Citrus Sinensis ID: 029817

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------
Protein Sequence
MSVTTQTQEPSQLQPGSSTSKPGSKKRTRQNDTPFRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRKDIQVAAAKAAALVEVGDRIESECSGSGGEPDCGDWWERETTASDEVKVAPLPSPPRFDSDIGELYCWMDDDNFLLGSCLEL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEEcccccccEEEcccccHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccEEEcccccEEEEEEccccccEEEEcccccHHHHHHHHHHHHHHHHccccEEccccHHHcccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHcccccccccccHccccccccHHHHHcccHccc
Coil and Loop (DISEMBL)
msvttqtqepsqlqpgsstskpgskkrtrqndtpfrgvrkrrwgsyvseirlpgektriwlgsfgSAEKAARAYDSAAFYLKGnlatlnfpasagalprpescsrKDIQVAAAKAAALVEVGdriesecsgsggepdcgdwwerettasdevkvaplpspprfdsdigelycwmdddnfllgsclel
Flexible Loop (DISEMBL)
msvttqtqepsqlqpgsstskpgskkrtrqndtpfrgvrkrrwgsyvseirlpgektriWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRKDIQVAAAKAAALVEVGDriesecsgsggepdcgDWWERETTasdevkvaplpspprFDSDIGELYCWMDDDNFLLGSCLEL
Low Complexity Region (SEG)
MSVTTQTQEPSQLQpgsstskpgskkrtrQNDTPFRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRKDIQVaaakaaaLVEVGDRIESECSGSGGEPDCGDWWERETTASDEVKVAPLPSPPRFDSDIGELYCWMDDDNFLLGSCLEL
Disordered region (IsUnstruct)
**************************************RKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPAS**************IQVAAAKAAALVEVGD**************CGDWWE*********************SDIGELYCWMDDDNFLLGSCL**
Disordered Region (DISOPRED)
************************************GVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGA*********************************************************************DIGELYCWMDDDNFLLGSCLEL
Disordered Region (DISEMBL)
********************************TPFRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRKDIQVAAAKAAALVEVGDRI***********DCGDWWERETTASDEVKVAPLPSPPRFDSDIGELYCWMDDDNFLLGSCLEL
Disordered Region (DISPRO)
********************************TPFRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRKDIQVAAAKAAAL*************************************PLPSPPRFDSDIGELYCWMDDDNFLLGSCLEL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVTTQTQEPSQLQPGSSTSKPGSKKRTRQNDTPFRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRKDIQVAAAKAAALVEVGDRIESECSGSGGEPDCGDWWERETTASDEVKVAPLPSPPRFDSDIGELYCWMDDDNFLLGSCLEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	187	2.2.26 [Sep-21-2011]
Q39127	218	Ethylene-responsive trans	yes	no	0.449	0.385	0.630	6e-23
Q9M210	256	Ethylene-responsive trans	no	no	0.427	0.312	0.612	1e-21
Q9LYD3	236	Dehydration-responsive el	no	no	0.540	0.427	0.514	4e-21
Q9M080	221	Ethylene-responsive trans	no	no	0.502	0.425	0.526	4e-21
Q8LBQ7	295	Ethylene-responsive trans	no	no	0.443	0.281	0.602	5e-21
Q1ECI2	192	Ethylene-responsive trans	no	no	0.550	0.536	0.508	1e-20
Q9C9I2	183	Ethylene-responsive trans	no	no	0.459	0.469	0.549	1e-20
Q9ZQP3	194	Ethylene-responsive trans	no	no	0.401	0.386	0.626	4e-20
Q9LU18	236	Ethylene-responsive trans	no	no	0.401	0.317	0.6	2e-19
Q9SUK8	179	Ethylene-responsive trans	no	no	0.486	0.508	0.548	2e-19

>sp|Q39127|TINY_ARATH Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana GN=TINY PE=2 SV=1

 Score =  107 bits (266), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 53/84 (63%), Positives = 63/84 (75%)

Query: 35  FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASA 94
           +RGVRKR WG +VSEIR P +K+RIWLG+F S E AARA+D AA  +KG  A LNFP  A
Sbjct: 36  YRGVRKRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGASAILNFPDLA 95

Query: 95  GALPRPESCSRKDIQVAAAKAAAL 118
           G+ PRP S S +DIQVAA KAA +
Sbjct: 96  GSFPRPSSLSPRDIQVAALKAAHM 119

Putative transcriptional activator.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9M210|ERF35_ARATH Ethylene-responsive transcription factor ERF035 OS=Arabidopsis thaliana GN=ERF035 PE=2 SV=1

 Score =  102 bits (255), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/80 (61%), Positives = 60/80 (75%)

Query: 30  QNDTPFRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLN 89
           +N T +RGVR R WG +VSEIR P +K+RIWLG++ +AE AARA+D AA  +KGN   LN
Sbjct: 66  KNPTSYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGNSGFLN 125

Query: 90  FPASAGALPRPESCSRKDIQ 109
           FP  +G LPRP SCS KDIQ
Sbjct: 126 FPELSGLLPRPVSCSPKDIQ 145

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYD3|DREB3_ARATH Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1

 Score =  100 bits (250), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 54/105 (51%), Positives = 68/105 (64%), Gaps = 4/105 (3%)

