Citrus Sinensis ID: 029797

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------
MEMEGKIQKNSRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLRSTCLCMME
ccccccccccccccEEEEEccccccccHHHHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHcccEEEEEcccccccccccccccccEEEcccHHHHHHHHHHHccEEEEcccccccHHHHHHHHHHHHHHcccccEEEEccccHHHHHHHHHHHHcccccccccccEEEcccHHHHHHHHc
cccccHHHccccccEEEEEEcccccccHHHHHHHHHHHHHHHHccccEEEcccHHHHHHHHHHHHHHcccEEEEEEcHHHcHHHHccccccEEEEEccHHHHHHHHHHHcccEEEccccccHHHHHHHHHHHHHHccccccEEEEcccHHHHHHHHHHHHHcccccHccccEEEEcccHHHHHHHcc
memegkiqknsrfKRVCVfcgsstgkrncysdAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVhhgggnvigiiprtlmnkeitgetvgevrpvadMHQRKAEMARHSDcfialpggygtLEELLEVITWAQlgihdkpvcvankpksPLMMALSSLLSATSLSQHQTLKNLFKNLRSTCLCMME
memegkiqknsrfkrVCVFCGsstgkrncySDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLRSTCLCMME
MEMEGKIQKNSRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAvhhgggnvigiiPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKsplmmalssllsatslsqhqtlKNLFKNLRSTCLCMME
************FKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRPVAD*******MARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANK****LMMAL**LL********QTLKNLFKNLRSTCLC***
***************VCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLRSTCLCMME
*********NSRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLRSTCLCMME
**********SRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLRSTCLCMME
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEMEGKIQKNSRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKSPLMMALSSLLSATSLSQHQTLKNLFKNLRSTCLCMME
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query187 2.2.26 [Sep-21-2011]
Q8LBB7228 Cytokinin riboside 5'-mon yes no 0.732 0.600 0.846 1e-64
Q8L8B8215 Cytokinin riboside 5'-mon no no 0.780 0.679 0.760 5e-63
Q9LFH3215 Cytokinin riboside 5'-mon no no 0.780 0.679 0.753 9e-62
Q8GW29217 Cytokinin riboside 5'-mon no no 0.743 0.640 0.755 5e-60
Q7XDB8204 Probable cytokinin ribosi yes no 0.737 0.676 0.789 5e-60
B9F166244 Probable cytokinin ribosi no no 0.732 0.561 0.773 1e-59
Q0JBP5250 Probable cytokinin ribosi no no 0.732 0.548 0.766 1e-59
Q8H7U8211 Probable cytokinin ribosi no no 0.732 0.649 0.788 3e-59
Q8RUN2213 Cytokinin riboside 5'-mon no no 0.732 0.643 0.766 8e-59
Q9LYV8201 Probable cytokinin ribosi no no 0.743 0.691 0.755 1e-58
>sp|Q8LBB7|LOG5_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG5 OS=Arabidopsis thaliana GN=LOG5 PE=1 SV=1 Back     alignment and function desciption
 Score =  245 bits (626), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 116/137 (84%), Positives = 124/137 (90%)

Query: 10  NSRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGG 69
            SRFKRVCVFCGSS+GKR CYSDAA DLA ELV RRL+LVYGGGSIGLMGLVS+AVH  G
Sbjct: 5   KSRFKRVCVFCGSSSGKRECYSDAATDLAQELVTRRLNLVYGGGSIGLMGLVSQAVHEAG 64

Query: 70  GNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEV 129
           G+V+GIIPRTLM+KEITGET GEV  VADMH+RKAEMARHSDCFIALPGGYGTLEELLEV
Sbjct: 65  GHVLGIIPRTLMDKEITGETYGEVIAVADMHERKAEMARHSDCFIALPGGYGTLEELLEV 124

Query: 130 ITWAQLGIHDKPVCVAN 146
           I WAQLGIHDKPV + N
Sbjct: 125 IAWAQLGIHDKPVGLLN 141
Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 2EC: .EC: nEC: 1
>sp|Q8L8B8|LOG3_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 OS=Arabidopsis thaliana GN=LOG3 PE=1 SV=1 Back     alignment and function description
>sp|Q9LFH3|LOG4_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG4 OS=Arabidopsis thaliana GN=LOG4 PE=1 SV=1 Back     alignment and function description
>sp|Q8GW29|LOG7_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 OS=Arabidopsis thaliana GN=LOG7 PE=1 SV=2 Back     alignment and function description
>sp|Q7XDB8|LOGLA_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL10 OS=Oryza sativa subsp. japonica GN=LOGL10 PE=2 SV=1 Back     alignment and function description
>sp|B9F166|LOGL2_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL2 OS=Oryza sativa subsp. japonica GN=LOGL2 PE=3 SV=1 Back     alignment and function description
>sp|Q0JBP5|LOGL6_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL6 OS=Oryza sativa subsp. japonica GN=LOGL6 PE=2 SV=1 Back     alignment and function description
>sp|Q8H7U8|LOGL3_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL3 OS=Oryza sativa subsp. japonica GN=LOGL3 PE=2 SV=1 Back     alignment and function description
>sp|Q8RUN2|LOG1_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1 OS=Arabidopsis thaliana GN=LOG1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LYV8|LOG6_ARATH Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG6 OS=Arabidopsis thaliana GN=LOG6 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query187
224078472206 predicted protein [Populus trichocarpa] 0.770 0.699 0.881 3e-69
449444374252 PREDICTED: cytokinin riboside 5'-monopho 0.770 0.571 0.868 2e-68
224105085206 predicted protein [Populus trichocarpa] 0.770 0.699 0.861 4e-68
255569542235 carboxy-lyase, putative [Ricinus communi 0.775 0.617 0.863 4e-68
449444376228 PREDICTED: cytokinin riboside 5'-monopho 0.764 0.627 0.868 1e-67
449475938199 PREDICTED: cytokinin riboside 5'-monopho 0.764 0.718 0.861 4e-67
359492329268 PREDICTED: cytokinin riboside 5'-monopho 0.764 0.533 0.843 4e-67
449453077226 PREDICTED: cytokinin riboside 5'-monopho 0.732 0.606 0.883 7e-67
224065703241 predicted protein [Populus trichocarpa] 0.791 0.614 0.798 1e-66
225428197229 PREDICTED: cytokinin riboside 5'-monopho 0.764 0.624 0.868 3e-66
>gi|224078472|ref|XP_002305546.1| predicted protein [Populus trichocarpa] gi|222848510|gb|EEE86057.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  266 bits (680), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 127/144 (88%), Positives = 135/144 (93%)

