHHcCCCEEEEEcccc--hHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhh
Q 029764           13 AMLLRLVNAKKTIEIGVFT--GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK   90 (188)
Q Consensus        13 ~~l~~~~~~~~vLeiG~g~--G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   90 (188)
                      ....+..++.+||-.|.+.  |..++.+|+..  +.+++++.-+++..+.+++    .|...-+.....+..+...... 
T Consensus        22 ~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~~----~Ga~~vi~~~~~~~~~~~~~~~-   94 (182)
T d1v3va2          22 LEVCGVKGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQ----IGFDAAFNYKTVNSLEEALKKA-   94 (182)
T ss_dssp             HTTTCCCSSCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSEEEETTSCSCHHHHHHHH-
T ss_pred             HHHhCCCCCCEEEEEeCCCchhHHHHHHHHcc--CCEEEEeCCCHHHHHHHHh----hhhhhhcccccccHHHHHHHHh-
Confidence            3344567788999888754  55777788875  6899999988877665554    3532212111222233222221 


Q ss_pred             cccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           91 YSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        91 ~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                         ....+|+||=...    .+.++.+++.|+++|.++...
T Consensus        95 ---~~~Gvd~v~D~vG----~~~~~~~~~~l~~~G~~v~~G  128 (182)
T d1v3va2          95 ---SPDGYDCYFDNVG----GEFLNTVLSQMKDFGKIAICG  128 (182)
T ss_dssp             ---CTTCEEEEEESSC----HHHHHHHGGGEEEEEEEEECC
T ss_pred             ---hcCCCceeEEecC----chhhhhhhhhccCCCeEEeec
Confidence               2467999875321    356788999999999999853

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=96.73  E-value=0.0022  Score=45.90  Aligned_cols=54  Identities=11%  Similarity=0.140  Sum_probs=43.6

Q ss_pred             HHHHHHHHH--cCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHH
Q 029764           10 QLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK   66 (188)
Q Consensus        10 ~~l~~l~~~--~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~   66 (188)
                      +++..++..  .++..|||..+|+|..+....+.   +.+.+++|++++.++.|+++++
T Consensus       200 ~L~~~lI~~~s~~gd~VlDpF~GSGTT~~aa~~~---~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         200 DLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKL---GRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             HHHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhCCCCCEEEECCCCchHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHc
Confidence            455555543  45679999999999998876664   6799999999999999999875

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.66  E-value=0.0059  Score=41.17  Aligned_cols=101  Identities=16%  Similarity=0.245  Sum_probs=64.3

Q ss_pred             HHHcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE--cchHHHHHHHhhcc
Q 029764           16 LRLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYS   92 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~   92 (188)
                      .+..++.+||-.|+| .|..++.+++... ..+|+++|.+++..+.+++.    |...-+....  .+........    
T Consensus        24 ~~~~~G~tVlI~GaGGvG~~aiq~ak~~G-~~~vi~~~~~~~k~~~ak~l----Ga~~~i~~~~~~~~~~~~~~~~----   94 (176)
T d2fzwa2          24 AKLEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDKFARAKEF----GATECINPQDFSKPIQEVLIEM----   94 (176)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHHH----TCSEEECGGGCSSCHHHHHHHH----
T ss_pred             hCCCCCCEEEEecchhHHHHHHHHHHHHh-cCceEEEcccHHHHHHHHHh----CCcEEEeCCchhhHHHHHHHHH----
Confidence            356777899988886 3456677777764 56899999999998877763    4322111111  1222233222    


Q ss_pred             cCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764           93 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        93 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                       ..+.+|+||-....   ...++.+..++++||.+++
T Consensus        95 -~~~g~D~vid~~G~---~~~~~~~~~~~~~g~~~~~  127 (176)
T d2fzwa2          95 -TDGGVDYSFECIGN---VKVMRAALEACHKGWGVSV  127 (176)
T ss_dssp             -TTSCBSEEEECSCC---HHHHHHHHHTBCTTTCEEE
T ss_pred             -cCCCCcEeeecCCC---HHHHHHHHHhhcCCceeEE
Confidence             24679999875432   3567788889999876654

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.63  E-value=0.0031  Score=45.70  Aligned_cols=56  Identities=9%  Similarity=-0.011  Sum_probs=45.2

Q ss_pred             HHHHHHHH--HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhc
Q 029764           10 QLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA   68 (188)
Q Consensus        10 ~~l~~l~~--~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~   68 (188)
                      +++..++.  -.++..|||..+|+|..++.....   +.+.+++|++++..+.|+++++..
T Consensus       195 ~L~~~~I~~~s~~gdiVLDpF~GSGTT~~Aa~~l---gR~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         195 AVIERLVRALSHPGSTVLDFFAGSGVTARVAIQE---GRNSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             HHHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHH---TCEEEEEESSTHHHHHHHHHHHHC
T ss_pred             hHHHHHHHhhcCCCCEEEecCCCCcHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHh
Confidence            34444444  346779999999999998887765   679999999999999999998764

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=96.47  E-value=0.0022  Score=47.38  Aligned_cols=55  Identities=9%  Similarity=0.018  Sum_probs=43.6

Q ss_pred             HHHHHHHH--HcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHh
Q 029764           10 QLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK   67 (188)
Q Consensus        10 ~~l~~l~~--~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~   67 (188)
                      .|+..++.  ..++..|||..+|+|..+......   +.+.+++|++++.++.|++++..
T Consensus       238 ~L~~rlI~~~s~~gdiVlDpF~GSGTT~~AA~~l---gR~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         238 KLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERE---SRKWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             HHHHHHHHHHCCTTCEEEETTCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHGGGSC
T ss_pred             HHHHHhhhhcccCCCEEEecCCCCcHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHHHh
Confidence            44555544  346679999999999988876654   67999999999999999987754

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.41  E-value=0.012  Score=40.18  Aligned_cols=104  Identities=11%  Similarity=0.088  Sum_probs=64.6

Q ss_pred             HHHHcCC--CEEEEEc--ccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhh
Q 029764           15 LLRLVNA--KKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK   90 (188)
Q Consensus        15 l~~~~~~--~~vLeiG--~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   90 (188)
                      ..+..++  ++||-.|  .|.|..++.+|+.+. ..+|+++..+++......   ...+...-+.....+..+.+.... 
T Consensus        23 ~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~G-a~~vi~~~~~~e~~~~l~---~~~gad~vi~~~~~~~~~~~~~~~-   97 (187)
T d1vj1a2          23 KGHISAGSNQTMVVSGAAGACGSLAGQIGHLLG-CSRVVGICGTQEKCLFLT---SELGFDAAVNYKTGNVAEQLREAC-   97 (187)
T ss_dssp             HSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTT-CSEEEEEESSHHHHHHHH---HHSCCSEEEETTSSCHHHHHHHHC-
T ss_pred             HhCCCCCCCCEEEEECCCchhhHHHHHHHHHcC-CcceecccchHHHHhhhh---hcccceEEeeccchhHHHHHHHHh-
Confidence            3344544  6788877  568889999999874 446777777665443332   233533222333334445554442 


Q ss_pred             cccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           91 YSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        91 ~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                          ...+|+||=...    .+.++...+.|+++|.++.-.
T Consensus        98 ----~~GvDvv~D~vG----g~~~~~~~~~l~~~G~iv~~G  130 (187)
T d1vj1a2          98 ----PGGVDVYFDNVG----GDISNTVISQMNENSHIILCG  130 (187)
T ss_dssp             ----TTCEEEEEESSC----HHHHHHHHTTEEEEEEEEEC-
T ss_pred             ----ccCceEEEecCC----chhHHHHhhhccccccEEEec
Confidence                467999973321    346788899999999998753

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=96.35  E-value=0.015  Score=39.19  Aligned_cols=99  Identities=13%  Similarity=0.313  Sum_probs=62.7

Q ss_pred             HHHcCCCEEEEEcccch-HHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEE-c---chHH-HHHHHh
Q 029764           16 LRLVNAKKTIEIGVFTG-YSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-S---EALS-VLDQLL   89 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g~G-~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~-~---d~~~-~~~~~~   89 (188)
                      .+..++.+||-+|+|.+ ..++.+++... ..+|+++|.+++..+.+++.    +..   ..+. .   +..+ ..... 
T Consensus        24 ~~vk~GdtVlV~GaGG~G~~~~~~~~~~g-~~~Vi~~~~~~~k~~~a~~~----Ga~---~~i~~~~~~~~~~~~~~~~-   94 (176)
T d2jhfa2          24 AKVTQGSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINKDKFAKAKEV----GAT---ECVNPQDYKKPIQEVLTEM-   94 (176)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHT----TCS---EEECGGGCSSCHHHHHHHH-
T ss_pred             hCCCCCCEEEEECCCCcHHHHHHHHHHcC-CceEEeecCcHHHHHHHHHh----CCe---eEEecCCchhHHHHHHHHH-
Confidence            34667789999998644 46666777664 67999999999998877764    322   2222 1   2222 22222 


Q ss_pred             hcccCCCceeEEEEeCCccchHHHHHHHHhccCcC-eEEEEe
Q 029764           90 KYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYD  130 (188)
Q Consensus        90 ~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~  130 (188)
                          ..+.+|++|-....   ...++.+...++++ |.+++-
T Consensus        95 ----~~~G~D~vid~~G~---~~~~~~a~~~~~~~~g~~~~~  129 (176)
T d2jhfa2          95 ----SNGGVDFSFEVIGR---LDTMVTALSCCQEAYGVSVIV  129 (176)
T ss_dssp             ----TTSCBSEEEECSCC---HHHHHHHHHHBCTTTCEEEEC
T ss_pred             ----hcCCCCEEEecCCc---hhHHHHHHHHHhcCCcceEEe
Confidence                24689998876433   34566677777776 566654

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=96.24  E-value=0.012  Score=39.62  Aligned_cols=102  Identities=15%  Similarity=0.210  Sum_probs=60.8

Q ss_pred             HHHcCCCEEEEEcccchH-HHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEc-chHHHHHHHhhccc
Q 029764           16 LRLVNAKKTIEIGVFTGY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSE   93 (188)
Q Consensus        16 ~~~~~~~~vLeiG~g~G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~   93 (188)
                      ++..++.+|+-+|+|.+. .+..+++... ..+|+++|.+++.++.+++    +|...-+..... +..+......    
T Consensus        24 a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g-~~~Vi~~~~~~~rl~~a~~----~GAd~~in~~~~~~~~~~~~~~~----   94 (175)
T d1cdoa2          24 AKVEPGSTCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNPDKFEKAKV----FGATDFVNPNDHSEPISQVLSKM----   94 (175)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH----TTCCEEECGGGCSSCHHHHHHHH----
T ss_pred             hCCCCCCEEEEEecCCccchHHHHHHHHh-hchheeecchHHHHHHHHH----cCCcEEEcCCCcchhHHHHHHhh----
Confidence            356677899999998754 5555666554 6799999999998887775    343221111111 1112222221    


Q ss_pred             CCCceeEEEEeCCccchHHHHHHHHhccCcC-eEEEE
Q 029764           94 NEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVY  129 (188)
Q Consensus        94 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~  129 (188)
                      ....+|+++-....   ...+..+..++++| +.+++
T Consensus        95 ~~~G~d~vid~~G~---~~~~~~a~~~~~~g~~~~~~  128 (175)
T d1cdoa2          95 TNGGVDFSLECVGN---VGVMRNALESCLKGWGVSVL  128 (175)
T ss_dssp             HTSCBSEEEECSCC---HHHHHHHHHTBCTTTCEEEE
T ss_pred             ccCCcceeeeecCC---HHHHHHHHHHhhCCCcceeE
Confidence            14689999876433   34456666666665 55554

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=96.23  E-value=0.0083  Score=41.12  Aligned_cols=109  Identities=12%  Similarity=0.124  Sum_probs=64.9

Q ss_pred             HHHHcCCCEEEEE--cc-cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchH---HHHHHH
Q 029764           15 LLRLVNAKKTIEI--GV-FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL---SVLDQL   88 (188)
Q Consensus        15 l~~~~~~~~vLei--G~-g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~---~~~~~~   88 (188)
                      .....++.++|-+  |+ |.|..++.+|+..  +.+++++--+++..+...+.+.+.|....+..-..+..   +.+.++
T Consensus        23 ~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~--Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~  100 (189)
T d1gu7a2          23 YVKLTPGKDWFIQNGGTSAVGKYASQIGKLL--NFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEW  100 (189)
T ss_dssp             SSCCCTTTCEEEESCTTSHHHHHHHHHHHHH--TCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHH
T ss_pred             HhCCCCCCEEEEEeCCCchHHHHHHHHHhhc--CCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHH
Confidence            3445566677776  33 3577888899986  67888876666666666666677775432221111111   122222


Q ss_pred             hhcccCCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764           89 LKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        89 ~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      ...  ....+|++| |..-   .+.++...+.|+++|.++.-.
T Consensus       101 ~~~--~g~~vdvv~-D~vg---~~~~~~~~~~l~~~G~~v~~G  137 (189)
T d1gu7a2         101 IKQ--SGGEAKLAL-NCVG---GKSSTGIARKLNNNGLMLTYG  137 (189)
T ss_dssp             HHH--HTCCEEEEE-ESSC---HHHHHHHHHTSCTTCEEEECC
T ss_pred             Hhh--ccCCceEEE-ECCC---cchhhhhhhhhcCCcEEEEEC
Confidence            111  145788888 3321   334677889999999998753

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.18  E-value=0.02  Score=38.05  Aligned_cols=87  Identities=13%  Similarity=-0.014  Sum_probs=55.9

Q ss_pred             EEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029764           23 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  101 (188)
Q Consensus        23 ~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i  101 (188)
                      +|.=||+|  ..+..+|+.+. .+.+|++.|.+++..+.+++.    +..+   ....+. +   .       -...|+|
T Consensus         2 kI~iIG~G--~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~----~~~~---~~~~~~-~---~-------~~~~DiI   61 (165)
T d2f1ka2           2 KIGVVGLG--LIGASLAGDLRRRGHYLIGVSRQQSTCEKAVER----QLVD---EAGQDL-S---L-------LQTAKII   61 (165)
T ss_dssp             EEEEECCS--HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----TSCS---EEESCG-G---G-------GTTCSEE
T ss_pred             EEEEEeec--HHHHHHHHHHHHCCCEEEEEECCchHHHHHHHh----hccc---eeeeec-c---c-------ccccccc
Confidence            46667775  44433443331 267999999998877766552    3221   112222 1   1       2578999


Q ss_pred             EEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764          102 FVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus       102 ~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      |+..+.....+.++++.+.++++.+++-
T Consensus        62 ilavp~~~~~~vl~~l~~~l~~~~iv~~   89 (165)
T d2f1ka2          62 FLCTPIQLILPTLEKLIPHLSPTAIVTD   89 (165)
T ss_dssp             EECSCHHHHHHHHHHHGGGSCTTCEEEE
T ss_pred             cccCcHhhhhhhhhhhhhhcccccceee
Confidence            9987777778888999888888887754

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=95.94  E-value=0.015  Score=39.64  Aligned_cols=111  Identities=21%  Similarity=0.155  Sum_probs=66.9

Q ss_pred             HcCCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcC-C--C--CcE------------EEEEc
Q 029764           18 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG-V--D--HKI------------NFIES   79 (188)
Q Consensus        18 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~-~--~--~~~------------~~~~~   79 (188)
                      ..+|-+|+-||.| .|..++..|..+  +++|+.+|.+++.++..++...+.= +  .  ...            ++...
T Consensus        26 ~V~pa~VvViGaGvaG~~Aa~~A~~l--GA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~  103 (183)
T d1l7da1          26 TVPPARVLVFGVGVAGLQAIATAKRL--GAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKK  103 (183)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CC
T ss_pred             CcCCcEEEEEcCcHHHHHHHHHHHHc--CCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHH
Confidence            3467799999999 467888888887  6899999999999887776532210 0  0  000            01111


Q ss_pred             chHHHHHHHhhcccCCCceeEEEEeCC---ccchHHHHHHHHhccCcCeEEEEeccccCcc
Q 029764           80 EALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWGGT  137 (188)
Q Consensus        80 d~~~~~~~~~~~~~~~~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~  137 (188)
                      . .+.+.+.      -...|+|+...-   ...+.-.-+.+.+.+|||.++|=-..-..|.
T Consensus       104 ~-~~~l~~~------l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvaidqGGn  157 (183)
T d1l7da1         104 Q-AEAVLKE------LVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGN  157 (183)
T ss_dssp             H-HHHHHHH------HTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTCS
T ss_pred             H-HHHHHHH------HHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEeecCCCc
Confidence            1 1112221      256899987631   1122223467889999999988544444443

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.93  E-value=0.024  Score=36.30  Aligned_cols=92  Identities=15%  Similarity=0.147  Sum_probs=58.1

Q ss_pred             EEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCcee
Q 029764           23 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSFD   99 (188)
Q Consensus        23 ~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~D   99 (188)
                      +|+=+|+  |..+..+++.+. .+..|+.+|.+++.++.+++.+       ...++.||+.+  .+...     .-...|
T Consensus         2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-------~~~vi~Gd~~~~~~l~~~-----~i~~a~   67 (132)
T d1lssa_           2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-------DALVINGDCTKIKTLEDA-----GIEDAD   67 (132)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-------SSEEEESCTTSHHHHHHT-----TTTTCS
T ss_pred             EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-------hhhhccCcccchhhhhhc-----Chhhhh
Confidence            4666665  888888777663 3568999999999887766532       25688898765  44433     245788


Q ss_pred             EEEEeCCccchHHHHHHHHhccCcCeEEE
Q 029764          100 YAFVDADKDNYCNYHERLMKLLKVGGIAV  128 (188)
Q Consensus       100 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv  128 (188)
                      .+++-.......-......+.+.+.-.++
T Consensus        68 ~vv~~t~~d~~N~~~~~~~k~~~~~~iI~   96 (132)
T d1lssa_          68 MYIAVTGKEEVNLMSSLLAKSYGINKTIA   96 (132)
T ss_dssp             EEEECCSCHHHHHHHHHHHHHTTCCCEEE
T ss_pred             hhcccCCcHHHHHHHHHHHHHcCCceEEE
Confidence            88775433332223344445666665443

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.11  Score=37.10  Aligned_cols=84  Identities=11%  Similarity=0.034  Sum_probs=57.9

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHHhh
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLK   90 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~   90 (188)
                      ..+++.+|-.|++.|- +..+|+.+ ..+.+|+.++.+++.++.+.+.+...+...++.+++.|..+      .+....+
T Consensus         7 ~lk~Kv~lITGas~GI-G~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~   85 (257)
T d1xg5a_           7 RWRDRLALVTGASGGI-GAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRS   85 (257)
T ss_dssp             GGTTCEEEEESTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            3568899999987764 23333332 13789999999999999988888887766678888877543      2222222


Q ss_pred             cccCCCceeEEEEeC
Q 029764           91 YSENEGSFDYAFVDA  105 (188)
Q Consensus        91 ~~~~~~~~D~i~id~  105 (188)
                      .   .+.+|+++..+
T Consensus        86 ~---~g~iD~lVnnA   97 (257)
T d1xg5a_          86 Q---HSGVDICINNA   97 (257)
T ss_dssp             H---HCCCSEEEECC
T ss_pred             h---cCCCCEEEecc
Confidence            2   47899988663

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=95.79  E-value=0.095  Score=38.43  Aligned_cols=110  Identities=8%  Similarity=0.008  Sum_probs=68.8

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCC--CcEEEEEcchHH-HHHHHhhcccCCC
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD--HKINFIESEALS-VLDQLLKYSENEG   96 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~~~~~~~d~~~-~~~~~~~~~~~~~   96 (188)
                      ....|+.+|||.=.-...+  ..+.+.+++=+|. |+.++.-++.+.+.+..  .+..++..|..+ ....+.+.+.+..
T Consensus        89 g~~qvV~LGaGlDTr~~Rl--~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~  165 (297)
T d2uyoa1          89 GIRQFVILASGLDSRAYRL--DWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPS  165 (297)
T ss_dssp             TCCEEEEETCTTCCHHHHS--CCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTT
T ss_pred             CCCeEEEeCcccCChhhhc--CCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCC
Confidence            4567888998665554443  3344677888885 88888777778776543  445666666554 3333433211222


Q ss_pred             ceeEEEEeC-----CccchHHHHHHHHhccCcCeEEEEecc
Q 029764           97 SFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNT  132 (188)
Q Consensus        97 ~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~  132 (188)
                      ..-+++..+     ..+....+++.+..+..+|+.|+++-.
T Consensus       166 ~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~  206 (297)
T d2uyoa1         166 ARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETS  206 (297)
T ss_dssp             SCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECC
T ss_pred             CCEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEec
Confidence            222334333     345567889999999999999999754

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=95.75  E-value=0.025  Score=36.04  Aligned_cols=91  Identities=10%  Similarity=0.016  Sum_probs=61.0

Q ss_pred             EEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCceeE
Q 029764           23 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSFDY  100 (188)
Q Consensus        23 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~D~  100 (188)
                      +++=+  |.|..+..+++.+. +..++.+|.+++..+.+++    .    .+.++.||+.+  .+...     .-...+.
T Consensus         2 HivI~--G~g~~g~~l~~~L~-~~~i~vi~~d~~~~~~~~~----~----~~~~i~Gd~~~~~~L~~a-----~i~~A~~   65 (129)
T d2fy8a1           2 HVVIC--GWSESTLECLRELR-GSEVFVLAEDENVRKKVLR----S----GANFVHGDPTRVSDLEKA-----NVRGARA   65 (129)
T ss_dssp             CEEEE--SCCHHHHHHHHTSC-GGGEEEEESCTTHHHHHHH----T----TCEEEESCTTSHHHHHHT-----TCTTCSE
T ss_pred             EEEEE--CCCHHHHHHHHHHc-CCCCEEEEcchHHHHHHHh----c----CccccccccCCHHHHHHh-----hhhcCcE
Confidence            45554  55889999999986 6778999999998765542    2    36788899755  34332     2467888