Query: 18  STSKPGSKKRTRQNDT----PFRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARA 73
           S ++   KK  R  D+     +RGVR R WG +VSEIR P +K+RIWLG+F + E AARA
Sbjct: 30  SKAEQSEKKTKRGRDSGKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARA 89

Query: 74  YDSAAFYLKGNLATLNFPASAGALPRPESCSRKDIQVAAAKAAAL 118
           +D AA  +KG  A LNFP  A + PRP S S +DIQ AA KAA +
Sbjct: 90  HDVAALSIKGTAAILNFPELADSFPRPVSLSPRDIQTAALKAAHM 134

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M080|ERF43_ARATH Ethylene-responsive transcription factor ERF043 OS=Arabidopsis thaliana GN=ERF043 PE=2 SV=1

 Score =  100 bits (250), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 50/95 (52%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 25  KKRTRQNDTP-FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKG 83
           K++   N  P +RGVR R WG +VSEIR P +K+RIWLG+F +AE A RA+D AA  +KG
Sbjct: 8   KEKKENNKQPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAMRAHDVAAMSIKG 67

Query: 84  NLATLNFPASAGALPRPESCSRKDIQVAAAKAAAL 118
             A LNFP  +  LPRP S S +D++ AA KAA +
Sbjct: 68  TSAILNFPELSKLLPRPVSLSPRDVRAAATKAALM 102

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LBQ7|ERF34_ARATH Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana GN=ERF034 PE=2 SV=2

 Score =  100 bits (249), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 50/83 (60%), Positives = 61/83 (73%)

Query: 35  FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASA 94
           +RGVR R WG +VSEIR P +K+RIWLG++ +AE AARA+D AA  +KG  A LNFP  A
Sbjct: 100 YRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGTTAYLNFPKLA 159

Query: 95  GALPRPESCSRKDIQVAAAKAAA 117
           G LPRP + S KDIQ AA+ AA 
Sbjct: 160 GELPRPVTNSPKDIQAAASLAAV 182

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q1ECI2|ERF23_ARATH Ethylene-responsive transcription factor ERF023 OS=Arabidopsis thaliana GN=ERF023 PE=2 SV=1

 Score = 99.4 bits (246), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/112 (50%), Positives = 70/112 (62%), Gaps = 9/112 (8%)

Query: 35  FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASA 94
           + GVRKRRWG +VSEIR P +K+RIWLGSF   E AA+AYD AAF LKG  A LNFP   
Sbjct: 45  YHGVRKRRWGKWVSEIREPRKKSRIWLGSFPVPEMAAKAYDVAAFCLKGRKAQLNFPEEI 104

Query: 95  GALPRPESCSRKDIQ---VAAAKAAALVEVGDRIESECSGSGGEPDCGDWWE 143
             LPRP +C+ +DIQ     AA A  ++++GD          G  D  D+WE
Sbjct: 105 EDLPRPSTCTPRDIQVAAAKAANAVKIIKMGD------DDVAGIDDGDDFWE 150

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9I2|ERF21_ARATH Ethylene-responsive transcription factor ERF021 OS=Arabidopsis thaliana GN=ERF021 PE=2 SV=1

 Score = 99.4 bits (246), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/91 (54%), Positives = 61/91 (67%), Gaps = 5/91 (5%)

Query: 30  QND-----TPFRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGN 84
           QND     + +RGVRKR+WG +VSEIR PG K RIWLGSF + E AA AYD AAF+ +G 
Sbjct: 14  QNDGKGVPSAYRGVRKRKWGKWVSEIREPGTKNRIWLGSFETPEMAATAYDVAAFHFRGR 73

Query: 85  LATLNFPASAGALPRPESCSRKDIQVAAAKA 115
            A LNFP  A +LPRP   S   I++A  +A
Sbjct: 74  EARLNFPELASSLPRPADSSSDSIRMAVHEA 104

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQP3|ERF38_ARATH Ethylene-responsive transcription factor ERF038 OS=Arabidopsis thaliana GN=ERF038 PE=2 SV=1

 Score = 97.4 bits (241), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 47/75 (62%), Positives = 55/75 (73%)

Query: 35  FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASA 94
           FRGVR R+WG +VSEIR P +K+RIWLG+F +AE AARA+D AA  +KG  A LNFP  A
Sbjct: 45  FRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTAEMAARAHDVAALAIKGGSAHLNFPELA 104

Query: 95  GALPRPESCSRKDIQ 109
             LPRP S   KDIQ
Sbjct: 105 YHLPRPASADPKDIQ 119

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LU18|ERF36_ARATH Ethylene-responsive transcription factor ERF036 OS=Arabidopsis thaliana GN=ERF036 PE=2 SV=2

 Score = 95.5 bits (236), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 54/75 (72%)

Query: 35  FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASA 94
           +RGVR R WG +VSEIR P +KTRIWLG+F +A+ AARA+D AA  +KG+ A LNFP  A
Sbjct: 61  YRGVRMRSWGKWVSEIRQPRKKTRIWLGTFVTADMAARAHDVAALTIKGSSAVLNFPELA 120

Query: 95  GALPRPESCSRKDIQ 109
              PRP S S  DIQ
Sbjct: 121 SLFPRPASSSPHDIQ 135

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUK8|ERF39_ARATH Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana GN=ERF039 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/93 (54%), Positives = 63/93 (67%), Gaps = 2/93 (2%)