Query: 3   MEGKIQKNSRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVS 62
           MEGK  K SRFK VCVFCGSSTGKRNCY DAAI+LA ELVA+RLDLVYGGGSIGLMGLVS
Sbjct: 1   MEGKAVKPSRFKSVCVFCGSSTGKRNCYRDAAIELAQELVAKRLDLVYGGGSIGLMGLVS 60

Query: 63  KAVHHGGGNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGYGT 122
           +AVH GGGNV+GIIPRTLM+KEITGETVGEV+PVADMHQRKAEMAR+SDCFIALPGGYGT
Sbjct: 61  QAVHRGGGNVLGIIPRTLMSKEITGETVGEVKPVADMHQRKAEMARNSDCFIALPGGYGT 120

Query: 123 LEELLEVITWAQLGIHDKPVCVAN 146
           LEELLEVITWAQLGIHDKPV + N
Sbjct: 121 LEELLEVITWAQLGIHDKPVGLLN 144

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449444374|ref|XP_004139950.1| PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG5-like isoform 1 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224105085|ref|XP_002313681.1| predicted protein [Populus trichocarpa] gi|222850089|gb|EEE87636.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255569542|ref|XP_002525737.1| carboxy-lyase, putative [Ricinus communis] gi|223534951|gb|EEF36636.1| carboxy-lyase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449444376|ref|XP_004139951.1| PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG5-like isoform 2 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449475938|ref|XP_004154594.1| PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG5-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|359492329|ref|XP_002285924.2| PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG5-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449453077|ref|XP_004144285.1| PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224065703|ref|XP_002301929.1| predicted protein [Populus trichocarpa] gi|222843655|gb|EEE81202.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225428197|ref|XP_002281839.1| PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG5 [Vitis vinifera] gi|297744519|emb|CBI37781.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query187
TAIR|locus:2132821228 LOG5 "AT4G35190" [Arabidopsis 0.727 0.596 0.794 4.9e-53
TAIR|locus:2084051215 LOG4 "AT3G53450" [Arabidopsis 0.780 0.679 0.698 5.1e-51
TAIR|locus:2828223213 LOG1 "AT2G28305" [Arabidopsis 0.727 0.638 0.720 1.1e-48
TAIR|locus:2164280217 LOG7 "AT5G06300" [Arabidopsis 0.743 0.640 0.697 4.7e-48
TAIR|locus:2143473201 LOG6 "AT5G03270" [Arabidopsis 0.743 0.691 0.697 1.2e-47
UNIPROTKB|Q5ZC82242 LOG "Cytokinin riboside 5'-mon 0.759 0.586 0.633 2.4e-44
TAIR|locus:2039175213 LOG2 "AT2G35990" [Arabidopsis 0.743 0.652 0.618 1.3e-43
TAIR|locus:2143029216 LOG8 "LONELY GUY 8" [Arabidops 0.737 0.638 0.601 1.1e-41
TIGR_CMR|GSU_2766196 GSU_2766 "decarboxylase family 0.711 0.678 0.511 1.8e-30
UNIPROTKB|Q4KJ50195 PFL_0591 "Uncharacterized prot 0.679 0.651 0.519 9.1e-29
TAIR|locus:2132821 LOG5 "AT4G35190" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 108/136 (79%), Positives = 114/136 (83%)

Query:    11 SRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAXXXXXX 70
             SRFKRVCVFCGSS+GKR CYSDAA DLA ELV RRL+LVYGGGSIGLMGLVS+A      
Sbjct:     6 SRFKRVCVFCGSSSGKRECYSDAATDLAQELVTRRLNLVYGGGSIGLMGLVSQAVHEAGG 65

Query:    71 XXXXXXPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEVI 130
                   PRTLM+KEITGET GEV  VADMH+RKAEMARHSDCFIALPGGYGTLEELLEVI
Sbjct:    66 HVLGIIPRTLMDKEITGETYGEVIAVADMHERKAEMARHSDCFIALPGGYGTLEELLEVI 125

