Citrus Sinensis ID: 029854

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180------
Protein Sequence
MNVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE
Secondary Structure (PSIPRED)
ccccccccccccEEEEEEEEEEcccEEEEEEEEcccccccccccccEEEcccEEEEEEEcccHHHcccHHHHHHHHHHHcccccEEEEEEccccccccccHHHHHHHHHcccEEEEcccccccccHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEccccEEEEEEEEEEccEEEEEEEEEEccHHHcccccHHHHccccEEEEEEEcccHHHHHcHHHHHHHHHHHHccccEEEEEEccccccccccHHHHcccccccEEEEEEEHHHcEcccHHHHHHHHHHHccccccEEEcccEccccccccHHHHHHHHHHHHHHHHHHcccccccHcc
Coil and Loop (DISEMBL)
mnvsvwgkatigvevhpldfftncgkirfycwdtagqekfgglrdgyyihgqCAIIMFDVTArltyknvptwhrdlcrvcenipivlcgnkvdvknrqvKAKQVTFHRKKNLQYYEISAksnynfekPFLYLARKlagdpnlhfvespalappevQIDLAAQQQHEAELAAaasqplpdddddafe
Flexible Loop (DISEMBL)
mnvsvwgkatigvevhpldfftnCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPivlcgnkvdvknrqvkakqvtfhrkknlqyYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAaasqplpdddddAFE
Low Complexity Region (SEG)
MNVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDlaaqqqheaelaaaaSQPLPDDDDDAFE
Disordered region (IsUnstruct)
***SVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVE****************************************
Disordered Region (DISOPRED)
*NV*VWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG************************************************
Disordered Region (DISEMBL)
MNVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE
Disordered Region (DISPRO)
**VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQ*****AA***************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	186	2.2.26 [Sep-21-2011]
P54766	209	GTP-binding nuclear prote	N/A	no	0.951	0.846	0.994	1e-103
P54765	209	GTP-binding nuclear prote	N/A	no	0.951	0.846	0.988	1e-102
Q8H156	221	GTP-binding nuclear prote	yes	no	0.951	0.800	0.988	1e-102
P41918	221	GTP-binding nuclear prote	N/A	no	0.951	0.800	0.983	1e-102
P38548	221	GTP-binding nuclear prote	N/A	no	0.951	0.800	0.949	1e-98
P38547	221	GTP-binding nuclear prote	N/A	no	0.951	0.800	0.954	3e-98
P41919	221	GTP-binding nuclear prote	N/A	no	0.951	0.800	0.949	8e-98
P38546	221	GTP-binding nuclear prote	N/A	no	0.951	0.800	0.949	9e-98
P41916	221	GTP-binding nuclear prote	yes	no	0.951	0.800	0.937	3e-97
P41917	221	GTP-binding nuclear prote	yes	no	0.951	0.800	0.960	5e-92

>sp|P54766|RAN1B_LOTJA GTP-binding nuclear protein Ran1B (Fragment) OS=Lotus japonicus GN=RAN1B PE=2 SV=1

 Score =  372 bits (956), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 176/177 (99%), Positives = 177/177 (100%)

Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV
Sbjct: 33  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 92

Query: 70  PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 129
           PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF
Sbjct: 93  PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 152

Query: 130 LYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE 186
           LYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAF+
Sbjct: 153 LYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFD 209

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.
Lotus japonicus (taxid: 34305)

>sp|P54765|RAN1A_LOTJA GTP-binding nuclear protein Ran1A (Fragment) OS=Lotus japonicus GN=RAN1A PE=2 SV=1

 Score =  370 bits (951), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 175/177 (98%), Positives = 176/177 (99%)

Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV
Sbjct: 33  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 92

Query: 70  PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 129
           PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF
Sbjct: 93  PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 152

Query: 130 LYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE 186
           LYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELA AASQPLPDDDDDAF+
Sbjct: 153 LYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAQAASQPLPDDDDDAFD 209

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Lotus japonicus (taxid: 34305)

>sp|Q8H156|RAN3_ARATH GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana GN=RAN3 PE=1 SV=2

 Score =  370 bits (951), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 175/177 (98%), Positives = 175/177 (98%)

Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV
Sbjct: 45  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 104

Query: 70  PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 129
           PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF
Sbjct: 105 PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164

Query: 130 LYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE 186
           LYLARKLAGD NLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDD FE
Sbjct: 165 LYLARKLAGDANLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDTFE 221

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Arabidopsis thaliana (taxid: 3702)

>sp|P41918|RANA1_TOBAC GTP-binding nuclear protein Ran-A1 OS=Nicotiana tabacum GN=RAN-A1 PE=2 SV=1

 Score =  370 bits (950), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 174/177 (98%), Positives = 176/177 (99%)

Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV
Sbjct: 45  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 104

Query: 70  PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 129
           PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF
Sbjct: 105 PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164

Query: 130 LYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE 186
           LYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDD+ F+
Sbjct: 165 LYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDETFD 221

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Nicotiana tabacum (taxid: 4097)

>sp|P38548|RAN_VICFA GTP-binding nuclear protein Ran/TC4 OS=Vicia faba PE=2 SV=1

 Score =  358 bits (919), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 168/177 (94%), Positives = 172/177 (97%)

Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV
Sbjct: 45  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 104

Query: 70  PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 129
           PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF
Sbjct: 105 PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164

Query: 130 LYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE 186
           LYLARKLAGD NLHFVESPALAPPEVQID+A QQ+HE E+  AA+QPLPDDDDDAFE
Sbjct: 165 LYLARKLAGDANLHFVESPALAPPEVQIDIALQQRHENEILEAANQPLPDDDDDAFE 221

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Vicia faba (taxid: 3906)

>sp|P38547|RAN2_SOLLC GTP-binding nuclear protein Ran2 OS=Solanum lycopersicum GN=RAN2 PE=2 SV=1

 Score =  357 bits (916), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 169/177 (95%), Positives = 171/177 (96%)

Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV
Sbjct: 45  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 104

Query: 70  PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 129
           PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF
Sbjct: 105 PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164

Query: 130 LYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE 186
           LYLARKLAGD NLHFVESPALAPPEVQIDLAAQ  HE EL AA +QPLPDDDD+AFE
Sbjct: 165 LYLARKLAGDGNLHFVESPALAPPEVQIDLAAQALHEQELQAALNQPLPDDDDEAFE 221

