Citrus Sinensis ID: 029839

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------
Protein Sequence
MSSSSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLDGRCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLPVF
Secondary Structure (PSIPRED)
ccccccEEEEEcccccccccccccccEEEccccccccccEEEEcccccccHHHHHHccccEEEEEEEEccccccccccccccccccccEEcccccccccccEEEEccccEEEEEEcccccccccccccccccccEEEEEccHHHHcccccccEEEEEEEccHHHHHHcHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEccccccccccccccccccccccccccHHEEHHHccccccHHHHHHccccEEEEEEcccccccccccccEEcccccccEEccHcHEcEccHHEEEccccEEEEccccccccccccccccHHcccEEEEEccHHHHcccccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MSSSSVILYetrqgksvkppppvtskyivkdtgncspryircslnqipctenllklssmpsALMVQVLalpdpsedpipvvdfgesglvrccccrgyrnpfmefvdngksfvcnfcgldgrcldaderpelcrGTVEFAASREFmmrnvmppVYFFLIDVSTDAVQTGATAAACSAIMQVISDLPVF
Flexible Loop (DISEMBL)
MSSSSVILYetrqgksvkppppvtskyiVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLDGRCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLPVF
Low Complexity Region (SEG)
MSSSSVILYETRQGKSVKppppVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLDGRCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLPVF
Disordered region (IsUnstruct)
*************************KYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLDGRCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAACSAIMQVIS*****
Disordered Region (DISOPRED)
****SVI****RQ****KPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLDGRCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLPVF
Disordered Region (DISEMBL)
MSSSSVILY***********PPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLDGRCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLPVF
Disordered Region (DISPRO)
***SSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLDGRCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLPVF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhoooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSSSSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLDGRCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLPVF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	187	2.2.26 [Sep-21-2011]
Q9M081	1080	Protein transport protein	yes	no	0.983	0.170	0.636	1e-69
Q9M291	1096	Protein transport protein	no	no	0.983	0.167	0.626	3e-67
P53992	1094	Protein transport protein	yes	no	0.887	0.151	0.406	4e-31
Q9SFU0	1038	Protein transport protein	no	no	0.818	0.147	0.375	4e-29
Q1E6U9	932	Protein transport protein	N/A	no	0.812	0.163	0.401	2e-28
Q7S4P3	950	Protein transport protein	N/A	no	0.802	0.157	0.393	5e-28
A1DP06	919	Protein transport protein	N/A	no	0.855	0.174	0.383	6e-27
Q4WLP1	919	Protein transport protein	no	no	0.855	0.174	0.383	6e-27
O94855	1032	Protein transport protein	no	no	0.887	0.160	0.346	6e-27
Q0CSL7	904	Protein transport protein	N/A	no	0.855	0.176	0.383	7e-27

>sp|Q9M081|SC24B_ARATH Protein transport protein Sec24-like At4g32640 OS=Arabidopsis thaliana GN=At4g32640 PE=1 SV=3

 Score =  262 bits (669), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 126/198 (63%), Positives = 149/198 (75%), Gaps = 14/198 (7%)

Query: 2   SSSSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPS 61
           SSSS  ++ETRQ     PPPP TS Y+V+DTGNCSPRY+RC++NQIPCT +LL  S M  
Sbjct: 341 SSSSPTVFETRQSNQANPPPPATSDYVVRDTGNCSPRYMRCTINQIPCTVDLLSTSGMQL 400

Query: 62  ALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL--- 118
           ALMVQ LAL  PSE+PI VVDFGE G VRC  C+GY NPFM+F+D G+ F+CNFCG    
Sbjct: 401 ALMVQPLALSHPSEEPIQVVDFGEGGPVRCSRCKGYINPFMKFIDQGRKFICNFCGYTDE 460

Query: 119 -----------DGRCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQT 167
                      DGR  D DERPELCRGTVEF A++E+M+R+ MP VYFFLIDVS +A+QT
Sbjct: 461 TPRDYHCNLGPDGRRRDVDERPELCRGTVEFVATKEYMVRDPMPAVYFFLIDVSMNAIQT 520

Query: 168 GATAAACSAIMQVISDLP 185
           GATAAAC+AI QV+SDLP
Sbjct: 521 GATAAACNAIQQVLSDLP 538

Component of the COPII coat, that covers ER-derived vesicles involved in transport from the endoplasmic reticulum to the Golgi apparatus. COPII is composed of at least five proteins: the SEC23/24 complex, the SEC13/31 complex, and the protein SAR1. Acts in the cytoplasm to promote the transport of secretory, plasma membrane, and vacuolar proteins from the endoplasmic reticulum to the Golgi complex.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9M291|SC24C_ARATH Protein transport protein Sec24-like CEF OS=Arabidopsis thaliana GN=CEF PE=1 SV=3

 Score =  254 bits (648), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 124/198 (62%), Positives = 147/198 (74%), Gaps = 14/198 (7%)

Query: 2   SSSSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPS 61
           SSSS I+YETR      PPPP T  YI +DTGN SPRY+RC++NQIPCT +LL  S M  
Sbjct: 344 SSSSPIVYETRVENKANPPPPTTVDYITRDTGNSSPRYMRCTINQIPCTVDLLSTSGMQL 403

Query: 62  ALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL--- 118
           AL+VQ +AL  PSE+PI VVDFGESG VRC  C+GY NPFM+F+D G+ F+CN CG    
Sbjct: 404 ALIVQPMALSHPSEEPIQVVDFGESGPVRCSRCKGYVNPFMKFIDQGRKFICNLCGYTDE 463

Query: 119 -----------DGRCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQT 167
                      DGR  DADERPELCRGTV+F A++E+M+R+ MP VYFFLIDVS +A+QT
Sbjct: 464 TPRDYQCNLGPDGRRRDADERPELCRGTVDFVATKEYMVRDPMPAVYFFLIDVSMNAIQT 523

Query: 168 GATAAACSAIMQVISDLP 185
           GATAAACSAI QV+SDLP
Sbjct: 524 GATAAACSAIQQVLSDLP 541

Component of the COPII coat, that covers ER-derived vesicles involved in transport from the endoplasmic reticulum to the Golgi apparatus. COPII is composed of at least five proteins: the SEC23/24 complex, the SEC13/31 complex, and the protein SAR1. Acts in the cytoplasm to promote the transport of secretory, plasma membrane, and vacuolar proteins from the endoplasmic reticulum to the Golgi complex.

Arabidopsis thaliana (taxid: 3702)

>sp|P53992|SC24C_HUMAN Protein transport protein Sec24C OS=Homo sapiens GN=SEC24C PE=1 SV=3

 Score =  134 bits (336), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 74/182 (40%), Positives = 106/182 (58%), Gaps = 16/182 (8%)

Query: 20  PPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIP 79
           PP VT+ ++VKD GN SPRYIRC+   IPCT ++ K + +P A +++ LA   P E    
Sbjct: 354 PPLVTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPY 413

Query: 80  VVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG------------LD--GRCLDA 125
           VVD GESG +RC  C+ Y  PFM+F++ G+ F C FC             LD  G+ +DA
Sbjct: 414 VVDHGESGPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVDA 473

Query: 126 DERPELCRGTVEFAASREFMMRNVM--PPVYFFLIDVSTDAVQTGATAAACSAIMQVISD 183
            +RPEL  G+ EF A+ ++   N    PP + F+IDVS +A++TG     C  +  ++  
Sbjct: 474 YDRPELSLGSYEFLATVDYCKNNKFPSPPAFIFMIDVSYNAIRTGLVRLLCEELKSLLDF 533

Query: 184 LP 185
           LP
Sbjct: 534 LP 535

Component of the COPII coat, that covers ER-derived vesicles involved in transport from the endoplasmic reticulum to the Golgi apparatus. COPII acts in the cytoplasm to promote the transport of secretory, plasma membrane, and vacuolar proteins from the endoplasmic reticulum to the Golgi complex.

Homo sapiens (taxid: 9606)

>sp|Q9SFU0|SC24A_ARATH Protein transport protein Sec24-like At3g07100 OS=Arabidopsis thaliana GN=At3g07100 PE=1 SV=2

 Score =  127 bits (319), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 95/168 (56%), Gaps = 15/168 (8%)

Query: 34  NCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCC 93
           NC  RY+R + + IP +++L     +P   +V  LA   P  + +P++DFG +G++RC  
Sbjct: 315 NCHSRYLRLTTSAIPNSQSLASRWHLPLGAVVCPLA-ETPEGEEVPLIDFGSTGIIRCRR 373

Query: 94  CRGYRNPFMEFVDNGKSFVCNFCGL--------------DGRCLDADERPELCRGTVEFA 139
           CR Y NPF+ F D+G+ + CN C +               GR +D D+RPEL +G+VE  
Sbjct: 374 CRTYVNPFVTFTDSGRKWRCNICSMLNDVPGEYFSHLDATGRRMDMDQRPELTKGSVEII 433

Query: 140 ASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLPVF 187
           A  E+M+R  MPP+YFFLIDVS  A ++G        I   + +LP +
Sbjct: 434 APTEYMVRPPMPPIYFFLIDVSISATKSGMLEVVAQTIKSCLDNLPGY 481

Component of the COPII coat, that covers ER-derived vesicles involved in transport from the endoplasmic reticulum to the Golgi apparatus. COPII is composed of at least five proteins: the SEC23/24 complex, the SEC13/31 complex, and the protein SAR1. Acts in the cytoplasm to promote the transport of secretory, plasma membrane, and vacuolar proteins from the endoplasmic reticulum to the Golgi complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q1E6U9|SEC24_COCIM Protein transport protein SEC24 OS=Coccidioides immitis (strain RS) GN=SEC24 PE=3 SV=2

 Score =  124 bits (312), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/167 (40%), Positives = 93/167 (55%), Gaps = 15/167 (8%)

Query: 32  TGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRC 91
           T NCS +++R +LN +P T +LLK S +P AL++Q       SEDP+P+V   +  + RC
Sbjct: 198 TANCSAKFVRSTLNAVPTTNSLLKKSRLPFALVIQPFTSLHDSEDPVPIVS--DQIISRC 255

Query: 92  CCCRGYRNPFMEFVDNGKSFVCNFCGLDG-------------RCLDADERPELCRGTVEF 138
             CR Y NPF+ F+D+G  + CN C L               + LD  +RPEL    VEF
Sbjct: 256 RRCRSYINPFVTFLDHGHRWRCNMCNLTNDVPQGFDWDATAQQALDRWQRPELNHAVVEF 315

Query: 139 AASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLP 185
            A +E+M+R   P VY FLIDVS  +V TG  A A   I + +  +P
Sbjct: 316 VAPQEYMVRPPQPLVYLFLIDVSYSSVTTGLLATAARCIKESLDRIP 362

Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules.

Coccidioides immitis (strain RS) (taxid: 246410)

>sp|Q7S4P3|SEC24_NEUCR Protein transport protein sec-24 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=sec-24 PE=3 SV=1

 Score =  124 bits (310), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 65/165 (39%), Positives = 92/165 (55%), Gaps = 15/165 (9%)

Query: 34  NCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCC 93
           NC+P+Y+R +LN +P T +LLK S +P AL++Q  A     +DP+PVV   +  + RC  
Sbjct: 219 NCAPKYVRSTLNAVPTTHSLLKKSKLPFALVIQPYAALHDLDDPVPVVQ--DQVISRCRR 276

Query: 94  CRGYRNPFMEFVDNGKSFVCNFCGLDG-------------RCLDADERPELCRGTVEFAA 140
           CR Y NPF+ F+D+G  + CN C L               + +D  +RPEL    VEF A
Sbjct: 277 CRSYINPFVTFLDHGHRWRCNMCNLTNDVPQAFDWDAAAQKSVDRWQRPELNHAVVEFVA 336

Query: 141 SREFMMRNVMPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLP 185
            +E+M+R   P VY FL DVS  AV TG  A +   I+  +  +P
Sbjct: 337 PQEYMVRPPQPLVYLFLFDVSYAAVSTGLLATSARTILDSLDRIP 381

Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|A1DP06|SEC24_NEOFI Protein transport protein SEC24 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sec24 PE=3 SV=1

 Score =  120 bits (301), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 71/185 (38%), Positives = 97/185 (52%), Gaps = 25/185 (13%)

Query: 14  GKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDP 73
           G SV P P          T NC P+Y+R +LN +P T +LLK S +P AL++Q  A    
Sbjct: 179 GTSVYPSP----------TANCPPKYVRSTLNAVPTTHSLLKKSKLPFALVIQPYASLRD 228

Query: 74  SEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLDG---RCLDADE--- 127
           +EDPIPV+   +  + RC  CR Y NPF+ F+D+G  + CN C L     +  D D    
Sbjct: 229 AEDPIPVIP--DQVISRCRRCRSYINPFVTFLDHGHRWRCNMCNLTNDVPQAFDWDAALQ 286

Query: 128 -------RPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAACSAIMQV 180
                  RP+L    VEF A +E+M+R   P VY FLIDVS  +V  G  A +   I + 
Sbjct: 287 KPADRSLRPDLNHAVVEFVAPQEYMVRPPQPLVYLFLIDVSYASVTNGLLATSARCIKES 346

Query: 181 ISDLP 185
           +  +P
Sbjct: 347 LDRIP 351

Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules.

Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) (taxid: 331117)

>sp|Q4WLP1|SEC24_ASPFU Protein transport protein sec24 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=sec24 PE=3 SV=2

 Score =  120 bits (300), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 71/185 (38%), Positives = 97/185 (52%), Gaps = 25/185 (13%)

Query: 14  GKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDP 73
           G SV P P          T NC P+Y+R +LN +P T +LLK S +P AL++Q  A    
Sbjct: 179 GTSVYPSP----------TANCPPKYVRSTLNAVPTTHSLLKKSKLPFALVIQPYASLRD 228

Query: 74  SEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLDG---RCLDADE--- 127
           +EDPIPV+   +  + RC  CR Y NPF+ F+D+G  + CN C L     +  D D    
Sbjct: 229 AEDPIPVIP--DQVISRCRRCRSYINPFVTFLDHGHRWRCNMCNLTNDVPQAFDWDAALQ 286

Query: 128 -------RPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAACSAIMQV 180
                  RP+L    VEF A +E+M+R   P VY FLIDVS  +V  G  A +   I + 
Sbjct: 287 KPADRSLRPDLNHAVVEFVAPQEYMVRPPQPLVYLFLIDVSYASVTNGLLATSARCIKES 346

Query: 181 ISDLP 185
           +  +P
Sbjct: 347 LDRIP 351

Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|O94855|SC24D_HUMAN Protein transport protein Sec24D OS=Homo sapiens GN=SEC24D PE=1 SV=2

 Score =  120 bits (300), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 63/182 (34%), Positives = 102/182 (56%), Gaps = 16/182 (8%)

Query: 20  PPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIP 79
           PP VT+  +++D GN SPR+IRC+    PCT ++ K + +P A +++  A    +E P+ 
Sbjct: 292 PPLVTTDCMIQDQGNASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSNESPLY 351

Query: 80  VVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG------------LD--GRCLDA 125
           +V+ GESG VRC  C+ Y  PFM+F++ G+ + C FC             LD  GR LD 
Sbjct: 352 LVNHGESGPVRCNRCKAYMCPFMQFIEGGRRYQCGFCNCVNDVPPFYFQHLDHIGRRLDH 411

Query: 126 DERPELCRGTVEFAASREFMMRNV--MPPVYFFLIDVSTDAVQTGATAAACSAIMQVISD 183
            E+PEL  G+ E+ A+ ++  ++    PP + F+IDVS   ++ G     C  +  ++  
Sbjct: 412 YEKPELSLGSYEYVATLDYCRKSKPPNPPAFIFMIDVSYSNIKNGLVKLICEELKTMLEK 471

Query: 184 LP 185
           +P
Sbjct: 472 IP 473

Component of the COPII coat, that covers ER-derived vesicles involved in transport from the endoplasmic reticulum to the Golgi apparatus. COPII acts in the cytoplasm to promote the transport of secretory, plasma membrane, and vacuolar proteins from the endoplasmic reticulum to the Golgi complex.

Homo sapiens (taxid: 9606)

>sp|Q0CSL7|SEC24_ASPTN Protein transport protein sec24 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=sec24 PE=3 SV=1

 Score =  120 bits (300), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 71/185 (38%), Positives = 96/185 (51%), Gaps = 25/185 (13%)

Query: 14  GKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDP 73
           G SV P P            NC P+Y+R +LN +P T +LLK S +P AL++Q  A    
Sbjct: 164 GTSVYPSP----------YANCPPKYVRSTLNAVPTTHSLLKKSKLPFALVIQPYAALHD 213

Query: 74  SEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLDG---RCLDADE--- 127
           SEDPIPV+   +  + RC  CR Y NPF+ F+D+G  + CN C L     +  D D    
Sbjct: 214 SEDPIPVIP--DQVISRCRRCRSYINPFVTFLDHGHRWRCNMCNLTNDVPQAFDWDTALQ 271

Query: 128 -------RPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAACSAIMQV 180
                  RP+L    VEF A +E+M+R   P VY FLIDVS  +V  G  A +   I + 
Sbjct: 272 KPADRSLRPDLNHSVVEFVAPQEYMVRPPQPLVYLFLIDVSYASVTNGLLATSARCIKES 331

Query: 181 ISDLP 185
           +  +P
Sbjct: 332 LDRIP 336

Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules.