Query:   131 TWAQLGIHDKPVCVAN 146
              WAQLGIHDKPV + N
Sbjct:   126 AWAQLGIHDKPVGLLN 141
GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0005634 "nucleus" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2084051 LOG4 "AT3G53450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2828223 LOG1 "AT2G28305" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164280 LOG7 "AT5G06300" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143473 LOG6 "AT5G03270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZC82 LOG "Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2039175 LOG2 "AT2G35990" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143029 LOG8 "LONELY GUY 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2766 GSU_2766 "decarboxylase family protein" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|Q4KJ50 PFL_0591 "Uncharacterized protein" [Pseudomonas protegens Pf-5 (taxid:220664)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7XDB8LOGLA_ORYSJ3, ., 2, ., 2, ., n, 10.78980.73790.6764yesno
Q8LBB7LOG5_ARATH3, ., 2, ., 2, ., n, 10.84670.73260.6008yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.2.n10.946
3rd Layer3.2.20.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_IV1427
hypothetical protein (206 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query187
pfam03641130 pfam03641, Lysine_decarbox, Possible lysine decarb 8e-46
TIGR00730178 TIGR00730, TIGR00730, TIGR00730 family protein 1e-43
COG1611205 COG1611, COG1611, Predicted Rossmann fold nucleoti 6e-42
TIGR00725159 TIGR00725, TIGR00725, TIGR00725 family protein 3e-09
>gnl|CDD|217655 pfam03641, Lysine_decarbox, Possible lysine decarboxylase Back     alignment and domain information 
 Score =  146 bits (372), Expect = 8e-46
 Identities = 50/89 (56%), Positives = 61/89 (68%)

Query: 58  MGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDCFIALP 117
           MG V+      GG VIGIIP  L  +EI    V E+  V DMH+RKA MAR +D F+ALP
Sbjct: 1   MGAVADGALEAGGRVIGIIPNILAPEEIPNPIVTELIIVPDMHERKAAMARLADAFVALP 60

Query: 118 GGYGTLEELLEVITWAQLGIHDKPVCVAN 146
           GG+GTLEEL E++TW QLGIH KP+ + N
Sbjct: 61  GGFGTLEELFEILTWIQLGIHQKPIILLN 89

The members of this family share a highly conserved motif PGGXGTXXE that is probably functionally important. This family includes proteins annotated as lysine decarboxylases, although the evidence for this is not clear. Length = 130
>gnl|CDD|129813 TIGR00730, TIGR00730, TIGR00730 family protein Back     alignment and domain information
>gnl|CDD|224527 COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>gnl|CDD|129808 TIGR00725, TIGR00725, TIGR00725 family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 187
TIGR00730178 conserved hypothetical protein, DprA/Smf-related, 100.0
COG1611205 Predicted Rossmann fold nucleotide-binding protein 100.0
TIGR00725159 conserved hypothetical protein, DprA/Smf-related, 100.0
PF03641133 Lysine_decarbox: Possible lysine decarboxylase; In 100.0
TIGR00732220 dprA DNA protecting protein DprA. Disruption of th 99.73
PF02481212 DNA_processg_A: DNA recombination-mediator protein 99.47
PRK10736374 hypothetical protein; Provisional 99.45
COG0758350 Smf Predicted Rossmann fold nucleotide-binding pro 99.3
PF12694145 MoCo_carrier: Putative molybdenum carrier; InterPr 97.52
PF05014113 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransfer 96.35
PF06908177 DUF1273: Protein of unknown function (DUF1273); In 96.27
KOG3614 1381 consensus Ca2+/Mg2+-permeable cation channels (LTR 96.17
PF11071141 DUF2872: Protein of unknown function (DUF2872); In 96.11
PF1068671 DUF2493: Protein of unknown function (DUF2493); In 96.03
COG0707357 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosami 95.86
PRK13609380 diacylglycerol glucosyltransferase; Provisional 95.49
PLN02605382 monogalactosyldiacylglycerol synthase 95.3
TIGR03646144 YtoQ_fam YtoQ family protein. Members of this fami 95.28
PRK13608391 diacylglycerol glucosyltransferase; Provisional 95.25
PRK13660182 hypothetical protein; Provisional 94.91
cd03785350 GT1_MurG MurG is an N-acetylglucosaminyltransferas 94.85
TIGR01133348 murG undecaprenyldiphospho-muramoylpentapeptide be 94.7
PRK00025380 lpxB lipid-A-disaccharide synthase; Reviewed 94.4
PF13528318 Glyco_trans_1_3: Glycosyl transferase family 1 94.02
TIGR01426392 MGT glycosyltransferase, MGT family. This model de 93.5
cd03784401 GT1_Gtf_like This family includes the Gtfs, a grou 92.86
PF04101167 Glyco_tran_28_C: Glycosyltransferase family 28 C-t 92.22
PRK12446352 undecaprenyldiphospho-muramoylpentapeptide beta-N- 91.99
PRK10565 508 putative carbohydrate kinase; Provisional 91.01
PRK05749425 3-deoxy-D-manno-octulosonic-acid transferase; Revi 90.39
TIGR03590279 PseG pseudaminic acid biosynthesis-associated prot 89.52
PRK00696388 sucC succinyl-CoA synthetase subunit beta; Provisi 88.92
PRK00726357 murG undecaprenyldiphospho-muramoylpentapeptide be 85.38
COG1819406 Glycosyl transferases, related to UDP-glucuronosyl 85.32
COG3660329 Predicted nucleoside-diphosphate-sugar epimerase [ 83.95
TIGR00215385 lpxB lipid-A-disaccharide synthase. Lipid-A precur 83.5
PF06258311 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterP 83.17
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2 Back     alignment and domain information 
Probab=100.00  E-value=6.8e-49  Score=317.19  Aligned_cols=167  Identities=41%  Similarity=0.732  Sum_probs=157.7