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Solanum lycopersicum (taxid: 4081)

>sp|P41919|RANB1_TOBAC GTP-binding nuclear protein Ran-B1 OS=Nicotiana tabacum GN=RAN-B1 PE=2 SV=1

 Score =  355 bits (912), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 168/177 (94%), Positives = 170/177 (96%)

Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV
Sbjct: 45  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 104

Query: 70  PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 129
           PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF
Sbjct: 105 PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164

Query: 130 LYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE 186
           LYLARKLAGD NLHFVESPALAPPEVQIDLAAQQ HE EL  AA+  LPDDDD+AFE
Sbjct: 165 LYLARKLAGDANLHFVESPALAPPEVQIDLAAQQLHEQELLQAAAHALPDDDDEAFE 221

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Nicotiana tabacum (taxid: 4097)

>sp|P38546|RAN1_SOLLC GTP-binding nuclear protein Ran1 OS=Solanum lycopersicum GN=RAN1 PE=2 SV=1

 Score =  355 bits (911), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 168/177 (94%), Positives = 170/177 (96%)

Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV
Sbjct: 45  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 104

Query: 70  PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 129
           PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF
Sbjct: 105 PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164

Query: 130 LYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE 186
           LYLARKLAGD NLHFVESPALAPPEV IDLAAQ  HE EL  AA+QPLPDDDD+AFE
Sbjct: 165 LYLARKLAGDGNLHFVESPALAPPEVHIDLAAQALHEEELQQAANQPLPDDDDEAFE 221

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Solanum lycopersicum (taxid: 4081)

>sp|P41916|RAN1_ARATH GTP-binding nuclear protein Ran-1 OS=Arabidopsis thaliana GN=RAN1 PE=1 SV=1

 Score =  353 bits (907), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 166/177 (93%), Positives = 171/177 (96%)

Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV
Sbjct: 45  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 104

Query: 70  PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 129
           PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF
Sbjct: 105 PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164

Query: 130 LYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE 186
           LYLARKLAGD NLHFVE+PALAPPEV ID+A QQ++EAEL  AA+QPLPDDDDD FE
Sbjct: 165 LYLARKLAGDQNLHFVETPALAPPEVHIDIADQQKNEAELLQAAAQPLPDDDDDIFE 221

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Arabidopsis thaliana (taxid: 3702)

>sp|P41917|RAN2_ARATH GTP-binding nuclear protein Ran-2 OS=Arabidopsis thaliana GN=RAN2 PE=1 SV=3

 Score =  336 bits (861), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 170/177 (96%), Positives = 175/177 (98%)

Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV
Sbjct: 45  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 104

Query: 70  PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 129
           PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF
Sbjct: 105 PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164

Query: 130 LYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE 186
           LYLARKLAGD NLHFVESPALAPPEV +D+AAQQQ+EA+LAAAA+QPLPDDDDDAFE
Sbjct: 165 LYLARKLAGDQNLHFVESPALAPPEVHLDIAAQQQNEADLAAAAAQPLPDDDDDAFE 221

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
20149262	221	GTP-binding protein [Helianthus annuus]	0.951	0.800	0.994	1e-102
297738907	260	unnamed protein product [Vitis vinifera]	0.951	0.680	0.994	1e-101
296081995	254	unnamed protein product [Vitis vinifera]	0.951	0.696	0.994	1e-101
1710008	209	RecName: Full=GTP-binding nuclear protei	0.951	0.846	0.994	1e-101
388518503	221	unknown [Lotus japonicus]	0.951	0.800	0.994	1e-101
225430202	221	PREDICTED: GTP-binding nuclear protein R	0.951	0.800	0.994	1e-101
344189995	221	Ran3D-1 [Dimocarpus longan] gi|344189997	0.951	0.800	0.983	1e-101
388519813	221	unknown [Lotus japonicus]	0.951	0.800	0.988	1e-101
1710007	209	RecName: Full=GTP-binding nuclear protei	0.951	0.846	0.988	1e-101
15240474	221	GTP-binding nuclear protein Ran-3 [Arabi	0.951	0.800	0.988	1e-100

>gi|20149262|gb|AAM12880.1|AF495716_1 GTP-binding protein [Helianthus annuus]

 Score =  374 bits (960), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 176/177 (99%), Positives = 177/177 (100%)

Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV
Sbjct: 45  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 104

Query: 70  PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 129
           PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF
Sbjct: 105 PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164

Query: 130 LYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE 186
           LYLARKLAGDPNLHFVESPALAPPEVQID+AAQQQHEAELAAAASQPLPDDDDDAFE
Sbjct: 165 LYLARKLAGDPNLHFVESPALAPPEVQIDMAAQQQHEAELAAAASQPLPDDDDDAFE 221

Source: Helianthus annuus

Species: Helianthus annuus

Genus: Helianthus

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738907|emb|CBI28152.3| unnamed protein product [Vitis vinifera]

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/177 (99%), Positives = 176/177 (99%)

Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV
Sbjct: 84  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 143

Query: 70  PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 129
           PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF
Sbjct: 144 PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 203

Query: 130 LYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE 186
           LYLARKLAGDPNLHFVESPALAPPEV IDLAAQQQHEAELAAAASQPLPDDDDDAFE
Sbjct: 204 LYLARKLAGDPNLHFVESPALAPPEVHIDLAAQQQHEAELAAAASQPLPDDDDDAFE 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081995|emb|CBI21000.3| unnamed protein product [Vitis vinifera]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/177 (99%), Positives = 176/177 (99%)

Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV
Sbjct: 78  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 137

Query: 70  PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 129
           PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF
Sbjct: 138 PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 197

Query: 130 LYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE 186
           LYLARKLAGDPNLHFVESPALAPPEV IDLAAQQQHEAELAAAASQPLPDDDDDAFE
Sbjct: 198 LYLARKLAGDPNLHFVESPALAPPEVHIDLAAQQQHEAELAAAASQPLPDDDDDAFE 254

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1710008|sp|P54766.1|RAN1B_LOTJA RecName: Full=GTP-binding nuclear protein Ran1B gi|1370205|emb|CAA98188.1| RAN1B [Lotus japonicus]

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/177 (99%), Positives = 177/177 (100%)

Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV
Sbjct: 33  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 92

Query: 70  PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 129
           PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF
Sbjct: 93  PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 152

