Citrus Sinensis ID: 029789

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MQAMEKSKNRIELLVELCTKLNGAISVKETQLIGNVALDLEVDLEDPSGLVRIVSPKKRVQEEKDEDKDFDPNAPKPGDNGSQVLQFSDNSQASPLVGEEMDCQGSVGLYIDTEDNKTNSWREISSFSGFLENLDQQLNDIESELVTILNVSSLILDNKEKPKNVKVQQAMELLESVRGIRGRIADFM
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccccEEEEcccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEcccccccccccccccccccccccccccEEEEEcccccccccccHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MQAMEKSKNRIELLVELCTKLNGAISVKETQLIGNVALdlevdledpsglvrivspkkrvqeekdedkdfdpnapkpgdngsqvlqfsdnsqasplvgeemdcqgsvglyidtednktnswrEISSFSGFLENLDQQLNDIESELVTILNVSSLildnkekpknVKVQQAMELLESVRGIRGRIADFM
Flexible Loop (DISEMBL)
MQAMEKSKNRIELLVELCTKLNGAISVKETQLIGNVALdlevdledpsglvrivspkkrvqeekdedkdfdpnapkpgdngsqvLQFSDNSQASPLVGEEMDCQGSVGLYIDTEDNKTNSWREISSFSGFLENLDQQLNDIESELVTILNVSslildnkekpknvKVQQAMellesvrgiRGRIADFM
Low Complexity Region (SEG)
MQAMEKSKNRIELLVELCTKLNGAISVKETQLIGNVALDLEVDLEDPSGLVRIVSPKKRVQEEKDEDKDFDPNAPKPGDNGSQVLQFSDNSQASPLVGEEMDCQGSVGLYIDTEDNKTNSWREISSFSGFLENLDQQLNDIESELVTILNVSSLILDNKEKPKNVKVQQAMELLESVRGIRGRIADFM
Disordered region (IsUnstruct)
**********IELLVELCTKLNGAISVKETQLIGNVALDLEVDLEDPSGLVRI*************************************************CQGSVGLYIDTEDNKTNSWREISSFSGFLENLDQQLNDIESELVTILNVSSLILD*******************************
Disordered Region (DISOPRED)
************LLVELCTKLNGAISVKETQLIGNV**********************************************************************************NSWREISSFSGFLENLDQQLNDIESELVTILNVSSL**************QAMELLESVRGIRGRIADF*
Disordered Region (DISEMBL)
********NRIELLVELCTKLNGAISVKETQLIGNVALDLEVDLEDPSGLVRIVSPK*************DPNAPKPGDNGSQVLQFSDNSQASPLVGEEMDCQGSVGLYIDTEDNKTNSWREISSFSGFLENLDQQLNDIESELVTILNVSSLILDNKEKPKNVKVQQAMELLESVRGIRGRIADFM
Disordered Region (DISPRO)
MQAMEKSKNRIELLVELCTKLNGAISVKETQLIGNVALDLEV****PSGLVRIV*PKK***********FDPNAPKPGDNGSQVLQFSDNSQASPLVGEEMDCQGSVGLYIDTEDNKTNSWREISSFSGFLENLDQQLNDIESELVTILNVSSLILDNKEKPKNVKVQQAMELLESVRGIRGRIADFM
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQAMEKSKNRIELLVELCTKLNGAISVKETQLIGNVALDLEVDLEDPSGLVRIVSPKKRVQEEKDEDKDFDPNAPKPGDNGSQVLQFSDNSQASPLVGEEMDCQGSVGLYIDTEDNKTNSWREISSFSGFxxxxxxxxxxxxxxxxxxxxxSSLILDNKEKPKNVKVQQAMELLESVRGIRGRIADFM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
302143549	259	unnamed protein product [Vitis vinifera]	0.984	0.714	0.544	5e-41
225446839	287	PREDICTED: uncharacterized protein LOC10	0.989	0.648	0.537	1e-40
255586932	283	conserved hypothetical protein [Ricinus	0.968	0.643	0.521	2e-40
255645516	293	unknown [Glycine max]	0.962	0.617	0.491	5e-37
356501463	293	PREDICTED: uncharacterized protein LOC10	0.962	0.617	0.491	8e-37
357494295	301	hypothetical protein MTR_5g091560 [Medic	0.957	0.598	0.5	5e-35
224085354	268	predicted protein [Populus trichocarpa]	0.914	0.641	0.510	8e-35
356553691	296	PREDICTED: uncharacterized protein LOC10	0.968	0.614	0.464	2e-32
30679709	277	uncharacterized protein [Arabidopsis tha	0.914	0.620	0.463	3e-31
297843454	271	hypothetical protein ARALYDRAFT_887855 [	0.914	0.634	0.471	1e-30