Q ss_pred             ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHhcCCeEEEEeCcccccccccCCCCceE
Q 029797           14 KRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVGEV   93 (187)
Q Consensus        14 ~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~~~~~~e~~~~~~~~~   93 (187)
                      ++|||||||+.+.+++|++.|++||++||++|+.||||||..|+|++++++|+++||.|+||+|..+..++.+++..++.
T Consensus         1 ~~i~V~~~s~~~~~~~~~~~A~~lG~~la~~g~~lV~GGg~~GlM~a~a~ga~~~gG~viGi~p~~l~~~~~~~~~~~~~   80 (178)
T TIGR00730         1 KTVCVYCGSSPGGNAAYKELAAELGAYLAGQGWGLVYGGGRVGLMGAIADAAMENGGTAVGVNPSGLFSGEVVHQNLTEL   80 (178)
T ss_pred             CEEEEECcCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCChHhHHHHHHHHHHhcCCeEEEecchhhhhhhccCCCCCce
Confidence            48999999999999999999999999999999999999996699999999999999999999999887778888888899


Q ss_pred             eecCCHHHHHHHHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCC--chHHHHHhHHhCCCcCC----
Q 029797           94 RPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKS--PLMMALSSLLSATSLSQ----  167 (187)
Q Consensus        94 ~~~~~m~~R~~~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~--~l~~~~~~~~~~~~i~~----  167 (187)
                      +.+++|++||.+|++.||+||+||||+|||+|++++|+|.|++.|+||++++|.+||  ++.+|++++++.+++..    
T Consensus        81 i~~~~~~~Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~gfi~~~~~~  160 (178)
T TIGR00730        81 IEVNGMHERKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEGFISESHLK  160 (178)
T ss_pred             EEECCHHHHHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCCCCCHHHcC
Confidence            899999999999999999999999999999999999999999999999999999988  58999999999988765    


Q ss_pred             ----CCCHHHHHHHHHh
Q 029797          168 ----HQTLKNLFKNLRS  180 (187)
Q Consensus       168 ----~~t~~e~v~~l~~  180 (187)
                          .+||+|++++|++
T Consensus       161 ~~~~~d~~~e~~~~i~~  177 (178)
T TIGR00730       161 LIHVVSRPDELIEQVQN  177 (178)
T ss_pred             cEEEcCCHHHHHHHHHh
Confidence                4999999999975

This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1 Back     alignment and domain information
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway Back     alignment and domain information
>TIGR00732 dprA DNA protecting protein DprA Back     alignment and domain information
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins Back     alignment and domain information
>PRK10736 hypothetical protein; Provisional Back     alignment and domain information
>COG0758 Smf Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion] Back     alignment and domain information
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices Back     alignment and domain information
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2 Back     alignment and domain information
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain Back     alignment and domain information
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis Back     alignment and domain information
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61 Back     alignment and domain information
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK13609 diacylglycerol glucosyltransferase; Provisional Back     alignment and domain information
>PLN02605 monogalactosyldiacylglycerol synthase Back     alignment and domain information
>TIGR03646 YtoQ_fam YtoQ family protein Back     alignment and domain information
>PRK13608 diacylglycerol glucosyltransferase; Provisional Back     alignment and domain information
>PRK13660 hypothetical protein; Provisional Back     alignment and domain information
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis Back     alignment and domain information
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase Back     alignment and domain information
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed Back     alignment and domain information
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1 Back     alignment and domain information
>TIGR01426 MGT glycosyltransferase, MGT family Back     alignment and domain information
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin Back     alignment and domain information
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed Back     alignment and domain information
>PRK10565 putative carbohydrate kinase; Provisional Back     alignment and domain information
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed Back     alignment and domain information
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG Back     alignment and domain information
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional Back     alignment and domain information
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional Back     alignment and domain information
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms] Back     alignment and domain information
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR00215 lpxB lipid-A-disaccharide synthase Back     alignment and domain information
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query187
2a33_A215 X-Ray Structure Of A Lysine Decarboxylase-Like Prot 4e-47
1ydh_A216 X-Ray Structure Of A Lysine Decarboxylase-Like Prot 1e-33
1t35_A191 Crystal Structure Of A Hypothetical Protein Yvdd- A 5e-23
3qua_A199 Crystal Structure Of A Putative Uncharacterized Pro 4e-18
3sbx_A189 Crystal Structure Of A Putative Uncharacterized Pro 2e-13
>pdb|2A33|A Chain A, X-Ray Structure Of A Lysine Decarboxylase-Like Protein From Arabidopsis Thaliana Gene At2g37210 Length = 215 Back     alignment and structure 
Iteration: 1