Query: 130 LYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE 186
           LYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAF+
Sbjct: 153 LYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFD 209

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518503|gb|AFK47313.1| unknown [Lotus japonicus]

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/177 (99%), Positives = 177/177 (100%)

Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV
Sbjct: 45  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 104

Query: 70  PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 129
           PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF
Sbjct: 105 PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164

Query: 130 LYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE 186
           LYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAF+
Sbjct: 165 LYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFD 221

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430202|ref|XP_002284967.1| PREDICTED: GTP-binding nuclear protein Ran-3-like [Vitis vinifera] gi|225445410|ref|XP_002285018.1| PREDICTED: GTP-binding nuclear protein Ran-3-like [Vitis vinifera]

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/177 (99%), Positives = 176/177 (99%)

Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV
Sbjct: 45  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 104

Query: 70  PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 129
           PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF
Sbjct: 105 PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164

Query: 130 LYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE 186
           LYLARKLAGDPNLHFVESPALAPPEV IDLAAQQQHEAELAAAASQPLPDDDDDAFE
Sbjct: 165 LYLARKLAGDPNLHFVESPALAPPEVHIDLAAQQQHEAELAAAASQPLPDDDDDAFE 221

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|344189995|gb|AEM97824.1| Ran3D-1 [Dimocarpus longan] gi|344189997|gb|AEM97825.1| Ran3D-2 [Dimocarpus longan]

 Score =  371 bits (952), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 174/177 (98%), Positives = 176/177 (99%)

Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV
Sbjct: 45  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 104

Query: 70  PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 129
           PTWHRDLCRVCENIPIVLCGNKVDV+NRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF
Sbjct: 105 PTWHRDLCRVCENIPIVLCGNKVDVRNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164

Query: 130 LYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE 186
           LYLARKLAGDPN+HFVESPALAPPEVQIDLAAQQQHEAEL AAASQPLPDDDDDAFE
Sbjct: 165 LYLARKLAGDPNIHFVESPALAPPEVQIDLAAQQQHEAELQAAASQPLPDDDDDAFE 221

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519813|gb|AFK47968.1| unknown [Lotus japonicus]

 Score =  371 bits (952), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 175/177 (98%), Positives = 176/177 (99%)

Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV
Sbjct: 45  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 104

Query: 70  PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 129
           PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF
Sbjct: 105 PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164

Query: 130 LYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE 186
           LYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELA AASQPLPDDDDDAF+
Sbjct: 165 LYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAQAASQPLPDDDDDAFD 221

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1710007|sp|P54765.1|RAN1A_LOTJA RecName: Full=GTP-binding nuclear protein Ran1A gi|1370203|emb|CAA98187.1| RAN1A [Lotus japonicus]

 Score =  370 bits (951), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 175/177 (98%), Positives = 176/177 (99%)

Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV
Sbjct: 33  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 92

Query: 70  PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 129
           PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF
Sbjct: 93  PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 152

Query: 130 LYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE 186
           LYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELA AASQPLPDDDDDAF+
Sbjct: 153 LYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAQAASQPLPDDDDDAFD 209

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240474|ref|NP_200330.1| GTP-binding nuclear protein Ran-3 [Arabidopsis thaliana] gi|76789666|sp|Q8H156.2|RAN3_ARATH RecName: Full=GTP-binding nuclear protein Ran-3; AltName: Full=Ras-related nuclear protein 3 gi|2149051|gb|AAB58478.1| small Ras-like GTP-binding protein [Arabidopsis thaliana] gi|9758116|dbj|BAB08588.1| small Ras-like GTP-binding protein [Arabidopsis thaliana] gi|14596017|gb|AAK68736.1| small Ras-like GTP-binding protein [Arabidopsis thaliana] gi|15215578|gb|AAK91334.1| AT5g55190/MCO15_14 [Arabidopsis thaliana] gi|21435991|gb|AAM51573.1| AT5g55190/MCO15_14 [Arabidopsis thaliana] gi|332009215|gb|AED96598.1| GTP-binding nuclear protein Ran-3 [Arabidopsis thaliana]

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 175/177 (98%), Positives = 175/177 (98%)

Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV
Sbjct: 45  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 104

Query: 70  PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 129
           PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF
Sbjct: 105 PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164

Query: 130 LYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE 186
           LYLARKLAGD NLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDD FE
Sbjct: 165 LYLARKLAGDANLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDTFE 221

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
TAIR|locus:2161600	221	RAN3 "RAN GTPase 3" [Arabidops	0.951	0.800	0.903	3.7e-87
TAIR|locus:2147715	221	RAN2 "RAS-related GTP-binding	0.951	0.800	0.892	1.6e-86
TAIR|locus:2147700	221	RAN-1 "RAS-related nuclear pro	0.951	0.800	0.887	1.4e-85
WB|WBGene00004302	215	ran-1 [Caenorhabditis elegans	0.940	0.813	0.771	2.9e-71
UNIPROTKB|O17915	215	ran-1 "GTP-binding nuclear pro	0.940	0.813	0.771	2.9e-71
SGD|S000004284	219	GSP1 "Ran GTPase" [Saccharomyc	0.935	0.794	0.758	9.9e-71
SGD|S000005711	220	GSP2 "GTP binding protein (mam	0.935	0.790	0.758	9.9e-71
CGD|CAL0005360	214	GSP1 [Candida albicans (taxid:	0.935	0.813	0.741	1.1e-69
UNIPROTKB|Q59P43	214	GSP1 "RAN-like GTP binding pro	0.935	0.813	0.741	1.1e-69
ASPGD|ASPL0000033427	215	ran [Emericella nidulans (taxi	0.935	0.809	0.735	1.8e-69

TAIR|locus:2161600 RAN3 "RAN GTPase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 871 (311.7 bits), Expect = 3.7e-87, P = 3.7e-87
 Identities = 160/177 (90%), Positives = 160/177 (90%)

Query:    10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
             TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV
Sbjct:    45 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 104

Query:    70 PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 129
             PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF
Sbjct:   105 PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164

Query:   130 LYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDDAFE 186
             LYLARKLAGD NLHFVESPALAPPEVQID               SQPLPDDDDD FE
Sbjct:   165 LYLARKLAGDANLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDTFE 221