Q ss_pred             EEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764          101 AFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus       101 i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      +++..+.....-..-...+.+.|...++.
T Consensus        66 vi~~~~~d~~n~~~~~~~r~~~~~~~iia   94 (129)
T d2fy8a1          66 VIVNLESDSETIHCILGIRKIDESVRIIA   94 (129)
T ss_dssp             EEECCSSHHHHHHHHHHHHHHCSSSCEEE
T ss_pred             EEEeccchhhhHHHHHHHHHHCCCceEEE
Confidence            88865443333344445577788876665

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=95.64  E-value=0.013  Score=45.12  Aligned_cols=53  Identities=13%  Similarity=0.103  Sum_probs=43.5

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHhcCC
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGV   70 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~   70 (188)
                      ..+...++|||+..|..+..++...+. ..+|+++|++|..+...++++..++.
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~  263 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD  263 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence            345568999999999999888776542 36999999999999999999886543

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=95.60  E-value=0.0092  Score=42.45  Aligned_cols=51  Identities=16%  Similarity=0.241  Sum_probs=39.2

Q ss_pred             EEEEcchHHHHHHHhhcccCCCceeEEEEeCCc-------------cc----hHHHHHHHHhccCcCeEEEEe
Q 029764           75 NFIESEALSVLDQLLKYSENEGSFDYAFVDADK-------------DN----YCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        75 ~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~-------------~~----~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      +++++|+.+.+..+.     .+++|+|+.|.+.             ..    ....++++.++|+++|.+++.
T Consensus         6 ~i~~gDcle~l~~lp-----d~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~   73 (256)
T d1g60a_           6 KIHQMNCFDFLDQVE-----NKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF   73 (256)
T ss_dssp             SEEECCHHHHHHHSC-----TTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEeccHHHHHhhCc-----CCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccc
Confidence            478999999998874     5789999999532             11    234667788999999988764

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=95.55  E-value=0.063  Score=35.83  Aligned_cols=96  Identities=10%  Similarity=0.052  Sum_probs=60.7

Q ss_pred             CEEEEEcccchHHHHH--HHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCC-C-CcEE----EEEcchHHHHHHHhhccc
Q 029764           22 KKTIEIGVFTGYSLLL--TALTIPEDGQITAIDVNRETYEIGLPIIKKAGV-D-HKIN----FIESEALSVLDQLLKYSE   93 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~--la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~-~-~~~~----~~~~d~~~~~~~~~~~~~   93 (188)
                      ++|-=||+|.-..++.  |++.   +..|+.+|.+++.++..++.-..... . ....    ....|..+.   +     
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~---G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~-----   70 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALK---GQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA---V-----   70 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH---H-----
T ss_pred             CEEEEECccHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhH---h-----
Confidence            5677788865543333  3332   67999999999887776654211100 0 0111    112232222   1     


Q ss_pred             CCCceeEEEEeCCccchHHHHHHHHhccCcCeEEEEe
Q 029764           94 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        94 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                        ...|+|++..........++++.++++++..+++.
T Consensus        71 --~~aD~iii~v~~~~~~~~~~~i~~~l~~~~~iv~~  105 (184)
T d1bg6a2          71 --KDADVILIVVPAIHHASIAANIASYISEGQLIILN  105 (184)
T ss_dssp             --TTCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             --cCCCEEEEEEchhHHHHHHHHhhhccCCCCEEEEe
Confidence              57899999877777788999999999999987754

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=95.52  E-value=0.016  Score=41.59  Aligned_cols=107  Identities=10%  Similarity=0.035  Sum_probs=73.6

Q ss_pred             CCCEEEEEcccchHHHHHHHhhC---CC------------------------------------CCEEEEEeCCchhHHH
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTI---PE------------------------------------DGQITAIDVNRETYEI   60 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~---~~------------------------------------~~~v~~iD~~~~~~~~   60 (188)
                      .+..++|--||+|...+..|...   ++                                    ..++++.|.++++++.
T Consensus        50 ~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~  129 (249)
T d1o9ga_          50 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  129 (249)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHH
Confidence            34579999999999888765422   10                                    1246778888888888


Q ss_pred             H---HHHHHhcCCCCcEEEEEcchHHHH--HHHhhcccCCCceeEEEEeCCc------------cchHHHHHHHHhccCc
Q 029764           61 G---LPIIKKAGVDHKINFIESEALSVL--DQLLKYSENEGSFDYAFVDADK------------DNYCNYHERLMKLLKV  123 (188)
Q Consensus        61 a---~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~D~i~id~~~------------~~~~~~~~~~~~~L~~  123 (188)
                      |   ++|++..|+...+++.+.|..+..  ..+.    ....+++|+++.+.            +.+..+...+.+.+..
T Consensus       130 A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~----~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~  205 (249)
T d1o9ga_         130 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVL----AGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPA  205 (249)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHH----TTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCT
T ss_pred             HHHHHHHHHHcCCCceeeeeecchhccCcchhcc----CCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCC
Confidence            8   568889999988999999875421  2221    13578999998421            2245566667777877


Q ss_pred             CeEEEEe
Q 029764          124 GGIAVYD  130 (188)
Q Consensus       124 gG~lv~~  130 (188)
                      ...+++.
T Consensus       206 ~s~~~it  212 (249)
T d1o9ga_         206 HAVIAVT  212 (249)
T ss_dssp             TCEEEEE
T ss_pred             CcEEEEe
Confidence            7766664

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.46  E-value=0.0084  Score=43.24  Aligned_cols=52  Identities=15%  Similarity=0.172  Sum_probs=40.2

Q ss_pred             EEEEEcchHHHHHHHhhcccCCCceeEEEEeCCc----------cch----HHHHHHHHhccCcCeEEEEe
Q 029764           74 INFIESEALSVLDQLLKYSENEGSFDYAFVDADK----------DNY----CNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        74 ~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~----------~~~----~~~~~~~~~~L~~gG~lv~~  130 (188)
                      --++.+|+.+.+..+.     ++++|+||.|.+.          ..+    ...++++.++|+++|.+++.
T Consensus         5 ~~~~~~D~le~l~~l~-----d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~   70 (279)
T d1eg2a_           5 HVYDVCDCLDTLAKLP-----DDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF   70 (279)
T ss_dssp             EEEEECCHHHHHHTSC-----TTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceEEechHHHHHhhCc-----CCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEe
Confidence            3578899999998873     5899999999642          122    45567788999999988874

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.12  E-value=0.023  Score=38.49  Aligned_cols=98  Identities=9%  Similarity=0.050  Sum_probs=60.2

Q ss_pred             CCCEEEEEccc--chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           20 NAKKTIEIGVF--TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        20 ~~~~vLeiG~g--~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      ++.+||-.|.+  .|..++.+|+..  +.+|+++--+++..+.+++.    |...-+. ...+..+.....     ..+.
T Consensus        31 ~g~~VLI~gaaGGVG~~aiQlak~~--Ga~Viat~~s~~k~~~~~~l----Ga~~vi~-~~~~~~~~~~~~-----~~~g   98 (176)
T d1xa0a2          31 ERGPVLVTGATGGVGSLAVSMLAKR--GYTVEASTGKAAEHDYLRVL----GAKEVLA-REDVMAERIRPL-----DKQR   98 (176)
T ss_dssp             GGCCEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCTTCHHHHHHT----TCSEEEE-CC---------C-----CSCC
T ss_pred             CCCEEEEEeccchHHHHHHHHHHHc--CCceEEecCchHHHHHHHhc----ccceeee-cchhHHHHHHHh-----hccC
Confidence            45679988854  556778888875  78999999888887777653    4332121 111111111111     2568


Q ss_pred             eeEEEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           98 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        98 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      +|+|+=...    ...++...+.|++||.++.....
T Consensus        99 vD~vid~vg----g~~~~~~l~~l~~~Griv~~G~~  130 (176)
T d1xa0a2          99 WAAAVDPVG----GRTLATVLSRMRYGGAVAVSGLT  130 (176)
T ss_dssp             EEEEEECST----TTTHHHHHHTEEEEEEEEECSCC
T ss_pred             cCEEEEcCC----chhHHHHHHHhCCCceEEEeecc
Confidence            997664322    22478888999999999986544

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=94.82  E-value=0.03  Score=42.38  Aligned_cols=45  Identities=13%  Similarity=0.147  Sum_probs=34.7

Q ss_pred             CEEEEEcccchHHHHHHHhhCC------CCCEEEEEeCCchhHHHHHHHHH
Q 029764           22 KKTIEIGVFTGYSLLLTALTIP------EDGQITAIDVNRETYEIGLPIIK   66 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~------~~~~v~~iD~~~~~~~~a~~~~~   66 (188)
                      .+|+|+|+|.|..+..++..+.      ...+++.+|.++...+.-++.+.
T Consensus        81 ~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~  131 (365)
T d1zkda1          81 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA  131 (365)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred             ceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc
Confidence            4799999999999888776543      24579999999987666665544

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=94.79  E-value=0.079  Score=34.54  Aligned_cols=97  Identities=15%  Similarity=0.048  Sum_probs=59.1

Q ss_pred             CEEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCce
Q 029764           22 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSF   98 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~   98 (188)
                      .+|+=+|+  |..+..+++.+. .+..++.+|.+++......+....    ..+.++.||+.+  .+...     .-...
T Consensus         4 nHiII~G~--g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~----~~~~vi~Gd~~d~~~L~~a-----~i~~a   72 (153)
T d1id1a_           4 DHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG----DNADVIPGDSNDSSVLKKA-----GIDRC   72 (153)
T ss_dssp             SCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC----TTCEEEESCTTSHHHHHHH-----TTTTC
T ss_pred             CEEEEECC--CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc----CCcEEEEccCcchHHHHHh-----ccccC
Confidence            35777666  666666666542 257899999998765444333322    347889999765  34443     24678


Q ss_pred             eEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764           99 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      |.+++..+.....-..-...+.+.|...++.
T Consensus        73 ~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia  103 (153)
T d1id1a_          73 RAILALSDNDADNAFVVLSAKDMSSDVKTVL  103 (153)
T ss_dssp             SEEEECSSCHHHHHHHHHHHHHHTSSSCEEE
T ss_pred             CEEEEccccHHHHHHHHHHHHHhCCCCceEE
Confidence            8898865443333333344566677766665

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=94.72  E-value=0.019  Score=41.99  Aligned_cols=53  Identities=19%  Similarity=0.267  Sum_probs=40.7

Q ss_pred             cEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCc-------------cc----hHHHHHHHHhccCcCeEEEEe
Q 029764           73 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-------------DN----YCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        73 ~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~-------------~~----~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      +-.+++||..+.+..+.     .+++|+|+.|.+.             .+    ..+.+..+.++|+++|.++++
T Consensus        12 ~~~l~~GD~le~l~~l~-----~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~   81 (320)
T d1booa_          12 NGSMYIGDSLELLESFP-----EESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD   81 (320)
T ss_dssp             SEEEEESCHHHHGGGSC-----SSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCEEEehhHHHHHhhCc-----cCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCccccc
Confidence            34789999999888863     5799999999532             01    234577788999999998874

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.45  E-value=0.022  Score=42.22  Aligned_cols=73  Identities=15%  Similarity=0.076  Sum_probs=49.0

Q ss_pred             CCEEEEEcccchHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764           21 AKKTIEIGVFTGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   99 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   99 (188)
                      |.+|+|+.||.|..+..+-.+-- .. -+.++|+++.+++..+.|+.      ...++.+|..++......    ...+|
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~-~~~~~~a~E~~~~a~~~~~~n~~------~~~~~~~di~~~~~~~~~----~~~~D   70 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCI-PAQVVAAIDVNTVANEVYKYNFP------HTQLLAKTIEGITLEEFD----RLSFD   70 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTC-SEEEEEEECCCHHHHHHHHHHCT------TSCEECSCGGGCCHHHHH----HHCCS
T ss_pred             CCEEEEcCcCccHHHHHHHHcCC-CCeEEEEEECCHHHHHHHHHHCC------CCCcccCchhhCCHhHcC----CCCcc
Confidence            56899999999998877755411 22 36789999998888887752      244567777654222211    14689


Q ss_pred             EEEEe
Q 029764          100 YAFVD  104 (188)
Q Consensus       100 ~i~id  104 (188)
                      +++..
T Consensus        71 ll~gg   75 (343)
T d1g55a_          71 MILMS   75 (343)
T ss_dssp             EEEEC
T ss_pred             EEEee
Confidence            99865

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=94.02  E-value=0.053  Score=39.59  Aligned_cols=66  Identities=11%  Similarity=-0.067  Sum_probs=47.9

Q ss_pred             EEEEEcccchHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029764           23 KTIEIGVFTGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  101 (188)
Q Consensus        23 ~vLeiG~g~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i  101 (188)
                      +|+|+.||.|..+.-+-.+   +. .+.++|+++.+.+..+.|+     +  -.++.+|..++-..      +....|++
T Consensus         2 k~~~lF~G~Gg~~~gl~~a---G~~~~~a~e~d~~a~~~~~~N~-----~--~~~~~~Di~~~~~~------~~~~~dll   65 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKA---GFRIICANEYDKSIWKTYESNH-----S--AKLIKGDISKISSD------EFPKCDGI   65 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHH---TCEEEEEEECCHHHHHHHHHHC-----C--SEEEESCTTTSCGG------GSCCCSEE
T ss_pred             eEEEeCcCcCHHHHHHHHC---CCEEEEEEeCCHHHHHHHHHHC-----C--CCCccCChhhCCHh------HcccccEE
Confidence            6999999999988877664   33 4669999998888877774     2  24567887664222      13678999


Q ss_pred             EEe
Q 029764          102 FVD  104 (188)
Q Consensus       102 ~id  104 (188)
                      +..
T Consensus        66 ~~g   68 (324)
T d1dcta_          66 IGG   68 (324)
T ss_dssp             EEC
T ss_pred             eec
Confidence            865

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.95  E-value=0.35  Score=34.51  Aligned_cols=105  Identities=15%  Similarity=0.079  Sum_probs=64.9

Q ss_pred             CCEE-EEEcccchHHHHHHHhhCC--CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHHhhc
Q 029764           21 AKKT-IEIGVFTGYSLLLTALTIP--EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKY   91 (188)
Q Consensus        21 ~~~v-LeiG~g~G~~~~~la~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~   91 (188)
                      +++| |-.|+. +..+..+|+.+.  .+.+|+.++.+++..+.+.+.++..+  .++.++..|..+      ......++
T Consensus         2 g~rVAlVTGas-~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dvs~~~sv~~~~~~~~~~   78 (275)
T d1wmaa1           2 GIHVALVTGGN-KGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKE   78 (275)
T ss_dssp             CCCEEEESSCS-SHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCC-CHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEEecCCHHHHHHHHHHHHHh
Confidence            4566 444544 444444444331  25799999999999998888887765  357788887643      12222222


Q ss_pred             ccCCCceeEEEEeCCcc-----------ch-----------HHHHHHHHhccCcCeEEEEec
Q 029764           92 SENEGSFDYAFVDADKD-----------NY-----------CNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus        92 ~~~~~~~D~i~id~~~~-----------~~-----------~~~~~~~~~~L~~gG~lv~~~  131 (188)
                         .+.+|+++..+...           ..           ....+.+.++|+++|.++.-.
T Consensus        79 ---~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis  137 (275)
T d1wmaa1          79 ---YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS  137 (275)
T ss_dssp             ---HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             ---cCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence               47899998764210           00           123445568889999877643

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=93.82  E-value=0.044  Score=34.89  Aligned_cols=92  Identities=15%  Similarity=0.045  Sum_probs=54.0

Q ss_pred             EEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCcee
Q 029764           23 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSFD   99 (188)
Q Consensus        23 ~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~D   99 (188)
                      +++=+|+  |..+..+++.+. .+..|+.+|.+++.++.+++    .+    ...+.+|+.+  .+...     .....|
T Consensus         2 ~~iIiG~--G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~----~~----~~~~~gd~~~~~~l~~a-----~i~~a~   66 (134)
T d2hmva1           2 QFAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS----YA----THAVIANATEENELLSL-----GIRNFE   66 (134)
T ss_dssp             CEEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTT----TC----SEEEECCTTCTTHHHHH-----TGGGCS
T ss_pred             EEEEECC--CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHH----hC----Ccceeeecccchhhhcc-----CCcccc
Confidence            4566655  677777776553 36789999999998776542    12    3456777654  44433     135688


Q ss_pred             EEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764          100 YAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus       100 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      .+++..........+-.....+.+...++.
T Consensus        67 ~vi~~~~~~~~~~~~~~~~~~~~~~~~iia   96 (134)
T d2hmva1          67 YVIVAIGANIQASTLTTLLLKELDIPNIWV   96 (134)
T ss_dssp             EEEECCCSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             EEEEEcCchHHhHHHHHHHHHHcCCCcEEe
Confidence            888765433333333333344445555554

>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: LPG1296-like
domain: Uncharacterized protein LPG1296
species: Legionella pneumophila [TaxId: 446]

Probab=93.62  E-value=0.14  Score=36.87  Aligned_cols=112  Identities=12%  Similarity=0.140  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029764            8 AGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   87 (188)
Q Consensus         8 ~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   87 (188)
                      ...++..+...++.. -+..-+|+-..+..+++   +.-+++.+|..|+-....++++..   ..++.+...|..+.+..
T Consensus        71 ~~~yl~~v~~~n~~~-~l~~YPGSP~ia~~llR---~~Drl~l~ELHp~e~~~L~~~~~~---~~~~~v~~~DG~~~l~a  143 (271)
T d2oo3a1          71 FLEYISVIKQINLNS-TLSYYPGSPYFAINQLR---SQDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNA  143 (271)
T ss_dssp             GHHHHHHHHHHSSSS-SCCEEECHHHHHHHHSC---TTSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHH
T ss_pred             HHHHHHHHHHhCCCC-CcCcCCCCHHHHHHhCC---CCCceEEeecCHHHHHHHHHHhcc---CCCceEEcCchHHHHHh
Confidence            445555555554433 23556666666555554   377999999999998888876543   35799999999997776


Q ss_pred             HhhcccCCCceeEEEEeCCc---cchHHHHHHHHhccC--cCeEEEE
Q 029764           88 LLKYSENEGSFDYAFVDADK---DNYCNYHERLMKLLK--VGGIAVY  129 (188)
Q Consensus        88 ~~~~~~~~~~~D~i~id~~~---~~~~~~~~~~~~~L~--~gG~lv~  129 (188)
                      +...   ...=-+|+||.+.   .++....+.+...++  +.|++++
T Consensus       144 llPP---~~rRgLVLIDPpYE~k~ey~~v~~~l~~a~kr~~~g~~~i  187 (271)
T d2oo3a1         144 LLPP---PEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCV  187 (271)
T ss_dssp             HCSC---TTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred             hCCC---CCCceEEEecCCcCCHHHHHHHHHHHHHHHHhCCCceEEE
Confidence            5422   3455699999753   445555555544444  4555554

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=93.48  E-value=0.45  Score=29.33  Aligned_cols=78  Identities=18%  Similarity=0.141  Sum_probs=52.7

Q ss_pred             CCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCcc--chHHHHHHHHhccC
Q 029764           45 DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLK  122 (188)
Q Consensus        45 ~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~--~~~~~~~~~~~~L~  122 (188)
                      +.+|..+|-++...+..++.++..|+.  +.....+..+.+..+.     ...||+|++|...+  +-.++++++.+. .
T Consensus         1 GkrILivDD~~~~~~~l~~~L~~~g~~--v~~~a~~~~~al~~~~-----~~~~dliilD~~mp~~~G~e~~~~ir~~-~   72 (118)
T d1u0sy_           1 GKRVLIVDDAAFMRMMLKDIITKAGYE--VAGEATNGREAVEKYK-----ELKPDIVTMDITMPEMNGIDAIKEIMKI-D   72 (118)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCE--EEEEESSHHHHHHHHH-----HHCCSEEEEECSCGGGCHHHHHHHHHHH-C
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCCc--eEEEECCHHHHHHHHH-----hccCCEEEEecCCCCCCHHHHHHHHHHh-C
Confidence            358999999999999999999988752  3334567766665553     25799999997543  345666666543 3


Q ss_pred             cCe-EEEEe
Q 029764          123 VGG-IAVYD  130 (188)
Q Consensus       123 ~gG-~lv~~  130 (188)
                      +.- ++++.
T Consensus        73 ~~~pvi~ls   81 (118)
T d1u0sy_          73 PNAKIIVCS   81 (118)
T ss_dssp             TTCCEEEEE
T ss_pred             CCCcEEEEE
Confidence            443 44443

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=93.23  E-value=0.11  Score=38.03  Aligned_cols=68  Identities=10%  Similarity=-0.042  Sum_probs=49.3

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCCCCC-EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .+.+|||+.||.|..+..+-+.   +. .+.++|+++.+++..+.|+..        ..++|..++...      ....+
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~a---G~~~v~a~e~d~~a~~~~~~N~~~--------~~~~Di~~~~~~------~~~~~   72 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESC---GAECVYSNEWDKYAQEVYEMNFGE--------KPEGDITQVNEK------TIPDH   72 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHT---TCEEEEEECCCHHHHHHHHHHHSC--------CCBSCGGGSCGG------GSCCC
T ss_pred             CCCeEEEECccccHHHHHHHHC---CCeEEEEEeCCHHHHHHHHHHCCC--------CCcCchhcCchh------hccee
Confidence            4579999999999998887664   33 466799999999999888732        124676554222      13678


Q ss_pred             eEEEEe
Q 029764           99 DYAFVD  104 (188)
Q Consensus        99 D~i~id  104 (188)
                      |+++..
T Consensus        73 Dll~gg   78 (327)
T d2c7pa1          73 DILCAG   78 (327)
T ss_dssp             SEEEEE
T ss_pred             eeeecc
Confidence            999876