 Score =  183 bits (465), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 97/145 (66%), Positives = 116/145 (80%)
Query: 2   EMEGKIQKNSRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLV 61
           E++G+  + S+F+R+CVFCGSS GK++ Y DAA+DL +ELV+R +DLVYGGGSIGL GLV
Sbjct: 2   EIKGESXQKSKFRRICVFCGSSQGKKSSYQDAAVDLGNELVSRNIDLVYGGGSIGLXGLV 61
Query: 62  SKAXXXXXXXXXXXXPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGYG 121
           S+A            P+TL  +E+TGETVGEVR VAD HQRKAE A+HSD FIALPGGYG
Sbjct: 62  SQAVHDGGRHVIGIIPKTLXPRELTGETVGEVRAVADXHQRKAEXAKHSDAFIALPGGYG 121
Query: 122 TLEELLEVITWAQLGIHDKPVCVAN 146
           TLEELLEVITWAQLGIHDKPV + N
Sbjct: 122 TLEELLEVITWAQLGIHDKPVGLLN 146
>pdb|1YDH|A Chain A, X-Ray Structure Of A Lysine Decarboxylase-Like Protein From Arabidopsis Thaliana Gene At5g11950 Length = 216 Back     alignment and structure
>pdb|1T35|A Chain A, Crystal Structure Of A Hypothetical Protein Yvdd- A Putative Lysine Decarboxylase Length = 191 Back     alignment and structure
>pdb|3QUA|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein And Possible Molybdenum Cofactor Protein From Mycobacterium Smegmatis Length = 199 Back     alignment and structure
>pdb|3SBX|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein From Mycobacterium Marinum Bound To Adenosine 5'-Monophosphate Amp Length = 189 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query187
2a33_A215 Hypothetical protein; structural genomics, protein 3e-83
1ydh_A216 AT5G11950; structural genomics, protein structure 3e-81
1t35_A191 Hypothetical protein YVDD, putative lysine decarbo 3e-80
3qua_A199 Putative uncharacterized protein; structural genom 7e-78
3sbx_A189 Putative uncharacterized protein; structural genom 5e-77
1weh_A171 Conserved hypothetical protein TT1887; rossman fol 2e-51
1wek_A217 Hypothetical protein TT1465; rossman fold, structu 2e-49
1rcu_A195 Conserved hypothetical protein VT76; structural ge 6e-47
2iz6_A176 Molybdenum cofactor carrier protein; metal transpo 2e-45
3bq9_A 460 Predicted rossmann fold nucleotide-binding domain 4e-24
3gh1_A 462 Predicted nucleotide-binding protein; structural g 2e-22
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A Length = 215 Back     alignment and structure
 Score =  244 bits (624), Expect = 3e-83
 Identities = 111/146 (76%), Positives = 131/146 (89%)

Query: 1   MEMEGKIQKNSRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGL 60
           ME++G+  + S+F+R+CVFCGSS GK++ Y DAA+DL +ELV+R +DLVYGGGSIGLMGL
Sbjct: 1   MEIKGESMQKSKFRRICVFCGSSQGKKSSYQDAAVDLGNELVSRNIDLVYGGGSIGLMGL 60

Query: 61  VSKAVHHGGGNVIGIIPRTLMNKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGY 120
           VS+AVH GG +VIGIIP+TLM +E+TGETVGEVR VADMHQRKAEMA+HSD FIALPGGY
Sbjct: 61  VSQAVHDGGRHVIGIIPKTLMPRELTGETVGEVRAVADMHQRKAEMAKHSDAFIALPGGY 120