Query: 17  SSTSKPGSKKRTRQNDTPFRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDS 76
           SS +K   K  ++Q +  FRGVR R+WG +VSEIR P +K+RIWLG+F + E AARA+D 
Sbjct: 24  SSKTKNEQKGVSKQPN--FRGVRMRQWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDV 81

Query: 77  AAFYLKGNLATLNFPASAGALPRPESCSRKDIQ 109
           AA  +KG  A LNFP  A  LPRP S   KDIQ
Sbjct: 82  AALAIKGGSAHLNFPELAYHLPRPASADPKDIQ 114

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
224149524	193	AP2/ERF domain-containing transcription	0.957	0.927	0.578	7e-47
224127766	193	AP2/ERF domain-containing transcription	0.957	0.927	0.578	1e-46
357470741	429	Ethylene-responsive transcription factor	0.593	0.258	0.627	3e-32
356531728	164	PREDICTED: dehydration-responsive elemen	0.796	0.908	0.518	2e-31
449436878	227	PREDICTED: ethylene-responsive transcrip	0.620	0.511	0.508	3e-25
225459937	174	PREDICTED: dehydration-responsive elemen	0.454	0.488	0.752	3e-24
255550908	270	Transcriptional factor TINY, putative [R	0.647	0.448	0.491	8e-23
356495879	263	PREDICTED: ethylene-responsive transcrip	0.695	0.494	0.477	2e-22
255549882	241	Transcriptional factor TINY, putative [R	0.459	0.356	0.627	4e-22
449517245	235	PREDICTED: ethylene-responsive transcrip	0.491	0.391	0.576	1e-21

>gi|224149524|ref|XP_002336822.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|148372095|gb|ABQ62979.1| TINY-like protein [Populus trichocarpa] gi|222836958|gb|EEE75351.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  192 bits (487), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 110/190 (57%), Positives = 129/190 (67%), Gaps = 11/190 (5%)

Query: 7   TQEPSQLQPGSSTSKP----GSKKRTRQNDTPFRGVRKRRWGSYVSEIRLPGEKTRIWLG 62
           TQEP  L+     S+P     SKKRTRQ D PF GVRKR WG YVSEIRLPG+KTR+WLG
Sbjct: 4   TQEPPGLKTNPLESEPTSERKSKKRTRQRDAPFHGVRKRSWGRYVSEIRLPGKKTRVWLG 63

Query: 63  SFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRKDIQVAAAKAAALVE-- 120
           SFGS E AARA+DSAAF+LKGN A LNFP S G+LPRP+SCS KDIQ+AAAKAA   +  
Sbjct: 64  SFGSPEMAARAHDSAAFFLKGNSACLNFPDSVGSLPRPKSCSSKDIQLAAAKAATGFDES 123

Query: 121 -VGDRIESECSGSGGEPDCGDWW---ERETTASDEVKVAPLPSPPRFDSDIG-ELYCWMD 175
            VG+ +  E   SGGEPD   W    E ET + +EVK  PL SP RFDS  G +   +M+
Sbjct: 124 RVGNGVGFEDCESGGEPDSSIWLGLGEIETVSYEEVKRTPLLSPLRFDSVSGNDEVLYMN 183

Query: 176 DDNFLLGSCL 185
           D+  L  + L
Sbjct: 184 DEELLFATYL 193

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127766|ref|XP_002329172.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|148372093|gb|ABQ62978.1| TINY-like protein [Populus trichocarpa] gi|222870953|gb|EEF08084.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 110/190 (57%), Positives = 129/190 (67%), Gaps = 11/190 (5%)

Query: 7   TQEPSQLQPGSSTSKP----GSKKRTRQNDTPFRGVRKRRWGSYVSEIRLPGEKTRIWLG 62
           TQEP  L+     S+P     SKKRTRQ D PF GVRKR WG YVSEIRLPG+KTR+WLG
Sbjct: 4   TQEPPGLKTNPLESEPTSERKSKKRTRQRDAPFHGVRKRSWGRYVSEIRLPGKKTRVWLG 63

Query: 63  SFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRKDIQVAAAKAAALVE-- 120
           SFGS E AARA+DSAAF+LKGN A LNFP S G+LPRP+SCS KDIQ+AAAKAA   +  
Sbjct: 64  SFGSPEMAARAHDSAAFFLKGNSACLNFPDSVGSLPRPKSCSSKDIQLAAAKAATGFDES 123

Query: 121 -VGDRIESECSGSGGEPDCGDWW---ERETTASDEVKVAPLPSPPRFDSDIG-ELYCWMD 175
            VG+ +  E   SGGEPD   W    E ET + +EVK  PL SP RFDS  G +   +M+
Sbjct: 124 RVGNGVGFEDCESGGEPDGSIWLGLGEIETVSYEEVKRTPLLSPLRFDSVSGNDEVLYMN 183

Query: 176 DDNFLLGSCL 185
           D+  L  + L
Sbjct: 184 DEELLFATYL 193

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357470741|ref|XP_003605655.1| Ethylene-responsive transcription factor [Medicago truncatula] gi|355506710|gb|AES87852.1| Ethylene-responsive transcription factor [Medicago truncatula]

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 74/118 (62%), Positives = 90/118 (76%), Gaps = 7/118 (5%)