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=93.13  E-value=0.59  Score=33.05  Aligned_cols=79  Identities=14%  Similarity=0.159  Sum_probs=54.0

Q ss_pred             CCCEEEEEcccchH---HHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHHhh
Q 029764           20 NAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLK   90 (188)
Q Consensus        20 ~~~~vLeiG~g~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~   90 (188)
                      +++.+|-.|++.|-   .+..|++.   +.+|+.+|.+++.++.+.+.+...+...++..+..|..+      .+....+
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~---Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~   79 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAE---GAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTE   79 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHH
Confidence            56888988987663   34445543   789999999999998888777665545567788877532      2222222


Q ss_pred             cccCCCceeEEEEe
Q 029764           91 YSENEGSFDYAFVD  104 (188)
Q Consensus        91 ~~~~~~~~D~i~id  104 (188)
                      .   .+..|+++-.
T Consensus        80 ~---~G~iDiLVnn   90 (258)
T d1iy8a_          80 R---FGRIDGFFNN   90 (258)
T ss_dssp             H---HSCCSEEEEC
T ss_pred             H---hCCCCEEEEC
Confidence            2   4789998865

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.50  E-value=0.47  Score=33.46  Aligned_cols=85  Identities=18%  Similarity=0.165  Sum_probs=53.2

Q ss_pred             CCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcc-cCC
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-ENE   95 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~-~~~   95 (188)
                      ++|.+|-.|++.|- +..+|+.+ ..+.+|+.+|.+++.++.+.+.+.......++.++..|..+.  +..+.+.. ...
T Consensus         2 ~GKvalITGas~GI-G~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (254)
T d2gdza1           2 NGKVALVTGAAQGI-GRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   80 (254)
T ss_dssp             TTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            56888988876653 33333333 237899999999998888777765543335688888875431  12211110 114


Q ss_pred             CceeEEEEeC
Q 029764           96 GSFDYAFVDA  105 (188)
Q Consensus        96 ~~~D~i~id~  105 (188)
                      +.+|+++-.+
T Consensus        81 G~iDilVnnA   90 (254)
T d2gdza1          81 GRLDILVNNA   90 (254)
T ss_dssp             SCCCEEEECC
T ss_pred             CCcCeecccc
Confidence            7899988764

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=92.45  E-value=0.64  Score=32.84  Aligned_cols=78  Identities=22%  Similarity=0.291  Sum_probs=53.7

Q ss_pred             cCCCEEEEEcccchH---HHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHHh
Q 029764           19 VNAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLL   89 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~   89 (188)
                      .+++.+|-.|.+.|-   .+..|++.   +.+|+.+|.+++.++.+.+.+...+  .++..+..|..+      .+....
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~---Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~   77 (260)
T d1zema1           3 FNGKVCLVTGAGGNIGLATALRLAEE---GTAIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVV   77 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHH
Confidence            467889988876653   33444443   7899999999999998888887765  357778877542      222222


Q ss_pred             hcccCCCceeEEEEe
Q 029764           90 KYSENEGSFDYAFVD  104 (188)
Q Consensus        90 ~~~~~~~~~D~i~id  104 (188)
                      +.   .+..|+++..
T Consensus        78 ~~---~g~iDilVnn   89 (260)
T d1zema1          78 RD---FGKIDFLFNN   89 (260)
T ss_dssp             HH---HSCCCEEEEC
T ss_pred             HH---hCCCCeehhh
Confidence            22   4789998865

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.36  E-value=1.2  Score=31.17  Aligned_cols=82  Identities=16%  Similarity=0.122  Sum_probs=55.1

Q ss_pred             cCCCEEEEEcccchH---HHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcc-
Q 029764           19 VNAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-   92 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~-   92 (188)
                      ..++.+|-.|++.|-   .+..+++.   +.+|+.+|.+++.++...+.+...+  .++..+..|..+.  ...+.+.. 
T Consensus         5 l~Gkv~lITGas~GIG~~ia~~la~~---G~~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~   79 (244)
T d1yb1a_           5 VTGEIVLITGAGHGIGRLTAYEFAKL---KSKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVK   79 (244)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHH
Confidence            356788888887763   34445543   7899999999999988888887765  4678888876432  22222110 


Q ss_pred             cCCCceeEEEEeC
Q 029764           93 ENEGSFDYAFVDA  105 (188)
Q Consensus        93 ~~~~~~D~i~id~  105 (188)
                      ...+..|+++..+
T Consensus        80 ~~~g~idilinna   92 (244)
T d1yb1a_          80 AEIGDVSILVNNA   92 (244)
T ss_dssp             HHTCCCSEEEECC
T ss_pred             HHcCCCceeEeec
Confidence            1257899988663

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=92.36  E-value=0.085  Score=35.21  Aligned_cols=97  Identities=16%  Similarity=0.103  Sum_probs=61.1

Q ss_pred             CCEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           21 AKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        21 ~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      +.+||--|.  |.|..++.+|+.+  +++|+++.-+++..+.+++.    |..   ..+..  .+...+.... ...+.+
T Consensus        24 ~~~VLV~gaaGgVG~~avQlAk~~--Ga~Viat~~s~~k~~~~~~l----Gad---~vi~~--~~~~~~~~~~-~~~~gv   91 (167)
T d1tt7a2          24 KGSVLVTGATGGVGGIAVSMLNKR--GYDVVASTGNREAADYLKQL----GAS---EVISR--EDVYDGTLKA-LSKQQW   91 (167)
T ss_dssp             GCCEEEESTTSHHHHHHHHHHHHH--TCCEEEEESSSSTHHHHHHH----TCS---EEEEH--HHHCSSCCCS-SCCCCE
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHc--CCceEEEecCHHHHHHHHhh----ccc---ceEec--cchhchhhhc-ccCCCc
Confidence            446887774  5667888899986  68999999998887766653    432   12221  1211110000 124579


Q ss_pred             eEEEEeCCccchHHHHHHHHhccCcCeEEEEeccc
Q 029764           99 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  133 (188)
Q Consensus        99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  133 (188)
                      |+|+-...    ...++...+.|+++|.+++-...
T Consensus        92 d~vid~vg----g~~~~~~~~~l~~~G~iv~~G~~  122 (167)
T d1tt7a2          92 QGAVDPVG----GKQLASLLSKIQYGGSVAVSGLT  122 (167)
T ss_dssp             EEEEESCC----THHHHHHHTTEEEEEEEEECCCS
T ss_pred             eEEEecCc----HHHHHHHHHHhccCceEEEeecc
Confidence            98775422    23567889999999999986544

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.33  E-value=0.63  Score=32.94  Aligned_cols=82  Identities=23%  Similarity=0.236  Sum_probs=54.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCC-CcEEEEEcchHH------HHHHHhh
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALS------VLDQLLK   90 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~------~~~~~~~   90 (188)
                      .++|.+|-.|++.|- +..+|+.+ ..+.+|+.++.+++.++.+.+.+...+.. .++.++..|..+      .+....+
T Consensus         3 l~gKvalVTGas~GI-G~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~   81 (264)
T d1spxa_           3 FAEKVAIITGSSNGI-GRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG   81 (264)
T ss_dssp             TTTCEEEETTTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence            357788888876553 33333332 23789999999999999888888877654 468888887642      2222222


Q ss_pred             cccCCCceeEEEEe
Q 029764           91 YSENEGSFDYAFVD  104 (188)
Q Consensus        91 ~~~~~~~~D~i~id  104 (188)
                      .   .+..|+++-.
T Consensus        82 ~---~g~iDilvnn   92 (264)
T d1spxa_          82 K---FGKLDILVNN   92 (264)
T ss_dssp             H---HSCCCEEEEC
T ss_pred             H---hCCCCEeecc
Confidence            2   4789988765

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.26  E-value=0.56  Score=33.45  Aligned_cols=81  Identities=26%  Similarity=0.277  Sum_probs=54.8

Q ss_pred             CCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCC-CcEEEEEcchHH------HHHHHhhc
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALS------VLDQLLKY   91 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~------~~~~~~~~   91 (188)
                      +++++|-.|++.|- +..+|+.+ ..+.+|+.+|.+++.++.+.+.+...+.. .++..+..|..+      .+....+.
T Consensus         3 ~gK~alITGas~GI-G~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (274)
T d1xhla_           3 SGKSVIITGSSNGI-GRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK   81 (274)
T ss_dssp             TTCEEEETTCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            57888888887663 33333322 13789999999999999888888877654 468888887543      22222211


Q ss_pred             ccCCCceeEEEEe
Q 029764           92 SENEGSFDYAFVD  104 (188)
Q Consensus        92 ~~~~~~~D~i~id  104 (188)
                         .+..|+++..
T Consensus        82 ---~G~iDilVnn   91 (274)
T d1xhla_          82 ---FGKIDILVNN   91 (274)
T ss_dssp             ---HSCCCEEEEC
T ss_pred             ---cCCceEEEee
Confidence               4689999865

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.25  E-value=0.53  Score=33.54  Aligned_cols=80  Identities=24%  Similarity=0.316  Sum_probs=54.8

Q ss_pred             cCCCEEEEEcccchH---HHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCC-CcEEEEEcchHH------HHHHH
Q 029764           19 VNAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALS------VLDQL   88 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~------~~~~~   88 (188)
                      .+++++|-.|++.|-   .+..|++.   +.+|+.++.+++.++.+.+.+.+.+.. .++..+..|..+      .+...
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~---Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~   79 (272)
T d1xkqa_           3 FSNKTVIITGSSNGIGRTTAILFAQE---GANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINST   79 (272)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCcHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHH
Confidence            356888888876652   33334443   789999999999999998888877654 468888887543      22222


Q ss_pred             hhcccCCCceeEEEEe
Q 029764           89 LKYSENEGSFDYAFVD  104 (188)
Q Consensus        89 ~~~~~~~~~~D~i~id  104 (188)
                      .+.   .+..|+++..
T Consensus        80 ~~~---~g~iDilvnn   92 (272)
T d1xkqa_          80 LKQ---FGKIDVLVNN   92 (272)
T ss_dssp             HHH---HSCCCEEEEC
T ss_pred             HHH---hCCceEEEeC
Confidence            221   4789998865

>d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Hypothetical protein BH3024
species: Bacillus halodurans [TaxId: 86665]

Probab=92.06  E-value=0.76  Score=28.30  Aligned_cols=78  Identities=6%  Similarity=0.080  Sum_probs=53.3

Q ss_pred             CEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCcc--chHHHHHHHHhccCc
Q 029764           46 GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKV  123 (188)
Q Consensus        46 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~--~~~~~~~~~~~~L~~  123 (188)
                      .+|..||-++......++.++..|+  .+. ...+..+.+..+..    ...||+|++|...+  +-.++++.+.+.-+.
T Consensus         3 ~rILvVdDd~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~l~~----~~~~dliilD~~lp~~~G~el~~~ir~~~~~   75 (118)
T d2b4aa1           3 FRVTLVEDEPSHATLIQYHLNQLGA--EVT-VHPSGSAFFQHRSQ----LSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQ   75 (118)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHTGGG----GGSCSEEEEETTCTTSCHHHHHHHHTTSSSC
T ss_pred             CEEEEEECCHHHHHHHHHHHHhcCC--CeE-EECCHHHHHHHHHh----cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCC
Confidence            5899999999999999999999885  233 34566665555432    25799999997543  345677777554333


Q ss_pred             CeEEEEe
Q 029764          124 GGIAVYD  130 (188)
Q Consensus       124 gG~lv~~  130 (188)
                      -.++++.
T Consensus        76 ~pii~lt   82 (118)
T d2b4aa1          76 PSVLILT   82 (118)
T ss_dssp             CEEEEEE
T ss_pred             CcEEEEE
Confidence            3556554

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.91  E-value=1.1  Score=29.69  Aligned_cols=91  Identities=11%  Similarity=0.109  Sum_probs=49.9

Q ss_pred             EEEEEcccc-hHHHHHHHhhCCCCCEEEEE-eCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029764           23 KTIEIGVFT-GYSLLLTALTIPEDGQITAI-DVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  100 (188)
Q Consensus        23 ~vLeiG~g~-G~~~~~la~~~~~~~~v~~i-D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~  100 (188)
                      +|.=||||. |..-+......+ +.+++++ |.+++..+..   .+..+......+ ..|..+.+.        ....|+
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~-~~~i~ai~d~~~~~~~~~---~~~~~~~~~~~~-~~~~~~ll~--------~~~iD~   69 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAP-NATISGVASRSLEKAKAF---ATANNYPESTKI-HGSYESLLE--------DPEIDA   69 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCT-TEEEEEEECSSHHHHHHH---HHHTTCCTTCEE-ESSHHHHHH--------CTTCCE
T ss_pred             EEEEEcCCHHHHHHHHHHHhCC-CCEEEEEEeCCccccccc---hhccccccceee-cCcHHHhhh--------ccccce
Confidence            577799974 443333444444 6788865 7877654433   344455444443 455555543        367999


Q ss_pred             EEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764          101 AFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus       101 i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      |++..+.....+.   +...|+.|=-+++
T Consensus        70 v~I~tp~~~h~~~---~~~~l~~g~~v~~   95 (184)
T d1ydwa1          70 LYVPLPTSLHVEW---AIKAAEKGKHILL   95 (184)
T ss_dssp             EEECCCGGGHHHH---HHHHHTTTCEEEE
T ss_pred             eeecccchhhcch---hhhhhhccceeec
Confidence            9987654433333   3334444433333

>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator Sin1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.85  E-value=0.71  Score=28.87  Aligned_cols=83  Identities=12%  Similarity=0.230  Sum_probs=51.7

Q ss_pred             CEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCcc--chHHHHHHHHhccCc
Q 029764           46 GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKV  123 (188)
Q Consensus        46 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~--~~~~~~~~~~~~L~~  123 (188)
                      .+|..+|-++...+..++.++..|+. .++ ...|..+.+..+.........||+|++|...+  +-.+..+.+.+...+
T Consensus         2 irVLvVDD~~~~~~~l~~~L~~~g~~-~v~-~a~~g~eAl~~l~~~~~~~~~~dlillD~~mP~~dG~el~~~ir~~~~~   79 (128)
T d2r25b1           2 VKILVVEDNHVNQEVIKRMLNLEGIE-NIE-LACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGY   79 (128)
T ss_dssp             SCEEEECSCHHHHHHHHHHHHHTTCC-CEE-EESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSCC
T ss_pred             eEEEEEeCCHHHHHHHHHHHHHcCCe-EEE-EEcChHHHHHHHHhhhhccCCCCEEEEEeCCCCCCHHHHHHHHHHccCC
Confidence            37889999999999999999998864 244 34555544333211000147899999996443  345566666544444


Q ss_pred             Ce-EEEEe
Q 029764          124 GG-IAVYD  130 (188)
Q Consensus       124 gG-~lv~~  130 (188)
                      .- ++++.
T Consensus        80 ~~piI~lT   87 (128)
T d2r25b1          80 TSPIVALT   87 (128)
T ss_dssp             CSCEEEEE
T ss_pred             CCeEEEEE
Confidence            44 34443

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=91.54  E-value=0.26  Score=33.02  Aligned_cols=92  Identities=13%  Similarity=0.146  Sum_probs=59.2

Q ss_pred             CEEEEEcc--cchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029764           22 KKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   99 (188)
Q Consensus        22 ~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   99 (188)
                      .+||-.|.  |.|..++.+|+.+  +.+++++.-+++..+.+++.    |.   -.++.-+..+....+     ....+|
T Consensus        33 ~~vlV~gasGGVG~~aiQlAk~~--Ga~Via~~~~~~k~~~~~~l----Ga---d~vi~~~~~~~~~~l-----~~~~~~   98 (177)
T d1o89a2          33 GEIVVTGASGGVGSTAVALLHKL--GYQVVAVSGRESTHEYLKSL----GA---SRVLPRDEFAESRPL-----EKQVWA   98 (177)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCGGGHHHHHHH----TE---EEEEEGGGSSSCCSS-----CCCCEE
T ss_pred             CcEEEEEccccchHHHHHHHHHc--CCCeEEEecchhHHHHHHhh----cc---ccccccccHHHHHHH-----HhhcCC
Confidence            47776664  3567888899986  68999999999887766653    32   123332221111111     235678


Q ss_pred             EEEEeCCccchHHHHHHHHhccCcCeEEEEec
Q 029764          100 YAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  131 (188)
Q Consensus       100 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  131 (188)
                      .+ +|..-   .+.++..++.|+++|.++...
T Consensus        99 ~v-vD~Vg---g~~~~~~l~~l~~~Griv~~G  126 (177)
T d1o89a2          99 GA-IDTVG---DKVLAKVLAQMNYGGCVAACG  126 (177)
T ss_dssp             EE-EESSC---HHHHHHHHHTEEEEEEEEECC
T ss_pred             ee-EEEcc---hHHHHHHHHHhccccceEeec
Confidence            76 46533   346788999999999999854

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=91.37  E-value=1.6  Score=30.55  Aligned_cols=79  Identities=14%  Similarity=0.139  Sum_probs=54.1

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHHhhcc
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKYS   92 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~~   92 (188)
                      ..+.+|-.|.+.| .+..+|+.+. .+.+|+.++.+++.++.+.+.++..+  .++.++..|..+      .+....+  
T Consensus         9 enKvalITGas~G-IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~--   83 (251)
T d2c07a1           9 ENKVALVTGAGRG-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKILT--   83 (251)
T ss_dssp             SSCEEEEESTTSH-HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHH--
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHH--
Confidence            5677888887655 5555555442 36799999999999988888887665  357788887643      2222222  


Q ss_pred             cCCCceeEEEEe
Q 029764           93 ENEGSFDYAFVD  104 (188)
Q Consensus        93 ~~~~~~D~i~id  104 (188)
                       ..+.+|+++..
T Consensus        84 -~~g~iDilvnn   94 (251)
T d2c07a1          84 -EHKNVDILVNN   94 (251)
T ss_dssp             -HCSCCCEEEEC
T ss_pred             -hcCCceeeeec
Confidence             25789988865

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.96  E-value=2.1  Score=31.34  Aligned_cols=119  Identities=13%  Similarity=0.147  Sum_probs=64.6

Q ss_pred             HHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcC--------------------
Q 029764           10 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--------------------   69 (188)
Q Consensus        10 ~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--------------------   69 (188)
                      .++..++...+...|+-+|||.=.....+....+ +.+++=||. |+.++.=++.+.+.+                    
T Consensus        86 ~~v~~Fl~~~~~~QVV~LGaG~DTr~~Rl~~~~~-~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~  163 (328)
T d1rjda_          86 AAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFP-HLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLI  163 (328)
T ss_dssp             HHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCT-TEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEE
T ss_pred             HHHHHHHHHCCCcEEEEeCCccchHHHHhhccCC-CcEEEECCc-HHHHHHHHHHHHhchhhhhhccccccccccccccC
Confidence            3444555566667899999988877777766544 444444554 444332222232210                    


Q ss_pred             CCCcEEEEEcchHH--HHHHHhhcccCCCceeEEEEeC-----CccchHHHHHHHHhccCcCeEEEEe
Q 029764           70 VDHKINFIESEALS--VLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus        70 ~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      .+++..++..|..+  .+..+.+.+.+....-+++..+     .++...++++.+.+..+.+..++.+
T Consensus       164 ~s~~y~lv~~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~~~~~i~YE  231 (328)
T d1rjda_         164 DQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFSHGLWISYD  231 (328)
T ss_dssp             ECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSSEEEEEEE
T ss_pred             CCCCeEEEecCCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCCCceEEEec
Confidence            12457777788654  2333333211122223444443     3455677888887777665555543

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=90.96  E-value=0.66  Score=31.11  Aligned_cols=77  Identities=12%  Similarity=0.029  Sum_probs=47.6

Q ss_pred             cCCCEEEEEcccchH---HHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764           19 VNAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      .+++++|-.|.+.|-   .+..+++.   +.+|+.++.+++..+.+.+.+...........-..|..+. .+.      .
T Consensus        21 l~gK~vlItGasgGIG~~ia~~la~~---G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~------~   90 (191)
T d1luaa1          21 VKGKKAVVLAGTGPVGMRSAALLAGE---GAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASR-AEA------V   90 (191)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHH-HHH------T
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhh---ccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHH-HHH------h
Confidence            378899999965553   23334443   7899999999998888877766533111122223333333 333      3


Q ss_pred             CceeEEEEeC
Q 029764           96 GSFDYAFVDA  105 (188)
Q Consensus        96 ~~~D~i~id~  105 (188)
                      +..|+++...
T Consensus        91 ~~iDilin~A  100 (191)
T d1luaa1          91 KGAHFVFTAG  100 (191)
T ss_dssp             TTCSEEEECC
T ss_pred             cCcCeeeecC
Confidence            6789988764

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=90.87  E-value=1.4  Score=28.94  Aligned_cols=126  Identities=13%  Similarity=0.050  Sum_probs=71.0

Q ss_pred             EEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEE
Q 029764           25 IEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFV  103 (188)
Q Consensus        25 LeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~i  103 (188)
                      -=||+  |..+..+|+.+- .+.+|++.|.+++..+...+........+.... ..+...+...+       ...+.++.
T Consensus         5 GvIGl--G~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~~~~~   74 (178)
T d1pgja2           5 GVVGL--GVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKA-FETMEAFAASL-------KKPRKALI   74 (178)
T ss_dssp             EEECC--SHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEE-CSCHHHHHHHB-------CSSCEEEE
T ss_pred             EEEee--hHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhh-hhhhhHHHHhc-------ccceEEEE
Confidence            34555  666666665552 257899999999988777665433333333332 33333444332       33344443