Query: 121 GTLEELLEVITWAQLGIHDKPVCVAN 146
           GTLEELLEVITWAQLGIHDKPV + N
Sbjct: 121 GTLEELLEVITWAQLGIHDKPVGLLN 146
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A Length = 216 Back     alignment and structure
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1 Length = 191 Back     alignment and structure
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str} Length = 199 Back     alignment and structure
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M} Length = 189 Back     alignment and structure
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1 Length = 171 Back     alignment and structure
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1 Length = 217 Back     alignment and structure
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1 Length = 195 Back     alignment and structure
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A Length = 176 Back     alignment and structure
>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica} Length = 460 Back     alignment and structure
>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A Length = 462 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query187
3sbx_A189 Putative uncharacterized protein; structural genom 100.0
3qua_A199 Putative uncharacterized protein; structural genom 100.0
1ydh_A216 AT5G11950; structural genomics, protein structure 100.0
2a33_A215 Hypothetical protein; structural genomics, protein 100.0
1t35_A191 Hypothetical protein YVDD, putative lysine decarbo 100.0
1wek_A217 Hypothetical protein TT1465; rossman fold, structu 100.0
1weh_A171 Conserved hypothetical protein TT1887; rossman fol 100.0
3gh1_A 462 Predicted nucleotide-binding protein; structural g 100.0
1rcu_A195 Conserved hypothetical protein VT76; structural ge 100.0
3bq9_A 460 Predicted rossmann fold nucleotide-binding domain 100.0
2iz6_A176 Molybdenum cofactor carrier protein; metal transpo 100.0
3maj_A382 DNA processing chain A; MCSG, PSI-2, structural ge 99.52
3uqz_A288 DNA processing protein DPRA; SAM and rossmann fold 99.49
2nx2_A181 Hypothetical protein YPSA; structural genomics, un 98.2
3imk_A158 Putative molybdenum carrier protein; YP_461806.1, 98.06
2f62_A161 Nucleoside 2-deoxyribosyltransferase; SGPP, struct 97.05
2o6l_A170 UDP-glucuronosyltransferase 2B7; drug metabolism, 96.57
2khz_A165 C-MYC-responsive protein RCL; flexible loop, nucle 96.5
3ehd_A162 Uncharacterized conserved protein; PSI,MCSG,PF0501 96.36
3s2u_A365 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape 96.21
4fyk_A152 Deoxyribonucleoside 5'-monophosphate N-glycosidas; 95.61
1f8y_A157 Nucleoside 2-deoxyribosyltransferase; active site, 94.98
3rsc_A415 CALG2; TDP, enediyne, structural genomics, PSI-2, 94.66
3otg_A412 CALG1; calicheamicin, TDP, structural genomics, PS 94.62
3h4t_A404 Glycosyltransferase GTFA, glycosyltransferase; van 94.34
2iya_A424 OLEI, oleandomycin glycosyltransferase; carbohydra 94.3
2p6p_A384 Glycosyl transferase; X-RAY-diffraction,urdamycina 94.11
1iir_A415 Glycosyltransferase GTFB; rossmann fold; 1.80A {Am 94.0
3hbm_A282 UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter je 93.88
3ia7_A402 CALG4; glycosysltransferase, calicheamicin, enediy 93.85
1rrv_A416 Glycosyltransferase GTFD; GT-B, glycosyltransferas 93.24
2yjn_A441 ERYCIII, glycosyltransferase; transferase, cytochr 92.84
1s2d_A167 Purine trans deoxyribosylase; ribosylate intermedi 92.33
2jzc_A224 UDP-N-acetylglucosamine transferase subunit ALG13; 90.88
2iyf_A430 OLED, oleandomycin glycosyltransferase; antibiotic 90.68
4fzr_A398 SSFS6; structural genomics, PSI-biology, protein s 90.23
3ufx_B397 Succinyl-COA synthetase beta subunit; ATP-grAsp fo 86.42
3tsa_A391 SPNG, NDP-rhamnosyltransferase; glycosyltransferas 85.88
3oti_A398 CALG3; calicheamicin, TDP, structural genomics, PS 84.64
4amg_A400 Snogd; transferase, polyketide biosynthesis, GT1 f 83.98
1f0k_A364 MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pe 83.94
2pq6_A482 UDP-glucuronosyl/UDP-glucosyltransferase; glycosyl 80.27
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M} Back     alignment and structure
Probab=100.00  E-value=1e-50  Score=329.36  Aligned_cols=170  Identities=32%  Similarity=0.515  Sum_probs=157.0

Q ss_pred             cCCCCcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHhcCCeEEEEeCcccccccccC
Q 029797            8 QKNSRFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITG   87 (187)
Q Consensus         8 ~~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~~~~~~e~~~   87 (187)
                      |+..+ ++|||||||| +.+++|++.|++||++||++|+.||||||+.|+|+|++++|+++||+|+||+|..+..++.++
T Consensus         9 ~~~~~-~~I~Vfg~s~-~~~~~~~~~A~~lg~~la~~g~~lv~GGG~~GlM~a~~~ga~~~GG~viGv~p~~l~~~e~~~   86 (189)
T 3sbx_A            9 DEPGR-WTVAVYCAAA-PTHPELLELAGAVGAAIAARGWTLVWGGGHVSAMGAVSSAARAHGGWTVGVIPKMLVHRELAD   86 (189)
T ss_dssp             ----C-CEEEEECCSS-CCCHHHHHHHHHHHHHHHHTTCEEEECCBCSHHHHHHHHHHHTTTCCEEEEEETTTTTTTTBC
T ss_pred             CCCCC-eEEEEEEeCC-CCChHHHHHHHHHHHHHHHCCCEEEECCCccCHHHHHHHHHHHcCCcEEEEcCchhhhcccCC
Confidence            34444 6999999999 889999999999999999999999999998899999999999999999999999877778888


Q ss_pred             CCCceEeecCCHHHHHHHHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCC--chHHHHHhHHhCCCc
Q 029797           88 ETVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKS--PLMMALSSLLSATSL  165 (187)
Q Consensus        88 ~~~~~~~~~~~m~~R~~~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~--~l~~~~~~~~~~~~i  165 (187)
                      +.+++.+.+.+|++||.+|+++||+||+||||+|||+|++++|+|.|++.|+|||+++|.+||  ++.+|++++.++|++
T Consensus        87 ~~~~~~i~~~~~~~Rk~~m~~~sda~IalPGG~GTLdElfe~lt~~qlg~~~kPvvlln~~gfw~~l~~~l~~~~~~Gfi  166 (189)
T 3sbx_A           87 HDADELVVTETMWERKQVMEDRANAFITLPGGVGTLDELLDVWTEGYLGMHDKSIVVLDPWGHFDGLRAWLSELADTGYV  166 (189)
T ss_dssp             TTCSEEEEESSHHHHHHHHHHHCSEEEECSCCHHHHHHHHHHHHHHHTTSCCCCEEEECTTCTTHHHHHHHHHHHHTTSS
T ss_pred             CCCCeeEEcCCHHHHHHHHHHHCCEEEEeCCCcchHHHHHHHHHHHHhcccCCCEEEecCCccchHHHHHHHHHHHCCCC
Confidence            888899999999999999999999999999999999999999999999999999999999888  589999999999988