Aspergillus terreus (strain NIH 2624 / FGSC A1156) (taxid: 341663)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
224123334	1103	predicted protein [Populus trichocarpa]	0.978	0.165	0.659	8e-71
359493759	1124	PREDICTED: protein transport protein Sec	0.989	0.164	0.648	2e-70
255542372	1094	Protein transport protein Sec24C, putati	0.989	0.169	0.643	2e-69
334187094	1080	sec24-like transport protein [Arabidopsi	0.983	0.170	0.636	6e-68
7270168	1069	putative protein [Arabidopsis thaliana]	0.983	0.172	0.636	6e-68
443609449	1092	Sec24-like transport protein [Arabidopsi	0.983	0.168	0.636	7e-68
7486407	1008	hypothetical protein F4D11.160 - Arabido	0.983	0.182	0.636	7e-68
224131342	1080	predicted protein [Populus trichocarpa]	0.973	0.168	0.642	3e-67
297802748	1067	hypothetical protein ARALYDRAFT_491448 [	0.983	0.172	0.631	3e-67
255545386	1056	Protein transport protein Sec24C, putati	0.978	0.173	0.629	8e-67

>gi|224123334|ref|XP_002319053.1| predicted protein [Populus trichocarpa] gi|222857429|gb|EEE94976.1| predicted protein [Populus trichocarpa]

 Score =  271 bits (693), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 130/197 (65%), Positives = 151/197 (76%), Gaps = 14/197 (7%)

Query: 4   SSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSAL 63
           SSVIL++TR G    PPPP TS YIV DTGNCSPRY+RC++NQIPCT +LL  S MP AL
Sbjct: 328 SSVILHDTRAGNQANPPPPATSDYIVSDTGNCSPRYMRCTINQIPCTVDLLSTSGMPLAL 387

Query: 64  MVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL----- 118
           +VQ LALP PSEDP+ VVDFGESG VRC  C+GY NPFM+F+D G+ F+CN CG      
Sbjct: 388 LVQPLALPHPSEDPVQVVDFGESGPVRCSRCKGYINPFMKFIDQGRQFICNLCGFTDETP 447

Query: 119 ---------DGRCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGA 169
                    DGR  DADERPELCRGTVEF A++E+M+R+ MP VYFFLIDVS  A+QTGA
Sbjct: 448 RDYHCNLGPDGRRRDADERPELCRGTVEFVATKEYMVRDPMPAVYFFLIDVSMHAIQTGA 507

Query: 170 TAAACSAIMQVISDLPV 186
           TAAACS+I QVI+DLPV
Sbjct: 508 TAAACSSINQVIADLPV 524

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493759|ref|XP_002279640.2| PREDICTED: protein transport protein Sec24-like At4g32640-like [Vitis vinifera] gi|302143220|emb|CBI20515.3| unnamed protein product [Vitis vinifera]

 Score =  270 bits (690), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 129/199 (64%), Positives = 153/199 (76%), Gaps = 14/199 (7%)

Query: 1   MSSSSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMP 60
           + ++SVIL+ETRQG    PPPP TS YIV+DTGNCSPRY+RC++NQIPCT +LL  S M 
Sbjct: 372 IPNTSVILHETRQGNQANPPPPATSDYIVRDTGNCSPRYMRCTINQIPCTADLLTTSGMQ 431

Query: 61  SALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL-- 118
            AL+VQ LALP PSE+PI VVDFGESG VRC  C+GY NPFM+F+D G+ F+CN CG   
Sbjct: 432 LALLVQPLALPHPSEEPIQVVDFGESGPVRCSRCKGYINPFMKFIDQGRRFICNLCGFTD 491

Query: 119 ------------DGRCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQ 166
                       DGR  DA+ERPELCRGTVEF AS+E+M+R  MP V+FFLIDVS +A+Q
Sbjct: 492 ETPRDYHCNLGPDGRRRDAEERPELCRGTVEFVASKEYMVREPMPAVFFFLIDVSMNAIQ 551

Query: 167 TGATAAACSAIMQVISDLP 185
           TGATAAACSAI QVI+DLP
Sbjct: 552 TGATAAACSAITQVITDLP 570

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542372|ref|XP_002512249.1| Protein transport protein Sec24C, putative [Ricinus communis] gi|223548210|gb|EEF49701.1| Protein transport protein Sec24C, putative [Ricinus communis]

 Score =  266 bits (681), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 128/199 (64%), Positives = 152/199 (76%), Gaps = 14/199 (7%)

Query: 1   MSSSSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMP 60
           + SSSV L++TRQG    PPPP TS YIV+DTGNCSPRY+RC++NQIPCT +L+  S M 
Sbjct: 340 IPSSSVTLHDTRQGNQANPPPPATSDYIVRDTGNCSPRYMRCTINQIPCTVDLVNTSGMQ 399

Query: 61  SALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL-- 118
            AL+VQ  ALP PSE+PI VVDFGESG VRC  C+GY NPFM+F+D GK F+CN CG   
Sbjct: 400 LALLVQPFALPHPSEEPIQVVDFGESGPVRCSRCKGYINPFMKFIDQGKRFICNLCGFTD 459

Query: 119 ------------DGRCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQ 166
                       DGR  DADERPELCRGTVEF A++E+M+R+ MP VYFFLIDVS +A+Q
Sbjct: 460 ETPRDYQCNLGPDGRRRDADERPELCRGTVEFVATKEYMVRDPMPVVYFFLIDVSMNAIQ 519

Query: 167 TGATAAACSAIMQVISDLP 185
           TGATAAACS+I QVI+DLP
Sbjct: 520 TGATAAACSSINQVIADLP 538

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334187094|ref|NP_194990.5| sec24-like transport protein [Arabidopsis thaliana] gi|334187096|ref|NP_001119101.5| sec24-like transport protein [Arabidopsis thaliana] gi|347595780|sp|Q9M081.3|SC24B_ARATH RecName: Full=Protein transport protein Sec24-like At4g32640 gi|332660694|gb|AEE86094.1| sec24-like transport protein [Arabidopsis thaliana] gi|332660695|gb|AEE86095.1| sec24-like transport protein [Arabidopsis thaliana]

 Score =  262 bits (669), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 126/198 (63%), Positives = 149/198 (75%), Gaps = 14/198 (7%)

Query: 2   SSSSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPS 61
           SSSS  ++ETRQ     PPPP TS Y+V+DTGNCSPRY+RC++NQIPCT +LL  S M  
Sbjct: 341 SSSSPTVFETRQSNQANPPPPATSDYVVRDTGNCSPRYMRCTINQIPCTVDLLSTSGMQL 400

Query: 62  ALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL--- 118
           ALMVQ LAL  PSE+PI VVDFGE G VRC  C+GY NPFM+F+D G+ F+CNFCG    
Sbjct: 401 ALMVQPLALSHPSEEPIQVVDFGEGGPVRCSRCKGYINPFMKFIDQGRKFICNFCGYTDE 460

Query: 119 -----------DGRCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQT 167
                      DGR  D DERPELCRGTVEF A++E+M+R+ MP VYFFLIDVS +A+QT
Sbjct: 461 TPRDYHCNLGPDGRRRDVDERPELCRGTVEFVATKEYMVRDPMPAVYFFLIDVSMNAIQT 520

Query: 168 GATAAACSAIMQVISDLP 185
           GATAAAC+AI QV+SDLP
Sbjct: 521 GATAAACNAIQQVLSDLP 538

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7270168|emb|CAB79981.1| putative protein [Arabidopsis thaliana]

 Score =  261 bits (668), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 126/198 (63%), Positives = 149/198 (75%), Gaps = 14/198 (7%)

Query: 2   SSSSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPS 61
           SSSS  ++ETRQ     PPPP TS Y+V+DTGNCSPRY+RC++NQIPCT +LL  S M  
Sbjct: 341 SSSSPTVFETRQSNQANPPPPATSDYVVRDTGNCSPRYMRCTINQIPCTVDLLSTSGMQL 400

Query: 62  ALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL--- 118
           ALMVQ LAL  PSE+PI VVDFGE G VRC  C+GY NPFM+F+D G+ F+CNFCG    
Sbjct: 401 ALMVQPLALSHPSEEPIQVVDFGEGGPVRCSRCKGYINPFMKFIDQGRKFICNFCGYTDE 460

Query: 119 -----------DGRCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQT 167
                      DGR  D DERPELCRGTVEF A++E+M+R+ MP VYFFLIDVS +A+QT
Sbjct: 461 TPRDYHCNLGPDGRRRDVDERPELCRGTVEFVATKEYMVRDPMPAVYFFLIDVSMNAIQT 520

Query: 168 GATAAACSAIMQVISDLP 185
           GATAAAC+AI QV+SDLP
Sbjct: 521 GATAAACNAIQQVLSDLP 538

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|443609449|dbj|BAM76809.1| Sec24-like transport protein [Arabidopsis thaliana]

 Score =  261 bits (668), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 126/198 (63%), Positives = 149/198 (75%), Gaps = 14/198 (7%)

Query: 2   SSSSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPS 61
           SSSS  ++ETRQ     PPPP TS Y+V+DTGNCSPRY+RC++NQIPCT +LL  S M  
Sbjct: 341 SSSSPTVFETRQSNQANPPPPATSDYVVRDTGNCSPRYMRCTINQIPCTVDLLSTSGMQL 400

Query: 62  ALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL--- 118
           ALMVQ LAL  PSE+PI VVDFGE G VRC  C+GY NPFM+F+D G+ F+CNFCG    
Sbjct: 401 ALMVQPLALSHPSEEPIQVVDFGEGGPVRCSRCKGYINPFMKFIDQGRKFICNFCGYTDE 460

Query: 119 -----------DGRCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQT 167
                      DGR  D DERPELCRGTVEF A++E+M+R+ MP VYFFLIDVS +A+QT
Sbjct: 461 TPRDYHCNLGPDGRRRDVDERPELCRGTVEFVATKEYMVRDPMPAVYFFLIDVSMNAIQT 520

Query: 168 GATAAACSAIMQVISDLP 185
           GATAAAC+AI QV+SDLP
Sbjct: 521 GATAAACNAIQQVLSDLP 538

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7486407|pir||T04462 hypothetical protein F4D11.160 - Arabidopsis thaliana gi|3063706|emb|CAA18597.1| putative protein [Arabidopsis thaliana]

 Score =  261 bits (668), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 126/198 (63%), Positives = 149/198 (75%), Gaps = 14/198 (7%)

Query: 2   SSSSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPS 61
           SSSS  ++ETRQ     PPPP TS Y+V+DTGNCSPRY+RC++NQIPCT +LL  S M  
Sbjct: 341 SSSSPTVFETRQSNQANPPPPATSDYVVRDTGNCSPRYMRCTINQIPCTVDLLSTSGMQL 400

Query: 62  ALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL--- 118
           ALMVQ LAL  PSE+PI VVDFGE G VRC  C+GY NPFM+F+D G+ F+CNFCG    
Sbjct: 401 ALMVQPLALSHPSEEPIQVVDFGEGGPVRCSRCKGYINPFMKFIDQGRKFICNFCGYTDE 460

Query: 119 -----------DGRCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQT 167
                      DGR  D DERPELCRGTVEF A++E+M+R+ MP VYFFLIDVS +A+QT
Sbjct: 461 TPRDYHCNLGPDGRRRDVDERPELCRGTVEFVATKEYMVRDPMPAVYFFLIDVSMNAIQT 520

Query: 168 GATAAACSAIMQVISDLP 185
           GATAAAC+AI QV+SDLP
Sbjct: 521 GATAAACNAIQQVLSDLP 538

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131342|ref|XP_002328515.1| predicted protein [Populus trichocarpa] gi|222838230|gb|EEE76595.1| predicted protein [Populus trichocarpa]

 Score =  259 bits (663), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 126/196 (64%), Positives = 147/196 (75%), Gaps = 14/196 (7%)

Query: 4   SSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSAL 63
           SSVIL++TR G    PPPP TS YIV DTGNCSPRY+RC++NQIPCT +LL  S M  AL
Sbjct: 321 SSVILHDTRAGNQANPPPPATSDYIVTDTGNCSPRYMRCTINQIPCTVDLLSTSGMQLAL 380

Query: 64  MVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL----- 118
           +VQ LALP  SE+ + VVDFGESG VRC  C+GY NPFM+F+D G+ F+CN CG      
Sbjct: 381 LVQPLALPHSSEEAVQVVDFGESGPVRCSRCKGYINPFMKFIDQGRRFICNLCGFTDETP 440

Query: 119 ---------DGRCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGA 169
                    DGR  DADERPELCRGTVEF A++EFM+R+ MP VYFFLIDVS  A+QTGA
Sbjct: 441 RDYLCNLGPDGRRRDADERPELCRGTVEFVATKEFMVRDPMPAVYFFLIDVSMHAIQTGA 500

Query: 170 TAAACSAIMQVISDLP 185
           TAAACS+I QVI+DLP
Sbjct: 501 TAAACSSISQVIADLP 516

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297802748|ref|XP_002869258.1| hypothetical protein ARALYDRAFT_491448 [Arabidopsis lyrata subsp. lyrata] gi|297315094|gb|EFH45517.1| hypothetical protein ARALYDRAFT_491448 [Arabidopsis lyrata subsp. lyrata]

 Score =  259 bits (663), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 125/198 (63%), Positives = 148/198 (74%), Gaps = 14/198 (7%)

Query: 2   SSSSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPS 61
           SSSS  ++ETRQ     PPPP TS Y+V+DTGNCSPRY+RC++NQIPCT +LL  S M  
Sbjct: 341 SSSSPTVFETRQNNQANPPPPATSDYVVRDTGNCSPRYMRCTINQIPCTVDLLSTSGMQL 400

Query: 62  ALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL--- 118
           ALMVQ LAL  PSE+PI VVDFGE G VRC  C+GY NPFM+F+D G+ F+CNFCG    
Sbjct: 401 ALMVQPLALSHPSEEPIQVVDFGEGGPVRCSRCKGYINPFMKFIDQGRKFICNFCGYTDE 460

Query: 119 -----------DGRCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQT 167
                      DGR  D DERPELCRGTVE  A++E+M+R+ MP VYFFLIDVS +A+QT
Sbjct: 461 TPRDYHCNLGPDGRRRDVDERPELCRGTVELVATKEYMVRDPMPAVYFFLIDVSMNAIQT 520

Query: 168 GATAAACSAIMQVISDLP 185
           GATAAAC+AI QV+SDLP
Sbjct: 521 GATAAACNAIQQVLSDLP 538

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545386|ref|XP_002513753.1| Protein transport protein Sec24C, putative [Ricinus communis] gi|223546839|gb|EEF48336.1| Protein transport protein Sec24C, putative [Ricinus communis]

 Score =  258 bits (659), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 124/197 (62%), Positives = 148/197 (75%), Gaps = 14/197 (7%)

Query: 3   SSSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSA 62
           SS++I++ETRQG    PPPP TS+Y+V+DTGNCSPRY+RC++NQIPCT +LL  S M  A
Sbjct: 339 SSTIIVHETRQGNQANPPPPATSEYMVRDTGNCSPRYMRCTINQIPCTVDLLNTSGMQLA 398

Query: 63  LMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL---- 118
           L+VQ LAL  PSE+PI VVDFGESG VRC  C+GY NPFM F+D G+ F+CN CG     
Sbjct: 399 LLVQPLALLPPSEEPIQVVDFGESGPVRCSRCKGYINPFMRFIDQGRRFICNLCGFTDET 458

Query: 119 ----------DGRCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTG 168
                     DGR  DADERPELCRG VEF A++E+M+R  MP VYFFLIDVS +A+QTG
Sbjct: 459 PRDYHCNLGPDGRRRDADERPELCRGAVEFVATKEYMVREPMPAVYFFLIDVSINAIQTG 518