>gi|302143549|emb|CBI22110.3| unnamed protein product [Vitis vinifera]

 Score =  172 bits (436), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 103/189 (54%), Positives = 133/189 (70%), Gaps = 4/189 (2%)

Query: 1   MQAMEKSKNRIELLVELCTKLNGAISVKETQLIGNVALDLEVDLEDPSGLVRIVSPKKRV 60
           MQA+EKSK+RIELL EL  KLN AISVKE+QLI NV+LDLEV  ED    VRIVSPK+  
Sbjct: 68  MQALEKSKSRIELLDELSAKLNEAISVKESQLINNVSLDLEVGGEDALSPVRIVSPKEET 127

Query: 61  QEEKDEDKDFDPNAPKPGDNG-SQVLQFSDNSQASPLVGEEMDCQGSVGLYIDTEDNKTN 119
            E  +E++ FD    +P + G  Q  QF  ++QAS L+  E   QG+V + I  +D+   
Sbjct: 128 TENSNENEYFDF---RPSEVGKGQEEQFLTDNQASVLLNSEDIQQGNVNVGIWDKDDMIG 184

Query: 120 SWREISSFSGFLENLDQQLNDIESELVTILNVSSLILDNKEKPKNVKVQQAMELLESVRG 179
           S ++ISS+  FLE+LDQQL+ IE ELV +L +S+LIL+N+ KPKN K+QQ M++LESVRG
Sbjct: 185 SLQQISSYQSFLEHLDQQLSKIEGELVAVLRLSTLILENEGKPKNSKLQQTMDILESVRG 244

Query: 180 IRGRIADFM 188
           IR RI   M
Sbjct: 245 IRLRITSIM 253

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446839|ref|XP_002283630.1| PREDICTED: uncharacterized protein LOC100245557 [Vitis vinifera]

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 101/188 (53%), Positives = 131/188 (69%), Gaps = 2/188 (1%)

Query: 1   MQAMEKSKNRIELLVELCTKLNGAISVKETQLIGNVALDLEVDLEDPSGLVRIVSPKKRV 60
           MQA+EKSK+RIELL EL  KLN AISVKE+QLI NV+LDLEV  ED    VRIVSPK+  
Sbjct: 96  MQALEKSKSRIELLDELSAKLNEAISVKESQLINNVSLDLEVGGEDALSPVRIVSPKEET 155

Query: 61  QEEKDEDKDFDPNAPKPGDNGSQVLQFSDNSQASPLVGEEMDCQGSVGLYIDTEDNKTNS 120
            E  +E++ FD    + G    +  QF  ++QAS L+  E   QG+V + I  +D+   S
Sbjct: 156 TENSNENEYFDFRPSEVGKGQEE--QFLTDNQASVLLNSEDIQQGNVNVGIWDKDDMIGS 213

Query: 121 WREISSFSGFLENLDQQLNDIESELVTILNVSSLILDNKEKPKNVKVQQAMELLESVRGI 180
            ++ISS+  FLE+LDQQL+ IE ELV +L +S+LIL+N+ KPKN K+QQ M++LESVRGI
Sbjct: 214 LQQISSYQSFLEHLDQQLSKIEGELVAVLRLSTLILENEGKPKNSKLQQTMDILESVRGI 273