GO:0003924 "GTPase activity" evidence=IEA;ISS

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2147715 RAN2 "RAS-related GTP-binding nuclear protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 865 (309.6 bits), Expect = 1.6e-86, P = 1.6e-86
 Identities = 158/177 (89%), Positives = 160/177 (90%)

Query:    10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
             TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV
Sbjct:    45 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 104

Query:    70 PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 129
             PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF
Sbjct:   105 PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164

Query:   130 LYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDDAFE 186
             LYLARKLAGD NLHFVESPALAPPEV +D               +QPLPDDDDDAFE
Sbjct:   165 LYLARKLAGDQNLHFVESPALAPPEVHLDIAAQQQNEADLAAAAAQPLPDDDDDAFE 221

GO:0003924 "GTPase activity" evidence=IEA;ISS

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006606 "protein import into nucleus" evidence=TAS

TAIR|locus:2147700 RAN-1 "RAS-related nuclear protein-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 856 (306.4 bits), Expect = 1.4e-85, P = 1.4e-85
 Identities = 157/177 (88%), Positives = 159/177 (89%)

Query:    10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
             TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV
Sbjct:    45 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 104

Query:    70 PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 129
             PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF
Sbjct:   105 PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164

Query:   130 LYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDDAFE 186
             LYLARKLAGD NLHFVE+PALAPPEV ID               +QPLPDDDDD FE
Sbjct:   165 LYLARKLAGDQNLHFVETPALAPPEVHIDIADQQKNEAELLQAAAQPLPDDDDDIFE 221

GO:0003924 "GTPase activity" evidence=IEA;ISS

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005618 "cell wall" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0048046 "apoplast" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006606 "protein import into nucleus" evidence=TAS

WB|WBGene00004302 ran-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
 Identities = 135/175 (77%), Positives = 144/175 (82%)

Query:     9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
             AT+GVEVHPL F TN G+IRF  WDTAGQEKFGGLRDGYYI GQCAIIMFDVTAR+TYKN
Sbjct:    40 ATLGVEVHPLVFHTNRGQIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKN 99

Query:    69 VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128
             VP WHRDL RVCENIPIVLCGNKVDVK+R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKP
Sbjct:   100 VPNWHRDLARVCENIPIVLCGNKVDVKDRKVKAKTITFHRKKNLQYYDISAKSNYNFEKP 159

Query:   129 FLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 183
             FL+LARKL GDPNL FV  PALAPPEVQ+D                  LPDDDDD
Sbjct:   160 FLWLARKLLGDPNLEFVAMPALAPPEVQMDPAMIAEYEKDLDNAAKADLPDDDDD 214

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0046785 "microtubule polymerization" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

UNIPROTKB|O17915 ran-1 "GTP-binding nuclear protein ran-1" [Caenorhabditis elegans (taxid:6239)]

 Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
 Identities = 135/175 (77%), Positives = 144/175 (82%)

Query:     9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
             AT+GVEVHPL F TN G+IRF  WDTAGQEKFGGLRDGYYI GQCAIIMFDVTAR+TYKN
Sbjct:    40 ATLGVEVHPLVFHTNRGQIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKN 99

Query:    69 VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128
             VP WHRDL RVCENIPIVLCGNKVDVK+R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKP
Sbjct:   100 VPNWHRDLARVCENIPIVLCGNKVDVKDRKVKAKTITFHRKKNLQYYDISAKSNYNFEKP 159

Query:   129 FLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 183
             FL+LARKL GDPNL FV  PALAPPEVQ+D                  LPDDDDD
Sbjct:   160 FLWLARKLLGDPNLEFVAMPALAPPEVQMDPAMIAEYEKDLDNAAKADLPDDDDD 214

GO:0005515 "protein binding" evidence=IPI

SGD|S000004284 GSP1 "Ran GTPase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
 Identities = 132/174 (75%), Positives = 146/174 (83%)

Query:     9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
             ATIGVEVHPL F+TN G+I+F  WDTAGQEKFGGLRDGYYI+ QCAIIMFDVT+R+TYKN
Sbjct:    43 ATIGVEVHPLSFYTNFGEIKFDVWDTAGQEKFGGLRDGYYINAQCAIIMFDVTSRITYKN 102

Query:    69 VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128
             VP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKP
Sbjct:   103 VPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKP 162

Query:   129 FLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDD 182
             FL+LARKLAG+P L FV SPALAPPEVQ+D               + PLPD+DD
Sbjct:   163 FLWLARKLAGNPQLEFVASPALAPPEVQVDEQLMQQYQQEMEQATALPLPDEDD 216

GO:0005737 "cytoplasm" evidence=TAS

GO:0006913 "nucleocytoplasmic transport" evidence=IEA;TAS

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005525 "GTP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000467 "exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

GO:0031938 "regulation of chromatin silencing at telomere" evidence=IMP

GO:0007165 "signal transduction" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA;IGI;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006997 "nucleus organization" evidence=IGI;ISS

GO:0016021 "integral to membrane" evidence=ISM

SGD|S000005711 GSP2 "GTP binding protein (mammalian Ranp homolog)" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
 Identities = 132/174 (75%), Positives = 146/174 (83%)

Query:     9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
             ATIGVEVHPL F+TN G+I+F  WDTAGQEKFGGLRDGYYI+ QCAIIMFDVT+R+TYKN
Sbjct:    44 ATIGVEVHPLSFYTNFGEIKFDVWDTAGQEKFGGLRDGYYINAQCAIIMFDVTSRITYKN 103

Query:    69 VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128
             VP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKP
Sbjct:   104 VPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKP 163

Query:   129 FLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDD 182
             FL+LARKLAG+P L FV SPALAPPEVQ+D               + PLPD+DD
Sbjct:   164 FLWLARKLAGNPQLEFVASPALAPPEVQVDEQLMHQYQQEMDQATALPLPDEDD 217

GO:0005634 "nucleus" evidence=IEA;IGI;ISS

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA;IGI;ISS

GO:0006997 "nucleus organization" evidence=IGI;ISS

GO:0016021 "integral to membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

CGD|CAL0005360 GSP1 [Candida albicans (taxid:5476)]

 Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
 Identities = 129/174 (74%), Positives = 144/174 (82%)

Query:     9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
             AT+GVEVHPL F TN G+++F  WDTAGQEKFGGLRDGYYI+GQC IIMFDVT+R+TYKN
Sbjct:    38 ATLGVEVHPLGFHTNFGELKFDVWDTAGQEKFGGLRDGYYINGQCGIIMFDVTSRITYKN 97