Query: 169 ATAAACSAIMQVISDLP 185
           A AAAC AI +VISDLP
Sbjct: 519 AVAAACIAISRVISDLP 535

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
TAIR|locus:2100202	1096	CEF "AT3G44340" [Arabidopsis t	0.983	0.167	0.606	1.6e-57
ZFIN|ZDB-GENE-030131-4487	1241	sec24c "SEC24 family, member C	0.871	0.131	0.402	1.6e-29
UNIPROTKB|E7EP00	975	SEC24C "Protein transport prot	0.871	0.167	0.402	2.9e-29
UNIPROTKB|G5EA31	1042	SEC24C "SEC24 related gene fam	0.871	0.156	0.402	3.2e-29
UNIPROTKB|P53992	1094	SEC24C "Protein transport prot	0.871	0.148	0.402	3.5e-29
UNIPROTKB|E1BIU0	1094	SEC24C "Uncharacterized protei	0.871	0.148	0.407	4.5e-29
UNIPROTKB|E1BUD8	1119	SEC24C "Uncharacterized protei	0.866	0.144	0.405	6e-29
UNIPROTKB|E2RE90	1096	SEC24C "Uncharacterized protei	0.871	0.148	0.396	9.4e-29
UNIPROTKB|J9JHK6	1119	SEC24C "Uncharacterized protei	0.871	0.145	0.396	9.7e-29
RGD|1597739	1027	Sec24c "SEC24 family, member C	0.871	0.158	0.396	1.1e-28

TAIR|locus:2100202 CEF "AT3G44340" [Arabidopsis thaliana (taxid:3702)]

 Score = 600 (216.3 bits), Expect = 1.6e-57, P = 1.6e-57
 Identities = 120/198 (60%), Positives = 143/198 (72%)

Query:     2 SSSSVILYETRQGKSVKXXXXVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPS 61
             SSSS I+YETR           T  YI +DTGN SPRY+RC++NQIPCT +LL  S M  
Sbjct:   344 SSSSPIVYETRVENKANPPPPTTVDYITRDTGNSSPRYMRCTINQIPCTVDLLSTSGMQL 403

Query:    62 ALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL--- 118
             AL+VQ +AL  PSE+PI VVDFGESG VRC  C+GY NPFM+F+D G+ F+CN CG    
Sbjct:   404 ALIVQPMALSHPSEEPIQVVDFGESGPVRCSRCKGYVNPFMKFIDQGRKFICNLCGYTDE 463

Query:   119 -----------DGRCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQT 167
                        DGR  DADERPELCRGTV+F A++E+M+R+ MP VYFFLIDVS +A+QT
Sbjct:   464 TPRDYQCNLGPDGRRRDADERPELCRGTVDFVATKEYMVRDPMPAVYFFLIDVSMNAIQT 523

Query:   168 GATAAACSAIMQVISDLP 185
             GATAAACSAI QV+SDLP
Sbjct:   524 GATAAACSAIQQVLSDLP 541

GO:0005215 "transporter activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

ZFIN|ZDB-GENE-030131-4487 sec24c "SEC24 family, member C (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 340 (124.7 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 72/179 (40%), Positives = 102/179 (56%)

Query:    23 VTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVD 82
             VT+++ VKD GN SPRYIRC+   +PC  ++ K S +P A +++ LA   P E P  +VD
Sbjct:   504 VTTRFQVKDQGNASPRYIRCTAYNMPCNSDMAKQSQVPLAAVIKPLATLPPDESPPYLVD 563

Query:    83 FGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG------------LD--GRCLDADER 128
              GESG +RC  C+ Y  PFM+F++ G+ F C FC             LD  G+ +D  ER
Sbjct:   564 HGESGPIRCNRCKAYMCPFMQFIEGGRRFQCGFCSCVTEVPPHYFQHLDHTGKRVDCYER 623

Query:   129 PELCRGTVEFAASREFMMRNVMP--PVYFFLIDVSTDAVQTGATAAACSAIMQVISDLP 185
             PEL  G+ EF A+ ++   N  P  P + FLIDVS +AV+ G     C  +  ++  LP
Sbjct:   624 PELSMGSYEFMATVDYCKNNKFPQPPAFIFLIDVSYNAVKNGMVGMVCQELKTLMDYLP 682

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|E7EP00 SEC24C "Protein transport protein Sec24C" [Homo sapiens (taxid:9606)]

 Score = 336 (123.3 bits), Expect = 2.9e-29, P = 2.9e-29
 Identities = 72/179 (40%), Positives = 104/179 (58%)

Query:    23 VTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVD 82
             VT+ ++VKD GN SPRYIRC+   IPCT ++ K + +P A +++ LA   P E    VVD
Sbjct:   238 VTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVD 297

Query:    83 FGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG------------LD--GRCLDADER 128
              GESG +RC  C+ Y  PFM+F++ G+ F C FC             LD  G+ +DA +R
Sbjct:   298 HGESGPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVDAYDR 357

Query:   129 PELCRGTVEFAASREFMMRNVMP--PVYFFLIDVSTDAVQTGATAAACSAIMQVISDLP 185
             PEL  G+ EF A+ ++   N  P  P + F+IDVS +A++TG     C  +  ++  LP
Sbjct:   358 PELSLGSYEFLATVDYCKNNKFPSPPAFIFMIDVSYNAIRTGLVRLLCEELKSLLDFLP 416

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|G5EA31 SEC24C "SEC24 related gene family, member C (S. cerevisiae), isoform CRA_b" [Homo sapiens (taxid:9606)]

 Score = 336 (123.3 bits), Expect = 3.2e-29, P = 3.2e-29
 Identities = 72/179 (40%), Positives = 104/179 (58%)

Query:    23 VTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVD 82
             VT+ ++VKD GN SPRYIRC+   IPCT ++ K + +P A +++ LA   P E    VVD
Sbjct:   357 VTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVD 416

Query:    83 FGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG------------LD--GRCLDADER 128
              GESG +RC  C+ Y  PFM+F++ G+ F C FC             LD  G+ +DA +R
Sbjct:   417 HGESGPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVDAYDR 476

Query:   129 PELCRGTVEFAASREFMMRNVMP--PVYFFLIDVSTDAVQTGATAAACSAIMQVISDLP 185
             PEL  G+ EF A+ ++   N  P  P + F+IDVS +A++TG     C  +  ++  LP
Sbjct:   477 PELSLGSYEFLATVDYCKNNKFPSPPAFIFMIDVSYNAIRTGLVRLLCEELKSLLDFLP 535

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|P53992 SEC24C "Protein transport protein Sec24C" [Homo sapiens (taxid:9606)]

 Score = 336 (123.3 bits), Expect = 3.5e-29, P = 3.5e-29
 Identities = 72/179 (40%), Positives = 104/179 (58%)

Query:    23 VTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVD 82
             VT+ ++VKD GN SPRYIRC+   IPCT ++ K + +P A +++ LA   P E    VVD
Sbjct:   357 VTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVD 416

Query:    83 FGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG------------LD--GRCLDADER 128
              GESG +RC  C+ Y  PFM+F++ G+ F C FC             LD  G+ +DA +R
Sbjct:   417 HGESGPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVDAYDR 476

Query:   129 PELCRGTVEFAASREFMMRNVMP--PVYFFLIDVSTDAVQTGATAAACSAIMQVISDLP 185
             PEL  G+ EF A+ ++   N  P  P + F+IDVS +A++TG     C  +  ++  LP
Sbjct:   477 PELSLGSYEFLATVDYCKNNKFPSPPAFIFMIDVSYNAIRTGLVRLLCEELKSLLDFLP 535

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=NAS;TAS

GO:0030127 "COPII vesicle coat" evidence=NAS

GO:0003674 "molecular_function" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0012507 "ER to Golgi transport vesicle membrane" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

GO:0043687 "post-translational protein modification" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0048208 "COPII vesicle coating" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|E1BIU0 SEC24C "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 335 (123.0 bits), Expect = 4.5e-29, P = 4.5e-29
 Identities = 73/179 (40%), Positives = 105/179 (58%)

Query:    23 VTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVD 82
             VT+ ++VKD GN SPRYIRC+   IPCT ++ K + +P A +++ LA   P E    VVD
Sbjct:   357 VTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVD 416

Query:    83 FGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG------------LD--GRCLDADER 128
              GESG +RC  C+ Y  PFM+FV+ G+ F C FC             LD  G+ +DA +R
Sbjct:   417 HGESGPLRCNRCKAYMCPFMQFVEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVDAYDR 476

Query:   129 PELCRGTVEFAASREFMMRNV--MPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLP 185
             PEL  G+ EF A+ ++   N   +PP + F+IDVS +AV++G     C  +  ++  LP
Sbjct:   477 PELSLGSYEFLATVDYCKNNKFPIPPAFIFMIDVSYNAVRSGLVRLLCEELKSLLDFLP 535

GO:0005634 "nucleus" evidence=IEA

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|E1BUD8 SEC24C "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 334 (122.6 bits), Expect = 6.0e-29, P = 6.0e-29
 Identities = 73/180 (40%), Positives = 106/180 (58%)

Query:    23 VTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIP-VV 81
             VT+ ++VKD GN SPRYIRC+   IPCT ++ K S +P A +++ LA   P E+ +P +V
Sbjct:   382 VTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQSQVPLAAVIKPLATLPP-EETLPYLV 440

Query:    82 DFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG------------LD--GRCLDADE 127
             D GESG VRC  C+ Y  PFM+F++ G+ F C FC             LD  G+ +D  +
Sbjct:   441 DHGESGPVRCNRCKAYMCPFMQFIEGGRRFQCCFCSCVTEVPAHYFQHLDHTGKRVDFYD 500

Query:   128 RPELCRGTVEFAASREFMMRNVMP--PVYFFLIDVSTDAVQTGATAAACSAIMQVISDLP 185
             RPEL  G+ EF A+ ++   N  P  P + F+IDVS +AV++G     C  +  ++  LP
Sbjct:   501 RPELSLGSYEFLATVDYCKNNKFPSPPAFIFMIDVSYNAVKSGLVRLICEELKSILDYLP 560

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E2RE90 SEC24C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 332 (121.9 bits), Expect = 9.4e-29, P = 9.4e-29
 Identities = 71/179 (39%), Positives = 104/179 (58%)

Query:    23 VTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVD 82
             VT+ ++VKD GN SPRYIRC+   IPCT ++ K + +P A +++ LA   P E    VVD
Sbjct:   359 VTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVD 418

Query:    83 FGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG------------LD--GRCLDADER 128
              GESG +RC  C+ Y  PFM+F++ G+ F C FC             LD  G+ +DA +R
Sbjct:   419 HGESGPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVDAYDR 478

Query:   129 PELCRGTVEFAASREFMMRNVMP--PVYFFLIDVSTDAVQTGATAAACSAIMQVISDLP 185
             PEL  G+ EF A+ ++   N  P  P + F+IDVS +A+++G     C  +  ++  LP
Sbjct:   479 PELSLGSYEFLATVDYCKNNKFPSPPAFIFMIDVSYNAIRSGLVRLLCEELKSLLDFLP 537

GO:0005634 "nucleus" evidence=IEA

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|J9JHK6 SEC24C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 332 (121.9 bits), Expect = 9.7e-29, P = 9.7e-29
 Identities = 71/179 (39%), Positives = 104/179 (58%)

Query:    23 VTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVD 82
             VT+ ++VKD GN SPRYIRC+   IPCT ++ K + +P A +++ LA   P E    VVD
Sbjct:   382 VTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVD 441

Query:    83 FGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG------------LD--GRCLDADER 128
              GESG +RC  C+ Y  PFM+F++ G+ F C FC             LD  G+ +DA +R
Sbjct:   442 HGESGPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVDAYDR 501

Query:   129 PELCRGTVEFAASREFMMRNVMP--PVYFFLIDVSTDAVQTGATAAACSAIMQVISDLP 185
             PEL  G+ EF A+ ++   N  P  P + F+IDVS +A+++G     C  +  ++  LP
Sbjct:   502 PELSLGSYEFLATVDYCKNNKFPSPPAFIFMIDVSYNAIRSGLVRLLCEELKSLLDFLP 560

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

RGD|1597739 Sec24c "SEC24 family, member C (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 331 (121.6 bits), Expect = 1.1e-28, P = 1.1e-28
 Identities = 71/179 (39%), Positives = 103/179 (57%)

Query:    23 VTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVD 82
             VT+ ++VKD GN SPRYIRC+   IPCT ++ K + +P A +++ LA   P E    VVD
Sbjct:   290 VTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVD 349

Query:    83 FGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG------------LD--GRCLDADER 128
              GESG +RC  C+ Y  P M F++ G+ F C+FC             LD  G+ +DA +R
Sbjct:   350 HGESGPLRCNRCKAYMCPLMTFIEGGRRFQCSFCSCINDVPPQYFQHLDHTGKRVDAYDR 409

Query:   129 PELCRGTVEFAASREFMMRNVMP--PVYFFLIDVSTDAVQTGATAAACSAIMQVISDLP 185
             PEL  G+ EF A+ ++   N  P  P + F+IDVS +A++TG     C  +  ++  LP
Sbjct:   410 PELSLGSYEFLATVDYCKNNKFPSPPAFIFMIDVSYNAIRTGLVRLLCEELKSLLDYLP 468

GO:0005634 "nucleus" evidence=ISO

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	187
COG5028	861	COG5028, COG5028, Vesicle coat complex COPII, subu	3e-36
cd01479	244	cd01479, Sec24-like, Sec24-like: Protein and membr	1e-09
pfam04811	241	pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain	3e-09
cd01468	239	cd01468, trunk_domain, trunk domain	3e-08
pfam04810	39	pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger	4e-08
PTZ00395	1560	PTZ00395, PTZ00395, Sec24-related protein; Provisi	5e-07
PLN00162	761	PLN00162, PLN00162, transport protein sec23; Provi	9e-04

>gnl|CDD|227361 COG5028, COG5028, Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]

 Score =  132 bits (335), Expect = 3e-36
 Identities = 68/182 (37%), Positives = 104/182 (57%), Gaps = 16/182 (8%)

Query: 20  PPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIP 79
            PP+T+ ++  +  NCSP+Y+R ++  IP T +LLK S +P  L+++      P EDP+P
Sbjct: 133 VPPLTTNFVGSEQSNCSPKYVRSTMYAIPETNDLLKKSKIPFGLVIRPFLELYPEEDPVP 192

Query: 80  VVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL--------------DGRCLDA 125
           +V+ G   +VRC  CR Y NPF++F++ G+ + CN C                +    D 
Sbjct: 193 LVEDGS--IVRCRRCRSYINPFVQFIEQGRKWRCNICRSKNDVPEGFDNPSGPNDPRSDR 250

Query: 126 DERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLP 185
             RPEL  G V+F A +E+ +R   PPVY FLIDVS +A++ G   AA  AI++ +  +P
Sbjct: 251 YSRPELKSGVVDFLAPKEYSLRQPPPPVYVFLIDVSFEAIKNGLVKAAIRAILENLDQIP 310

Query: 186 VF 187
            F
Sbjct: 311 NF 312

Length = 861

>gnl|CDD|238756 cd01479, Sec24-like, Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 17/38 (44%), Positives = 25/38 (65%)

Query: 150 MPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLPVF 187
            P VY FLIDVS +A+++G  A AC A++  + +LP  
Sbjct: 2   QPAVYVFLIDVSYNAIKSGLLATACEALLSNLDNLPGD 39

The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 24 is very similar to Sec23. The Sec23 and Sec24 polypeptides fold into five distinct domains: a beta-barrel, a zinc finger, a vWA or trunk, an all helical region and a carboxy Gelsolin domain. The members of this subgroup carry a partial MIDAS motif and have the overall Para-Rossmann type fold that is characteristic of this superfamily. Length = 244

>gnl|CDD|147125 pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain

 Score = 54.2 bits (131), Expect = 3e-09
 Identities = 15/36 (41%), Positives = 25/36 (69%)

Query: 150 MPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLP 185
            PPV+ F+IDVS +A+++G  AA   +++Q +  LP
Sbjct: 2   QPPVFLFVIDVSYNAIKSGLLAALKESLLQSLDLLP 37

COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Length = 241

>gnl|CDD|238745 cd01468, trunk_domain, trunk domain

 Score = 51.5 bits (124), Expect = 3e-08
 Identities = 13/36 (36%), Positives = 22/36 (61%)

Query: 150 MPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLP 185
            PPV+ F+IDVS +A++ G   A   +++  +  LP
Sbjct: 2   QPPVFVFVIDVSYEAIKEGLLQALKESLLASLDLLP 37

COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins. Length = 239

>gnl|CDD|203092 pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger

 Score = 47.2 bits (113), Expect = 4e-08
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 89  VRCCCCRGYRNPFMEFVDNGKSFVCNFCG 117
           VRC  CR Y NP+ +F   G+ + CN CG
Sbjct: 2   VRCRRCRAYLNPYCQFDFGGRRWTCNLCG 30

COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is found to be zinc binding domain. Length = 39

>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional

 Score = 48.9 bits (116), Expect = 5e-07
 Identities = 35/107 (32%), Positives = 48/107 (44%), Gaps = 8/107 (7%)