Query: 1   MSVTTQTQEPSQLQPGSSTSKPGS--KKRTRQNDTPFRGVRKRRWGSYVSEIRLPGEKTR 58
           MS+T +++  SQ +     ++PGS  K+ +R+ D+ F GVRKR WG YVSEIRLPG+KTR
Sbjct: 87  MSITKESESQSQAE-----ARPGSITKRSSRKGDSVFHGVRKRSWGRYVSEIRLPGQKTR 141

Query: 59  IWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRKDIQVAAAKAA 116
           IWLGSF SAE AARAYDSAAF+LKGN A+LNFP     LPRP S SR+DIQ AA+KAA
Sbjct: 142 IWLGSFESAEMAARAYDSAAFFLKGNSASLNFPEEVEFLPRPLSSSRRDIQSAASKAA 199

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531728|ref|XP_003534428.1| PREDICTED: dehydration-responsive element-binding protein 3-like [Glycine max]

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/166 (51%), Positives = 104/166 (62%), Gaps = 17/166 (10%)

Query: 24  SKKRTRQNDTPFRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKG 83
           S+K  R+  + FRGVRKR WG YVSEIRLPG+KTRIWLGSFGS E AARAYDSAAF+LKG
Sbjct: 5   SEKAKRKRQSAFRGVRKRSWGRYVSEIRLPGQKTRIWLGSFGSPEMAARAYDSAAFFLKG 64

Query: 84  NLATLNFPASAGALPRPESCSRKDIQVAAAKAAALVEVGDRIESECSGSGGEPDCGDWWE 143
             ATLNFP    +LPRP S SR+DIQ AAA+ AAL     + E E   +           
Sbjct: 65  TSATLNFPDLVHSLPRPLSSSRRDIQSAAAE-AALHSPPPKEEQESIFT----------S 113

Query: 144 RETTASDEVKVAPLPSPPRFDSDIGELYCW-----MDDDNFLLGSC 184
             T++  +V  APL SP R DS  G+ + W      +DD  ++GS 
Sbjct: 114 TTTSSFHDVMEAPLMSPLRVDSTFGD-FSWDQLFDFNDDILIVGST 158

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436878|ref|XP_004136219.1| PREDICTED: ethylene-responsive transcription factor ERF043-like [Cucumis sativus]

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 59/116 (50%), Positives = 80/116 (68%)

Query: 3   VTTQTQEPSQLQPGSSTSKPGSKKRTRQNDTPFRGVRKRRWGSYVSEIRLPGEKTRIWLG 62
           +++     +Q  P SST+   + KR R +D+ +RGVR R WG +VSEIR P +K+RIWLG
Sbjct: 10  ISSTNNNHTQPNPPSSTTTTNNNKRVRPSDSIYRGVRMRAWGKWVSEIREPRKKSRIWLG 69

Query: 63  SFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRKDIQVAAAKAAAL 118
           +F + E AARA+D AA  +KGN A LNFP  A +LPRP S + +DIQ AA+KAA +
Sbjct: 70  TFPTPEMAARAHDVAALSIKGNSAILNFPELAHSLPRPVSFAPRDIQAAASKAAHM 125

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459937|ref|XP_002265204.1| PREDICTED: dehydration-responsive element-binding protein 3-like [Vitis vinifera]

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 64/85 (75%), Positives = 74/85 (87%)

Query: 26  KRTRQNDTPFRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNL 85
           K  RQ+D+PFRGVRKR WG YVSEIRLPG+KTR+WLGSFGS E AARAYD+AAF+L+G+ 
Sbjct: 15  KPKRQSDSPFRGVRKRSWGRYVSEIRLPGKKTRVWLGSFGSPEMAARAYDAAAFFLRGDS 74

Query: 86  ATLNFPASAGALPRPESCSRKDIQV 110
           A LNFP SA +LPRPES SR+DIQV
Sbjct: 75  ACLNFPESAESLPRPESSSRRDIQV 99

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550908|ref|XP_002516502.1| Transcriptional factor TINY, putative [Ricinus communis] gi|223544322|gb|EEF45843.1| Transcriptional factor TINY, putative [Ricinus communis]

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 61/124 (49%), Positives = 78/124 (62%), Gaps = 3/124 (2%)

Query: 5   TQTQEP---SQLQPGSSTSKPGSKKRTRQNDTPFRGVRKRRWGSYVSEIRLPGEKTRIWL 61
           TQ QE     Q  P S T+K   + R       +RGVR R WG +VSEIR P +K+RIWL
Sbjct: 20  TQRQEALVEEQQDPESPTNKKIKRIRDTNKHPVYRGVRMRNWGKWVSEIREPRKKSRIWL 79

Query: 62  GSFGSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRKDIQVAAAKAAALVEV 121
           G+F + E AARA+D AA  +KGN A LNFP  A +LPRP S + +D+Q+AAAKAA +   
Sbjct: 80  GTFPTPEMAARAHDVAALSIKGNSAILNFPELADSLPRPASLAPRDVQIAAAKAAQMDTF 139

Query: 122 GDRI 125
             +I
Sbjct: 140 DKKI 143

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495879|ref|XP_003516798.1| PREDICTED: ethylene-responsive transcription factor ERF034-like [Glycine max]

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/136 (47%), Positives = 84/136 (61%), Gaps = 6/136 (4%)