Query:    69 VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128
             VP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKP
Sbjct:    98 VPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKP 157

Query:   129 FLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDD 182
             FL+LARKL G+P L FV SPALAPPEVQ+D               + PLPD+DD
Sbjct:   158 FLWLARKLVGNPQLEFVASPALAPPEVQVDADLMQKYQQEMEQATALPLPDEDD 211

GO:0005525 "GTP binding" evidence=IDA

GO:0003924 "GTPase activity" evidence=IGI;ISS

GO:0006913 "nucleocytoplasmic transport" evidence=ISS

GO:0051726 "regulation of cell cycle" evidence=ISS

GO:0006364 "rRNA processing" evidence=ISS

GO:0051276 "chromosome organization" evidence=IMP

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006997 "nucleus organization" evidence=IEA

GO:0031938 "regulation of chromatin silencing at telomere" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

GO:0000467 "exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

UNIPROTKB|Q59P43 GSP1 "RAN-like GTP binding protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
 Identities = 129/174 (74%), Positives = 144/174 (82%)

Query:     9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
             AT+GVEVHPL F TN G+++F  WDTAGQEKFGGLRDGYYI+GQC IIMFDVT+R+TYKN
Sbjct:    38 ATLGVEVHPLGFHTNFGELKFDVWDTAGQEKFGGLRDGYYINGQCGIIMFDVTSRITYKN 97

Query:    69 VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128
             VP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKP
Sbjct:    98 VPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKP 157

Query:   129 FLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDD 182
             FL+LARKL G+P L FV SPALAPPEVQ+D               + PLPD+DD
Sbjct:   158 FLWLARKLVGNPQLEFVASPALAPPEVQVDADLMQKYQQEMEQATALPLPDEDD 211

GO:0003924 "GTPase activity" evidence=IGI;ISS

GO:0005525 "GTP binding" evidence=IDA

GO:0006364 "rRNA processing" evidence=ISS

GO:0006913 "nucleocytoplasmic transport" evidence=ISS

GO:0051276 "chromosome organization" evidence=IMP

GO:0051726 "regulation of cell cycle" evidence=ISS

ASPGD|ASPL0000033427 ran [Emericella nidulans (taxid:162425)]

 Score = 704 (252.9 bits), Expect = 1.8e-69, P = 1.8e-69
 Identities = 128/174 (73%), Positives = 144/174 (82%)

Query:     9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
             AT+GVEVHP+ F TN G I+F  WDTAGQEKFGGLRDGYYI+GQC IIMFDVT+R+TYKN
Sbjct:    39 ATLGVEVHPIKFTTNLGTIQFDVWDTAGQEKFGGLRDGYYINGQCGIIMFDVTSRITYKN 98

Query:    69 VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128
             VP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKP
Sbjct:    99 VPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKP 158

Query:   129 FLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDD 182
             FL+LARKL G+ +L FV +PALAPPEVQ+D               +QPLPD+DD
Sbjct:   159 FLWLARKLVGNASLEFVAAPALAPPEVQVDATLMQQYSDEMAAAANQPLPDEDD 212

GO:0005622 "intracellular" evidence=IDA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005576 "extracellular region" evidence=IDA