Query: 20  PPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSE--DP 77
           PP     YI  DTG   PR+++ +L QIP     LKLS +P  ++V   A  +  E  D 
Sbjct: 635 PPSYYQPYISIDTGKADPRFLKSTLYQIPLFSETLKLSQIPFGIIVNPFACLNEGEGIDK 694

Query: 78  IPVVDFGESG-----LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLD 119
           I + D          ++RC  C GY +  +   D   S  C FC  D
Sbjct: 695 IDMKDIINDKEENIEILRCPKCLGYLHATI-LEDISSSVQCVFCDTD 740

Length = 1560

>gnl|CDD|215083 PLN00162, PLN00162, transport protein sec23; Provisional

 Score = 38.8 bits (91), Expect = 9e-04
 Identities = 41/160 (25%), Positives = 64/160 (40%), Gaps = 30/160 (18%)

Query: 40  IRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRN 99
           +R S N  P +    K+ +    + +  L  P      +PV+ +     +RC  CR   N
Sbjct: 12  VRMSWNVWPSS----KIEASKCVIPLAALYTPLKPLPELPVLPYDP---LRCRTCRAVLN 64

Query: 100 PFMEFVD-NGKSFVCNFCGLDGRC-------------LDADERPELCRGTVEFAASREFM 145
           P+   VD   K ++C FC    R              L A+  P+    TVE+       
Sbjct: 65  PYCR-VDFQAKIWICPFC--FQRNHFPPHYSSISETNLPAELFPQYT--TVEYTLPP-GS 118

Query: 146 MRNVMPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLP 185
                PPV+ F++D      + G   A  SA++Q I+ LP
Sbjct: 119 GGAPSPPVFVFVVDTCMIEEELG---ALKSALLQAIALLP 155

Length = 761

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	187
KOG1984	1007	consensus Vesicle coat complex COPII, subunit SFB3	100.0
KOG1985	887	consensus Vesicle coat complex COPII, subunit SEC2	100.0
COG5028	861	Vesicle coat complex COPII, subunit SEC24/subunit	100.0
PLN00162	761	transport protein sec23; Provisional	100.0
PTZ00395	1560	Sec24-related protein; Provisional	100.0
KOG1986	745	consensus Vesicle coat complex COPII, subunit SEC2	99.95
COG5047	755	SEC23 Vesicle coat complex COPII, subunit SEC23 [I	99.92
PF04810	40	zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro:	99.52
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	87.99
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	86.5
PF09723	42	Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR0134	80.47

>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.9e-50  Score=372.04  Aligned_cols=169  Identities=53%  Similarity=1.083  Sum_probs=163.3

Q ss_pred             CCCCCCcceeEecCCCCCCCCeeEeeccccCCCHHHhhhcCCceEEEEecCCCCCCCCCCCceeccCCCCceecCCCCeE
Q 029839           18 KPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGY   97 (187)
Q Consensus        18 ~~pp~~~~~~~~~d~gn~~p~~iR~T~~~~P~~~~~~~~~~iPlgi~v~Pf~~~~~~e~~ip~v~~~~~~~~RC~~C~ay   97 (187)
                      .+||++||+|++.|||||+|+|||+|+|+||.|.++++.++||||++|+||+.+.+.|+++|+||+++.+++||++|+||
T Consensus       268 ~~PPl~TTd~~~~DqGN~sPr~mr~T~Y~iP~T~Dl~~as~iPLalvIqPfa~l~p~E~~~~vVd~g~sgPvRC~RCkaY  347 (1007)
T KOG1984|consen  268 QPPPLVTTDFFIQDQGNCSPRFMRCTMYTIPCTNDLLKASQIPLALVIQPFATLTPNEAPVPVVDLGESGPVRCNRCKAY  347 (1007)
T ss_pred             CCCCCcccceEEeccCCCCcchheeecccCCccHhHHHhcCCcceeEecccccCCcccCCCceecCCCCCCcchhhhhhh
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCceEEEeCCceEEEecCCC--------------CCcccCCCCCCccCCccEEEEechhhhcc--CCCCcEEEEEEEcc
Q 029839           98 RNPFMEFVDNGKSFVCNFCGL--------------DGRCLDADERPELCRGTVEFAASREFMMR--NVMPPVYFFLIDVS  161 (187)
Q Consensus        98 iNp~~~~~~~g~~w~C~~C~~--------------~~~~~~~~~~pEL~~~tvE~~~p~~y~~r--~~~pp~~vFvID~s  161 (187)
                      +|||++|+++|++|+||||+.              +++|.|.+.||||..|+|||+++++|+.+  .+.||+|||+||||
T Consensus       348 inPFmqF~~~gr~f~Cn~C~~~n~vp~~yf~~L~~~grr~D~~erpEL~~Gt~dfvatk~Y~~~~k~p~ppafvFmIDVS  427 (1007)
T KOG1984|consen  348 INPFMQFIDGGRKFICNFCGSKNQVPDDYFNHLGPTGRRVDVEERPELCLGTVDFVATKDYCRKTKPPKPPAFVFMIDVS  427 (1007)
T ss_pred             cCcceEEecCCceEEecCCCccccCChhhcccCCCcccccccccCchhcccccceeeehhhhhcCCCCCCceEEEEEEee
Confidence            999999999999999999998              25678999999999999999999999987  89999999999999


Q ss_pred             hhhHhhcHHHHHHHHHHHHHhcCCC
Q 029839          162 TDAVQTGATAAACSAIMQVISDLPV  186 (187)
Q Consensus       162 ~~~~~~g~l~~~~~sL~~~L~~lP~  186 (187)
                      ++++++|++.+++++|++.|+.||.
T Consensus       428 y~Ai~~G~~~a~ce~ik~~l~~lp~  452 (1007)
T KOG1984|consen  428 YNAISNGAVKAACEAIKSVLEDLPR  452 (1007)
T ss_pred             hhhhhcchHHHHHHHHHHHHhhcCc
Confidence            9999999999999999999999985

>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-43  Score=327.24  Aligned_cols=154  Identities=43%  Similarity=0.796  Sum_probs=143.1

Q ss_pred             CCCCCCCCeeEeeccccCCCHHHhhhcCCceEEEEecCCCCCCCCCCCceeccCCCCceecCCCCeEEcCceEEEeCCce
Q 029839           31 DTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKS  110 (187)
Q Consensus        31 d~gn~~p~~iR~T~~~~P~~~~~~~~~~iPlgi~v~Pf~~~~~~e~~ip~v~~~~~~~~RC~~C~ayiNp~~~~~~~g~~  110 (187)
                      +..||+|+|+|+|++.||.+++++++++||||++|+||+++. +..++|++.  ...|+||++||+|||||+.|++.|++
T Consensus       164 ~~~nc~p~y~RsTl~~iP~t~sLl~kskLPlglvv~Pf~~~~-d~~~~p~~~--~~~IvRCr~CRtYiNPFV~fid~gr~  240 (887)
T KOG1985|consen  164 ESSNCSPSYVRSTLSAIPQTQSLLKKSKLPLGLVVHPFAHLD-DIDPLPVIT--STLIVRCRRCRTYINPFVEFIDQGRR  240 (887)
T ss_pred             cccCCCHHHHHHHHHhCCccHHHHHhcCCCceEEEeeccccc-ccCCCCccc--CCceeeehhhhhhcCCeEEecCCCce
Confidence            568999999999999999999999999999999999999887 334566655  67899999999999999999999999


Q ss_pred             EEEecCCCC-------------CcccCCCCCCccCCccEEEEechhhhccCCCCcEEEEEEEcchhhHhhcHHHHHHHHH
Q 029839          111 FVCNFCGLD-------------GRCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAACSAI  177 (187)
Q Consensus       111 w~C~~C~~~-------------~~~~~~~~~pEL~~~tvE~~~p~~y~~r~~~pp~~vFvID~s~~~~~~g~l~~~~~sL  177 (187)
                      |+||+|+..             +.+.|+.+||||++++|||++|.||+.|+|+|++|||+||||..++|+|+|++++++|
T Consensus       241 WrCNlC~~~NdvP~~f~~~~~t~~~~~~~~RpEl~~s~vE~iAP~eYmlR~P~Pavy~FliDVS~~a~ksG~L~~~~~sl  320 (887)
T KOG1985|consen  241 WRCNLCGRVNDVPDDFDWDPLTGAYGDPYSRPELTSSVVEFIAPSEYMLRPPQPAVYVFLIDVSISAIKSGYLETVARSL  320 (887)
T ss_pred             eeechhhhhcCCcHHhhcCccccccCCcccCccccceeEEEecCcccccCCCCCceEEEEEEeehHhhhhhHHHHHHHHH
Confidence            999999992             3467899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCC
Q 029839          178 MQVISDLPVF  187 (187)
Q Consensus       178 ~~~L~~lP~~  187 (187)
                      ++.||.||++
T Consensus       321 L~~LD~lpgd  330 (887)
T KOG1985|consen  321 LENLDALPGD  330 (887)
T ss_pred             HHhhhcCCCC
Confidence            9999999964

>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]

Probab=100.00  E-value=3.1e-43  Score=322.59  Aligned_cols=167  Identities=40%  Similarity=0.809  Sum_probs=154.0

Q ss_pred             CCCCCCcceeEecCCCCCCCCeeEeeccccCCCHHHhhhcCCceEEEEecCCCCCCCCCCCceeccCCCCceecCCCCeE
Q 029839           18 KPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGY   97 (187)
Q Consensus        18 ~~pp~~~~~~~~~d~gn~~p~~iR~T~~~~P~~~~~~~~~~iPlgi~v~Pf~~~~~~e~~ip~v~~~~~~~~RC~~C~ay   97 (187)
                      ..||+ ++.++..+++||+|+|+|+|+|++|.+.+++++++||||++|+||.++-+.+.++|+++  +..|+||++||+|
T Consensus       132 ~~ppl-tt~~~~~e~~n~~p~yvrsT~yaiP~t~dl~~~skiPfgLVI~Pf~~l~~e~~~vpl~~--d~~ivRCrrCrsY  208 (861)
T COG5028         132 IVPPL-TTNFVGSEQSNCSPKYVRSTMYAIPETNDLLKKSKIPFGLVIRPFLELYPEEDPVPLVE--DGSIVRCRRCRSY  208 (861)
T ss_pred             CCCCc-ccceeeeccCCCCHHHHHHHHhhCCCchhHHHhcCCCceEEeehhhhcCccCCCCccCC--CCcchhhhhhHhh
Confidence            35666 99999999999999999999999999999999999999999999999888777788876  3448999999999


Q ss_pred             EcCceEEEeCCceEEEecCCCCC--------------cccCCCCCCccCCccEEEEechhhhccCCCCcEEEEEEEcchh
Q 029839           98 RNPFMEFVDNGKSFVCNFCGLDG--------------RCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTD  163 (187)
Q Consensus        98 iNp~~~~~~~g~~w~C~~C~~~~--------------~~~~~~~~pEL~~~tvE~~~p~~y~~r~~~pp~~vFvID~s~~  163 (187)
                      +|||.+|+++|++|+||+|+..+              .|.|+..|+||.+++|||++|++|+.|.+.|++|||+||||..
T Consensus       209 iNPfv~fi~~g~kw~CNiC~~kN~vp~~~~~~~~~~~~r~d~~~r~El~~~vvdf~ap~~Y~~~~p~P~~yvFlIDVS~~  288 (861)
T COG5028         209 INPFVQFIEQGRKWRCNICRSKNDVPEGFDNPSGPNDPRSDRYSRPELKSGVVDFLAPKEYSLRQPPPPVYVFLIDVSFE  288 (861)
T ss_pred             cCceEEEecCCcEEEEeeccccccCcccccCcCCCCCccccccccchhhceeeEEecccceeeccCCCCEEEEEEEeehH
Confidence            99999999999999999999832              2456889999999999999999999999999999999999999


Q ss_pred             hHhhcHHHHHHHHHHHHHhcCCCC
Q 029839          164 AVQTGATAAACSAIMQVISDLPVF  187 (187)
Q Consensus       164 ~~~~g~l~~~~~sL~~~L~~lP~~  187 (187)
                      ++++|++.++.++|++.|+.+|++
T Consensus       289 a~~~g~~~a~~r~Il~~l~~~~~~  312 (861)
T COG5028         289 AIKNGLVKAAIRAILENLDQIPNF  312 (861)
T ss_pred             hhhcchHHHHHHHHHhhccCCCCC
Confidence            999999999999999999999763

>PLN00162 transport protein sec23; Provisional

Probab=100.00  E-value=9.4e-37  Score=288.51  Aligned_cols=142  Identities=25%  Similarity=0.337  Sum_probs=127.6

Q ss_pred             CCCCeeEeeccccCCCHHHhhhcCCceEEEEecCCCCCCCCCCCceeccCCCCceecCCCCeEEcCceEEEeCCceEEEe
Q 029839           35 CSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCN  114 (187)
Q Consensus        35 ~~p~~iR~T~~~~P~~~~~~~~~~iPlgi~v~Pf~~~~~~e~~ip~v~~~~~~~~RC~~C~ayiNp~~~~~~~g~~w~C~  114 (187)
                      .+-++||+|||+||.++.++++++|||||+||||++..    ++|+++   .+|+||++|+|||||||+|+.+|++|+||
T Consensus         7 e~~~gvR~s~n~~P~t~~~~~~~~iPlg~v~tPl~~~~----~vp~v~---~~pvRC~~CraylNPf~~~d~~~~~W~C~   79 (761)
T PLN00162          7 EAIDGVRMSWNVWPSSKIEASKCVIPLAALYTPLKPLP----ELPVLP---YDPLRCRTCRAVLNPYCRVDFQAKIWICP   79 (761)
T ss_pred             cccCceEeeeecCCCCHHHHhcCCCCeEEEEecCCcCC----CCCcCC---CCCCccCCCcCEECCceEEecCCCEEEcc
Confidence            46689999999999999999999999999999999864    388887   57999999999999999999999999999


Q ss_pred             cCCCCCc----c---cCCCCCCcc--CCccEEEEechhhhccCCCCcEEEEEEEcchhhHhhcHHHHHHHHHHHHHhcCC
Q 029839          115 FCGLDGR----C---LDADERPEL--CRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLP  185 (187)
Q Consensus       115 ~C~~~~~----~---~~~~~~pEL--~~~tvE~~~p~~y~~r~~~pp~~vFvID~s~~~~~~g~l~~~~~sL~~~L~~lP  185 (187)
                      ||+..|.    +   .+.+.+|||  +++||||++|. |+.+++.||+|+||||+|..+++   ++.++++|+++|+.||
T Consensus        80 ~C~~~N~~P~~Y~~~~~~~~p~EL~p~~~TvEY~~p~-~~~~~~~pp~fvFvID~s~~~~~---l~~lk~sl~~~L~~LP  155 (761)
T PLN00162         80 FCFQRNHFPPHYSSISETNLPAELFPQYTTVEYTLPP-GSGGAPSPPVFVFVVDTCMIEEE---LGALKSALLQAIALLP  155 (761)
T ss_pred             CCCCCCCCchHhcccCccCCChhhcCCceeEEEECCC-CCCCCCCCcEEEEEEecchhHHH---HHHHHHHHHHHHHhCC
Confidence            9999643    1   235678999  89999999998 88889999999999999999887   6667899999999999


Q ss_pred             CC
Q 029839          186 VF  187 (187)
Q Consensus       186 ~~  187 (187)
                      ++
T Consensus       156 ~~  157 (761)
T PLN00162        156 EN  157 (761)
T ss_pred             CC
Confidence            74

>PTZ00395 Sec24-related protein; Provisional

Probab=100.00  E-value=3.5e-33  Score=268.09  Aligned_cols=136  Identities=29%  Similarity=0.475  Sum_probs=113.1

Q ss_pred             CCceEEeccCCCCcCCCCCCcceeEecCCCCCCCCeeEeeccccCCCHHHhhhcCCceEEEEecCCCCCCCCCCCceecc
Q 029839            4 SSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDF   83 (187)
Q Consensus         4 ~~~~~~~t~~~~~~~~pp~~~~~~~~~d~gn~~p~~iR~T~~~~P~~~~~~~~~~iPlgi~v~Pf~~~~~~e~~ip~v~~   83 (187)
                      ....+|+|+++.   .||+.+++|+++|+|||+|+|||+|||.||.+.++++.+.|||||+|+||+.+.++| .||.++.
T Consensus       622 ~~~~~~~t~k~~---~pp~~~~~~~~~dtgn~dP~~~r~tmY~iP~~~~~~~~~~iP~gi~v~Pfa~~~~~e-~~~~~~~  697 (1560)
T PTZ00395        622 KNLKVFETCKYI---SPPSYYQPYISIDTGKADPRFLKSTLYQIPLFSETLKLSQIPFGIIVNPFACLNEGE-GIDKIDM  697 (1560)
T ss_pred             ccchhhhhccCC---CCCCCCCceEEeecCCCChhhhhhhhhcCcchHHHHHhcCCCceeecchhhhcCCCC-CCcccch
Confidence            456789999764   479999999999999999999999999999999999999999999999999988765 4888876