Q ss_pred             e-CCccchHHHHHHHHhccCcCeEEEEeccccCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeEEEEeecCCc
Q 029764          104 D-ADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG  180 (188)
Q Consensus       104 d-~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~G  180 (188)
                      . .........+..+...+++|..++-.....                   ....+++.+.+... .+...-.|+..|
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~iii~~st~~-------------------~~~~~~~~~~l~~~-~~~~ldapv~g~  132 (178)
T d1pgja2          75 LVQAGAATDSTIEQLKKVFEKGDILVDTGNAH-------------------FKDQGRRAQQLEAA-GLRFLGMGISGG  132 (178)
T ss_dssp             CCCCSHHHHHHHHHHHHHCCTTCEEEECCCCC-------------------HHHHHHHHHHHHTT-TCEEEEEEEESH
T ss_pred             eecCcchhhhhhhhhhhhccccceecccCccc-------------------hhHHHHHHHHHhhc-ceeEecccccCC
Confidence            3 233444566778888999998776543331                   22255666666544 556666676544

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=90.82  E-value=0.86  Score=32.24  Aligned_cols=82  Identities=17%  Similarity=0.180  Sum_probs=51.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcc-cC
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYS-EN   94 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~-~~   94 (188)
                      .+++.+|-.|++.|- +..+|+.+ ..+.+|+.+|.+++.++.+.+.+..   ..++.++..|..+  .+..+.+.. ..
T Consensus         4 L~gKvalITGas~GI-G~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (268)
T d2bgka1           4 LQDKVAIITGGAGGI-GETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS---PDVISFVHCDVTKDEDVRNLVDTTIAK   79 (268)
T ss_dssp             TTTCEEEEESTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC---CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            467889999977663 33333333 2378999999999888777766643   3457778877542  122211110 11


Q ss_pred             CCceeEEEEe
Q 029764           95 EGSFDYAFVD  104 (188)
Q Consensus        95 ~~~~D~i~id  104 (188)
                      .+..|.++..
T Consensus        80 ~g~iD~lVnn   89 (268)
T d2bgka1          80 HGKLDIMFGN   89 (268)
T ss_dssp             HSCCCEEEEC
T ss_pred             cCCcceeccc
Confidence            4789999865

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=90.39  E-value=1  Score=31.62  Aligned_cols=83  Identities=18%  Similarity=0.196  Sum_probs=53.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcc-cC
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYS-EN   94 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~-~~   94 (188)
                      .+++.+|-.|.+.| .+..+|+.+ ..+.+|+.++.+++.++.+.+.++..+  .++.++..|..+  ....+.+.. ..
T Consensus         9 L~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dvs~~~~~~~~~~~~~~~   85 (255)
T d1fmca_           9 LDGKCAIITGAGAG-IGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISK   85 (255)
T ss_dssp             CTTCEEEETTTTSH-HHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            36788888887655 333333333 237899999999999988888888765  357778887643  122211110 11


Q ss_pred             CCceeEEEEe
Q 029764           95 EGSFDYAFVD  104 (188)
Q Consensus        95 ~~~~D~i~id  104 (188)
                      .+..|+++..
T Consensus        86 ~g~iDilvnn   95 (255)
T d1fmca_          86 LGKVDILVNN   95 (255)
T ss_dssp             HSSCCEEEEC
T ss_pred             cCCCCEeeeC
Confidence            4789988865

>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0F
species: Bacillus subtilis [TaxId: 1423]

Probab=90.08  E-value=1.2  Score=27.22  Aligned_cols=76  Identities=14%  Similarity=0.179  Sum_probs=51.6

Q ss_pred             CEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCcc--chHHHHHHHHhccCc
Q 029764           46 GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKV  123 (188)
Q Consensus        46 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~--~~~~~~~~~~~~L~~  123 (188)
                      .+|..||-++......++.++..|+.  + ....+..+.+..+.     ...||+|++|...+  +-.++++.+.+. .+
T Consensus         2 krILvVDD~~~~~~~l~~~L~~~g~~--v-~~a~~g~eal~~~~-----~~~~dlillD~~mP~~~G~el~~~lr~~-~~   72 (119)
T d1peya_           2 EKILIVDDQSGIRILLNEVFNKEGYQ--T-FQAANGLQALDIVT-----KERPDLVLLDMKIPGMDGIEILKRMKVI-DE   72 (119)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCE--E-EEESSHHHHHHHHH-----HHCCSEEEEESCCTTCCHHHHHHHHHHH-CT
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHcCCE--E-EEeCCHHHHHHHHH-----hCCCCEEEEeccCCCCCHHHHHHHHHHh-CC
Confidence            48999999999999999999988852  3 24566666555443     25799999996433  345667776543 34


Q ss_pred             Ce-EEEEe
Q 029764          124 GG-IAVYD  130 (188)
Q Consensus       124 gG-~lv~~  130 (188)
                      +- ++++.
T Consensus        73 ~~pvi~lt   80 (119)
T d1peya_          73 NIRVIIMT   80 (119)
T ss_dssp             TCEEEEEE
T ss_pred             CCcEEEEe
Confidence            43 44443

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=90.08  E-value=2  Score=32.36  Aligned_cols=124  Identities=15%  Similarity=0.135  Sum_probs=75.7

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeC-CchhHHHHHHHHHhcCCCCcEEEEEcchH
Q 029764            4 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDV-NRETYEIGLPIIKKAGVDHKINFIESEAL   82 (188)
Q Consensus         4 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~-~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   82 (188)
                      ..|.+..+=+.++.+..+...+-..+|.+..+..+...++++.+|++.+. -.......++.+.+.|+  .+.+....-.
T Consensus        57 ~nPT~~~LE~~la~LEg~~~a~~~~SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi--~~~~~d~~d~  134 (392)
T d1gc0a_          57 SNPTLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGV--KLRHVDMADL  134 (392)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTC--EEEEECTTCH
T ss_pred             CChHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHhhccCCCeeecccccchhhhhhhhhhhccCCc--ccccCCccCH
Confidence            35677777777888888888888999888887777666666778888763 44455666666677775  3555543222


Q ss_pred             HHHHHHhhcccCCCceeEEEEeCC--ccchHHHHHHHHhccCc-CeEEEEecccc
Q 029764           83 SVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKV-GGIAVYDNTLW  134 (188)
Q Consensus        83 ~~~~~~~~~~~~~~~~D~i~id~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~~  134 (188)
                      +.+....     ...-++||+...  +......++.+.+.-+. |-.+++||++.
T Consensus       135 ~~~~~ai-----~~~t~lv~~Esp~NP~l~v~Di~~i~~ia~~~g~~~vvDnT~a  184 (392)
T d1gc0a_         135 QALEAAM-----TPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYC  184 (392)
T ss_dssp             HHHHHHC-----CTTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTT
T ss_pred             HHHHHhC-----CCCCeEEEecccccceeeecchHHHHHHHHhcCCEEEEecCcc
Confidence            3333321     356689998742  21111223333333344 45667777654

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=89.97  E-value=2.1  Score=29.84  Aligned_cols=76  Identities=20%  Similarity=0.184  Sum_probs=49.6

Q ss_pred             EEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHHhhcccCC
Q 029764           23 KTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKYSENE   95 (188)
Q Consensus        23 ~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~~~~~   95 (188)
                      .+|-.|++.| .+..+|+.+ ..+.+|+.+|.+++.++.+.+.+...+  .++.++..|..+      .+....+   ..
T Consensus         3 ValITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~---~~   76 (255)
T d1gega_           3 VALVTGAGQG-IGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARK---TL   76 (255)
T ss_dssp             EEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHH---HT
T ss_pred             EEEEcCCccH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHH---Hh
Confidence            3466676554 333333333 137899999999999988888887765  357778887643      2222222   25


Q ss_pred             CceeEEEEe
Q 029764           96 GSFDYAFVD  104 (188)
Q Consensus        96 ~~~D~i~id  104 (188)
                      +..|+++-.
T Consensus        77 g~iDilVnn   85 (255)
T d1gega_          77 GGFDVIVNN   85 (255)
T ss_dssp             TCCCEEEEC
T ss_pred             CCccEEEec
Confidence            789999865

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=89.68  E-value=2.3  Score=29.69  Aligned_cols=81  Identities=17%  Similarity=0.165  Sum_probs=50.9

Q ss_pred             CCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcc-cCCC
Q 029764           21 AKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYS-ENEG   96 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~-~~~~   96 (188)
                      +|.+|-.|+..| .+..+|+.+ ..+.+|+.++.+++.++.+.+.+...+  .++.++..|..+  .+..+.+.. ...+
T Consensus         2 gKValITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~~~g   78 (257)
T d2rhca1           2 SEVALVTGATSG-IGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAG--VEADGRTCDVRSVPEIEALVAAVVERYG   78 (257)
T ss_dssp             CCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            355677776554 333333333 137899999999999998888887765  357888877542  122221110 1257


Q ss_pred             ceeEEEEe
Q 029764           97 SFDYAFVD  104 (188)
Q Consensus        97 ~~D~i~id  104 (188)
                      ..|+++-.
T Consensus        79 ~iDilVnn   86 (257)
T d2rhca1          79 PVDVLVNN   86 (257)
T ss_dssp             SCSEEEEC
T ss_pred             CCCEEEec
Confidence            89988865

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=89.67  E-value=2.4  Score=31.96  Aligned_cols=124  Identities=12%  Similarity=0.099  Sum_probs=76.5

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeC-CchhHHHHHHHHHhcCCCCcEEEEEcchH
Q 029764            4 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDV-NRETYEIGLPIIKKAGVDHKINFIESEAL   82 (188)
Q Consensus         4 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~-~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   82 (188)
                      .+|.+..+=..++.+..+...+-..+|.+..+..+...++++.+|++.+. -.......++.+.+.|+  .+.++..+-.
T Consensus        61 ~nPT~~~LE~~la~LEgg~~a~~~sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi--~~~~vd~~d~  138 (397)
T d1y4ia1          61 GNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGI--NVRFVDAGKP  138 (397)
T ss_dssp             SCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTC--EEEEECTTSH
T ss_pred             CCHHHHHHHHHHHHHhCCccceeehHHHHHHHHHHhhccCCCCeeeeecccccccchhhhcccCCCce--EeeccCCCCH
Confidence            35777777778888888888888888888877777677777888888774 33445566666777775  3555554333


Q ss_pred             HHHHHHhhcccCCCceeEEEEeCC--ccchHHHHHHHHhccCc-CeEEEEecccc
Q 029764           83 SVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKV-GGIAVYDNTLW  134 (188)
Q Consensus        83 ~~~~~~~~~~~~~~~~D~i~id~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~~  134 (188)
                      +.+....     ...-.+||+...  +......++.+.++-++ |..+++||.+.
T Consensus       139 ~~~~~~i-----~~~Tklv~~Esp~NP~l~v~Di~~i~~iA~~~gi~~vvDnT~a  188 (397)
T d1y4ia1         139 EEIRAAM-----RPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFM  188 (397)
T ss_dssp             HHHHHHC-----CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTT
T ss_pred             HHHHHhc-----CCCCcEEEecCCcccceeecccHHHHHHhhcCCceEEecCccc
Confidence            3333321     356789999842  21111123333333334 45666777654

>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.23  E-value=1.5  Score=26.91  Aligned_cols=77  Identities=9%  Similarity=0.071  Sum_probs=52.0

Q ss_pred             CEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCcc--chHHHHHHHHhccCc
Q 029764           46 GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKV  123 (188)
Q Consensus        46 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~--~~~~~~~~~~~~L~~  123 (188)
                      .+|..||-++...+..++.+...|+.  +. ...++.+.+..+.     ...||+|++|...+  +...++..+.+.-..
T Consensus         2 irILiVdDd~~~~~~l~~~L~~~g~~--v~-~a~~~~~al~~l~-----~~~~dlillD~~mp~~~g~~~~~~lr~~~~~   73 (122)
T d1kgsa2           2 VRVLVVEDERDLADLITEALKKEMFT--VD-VCYDGEEGMYMAL-----NEPFDVVILDIMLPVHDGWEILKSMRESGVN   73 (122)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHTTCE--EE-EESSHHHHHHHHH-----HSCCSEEEEESCCSSSCHHHHHHHHHHTTCC
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHCCCE--EE-EEcchHHHHHHHH-----hhCccccccccccccchhHHHHHHHHhcCCC
Confidence            58899999999999999999988853  33 4566666655543     36899999996433  345566666443222


Q ss_pred             CeEEEEe
Q 029764          124 GGIAVYD  130 (188)
Q Consensus       124 gG~lv~~  130 (188)
                      --++++.
T Consensus        74 ~piI~lt   80 (122)
T d1kgsa2          74 TPVLMLT   80 (122)
T ss_dssp             CCEEEEE
T ss_pred             CcEEEEc
Confidence            2345544

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=88.86  E-value=2.1  Score=28.14  Aligned_cols=77  Identities=14%  Similarity=0.020  Sum_probs=42.3

Q ss_pred             CEEEEEcccchHH--HHHHHhhCCCCCEEEE-EeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           22 KKTIEIGVFTGYS--LLLTALTIPEDGQITA-IDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        22 ~~vLeiG~g~G~~--~~~la~~~~~~~~v~~-iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      .+|.=||||.=..  -+......+...++++ +|.+++..+...+.+   +..    ....|..+.+.        ...+
T Consensus         4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~---~~~----~~~~~~~ell~--------~~~i   68 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMV---GNP----AVFDSYEELLE--------SGLV   68 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHH---SSC----EEESCHHHHHH--------SSCC
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccc---ccc----ceeeeeecccc--------cccc
Confidence            4788899874222  1233444443457775 488877655444433   321    22355555443        3679


Q ss_pred             eEEEEeCCccchHHH
Q 029764           99 DYAFVDADKDNYCNY  113 (188)
Q Consensus        99 D~i~id~~~~~~~~~  113 (188)
                      |+|++..+.....+.
T Consensus        69 d~v~I~tp~~~h~~~   83 (181)
T d1zh8a1          69 DAVDLTLPVELNLPF   83 (181)
T ss_dssp             SEEEECCCGGGHHHH
T ss_pred             ceeeccccccccccc
Confidence            999987655443333

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=88.75  E-value=2.7  Score=29.30  Aligned_cols=78  Identities=17%  Similarity=0.224  Sum_probs=48.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHHhhc
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKY   91 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~   91 (188)
                      .+++.+|-.|.+.| .+..+|+.+ ..+.+|+.+|.+++.++.+.+.+   +  .+..++..|..+      .+....+.
T Consensus         4 L~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~~~~~~~~~~~~   77 (253)
T d1hxha_           4 LQGKVALVTGGASG-VGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL---G--ERSMFVRHDVSSEADWTLVMAAVQRR   77 (253)
T ss_dssp             TTTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---C--TTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---C--CCeEEEEeecCCHHHHHHHHHHHHHH
Confidence            46788898887655 333333333 13789999999988777666554   2  356677766532      22222222


Q ss_pred             ccCCCceeEEEEeC
Q 029764           92 SENEGSFDYAFVDA  105 (188)
Q Consensus        92 ~~~~~~~D~i~id~  105 (188)
                         .+..|+++..+
T Consensus        78 ---~g~iDilVnnA   88 (253)
T d1hxha_          78 ---LGTLNVLVNNA   88 (253)
T ss_dssp             ---HCSCCEEEECC
T ss_pred             ---hCCCCeEEecc
Confidence               47899988763

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.64  E-value=1.7  Score=30.27  Aligned_cols=76  Identities=11%  Similarity=0.086  Sum_probs=48.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCC
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENE   95 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~   95 (188)
                      ..++++|-.|++.| .+..+|+.+ ..+.+|+.+|.+++.++...+.+   +   .+..++.|..+  .+.+..++   .
T Consensus         5 L~GK~~lITGas~G-IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~---~---~~~~~~~Dv~d~~~v~~~~~~---~   74 (244)
T d1pr9a_           5 LAGRRVLVTGAGKG-IGRGTVQALHATGARVVAVSRTQADLDSLVREC---P---GIEPVCVDLGDWEATERALGS---V   74 (244)
T ss_dssp             CTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS---T---TCEEEECCTTCHHHHHHHHTT---C
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc---C---CCeEEEEeCCCHHHHHHHHHH---h
Confidence            46789999998766 333333333 12789999999988776555432   2   36677777643  23344333   5


Q ss_pred             CceeEEEEe
Q 029764           96 GSFDYAFVD  104 (188)
Q Consensus        96 ~~~D~i~id  104 (188)
                      +++|+++-.
T Consensus        75 g~iDilVnn   83 (244)
T d1pr9a_          75 GPVDLLVNN   83 (244)
T ss_dssp             CCCCEEEEC
T ss_pred             CCceEEEec
Confidence            789988765

>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: Receiver domain of the ethylene receptor
domain: Receiver domain of the ethylene receptor
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.55  E-value=1.3  Score=27.70  Aligned_cols=66  Identities=12%  Similarity=0.140  Sum_probs=47.7

Q ss_pred             CCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCccc--hHHHHHHHHh
Q 029764           45 DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK  119 (188)
Q Consensus        45 ~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~--~~~~~~~~~~  119 (188)
                      +.+|..||-++......++.++..|+.  +. ...+..+.+..+      ...||+|++|...+.  -.++.+.+.+
T Consensus         7 g~rILvVDD~~~~~~~l~~~L~~~G~~--v~-~a~~g~eal~~l------~~~~dlillD~~mP~~dG~el~~~ir~   74 (134)
T d1dcfa_           7 GLKVLVMDENGVSRMVTKGLLVHLGCE--VT-TVSSNEECLRVV------SHEHKVVFMDVCMPGVENYQIALRIHE   74 (134)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHHTTCE--EE-EESSHHHHHHHC------CTTCSEEEEECCSSTTTTTHHHHHHHH
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHh------hcCCCeEEEEeccCCCchHHHHHHHHH
Confidence            679999999999999999999998862  33 456676666543      357999999975432  3455555543

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=88.41  E-value=1.4  Score=30.87  Aligned_cols=82  Identities=15%  Similarity=0.161  Sum_probs=50.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcc-cC
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYS-EN   94 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~-~~   94 (188)
                      .+++.+|-.|.+.| .+..+|+.+ ..+.+|+.++.+++.++.+.+.+..   ..++.++..|..+  .+..+.+.. ..
T Consensus         4 L~gK~alVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (251)
T d1zk4a1           4 LDGKVAIITGGTLG-IGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT---PDQIQFFQHDSSDEDGWTKLFDATEKA   79 (251)
T ss_dssp             TTTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC---CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            46788888887665 333333332 1278999999999888777776543   3468888888643  122211110 12


Q ss_pred             CCceeEEEEe
Q 029764           95 EGSFDYAFVD  104 (188)
Q Consensus        95 ~~~~D~i~id  104 (188)
                      .+..|+++-.
T Consensus        80 ~G~iDiLVnn   89 (251)
T d1zk4a1          80 FGPVSTLVNN   89 (251)
T ss_dssp             HSSCCEEEEC
T ss_pred             hCCceEEEec
Confidence            4789988765

>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Bacillus subtilis [TaxId: 1423]

Probab=88.37  E-value=1.7  Score=26.53  Aligned_cols=77  Identities=13%  Similarity=0.076  Sum_probs=51.8

Q ss_pred             CEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCcc--chHHHHHHHHhccCc
Q 029764           46 GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKV  123 (188)
Q Consensus        46 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~--~~~~~~~~~~~~L~~  123 (188)
                      .+|..||-++......++.++..|+.  +. ...++.+.+..+.     ...||+|++|...+  +...++..+...-..
T Consensus         3 krILiVDDd~~~~~~l~~~L~~~g~~--v~-~a~~~~~al~~l~-----~~~~dlillD~~mp~~~G~~~~~~~r~~~~~   74 (121)
T d1mvoa_           3 KKILVVDDEESIVTLLQYNLERSGYD--VI-TASDGEEALKKAE-----TEKPDLIVLDVMLPKLDGIEVCKQLRQQKLM   74 (121)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCE--EE-EESSHHHHHHHHH-----HHCCSEEEEESSCSSSCHHHHHHHHHHTTCC
T ss_pred             CCEEEEECCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHHh-----cccccEEEecccccCCCCchhhhhhhccCCC
Confidence            48999999999999999999998853  33 4566666655543     25899999996433  344555665443333


Q ss_pred             CeEEEEe
Q 029764          124 GGIAVYD  130 (188)
Q Consensus       124 gG~lv~~  130 (188)
                      --++++.
T Consensus        75 ~~ii~lt   81 (121)
T d1mvoa_          75 FPILMLT   81 (121)
T ss_dssp             CCEEEEE
T ss_pred             CEEEEEE
Confidence            3455554

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=88.32  E-value=0.91  Score=27.87  Aligned_cols=52  Identities=15%  Similarity=0.089  Sum_probs=36.3

Q ss_pred             HHcCCCEEEEEcccchHHHHHHHhhCC-CCCEEEEEeC--------CchhHHHHHHHHHhcCC
Q 029764           17 RLVNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDV--------NRETYEIGLPIIKKAGV   70 (188)
Q Consensus        17 ~~~~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~--------~~~~~~~a~~~~~~~~~   70 (188)
                      ....|++|+=+|+  |..++.+|..+. .+.+|+.++.        +++..+.+++.+++.|.
T Consensus        18 ~l~~p~~v~IiGg--G~iG~E~A~~l~~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~gV   78 (117)
T d1onfa2          18 NIKESKKIGIVGS--GYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNI   78 (117)
T ss_dssp             TCCCCSEEEEECC--SHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTC
T ss_pred             ccCCCCEEEEECC--chHHHHHHHHHHhccccceeeehhccccccccHHHHHHHHHHHHhCCC
Confidence            4556899999998  555555555442 2679999996        45566777778877664

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.85  E-value=0.75  Score=32.32  Aligned_cols=64  Identities=8%  Similarity=-0.005  Sum_probs=43.8