Query: 181 RGRIADFM 188
           R RI   M
Sbjct: 274 RLRITSIM 281

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586932|ref|XP_002534066.1| conserved hypothetical protein [Ricinus communis] gi|223525893|gb|EEF28310.1| conserved hypothetical protein [Ricinus communis]

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 98/188 (52%), Positives = 133/188 (70%), Gaps = 6/188 (3%)

Query: 1   MQAMEKSKNRIELLVELCTKLNGAISVKETQLIGNVALDLEVDLEDPSGLVRIVSPKKRV 60
           MQAME+SK+RIELL +L  KLN AIS+KE+ LIGN+ALDLE D +D SG VRI+SPK+ +
Sbjct: 95  MQAMERSKSRIELLDQLSAKLNEAISIKESLLIGNIALDLENDSKDASGPVRIISPKEGI 154

Query: 61  QEEKDEDKDFDPNAPKPGDNGSQVLQFSDNSQASPLVGEEMDCQGSVGLYIDTEDNKTNS 120
            ++KDEDK F   +  P  + +Q LQ   + +AS    +E+   GS+   +  ED+    
Sbjct: 155 VDDKDEDKYF---SSVPNGSSNQDLQLYSDDEASRQADKEL---GSLSNDVGIEDSMVTG 208

Query: 121 WREISSFSGFLENLDQQLNDIESELVTILNVSSLILDNKEKPKNVKVQQAMELLESVRGI 180
              ISS+  FLE+LD QLN IE+ELVTILNVS+L++++++KPKN KVQQ +ELL+SVR I
Sbjct: 209 LVGISSYEDFLEHLDLQLNRIEAELVTILNVSALVINDEDKPKNSKVQQTIELLDSVRSI 268

Query: 181 RGRIADFM 188
           R RI   +
Sbjct: 269 RNRIGRII 276

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645516|gb|ACU23253.1| unknown [Glycine max]

 Score =  159 bits (402), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 91/185 (49%), Positives = 132/185 (71%), Gaps = 4/185 (2%)

Query: 1   MQAMEKSKNRIELLVELCTKLNGAISVKETQLIGNVALDLEVDLEDPSGLVRIVSPKKRV 60
           +QA++KSK RIELL EL TKL+ AIS+KE+QLIGNV +++E   ED S  VRI+SPK+ V
Sbjct: 102 LQALDKSKRRIELLDELSTKLSEAISLKESQLIGNVTVNIEDSTEDASSPVRIISPKEEV 161

Query: 61  QEEKDEDKDFDPNAPKPGDNGSQVLQFSDNSQASPLVGEEM-DCQGSVGLYIDTEDNKTN 119
           Q +  +D D DP+  +  D   Q +Q S  S+ SPL  +E  +   S+ +    E+    
Sbjct: 162 QNDVTKD-DSDPDTMEFSD--IQDVQLSIESEGSPLDDKETQNLLESLSISTSNEEYIAR 218

Query: 120 SWREISSFSGFLENLDQQLNDIESELVTILNVSSLILDNKEKPKNVKVQQAMELLESVRG 179
           +  EISS+  F+E++D++L++IE+ELVT+LNVS+L+LDN+E+PKN ++QQ +ELLES+ G
Sbjct: 219 NLSEISSYEDFMEHIDKKLSEIEAELVTVLNVSTLVLDNEERPKNFRLQQTIELLESIHG 278

Query: 180 IRGRI 184
           IR RI
Sbjct: 279 IRQRI 283

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501463|ref|XP_003519544.1| PREDICTED: uncharacterized protein LOC100777386 [Glycine max]

 Score =  158 bits (400), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 91/185 (49%), Positives = 132/185 (71%), Gaps = 4/185 (2%)

Query: 1   MQAMEKSKNRIELLVELCTKLNGAISVKETQLIGNVALDLEVDLEDPSGLVRIVSPKKRV 60
           +QA++KSK RIELL EL TKL+ AIS+KE+QLIGNV +++E   ED S  VRI+SPK+ V
Sbjct: 102 LQALDKSKRRIELLDELSTKLSEAISLKESQLIGNVTVNIEDSTEDASSPVRIISPKEEV 161