Q ss_pred             C--------CCCceecCCCCeEEcCceEEEeCCceEEEecCCCCCc------------------c-cCCC----CCCccC
Q 029839           84 G--------ESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLDGR------------------C-LDAD----ERPELC  132 (187)
Q Consensus        84 ~--------~~~~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~~~~------------------~-~~~~----~~pEL~  132 (187)
                      .        ..+++||.+|++|+|+++.++.. ++++|+||++...                  + .+.+    -.--|.
T Consensus       698 ~~~~~d~~~~~~~~rc~~c~~y~~~~~~~~~~-~~~~c~~c~~~~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  776 (1560)
T PTZ00395        698 KDIINDKEENIEILRCPKCLGYLHATILEDIS-SSVQCVFCDTDFLINENVLFDIFQYNEKIGHKESDHNEHGNSLSPLL  776 (1560)
T ss_pred             hhcccchhhccceeecchhHhhhcchheeccc-ceEEEEecCCcchhhHHHHHHHHHHhhhhccccccccccccccchhh
Confidence            4        24799999999999999998865 7899999999321                  1 1111    112467


Q ss_pred             CccEEEEechhh
Q 029839          133 RGTVEFAASREF  144 (187)
Q Consensus       133 ~~tvE~~~p~~y  144 (187)
                      +|+||+++|+-|
T Consensus       777 ~~~~~~~~~~~~  788 (1560)
T PTZ00395        777 KGSVDIIIPPIY  788 (1560)
T ss_pred             cCceeEEccchh
Confidence            899999998765

>KOG1986 consensus Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=6.2e-28  Score=220.49  Aligned_cols=141  Identities=27%  Similarity=0.400  Sum_probs=122.7

Q ss_pred             CCCCCCeeEeeccccCCCHHHhhhcCCceEEEEecCCCCCCCCCCCceeccCCCCceecCCCCeEEcCceEEEeCCceEE
Q 029839           33 GNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFV  112 (187)
Q Consensus        33 gn~~p~~iR~T~~~~P~~~~~~~~~~iPlgi~v~Pf~~~~~~e~~ip~v~~~~~~~~RC~~C~ayiNp~~~~~~~g~~w~  112 (187)
                      .+..-++||+|||+||+++....++++|++++++||++...    +|.+.   ++|+||++|+||+||||+++.+.+.|.
T Consensus         5 ~~e~~dGvR~twnvwPs~~~~~~~~vvPla~lytPl~e~~~----~~~~~---y~P~~C~~C~AvlNPyc~vd~~a~~W~   77 (745)
T KOG1986|consen    5 DIEEIDGVRFTWNVWPSTRAEASRTVVPLACLYTPLKERPD----LPPIQ---YDPLRCSKCGAVLNPYCSVDFRAKSWI   77 (745)
T ss_pred             ccccCCCcccccccCCCcccccccccccHHHhccccccCCC----CCccC---CCCchhccchhhcCcceeecccCceEe
Confidence            46778999999999999999999999999999999997543    56665   899999999999999999999999999


Q ss_pred             EecCCCCCc----c---cCCCCCCcc--CCccEEEEechhhhccCCCCcEEEEEEEcchhhHhhcHHHHHHHHHHHHHhc
Q 029839          113 CNFCGLDGR----C---LDADERPEL--CRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAACSAIMQVISD  183 (187)
Q Consensus       113 C~~C~~~~~----~---~~~~~~pEL--~~~tvE~~~p~~y~~r~~~pp~~vFvID~s~~~~~~g~l~~~~~sL~~~L~~  183 (187)
                      |+||..+|.    +   .+.+..+||  ++.+|||++++.    ...||+|+||||++..+.+   |+.++++|+.+|+.
T Consensus        78 CpfC~qrN~~p~~Y~~is~~n~P~el~Pq~stvEy~l~~~----~~~ppvf~fVvDtc~~eee---L~~LkssL~~~l~l  150 (745)
T KOG1986|consen   78 CPFCNQRNPFPPHYSGISENNLPPELLPQYSTVEYTLSPG----RVSPPVFVFVVDTCMDEEE---LQALKSSLKQSLSL  150 (745)
T ss_pred             ccccccCCCCChhhcccCccCCChhhcCCcceeEEecCCC----CCCCceEEEEEeeccChHH---HHHHHHHHHHHHhh
Confidence            999999652    2   234556688  789999999964    3459999999999998855   89999999999999


Q ss_pred             CCCC
Q 029839          184 LPVF  187 (187)
Q Consensus       184 lP~~  187 (187)
                      ||++
T Consensus       151 LP~~  154 (745)
T KOG1986|consen  151 LPEN  154 (745)
T ss_pred             CCCc
Confidence            9985

>COG5047 SEC23 Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion]

Probab=99.92  E-value=2.4e-25  Score=200.31  Aligned_cols=140  Identities=26%  Similarity=0.443  Sum_probs=121.7

Q ss_pred             CCCCCeeEeeccccCCCHHHhhhcCCceEEEEecCCCCCCCCCCCceeccCCCCceecCC-CCeEEcCceEEEeCCceEE
Q 029839           34 NCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCC-CRGYRNPFMEFVDNGKSFV  112 (187)
Q Consensus        34 n~~p~~iR~T~~~~P~~~~~~~~~~iPlgi~v~Pf~~~~~~e~~ip~v~~~~~~~~RC~~-C~ayiNp~~~~~~~g~~w~  112 (187)
                      +.+-++||+|||+||.++.++.++.+|++++|+||++.+.    +++.   .++|+.|.. |+||+||||.++.+.+.|+
T Consensus         6 iee~dgir~twnvfpat~~da~~~~iPia~lY~Pl~e~~~----~~v~---~yepv~C~~pC~avlnpyC~id~r~~~W~   78 (755)
T COG5047           6 IEENDGIRLTWNVFPATRGDATRTVIPIACLYTPLHEDDA----LTVN---YYEPVKCTAPCKAVLNPYCHIDERNQSWI   78 (755)
T ss_pred             hccccceEEEEecccCCccccccccccHHHhccccccccc----cCcc---cCCCceecccchhhcCcceeeccCCceEe
Confidence            5678999999999999999999999999999999998643    4443   488999999 9999999999999999999


Q ss_pred             EecCCCCCc----cc---CCCCCCcc--CCccEEEEechhhhccCCCCcEEEEEEEcchhhHhhcHHHHHHHHHHHHHhc
Q 029839          113 CNFCGLDGR----CL---DADERPEL--CRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAACSAIMQVISD  183 (187)
Q Consensus       113 C~~C~~~~~----~~---~~~~~pEL--~~~tvE~~~p~~y~~r~~~pp~~vFvID~s~~~~~~g~l~~~~~sL~~~L~~  183 (187)
                      |+||+.++.    +.   +.+..+||  ++.||||++++.    ...||+|+||||++.+..+   +.+++++|...|..
T Consensus        79 CpfCnqrn~lp~qy~~iS~~~LplellpqssTiey~lskp----~~~ppvf~fvvD~~~D~e~---l~~Lkdslivslsl  151 (755)
T COG5047          79 CPFCNQRNTLPPQYRDISNANLPLELLPQSSTIEYTLSKP----VILPPVFFFVVDACCDEEE---LTALKDSLIVSLSL  151 (755)
T ss_pred             cceecCCCCCChhhcCCCcccCCccccCCCceEEEEccCC----ccCCceEEEEEEeecCHHH---HHHHHHHHHHHHhc
Confidence            999999652    22   34566788  799999999874    5689999999999997655   89999999999999


Q ss_pred             CCCC
Q 029839          184 LPVF  187 (187)
Q Consensus       184 lP~~  187 (187)
                      ||++
T Consensus       152 lppe  155 (755)
T COG5047         152 LPPE  155 (755)
T ss_pred             CCcc
Confidence            9975

>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.52  E-value=3.3e-15  Score=91.70  Aligned_cols=34  Identities=56%  Similarity=1.255  Sum_probs=24.5

Q ss_pred             CceecCCCCeEEcCceEEEeCCceEEEecCCCCC
Q 029839           87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLDG  120 (187)
Q Consensus        87 ~~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~~~  120 (187)
                      +|+||++|+||||||++|+.+|++|+|+||++.+
T Consensus         1 ~p~rC~~C~aylNp~~~~~~~~~~w~C~~C~~~N   34 (40)
T PF04810_consen    1 GPVRCRRCRAYLNPFCQFDDGGKTWICNFCGTKN   34 (40)
T ss_dssp             -S-B-TTT--BS-TTSEEETTTTEEEETTT--EE
T ss_pred             CccccCCCCCEECCcceEcCCCCEEECcCCCCcC
Confidence            4899999999999999999999999999999843

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=87.99  E-value=0.44  Score=29.42  Aligned_cols=28  Identities=21%  Similarity=0.636  Sum_probs=20.1

Q ss_pred             ceecCCCCeEEcCceEEEeCCceEEEecCCCC
Q 029839           88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLD  119 (187)
Q Consensus        88 ~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~~  119 (187)
                      ..+|.+|++-+.    ++.....+.|+.||..
T Consensus         3 ~y~C~~CG~~~~----~~~~~~~~~Cp~CG~~   30 (46)
T PRK00398          3 EYKCARCGREVE----LDEYGTGVRCPYCGYR   30 (46)
T ss_pred             EEECCCCCCEEE----ECCCCCceECCCCCCe
Confidence            468999999632    3334336999999984

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=86.50  E-value=0.45  Score=28.22  Aligned_cols=31  Identities=23%  Similarity=0.561  Sum_probs=19.6

Q ss_pred             ceecCCCCeEEc-CceEEEeCCceEEEecCCC
Q 029839           88 LVRCCCCRGYRN-PFMEFVDNGKSFVCNFCGL  118 (187)
Q Consensus        88 ~~RC~~C~ayiN-p~~~~~~~g~~w~C~~C~~  118 (187)
                      .++|.+|++-.+ +-.++...|.+.+|.-|++
T Consensus         2 ~i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~   33 (37)
T PF13719_consen    2 IITCPNCQTRFRVPDDKLPAGGRKVRCPKCGH   33 (37)
T ss_pred             EEECCCCCceEEcCHHHcccCCcEEECCCCCc
Confidence            467777777644 3333445567777777775

>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria

Probab=80.47  E-value=0.85  Score=27.74  Aligned_cols=30  Identities=20%  Similarity=0.415  Sum_probs=23.8

Q ss_pred             eecCCCCeEEcCceEEEeCCceEEEecCCCC
Q 029839           89 VRCCCCRGYRNPFMEFVDNGKSFVCNFCGLD  119 (187)
Q Consensus        89 ~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~~  119 (187)
                      -||.+|+....-+..+.. .....|+-||..
T Consensus         6 y~C~~Cg~~fe~~~~~~~-~~~~~CP~Cg~~   35 (42)
T PF09723_consen    6 YRCEECGHEFEVLQSISE-DDPVPCPECGST   35 (42)
T ss_pred             EEeCCCCCEEEEEEEcCC-CCCCcCCCCCCC
Confidence            589999988777776665 567999999983

The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	187
3eh2_A	766	Crystal Structure Of The Human Copii-Coat Protein S		2e-31
3efo_B	770	Crystal Structure Of The Mammalian Copii-Coat Prote		3e-27
3egd_B	748	Crystal Structure Of The Mammalian Copii-Coat Prote		5e-22
2nup_B	753	Crystal Structure Of The Human Sec23a24A HETERODIME		5e-22
3eh1_A	751	Crystal Structure Of The Human Copii-Coat Protein S		6e-21
1pcx_A	810	Crystal Structure Of The Copii Coat Subunit, Sec24,		1e-20
1m2v_B	926	Crystal Structure Of The Yeast Sec2324 HETERODIMER		1e-20

>pdb|3EH2|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24c Length = 766

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 72/179 (40%), Positives = 104/179 (58%), Gaps = 16/179 (8%)
Query: 23  VTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVD 82
           VT+ ++VKD GN SPRYIRC+   IPCT ++ K + +P A +++ LA   P E    VVD
Sbjct: 29  VTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVD 88
Query: 83  FGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG------------LD--GRCLDADER 128
            GESG +RC  C+ Y  PFM+F++ G+ F C FC             LD  G+ +DA +R
Sbjct: 89  HGESGPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVDAYDR 148
Query: 129 PELCRGTVEFAASREFMMRNVM--PPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLP 185
           PEL  G+ EF A+ ++   N    PP + F+IDVS +A++TG     C  +  ++  LP
Sbjct: 149 PELSLGSYEFLATVDYCKNNKFPSPPAFIFMIDVSYNAIRTGLVRLLCEELKSLLDFLP 207

>pdb|3EFO|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF SYNTAXIN 5 Length = 770

Iteration: 1
 Score =  117 bits (294), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 100/179 (55%), Gaps = 16/179 (8%)
Query: 23  VTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVD 82
           VT+  +++D GN SPR+IRC+    PCT ++ K + +P A +++  A    +E P+ +V+
Sbjct: 33  VTTDCMIQDQGNASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSNESPLYLVN 92
Query: 83  FGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG------------LD--GRCLDADER 128
            GESG VRC  C+ Y  PFM+F++ G+ + C FC             LD  GR LD  E+
Sbjct: 93  HGESGPVRCNRCKAYMCPFMQFIEGGRRYQCGFCNCVNDVPPFYFQHLDHIGRRLDHYEK 152
Query: 129 PELCRGTVEFAASREFMMRNV--MPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLP 185
           PEL  G+ E+ A+ ++  ++    PP + F+IDVS   ++ G     C  +  ++  +P
Sbjct: 153 PELSLGSYEYVATLDYCRKSKPPNPPAFIFMIDVSYSNIKNGLVKLICEELKTMLEKIP 211

>pdb|3EGD|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND BOUND To The Transport Signal Sequence Of Vesicular Stomatitis Virus Glycoprotein Length = 748

Iteration: 1
 Score =  100 bits (249), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 85/168 (50%), Gaps = 26/168 (15%)
Query: 34  NCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCC 93
           NC+P   RC+L  IP T+ LL  + +P  L++       P +D + +     S +VRC  
Sbjct: 35  NCNPELFRCTLTSIPQTQALLNKAKLPLGLLLH------PFKDLVQLPVVTSSTIVRCRS 88
Query: 94  CRGYRNPFMEFVDNGKSFVCNFCGLDGRCLDADE----------------RPELCRGTVE 137
           CR Y NPF+ F+D  + + CN C    R  D  E                RPE+   T+E
Sbjct: 89  CRTYINPFVSFLDQ-RRWKCNLCY---RVNDVPEEFLYNPLTRVYGEPHRRPEVQNATIE 144
Query: 138 FAASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLP 185
           F A  E+M+R   PPVY F+ DVS +AV+TG   + C +++  +  LP
Sbjct: 145 FMAPSEYMLRPPQPPVYLFVFDVSHNAVETGYLNSVCQSLLDNLDLLP 192

>pdb|2NUP|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER, Complexed With The Snare Protein Sec22b Length = 753

Iteration: 1
 Score =  100 bits (248), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 85/168 (50%), Gaps = 26/168 (15%)
Query: 34  NCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCC 93
           NC+P   RC+L  IP T+ LL  + +P  L++       P +D + +     S +VRC  
Sbjct: 40  NCNPELFRCTLTSIPQTQALLNKAKLPLGLLLH------PFKDLVQLPVVTSSTIVRCRS 93
Query: 94  CRGYRNPFMEFVDNGKSFVCNFCGLDGRCLDADE----------------RPELCRGTVE 137
           CR Y NPF+ F+D  + + CN C    R  D  E                RPE+   T+E
Sbjct: 94  CRTYINPFVSFLDQ-RRWKCNLCY---RVNDVPEEFLYNPLTRVYGEPHRRPEVQNATIE 149
Query: 138 FAASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLP 185
           F A  E+M+R   PPVY F+ DVS +AV+TG   + C +++  +  LP
Sbjct: 150 FMAPSEYMLRPPQPPVYLFVFDVSHNAVETGYLNSVCQSLLDNLDLLP 197