Query: 11  SQLQPGSSTSKPGSKKRTRQNDTP------FRGVRKRRWGSYVSEIRLPGEKTRIWLGSF 64
           S++ P  + + P SKKR R +D        +RGVR R WG +VSEIR P +K+RIWLG++
Sbjct: 44  SKISPPQNQNTPNSKKRQRSDDNENKHHPSYRGVRMRAWGKWVSEIREPRKKSRIWLGTY 103

Query: 65  GSAEKAARAYDSAAFYLKGNLATLNFPASAGALPRPESCSRKDIQVAAAKAAALVEVGDR 124
            +AE AARA+D AA  +KG+ A LNFP  A  LPRP + S KDIQ AAAKAA      D 
Sbjct: 104 PTAEMAARAHDVAALAVKGHSAFLNFPNLAQDLPRPTTTSPKDIQAAAAKAATTTFFDDE 163

Query: 125 IESECSGSGGEPDCGD 140
           I + C     E + G+
Sbjct: 164 IVNHCQAEKAEQNHGE 179

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549882|ref|XP_002515992.1| Transcriptional factor TINY, putative [Ricinus communis] gi|223544897|gb|EEF46412.1| Transcriptional factor TINY, putative [Ricinus communis]

 Score =  109 bits (273), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 66/86 (76%)

Query: 35  FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASA 94
           +RGVR R WG +VSEIR P +K+RIWLG+F +AE AARA+D AA  +KGN A LNFP   
Sbjct: 49  YRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAAMSIKGNSAILNFPQLI 108

Query: 95  GALPRPESCSRKDIQVAAAKAAALVE 120
            +LPRP S   +DIQVAAAKAA++VE
Sbjct: 109 DSLPRPVSLMPRDIQVAAAKAASMVE 134

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517245|ref|XP_004165656.1| PREDICTED: ethylene-responsive transcription factor ERF043-like [Cucumis sativus]

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/92 (57%), Positives = 68/92 (73%)

Query: 27  RTRQNDTPFRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLA 86
           R R +D+ +RGVR R WG +VSEIR P +K+RIWLG+F + E AARA+D AA  +KGN A
Sbjct: 42  RVRPSDSIYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSA 101

Query: 87  TLNFPASAGALPRPESCSRKDIQVAAAKAAAL 118
            LNFP  A +LPRP S + +DIQ AA+KAA +
Sbjct: 102 ILNFPELAHSLPRPVSFAPRDIQAAASKAAHM 133

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
TAIR|locus:2035257	192	AT1G01250 [Arabidopsis thalian	0.566	0.552	0.504	2.1e-22
TAIR|locus:2103301	256	AT3G60490 [Arabidopsis thalian	0.427	0.312	0.612	1.1e-21
TAIR|locus:2012653	184	AT1G33760 [Arabidopsis thalian	0.545	0.554	0.475	3e-21
TAIR|locus:2145249	218	tny "TINY" [Arabidopsis thalia	0.663	0.568	0.446	8e-21
TAIR|locus:2058764	194	ERF38 "ERF family protein 38"	0.497	0.479	0.526	2.7e-20
TAIR|locus:2195985	244	AT1G77200 [Arabidopsis thalian	0.475	0.364	0.505	1.5e-19
TAIR|locus:504956445	216	AT5G21960 [Arabidopsis thalian	0.406	0.351	0.539	1.9e-19
TAIR|locus:2825329	183	AT1G71450 [Arabidopsis thalian	0.406	0.415	0.592	1.9e-19
TAIR|locus:2094897	236	AT3G16280 [Arabidopsis thalian	0.663	0.525	0.409	1.9e-19
TAIR|locus:2055007	295	AT2G44940 [Arabidopsis thalian	0.401	0.254	0.613	3.1e-19

TAIR|locus:2035257 AT1G01250 [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 55/109 (50%), Positives = 67/109 (61%)

Query:    35 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASA 94
             + GVRKRRWG +VSEIR P +K+RIWLGSF   E AA+AYD AAF LKG  A LNFP   
Sbjct:    45 YHGVRKRRWGKWVSEIREPRKKSRIWLGSFPVPEMAAKAYDVAAFCLKGRKAQLNFPEEI 104

Query:    95 GALPRPESCSRKDIQVXXXXXXXLVEVGDRIESECSGSGGEPDCGDWWE 143
               LPRP +C+ +DIQV        V++   I+       G  D  D+WE
Sbjct:   105 EDLPRPSTCTPRDIQVAAAKAANAVKI---IKMGDDDVAGIDDGDDFWE 150

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

TAIR|locus:2103301 AT3G60490 [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 49/80 (61%), Positives = 60/80 (75%)

Query:    30 QNDTPFRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLN 89
             +N T +RGVR R WG +VSEIR P +K+RIWLG++ +AE AARA+D AA  +KGN   LN
Sbjct:    66 KNPTSYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGNSGFLN 125

Query:    90 FPASAGALPRPESCSRKDIQ 109
             FP  +G LPRP SCS KDIQ
Sbjct:   126 FPELSGLLPRPVSCSPKDIQ 145

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2012653 AT1G33760 [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 49/103 (47%), Positives = 65/103 (63%)

Query:    31 NDTPFRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNF 90
             N   +RG+R+R+WG +VSEIR PG+KTRIWLGS+ +AE AA AYD+AA +L+G    LNF
Sbjct:    16 NQLSYRGIRRRKWGKWVSEIREPGKKTRIWLGSYETAEMAAAAYDAAALHLRGRGTNLNF 75