Query: 61  QEEKDEDKDFDPNAPKPGDNGSQVLQFSDNSQASPLVGEEM-DCQGSVGLYIDTEDNKTN 119
           Q +  +D D DP+  +  D   Q +Q S  S+ SPL  +E  +   S+ +    E+    
Sbjct: 162 QNDVTKD-DSDPDTMEFSD--IQDVQLSIESEGSPLDDKETQNLLESLSISTSNEEYIAR 218

Query: 120 SWREISSFSGFLENLDQQLNDIESELVTILNVSSLILDNKEKPKNVKVQQAMELLESVRG 179
           +  EISS+  F+E++D++L++IE+ELVT+LNVS+L+LDN+E+PKN ++QQ +ELLES+ G
Sbjct: 219 NLSEISSYEDFMEHIDKKLSEIEAELVTVLNVSTLVLDNEERPKNSRLQQTIELLESIHG 278

Query: 180 IRGRI 184
           IR RI
Sbjct: 279 IRQRI 283

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357494295|ref|XP_003617436.1| hypothetical protein MTR_5g091560 [Medicago truncatula] gi|355518771|gb|AET00395.1| hypothetical protein MTR_5g091560 [Medicago truncatula]

 Score =  152 bits (385), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 92/184 (50%), Positives = 125/184 (67%), Gaps = 4/184 (2%)

Query: 1   MQAMEKSKNRIELLVELCTKLNGAISVKETQLIGNVALDLEVDLEDPSGLVRIVSPKKRV 60
           +QA+EKSKNRIELL EL TKL+  IS+KE+QL+GNV +++E   ED S  VRIV+PK+ V
Sbjct: 106 LQALEKSKNRIELLDELSTKLSEVISLKESQLVGNVTMNMEDTTEDASSPVRIVAPKEEV 165

Query: 61  QEEKDEDKDFDPNAPKPGDNGSQVLQFSDNSQASPLVGEEMD-CQGSVGLYIDTEDNKTN 119
            ++  +D D D N  K GD   Q +Q S  SQ +P    E +    S+      E+N  N
Sbjct: 166 LKDSPKD-DSDLNMMKFGD--IQDMQISSESQENPPDDTETENLLRSLKTATGNENNIPN 222

Query: 120 SWREISSFSGFLENLDQQLNDIESELVTILNVSSLILDNKEKPKNVKVQQAMELLESVRG 179
           S  EISS+  F+E++DQ+L++IE+ELV  LN S L+LD++E+PKN + QQ MELLES+ G
Sbjct: 223 SLSEISSYKDFMEHIDQKLHEIETELVAFLNFSVLVLDSEERPKNSRWQQTMELLESIHG 282

Query: 180 IRGR 183
           IR R
Sbjct: 283 IRQR 286

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085354|ref|XP_002307551.1| predicted protein [Populus trichocarpa] gi|222857000|gb|EEE94547.1| predicted protein [Populus trichocarpa]

 Score =  152 bits (383), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 93/182 (51%), Positives = 120/182 (65%), Gaps = 10/182 (5%)

Query: 1   MQAMEKSKNRIELLVELCTKLNGAISVKETQLIGNVALDLEVDLEDPSGLVRIVSPKKRV 60
           M A+ +SKNRIELL +L +KLN  ISVKE QLIGNVA D+EV+ +D S  VRIVSPK  V
Sbjct: 94  MHAIGRSKNRIELLDQLSSKLNQVISVKENQLIGNVAFDVEVETKDDSSPVRIVSPKLGV 153

Query: 61  QE-EKDEDKDFDPNAPKPGDNGSQVLQFSDNSQASPLVGEEMDCQGSVGLYIDTEDNKTN 119
            +   D+D +F         +  Q LQ   N + +P V EE+   G        E++ T 
Sbjct: 154 TDFSSDDDLEF---------SDGQDLQLCANGETNPPVDEEVGFLGRDICNDSNEESITR 204