>pdb|3EH1|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24b Length = 751

Iteration: 1
 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 20/165 (12%)
Query: 34  NCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCC 93
           NCSP   RC+L  IP T+ LL  + +P  L++     P      +PV+    + +VRC  
Sbjct: 37  NCSPDSFRCTLTNIPQTQALLNKAKLPLGLLLH----PFRDLTQLPVI--TSNTIVRCRS 90
Query: 94  CRGYRNPFMEFVDNGKSFVCNFC-------------GLDGRCLDADERPELCRGTVEFAA 140
           CR Y NPF+ F+D  + + CN C              L     +  +RPE+   TVEF A
Sbjct: 91  CRTYINPFVSFIDQ-RRWKCNLCYRVNDVPEEFMYNPLTRSYGEPHKRPEVQNSTVEFIA 149
Query: 141 SREFMMRNVMPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLP 185
           S ++M+R   P VY F++DVS +AV+ G     C ++++ +  LP
Sbjct: 150 SSDYMLRPPQPAVYLFVLDVSHNAVEAGYLTILCQSLLENLDKLP 194

>pdb|1PCX|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24, Complexed With A Peptide From The Snare Protein Bet1 Length = 810

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 87/168 (51%), Gaps = 16/168 (9%)
Query: 31  DTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGL-V 89
           +  N SP YIR +LN +P   +LLK S +P  L+++         DP P+    E GL V
Sbjct: 57  ELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPL---NEDGLIV 113
Query: 90  RCCCCRGYRNPFMEFVDNGKSFVCNFCGLDGRC-LDADE-----------RPELCRGTVE 137
           RC  CR Y NPF+ F++ G+ + CNFC L     +  D+           R E+    +E
Sbjct: 114 RCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPMQMDQSDPNDPKSRYDRNEIKCAVME 173
Query: 138 FAASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLP 185
           + A +E+ +R   P  Y FLIDVS  ++++G  A   + ++Q +  +P
Sbjct: 174 YMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIP 221

>pdb|1M2V|B Chain B, Crystal Structure Of The Yeast Sec2324 HETERODIMER Length = 926

Iteration: 1
 Score = 95.5 bits (236), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 87/168 (51%), Gaps = 16/168 (9%)
Query: 31  DTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGL-V 89
           +  N SP YIR +LN +P   +LLK S +P  L+++         DP P+    E GL V
Sbjct: 173 ELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPL---NEDGLIV 229
Query: 90  RCCCCRGYRNPFMEFVDNGKSFVCNFCGLDGRC-LDADE-----------RPELCRGTVE 137
           RC  CR Y NPF+ F++ G+ + CNFC L     +  D+           R E+    +E
Sbjct: 230 RCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPMQMDQSDPNDPKSRYDRNEIKCAVME 289
Query: 138 FAASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLP 185
           + A +E+ +R   P  Y FLIDVS  ++++G  A   + ++Q +  +P
Sbjct: 290 YMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIP 337

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	187
3eh2_A	766	Protein transport protein SEC24C; copii-coat prote	5e-46
3efo_B	770	SEC24 related gene family, member D; copii, coat p	7e-46
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-42
1pcx_A	810	Protein transport protein SEC24; 2.50A {Saccharomy	1e-39
3eh1_A	751	Protein transport protein SEC24B; copii coat prote	3e-36
2nut_A	769	Protein transport protein SEC23A; human copii SEC2	5e-32
1m2o_A	768	SEC23, protein transport protein SEC23, SEC23P; zi	2e-28

>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Length = 766

 Score =  159 bits (403), Expect = 5e-46
 Identities = 71/183 (38%), Positives = 104/183 (56%), Gaps = 16/183 (8%)

Query: 19  PPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPI 78
            PP VT+ ++VKD GN SPRYIRC+   IPCT ++ K + +P A +++ LA   P E   
Sbjct: 25  VPPLVTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASP 84

Query: 79  PVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL--------------DGRCLD 124
            VVD GESG +RC  C+ Y  PFM+F++ G+ F C FC                 G+ +D
Sbjct: 85  YVVDHGESGPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVD 144

Query: 125 ADERPELCRGTVEFAASREFM--MRNVMPPVYFFLIDVSTDAVQTGATAAACSAIMQVIS 182
           A +RPEL  G+ EF A+ ++    +   PP + F+IDVS +A++TG     C  +  ++ 
Sbjct: 145 AYDRPELSLGSYEFLATVDYCKNNKFPSPPAFIFMIDVSYNAIRTGLVRLLCEELKSLLD 204

Query: 183 DLP 185
            LP
Sbjct: 205 FLP 207

>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Length = 770

 Score =  159 bits (403), Expect = 7e-46
 Identities = 63/194 (32%), Positives = 104/194 (53%), Gaps = 18/194 (9%)

Query: 8   LYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQV 67
           +Y T     +  PP VT+  +++D GN SPR+IRC+    PCT ++ K + +P A +++ 
Sbjct: 20  VYATNTRGQI--PPLVTTDCMIQDQGNASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKP 77

Query: 68  LALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL--------- 118
            A    +E P+ +V+ GESG VRC  C+ Y  PFM+F++ G+ + C FC           
Sbjct: 78  FATIPSNESPLYLVNHGESGPVRCNRCKAYMCPFMQFIEGGRRYQCGFCNCVNDVPPFYF 137

Query: 119 -----DGRCLDADERPELCRGTVEFAASREFMMRNV--MPPVYFFLIDVSTDAVQTGATA 171
                 GR LD  E+PEL  G+ E+ A+ ++  ++    PP + F+IDVS   ++ G   
Sbjct: 138 QHLDHIGRRLDHYEKPELSLGSYEYVATLDYCRKSKPPNPPAFIFMIDVSYSNIKNGLVK 197

Query: 172 AACSAIMQVISDLP 185
             C  +  ++  +P
Sbjct: 198 LICEELKTMLEKIP 211

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score =  151 bits (381), Expect = 1e-42
 Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 14/178 (7%)

Query: 20  PPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIP 79
             P     +  +  N SP YIR +LN +P   +LLK S +P  L+++         DP P
Sbjct: 162 VIPPERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPP 221

Query: 80  VVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG------------LDGRCLDADE 127
           + + G   +VRC  CR Y NPF+ F++ G+ + CNFC                      +
Sbjct: 222 LNEDGL--IVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPMQMDQSDPNDPKSRYD 279

Query: 128 RPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLP 185
           R E+    +E+ A +E+ +R   P  Y FLIDVS  ++++G  A   + ++Q +  +P
Sbjct: 280 RNEIKCAVMEYMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIP 337

>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Length = 810

 Score =  142 bits (357), Expect = 1e-39
 Identities = 56/187 (29%), Positives = 91/187 (48%), Gaps = 17/187 (9%)

Query: 14  GKSVKPPP---PVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLAL 70
             ++ PPP   P     +  +  N SP YIR +LN +P   +LLK S +P  L+++    
Sbjct: 37  DLTLPPPPLVIPPERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQH 96

Query: 71  PDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG------------L 118
                DP P+ + G   +VRC  CR Y NPF+ F++ G+ + CNFC              
Sbjct: 97  LYDDIDPPPLNEDGL--IVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPMQMDQSD 154

Query: 119 DGRCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAACSAIM 178
                   +R E+    +E+ A +E+ +R   P  Y FLIDVS  ++++G  A   + ++
Sbjct: 155 PNDPKSRYDRNEIKCAVMEYMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLL 214

Query: 179 QVISDLP 185
           Q +  +P
Sbjct: 215 QNLDSIP 221

>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Length = 751

 Score =  132 bits (332), Expect = 3e-36
 Identities = 58/180 (32%), Positives = 87/180 (48%), Gaps = 20/180 (11%)

Query: 19  PPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPI 78
              PV +        NCSP   RC+L  IP T+ LL  + +P  L++     P      +
Sbjct: 22  VWAPVPNLNADLKKLNCSPDSFRCTLTNIPQTQALLNKAKLPLGLLLH----PFRDLTQL 77

Query: 79  PVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFC-------------GLDGRCLDA 125
           PV+      +VRC  CR Y NPF+ F+D  + + CN C              L     + 
Sbjct: 78  PVITSNT--IVRCRSCRTYINPFVSFID-QRRWKCNLCYRVNDVPEEFMYNPLTRSYGEP 134

Query: 126 DERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLP 185
            +RPE+   TVEF AS ++M+R   P VY F++DVS +AV+ G     C ++++ +  LP
Sbjct: 135 HKRPEVQNSTVEFIASSDYMLRPPQPAVYLFVLDVSHNAVEAGYLTILCQSLLENLDKLP 194

>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Length = 769

 Score =  120 bits (301), Expect = 5e-32
 Identities = 32/174 (18%), Positives = 58/174 (33%), Gaps = 25/174 (14%)

Query: 23  VTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVD 82
             + Y+     N     +R S N  P +        +P A +   L          P + 
Sbjct: 4   GMTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLK-------ERPDLP 56

Query: 83  FGESGLVRCCC--CRGYRNPFMEFVDNGKSFVCNFCGL-------DGRCLDADERPELCR 133
             +   V C    CR   NP  +     K + CNFC              + ++  EL  
Sbjct: 57  PIQYEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLP 116

Query: 134 --GTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLP 185
              ++E+   R       MP ++ +++D     ++     A   ++   +S LP
Sbjct: 117 QFSSIEYVVLRGPQ----MPLIFLYVVDTC---MEDEDLQALKESMQMSLSLLP 163

>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Length = 768

 Score =  109 bits (273), Expect = 2e-28
 Identities = 28/161 (17%), Positives = 58/161 (36%), Gaps = 19/161 (11%)

Query: 32  TGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRC 91
             N     +R + N  P T +    + +P   +   L       D + V  +    +   
Sbjct: 4   ETNEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLK----EYDELNVAPYNP-VVCSG 58

Query: 92  CCCRGYRNPFMEFVDNGKSFVCNFCGLD-------GRCLDADERPELCRGTVEFAASREF 144
             C+   NP+        S+ C  C                +   EL   T+E+  ++  
Sbjct: 59  PHCKSILNPYCVIDPRNSSWSCPICNSRNHLPPQYTNLSQENMPLELQSTTIEYITNKPV 118

Query: 145 MMRNVMPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLP 185
                +PP++FF++D++++     +      +I+  +S LP
Sbjct: 119 T----VPPIFFFVVDLTSETENLDSL---KESIITSLSLLP 152

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	187
3efo_B	770	SEC24 related gene family, member D; copii, coat p	100.0
3eh2_A	766	Protein transport protein SEC24C; copii-coat prote	100.0
1pcx_A	810	Protein transport protein SEC24; 2.50A {Saccharomy	100.0
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	100.0
3eh1_A	751	Protein transport protein SEC24B; copii coat prote	100.0
2nut_A	769	Protein transport protein SEC23A; human copii SEC2	100.0
1m2o_A	768	SEC23, protein transport protein SEC23, SEC23P; zi	100.0
2yrc_A	59	Protein transport protein SEC23A; zinc binding, co	99.42
2a20_A	62	Regulating synaptic membrane exocytosis protein 2;	86.52
1pft_A	50	TFIIB, PFTFIIBN; N-terminal domain, transcription	82.88
1gh9_A	71	8.3 kDa protein (gene MTH1184); beta+alpha complex	81.8
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	80.3

>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B

Probab=100.00  E-value=6.2e-52  Score=391.17  Aligned_cols=179  Identities=35%  Similarity=0.750  Sum_probs=166.4

Q ss_pred             eEEeccCCCCcCCCCCCcceeEecCCCCCCCCeeEeeccccCCCHHHhhhcCCceEEEEecCCCCCCCCCCCceeccCCC
Q 029839            7 ILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGES   86 (187)
Q Consensus         7 ~~~~t~~~~~~~~pp~~~~~~~~~d~gn~~p~~iR~T~~~~P~~~~~~~~~~iPlgi~v~Pf~~~~~~e~~ip~v~~~~~   86 (187)
                      ..|.|..++  +.||++++.|++.|+|||+|+|||+|||+||.+++++++++||||++||||++..+.|.++|+|++++.
T Consensus        19 ~~~~t~~~~--~~pp~~~~~~~~~d~gn~~p~~~R~T~n~iP~t~~l~~~~~lPlg~~i~Pl~~~~~~e~p~pvv~~~~~   96 (770)
T 3efo_B           19 QVYATNTRG--QIPPLVTTDCMIQDQGNASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSNESPLYLVNHGES   96 (770)
T ss_dssp             SEEETTSSS--CCCCCTTSCCEEECSSSCCTTTEEESBSEEESSHHHHHHHCCCCEEEECTTCCCCTTSCCCCEECCTTT
T ss_pred             CCccCCCCC--CCCCCCCCceeeeecCCCCCCeEEeecccCCCCHHHHHhCCCCeEEEEEcCCCCCcccCCCCcccCCCC
Confidence            478898655  459999999999999999999999999999999999999999999999999998877777999999889


Q ss_pred             CceecCCCCeEEcCceEEEeCCceEEEecCCCC--------------CcccCCCCCCccCCccEEEEechhhh--ccCCC
Q 029839           87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLD--------------GRCLDADERPELCRGTVEFAASREFM--MRNVM  150 (187)
Q Consensus        87 ~~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~~--------------~~~~~~~~~pEL~~~tvE~~~p~~y~--~r~~~  150 (187)
                      +|+||++|||||||||+|+++|++|+||||+..              |.|.|.++||||++|+|||++|.||+  .++++
T Consensus        97 ~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~~~tvEf~ap~eY~~~~~~p~  176 (770)
T 3efo_B           97 GPVRCNRCKAYMCPFMQFIEGGRRYQCGFCNCVNDVPPFYFQHLDHIGRRLDHYEKPELSLGSYEYVATLDYCRKSKPPN  176 (770)
T ss_dssp             CSCBCTTTCCBSCTTCEEEGGGTEEECTTTCCEEECCGGGCCCCCSSSCTTTGGGSHHHHCSEEEEECCGGGSGGGSCCC
T ss_pred             CCCccCCCCCCcCCceEEecCCCEEEeccccccCCCchHhhccccccccccccccCcccccCceeeecCHHHhccCCCCC
Confidence            999999999999999999999999999999982              34557789999999999999999998  47999


Q ss_pred             CcEEEEEEEcchhhHhhcHHHHHHHHHHHHHhcCCCC
Q 029839          151 PPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLPVF  187 (187)
Q Consensus       151 pp~~vFvID~s~~~~~~g~l~~~~~sL~~~L~~lP~~  187 (187)
                      ||+|+||||+|..++++|++++++++|+++|+.||++
T Consensus       177 pp~y~FvIDvs~~av~sg~l~~~~~sl~~~L~~lP~~  213 (770)
T 3efo_B          177 PPAFIFMIDVSYSNIKNGLVKLICEELKTMLEKIPKE  213 (770)
T ss_dssp             CCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCC
T ss_pred             CcEEEEEEEcchhhccchHHHHHHHHHHHHHHhCCcc
Confidence            9999999999999999999999999999999999963

>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}

Probab=100.00  E-value=8.5e-52  Score=390.06  Aligned_cols=179  Identities=40%  Similarity=0.753  Sum_probs=167.2

Q ss_pred             eEEeccCCCCcCCCCCCcceeEecCCCCCCCCeeEeeccccCCCHHHhhhcCCceEEEEecCCCCCCCCCCCceeccCCC
Q 029839            7 ILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGES   86 (187)
Q Consensus         7 ~~~~t~~~~~~~~pp~~~~~~~~~d~gn~~p~~iR~T~~~~P~~~~~~~~~~iPlgi~v~Pf~~~~~~e~~ip~v~~~~~   86 (187)
                      -.|.|+.++  +.||+++++|++.|+|||+|+|||+|||+||.+++++++++||||++||||++..+.|.++|+|++++.
T Consensus        15 ~~f~t~~~~--~~pP~~~t~~~~~d~gn~~p~~~R~T~~~iP~t~~l~~~~~lPlg~~i~P~~~~~~~e~~~pvv~~~~~   92 (766)
T 3eh2_A           15 EPFVTGVRG--QVPPLVTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVDHGES   92 (766)
T ss_dssp             SEEETTSTT--CCCCCTTSCCEEECSSSCCTTTEEESBSEEESSHHHHHHHTCCEEEEECTTCCCCTTSCCCEEECCGGG
T ss_pred             CCcccCCCC--CCCCCCCCceEeeccCCCCCceEEcccccCCCCHHHHHhCCCCeEEEEecCCcCcccCCCCCeecCCCC
Confidence            478899765  469999999999999999999999999999999999999999999999999998877778999998889


Q ss_pred             CceecCCCCeEEcCceEEEeCCceEEEecCCCC--------------CcccCCCCCCccCCccEEEEechhhhc--cCCC
Q 029839           87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLD--------------GRCLDADERPELCRGTVEFAASREFMM--RNVM  150 (187)
Q Consensus        87 ~~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~~--------------~~~~~~~~~pEL~~~tvE~~~p~~y~~--r~~~  150 (187)
                      +|+||++|||||||||+|+++|++|+||||+..              +.|.|.++||||+.|+|||++|.||+.  ++++
T Consensus        93 ~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~~~~vef~a~~eY~~~~~~p~  172 (766)
T 3eh2_A           93 GPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVDAYDRPELSLGSYEFLATVDYCKNNKFPS  172 (766)
T ss_dssp             CCCBCTTTCCBCCTTCEEEGGGTEEECTTTCCEEECCTTTTGGGGGSSSCCCCSCCHHHHCSEEEEECCGGGSGGGSCCC
T ss_pred             CCCccCCCCCEeCCceEEecCCCEEEeccccccCCCCHHHhccccccccccccccCcccccCceeeecCHhhccCCCCCC
Confidence            999999999999999999999999999999982              345678999999999999999999985  7899