Query:    91 PASAGALPRPESCSRKDIQVXXXXXXXLVEVGDRIESECSGSG 133
             P    + PRPES S + IQ        + + G R+      SG
Sbjct:    76 PELVDSFPRPESSSSEHIQAAAQDAALMFKPG-RLSEPALESG 117

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2145249 tny "TINY" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 58/130 (44%), Positives = 72/130 (55%)

Query:    35 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASA 94
             +RGVRKR WG +VSEIR P +K+RIWLG+F S E AARA+D AA  +KG  A LNFP  A
Sbjct:    36 YRGVRKRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGASAILNFPDLA 95

Query:    95 GALPRPESCSRKDIQVXXXXXXXLVEVGDRIESECS----GSGGEPDCGDWWERETTASD 150
             G+ PRP S S +DIQV       + E      S  S     S              T S+
Sbjct:    96 GSFPRPSSLSPRDIQVAALKAAHM-ETSQSFSSSSSLTFSSSQSSSSLESLVSSSATGSE 154

Query:   151 EV-KVAPLPS 159
             E+ ++  LPS
Sbjct:   155 ELGEIVELPS 164

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009825 "multidimensional cell growth" evidence=IMP

TAIR|locus:2058764 ERF38 "ERF family protein 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 49/93 (52%), Positives = 60/93 (64%)

Query:    35 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASA 94
             FRGVR R+WG +VSEIR P +K+RIWLG+F +AE AARA+D AA  +KG  A LNFP  A
Sbjct:    45 FRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTAEMAARAHDVAALAIKGGSAHLNFPELA 104

Query:    95 GALPRPESCSRKDIQVXXXXXXXLVEVGDRIES 127
               LPRP S   KDIQ         V +   +E+
Sbjct:   105 YHLPRPASADPKDIQAAAAAAAAAVAIDMDVET 137

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IGI

GO:0009834 "secondary cell wall biogenesis" evidence=TAS

TAIR|locus:2195985 AT1G77200 [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 45/89 (50%), Positives = 59/89 (66%)

Query:    30 QNDTPFRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLN 89
             ++D  +RGVR R WG +VSEIR P +K+RIWLG+F + E AARA+D+AA  +KG  A LN
Sbjct:    38 RSDPGYRGVRMRTWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDAAALTIKGTSAVLN 97

Query:    90 FPASAGALPRPESCSRKDIQVXXXXXXXL 118
             FP  A  LPRP S S +D+Q        +
Sbjct:    98 FPELATYLPRPASSSPRDVQAAAAVAAAM 126

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:504956445 AT5G21960 [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
 Identities = 41/76 (53%), Positives = 54/76 (71%)

Query:    35 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASA 94
             + GVRKR+WG +V+EIRLP  + RIWLGSF SAEKAARA+D+A + L+G  A  NFP + 
Sbjct:     7 YTGVRKRKWGKWVAEIRLPNSRDRIWLGSFDSAEKAARAFDAALYCLRGPGARFNFPDNP 66

Query:    95 GALPRPESCSRKDIQV 110
               +P   S + + IQV
Sbjct:    67 PEIPGGRSLTPQQIQV 82

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2825329 AT1G71450 [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 45/76 (59%), Positives = 54/76 (71%)

Query:    35 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASA 94
             +RGVRKR+WG +VSEIR PG K RIWLGSF + E AA AYD AAF+ +G  A LNFP  A
Sbjct:    24 YRGVRKRKWGKWVSEIREPGTKNRIWLGSFETPEMAATAYDVAAFHFRGREARLNFPELA 83

Query:    95 GALPRPESCSRKDIQV 110
              +LPRP   S   I++
Sbjct:    84 SSLPRPADSSSDSIRM 99

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2094897 AT3G16280 [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 52/127 (40%), Positives = 71/127 (55%)

Query:    35 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASA 94
             +RGVR R WG +VSEIR P +KTRIWLG+F +A+ AARA+D AA  +KG+ A LNFP  A
Sbjct:    61 YRGVRMRSWGKWVSEIRQPRKKTRIWLGTFVTADMAARAHDVAALTIKGSSAVLNFPELA 120

Query:    95 GALPRPESCSRKDIQVXXXXXXXLVEVGDRIESECSGSGGEPDCGDWWERETTASDE--V 152
                PRP S S  DIQ        +V V +++  +       P     +    +  +E   
Sbjct:   121 SLFPRPASSSPHDIQTAAAEAAAMV-VEEKLLEKDEAPEAPPSSESSYVAAESEDEERLE 179

Query:   153 KVAPLPS 159
             K+  LP+
Sbjct:   180 KIVELPN 186

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2055007 AT2G44940 [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 46/75 (61%), Positives = 56/75 (74%)

Query:    35 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASA 94
             +RGVR R WG +VSEIR P +K+RIWLG++ +AE AARA+D AA  +KG  A LNFP  A
Sbjct:   100 YRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGTTAYLNFPKLA 159

Query:    95 GALPRPESCSRKDIQ 109
             G LPRP + S KDIQ
Sbjct:   160 GELPRPVTNSPKDIQ 174

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.125.100.1 SubName- Full=TINY-like protein; (82 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	187
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	1e-27
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	2e-25
pfam00847	53	pfam00847, AP2, AP2 domain	2e-11