Q ss_pred             CC--------CCCHHHHHHHHH
Q 029797          166 SQ--------HQTLKNLFKNLR  179 (187)
Q Consensus       166 ~~--------~~t~~e~v~~l~  179 (187)
                      ..        .+||||+++.|+
T Consensus       167 ~~~~~~~i~~~d~~ee~~~~l~  188 (189)
T 3sbx_A          167 SRTAMERLIVVDNLDDALQACA  188 (189)
T ss_dssp             CHHHHHHEEEESSHHHHHHHHC
T ss_pred             CHHHcCeEEEeCCHHHHHHHhc
Confidence            65        499999999885
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str} Back     alignment and structure
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A Back     alignment and structure
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A Back     alignment and structure
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1 Back     alignment and structure
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1 Back     alignment and structure
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1 Back     alignment and structure
>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A Back     alignment and structure
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1 Back     alignment and structure
>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica} Back     alignment and structure
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A Back     alignment and structure
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris} Back     alignment and structure
>3uqz_A DNA processing protein DPRA; SAM and rossmann fold, DNA processing protein A, DNA binding; HET: DNA SO4; 2.70A {Streptococcus pneumoniae} Back     alignment and structure
>2nx2_A Hypothetical protein YPSA; structural genomics, unknown function, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: c.129.1.2 Back     alignment and structure
>3imk_A Putative molybdenum carrier protein; YP_461806.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE MES PG4 PG6; 1.45A {Syntrophus aciditrophicus SB} Back     alignment and structure
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A* Back     alignment and structure
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens} Back     alignment and structure
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A* Back     alignment and structure
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis} Back     alignment and structure
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa} Back     alignment and structure
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A* Back     alignment and structure
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A* Back     alignment and structure
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A* Back     alignment and structure
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A* Back     alignment and structure
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A* Back     alignment and structure
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus} Back     alignment and structure
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae} Back     alignment and structure
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5 Back     alignment and structure
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A* Back     alignment and structure
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora} Back     alignment and structure
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5 Back     alignment and structure
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea} Back     alignment and structure
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A* Back     alignment and structure
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A Back     alignment and structure
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus} Back     alignment and structure
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A* Back     alignment and structure
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus} Back     alignment and structure
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A* Back     alignment and structure
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A* Back     alignment and structure
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A* Back     alignment and structure
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A* Back     alignment and structure
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 187
d2q4oa1183 c.129.1.1 (A:8-190) Hypothetical protein At2g37210 1e-39
d1ydhb_181 c.129.1.1 (B:) Hypothetical protein At5g11950 {Tha 1e-38
d1t35a_179 c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus 1e-36
d1weka_208 c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA16 8e-24
d1rcua_170 c.129.1.1 (A:) Hypothetical protein TM1055 {Thermo 1e-23
d1weha_171 c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA02 3e-23
>d1ydhb_ c.129.1.1 (B:) Hypothetical protein At5g11950 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 181 Back     information, alignment and structure
>d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus subtilis [TaxId: 1423]} Length = 179 Back     information, alignment and structure
>d1weka_ c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA1644) {Thermus thermophilus [TaxId: 274]} Length = 208 Back     information, alignment and structure
>d1rcua_ c.129.1.1 (A:) Hypothetical protein TM1055 {Thermotoga maritima [TaxId: 2336]} Length = 170 Back     information, alignment and structure
>d1weha_ c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA0294) {Thermus thermophilus [TaxId: 274]} Length = 171 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query187
d1ydhb_181 Hypothetical protein At5g11950 {Thale cress (Arabi 100.0
d2q4oa1183 Hypothetical protein At2g37210/T2N18.3 {Thale cres 100.0
d1t35a_179 Hypothetical protein YvdD {Bacillus subtilis [TaxI 100.0
d1weka_208 Hypothetical protein TT1465 (TTHA1644) {Thermus th 100.0
d1weha_171 Hypothetical protein TT1887 (TTHA0294) {Thermus th 100.0
d1rcua_170 Hypothetical protein TM1055 {Thermotoga maritima [ 100.0
d2nx2a1177 Hypothetical protein YpsA {Bacillus subtilis [TaxI 97.31
d2f62a1152 Nucleoside 2-deoxyribosyltransferase {Trypanosoma 96.18
d1s2da_167 Purine transdeoxyribosylase {Lactobacillus helveti 95.78
d1e3ja2170 Ketose reductase (sorbitol dehydrogenase) {Silverl 95.59
d1f8ya_156 Nucleoside 2-deoxyribosyltransferase {Lactobacillu 95.36
d1rjwa2168 Alcohol dehydrogenase {Bacillus stearothermophilus 92.76
d1rrva_401 TDP-vancosaminyltransferase GftD {Amycolatopsis or 90.7
d1iira_401 UDP-glucosyltransferase GtfB {Amycolatopsis orient 90.27
d1pl8a2171 Ketose reductase (sorbitol dehydrogenase) {Human ( 90.12
d1llua2166 Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax 90.06
d1f0ka_351 Peptidoglycan biosynthesis glycosyltransferase Mur 87.84
d1kyha_ 275 Hypothetical protein YxkO {Bacillus subtilis [TaxI 84.63
d2csua3163 Acetate-CoA ligase alpha chain, AcdA, domains 2 an 83.06
d2bona1295 Lipid kinase YegS {Escherichia coli [TaxId: 562]} 80.43
>d1ydhb_ c.129.1.1 (B:) Hypothetical protein At5g11950 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein At5g11950
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.4e-51  Score=330.38  Aligned_cols=170  Identities=55%  Similarity=0.950  Sum_probs=162.1