Q ss_pred             CcEEEEEEEcchhhHhhcHHHHHHHHHHHHHhcCCCC
Q 029839          151 PPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLPVF  187 (187)
Q Consensus       151 pp~~vFvID~s~~~~~~g~l~~~~~sL~~~L~~lP~~  187 (187)
                      ||+|+||||+|..++++|++++++++|+++|+.||++
T Consensus       173 pp~y~FvIDvs~~av~sg~l~~~~~si~~~L~~lp~~  209 (766)
T 3eh2_A          173 PPAFIFMIDVSYNAIRTGLVRLLCEELKSLLDFLPRE  209 (766)
T ss_dssp             CCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCC
T ss_pred             CCEEEEEEECchhhccchHHHHHHHHHHHHHHhCCcc
Confidence            9999999999999999999999999999999999963

>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A

Probab=100.00  E-value=1.8e-46  Score=355.70  Aligned_cols=161  Identities=32%  Similarity=0.626  Sum_probs=149.7

Q ss_pred             cceeEecCCCCCCCCeeEeeccccCCCHHHhhhcCCceEEEEecCCCCCCCCCCCceeccCCCCceecCCCCeEEcCceE
Q 029839           24 TSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFME  103 (187)
Q Consensus        24 ~~~~~~~d~gn~~p~~iR~T~~~~P~~~~~~~~~~iPlgi~v~Pf~~~~~~e~~ip~v~~~~~~~~RC~~C~ayiNp~~~  103 (187)
                      ++.|+..|+|||+|+|||+|||+||.+++++++++||||++||||++..+.++++|+++.  .+|+||++|+|||||||+
T Consensus        50 ~~~~~~~d~~n~~p~~vR~T~n~iP~t~~~~~~~~lPlg~vv~P~~~~~~~~~~~pvv~~--~~pvRC~~CrayiNPf~~  127 (810)
T 1pcx_A           50 ERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNED--GLIVRCRRCRSYMNPFVT  127 (810)
T ss_dssp             GGSSSCSGGGSCCTTTEEESBSSEESSHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECS--CCCCBCTTTCCBCCTTCE
T ss_pred             CCccccccCCCCCCCceeeecccCCCCHHHHHhCCCCeEEEEecCCccccCCCCCCccCC--CCCCccCCccCEecCceE
Confidence            488999999999999999999999999999999999999999999998766667999873  459999999999999999


Q ss_pred             EEeCCceEEEecCCCC------------CcccCCCCCCccCCccEEEEechhhhccCCCCcEEEEEEEcchhhHhhcHHH
Q 029839          104 FVDNGKSFVCNFCGLD------------GRCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATA  171 (187)
Q Consensus       104 ~~~~g~~w~C~~C~~~------------~~~~~~~~~pEL~~~tvE~~~p~~y~~r~~~pp~~vFvID~s~~~~~~g~l~  171 (187)
                      |+.+|++|+||||+..            +.+.|..+||||+++||||++|++|+.|++.||+|+||||+|..++++|+++
T Consensus       128 ~~~~g~~W~C~~C~~~N~~P~~y~~~~~~~~~d~~~RpEL~~~tvEy~~p~~y~~~~p~pp~yvFvIDvs~~av~~g~l~  207 (810)
T 1pcx_A          128 FIEQGRRWRCNFCRLANDVPMQMDQSDPNDPKSRYDRNEIKCAVMEYMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLA  207 (810)
T ss_dssp             EETTTTEEECTTTCCEEECCGGGGC-----CCCGGGSHHHHCSEEEEECCGGGCSSCCCCCEEEEEEECSHHHHHHTHHH
T ss_pred             EeCCCCEEEccCCCCcCCCchhhccccccCccccccCccccCceEEEEcCchhccCCCCCcEEEEEEECChHHHhhhHHH
Confidence            9999999999999983            3356788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCC
Q 029839          172 AACSAIMQVISDLPV  186 (187)
Q Consensus       172 ~~~~sL~~~L~~lP~  186 (187)
                      +++++|+++|+.||+
T Consensus       208 ~~~~si~~~L~~Lp~  222 (810)
T 1pcx_A          208 TTINTLLQNLDSIPN  222 (810)
T ss_dssp             HHHHHHHHHTTTSCC
T ss_pred             HHHHHHHHHHHhCCC
Confidence            999999999999996

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1

Probab=100.00  E-value=3e-46  Score=357.37  Aligned_cols=161  Identities=32%  Similarity=0.626  Sum_probs=150.4

Q ss_pred             cceeEecCCCCCCCCeeEeeccccCCCHHHhhhcCCceEEEEecCCCCCCCCCCCceeccCCCCceecCCCCeEEcCceE
Q 029839           24 TSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFME  103 (187)
Q Consensus        24 ~~~~~~~d~gn~~p~~iR~T~~~~P~~~~~~~~~~iPlgi~v~Pf~~~~~~e~~ip~v~~~~~~~~RC~~C~ayiNp~~~  103 (187)
                      ++.|+..|+|||+|+|||+|||+||.+++++++++||||++|+||++..+.++++|+++.  .+|+||++|+|||||||+
T Consensus       166 ~~~~~~~d~gn~~p~~vR~T~n~iP~t~~l~~~~~lPlg~vv~P~a~~~~~~~~vpvv~~--~~pvRC~rCrAYiNPf~~  243 (926)
T 1m2v_B          166 ERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNED--GLIVRCRRCRSYMNPFVT  243 (926)
T ss_dssp             GGSSSCSSSSSCCTTTEEESBSSEESBHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECS--CCCCBCSSSCCBCCTTCE
T ss_pred             CcccccccCCCCCCCceecccccCCCCHHHHHhCCCCeEEEEecCCCcccCCCCCCccCC--CCCCccCCccCEecCceE
Confidence            488999999999999999999999999999999999999999999998766667999873  459999999999999999


Q ss_pred             EEeCCceEEEecCCCC------------CcccCCCCCCccCCccEEEEechhhhccCCCCcEEEEEEEcchhhHhhcHHH
Q 029839          104 FVDNGKSFVCNFCGLD------------GRCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATA  171 (187)
Q Consensus       104 ~~~~g~~w~C~~C~~~------------~~~~~~~~~pEL~~~tvE~~~p~~y~~r~~~pp~~vFvID~s~~~~~~g~l~  171 (187)
                      |+.+|++|+||||+..            +.+.|..+||||+++||||++|++|+.|++.||+||||||+|..++++|+++
T Consensus       244 ~~~~g~~W~CnfC~~~N~~P~~Y~~~~~~~~~d~~~RpEL~~~tvEyi~p~ey~~r~p~ppvyvFvIDvS~~av~~g~l~  323 (926)
T 1m2v_B          244 FIEQGRRWRCNFCRLANDVPMQMDQSDPNDPKSRYDRNEIKCAVMEYMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLA  323 (926)
T ss_dssp             EETTTTEEECTTTCCEEECCGGGTTTSTTCGGGGGGSHHHHCSEEEEECCGGGCSSCCCCCBEEEEEECSHHHHHSCHHH
T ss_pred             EeCCCCEEEccCCCCCCCCchhhccccccCccccccCccccCceEEEEcChhhccCCCCCcEEEEEEECCHHHHhhhHHH
Confidence            9999999999999983            3455788899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCC
Q 029839          172 AACSAIMQVISDLPV  186 (187)
Q Consensus       172 ~~~~sL~~~L~~lP~  186 (187)
                      +++++|+++|+.||+
T Consensus       324 ~l~~sI~~~L~~LP~  338 (926)
T 1m2v_B          324 TTINTLLQNLDSIPN  338 (926)
T ss_dssp             HHHHHHHHTTTTSCC
T ss_pred             HHHHHHHHHHHhCCC
Confidence            999999999999996

>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B

Probab=100.00  E-value=5.6e-45  Score=342.97  Aligned_cols=150  Identities=35%  Similarity=0.698  Sum_probs=137.3

Q ss_pred             CCCCCCCCeeEeeccccCCCHHHhhhcCCceEEEEecCCCCCCCCCCCceeccCCCCceecCCCCeEEcCceEEEeCCce
Q 029839           31 DTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKS  110 (187)
Q Consensus        31 d~gn~~p~~iR~T~~~~P~~~~~~~~~~iPlgi~v~Pf~~~~~~e~~ip~v~~~~~~~~RC~~C~ayiNp~~~~~~~g~~  110 (187)
                      ++|||+|+|||+|||+||.+++++++++||||++||||++..    ++|+++  ..+|+||++|||||||||+| .+|++
T Consensus        34 ~~~n~~p~~~R~T~n~iP~t~~~~~~~~lPlg~~i~Pl~~~~----~~P~v~--~~~p~RC~rCrayiNPf~~f-~~~~~  106 (751)
T 3eh1_A           34 KKLNCSPDSFRCTLTNIPQTQALLNKAKLPLGLLLHPFRDLT----QLPVIT--SNTIVRCRSCRTYINPFVSF-IDQRR  106 (751)
T ss_dssp             HHHSCCTTTEEESBSSEESSHHHHHHHCCCCEEEECTTCCCS----CCCEEC--CSCCCBCTTTCCBCCTTCEE-SSSSE
T ss_pred             cccCCCCCeEEeecccCCCCHHHHHhCCCCeEEEEecCCcCC----CCCccC--CCCCCcccCccCEeCCceEE-ecCCE
Confidence            489999999999999999999999999999999999999864    389887  35799999999999999999 45789


Q ss_pred             EEEecCCCCC-------------cccCCCCCCccCCccEEEEechhhhccCCCCcEEEEEEEcchhhHhhcHHHHHHHHH
Q 029839          111 FVCNFCGLDG-------------RCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAACSAI  177 (187)
Q Consensus       111 w~C~~C~~~~-------------~~~~~~~~pEL~~~tvE~~~p~~y~~r~~~pp~~vFvID~s~~~~~~g~l~~~~~sL  177 (187)
                      |+||||+..|             .+.|.++||||++|||||++|++|+.|+++||+|+||||+|..++++|++++++++|
T Consensus       107 w~Cn~C~~~N~~P~~y~~~~~~~~~~d~~~rpEL~~~tvEy~~p~~y~~r~p~pp~yvFvIDvs~~a~~~g~l~~~~~sl  186 (751)
T 3eh1_A          107 WKCNLCYRVNDVPEEFMYNPLTRSYGEPHKRPEVQNSTVEFIASSDYMLRPPQPAVYLFVLDVSHNAVEAGYLTILCQSL  186 (751)
T ss_dssp             EECTTTCCEEECCGGGC---------CGGGSHHHHCSEEEEEECGGGCSSSCCCCEEEEEEECSHHHHHHTHHHHHHHHH
T ss_pred             EEcccccCCCCCCHHHhcccccccccCcccCchhccceEEEEcChhhhcCCCCCcEEEEEEEccHhhhhhhHHHHHHHHH
Confidence            9999999832             124678999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCC
Q 029839          178 MQVISDLPVF  187 (187)
Q Consensus       178 ~~~L~~lP~~  187 (187)
                      +++|+.||++
T Consensus       187 ~~~L~~lp~~  196 (751)
T 3eh1_A          187 LENLDKLPGD  196 (751)
T ss_dssp             HHHTTTSSCC
T ss_pred             HHHHHhcCCC
Confidence            9999999974

>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A

Probab=100.00  E-value=5e-39  Score=303.38  Aligned_cols=149  Identities=21%  Similarity=0.328  Sum_probs=133.5

Q ss_pred             ceeEecCCCCCCCCeeEeeccccCCCHHHhhhcCCceEEEEecCCCCCCCCCCCceeccCCCCceecCC--CCeEEcCce
Q 029839           25 SKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCC--CRGYRNPFM  102 (187)
Q Consensus        25 ~~~~~~d~gn~~p~~iR~T~~~~P~~~~~~~~~~iPlgi~v~Pf~~~~~~e~~ip~v~~~~~~~~RC~~--C~ayiNp~~  102 (187)
                      ++|...|++|++|+|||+|||+||.+++++++++||||++||||++..    ++|+++   .+|+||++  |+|||||||
T Consensus         6 ~~~~~~~~~n~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~----~~p~v~---~~pvRC~~~~CrayiNPf~   78 (769)
T 2nut_A            6 TTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERP----DLPPIQ---YEPVLCSRTTCRAVLNPLC   78 (769)
T ss_dssp             -CHHHHHHHHHHHHSEEESBSSBCSSHHHHTTCSSCCEEEECTTCCCS----CCCCBC---SCCCBCSSTTCCCBCCTTS
T ss_pred             cchhhhhcccCCCCcccceeccCCCChHHHhcccCCeEEEEeeCCCCC----CCCcCC---CCCCcCCCCCCCeEECCce
Confidence            557777889999999999999999999999999999999999999753    388888   57999999  999999999


Q ss_pred             EEEeCCceEEEecCCCCCc----c---cCCCCCCcc--CCccEEEEechhhhccCCCCcEEEEEEEcchhhHhhcHHHHH
Q 029839          103 EFVDNGKSFVCNFCGLDGR----C---LDADERPEL--CRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAA  173 (187)
Q Consensus       103 ~~~~~g~~w~C~~C~~~~~----~---~~~~~~pEL--~~~tvE~~~p~~y~~r~~~pp~~vFvID~s~~~~~~g~l~~~  173 (187)
                      +|+.+|++|+||||+..|.    +   ...+.+|||  +++||||++|++|    +.||+|+||||+|..+++   ++++
T Consensus        79 ~~~~~~~~W~C~~C~~~N~~P~~Y~~~~~~~~~pEL~p~~~tvEy~~~~~~----p~pp~~vFvIDvS~~a~~---l~~l  151 (769)
T 2nut_A           79 QVDYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEYVVLRGP----QMPLIFLYVVDTCMEDED---LQAL  151 (769)
T ss_dssp             EEETTTTEEECSSSCCEEECCGGGTTCBTTBCCGGGSGGGSSEEEEECSSC----CCCCEEEEEEECCSCHHH---HHHH
T ss_pred             EEeCCCCEEEccCCCCCCCCChHHccCCcccCChhhcCCCCcEEEEccCCC----CCCCEEEEEEECCccHHH---HHHH
Confidence            9999999999999999542    2   124678999  8999999999986    789999999999999887   8999


Q ss_pred             HHHHHHHHhcCCCC
Q 029839          174 CSAIMQVISDLPVF  187 (187)
Q Consensus       174 ~~sL~~~L~~lP~~  187 (187)
                      +++|+++|+.||++
T Consensus       152 ~~si~~~L~~Lp~~  165 (769)
T 2nut_A          152 KESMQMSLSLLPPT  165 (769)
T ss_dssp             HHHHHHHHTTSCTT
T ss_pred             HHHHHHHHHhCCCC
Confidence            99999999999974

>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*

Probab=100.00  E-value=2e-37  Score=292.48  Aligned_cols=140  Identities=21%  Similarity=0.388  Sum_probs=126.6

Q ss_pred             CCCCCeeEeeccccCCCHHHhhhcCCceEEEEecCCCCCCCCCCCceeccCCCCceecCC--CCeEEcCceEEEeCCceE
Q 029839           34 NCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCC--CRGYRNPFMEFVDNGKSF  111 (187)
Q Consensus        34 n~~p~~iR~T~~~~P~~~~~~~~~~iPlgi~v~Pf~~~~~~e~~ip~v~~~~~~~~RC~~--C~ayiNp~~~~~~~g~~w  111 (187)
                      |++|+|||+|||+||.+++++++++||||++||||++..    ++|+++   .+|+||++  |+|||||||+|+.+|++|
T Consensus         6 ~~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~----~~p~v~---~~pvRC~~~~CrayiNPf~~~~~~~~~W   78 (768)
T 1m2o_A            6 NEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYD----ELNVAP---YNPVVCSGPHCKSILNPYCVIDPRNSSW   78 (768)
T ss_dssp             HHHHHSEEESBSEEESSHHHHHHTCSCSEEEECTTCCCT----TCCEEC---SCCCBCCSTTTCCBCCTTSCEETTTTEE
T ss_pred             ccCcCceEeeeccCCCCHHHHhcCCCCeEEEEEeCCCCC----CCCcCC---CCCCccCCCCCCeEECCceEEeCCCCEE
Confidence            789999999999999999999999999999999999753    389987   57999999  999999999999999999