Q ss_pred             CCCEEEEEcccchH---HHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029764           20 NAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   83 (188)
Q Consensus        20 ~~~~vLeiG~g~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   83 (188)
                      .++.+|-.|++.|-   .+..||+....+.+|+.++.+++.++.+.+.+...+...++.++..|..+
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~   71 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGT   71 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCC
Confidence            45566666766553   23334443334789999999999998888877765545578888888653

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=87.84  E-value=3  Score=28.76  Aligned_cols=77  Identities=12%  Similarity=0.063  Sum_probs=47.0

Q ss_pred             cCCCEEEEEcccc--h--H-HHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH------HHHH
Q 029764           19 VNAKKTIEIGVFT--G--Y-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQ   87 (188)
Q Consensus        19 ~~~~~vLeiG~g~--G--~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~   87 (188)
                      ..++.+|-.|+++  |  . .+..|++.   +.+|+..+.+++..+.+++.....+.   ......|..+      ....
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~---G~~V~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~   76 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHRE---GAELAFTYQNDKLKGRVEEFAAQLGS---DIVLQCDVAEDASIDTMFAE   76 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHT---TCEEEEEESSTTTHHHHHHHHHHTTC---CCEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHhhcCC---cceeecccchHHHHHHHHHH
Confidence            4678899988755  3  2 44455553   78999999998888877776666552   2333333221      1222


Q ss_pred             HhhcccCCCceeEEEEe
Q 029764           88 LLKYSENEGSFDYAFVD  104 (188)
Q Consensus        88 ~~~~~~~~~~~D~i~id  104 (188)
                      ..   ...+..|.++..
T Consensus        77 ~~---~~~~~~d~~v~~   90 (258)
T d1qsga_          77 LG---KVWPKFDGFVHS   90 (258)
T ss_dssp             HH---TTCSSEEEEEEC
T ss_pred             hh---hcccccceEEEe
Confidence            22   235778888755

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=87.66  E-value=0.17  Score=32.94  Aligned_cols=90  Identities=12%  Similarity=-0.020  Sum_probs=54.3

Q ss_pred             EEEEEcccc-hH-HHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCC--CcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           23 KTIEIGVFT-GY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD--HKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        23 ~vLeiG~g~-G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      +|+=||+|. |. .+..|++.   +..|+.++.+++.....+    ..+..  ........+..+.          ...+
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~---G~~V~~~~r~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~----------~~~~   64 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQ---GHEVQGWLRVPQPYCSVN----LVETDGSIFNESLTANDPDF----------LATS   64 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT---TCEEEEECSSCCSEEEEE----EECTTSCEEEEEEEESCHHH----------HHTC
T ss_pred             EEEEECcCHHHHHHHHHHHHC---CCceEEEEcCHHHhhhhc----cccCCccccccccccchhhh----------hccc
Confidence            578888865 32 33334443   568999998776433211    11111  1111222222221          1579


Q ss_pred             eEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764           99 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        99 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      |+||+..........++.+.+.++++..++.
T Consensus        65 D~iii~vka~~~~~~~~~l~~~~~~~~~Iv~   95 (167)
T d1ks9a2          65 DLLLVTLKAWQVSDAVKSLASTLPVTTPILL   95 (167)
T ss_dssp             SEEEECSCGGGHHHHHHHHHTTSCTTSCEEE
T ss_pred             ceEEEeecccchHHHHHhhccccCcccEEee
Confidence            9999988777788889999999999886665

>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=87.44  E-value=2.2  Score=26.71  Aligned_cols=75  Identities=11%  Similarity=0.100  Sum_probs=50.8

Q ss_pred             EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCC--ccchHHHHHHHHhccCcC
Q 029764           47 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVG  124 (188)
Q Consensus        47 ~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~--~~~~~~~~~~~~~~L~~g  124 (188)
                      +|..||-++......+..+...|+.  +. ...+..+.+..+.     ...||+|++|..  ..+..++++.+... .+.
T Consensus         2 kILiVDDd~~~~~~l~~~L~~~g~~--v~-~a~~~~eAl~~l~-----~~~~dlvilD~~mp~~~G~e~~~~lr~~-~~~   72 (137)
T d1ny5a1           2 NVLVIEDDKVFRGLLEEYLSMKGIK--VE-SAERGKEAYKLLS-----EKHFNVVLLDLLLPDVNGLEILKWIKER-SPE   72 (137)
T ss_dssp             EEEEECCCHHHHHHHHHHHHHHTCE--EE-EESSHHHHHHHHH-----HSCCSEEEEESBCSSSBHHHHHHHHHHH-CTT
T ss_pred             EEEEEecCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHhh-----ccccccchHHHhhhhhhHHHHHHHHHHh-CCC
Confidence            6888999999999999999988852  43 4566666555443     368999999953  33445666666543 344


Q ss_pred             e-EEEEe
Q 029764          125 G-IAVYD  130 (188)
Q Consensus       125 G-~lv~~  130 (188)
                      - ++++.
T Consensus        73 ~piI~lT   79 (137)
T d1ny5a1          73 TEVIVIT   79 (137)
T ss_dssp             SEEEEEE
T ss_pred             CCEEEEE
Confidence            3 44443

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=87.29  E-value=2.3  Score=31.97  Aligned_cols=123  Identities=11%  Similarity=0.093  Sum_probs=75.5

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeC-CchhHHHHHHHHHhcCCCCcEEEEEc-ch
Q 029764            4 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDV-NRETYEIGLPIIKKAGVDHKINFIES-EA   81 (188)
Q Consensus         4 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~-~~~~~~~a~~~~~~~~~~~~~~~~~~-d~   81 (188)
                      ..|....+=+.++.+..+...+-..+|....+..+...++++.+|++.+. -.......++.+.+.|.  .+.+... |.
T Consensus        56 ~nPt~~~le~~la~LEg~~~a~~~~SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi--~~~~~d~~d~  133 (391)
T d1cl1a_          56 GTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGV--TTSWFDPLIG  133 (391)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGTC--EEEEECTTCG
T ss_pred             CChhHHHHHHHHHHHhCCccEEEeccccceeeehhhcccCCCCeEEEecccccchhhhhhhccccccc--ccccccCccc
Confidence            46777777788888888888998888877766665555666788888763 44455556666666664  3444442 33


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCC------ccchHHHHHHHHhccCcCeEEEEeccccC
Q 029764           82 LSVLDQLLKYSENEGSFDYAFVDAD------KDNYCNYHERLMKLLKVGGIAVYDNTLWG  135 (188)
Q Consensus        82 ~~~~~~~~~~~~~~~~~D~i~id~~------~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  135 (188)
                      .++...+      .....+||+...      ..+...+ ..+.+.-++|..+|+||.+..
T Consensus       134 ~~~~~~i------~~~t~~i~~EtpsNP~l~v~Di~~i-~~~a~~~~~g~~~vVDnT~at  186 (391)
T d1cl1a_         134 ADIVKHL------QPNTKIVFLESPGSITMEVHDVPAI-VAAVRSVVPDAIIMIDNTWAA  186 (391)
T ss_dssp             GGGGGTC------CTTEEEEEEESSCTTTCCCCCHHHH-HHHHHHHCTTCEEEEECTTTT
T ss_pred             ccccccc------ccccceeeecccCcccccccccHHH-HHHHHhccCCcEEEEeccccc
Confidence            2222111      356789998742      1233333 233333456888999987753

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.10  E-value=2.6  Score=29.32  Aligned_cols=79  Identities=14%  Similarity=0.088  Sum_probs=50.7

Q ss_pred             cCCCEEEEEcccchH---HHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHH-hcCCCCcEEEEEcchHH------HHHHH
Q 029764           19 VNAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIK-KAGVDHKINFIESEALS------VLDQL   88 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-~~~~~~~~~~~~~d~~~------~~~~~   88 (188)
                      .+++.+|-.|++.|-   .+..|++.   +.+|+.+|.+++.++.+.+.+. ..+  .++..+..|..+      .+...
T Consensus         3 l~gK~~lITGas~GIG~aia~~la~~---Ga~V~i~~r~~~~~~~~~~~l~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~   77 (251)
T d1vl8a_           3 LRGRVALVTGGSRGLGFGIAQGLAEA---GCSVVVASRNLEEASEAAQKLTEKYG--VETMAFRCDVSNYEEVKKLLEAV   77 (251)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHHH
Confidence            357889999987663   33344443   7899999999888776665553 334  357777877542      22222


Q ss_pred             hhcccCCCceeEEEEeC
Q 029764           89 LKYSENEGSFDYAFVDA  105 (188)
Q Consensus        89 ~~~~~~~~~~D~i~id~  105 (188)
                      .+.   .+++|+++-.+
T Consensus        78 ~~~---~g~iDiLVnnA   91 (251)
T d1vl8a_          78 KEK---FGKLDTVVNAA   91 (251)
T ss_dssp             HHH---HSCCCEEEECC
T ss_pred             HHH---cCCCCEEEECC
Confidence            221   47899998653

>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Escherichia coli [TaxId: 562]

Probab=86.90  E-value=2.1  Score=26.04  Aligned_cols=76  Identities=18%  Similarity=0.002  Sum_probs=50.5

Q ss_pred             EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCcc--chHHHHHHHHhccCcC
Q 029764           47 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVG  124 (188)
Q Consensus        47 ~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~--~~~~~~~~~~~~L~~g  124 (188)
                      +|..||-++......++.++..|+.  +. ...+..+.+..+.     ...||+|++|...+  +-.++++.+.+.-+.-
T Consensus         2 rILvVDDd~~~~~~l~~~L~~~G~~--v~-~a~~g~eal~~l~-----~~~~dliilD~~mP~~~G~e~~~~i~~~~~~~   73 (119)
T d2pl1a1           2 RVLVVEDNALLRHHLKVQIQDAGHQ--VD-DAEDAKEADYYLN-----EHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSL   73 (119)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTCE--EE-EESSHHHHHHHHH-----HSCCSEEEECSCCSSSCHHHHHHHHHHTTCCS
T ss_pred             EEEEEeCCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHHH-----hcccceeehhccCCCchhHHHHHHHHhcCccc
Confidence            6889999999999999999988852  32 4556655555443     36899999996433  3456667665543222


Q ss_pred             eEEEEe
Q 029764          125 GIAVYD  130 (188)
Q Consensus       125 G~lv~~  130 (188)
                      -++++.
T Consensus        74 pvi~lt   79 (119)
T d2pl1a1          74 PILVLT   79 (119)
T ss_dssp             CEEEEE
T ss_pred             ceEeee
Confidence            344443

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=86.84  E-value=1.5  Score=30.85  Aligned_cols=83  Identities=11%  Similarity=0.083  Sum_probs=52.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcc-cC
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYS-EN   94 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~-~~   94 (188)
                      .+++.+|-.|.+.|- +..+|+.+ ..+.+|+.+|.+++.++.+.+.+...+  .++.++..|..+  ....+.+.. ..
T Consensus         6 L~GK~alITGas~GI-G~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~   82 (259)
T d2ae2a_           6 LEGCTALVTGGSRGI-GYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANH   82 (259)
T ss_dssp             CTTCEEEEESCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCCHHHHHHHHHHHHHH
Confidence            357889988887653 33333332 127899999999999988888877765  457778877542  122221110 11


Q ss_pred             C-CceeEEEEe
Q 029764           95 E-GSFDYAFVD  104 (188)
Q Consensus        95 ~-~~~D~i~id  104 (188)
                      . +..|+++-.
T Consensus        83 ~~~~idilvnn   93 (259)
T d2ae2a_          83 FHGKLNILVNN   93 (259)
T ss_dssp             TTTCCCEEEEC
T ss_pred             hCCCceEEEEC
Confidence            2 379999865

>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Cell division response regulator DivK
species: Caulobacter crescentus [TaxId: 155892]

Probab=86.73  E-value=2.2  Score=26.04  Aligned_cols=66  Identities=15%  Similarity=0.156  Sum_probs=47.4

Q ss_pred             CEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCc--cchHHHHHHHHh
Q 029764           46 GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMK  119 (188)
Q Consensus        46 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~--~~~~~~~~~~~~  119 (188)
                      .+|..||-++......++.++..|+.  + ....++.+.+..+.     ...||+|++|...  .+-.++++.+.+
T Consensus         2 krILiVDD~~~~~~~l~~~L~~~g~~--v-~~a~~~~~al~~~~-----~~~~dlil~D~~mp~~dG~el~~~ir~   69 (123)
T d1mb3a_           2 KKVLIVEDNELNMKLFHDLLEAQGYE--T-LQTREGLSALSIAR-----ENKPDLILMDIQLPEISGLEVTKWLKE   69 (123)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCE--E-EEESCHHHHHHHHH-----HHCCSEEEEESBCSSSBHHHHHHHHHH
T ss_pred             ceEEEEECCHHHHHHHHHHHHHCCCE--E-EEECCHHHHHHHHH-----hCCCCEEEEEeccCCCcHHHHHHHHHh
Confidence            37899999999999999999998852  3 24566666655443     2579999999643  345566666654

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=86.32  E-value=3.9  Score=28.57  Aligned_cols=78  Identities=17%  Similarity=0.188  Sum_probs=48.6

Q ss_pred             cCCCEEEEEcccchH---HHHHHHhhCCCCCEEEEEeCC-chhHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHH
Q 029764           19 VNAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVN-RETYEIGLPIIKKAGVDHKINFIESEALS------VLDQL   88 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~---~~~~la~~~~~~~~v~~iD~~-~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~   88 (188)
                      .+++.+|-.|+..|-   .+..|++.   +.+|+..+.+ ++.++.+.+.++..+  .++.++..|..+      .+...
T Consensus        16 L~gK~~lITGas~GIG~aia~~la~~---Ga~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~v~~~~~~~   90 (272)
T d1g0oa_          16 LEGKVALVTGAGRGIGREMAMELGRR---GCKVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEA   90 (272)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHT---TCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHc---CCEEEEEeCCchHHHHHHHHHHHhhC--CceeeEeCCCCCHHHHHHHHHHH
Confidence            456888888886663   33344443   6799998876 455666666666655  357777877543      22222


Q ss_pred             hhcccCCCceeEEEEe
Q 029764           89 LKYSENEGSFDYAFVD  104 (188)
Q Consensus        89 ~~~~~~~~~~D~i~id  104 (188)
                      .+   ..+..|+++..
T Consensus        91 ~~---~~g~idilV~n  103 (272)
T d1g0oa_          91 VK---IFGKLDIVCSN  103 (272)
T ss_dssp             HH---HHSCCCEEEEC
T ss_pred             HH---HhCCCCccccc
Confidence            22   24688988765

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=86.24  E-value=3.6  Score=28.66  Aligned_cols=83  Identities=12%  Similarity=0.080  Sum_probs=50.0

Q ss_pred             CCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHH-hcCCCCcEEEEEcchHH--HHHHHhhcc-cC
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIK-KAGVDHKINFIESEALS--VLDQLLKYS-EN   94 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~-~~~~~~~~~~~~~d~~~--~~~~~~~~~-~~   94 (188)
                      ++|++|-.|.+.| .+..+|+.+ ..+.+|+.++.+++.+..+.+.+. ..+  .++.++..|..+  .+..+.+.. ..
T Consensus         8 ~gK~alITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (260)
T d1h5qa_           8 VNKTIIVTGGNRG-IGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFG--VKTKAYQCDVSNTDIVTKTIQQIDAD   84 (260)
T ss_dssp             TTEEEEEETTTSH-HHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC--CceEEEEccCCCHHHHHHHHHHHHHH
Confidence            5678898887655 333333333 127899999999887766655543 334  457788887543  122221110 12


Q ss_pred             CCceeEEEEeC
Q 029764           95 EGSFDYAFVDA  105 (188)
Q Consensus        95 ~~~~D~i~id~  105 (188)
                      .+..|+++..+
T Consensus        85 ~g~iDilVnnA   95 (260)
T d1h5qa_          85 LGPISGLIANA   95 (260)
T ss_dssp             SCSEEEEEECC
T ss_pred             hCCCcEecccc
Confidence            57899887653

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.05  E-value=4.2  Score=30.32  Aligned_cols=123  Identities=12%  Similarity=0.180  Sum_probs=72.3

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeC-CchhHHHHHHHHHhcCCCCcEEEEEcchH
Q 029764            4 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDV-NRETYEIGLPIIKKAGVDHKINFIESEAL   82 (188)
Q Consensus         4 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~-~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   82 (188)
                      .+|.+..+=+.++.+..+...+-..+|....+. +...++++.+|++.+. -.......++.+.+.|.  .+.+...+-.
T Consensus        47 ~nPt~~~le~~la~LE~~~~a~~fsSGMaAisa-ll~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi--~~~~~d~~~~  123 (380)
T d1ibja_          47 GNPTRDALESLLAKLDKADRAFCFTSGMAALSA-VTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGV--VVKRVNTTKL  123 (380)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTC--EEEEECTTSH
T ss_pred             CChHHHHHHHHHHHHcCCceEEehhhHHHHHHH-HHHhhCCCCEEEEEecccccccchhhhhhccccc--cccccCcchH
Confidence            467777777888888888888888887777654 4444555788888764 33444555555555664  2555554433


Q ss_pred             HHHHHHhhcccCCCceeEEEEeC--CccchHHHHHHHHhccCcCe-EEEEecccc
Q 029764           83 SVLDQLLKYSENEGSFDYAFVDA--DKDNYCNYHERLMKLLKVGG-IAVYDNTLW  134 (188)
Q Consensus        83 ~~~~~~~~~~~~~~~~D~i~id~--~~~~~~~~~~~~~~~L~~gG-~lv~~~~~~  134 (188)
                      +.+....     ...-.+||+..  ++......++.+.++-+..| .+|+||++.
T Consensus       124 ~~~~~ai-----~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vVDnT~a  173 (380)
T d1ibja_         124 DEVAAAI-----GPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIM  173 (380)
T ss_dssp             HHHHHHC-----CSSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTT
T ss_pred             HHHHHHh-----ccCccEEEeccccccccccccHHHHHHHHHHcCCeEEeecccc
Confidence            4333321     45778999974  22211222344444444444 566666654

>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein FixJ, receiver domain
species: Rhizobium meliloti [TaxId: 382]

Probab=85.91  E-value=2.5  Score=25.88  Aligned_cols=76  Identities=12%  Similarity=0.043  Sum_probs=52.6

Q ss_pred             CCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCc--cchHHHHHHHHhccC
Q 029764           45 DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLK  122 (188)
Q Consensus        45 ~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~--~~~~~~~~~~~~~L~  122 (188)
                      +.+|..||-++......+..++..|+  .+. ...++.+.+..+.     ...||+|++|...  .+-.++++.+.+. .
T Consensus         3 ~~~ILiVDDd~~~~~~l~~~L~~~g~--~v~-~a~~~~~al~~~~-----~~~~dlvi~D~~mp~~~G~e~~~~lr~~-~   73 (123)
T d1dbwa_           3 DYTVHIVDDEEPVRKSLAFMLTMNGF--AVK-MHQSAEAFLAFAP-----DVRNGVLVTDLRMPDMSGVELLRNLGDL-K   73 (123)
T ss_dssp             CCEEEEEESSHHHHHHHHHHHHHTTC--EEE-EESCHHHHHHHGG-----GCCSEEEEEECCSTTSCHHHHHHHHHHT-T
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHh-----hcCCcEEEEeccCccccchHHHHHHHhc-C
Confidence            46899999999999999999999885  243 3556666555442     3689999999643  3456677777553 4


Q ss_pred             cCeEEEE
Q 029764          123 VGGIAVY  129 (188)
Q Consensus       123 ~gG~lv~  129 (188)
                      +.-.+++
T Consensus        74 ~~~~iI~   80 (123)
T d1dbwa_          74 INIPSIV   80 (123)
T ss_dssp             CCCCEEE
T ss_pred             CCCeEEE
Confidence            5443333

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=85.87  E-value=4  Score=28.20  Aligned_cols=77  Identities=12%  Similarity=0.160  Sum_probs=48.1

Q ss_pred             cCCCEEEEEccc----chH-HHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH------HHHH
Q 029764           19 VNAKKTIEIGVF----TGY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQ   87 (188)
Q Consensus        19 ~~~~~vLeiG~g----~G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~   87 (188)
                      .+++++|-.|++    .|. .+..|++.   +.+|+..+.+++..+.+++.....+   +..++..|..+      .+..
T Consensus         6 L~gK~alITGas~~~GIG~aiA~~la~~---Ga~V~i~~~~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~   79 (256)
T d1ulua_           6 LSGKKALVMGVTNQRSLGFAIAAKLKEA---GAEVALSYQAERLRPEAEKLAEALG---GALLFRADVTQDEELDALFAG   79 (256)
T ss_dssp             CTTCEEEEESCCCSSSHHHHHHHHHHHT---TCEEEEEESSGGGHHHHHHHHHHTT---CCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHC---CCEEEEEeCcHHHHHHHHHhhhccC---cccccccccCCHHHHHHHHHH
Confidence            367899999953    444 44445553   7799999998887777776655544   34566766532      2222


Q ss_pred             HhhcccCCCceeEEEEe
Q 029764           88 LLKYSENEGSFDYAFVD  104 (188)
Q Consensus        88 ~~~~~~~~~~~D~i~id  104 (188)
                      ..+.   .+..|.++-.
T Consensus        80 ~~~~---~g~iDilVnn   93 (256)
T d1ulua_          80 VKEA---FGGLDYLVHA   93 (256)
T ss_dssp             HHHH---HSSEEEEEEC
T ss_pred             HHHh---cCCceEEEec
Confidence            2222   4789988754

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=85.75  E-value=0.29  Score=33.03  Aligned_cols=38  Identities=18%  Similarity=0.202  Sum_probs=28.1