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score = 98.5 bits (246), Expect = 1e-27
 Identities = 35/59 (59%), Positives = 45/59 (76%)

Query: 35 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPAS 93
          +RGVR+R WG +V+EIR P +  R+WLG+F +AE+AARAYD AAF  +G  A LNFP S
Sbjct: 2  YRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNS 60

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score = 92.7 bits (231), Expect = 2e-25
 Identities = 36/59 (61%), Positives = 45/59 (76%)

Query: 35 FRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPAS 93
          +RGVR+R WG +V+EIR P    RIWLG+F +AE+AARAYD AA  L+G+ A LNFP S
Sbjct: 3  YRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 56.1 bits (136), Expect = 2e-11
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 4/54 (7%)

Query: 33 TPFRGVRKR-RWGSYVSEIRLPGE--KTRIWLGSFGSAEKAARAYDSAAFYLKG 83
          + ++GVR   RWG +V+EIR PGE  K R  LG+FG+ E+AARA  +A   L+G
Sbjct: 1  SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	187
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.86
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.84
PHA00280	121	putative NHN endonuclease	99.68
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.22

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.86  E-value=6.6e-22  Score=136.13  Aligned_cols=61  Identities=59%  Similarity=1.053  Sum_probs=58.0

Q ss_pred             CCeeeeeeCCCCcEEEEEeeCCCCeEEeecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 029817           33 TPFRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPAS   93 (187)
Q Consensus        33 s~yRGVr~r~~GkWvAeIr~p~~~kri~LGtf~T~EeAA~AYD~Aa~~l~G~~A~lNFp~s   93 (187)
                      |+|+||+++++|||+|+|+++..++++|||+|+|+|||+.|||.+++.++|.++.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899999988999999999876699999999999999999999999999999999999985

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.84  E-value=1.1e-20  Score=131.62  Aligned_cols=62  Identities=56%  Similarity=1.020  Sum_probs=58.9

Q ss_pred             CeeeeeeCCCCcEEEEEeeCCCCeEEeecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q 029817           34 PFRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASAG   95 (187)
Q Consensus        34 ~yRGVr~r~~GkWvAeIr~p~~~kri~LGtf~T~EeAA~AYD~Aa~~l~G~~A~lNFp~s~~   95 (187)
                      +|+||+++++|||+|+|++|.+++++|||+|+|+||||.|||.+++.++|..+.+|||.+.+
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y   62 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLY   62 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccC
Confidence            59999988899999999998899999999999999999999999999999999999998754

>PHA00280 putative NHN endonuclease

Probab=99.68  E-value=3e-17  Score=128.61  Aligned_cols=76  Identities=16%  Similarity=0.154  Sum_probs=70.1

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCeeeeeeCC-CCcEEEEEeeCCCCeEEeecCCCCHHHHHHHHHHHHHHhcCCCCC
Q 029817            9 EPSQLQPGSSTSKPGSKKRTRQNDTPFRGVRKRR-WGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDSAAFYLKGNLAT   87 (187)
Q Consensus         9 ~~~~l~~~s~~~~~~n~k~~~~~~s~yRGVr~r~-~GkWvAeIr~p~~~kri~LGtf~T~EeAA~AYD~Aa~~l~G~~A~   87 (187)
                      .+.||+.++..++..|++.++.|+|+|+||++++ .|||+|+|++  ++|+++||.|+|+|+|+.||+ ++..|||++|+
T Consensus        43 ri~NLr~~T~~eN~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~--~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         43 ALDNLRLALPKENSWNMKTPKSNTSGLKGLSWSKEREMWRGTVTA--EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             cHHHhhhcCHHHHhcccCCCCCCCCCCCeeEEecCCCeEEEEEEE--CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            5679999999999999999999999999999875 6999999995  999999999999999999997 67789999875

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.22  E-value=2.8e-11  Score=81.21  Aligned_cols=52  Identities=33%  Similarity=0.493  Sum_probs=45.7

Q ss_pred             CCeeeeeeCC-CCcEEEEEeeCCC---CeEEeecCCCCHHHHHHHHHHHHHHhcCC
Q 029817           33 TPFRGVRKRR-WGSYVSEIRLPGE---KTRIWLGSFGSAEKAARAYDSAAFYLKGN   84 (187)
Q Consensus        33 s~yRGVr~r~-~GkWvAeIr~p~~---~kri~LGtf~T~EeAA~AYD~Aa~~l~G~   84 (187)
                      |+|+||++++ .++|+|+|+++..   +++++||.|+++++|+++|+.++..++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            6899999876 7999999998522   49999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	187
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		6e-12
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		6e-12

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 32/58 (55%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
Query: 35 FRGVRKRRWGSYVSEIRLPGEK-TRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 91
          +RGVR+R WG + +EIR P +   R+WLG+F +AE AA AYD AAF ++G+ A LNFP
Sbjct: 6  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 63

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 32/58 (55%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
Query: 35 FRGVRKRRWGSYVSEIRLPGEK-TRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 91
          +RGVR+R WG + +EIR P +   R+WLG+F +AE AA AYD AAF ++G+ A LNFP
Sbjct: 3  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	187
1gcc_A	63	Ethylene responsive element binding factor 1; tran	1e-24