Q ss_pred             EEecCCCCCc----cc---CCCCCCccCCccEEEEechhhhccCCCCcEEEEEEEcchhhHhhcHHHHHHHHHHHHHhcC
Q 029839          112 VCNFCGLDGR----CL---DADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDL  184 (187)
Q Consensus       112 ~C~~C~~~~~----~~---~~~~~pEL~~~tvE~~~p~~y~~r~~~pp~~vFvID~s~~~~~~g~l~~~~~sL~~~L~~l  184 (187)
                      +||||+..|.    +.   ..+.+|||+++||||++|.    +++.||+|+||||+|..+++   +++++++|+++|+.|
T Consensus        79 ~C~~C~~~N~~P~~y~~~~~~~~~pEL~~~tvEy~~p~----~~~~pp~~vFvIDvs~~~~~---l~~l~~sl~~~L~~L  151 (768)
T 1m2o_A           79 SCPICNSRNHLPPQYTNLSQENMPLELQSTTIEYITNK----PVTVPPIFFFVVDLTSETEN---LDSLKESIITSLSLL  151 (768)
T ss_dssp             CCTTTCCCCBCCGGGCC---CCCCGGGTCSEEEEECSC----CCCSCCEEEEEEECCSCHHH---HHHHHHHHHHHHHTS
T ss_pred             EcccCCCCCCCChHHccCCcccCChhhccCCEEEECCC----CCCCCCEEEEEEECCcCHHH---HHHHHHHHHHHHHhC
Confidence            9999999654    21   2467899999999999997    57899999999999999876   899999999999999


Q ss_pred             CCC
Q 029839          185 PVF  187 (187)
Q Consensus       185 P~~  187 (187)
                      |++
T Consensus       152 p~~  154 (768)
T 1m2o_A          152 PPN  154 (768)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            974

>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A

Probab=99.42  E-value=4.1e-14  Score=92.83  Aligned_cols=36  Identities=31%  Similarity=0.593  Sum_probs=33.3

Q ss_pred             CCCceecCC--CCeEEcCceEEEeCCceEEEecCCCCC
Q 029839           85 ESGLVRCCC--CRGYRNPFMEFVDNGKSFVCNFCGLDG  120 (187)
Q Consensus        85 ~~~~~RC~~--C~ayiNp~~~~~~~g~~w~C~~C~~~~  120 (187)
                      +++|+||++  |+||||||++|+.+|++|+|+||+..+
T Consensus         6 ~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N   43 (59)
T 2yrc_A            6 SGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRN   43 (59)
T ss_dssp             CCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEE
T ss_pred             CCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcC
Confidence            478999999  999999999999999999999999844

>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C

Probab=86.52  E-value=0.15  Score=32.78  Aligned_cols=27  Identities=30%  Similarity=0.572  Sum_probs=19.4

Q ss_pred             ceecCCCCeEEcCceEEEeCCceEEEecCCC
Q 029839           88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL  118 (187)
Q Consensus        88 ~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~  118 (187)
                      ..-|.+|++++.-    ..+.-+|+|++|..
T Consensus        33 ~r~CaRCGg~v~l----r~~k~~WvC~lC~k   59 (62)
T 2a20_A           33 TKFCARCGGRVSL----RSNKVMWVCNLCRK   59 (62)
T ss_dssp             CEECTTSEEEEES----STTCEEEEEHHHHH
T ss_pred             CeeecccCCEeee----cCCeEEEEehhhhh
Confidence            4567788887654    33567899999953

>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1

Probab=82.88  E-value=2.4  Score=25.52  Aligned_cols=29  Identities=21%  Similarity=0.457  Sum_probs=22.7

Q ss_pred             CceecCCCCeEEcCceEEEeCCceEEEecCCC
Q 029839           87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL  118 (187)
Q Consensus        87 ~~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~  118 (187)
                      ....|..|++-   -..++.....++|..||.
T Consensus         4 ~~~~CP~C~~~---~l~~d~~~gelvC~~CG~   32 (50)
T 1pft_A            4 KQKVCPACESA---ELIYDPERGEIVCAKCGY   32 (50)
T ss_dssp             SCCSCTTTSCC---CEEEETTTTEEEESSSCC
T ss_pred             ccEeCcCCCCc---ceEEcCCCCeEECcccCC
Confidence            35689999982   245777777899999998

>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1

Probab=81.80  E-value=0.69  Score=30.68  Aligned_cols=26  Identities=27%  Similarity=0.547  Sum_probs=19.5

Q ss_pred             CceecCCCCeEEcCceEEEeCCceEEEecCCC
Q 029839           87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL  118 (187)
Q Consensus        87 ~~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~  118 (187)
                      -++||. |+++    .-.+.+.+.-.|+ ||.
T Consensus         3 ~vv~C~-C~~~----~~~~~~~kT~~C~-CG~   28 (71)
T 1gh9_A            3 IIFRCD-CGRA----LYSREGAKTRKCV-CGR   28 (71)
T ss_dssp             EEEEET-TSCC----EEEETTCSEEEET-TTE
T ss_pred             EEEECC-CCCE----EEEcCCCcEEECC-CCC
Confidence            478999 9998    2345566666898 998

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*

Probab=80.30  E-value=0.46  Score=31.09  Aligned_cols=32  Identities=31%  Similarity=0.677  Sum_probs=28.9

Q ss_pred             CCceecCCCCeEEcCceEEEeCCceEEEecCCC
Q 029839           86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL  118 (187)
Q Consensus        86 ~~~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~  118 (187)
                      ..+..|.+|++--.|..+-...|. ..||.|+.
T Consensus         7 ~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl   38 (66)
T 4gat_A            7 NGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGL   38 (66)
T ss_dssp             SSSCCCTTTCCCCCSSCEEETTTE-EECHHHHH
T ss_pred             CCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHH
Confidence            457999999999999999888887 99999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	187
d1pd0a5	85	g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccha	7e-21
d1pd0a2	177	b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast	6e-14
d2qtva5	75	g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Sacchar	4e-12
d1pd0a3	252	c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Sacchar	4e-09
d2qtva3	271	c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Sacchar	2e-06

>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-finger domain of Sec23/24
family: Zn-finger domain of Sec23/24
domain: Sec24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.9 bits (197), Expect = 7e-21
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 14/85 (16%)

Query: 75  EDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG------------LDGRC 122
            DP P+ + G   +VRC  CR Y NPF+ F++ G+ + CNFC                  
Sbjct: 2   IDPPPLNEDG--LIVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPMQMDQSDPNDP 59

Query: 123 LDADERPELCRGTVEFAASREFMMR 147
               +R E+    +E+ A +E+ +R
Sbjct: 60  KSRYDRNEIKCAVMEYMAPKEYTLR 84

>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 177

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: beta-sandwich domain of Sec23/24
family: beta-sandwich domain of Sec23/24
domain: Sec24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.4 bits (157), Expect = 6e-14
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 19 PPPPVT----SKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPS 74
          PPPP+        +  +  N SP YIR +LN +P   +LLK S +P  L+++        
Sbjct: 25 PPPPLVIPPERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDC 84

Query: 75 EDPIPVV 81
           + +   
Sbjct: 85 METVMRA 91

>d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 75

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-finger domain of Sec23/24
family: Zn-finger domain of Sec23/24
domain: Sec23
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.1 bits (138), Expect = 4e-12
 Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 9/64 (14%)

Query: 89  VRCCC--CRGYRNPFMEFVDNGKSFVCNFCGLDGRC-------LDADERPELCRGTVEFA 139
           V C    C+   NP+        S+ C  C                +   EL   T+E+ 
Sbjct: 10  VVCSGPHCKSILNPYCVIDPRNSSWSCPICNSRNHLPPQYTNLSQENMPLELQSTTIEYI 69

Query: 140 ASRE 143
            ++ 
Sbjct: 70  TNKP 73

>d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Trunk domain of Sec23/24
domain: Sec24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.9 bits (124), Expect = 4e-09
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 150 MPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLP 185
            P  Y FLIDVS  ++++G  A   + ++Q +  +P
Sbjct: 2   PPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIP 37

>d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 271

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Trunk domain of Sec23/24
domain: Sec23
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.6 bits (105), Expect = 2e-06
 Identities = 9/36 (25%), Positives = 22/36 (61%), Gaps = 3/36 (8%)

Query: 150 MPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLP 185
           +PP++FF++D++++     +      +I+  +S LP
Sbjct: 1   VPPIFFFVVDLTSETENLDSL---KESIITSLSLLP 33

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	187
d1pd0a5	85	Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T	99.91
d2qtva5	75	Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T	99.82
d1pd0a2	177	Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T	99.39
d2qtva2	176	Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T	98.26
d1y0ja1	39	Erythroid transcription factor GATA-1 {Mouse (Mus	88.48
d1s24a_	56	Two-iron rubredoxin {Pseudomonas oleovorans [TaxId	80.85

>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-finger domain of Sec23/24
family: Zn-finger domain of Sec23/24
domain: Sec24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=4.5e-26  Score=159.27  Aligned_cols=70  Identities=36%  Similarity=0.813  Sum_probs=61.0

Q ss_pred             CCCceeccCCCCceecCCCCeEEcCceEEEeCCceEEEecCCCC------------CcccCCCCCCccCCccEEEEechh
Q 029839           76 DPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLD------------GRCLDADERPELCRGTVEFAASRE  143 (187)
Q Consensus        76 ~~ip~v~~~~~~~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~~------------~~~~~~~~~pEL~~~tvE~~~p~~  143 (187)
                      ++||+++  ...|+||++|+|||||||+|+.+|++|+|+||++.            +.+.+..+||||++|||||++|++
T Consensus         3 ~pvPv~~--~~~i~RC~~C~ayiNP~~~~~~~g~~w~C~~C~~~N~~p~~y~~~~~~~~~~~~~rPEL~~~tvEy~ap~~   80 (85)
T d1pd0a5           3 DPPPLNE--DGLIVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPMQMDQSDPNDPKSRYDRNEIKCAVMEYMAPKE   80 (85)
T ss_dssp             SCCCBCC--SCCCCBCSSSCCBCCTTCEEETTTTEEECTTTCCEEECCGGGGC-----CCCGGGSHHHHCSEEEEECCGG
T ss_pred             CCCcccC--CCCCccccCCcCEECCceEEeCCCCEEECCCCCcccCCCHHHhccccCCccccccCcccccceEEEECChh
Confidence            3689887  45799999999999999999999999999999982            234567789999999999999999


Q ss_pred             hhcc
Q 029839          144 FMMR  147 (187)
Q Consensus       144 y~~r  147 (187)
                      |+.|
T Consensus        81 Y~~r   84 (85)
T d1pd0a5          81 YTLR   84 (85)
T ss_dssp             GCSS
T ss_pred             hhcc
Confidence            9876

>d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-finger domain of Sec23/24
family: Zn-finger domain of Sec23/24
domain: Sec23
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=1.7e-21  Score=132.51  Aligned_cols=64  Identities=20%  Similarity=0.407  Sum_probs=54.4

Q ss_pred             CceeccCCCCceecCC--CCeEEcCceEEEeCCceEEEecCCCCCc-------ccCCCCCCccCCccEEEEechhh
Q 029839           78 IPVVDFGESGLVRCCC--CRGYRNPFMEFVDNGKSFVCNFCGLDGR-------CLDADERPELCRGTVEFAASREF  144 (187)
Q Consensus        78 ip~v~~~~~~~~RC~~--C~ayiNp~~~~~~~g~~w~C~~C~~~~~-------~~~~~~~pEL~~~tvE~~~p~~y  144 (187)
                      ++++.   ++|+||++  |+||||||++|+.+|++|+|+||+..+.       ..+.+.+|||+++||||++|+++
T Consensus         2 ~~~~~---~~PvrC~r~~C~ayiNP~~~~~~~~~~W~C~~C~~~N~lP~~Y~~~~~~~~ppEL~~~tVEyi~p~~~   74 (75)
T d2qtva5           2 LNVAP---YNPVVCSGPHCKSILNPYCVIDPRNSSWSCPICNSRNHLPPQYTNLSQENMPLELQSTTIEYITNKPV   74 (75)
T ss_dssp             CCEES---SCCCBCCSTTTCCBCCTTCCEETTTTEEECTTTCCEEECCTTTSSCCTTSCCHHHHCSEEEEEEEEEC
T ss_pred             CCccC---CCCceeCCCCCCcEECCceEEecCCCEEEecccCccCcCChhhccCCccCcCccccCccEEEecCCCC
Confidence            56665   78999986  9999999999999999999999999432       13567789999999999999753

>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: beta-sandwich domain of Sec23/24
family: beta-sandwich domain of Sec23/24
domain: Sec24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.39  E-value=4.3e-14  Score=109.82  Aligned_cols=62  Identities=26%  Similarity=0.365  Sum_probs=51.3

Q ss_pred             eEecCCCCCCCCeeEeeccccCCCHHHhhhcCCceEEEEecCCCCCCCCCCCceeccCCCCceecCCCCe
Q 029839           27 YIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRG   96 (187)
Q Consensus        27 ~~~~d~gn~~p~~iR~T~~~~P~~~~~~~~~~iPlgi~v~Pf~~~~~~e~~ip~v~~~~~~~~RC~~C~a   96 (187)
                      ++..|+|||+|+|||+|+|++|.+.+++++++||||++++||+.+....+.|        -=+||++.-.
T Consensus        37 ~~~~d~~n~~p~~~r~T~~~iP~~~~ll~~~~lP~~~~i~Pf~~l~~a~~~v--------mRvR~S~Gl~   98 (177)
T d1pd0a2          37 LVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDCMETV--------MRARGSTGLR   98 (177)
T ss_dssp             SSCSGGGSCCTTTEEESBSSEESSHHHHHHHCCCCEEEECSCCSSSTEEEEE--------EEEEECTTEE
T ss_pred             ecccccCCCCccceeeeeccCCCCHHHHHHcCCCcEEEeccccchhhhhhee--------EEEecCCCeE
Confidence            5567999999999999999999999999999999999999999987543221        2377775543

>d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: beta-sandwich domain of Sec23/24
family: beta-sandwich domain of Sec23/24
domain: Sec23
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.26  E-value=1.9e-07  Score=71.32  Aligned_cols=39  Identities=21%  Similarity=0.192  Sum_probs=35.6

Q ss_pred             CCeeEeeccccCCCHHHhhhcCCceEEEEecCCCCCCCC
Q 029839           37 PRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSE   75 (187)
Q Consensus        37 p~~iR~T~~~~P~~~~~~~~~~iPlgi~v~Pf~~~~~~e   75 (187)
                      -+.+|+|||+||.++..+.++.||+|++|+||++..+.+
T Consensus         8 ~dgvR~swn~~p~s~~e~~~~vvP~~~~ytplker~d~~   46 (176)
T d2qtva2           8 INGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYDDEE   46 (176)
T ss_dssp             HHSEEESBSEEESSHHHHHHTCSCEEEEECTTCCCTCTT
T ss_pred             ccCcEEEeeccCCChHHhhceeeeeeEEeccCccccCCC
Confidence            368999999999999999999999999999999976644

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.48  E-value=0.049  Score=30.70  Aligned_cols=30  Identities=30%  Similarity=0.758  Sum_probs=25.8

Q ss_pred             ceecCCCCeEEcCceEEEeCCceEEEecCCC
Q 029839           88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL  118 (187)
Q Consensus        88 ~~RC~~C~ayiNp~~~~~~~g~~w~C~~C~~  118 (187)
                      ..+|.+|++---|..+-...|+ -.||.||.
T Consensus         2 ~r~C~~Cgtt~Tp~WR~gp~G~-~LCNACGl   31 (39)
T d1y0ja1           2 ARECVNCGATATPLWRRDRTGH-YLCNACGL   31 (39)
T ss_dssp             CCCCSSSCCCCCSCCEECTTSC-EECSSHHH
T ss_pred             cCCCCCCCCCCCcccccCCCCC-EeeHHhHH
Confidence            4689999999999998888885 69999985

>d1s24a_ g.41.5.1 (A:) Two-iron rubredoxin {Pseudomonas oleovorans [TaxId: 301]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Two-iron rubredoxin
species: Pseudomonas oleovorans [TaxId: 301]

Probab=80.85  E-value=0.12  Score=31.30  Aligned_cols=16  Identities=31%  Similarity=0.688  Sum_probs=9.0

Q ss_pred             EEeCCceEEEecCCCC
Q 029839          104 FVDNGKSFVCNFCGLD  119 (187)
Q Consensus       104 ~~~~g~~w~C~~C~~~  119 (187)
                      |+.--..|+|+.|+..
T Consensus        31 F~~LP~dw~CP~C~a~   46 (56)
T d1s24a_          31 FEDIPDDWCCPDCGAT   46 (56)
T ss_dssp             GGGCCTTCCCSSSCCC
T ss_pred             hhhCCCCCCCcCCCCc
Confidence            3333345777777763