Q ss_pred             EEEEEcccchHHHHHHHhhCCCCCEEEEEeCCchhHHHHH
Q 029764           23 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGL   62 (188)
Q Consensus        23 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~   62 (188)
                      +|--||.  |+.++.+|..+..+.+|+++|++++.++..+
T Consensus         2 kI~ViGl--G~vGl~~a~~~a~g~~V~g~Din~~~v~~l~   39 (196)
T d1dlja2           2 KIAVAGS--GYVGLSLGVLLSLQNEVTIVDILPSKVDKIN   39 (196)
T ss_dssp             EEEEECC--SHHHHHHHHHHTTTSEEEEECSCHHHHHHHH
T ss_pred             EEEEECC--ChhHHHHHHHHHCCCcEEEEECCHHHHHHHh
Confidence            4556665  6776666665555789999999999887665

>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sensor kinase protein RcsC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.42  E-value=2.8  Score=26.03  Aligned_cols=67  Identities=13%  Similarity=0.177  Sum_probs=47.3

Q ss_pred             CCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCc--cchHHHHHHHHh
Q 029764           45 DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMK  119 (188)
Q Consensus        45 ~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~--~~~~~~~~~~~~  119 (188)
                      +.+|..||-++...+..++.+...|+.  +. ...+..+.+..+.     ...||+|++|...  .+-.++++.+.+
T Consensus         8 ~~~ILiVDD~~~~~~~l~~~L~~~g~~--v~-~a~~g~ea~~~~~-----~~~~dlillD~~mP~~dG~el~~~ir~   76 (133)
T d2ayxa1           8 DMMILVVDDHPINRRLLADQLGSLGYQ--CK-TANDGVDALNVLS-----KNHIDIVLSDVNMPNMDGYRLTQRIRQ   76 (133)
T ss_dssp             CCEEEEEESSHHHHHHHHHHHHHHTSE--EE-EECCSHHHHHHHH-----HSCCSEEEEEESSCSSCCHHHHHHHHH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCCE--EE-EECcHHHHHHHHh-----ccCceEEEEeccCCCCCHHHHHHHHHH
Confidence            578999999999999999999998852  33 4555655554432     3689999999533  234556666644

>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0A
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.23  E-value=2.7  Score=25.68  Aligned_cols=76  Identities=16%  Similarity=0.057  Sum_probs=50.4

Q ss_pred             CEEEEEeCCchhHHHHHHHHHhcCCCCcEEE--EEcchHHHHHHHhhcccCCCceeEEEEeCCcc--chHHHHHHHHhcc
Q 029764           46 GQITAIDVNRETYEIGLPIIKKAGVDHKINF--IESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLL  121 (188)
Q Consensus        46 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~--~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~--~~~~~~~~~~~~L  121 (188)
                      -+|..+|-++......++.+...+.   .+.  ...+..+.+..+.     ...||+|++|...+  +-.++++.+.+..
T Consensus         2 irILivDD~~~~~~~l~~~L~~~~~---~~~v~~a~~g~~al~~~~-----~~~~dlillD~~mP~~dG~e~~~~ir~~~   73 (123)
T d1dz3a_           2 IKVCIADDNRELVSLLDEYISSQPD---MEVIGTAYNGQDCLQMLE-----EKRPDILLLDIIMPHLDGLAVLERIRAGF   73 (123)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHTSTT---EEEEEEESSHHHHHHHHH-----HHCCSEEEEESCCSSSCHHHHHHHHHHHC
T ss_pred             cEEEEEeCCHHHHHHHHHHHHhCCC---cEEEEEECCHHHHHHHHH-----hcCCCEEEEcCCCCCCCHHHHHHHHHhcC
Confidence            3788999999999999998876552   332  3456666655443     25799999997543  4456777776544


Q ss_pred             CcCe-EEEE
Q 029764          122 KVGG-IAVY  129 (188)
Q Consensus       122 ~~gG-~lv~  129 (188)
                      ...- ++++
T Consensus        74 ~~~~~ii~~   82 (123)
T d1dz3a_          74 EHQPNVIML   82 (123)
T ss_dssp             SSCCEEEEE
T ss_pred             CCCCeEEEE
Confidence            4333 3444

>d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulatory protein StyR, N-terminal domain
species: Pseudomonas fluorescens [TaxId: 294]

Probab=85.17  E-value=2.8  Score=25.77  Aligned_cols=75  Identities=13%  Similarity=0.075  Sum_probs=51.8

Q ss_pred             EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCc--cchHHHHHHHHhccCcC
Q 029764           47 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLKVG  124 (188)
Q Consensus        47 ~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~--~~~~~~~~~~~~~L~~g  124 (188)
                      +|..||-++...+..++.++..|+.  + ....+..+.+..+     ....||+|++|...  .+...+++.+.+.-..-
T Consensus         4 ~ILiVDDd~~~~~~l~~~L~~~g~~--v-~~a~~~~~al~~~-----~~~~~dliilD~~mp~~~G~~~~~~i~~~~~~~   75 (128)
T d1yioa2           4 TVFVVDDDMSVREGLRNLLRSAGFE--V-ETFDCASTFLEHR-----RPEQHGCLVLDMRMPGMSGIELQEQLTAISDGI   75 (128)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTTTCE--E-EEESSHHHHHHHC-----CTTSCEEEEEESCCSSSCHHHHHHHHHHTTCCC
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCC--c-cccccHHHHHHHH-----HhcCCCEeehhhhcccchhHHHHHHHHhhCCCC
Confidence            8999999999999999999988752  3 2445666666554     24789999999643  34456667765543333


Q ss_pred             eEEEE
Q 029764          125 GIAVY  129 (188)
Q Consensus       125 G~lv~  129 (188)
                      -++++
T Consensus        76 ~ii~l   80 (128)
T d1yioa2          76 PIVFI   80 (128)
T ss_dssp             CEEEE
T ss_pred             eEEEE
Confidence            44544

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=85.00  E-value=4.8  Score=28.35  Aligned_cols=81  Identities=14%  Similarity=0.090  Sum_probs=50.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHH------HHHHhhc
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKY   91 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~------~~~~~~~   91 (188)
                      .+++++|-.|+..| .+..+|+.+ ..+.+|+.+|.+++.++.+.+.+.... ..++.++..|..+.      ...... 
T Consensus        23 l~gK~alITGas~G-IG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~-g~~~~~~~~D~~~~~~v~~~~~~~~~-   99 (294)
T d1w6ua_          23 FQGKVAFITGGGTG-LGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTVSELIK-   99 (294)
T ss_dssp             TTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHH-
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhc-CCceEEEEecccChHHHHHHhhhhhh-
Confidence            45578999997665 333344333 137899999999988877666554322 24567777765431      122222 


Q ss_pred             ccCCCceeEEEEe
Q 029764           92 SENEGSFDYAFVD  104 (188)
Q Consensus        92 ~~~~~~~D~i~id  104 (188)
                        ..+..|+++..
T Consensus       100 --~~g~iDilvnn  110 (294)
T d1w6ua_         100 --VAGHPNIVINN  110 (294)
T ss_dssp             --HTCSCSEEEEC
T ss_pred             --hccccchhhhh
Confidence              25789988765

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=84.95  E-value=4.5  Score=28.03  Aligned_cols=79  Identities=15%  Similarity=0.181  Sum_probs=49.1

Q ss_pred             CCCEEEEEcccchHHHHHHHhhCC-CCCEEEEE-eCCchhHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHHhhc
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAI-DVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKY   91 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~i-D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~   91 (188)
                      .++.+|-.|.+.| .+..+|+.+. .+.+|+.. ..+++..+.+.+.+...+  .++.++..|..+      .+....++
T Consensus         5 ~GK~alITGas~G-IG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~~~   81 (259)
T d1ja9a_           5 AGKVALTTGAGRG-IGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISKPSEVVALFDKAVSH   81 (259)
T ss_dssp             TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcC--CCceEecCCCCCHHHHHHHHHHHHHH
Confidence            5678887776544 4444443331 26677764 566677788888888766  357788877643      22222222


Q ss_pred             ccCCCceeEEEEe
Q 029764           92 SENEGSFDYAFVD  104 (188)
Q Consensus        92 ~~~~~~~D~i~id  104 (188)
                         .+..|.++..
T Consensus        82 ---~g~idilinn   91 (259)
T d1ja9a_          82 ---FGGLDFVMSN   91 (259)
T ss_dssp             ---HSCEEEEECC
T ss_pred             ---cCCCcEEEec
Confidence               4689988865

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=84.92  E-value=4.4  Score=27.91  Aligned_cols=77  Identities=13%  Similarity=0.069  Sum_probs=48.0

Q ss_pred             CCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHHhhcc
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKYS   92 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~~   92 (188)
                      +++.+|-.|.+.|- +..+|+.+ ..+.+|+.++.+++.++...+.+.     .+...+..|..+      .+....+. 
T Consensus         3 ~gK~alITGas~GI-G~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~-   75 (243)
T d1q7ba_           3 EGKIALVTGASRGI-GRAIAETLAARGAKVIGTATSENGAQAISDYLG-----ANGKGLMLNVTDPASIESVLEKIRAE-   75 (243)
T ss_dssp             TTCEEEESSCSSHH-HHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCCHH-HHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC-----CCCcEEEEEecCHHHhhhhhhhhhcc-
Confidence            56788888876653 33333332 137899999999988877766553     246667776532      22232222 


Q ss_pred             cCCCceeEEEEeC
Q 029764           93 ENEGSFDYAFVDA  105 (188)
Q Consensus        93 ~~~~~~D~i~id~  105 (188)
                        .+..|+++-.+
T Consensus        76 --~g~iDilVnnA   86 (243)
T d1q7ba_          76 --FGEVDILVNNA   86 (243)
T ss_dssp             --TCSCSEEEECC
T ss_pred             --cCCcceehhhh
Confidence              57899888653

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=84.70  E-value=2.7  Score=29.88  Aligned_cols=75  Identities=16%  Similarity=0.116  Sum_probs=44.3

Q ss_pred             EEEEEcccchHHHHHHHhhC-CCCCEEEEEe-CCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCce
Q 029764           23 KTIEIGVFTGYSLLLTALTI-PEDGQITAID-VNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSF   98 (188)
Q Consensus        23 ~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD-~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~   98 (188)
                      +||-.| |+|+.+..+.+.+ ..+.+|+++| +++.......+.+..   ..+++++.+|..+  .+....+    ..++
T Consensus         2 KILVTG-atGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~---~~~~~~i~~Di~~~~~l~~~~~----~~~~   73 (338)
T d1orra_           2 KLLITG-GCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSS---LGNFEFVHGDIRNKNDVTRLIT----KYMP   73 (338)
T ss_dssp             EEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHT---TCCCEEEECCTTCHHHHHHHHH----HHCC
T ss_pred             EEEEEC-CCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhc---cCCcEEEEcccCCHHHHHHHHH----hcCC
Confidence            467555 5788887777655 2367999998 333322222222222   2468999999754  3333322    2468


Q ss_pred             eEEEEeC
Q 029764           99 DYAFVDA  105 (188)
Q Consensus        99 D~i~id~  105 (188)
                      |.||.-+
T Consensus        74 d~Vih~a   80 (338)
T d1orra_          74 DSCFHLA   80 (338)
T ss_dssp             SEEEECC
T ss_pred             ceEEeec
Confidence            9998654

>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Aerobic respiration control protein ArcA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.69  E-value=2.5  Score=25.82  Aligned_cols=76  Identities=13%  Similarity=0.077  Sum_probs=49.9

Q ss_pred             CEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCcc--chHHHHHHHHhccCc
Q 029764           46 GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKV  123 (188)
Q Consensus        46 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~--~~~~~~~~~~~~L~~  123 (188)
                      .+|..||-++...+..+..++..|+.  +. ...+..+.+..+.     ...||+|++|...+  +..++++.+... ..
T Consensus         3 p~ILiVDDd~~~~~~l~~~L~~~g~~--v~-~a~~~~~al~~l~-----~~~~dlii~D~~mp~~~G~~~~~~~r~~-~~   73 (121)
T d1xhfa1           3 PHILIVEDELVTRNTLKSIFEAEGYD--VF-EATDGAEMHQILS-----EYDINLVIMDINLPGKNGLLLARELREQ-AN   73 (121)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTTTCE--EE-EESSHHHHHHHHH-----HSCCSEEEECSSCSSSCHHHHHHHHHHH-CC
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCE--EE-EECChHHHHHHHH-----hcCCCEEEeecccCCccCcHHHHHHHhc-CC
Confidence            48999999999999999999988852  33 4566666655553     36899999996432  334455555432 22


Q ss_pred             CeEEEEe
Q 029764          124 GGIAVYD  130 (188)
Q Consensus       124 gG~lv~~  130 (188)
                      -.++++.
T Consensus        74 ~pii~lt   80 (121)
T d1xhfa1          74 VALMFLT   80 (121)
T ss_dssp             CEEEEEE
T ss_pred             CcEEEEE
Confidence            2344443

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.51  E-value=1.9  Score=30.29  Aligned_cols=81  Identities=17%  Similarity=0.089  Sum_probs=52.7

Q ss_pred             CCCEEEEEcccchH---HHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcc-c
Q 029764           20 NAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYS-E   93 (188)
Q Consensus        20 ~~~~vLeiG~g~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~-~   93 (188)
                      +++++|-.|++.|-   .+..|++.   +.+|+.++.+++.++.+.+.+...+  .++..+..|..+  ....+.+.. .
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~---Ga~V~~~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~   81 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGF---GAVIHTCARNEYELNECLSKWQKKG--FQVTGSVCDASLRPEREKLMQTVSS   81 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcC--CceEEEeccCCCHHHHHHHHHHHHH
Confidence            67889998887663   33344443   7899999999999888888777655  357788877542  112221110 0


Q ss_pred             -CCCceeEEEEeC
Q 029764           94 -NEGSFDYAFVDA  105 (188)
Q Consensus        94 -~~~~~D~i~id~  105 (188)
                       ..+..|+++..+
T Consensus        82 ~~~g~idilvnnA   94 (259)
T d1xq1a_          82 MFGGKLDILINNL   94 (259)
T ss_dssp             HHTTCCSEEEEEC
T ss_pred             HhCCCcccccccc
Confidence             135789998663

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.50  E-value=3.8  Score=29.26  Aligned_cols=86  Identities=10%  Similarity=0.112  Sum_probs=52.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcC---CCCcEEEEEcchHH--HHHHHhhcc
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAG---VDHKINFIESEALS--VLDQLLKYS   92 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~--~~~~~~~~~   92 (188)
                      .+++.+|-.|++.|- +..+|+.+ ..+.+|+.++.+++.++.+.+.+....   ...++..+..|..+  .+..+.+..
T Consensus        10 L~gKvalITGas~GI-G~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~   88 (297)
T d1yxma1          10 LQGQVAIVTGGATGI-GKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST   88 (297)
T ss_dssp             TTTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence            567899998877663 33333332 137899999999998887777665431   12467788887542  122221110


Q ss_pred             -cCCCceeEEEEeC
Q 029764           93 -ENEGSFDYAFVDA  105 (188)
Q Consensus        93 -~~~~~~D~i~id~  105 (188)
                       ...+..|+++..+
T Consensus        89 ~~~~G~iDiLVnnA  102 (297)
T d1yxma1          89 LDTFGKINFLVNNG  102 (297)
T ss_dssp             HHHHSCCCEEEECC
T ss_pred             HHHhCCeEEEEeec
Confidence             1146899988663

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=84.48  E-value=5.9  Score=29.70  Aligned_cols=124  Identities=19%  Similarity=0.188  Sum_probs=74.6

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEe-CCchhHHHHHHHHHhcCCCCcEEEEE-cch
Q 029764            4 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAID-VNRETYEIGLPIIKKAGVDHKINFIE-SEA   81 (188)
Q Consensus         4 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD-~~~~~~~~a~~~~~~~~~~~~~~~~~-~d~   81 (188)
                      .+|.+..+=+.++.+..+...+-..+|.+..+..+...++++.+|++.+ +-.......++.+.+.|.  .+.+.. .+.
T Consensus        65 ~nPt~~~LE~~la~LEgg~~a~~~sSGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi--~~~~~~~~~~  142 (398)
T d1qgna_          65 GNPTTVVLEEKISALEGAESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGI--TATVIDPADV  142 (398)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTC--EEEEECSSCH
T ss_pred             CChHHHHHHHHHHHHhCCceEEEecCcchHHHHHHhhcccccccccccccccchhhhhhccccccccc--ccccccccch
Confidence            3577777778888888888899988888776666665566678888877 344455555666666664  244544 233


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCC--ccchHHHHHHHHhccCcCe-EEEEecccc
Q 029764           82 LSVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGG-IAVYDNTLW  134 (188)
Q Consensus        82 ~~~~~~~~~~~~~~~~~D~i~id~~--~~~~~~~~~~~~~~L~~gG-~lv~~~~~~  134 (188)
                      ........     .....+||+...  +.-....++.+.++.+..| .+|+||++.
T Consensus       143 ~~~~~~~~-----~~~t~~v~~EspsNP~l~v~Di~~ia~ia~~~g~~~vVDnT~a  193 (398)
T d1qgna_         143 GALELALN-----QKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFA  193 (398)
T ss_dssp             HHHHHHHH-----HSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTT
T ss_pred             hhhhhhhc-----cccceEEEccCccccccccchHHHHHHHHhhcCCEEEecceee
Confidence            33333222     257789998742  2111122344444444444 566677654

>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein PrrA, N-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.47  E-value=2.9  Score=25.46  Aligned_cols=76  Identities=11%  Similarity=0.082  Sum_probs=52.2

Q ss_pred             EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCc--cchHHHHHHHHhccCcC
Q 029764           47 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLKVG  124 (188)
Q Consensus        47 ~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~--~~~~~~~~~~~~~L~~g  124 (188)
                      +|..||-++......++.++..|+.  +. ...+..+.+..+.     ...||+|++|...  .+-.++++.+.+.-+.-
T Consensus         3 kILiVDD~~~~~~~l~~~L~~~g~~--v~-~a~~~~eal~~~~-----~~~~dlvl~D~~mP~~~G~el~~~ir~~~~~~   74 (121)
T d1ys7a2           3 RVLVVDDDSDVLASLERGLRLSGFE--VA-TAVDGAEALRSAT-----ENRPDAIVLDINMPVLDGVSVVTALRAMDNDV   74 (121)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTCE--EE-EESSHHHHHHHHH-----HSCCSEEEEESSCSSSCHHHHHHHHHHTTCCC
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHHH-----hCCCCEEEEEeeccCcccHHHHHHHHhcCCCC
Confidence            8999999999999999999988852  33 4566666655543     3689999999643  34456667775543333


Q ss_pred             eEEEEe
Q 029764          125 GIAVYD  130 (188)
Q Consensus       125 G~lv~~  130 (188)
                      -++++.
T Consensus        75 piI~lt   80 (121)
T d1ys7a2          75 PVCVLS   80 (121)
T ss_dssp             CEEEEE
T ss_pred             EEEEEE
Confidence            345554

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=84.41  E-value=1.4  Score=28.50  Aligned_cols=78  Identities=17%  Similarity=0.082  Sum_probs=43.0

Q ss_pred             EEEEEcccc-hHH-HHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029764           23 KTIEIGVFT-GYS-LLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY  100 (188)
Q Consensus        23 ~vLeiG~g~-G~~-~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~  100 (188)
                      +|.=||||. |.. -+......+ +..++.+|.+++..+...+.+   +...    ...|..+.+         ...+|+
T Consensus         3 rvgiiG~G~~~~~~~~~~l~~~~-~~~~~~~d~~~~~~~~~~~~~---~~~~----~~~~~~~ll---------~~~iD~   65 (167)
T d1xeaa1           3 KIAMIGLGDIAQKAYLPVLAQWP-DIELVLCTRNPKVLGTLATRY---RVSA----TCTDYRDVL---------QYGVDA   65 (167)
T ss_dssp             EEEEECCCHHHHHTHHHHHTTST-TEEEEEECSCHHHHHHHHHHT---TCCC----CCSSTTGGG---------GGCCSE
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHhc---cccc----ccccHHHhc---------ccccce
Confidence            577889964 322 233344444 678888999887666555443   3221    123433332         135899


Q ss_pred             EEEeCCccchHHHHHHH
Q 029764          101 AFVDADKDNYCNYHERL  117 (188)
Q Consensus       101 i~id~~~~~~~~~~~~~  117 (188)
                      |++..+.....+....+
T Consensus        66 V~I~tp~~~H~~~~~~a   82 (167)
T d1xeaa1          66 VMIHAATDVHSTLAAFF   82 (167)
T ss_dssp             EEECSCGGGHHHHHHHH
T ss_pred             ecccccccccccccccc
Confidence            99876555544443333

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=84.15  E-value=1.4  Score=25.59  Aligned_cols=80  Identities=13%  Similarity=-0.014  Sum_probs=42.8

Q ss_pred             CCCEEEEEccc-chHHHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029764           20 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   98 (188)
Q Consensus        20 ~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   98 (188)
                      ++++|+-+|-| +|.+++.++...  +.+|++.|..+.....  +.+     .....+..+...+.  .+       ..+
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~--g~~v~~~D~~~~~~~~--~~~-----~~~~~~~~~~~~~~--~~-------~~~   65 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLAR--GVTPRVMDTRMTPPGL--DKL-----PEAVERHTGSLNDE--WL-------MAA   65 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHT--TCCCEEEESSSSCTTG--GGS-----CTTSCEEESBCCHH--HH-------HHC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHC--CCEEEEeeCCcCchhH--HHH-----hhccceeecccchh--hh-------ccC
Confidence            56789999886 555555444442  6799999985542211  111     11233444432221  11       468


Q ss_pred             eEEEEeCCccchHHHHHHH
Q 029764           99 DYAFVDADKDNYCNYHERL  117 (188)
Q Consensus        99 D~i~id~~~~~~~~~~~~~  117 (188)
                      |+|++....+...+.+..+
T Consensus        66 d~vi~SPGi~~~~~~~~~a   84 (93)
T d2jfga1          66 DLIVASPGIALAHPSLSAA   84 (93)
T ss_dssp             SEEEECTTSCTTSHHHHHH
T ss_pred             CEEEECCCCCCCCHHHHHH
Confidence            9999986443333444444