GO:0006997 "nucleus organization" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3T054	RAN_BOVIN	No assigned EC number	0.76	0.9408	0.8101	yes	no
A2WSI7	RAN1_ORYSI	No assigned EC number	0.9578	0.8924	0.7511	N/A	no
O17915	RAN_CAEEL	No assigned EC number	0.8012	0.8924	0.7720	yes	no
P54766	RAN1B_LOTJA	No assigned EC number	0.9943	0.9516	0.8468	N/A	no
P54765	RAN1A_LOTJA	No assigned EC number	0.9887	0.9516	0.8468	N/A	no
P41917	RAN2_ARATH	No assigned EC number	0.9604	0.9516	0.8009	yes	no
P41916	RAN1_ARATH	No assigned EC number	0.9378	0.9516	0.8009	yes	no
P38546	RAN1_SOLLC	No assigned EC number	0.9491	0.9516	0.8009	N/A	no
P38547	RAN2_SOLLC	No assigned EC number	0.9548	0.9516	0.8009	N/A	no
P38542	RAN_BRUMA	No assigned EC number	0.8057	0.9408	0.8139	N/A	no
Q7F7I7	RAN1_ORYSJ	No assigned EC number	0.9578	0.8924	0.7511	yes	no
Q9VZ23	RAN_DROME	No assigned EC number	0.7485	0.9408	0.8101	yes	no
P38548	RAN_VICFA	No assigned EC number	0.9491	0.9516	0.8009	N/A	no
P41919	RANB1_TOBAC	No assigned EC number	0.9491	0.9516	0.8009	N/A	no
P41918	RANA1_TOBAC	No assigned EC number	0.9830	0.9516	0.8009	N/A	no
A2YEQ6	RAN3_ORYSI	No assigned EC number	0.8125	0.9462	0.7787	N/A	no
A2Y7R5	RAN2_ORYSI	No assigned EC number	0.9518	0.8924	0.7511	N/A	no
Q6FR65	GSP1_CANGA	No assigned EC number	0.7758	0.9354	0.8130	yes	no
Q4R4M9	RAN_MACFA	No assigned EC number	0.76	0.9408	0.8101	N/A	no
Q7GD79	RAN2_ORYSJ	No assigned EC number	0.9518	0.8924	0.7511	yes	no
Q74ZA9	GSP1_ASHGO	No assigned EC number	0.7758	0.9354	0.8130	yes	no
Q8K586	RANT_RAT	No assigned EC number	0.7314	0.9408	0.8101	no	no
P38544	RAN_ONCVO	No assigned EC number	0.7885	0.9408	0.8139	N/A	no
P52301	RAN_XENLA	No assigned EC number	0.76	0.9408	0.8101	N/A	no
P28748	SPI1_SCHPO	No assigned EC number	0.7643	0.9354	0.8055	yes	no
P32836	GSP2_YEAST	No assigned EC number	0.7758	0.9354	0.7909	yes	no
P32835	GSP1_YEAST	No assigned EC number	0.7816	0.9354	0.7945	yes	no
Q5R556	RAN_PONAB	No assigned EC number	0.76	0.9408	0.8101	yes	no
P79735	RAN_DANRE	No assigned EC number	0.7485	0.9408	0.8139	yes	no
P62828	RAN_RAT	No assigned EC number	0.76	0.9408	0.8101	yes	no
Q7RVL0	GSP1_NEUCR	No assigned EC number	0.7314	0.9408	0.8139	N/A	no
Q7ZZX9	RAN_CARAU	No assigned EC number	0.7428	0.9408	0.8139	N/A	no
P62825	RAN_CANFA	No assigned EC number	0.76	0.9408	0.8101	yes	no
P62826	RAN_HUMAN	No assigned EC number	0.76	0.9408	0.8101	yes	no
P62827	RAN_MOUSE	No assigned EC number	0.76	0.9408	0.8101	yes	no
Q9P4E9	GSP1_CANAW	No assigned EC number	0.7586	0.9354	0.8130	N/A	no
Q9YGC0	RAN_SALSA	No assigned EC number	0.7428	0.9408	0.8139	N/A	no
Q61820	RANT_MOUSE	No assigned EC number	0.7314	0.9408	0.8101	no	no
Q8H156	RAN3_ARATH	No assigned EC number	0.9887	0.9516	0.8009	yes	no
P33519	RAN_DICDI	No assigned EC number	0.6551	0.9354	0.8207	yes	no
Q8TFK3	GSP1_YARLI	No assigned EC number	0.7457	0.9516	0.8271	yes	no
P42558	RAN_CHICK	No assigned EC number	0.76	0.9408	0.8101	yes	no
P38545	RAN_PLAFA	No assigned EC number	0.6627	0.9193	0.7990	yes	no
Q6GL85	RAN_XENTR	No assigned EC number	0.7542	0.9408	0.8101	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	186
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	1e-149
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	1e-129
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	1e-128
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	1e-108
pfam00071	162	pfam00071, Ras, Ras family	1e-48
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	2e-36
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	1e-29
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	9e-25
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	2e-24
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	6e-23
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	7e-23
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	7e-23
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	3e-22
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	3e-22
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	1e-21
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	1e-21
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	2e-21
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	3e-21
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	3e-21
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	2e-20
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	3e-20
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	4e-20
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	4e-20
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	1e-19
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	2e-19
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	4e-19
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	9e-19
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	1e-18
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	2e-17
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	2e-17
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	3e-17
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	7e-17
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	8e-17
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	9e-17
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	1e-16
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	2e-16
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	3e-16
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	8e-16
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	1e-15
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	1e-15
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	5e-15
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	6e-15
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	6e-15
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	6e-15
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	1e-14
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	1e-14
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	4e-14
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	6e-14
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	7e-14
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	7e-14
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	2e-13
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	3e-13
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	8e-13
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	2e-12
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	4e-12
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	5e-12
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	7e-12
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	8e-12
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	1e-11
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	4e-11
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	8e-11
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	2e-10
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	3e-10
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	9e-10
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	8e-09
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	9e-09
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	3e-08
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	5e-08
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	1e-07
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	1e-07
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	2e-07
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	5e-07
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	6e-07
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	3e-05
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	6e-05
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	7e-05
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	1e-04
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	2e-04
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	3e-04
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	4e-04
pfam08477	116	pfam08477, Miro, Miro-like protein	0.002
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	0.003

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score =  411 bits (1058), Expect = e-149
 Identities = 174/177 (98%), Positives = 176/177 (99%)

Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
           + TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK
Sbjct: 43  EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 102

Query: 68  NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 127
           NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK
Sbjct: 103 NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162

Query: 128 PFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDA 184
           PFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA+QPLPDDDDDA
Sbjct: 163 PFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAAQPLPDDDDDA 219

Length = 219

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score =  361 bits (928), Expect = e-129
 Identities = 137/175 (78%), Positives = 151/175 (86%)

Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
            T+GVEVHPL F+TNCG I F  WDTAGQEKFGGLRDGYYI GQCAIIMFDVT+R+TYKN
Sbjct: 40  PTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKN 99

Query: 69  VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128
           VP WHRD+ RVCENIPIVL GNKVDVK+RQVKA+Q+TFHRKKNLQYY+ISAKSNYNFEKP
Sbjct: 100 VPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQYYDISAKSNYNFEKP 159

Query: 129 FLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDD 183
           FL+LAR+L  DPNL FV +PALAP E+QID     Q E EL AAA+ PLPDDDDD
Sbjct: 160 FLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAANVPLPDDDDD 214

Length = 215

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score =  358 bits (919), Expect = e-128
 Identities = 139/175 (79%), Positives = 151/175 (86%)

Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           AT+GVEVHPL F TN G IRF  WDTAGQEKFGGLRDGYYI GQCAIIMFDVTAR+TYKN
Sbjct: 26  ATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKN 85

Query: 69  VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128
           VP WHRDL RVCENIPIVLCGNKVDVK+R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKP
Sbjct: 86  VPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFHRKKNLQYYDISAKSNYNFEKP 145

Query: 129 FLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDD 183
           FL+LARKL GDPNL FV  PALAPPEV +D A   Q+E +L  AA+  LPD+DDD
Sbjct: 146 FLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAATTALPDEDDD 200

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score =  306 bits (787), Expect = e-108
 Identities = 117/136 (86%), Positives = 126/136 (92%)

Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           AT+GVEVHPLDF TN GKIRF  WDTAGQEKFGGLRDGYYI GQCAIIMFDVT+R+TYKN
Sbjct: 31  ATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKN 90

Query: 69  VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128
           VP WHRDL RVCENIPIVLCGNKVD+K+R+VK KQ+TFHRKKNLQYYEISAKSNYNFEKP
Sbjct: 91  VPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKPKQITFHRKKNLQYYEISAKSNYNFEKP 150

Query: 129 FLYLARKLAGDPNLHF 144
           FL+LARKL G+PNL F
Sbjct: 151 FLWLARKLLGNPNLEF 166

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  155 bits (394), Expect = 1e-48
 Identities = 48/132 (36%), Positives = 78/132 (59%), Gaps = 3/132 (2%)

Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
             TIGV+ +      +   ++   WDTAGQE+F  LR  YY   Q  ++++D+T+R +++
Sbjct: 29  IPTIGVDFYTKTIEVDGKTVKLQIWDTAGQERFRALRPLYYRGAQGFLLVYDITSRDSFE 88