Query: 120 SWREISSFSGFLENLDQQLNDIESELVTILNVSSLILDNKEKPKNVKVQQAMELLESVRG 179
             +++SS+  FLE+LD +LN IESELVTILNVS+L+L++ EKP N KVQQ +ELLESVR 
Sbjct: 205 GLKDVSSYEDFLEHLDVKLNKIESELVTILNVSALVLNDNEKPNNFKVQQTIELLESVRA 264

Query: 180 IR 181
           IR
Sbjct: 265 IR 266

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553691|ref|XP_003545186.1| PREDICTED: uncharacterized protein LOC100790457 [Glycine max]

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/185 (46%), Positives = 126/185 (68%), Gaps = 3/185 (1%)

Query: 1   MQAMEKSKNRIELLVELCTKLNGAISVKETQLIGNVALDLEVDLEDPSGLVRIVSPKKRV 60
           +QA++KSK RIE+L EL +KL+ AIS+KE+QLIGNV + +E   ED S  VRI++PK+ V
Sbjct: 104 LQALDKSKRRIEVLDELSSKLSEAISLKESQLIGNVTVKIEDTTEDASSPVRIIAPKEEV 163

Query: 61  QEEKDEDKDFDPNAPKPGDNGSQVLQFSDNSQASPLVGEEM-DCQGSVGLYIDTEDNKTN 119
           Q    +D+  DP+  + G +   V Q S  S+ S L  +E      S+ +    EDN   
Sbjct: 164 QNNVTKDES-DPDTAEFGGDIQDV-QLSIESEGSSLDDKETQHLLESLSISTPNEDNIAR 221

Query: 120 SWREISSFSGFLENLDQQLNDIESELVTILNVSSLILDNKEKPKNVKVQQAMELLESVRG 179
           +  EISS+  F+E +D +L++IE+ELVT+LNVS+L+LDN+E+ KN ++QQ +ELL+S+ G
Sbjct: 222 NSSEISSYEDFMEYIDLKLSEIEAELVTVLNVSTLVLDNEERAKNSRLQQTIELLDSIHG 281

Query: 180 IRGRI 184
           IR RI
Sbjct: 282 IRQRI 286

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30679709|ref|NP_172138.2| uncharacterized protein [Arabidopsis thaliana] gi|27754366|gb|AAO22632.1| unknown protein [Arabidopsis thaliana] gi|28393897|gb|AAO42356.1| unknown protein [Arabidopsis thaliana] gi|332189879|gb|AEE28000.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 88/190 (46%), Positives = 128/190 (67%), Gaps = 18/190 (9%)

Query: 1   MQAMEKSKNRIELLVELCTKLNGAISVKETQLIGNVALDLEVDLEDPSGLVRIVSPKKRV 60
           MQA++K+K RIELL  L +KLN AISVKETQLIGN++LDLE D E+ SG + IVSPK   
Sbjct: 97  MQALDKAKARIELLDTLSSKLNEAISVKETQLIGNISLDLEEDGENTSGGIHIVSPKPES 156

Query: 61  QEEKDEDKDFDPNAPKPGDNGSQVLQFS-DNSQASPLVGEEMDCQGSVGLYIDTEDNKTN 119
            E+  E+     ++      G Q+++ + ++ Q      E +D   +V      ED    
Sbjct: 157 TEDGVENDHTHLDSE-----GIQLIERNVEDYQ------ELLDTNNNV-----LEDVSIG 200

Query: 120 S-WREISSFSGFLENLDQQLNDIESELVTILNVSSLILDNKEKPKNVKVQQAMELLESVR 178
           S  +E+SS+  FLENLDQ+L+ IE+ELVT++NV+SL+L++++KPKN+KVQQ  E+LE +R
Sbjct: 201 SILKEVSSYESFLENLDQKLSRIEAELVTVVNVASLVLNHEDKPKNLKVQQTAEILEEIR 260