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=84.02  E-value=5.1  Score=27.86  Aligned_cols=59  Identities=14%  Similarity=0.110  Sum_probs=42.8

Q ss_pred             cCCCEEEEEcccchH---HHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchH
Q 029764           19 VNAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   82 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   82 (188)
                      .++|++|-.|+..|-   .+..+++   .+.+|+.++.+++.++.+.+.+...+  .++.++..|..
T Consensus         4 L~gK~alITGas~GIG~aia~~la~---~G~~V~i~~r~~~~l~~~~~~~~~~~--~~~~~~~~D~s   65 (258)
T d1ae1a_           4 LKGTTALVTGGSKGIGYAIVEELAG---LGARVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLL   65 (258)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEeecC
Confidence            367899999986552   3333444   37899999999998888888777765  35677777764

>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: NTRC receiver domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=83.90  E-value=3.1  Score=25.35  Aligned_cols=76  Identities=12%  Similarity=0.013  Sum_probs=52.2

Q ss_pred             CCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCc--cchHHHHHHHHhccC
Q 029764           45 DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLK  122 (188)
Q Consensus        45 ~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~--~~~~~~~~~~~~~L~  122 (188)
                      .++|..||-++......++.++..|+.  +. ...+..+.+..+.     ...||+|++|...  .+-.++++.+.+. .
T Consensus         3 k~~ILIVDDd~~~~~~l~~~L~~~g~~--v~-~a~~~~~a~~~l~-----~~~~dlii~D~~mp~~~G~el~~~l~~~-~   73 (123)
T d1krwa_           3 RGIVWVVDDDSSIRWVLERALAGAGLT--CT-TFENGNEVLAALA-----SKTPDVLLSDIRMPGMDGLALLKQIKQR-H   73 (123)
T ss_dssp             CCEEEEESSSHHHHHHHHHHHHHTTCE--EE-EESSSHHHHHHHT-----TCCCSEEEECCSSSSSTTHHHHHHHHHH-S
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCCE--EE-EeCCHHHHHHHHH-----hCCCCEEEehhhcCCchHHHHHHHHHHh-C
Confidence            357999999999999999999988852  43 4566666655552     4689999999643  2345666766543 4


Q ss_pred             cCeEEEE
Q 029764          123 VGGIAVY  129 (188)
Q Consensus       123 ~gG~lv~  129 (188)
                      +.--+++
T Consensus        74 ~~~piI~   80 (123)
T d1krwa_          74 PMLPVII   80 (123)
T ss_dssp             SSCCEEE
T ss_pred             CCCeEEE
Confidence            4444443

>d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator DrrB
species: Thermotoga maritima [TaxId: 2336]

Probab=83.85  E-value=3.1  Score=25.27  Aligned_cols=72  Identities=10%  Similarity=0.157  Sum_probs=47.2

Q ss_pred             EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCcc--chHHHHHHHHhccCcC
Q 029764           47 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVG  124 (188)
Q Consensus        47 ~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~--~~~~~~~~~~~~L~~g  124 (188)
                      +|..||-++...+..++.++..|   .+. ...++.+.+..       ...||+|++|...+  +..+++..+.+. .+.
T Consensus         4 kILiVDDd~~~~~~l~~~L~~~g---~v~-~~~~~~~al~~-------~~~~dlillD~~mP~~~G~~~~~~lr~~-~~~   71 (120)
T d1p2fa2           4 KIAVVDDDKNILKKVSEKLQQLG---RVK-TFLTGEDFLND-------EEAFHVVVLDVMLPDYSGYEICRMIKET-RPE   71 (120)
T ss_dssp             EEEEECSCHHHHHHHHHHHTTTE---EEE-EESSHHHHHHC-------CSCCSEEEEESBCSSSBHHHHHHHHHHH-CTT
T ss_pred             EEEEEECCHHHHHHHHHHHHhCC---EEE-EECCHHHHHhc-------CCCCCEEEEeCcccccchhHHHHHHhhc-CCC
Confidence            78899999999999999987765   233 34566555432       46899999996432  345566666443 344


Q ss_pred             e-EEEEe
Q 029764          125 G-IAVYD  130 (188)
Q Consensus       125 G-~lv~~  130 (188)
                      - ++++.
T Consensus        72 ~~ii~it   78 (120)
T d1p2fa2          72 TWVILLT   78 (120)
T ss_dssp             SEEEEEE
T ss_pred             CcEEEEe
Confidence            4 44443

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.82  E-value=1.6  Score=32.21  Aligned_cols=77  Identities=17%  Similarity=0.113  Sum_probs=44.2

Q ss_pred             CCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCc-----------------hhHHHHHHHHHhcCCCCcEEEEEcchH
Q 029764           21 AKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNR-----------------ETYEIGLPIIKKAGVDHKINFIESEAL   82 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~-----------------~~~~~a~~~~~~~~~~~~~~~~~~d~~   82 (188)
                      +++||-.|. +|+.+..+++.+ ..+.+|+++|.-.                 ...+..+. ..... ..+++++.+|..
T Consensus         1 g~kILVTGa-tGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~i~~~~~Dl~   77 (393)
T d1i24a_           1 GSRVMVIGG-DGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISR-WKALT-GKSIELYVGDIC   77 (393)
T ss_dssp             -CEEEEETT-TSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHH-HHHHH-CCCCEEEESCTT
T ss_pred             CCEEEEECC-CcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHH-HHhhc-CCCcEEEEccCC
Confidence            367887775 898888877766 2367899998311                 11111111 11111 246899999975


Q ss_pred             H--HHHHHhhcccCCCceeEEEEe
Q 029764           83 S--VLDQLLKYSENEGSFDYAFVD  104 (188)
Q Consensus        83 ~--~~~~~~~~~~~~~~~D~i~id  104 (188)
                      +  .+.....    ...+|.|+--
T Consensus        78 d~~~l~~~~~----~~~~d~ViHl   97 (393)
T d1i24a_          78 DFEFLAESFK----SFEPDSVVHF   97 (393)
T ss_dssp             SHHHHHHHHH----HHCCSEEEEC
T ss_pred             CHHHHHHHHH----hhcchheecc
Confidence            4  3333322    1368988753

>d1jbea_ c.23.1.1 (A:) CheY protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Escherichia coli [TaxId: 562]

Probab=83.56  E-value=3.3  Score=25.39  Aligned_cols=68  Identities=12%  Similarity=0.230  Sum_probs=49.2

Q ss_pred             CCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCc--cchHHHHHHHHh
Q 029764           45 DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMK  119 (188)
Q Consensus        45 ~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~--~~~~~~~~~~~~  119 (188)
                      +.+|..||-++...+..++.++..|+.. +. ...++.+.+..+.     ...||+|++|...  .+..++++.+.+
T Consensus         4 ~lriLvVDD~~~~r~~i~~~L~~~g~~~-v~-~a~~g~~a~~~~~-----~~~~dlii~D~~mP~~dG~el~~~ir~   73 (128)
T d1jbea_           4 ELKFLVVDDFSTMRRIVRNLLKELGFNN-VE-EAEDGVDALNKLQ-----AGGYGFVISDWNMPNMDGLELLKTIRA   73 (128)
T ss_dssp             TCCEEEECSCHHHHHHHHHHHHHTTCCC-EE-EESSHHHHHHHHT-----TCCCCEEEEESCCSSSCHHHHHHHHHC
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHCCCcE-EE-EecCchHHHHHHh-----cCCCCEEEEecccccCCHHHHHHHHHh
Confidence            5689999999999999999999888642 33 4566666554442     4789999999643  344566677654

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.22  E-value=5.4  Score=27.53  Aligned_cols=76  Identities=11%  Similarity=0.108  Sum_probs=49.0

Q ss_pred             cCCCEEEEEcccchH---HHHHHHhhCCCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHHh
Q 029764           19 VNAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLL   89 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~   89 (188)
                      .+++.+|-.|++.|-   .+..|++.   +.+|+.+|.+++.++.+.+.+.     ++..++..|..+      .+.+..
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~---G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~   75 (244)
T d1nffa_           4 LTGKVALVSGGARGMGASHVRAMVAE---GAKVVFGDILDEEGKAMAAELA-----DAARYVHLDVTQPAQWKAAVDTAV   75 (244)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTG-----GGEEEEECCTTCHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHhh-----CcceEEEeecCCHHHHHHHHHHHH
Confidence            467889999987663   33344443   7899999999987766665542     457778877543      222222


Q ss_pred             hcccCCCceeEEEEeC
Q 029764           90 KYSENEGSFDYAFVDA  105 (188)
Q Consensus        90 ~~~~~~~~~D~i~id~  105 (188)
                      +.   .+..|+++-.+
T Consensus        76 ~~---~g~idilinnA   88 (244)
T d1nffa_          76 TA---FGGLHVLVNNA   88 (244)
T ss_dssp             HH---HSCCCEEEECC
T ss_pred             HH---hCCCeEEEECC
Confidence            22   46799888653

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=82.88  E-value=3.9  Score=25.72  Aligned_cols=37  Identities=19%  Similarity=0.038  Sum_probs=26.3

Q ss_pred             CEEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHH
Q 029764           22 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYE   59 (188)
Q Consensus        22 ~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~   59 (188)
                      ++|.=|| |.|..+.+||+.+. .+..|+..|.++....
T Consensus        10 ~kI~iIG-g~G~mG~~la~~L~~~G~~V~~~d~~~~~~~   47 (152)
T d2pv7a2          10 HKIVIVG-GYGKLGGLFARYLRASGYPISILDREDWAVA   47 (152)
T ss_dssp             CCEEEET-TTSHHHHHHHHHHHTTTCCEEEECTTCGGGH
T ss_pred             CeEEEEc-CCCHHHHHHHHHHHHcCCCcEeccccccccc
Confidence            4788888 35777777777663 3578999998876543

>d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Sinorhizobium meliloti, CheY2 [TaxId: 382]

Probab=82.87  E-value=3.6  Score=25.29  Aligned_cols=68  Identities=6%  Similarity=0.052  Sum_probs=47.7

Q ss_pred             CCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCcc--chHHHHHHHHh
Q 029764           45 DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMK  119 (188)
Q Consensus        45 ~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~--~~~~~~~~~~~  119 (188)
                      ..+|..||-++......++.++..|+.. +. ...+..+.+..+.     ...||+|++|...+  +..++++.+.+
T Consensus         6 ~~kILiVDD~~~~~~~l~~~L~~~g~~~-v~-~a~~~~~al~~l~-----~~~~dlii~D~~mP~~~G~el~~~lr~   75 (129)
T d1p6qa_           6 KIKVLIVDDQVTSRLLLGDALQQLGFKQ-IT-AAGDGEQGMKIMA-----QNPHHLVISDFNMPKMDGLGLLQAVRA   75 (129)
T ss_dssp             CCCEEEECSSHHHHHHHHHHHHTTTCSC-EE-CCSSHHHHHHHHH-----TSCCSEEEECSSSCSSCHHHHHHHHTT
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCCeE-EE-EECCHHHHHHHHH-----hCCCCeEEeeeecCCCChHHHHHHHHh
Confidence            4589999999999999999999888632 22 2456655554442     36899999997543  34566666643

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=82.84  E-value=2.3  Score=25.68  Aligned_cols=51  Identities=22%  Similarity=0.152  Sum_probs=34.3

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCc--------hhHHHHHHHHHhcCC
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNR--------ETYEIGLPIIKKAGV   70 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~--------~~~~~a~~~~~~~~~   70 (188)
                      ...|++++-||.  |+.++.+|..+. .+.+|+.++..+        +..+.+++.+++.|.
T Consensus        19 ~~~p~~v~IiGg--G~ig~E~A~~l~~~G~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~GI   78 (117)
T d1ebda2          19 GEVPKSLVVIGG--GYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGV   78 (117)
T ss_dssp             SSCCSEEEEECC--SHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTC
T ss_pred             hhcCCeEEEECC--CccceeeeeeecccccEEEEEEecceecccccchhHHHHHHHHHhcCC
Confidence            345689999998  555555555442 267999999654        456666777777663

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.80  E-value=1  Score=29.85  Aligned_cols=34  Identities=15%  Similarity=0.175  Sum_probs=27.5

Q ss_pred             CceeEEEEeCCccchHHHHHHHHhccCcCeEEEE
Q 029764           96 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  129 (188)
Q Consensus        96 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  129 (188)
                      ...|+|++.-+.......++++.+.++++-.+++
T Consensus        70 ~~ad~Ii~avps~~~~~~~~~l~~~l~~~~ii~~  103 (180)
T d1txga2          70 ENAEVVLLGVSTDGVLPVMSRILPYLKDQYIVLI  103 (180)
T ss_dssp             TTCSEEEECSCGGGHHHHHHHHTTTCCSCEEEEC
T ss_pred             hccchhhcccchhhhHHHHHhhccccccceeccc
Confidence            5689999988888888999999999987655544

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.67  E-value=5.7  Score=28.36  Aligned_cols=82  Identities=15%  Similarity=0.127  Sum_probs=47.6

Q ss_pred             HcCCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCch----hHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcc
Q 029764           18 LVNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRE----TYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS   92 (188)
Q Consensus        18 ~~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~----~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~   92 (188)
                      ..++++||-.| |+|+.+..+++.+ ..+-+|+++|....    .++..+....... ..+++++.+|..+.......  
T Consensus        13 ~~~~k~iLVTG-~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~d~~~~~~~--   88 (341)
T d1sb8a_          13 PAQPKVWLITG-VAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQ-WSNFKFIQGDIRNLDDCNNA--   88 (341)
T ss_dssp             HHSCCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHH-HTTEEEEECCTTSHHHHHHH--
T ss_pred             CCCCCEEEEec-CCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhcc-cCCeeEEeeccccccccccc--
Confidence            34567888886 5899888887766 23678999995222    2222222211111 14688999988764322211  


Q ss_pred             cCCCceeEEEEeC
Q 029764           93 ENEGSFDYAFVDA  105 (188)
Q Consensus        93 ~~~~~~D~i~id~  105 (188)
                        ....+.++..+
T Consensus        89 --~~~~~~v~~~~   99 (341)
T d1sb8a_          89 --CAGVDYVLHQA   99 (341)
T ss_dssp             --HTTCSEEEECC
T ss_pred             --ccccccccccc
Confidence              24556665443

>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein DctD, receiver domain
species: Sinorhizobium meliloti [TaxId: 382]

Probab=82.62  E-value=3.9  Score=25.53  Aligned_cols=75  Identities=13%  Similarity=0.125  Sum_probs=52.1

Q ss_pred             EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCcc--chHHHHHHHHhccCcC
Q 029764           47 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVG  124 (188)
Q Consensus        47 ~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~--~~~~~~~~~~~~L~~g  124 (188)
                      +|..||-++......+..++..|+.  +. ...++.+.+..+     ....||+|++|...+  +-.++++.+.+. .++
T Consensus         2 ~ILiVDDd~~~~~~l~~~L~~~g~~--v~-~~~~~~~al~~l-----~~~~~dlil~D~~mP~~~G~el~~~lr~~-~~~   72 (140)
T d1qkka_           2 SVFLIDDDRDLRKAMQQTLELAGFT--VS-SFASATEALAGL-----SADFAGIVISDIRMPGMDGLALFRKILAL-DPD   72 (140)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTCE--EE-EESCHHHHHHTC-----CTTCCSEEEEESCCSSSCHHHHHHHHHHH-CTT
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCCE--EE-EeCChHHHHHHH-----hccCcchHHHhhccCCCCHHHHHHHHHHh-CCC
Confidence            7889999999999999999988752  33 346666666554     247899999996433  445677777654 444


Q ss_pred             e-EEEEe
Q 029764          125 G-IAVYD  130 (188)
Q Consensus       125 G-~lv~~  130 (188)
                      - ++++.
T Consensus        73 ~pvI~lT   79 (140)
T d1qkka_          73 LPMILVT   79 (140)
T ss_dssp             SCEEEEE
T ss_pred             CcEEEEE
Confidence            3 55554

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.57  E-value=5  Score=26.70  Aligned_cols=38  Identities=13%  Similarity=0.160  Sum_probs=23.4

Q ss_pred             EEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHH
Q 029764           23 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGL   62 (188)
Q Consensus        23 ~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~   62 (188)
                      +|--||+|  +.+..+|..+. .+-+|+++|.+++.++..+
T Consensus         2 kI~ViGlG--~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln   40 (202)
T d1mv8a2           2 RISIFGLG--YVGAVCAGCLSARGHEVIGVDVSSTKIDLIN   40 (202)
T ss_dssp             EEEEECCS--TTHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             EEEEECCC--HhHHHHHHHHHhCCCcEEEEeCCHHHHHHhc
Confidence            35567775  43333333221 2579999999998776554

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.51  E-value=4.7  Score=27.95  Aligned_cols=77  Identities=12%  Similarity=0.057  Sum_probs=47.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHHhhc
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKY   91 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~   91 (188)
                      .++|.+|-.|++.| .+..+|+.+ ..+.+|+.+|.+++.++...+.+      ++..++..|..+      .+.+..++
T Consensus         4 l~GK~alITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~------~~~~~~~~Dvs~~~~v~~~~~~~~~~   76 (250)
T d1ydea1           4 YAGKVVVVTGGGRG-IGAGIVRAFVNSGARVVICDKDESGGRALEQEL------PGAVFILCDVTQEDDVKTLVSETIRR   76 (250)
T ss_dssp             TTTCEEEEETCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC------TTEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc------CCCeEEEccCCCHHHHHHHHHHHHHh
Confidence            35788999998766 333333332 13789999999988776655432      246777777532      22222222


Q ss_pred             ccCCCceeEEEEeC
Q 029764           92 SENEGSFDYAFVDA  105 (188)
Q Consensus        92 ~~~~~~~D~i~id~  105 (188)
                         .+..|.++..+
T Consensus        77 ---~g~iDilVnnA   87 (250)
T d1ydea1          77 ---FGRLDCVVNNA   87 (250)
T ss_dssp             ---HSCCCEEEECC
T ss_pred             ---cCCCCEEEecc
Confidence               47899988653

>d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Methylesterase CheB, N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=82.49  E-value=4  Score=25.47  Aligned_cols=76  Identities=16%  Similarity=0.129  Sum_probs=50.3

Q ss_pred             CEEEEEeCCchhHHHHHHHHHhcCCCCcEEE-EEcchHHHHHHHhhcccCCCceeEEEEeCCcc--chHHHHHHHHhccC
Q 029764           46 GQITAIDVNRETYEIGLPIIKKAGVDHKINF-IESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLK  122 (188)
Q Consensus        46 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~--~~~~~~~~~~~~L~  122 (188)
                      .+|..||-++...+..++.++..|..  ..+ ...|..+.+..+.     ...+|+|++|...+  +-.++++.+.+. .
T Consensus         4 irVLiVDD~~~~r~~l~~~L~~~g~~--~~v~~a~~g~~al~~~~-----~~~pDlvllDi~MP~~dG~e~~~~ir~~-~   75 (140)
T d1a2oa1           4 IRVLSVDDSALMRQIMTEIINSHSDM--EMVATAPDPLVARDLIK-----KFNPDVLTLDVEMPRMDGLDFLEKLMRL-R   75 (140)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHTSTTE--EEEEEESSHHHHHHHHH-----HHCCSEEEEECCCSSSCHHHHHHHHHHS-S
T ss_pred             CEEEEEeCCHHHHHHHHHHHHhCCCe--EEEEEECCHHHHHHHHH-----hcCCCEEEEcCCCCCCCHHHHHHHHHHh-C
Confidence            48999999999999999999876621  222 3466666555443     25799999996433  445666776544 4


Q ss_pred             cCeEEEE
Q 029764          123 VGGIAVY  129 (188)
Q Consensus       123 ~gG~lv~  129 (188)
                      +.-.+++
T Consensus        76 ~~~~i~i   82 (140)
T d1a2oa1          76 PMPVVMV   82 (140)
T ss_dssp             CCCEEEE
T ss_pred             CCCcEEE
Confidence            5544443

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=82.33  E-value=4.7  Score=26.17  Aligned_cols=94  Identities=13%  Similarity=0.032  Sum_probs=54.6

Q ss_pred             EEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEE
Q 029764           24 TIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF  102 (188)
Q Consensus        24 vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~  102 (188)
                      |-=||+  |..+..||..+- .+.+|++.|.+++..+...+.-.    ......-.....+....       ....|.++
T Consensus         5 Ig~IGl--G~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~-------~~~~~~ii   71 (176)
T d2pgda2           5 IALIGL--AVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEA----KGTKVLGAHSLEEMVSK-------LKKPRRII   71 (176)
T ss_dssp             EEEECC--SHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTT----TTSSCEECSSHHHHHHH-------BCSSCEEE
T ss_pred             EEEEeE--hHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhcc----ccccccchhhhhhhhhh-------hcccceEE
Confidence            445666  555555555542 25689999999988776655321    11111222233333322       25567777


Q ss_pred             EeC-CccchHHHHHHHHhccCcCeEEEEe
Q 029764          103 VDA-DKDNYCNYHERLMKLLKVGGIAVYD  130 (188)
Q Consensus       103 id~-~~~~~~~~~~~~~~~L~~gG~lv~~  130 (188)
                      +.. .........+.+...+++|.+++-.
T Consensus        72 ~~~~~~~~v~~v~~~l~~~~~~g~iiid~  100 (176)
T d2pgda2          72 LLVKAGQAVDNFIEKLVPLLDIGDIIIDG  100 (176)
T ss_dssp             ECSCTTHHHHHHHHHHHHHCCTTCEEEEC
T ss_pred             EecCchHHHHHHHHHHHhccccCcEEEec
Confidence            654 3345566778888899988766644