Query: 68  NVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYN 124
           NV  W  ++ R   EN+PIVL GNK D+++ R V  ++     ++  L + E SAK+N N
Sbjct: 89  NVKKWLEEILRHADENVPIVLVGNKCDLEDQRVVSTEEGEALAKELGLPFMETSAKTNEN 148

Query: 125 FEKPFLYLARKL 136
            E+ F  LAR++
Sbjct: 149 VEEAFEELAREI 160

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  123 bits (312), Expect = 2e-36
 Identities = 50/132 (37%), Positives = 75/132 (56%), Gaps = 7/132 (5%)

Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
           K+TIGV+        +  K++   WDTAGQE+F  +   YY     AI+++DVT R +++
Sbjct: 30  KSTIGVDFKSKTIEVDGKKVKLQIWDTAGQERFRSITSSYYRGAHGAILVYDVTNRESFE 89

Query: 68  NVPTWHRDLCRVC-ENIPIVLCGNKVD-VKNRQV---KAKQVTFHRKKNLQYYEISAKSN 122
           N+  W  +L      NIPI+L GNK D    RQV   +A+Q  F ++  L ++E SAK+ 
Sbjct: 90  NLDKWLNELKEYAPPNIPIILVGNKSDLEDERQVSTEEAQQ--FAKENGLLFFETSAKTG 147

Query: 123 YNFEKPFLYLAR 134
            N ++ F  LAR
Sbjct: 148 ENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  106 bits (268), Expect = 1e-29
 Identities = 49/137 (35%), Positives = 78/137 (56%), Gaps = 13/137 (9%)

Query: 8   KATIGVEVHPLDF----FTNCGK-IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 62
           K+TIGV     DF        GK ++   WDTAGQE+F  +   YY     A++++D+T 
Sbjct: 30  KSTIGV-----DFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITN 84

Query: 63  RLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQVT-FHRKKNLQYYEISA 119
           R +++N+  W ++L      N+ I+L GNK D++  RQV  ++   F  +  L ++E SA
Sbjct: 85  RESFENLENWLKELREYASPNVVIMLVGNKSDLEEQRQVSREEAEAFAEEHGLPFFETSA 144

Query: 120 KSNYNFEKPFLYLARKL 136
           K+N N E+ F  LAR++
Sbjct: 145 KTNTNVEEAFEELAREI 161

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score = 94.0 bits (234), Expect = 9e-25
 Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 4/132 (3%)

Query: 8   KATIGVEVHPLDFFTNCGK--IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT 65
           K TIGV+      F       +R   WDTAGQE+F  +   YY   Q  I++F  T R +
Sbjct: 30  KKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRES 89

Query: 66  YKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQV-TFHRKKNLQYYEISAKSNY 123
           ++ + +W   +   C +IP+VL   K+D+ ++  +  ++     ++  L  +  S K ++
Sbjct: 90  FEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDF 149

Query: 124 NFEKPFLYLARK 135
           N  + F YLA K
Sbjct: 150 NVTELFEYLAEK 161

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score = 93.0 bits (232), Expect = 2e-24
 Identities = 38/108 (35%), Positives = 64/108 (59%), Gaps = 4/108 (3%)

Query: 33  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGN 90
           DTAGQE+F  +RD Y  +G   I+++ +T+R +++ +      + RV   E++PIVL GN
Sbjct: 53  DTAGQEEFSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIVLVGN 112

Query: 91  KVDVKN-RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           K D++N RQV  ++      +    + E SAK+N N ++ F  L R++
Sbjct: 113 KCDLENERQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score = 89.2 bits (222), Expect = 6e-23
 Identities = 50/137 (36%), Positives = 70/137 (51%), Gaps = 27/137 (19%)

Query: 8   KATIGVEVHPLDFFTN----CGK-IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 62
           K+TIGVE     F T      GK I+   WDTAGQE++  +   YY     A++++D+T 
Sbjct: 33  KSTIGVE-----FATRTIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK 87

Query: 63  RLTYKNVPTW------HRDLCRVCENIPIVLCGNKVDVKN-RQV---KAKQVTFHRKKNL 112
           + T++NV  W      H D      NI I+L GNK D+++ R V   +AK   F  K  L
Sbjct: 88  KSTFENVERWLKELRDHAD-----SNIVIMLVGNKSDLRHLRAVPTEEAKA--FAEKNGL 140

Query: 113 QYYEISAKSNYNFEKPF 129
            + E SA    N E+ F
Sbjct: 141 SFIETSALDGTNVEEAF 157

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score = 89.2 bits (222), Expect = 7e-23
 Identities = 35/109 (32%), Positives = 63/109 (57%), Gaps = 3/109 (2%)

Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGN 90
           WDTAGQE++  L   YY     AI+++D+T   +++ V  W ++L ++   NI +V+ GN
Sbjct: 54  WDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGN 113

Query: 91  KVD-VKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 137
           K+D  + R V   +   + +    +++E SAK+    E+ FL LA+++ 
Sbjct: 114 KIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRMI 162

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score = 89.1 bits (222), Expect = 7e-23
 Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 3/113 (2%)

Query: 27  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPI 85
           ++F  WDTAGQE++  L   YY     AI+++D+T+  +++   +W ++L      NI I
Sbjct: 50  VKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVI 109

Query: 86  VLCGNKVD-VKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
            L GNK D    RQV  ++   +  +  L + E SAK+  N  + F  +ARKL
Sbjct: 110 ALAGNKADLESKRQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKL 162

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 89.2 bits (221), Expect = 3e-22
 Identities = 43/150 (28%), Positives = 62/150 (41%), Gaps = 21/150 (14%)

Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-TY 66
             TIG              I+   WDTAGQE++  LR  YY      +I++D T R  + 
Sbjct: 35  PPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSD 94

Query: 67  KNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-----------------VKAKQVTFHR 108
           +    W  +L  +  +++PI+L GNK+D+ + Q                 V A +     
Sbjct: 95  ELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPE 154

Query: 109 KKNLQYYEISAKS--NYNFEKPFLYLARKL 136
             N    E SAKS    N  + F  L RKL
Sbjct: 155 VANPALLETSAKSLTGPNVNELFKELLRKL 184