Query: 179 GIRGRIADFM 188
            +R RIA+ +
Sbjct: 261 RVRERIANII 270

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843454|ref|XP_002889608.1| hypothetical protein ARALYDRAFT_887855 [Arabidopsis lyrata subsp. lyrata] gi|297335450|gb|EFH65867.1| hypothetical protein ARALYDRAFT_887855 [Arabidopsis lyrata subsp. lyrata]

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/191 (47%), Positives = 126/191 (65%), Gaps = 19/191 (9%)

Query: 1   MQAMEKSKNRIELLVELCTKLNGAISVKETQLIGNVALDLEVDLED-PSGLVRIVSPKKR 59
           MQA++K+K RIELL  L +KLN AISVKETQLIGN++LDLE D E+  SG + IVSPK +
Sbjct: 90  MQALDKAKARIELLDTLSSKLNEAISVKETQLIGNISLDLEEDGENSTSGGIHIVSPKPK 149

Query: 60  VQEEKDEDKDFDPNAPKPGDN-GSQVLQFSDNSQASPLVGEEMDCQGSVGLYIDTEDNKT 118
             E      D   N     D+ GSQ+++     + S    E ++    V      ED  T
Sbjct: 150 STE------DGHANDYTHLDSEGSQLIE-----RNSEDYQELLNTDNHV-----LEDVST 193

Query: 119 NS-WREISSFSGFLENLDQQLNDIESELVTILNVSSLILDNKEKPKNVKVQQAMELLESV 177
            S  +E+SS+  FLE+LDQ+L+ IE+ELVT++NV+ L+L++++KPKN+KVQQ  E+LE +
Sbjct: 194 GSILKEVSSYESFLESLDQKLSRIEAELVTVVNVAFLVLNHEDKPKNLKVQQTAEILEEI 253

Query: 178 RGIRGRIADFM 188
           R +R RIAD +
Sbjct: 254 RRVRERIADII 264

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
TAIR|locus:2009135	277	AT1G06510 "AT1G06510" [Arabido	0.920	0.624	0.460	1.8e-32

TAIR|locus:2009135 AT1G06510 "AT1G06510" [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 87/189 (46%), Positives = 125/189 (66%)

Query:     1 MQAMEKSKNRIELLVELCTKLNGAISVKETQLIGNVALDLEVDLEDPSGLVRIVSPKKRV 60
             MQA++K+K RIELL  L +KLN AISVKETQLIGN++LDLE D E+ SG + IVSPK   
Sbjct:    97 MQALDKAKARIELLDTLSSKLNEAISVKETQLIGNISLDLEEDGENTSGGIHIVSPKPES 156

Query:    61 QEEKDEDKDFDPNAPKPGDNGSQVLQFSDNSQASPLVGEEMDCQGSVGLYIDTEDNKTNS 120
              E+  E+     ++      G Q+++ +          E +D   +V      ED    S
Sbjct:   157 TEDGVENDHTHLDS-----EGIQLIERNVEDYQ-----ELLDTNNNV-----LEDVSIGS 201

Query:   121 -WREISSFSGFLENLDQQLNDIESELVTILNVSSLILDNKEKPKNVKVQQAMELLESVRG 179
               +E+SS+  FLENLDQ+L+ IE+ELVT++NV+SL+L++++KPKN+KVQQ  E+LE +R 
Sbjct:   202 ILKEVSSYESFLENLDQKLSRIEAELVTVVNVASLVLNHEDKPKNLKVQQTAEILEEIRR 261

Query:   180 IRGRIADFM 188
             +R RIA+ +
Sbjct:   262 VRERIANII 270


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.310   0.131   0.354    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      188       188   0.00087  110 3  11 23  0.40    33
                                                     31  0.42    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  566 (60 KB)
  Total size of DFA:  142 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.15u 0.15s 22.30t   Elapsed:  00:00:01
  Total cpu time:  22.15u 0.15s 22.30t   Elapsed:  00:00:01
  Start:  Thu May  9 18:08:18 2013   End:  Thu May  9 18:08:19 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00018898001 SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (265 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00