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=82.16  E-value=2.2  Score=28.49  Aligned_cols=83  Identities=11%  Similarity=0.095  Sum_probs=49.5

Q ss_pred             EEEEEcccchHHHHHHHhhCCC-CCEEEEEeCCchhHHHHHHHHHh------cCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029764           23 KTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKK------AGVDHKINFIESEALSVLDQLLKYSENE   95 (188)
Q Consensus        23 ~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~------~~~~~~~~~~~~d~~~~~~~~~~~~~~~   95 (188)
                      +|.-||+|.-.+++.  ..+.. +.+|+..+.+++.++..++.-..      ..+++++.+ ..|..+.+          
T Consensus         9 KI~ViGaG~wGtAlA--~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~-t~~l~~a~----------   75 (189)
T d1n1ea2           9 KAVVFGSGAFGTALA--MVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITF-TSDVEKAY----------   75 (189)
T ss_dssp             EEEEECCSHHHHHHH--HHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEE-ESCHHHHH----------
T ss_pred             eEEEECCCHHHHHHH--HHHHHcCCeEEEEEecHHHHHHHhhccccccccccccccccccc-chhhhhcc----------
Confidence            688899966555444  33322 34788889999888776654221      123345553 34444332          


Q ss_pred             CceeEEEEeCCccchHHHHHHHH
Q 029764           96 GSFDYAFVDADKDNYCNYHERLM  118 (188)
Q Consensus        96 ~~~D~i~id~~~~~~~~~~~~~~  118 (188)
                      ...|+|++.-+......+++++.
T Consensus        76 ~~ad~iiiavPs~~~~~~~~~~~   98 (189)
T d1n1ea2          76 NGAEIILFVIPTQFLRGFFEKSG   98 (189)
T ss_dssp             TTCSCEEECSCHHHHHHHHHHHC
T ss_pred             CCCCEEEEcCcHHHHHHHHHHHH
Confidence            45689988766555556666654

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=82.13  E-value=2.1  Score=25.75  Aligned_cols=90  Identities=11%  Similarity=0.013  Sum_probs=50.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   97 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   97 (188)
                      .++++||-+|.|  ..+..-++.+ ..+++++.++.....  ..++...    ..+++++.....+.  .       ...
T Consensus        10 l~~k~vlVvG~G--~va~~ka~~ll~~ga~v~v~~~~~~~--~~~~~~~----~~~i~~~~~~~~~~--d-------l~~   72 (113)
T d1pjqa1          10 LRDRDCLIVGGG--DVAERKARLLLEAGARLTVNALTFIP--QFTVWAN----EGMLTLVEGPFDET--L-------LDS   72 (113)
T ss_dssp             CBTCEEEEECCS--HHHHHHHHHHHHTTBEEEEEESSCCH--HHHHHHT----TTSCEEEESSCCGG--G-------GTT
T ss_pred             eCCCEEEEECCC--HHHHHHHHHHHHCCCeEEEEeccCCh--HHHHHHh----cCCceeeccCCCHH--H-------hCC
Confidence            357899999985  4444434332 126788888765432  2222221    13577776554321  1       267


Q ss_pred             eeEEEEeCCccchHHHHHHHHhccCcCeEEE
Q 029764           98 FDYAFVDADKDNYCNYHERLMKLLKVGGIAV  128 (188)
Q Consensus        98 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv  128 (188)
                      +++|++.....   ..-..+....++.|++|
T Consensus        73 ~~lv~~at~d~---~~n~~i~~~a~~~~ilV  100 (113)
T d1pjqa1          73 CWLAIAATDDD---TVNQRVSDAAESRRIFC  100 (113)
T ss_dssp             CSEEEECCSCH---HHHHHHHHHHHHTTCEE
T ss_pred             CcEEeecCCCH---HHHHHHHHHHHHcCCEE
Confidence            89999875333   33345556666777665

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=82.00  E-value=6.3  Score=27.44  Aligned_cols=84  Identities=18%  Similarity=0.190  Sum_probs=50.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCc-hhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcc-c
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNR-ETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYS-E   93 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~-~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~-~   93 (188)
                      .+++.+|-.|.+.|- +..+|+.+. .+.+|+.++.+. +..+.+.+.++..+  .++.++..|..+  .+.++.+.. .
T Consensus         5 L~gK~alITGas~GI-G~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~   81 (261)
T d1geea_           5 LEGKVVVITGSSTGL-GKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVG--GEAIAVKGDVTVESDVINLVQSAIK   81 (261)
T ss_dssp             GTTCEEEETTCSSHH-HHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence            467888988877663 333333321 268999999875 45666666676655  357778877643  122221110 1


Q ss_pred             CCCceeEEEEeC
Q 029764           94 NEGSFDYAFVDA  105 (188)
Q Consensus        94 ~~~~~D~i~id~  105 (188)
                      ..+..|+++..+
T Consensus        82 ~~G~iDiLVnnA   93 (261)
T d1geea_          82 EFGKLDVMINNA   93 (261)
T ss_dssp             HHSCCCEEEECC
T ss_pred             HhCCCCEeeccc
Confidence            246899988653

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.92  E-value=3.4  Score=28.50  Aligned_cols=75  Identities=11%  Similarity=0.015  Sum_probs=47.1

Q ss_pred             CCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCC
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEG   96 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~   96 (188)
                      +++++|-.|++.| .+..+|+.+ ..+.+|+.++.+++.++...+.+   +   .+..+..|..+  .+.+..++   .+
T Consensus         4 ~GK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~---~---~~~~~~~Dv~~~~~v~~~~~~---~g   73 (242)
T d1cyda_           4 SGLRALVTGAGKG-IGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC---P---GIEPVCVDLGDWDATEKALGG---IG   73 (242)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS---T---TCEEEECCTTCHHHHHHHHTT---CC
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc---C---CCeEEEEeCCCHHHHHHHHHH---cC
Confidence            5788998887665 333333332 13789999999887666554432   2   36677777643  33444333   57


Q ss_pred             ceeEEEEe
Q 029764           97 SFDYAFVD  104 (188)
Q Consensus        97 ~~D~i~id  104 (188)
                      +.|+++-.
T Consensus        74 ~iDilVnn   81 (242)
T d1cyda_          74 PVDLLVNN   81 (242)
T ss_dssp             CCSEEEEC
T ss_pred             CCeEEEEC
Confidence            89988865

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=81.73  E-value=5.7  Score=27.49  Aligned_cols=80  Identities=20%  Similarity=0.180  Sum_probs=47.5

Q ss_pred             CCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcc-cCC
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYS-ENE   95 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~-~~~   95 (188)
                      +++++|-.|.+.|- +..+|+.+ ..+.+|+.+|.+++.++.+.+.+   +  .++..+..|..+  .+..+.+.. ...
T Consensus         4 ~gK~alVTGas~GI-G~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~---~--~~~~~~~~Dvt~~~~v~~~~~~~~~~~   77 (256)
T d1k2wa_           4 DGKTALITGSARGI-GRAFAEAYVREGARVAIADINLEAARATAAEI---G--PAACAIALDVTDQASIDRCVAELLDRW   77 (256)
T ss_dssp             TTEEEEEETCSSHH-HHHHHHHHHHTTEEEEEEESCHHHHHHHHHHH---C--TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---C--CceEEEEeeCCCHHHHHHHHHHHHHHh
Confidence            56788988876653 33333332 13789999999988766655543   3  457777877542  122221110 114


Q ss_pred             CceeEEEEeC
Q 029764           96 GSFDYAFVDA  105 (188)
Q Consensus        96 ~~~D~i~id~  105 (188)
                      +..|+++..+
T Consensus        78 g~iDilVnnA   87 (256)
T d1k2wa_          78 GSIDILVNNA   87 (256)
T ss_dssp             SCCCEEEECC
T ss_pred             CCccEEEeec
Confidence            7899888663

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=81.65  E-value=3.2  Score=28.94  Aligned_cols=82  Identities=15%  Similarity=0.133  Sum_probs=48.3

Q ss_pred             cCCCEEEEEcccchH---HHHHHHhhCCCCCEEEEEeCC-chhHHHHHHHHHh-cCCCCcEEEEEcchHH--HHHHHhhc
Q 029764           19 VNAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVN-RETYEIGLPIIKK-AGVDHKINFIESEALS--VLDQLLKY   91 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~---~~~~la~~~~~~~~v~~iD~~-~~~~~~a~~~~~~-~~~~~~~~~~~~d~~~--~~~~~~~~   91 (188)
                      .+++.+|-.|++.|-   .+..|++.   +.+|+.++.+ ++.++.+.+.+.. .+  .++.++..|..+  .+..+.++
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~---Ga~V~~~~r~~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~   76 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQ---GADIVLNGFGDAAEIEKVRAGLAAQHG--VKVLYDGADLSKGEAVRGLVDN   76 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHT---TCEEEEECCSCHHHHHHHHHHHHHHHT--SCEEEECCCTTSHHHHHHHHHH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHC---CCEEEEEeCCcHHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHH
Confidence            467888887776653   33334443   7899999986 4566666655543 33  357778877643  12222111


Q ss_pred             c-cCCCceeEEEEeC
Q 029764           92 S-ENEGSFDYAFVDA  105 (188)
Q Consensus        92 ~-~~~~~~D~i~id~  105 (188)
                      . ...+..|+++..+
T Consensus        77 ~~~~~G~iDiLVnnA   91 (260)
T d1x1ta1          77 AVRQMGRIDILVNNA   91 (260)
T ss_dssp             HHHHHSCCSEEEECC
T ss_pred             HHHHhCCCcEEEeec
Confidence            0 1147899988663

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=81.59  E-value=2.2  Score=27.31  Aligned_cols=41  Identities=15%  Similarity=0.078  Sum_probs=27.7

Q ss_pred             CCEEEEEcccchHHHHHHHhhCC-CCCEEEEEeCCchhHHHHHH
Q 029764           21 AKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLP   63 (188)
Q Consensus        21 ~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~   63 (188)
                      .++||=+|+  |..+..+|+.+. .+.+|+.+|.+.+..+...+
T Consensus         2 ~K~IliiGa--G~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~   43 (182)
T d1e5qa1           2 TKSVLMLGS--GFVTRPTLDVLTDSGIKVTVACRTLESAKKLSA   43 (182)
T ss_dssp             CCEEEEECC--STTHHHHHHHHHTTTCEEEEEESCHHHHHHHHT
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCCCEEEEEECChHHHHHHHh
Confidence            468888988  555555555443 25689999999886665443

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=81.55  E-value=6.3  Score=27.18  Aligned_cols=74  Identities=16%  Similarity=0.142  Sum_probs=44.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHHhhc
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKY   91 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~   91 (188)
                      .+++.+|-.|++.| .+..+|+.+ ..+.+|+.+|.+++..+.+++    .+    ..++..|..+      .+.+..+.
T Consensus         3 l~GK~alITGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~----~~----~~~~~~Dv~~~~~v~~~~~~~~~~   73 (248)
T d2d1ya1           3 FAGKGVLVTGGARG-IGRAIAQAFAREGALVALCDLRPEGKEVAEA----IG----GAFFQVDLEDERERVRFVEEAAYA   73 (248)
T ss_dssp             TTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSTTHHHHHHH----HT----CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----cC----CeEEEEeCCCHHHHHHHHHHHHHh
Confidence            46788999887655 333333333 137899999999886654433    22    3456666542      22232222


Q ss_pred             ccCCCceeEEEEe
Q 029764           92 SENEGSFDYAFVD  104 (188)
Q Consensus        92 ~~~~~~~D~i~id  104 (188)
                         .++.|+++-.
T Consensus        74 ---~G~iDiLVnn   83 (248)
T d2d1ya1          74 ---LGRVDVLVNN   83 (248)
T ss_dssp             ---HSCCCEEEEC
T ss_pred             ---cCCCCeEEEe
Confidence               4789988865

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=81.41  E-value=3.3  Score=25.16  Aligned_cols=49  Identities=18%  Similarity=0.161  Sum_probs=35.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCC-CCCEEEEEeC--------CchhHHHHHHHHHhcC
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDV--------NRETYEIGLPIIKKAG   69 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~--------~~~~~~~a~~~~~~~~   69 (188)
                      ..|++++=||.  |+.++.+|..+. -+.+|+.++.        +++....+++.+++.|
T Consensus        20 ~~p~~i~IiG~--G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~~d~ei~~~l~~~l~~~G   77 (119)
T d3lada2          20 NVPGKLGVIGA--GVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQG   77 (119)
T ss_dssp             SCCSEEEEECC--SHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTT
T ss_pred             cCCCeEEEECC--ChHHHHHHHHHHHcCCceEEEEeecccCCcccchhHHHHHHHHHhcC
Confidence            35689999998  677777766553 2678999885        5566677788887766

>d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator for cyanobacterial phytochrome
species: Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]

Probab=80.90  E-value=4.7  Score=25.28  Aligned_cols=86  Identities=15%  Similarity=0.185  Sum_probs=53.2

Q ss_pred             CCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcc--cCCCceeEEEEeCCcc--chHHHHHHHHhc
Q 029764           45 DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS--ENEGSFDYAFVDADKD--NYCNYHERLMKL  120 (188)
Q Consensus        45 ~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~D~i~id~~~~--~~~~~~~~~~~~  120 (188)
                      ..+|..||-++......++.++..++...+. ...|..+.+..+....  .....||+|++|...+  +-.++++++.+.
T Consensus         3 pk~ILiVdD~~~~~~~l~~~L~~~g~~~~v~-~a~~g~~Al~~l~~~~~~~~~~~pdlIllD~~mP~~~G~el~~~ir~~   81 (144)
T d1i3ca_           3 PKVILLVEDSKADSRLVQEVLKTSTIDHELI-ILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQN   81 (144)
T ss_dssp             CEEEEEECCCHHHHHHHHHHHHSCCSCEEEE-EECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHC
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCCCeEEE-EECCHHHHHHHHHhchhhhccCCCCEEEEECccccccchHHHHHHHhC
Confidence            4589999999999999999998877542232 3456666555443210  1134699999996433  345666766542


Q ss_pred             --cCcCeEEEEec
Q 029764          121 --LKVGGIAVYDN  131 (188)
Q Consensus       121 --L~~gG~lv~~~  131 (188)
                        ++.=-++++..
T Consensus        82 ~~~~~iPvi~lT~   94 (144)
T d1i3ca_          82 PDLKRIPVVVLTT   94 (144)
T ss_dssp             TTTTTSCEEEEES
T ss_pred             cccCCCeEEEEEC
Confidence              22222566543

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=80.82  E-value=4.3  Score=27.94  Aligned_cols=77  Identities=12%  Similarity=0.086  Sum_probs=45.4

Q ss_pred             CCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcc-cCC
Q 029764           20 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYS-ENE   95 (188)
Q Consensus        20 ~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~-~~~   95 (188)
                      +++.+|-.|++.| .+..+|+.+ ..+.+|+.+|.+++.++.+.+.+       +...+..|..+  .+.++.++. ...
T Consensus         4 ~gK~~lITGas~G-IG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~-------~~~~~~~Dv~~~~~v~~~~~~~~~~~   75 (242)
T d1ulsa_           4 KDKAVLITGAAHG-IGRATLELFAKEGARLVACDIEEGPLREAAEAV-------GAHPVVMDVADPASVERGFAEALAHL   75 (242)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-------TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-------CCeEEEEecCCHHHHHHHHHHHHHhc
Confidence            5688999888766 333333333 13789999999988776655432       24566777532  122221110 114


Q ss_pred             CceeEEEEe
Q 029764           96 GSFDYAFVD  104 (188)
Q Consensus        96 ~~~D~i~id  104 (188)
                      +.+|+++-.
T Consensus        76 g~iDilVnn   84 (242)
T d1ulsa_          76 GRLDGVVHY   84 (242)
T ss_dssp             SSCCEEEEC
T ss_pred             CCceEEEEC
Confidence            689988765

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=80.37  E-value=7.9  Score=28.78  Aligned_cols=123  Identities=15%  Similarity=0.169  Sum_probs=72.9

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccchHHHHHHHhhCCCCCEEEEEeC-CchhHHHHHHHHHhcCCCCcEEEEEc-ch
Q 029764            4 TAPDAGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDV-NRETYEIGLPIIKKAGVDHKINFIES-EA   81 (188)
Q Consensus         4 ~~~~~~~~l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~-~~~~~~~a~~~~~~~~~~~~~~~~~~-d~   81 (188)
                      .+|.+..+=+.++.+..+...+-..+|....+..+....+++.+|++.+. -.......++.+...+.  .+.+... |.
T Consensus        48 ~nPt~~~le~~la~LEgg~~a~~~sSGMaAi~~~l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~--~~~~~d~~d~  125 (384)
T d1cs1a_          48 GNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCY--RVLFVDQGDE  125 (384)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSC--EEEEECTTCH
T ss_pred             CCHHHHHHHHHHHHHhCCCceEEecChHHHHHHHHhhcccccceecccccccchhhhhhhhhhccccc--ccccccCCCH
Confidence            46777778888888888888998888887777666666666788888763 33444555555554442  2444432 33


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCC--ccchHHHHHHHHhccC-cCeEEEEecccc
Q 029764           82 LSVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLK-VGGIAVYDNTLW  134 (188)
Q Consensus        82 ~~~~~~~~~~~~~~~~~D~i~id~~--~~~~~~~~~~~~~~L~-~gG~lv~~~~~~  134 (188)
                      ......+      .....+||+...  +......++.+.++.+ .|..+|+||++.
T Consensus       126 ~~~~~~~------~~~t~~v~~EspsNP~l~v~Di~~i~~ia~~~g~~~vVDNT~a  175 (384)
T d1cs1a_         126 QALRAAL------AEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFL  175 (384)
T ss_dssp             HHHHHHH------HTCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTT
T ss_pred             HHHHhhc------cccccEEEEeccccccceeccHHHHhhhhhhcCcEEEEecccc
Confidence            3332233      256689999842  2111112333333333 455677777664

>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: DNA-binding response regulator MicA, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=80.21  E-value=4.3  Score=24.42  Aligned_cols=75  Identities=15%  Similarity=0.092  Sum_probs=51.0

Q ss_pred             EEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCcc--chHHHHHHHHhccCcC
Q 029764           47 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVG  124 (188)
Q Consensus        47 ~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~--~~~~~~~~~~~~L~~g  124 (188)
                      +|..||-++......+..++..|+.  +. ...+..+.+..+.     ...||+|++|...+  +..++++.+.+ .+.-
T Consensus         2 rILiVdDd~~~~~~l~~~L~~~g~~--v~-~a~~~~eal~~~~-----~~~~dlillD~~mp~~~G~~~~~~i~~-~~~~   72 (117)
T d2a9pa1           2 KILIVDDEKPISDIIKFNMTKEGYE--VV-TAFNGREALEQFE-----AEQPDIIILDLMLPEIDGLEVAKTIRK-TSSV   72 (117)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTCE--EE-EESSHHHHHHHHH-----HHCCSEEEECSSCSSSCHHHHHHHHHT-TCCC
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHHH-----hcCCCEEEeccccCCCCccHHHHHHHh-CCCC
Confidence            6889999999999999999988852  33 4566666665553     25899999996433  34556666644 2333


Q ss_pred             eEEEEe
Q 029764          125 GIAVYD  130 (188)
Q Consensus       125 G~lv~~  130 (188)
                      -++++.
T Consensus        73 pvI~lt   78 (117)
T d2a9pa1          73 PILMLS   78 (117)
T ss_dssp             CEEEEE
T ss_pred             CEEEEe
Confidence            355554

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=80.17  E-value=2.2  Score=30.79  Aligned_cols=79  Identities=15%  Similarity=0.091  Sum_probs=49.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhC-CCCCEEEEEeCCchhHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCC
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENE   95 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~   95 (188)
                      .++++||-.|. +|+.+..+++.+ ..+.+|++++.++.......   ......++++++.+|..+  .+.....    .
T Consensus         6 ~~~KkILVTG~-tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~---~~~~~~~~i~~~~~Dl~d~~~l~~~~~----~   77 (356)
T d1rkxa_           6 WQGKRVFVTGH-TGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLF---ETARVADGMQSEIGDIRDQNKLLESIR----E   77 (356)
T ss_dssp             HTTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHH---HHTTTTTTSEEEECCTTCHHHHHHHHH----H
T ss_pred             hCCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEECCCCccHHHH---hhhhcccCCeEEEeeccChHhhhhhhh----h
Confidence            46789999885 688777776655 23678999998665433222   222334679999998754  2333322    2


Q ss_pred             CceeEEEEeC
Q 029764           96 GSFDYAFVDA  105 (188)
Q Consensus        96 ~~~D~i~id~  105 (188)
                      ..+|.|+..+
T Consensus        78 ~~~~~v~~~a   87 (356)
T d1rkxa_          78 FQPEIVFHMA   87 (356)
T ss_dssp             HCCSEEEECC
T ss_pred             chhhhhhhhh
Confidence            4567776554

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.08  E-value=4.5  Score=24.60  Aligned_cols=50  Identities=20%  Similarity=0.202  Sum_probs=35.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHhhCC-CCCEEEEEeCC--------chhHHHHHHHHHhcCC
Q 029764           19 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVN--------RETYEIGLPIIKKAGV   70 (188)
Q Consensus        19 ~~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~--------~~~~~~a~~~~~~~~~   70 (188)
                      ..|++++=||.  |+.++.+|..+. .+.+|+.++..        +++.+.+++.+++.|.
T Consensus        21 ~~p~~~vIiG~--G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV   79 (122)
T d1v59a2          21 EIPKRLTIIGG--GIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGL   79 (122)
T ss_dssp             SCCSEEEEECC--SHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTC
T ss_pred             cCCCeEEEECC--CchHHHHHHHHHhhCcceeEEEeccccchhhhhhhHHHHHHHHHhccc
Confidence            35689999888  555555554332 26899999864        4777888888888774