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score = 90.1 bits (224), Expect = 1e-24
 Identities = 32/58 (55%), Positives = 43/58 (74%), Gaps = 1/58 (1%)

Query: 35 FRGVRKRRWGSYVSEIRLPGEK-TRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 91
          +RGVR+R WG + +EIR P +   R+WLG+F +AE AA AYD AAF ++G+ A LNFP
Sbjct: 3  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	187
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.93
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	92.69
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	87.25
3jtz_A	88	Integrase; four stranded beta-sheet, DNA binding p	83.18

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.93  E-value=1.4e-26  Score=161.19  Aligned_cols=61  Identities=52%  Similarity=0.992  Sum_probs=57.7

Q ss_pred             CeeeeeeCCCCcEEEEEeeCCC-CeEEeecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 029817           34 PFRGVRKRRWGSYVSEIRLPGE-KTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPASA   94 (187)
Q Consensus        34 ~yRGVr~r~~GkWvAeIr~p~~-~kri~LGtf~T~EeAA~AYD~Aa~~l~G~~A~lNFp~s~   94 (187)
                      +||||++|++|||+|+|++|.+ ++++|||||+|+||||+|||.|+++++|..++||||++.
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~   63 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence            6999999999999999999875 699999999999999999999999999999999999873

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=92.69  E-value=0.00032  Score=55.78  Aligned_cols=64  Identities=6%  Similarity=-0.080  Sum_probs=42.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCeeeeeeCCCCcEEEEEeeCCCCeEEeecCCCCHHHHHHHHHH
Q 029817            9 EPSQLQPGSSTSKPGSKKRTRQNDTPFRGVRKRRWGSYVSEIRLPGEKTRIWLGSFGSAEKAARAYDS   76 (187)
Q Consensus         9 ~~~~l~~~s~~~~~~n~k~~~~~~s~yRGVr~r~~GkWvAeIr~p~~~kri~LGtf~T~EeAA~AYD~   76 (187)
                      .+.||+-.|..++..++....++ ..++||.....++|.+.|..  . +.++||.|+|.+|||++|..
T Consensus        84 ~~~NL~~~t~~eN~~~~~~~~~~-~~~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~Gv  147 (174)
T 1u3e_M           84 LSTNLRWVTQKINVENQMSRGTL-NVSKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELGL  147 (174)
T ss_dssp             CGGGEEEECHHHHHHHHHHHTCC-CCHHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHTC
T ss_pred             CHHHcEECCHHHHhhcccccCcc-cceeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHCc
Confidence            34567777777666554443322 22577755224678888885  3 56779999999999999653

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=87.25  E-value=0.42  Score=34.05  Aligned_cols=24  Identities=8%  Similarity=0.109  Sum_probs=20.1

Q ss_pred             CCCCCeeeeeeCC-CCcEEEEEeeC
Q 029817           30 QNDTPFRGVRKRR-WGSYVSEIRLP   53 (187)
Q Consensus        30 ~~~s~yRGVr~r~-~GkWvAeIr~p   53 (187)
                      +..|+|.||++.+ .+.|+|.-.+.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e~   27 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYDG   27 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEET
T ss_pred             CCCCCCCcEEeecCCceEEEEEecC
Confidence            5689999999886 58999999974

>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A

Probab=83.18  E-value=3  Score=29.59  Aligned_cols=44  Identities=23%  Similarity=0.360  Sum_probs=31.5

Q ss_pred             eeeCCCC--cEEEEEeeCCCCeEEeecCCC--CHHHHHHHHHHHHHHh
Q 029817           38 VRKRRWG--SYVSEIRLPGEKTRIWLGSFG--SAEKAARAYDSAAFYL   81 (187)
Q Consensus        38 Vr~r~~G--kWvAeIr~p~~~kri~LGtf~--T~EeAA~AYD~Aa~~l   81 (187)
                      |+..+.|  .|+-+.+..++.+++-||.|+  |.++|....+.+...+
T Consensus        28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l   75 (88)
T 3jtz_A           28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML   75 (88)
T ss_dssp             EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence            3444444  599998876666889999998  6788877766666554

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	187
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	3e-24

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 88.2 bits (219), Expect = 3e-24
 Identities = 32/58 (55%), Positives = 43/58 (74%), Gaps = 1/58 (1%)

Query: 35 FRGVRKRRWGSYVSEIRLPGEK-TRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFP 91
          +RGVR+R WG + +EIR P +   R+WLG+F +AE AA AYD AAF ++G+ A LNFP
Sbjct: 3  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	187
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.93

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=2.1e-26  Score=159.08  Aligned_cols=60  Identities=53%  Similarity=1.006  Sum_probs=56.0

Q ss_pred             CeeeeeeCCCCcEEEEEeeCC-CCeEEeecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 029817           34 PFRGVRKRRWGSYVSEIRLPG-EKTRIWLGSFGSAEKAARAYDSAAFYLKGNLATLNFPAS   93 (187)
Q Consensus        34 ~yRGVr~r~~GkWvAeIr~p~-~~kri~LGtf~T~EeAA~AYD~Aa~~l~G~~A~lNFp~s   93 (187)
                      +||||++|++|||+|+|++|. +++++|||||+|+||||+|||+|++.++|.++.+|||..
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            599999998999999999975 458999999999999999999999999999999999965