Q ss_pred             CcceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCcccHHHHHHHHHHhcCCeEEEEeCcccccccccCCCCc
Q 029797           12 RFKRVCVFCGSSTGKRNCYSDAAIDLAHELVARRLDLVYGGGSIGLMGLVSKAVHHGGGNVIGIIPRTLMNKEITGETVG   91 (187)
Q Consensus        12 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~la~~g~~lv~GGg~~GlM~a~~~gA~~~gG~viGI~p~~~~~~e~~~~~~~   91 (187)
                      ||++||||||||.+.+++|++.|++||+.||++|+.+|||||+.|+|+|+++||+++||+|+||+|..+.+.+..++.++
T Consensus         1 ~~k~v~Vf~gs~~~~~~~~~~~a~~lg~~La~~g~~lv~GGG~~GlMga~a~ga~~~gg~viGv~~~~l~~~e~~~~~~~   80 (181)
T d1ydhb_           1 RFRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLMGLISRRVYEGGLHVLGIIPKALMPIEISGETVG   80 (181)
T ss_dssp             CCSEEEEECCSCCCSSTHHHHHHHHHHHHHHHTTCEEEECCCSSHHHHHHHHHHHHTTCCEEEEEEGGGHHHHCCSCCCS
T ss_pred             CCcEEEEEccCCCCcCCHHHHHHHHHHHHHHHCCCeEEECCCchHHHHHHHHhHhhcCCcccccchhhhhhhhcCCcccC
Confidence            57899999999999999999999999999999999999999999999999999999999999999998888888899999


Q ss_pred             eEeecCCHHHHHHHHHHhCCEEEEeCCChhhHHHHHHHHHHHHhCCCCCcEEEEcCCCC--chHHHHHhHHhCCCcCC--
Q 029797           92 EVRPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVCVANKPKS--PLMMALSSLLSATSLSQ--  167 (187)
Q Consensus        92 ~~~~~~~m~~R~~~m~~~sDa~IvlpGG~GTL~El~~a~~~~~lg~~~kPvill~~~g~--~l~~~~~~~~~~~~i~~--  167 (187)
                      +++.+++|++||..|++.|||||+||||+|||+|++++|+|.|++.|+||++++|.+||  ++.+|++++++.+++..  
T Consensus        81 ~~~~~~~~~~Rk~~m~~~sdafIvlPGG~GTLdEl~e~l~l~ql~~~~kpiiiln~~gfw~~l~~~l~~~~~~g~i~~~~  160 (181)
T d1ydhb_          81 DVRVVADMHERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGA  160 (181)
T ss_dssp             EEEEESSHHHHHHHHHHHCSEEEECSCSHHHHHHHHHHHHHHHHTSCCCEEEEECGGGTTHHHHHHHHHHHHHTSSCHHH
T ss_pred             cceeeccHHHHHHHHHHhCeeEEEeCCccchHHHHHHHHHHHHhcccCCCeEEEecCccHHHHHHHHHHHHHCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999988  58999999999888764  


Q ss_pred             ------CCCHHHHHHHHHhh
Q 029797          168 ------HQTLKNLFKNLRST  181 (187)
Q Consensus       168 ------~~t~~e~v~~l~~~  181 (187)
                            ++||||++++|+++
T Consensus       161 ~~~~~~~d~~ee~~~~l~~~  180 (181)
T d1ydhb_         161 RNIVVSAPTAKELMEKMEEY  180 (181)
T ss_dssp             HTTEEEESSHHHHHHHHHHC
T ss_pred             cCeEEEeCCHHHHHHHHHhh
Confidence                  49999999999975
>d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1weka_ c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA1644) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1weha_ c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA0294) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rcua_ c.129.1.1 (A:) Hypothetical protein TM1055 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2nx2a1 c.129.1.2 (A:1-177) Hypothetical protein YpsA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1s2da_ c.23.14.1 (A:) Purine transdeoxyribosylase {Lactobacillus helveticus [TaxId: 1587]} Back     information, alignment and structure
>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Back     information, alignment and structure
>d1f8ya_ c.23.14.1 (A:) Nucleoside 2-deoxyribosyltransferase {Lactobacillus leichmannii [TaxId: 28039]} Back     information, alignment and structure
>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kyha_ c.72.1.4 (A:) Hypothetical protein YxkO {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]} Back     information, alignment and structure