Length = 219

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 87.4 bits (217), Expect = 3e-22
 Identities = 46/131 (35%), Positives = 71/131 (54%), Gaps = 3/131 (2%)

Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           +TIGV+        +  K++   WDTAGQE+F  L   YY   Q  I+++DVT R T+ N
Sbjct: 31  STIGVDFKVKTVTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFDN 90

Query: 69  VPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNF 125
           + TW  +L       +   +L GNK+D +NR+V  ++   F RK N+ + E SAK+    
Sbjct: 91  LDTWLNELDTYSTNPDAVKMLVGNKIDKENREVTREEGQKFARKHNMLFIETSAKTRIGV 150

Query: 126 EKPFLYLARKL 136
           ++ F  L  K+
Sbjct: 151 QQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score = 86.3 bits (214), Expect = 1e-21
 Identities = 43/131 (32%), Positives = 72/131 (54%), Gaps = 5/131 (3%)

Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIGVE        +  +I+   WDTAGQE F  +   YY     A++++D+T R T+ ++
Sbjct: 36  TIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL 95

Query: 70  PTWHRDLCR--VCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNF 125
            +W  D  R     N+ I+L GNK D+++R+  + +    F R+  L + E SAK+  N 
Sbjct: 96  TSWLED-ARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAREHGLIFMETSAKTASNV 154

Query: 126 EKPFLYLARKL 136
           E+ F+  A+++
Sbjct: 155 EEAFINTAKEI 165

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score = 86.1 bits (214), Expect = 1e-21
 Identities = 35/108 (32%), Positives = 62/108 (57%), Gaps = 8/108 (7%)

Query: 33  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGN 90
           DTAGQE+F  +RD Y   G+  ++++ +T R +++ +  +   + RV   +++PIVL GN
Sbjct: 54  DTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGN 113

Query: 91  KVDVKN-RQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 134
           K D+++ R V   + K++   R+    + E SAK   N ++ F  L R
Sbjct: 114 KCDLESERVVSTEEGKELA--RQWGCPFLETSAKERVNVDEAFYDLVR 159

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score = 85.4 bits (212), Expect = 2e-21
 Identities = 46/141 (32%), Positives = 71/141 (50%), Gaps = 18/141 (12%)

Query: 8   KATIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 62
           KATIG      DF T     +   +    WDTAGQE+F  L   +Y    C ++++DVT 
Sbjct: 30  KATIGA-----DFLTKEVTVDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTN 84

Query: 63  RLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDV-KNRQVKAKQVT--FHRKKNLQY 114
             +++++ +W  +          EN P V+ GNK+D+ + RQV  K+       K N+ Y
Sbjct: 85  PKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCKSKGNIPY 144

Query: 115 YEISAKSNYNFEKPFLYLARK 135
           +E SAK   N ++ F  +AR 
Sbjct: 145 FETSAKEAINVDQAFETIARL 165

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score = 84.9 bits (211), Expect = 3e-21
 Identities = 36/108 (33%), Positives = 62/108 (57%), Gaps = 8/108 (7%)

Query: 33  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGN 90
           DTAGQE+F  +RD Y   G+  ++++ +T R +++ +  +   + RV   +++PIVL GN
Sbjct: 56  DTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDDVPIVLVGN 115

Query: 91  KVDVKN-RQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 134
           K D++N R V   + K++   R+    + E SAK   N ++ F  L R
Sbjct: 116 KCDLENERVVSTEEGKELA--RQWGCPFLETSAKERINVDEAFYDLVR 161

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score = 84.6 bits (210), Expect = 3e-21
 Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 13/137 (9%)

Query: 8   KATIGVEVHPLDFFTNC-----GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 62
           +ATIG+     DF +         +R   WDTAGQE+F  L   Y      A++++D+T 
Sbjct: 30  QATIGI-----DFLSKTMYVDDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITN 84

Query: 63  RLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDV-KNRQVKAKQV-TFHRKKNLQYYEISA 119
           R ++ N   W  D+     N   IVL GNK D+   RQV  ++     ++ N  + E SA
Sbjct: 85  RQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKENNAMFIETSA 144

Query: 120 KSNYNFEKPFLYLARKL 136
           K+ +N ++ F  +A+ L
Sbjct: 145 KAGHNVKQLFKKIAQAL 161

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 82.6 bits (204), Expect = 2e-20
 Identities = 47/130 (36%), Positives = 68/130 (52%), Gaps = 3/130 (2%)

Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIGVE        N  KI+   WDTAGQE+F  +   YY     A++++D+T R TY ++
Sbjct: 34  TIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHL 93

Query: 70  PTWHRDLCRVCE-NIPIVLCGNKVDVK-NRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFE 126
            +W  D   +   N  I L GNK D++  R V  ++   F  +  L + E SAK+  N E
Sbjct: 94  SSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVE 153

Query: 127 KPFLYLARKL 136
             FL  A+K+
Sbjct: 154 DAFLETAKKI 163

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score = 82.3 bits (204), Expect = 3e-20
 Identities = 40/132 (30%), Positives = 70/132 (53%), Gaps = 11/132 (8%)

Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIG++        +  KI+   WDTAGQE+F  +   YY      I+++D+T   +++N+
Sbjct: 35  TIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTSYYRGAMGIILVYDITDEKSFENI 94

Query: 70  PTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL------QYYEISAKSN 122
             W R++     E++  +L GNK D++ +    + V+    + L      ++ E SAK+N
Sbjct: 95  KNWMRNIDEHASEDVERMLVGNKCDMEEK----RVVSKEEGEALAREYGIKFLETSAKAN 150

Query: 123 YNFEKPFLYLAR 134
            N E+ FL LA+
Sbjct: 151 INVEEAFLTLAK 162

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score = 82.1 bits (203), Expect = 4e-20
 Identities = 35/106 (33%), Positives = 61/106 (57%), Gaps = 4/106 (3%)

Query: 33  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGN 90
           DTAGQE+F  +R+ Y   G+  +++F VT R +++ V  +H  + RV   +  P++L GN
Sbjct: 56  DTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGN 115

Query: 91  KVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 134
           K D+++++  +++      R+  + Y E SAK   N +K F  L R
Sbjct: 116 KADLEHQRQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDLVR 161

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score = 82.0 bits (203), Expect = 4e-20
 Identities = 48/143 (33%), Positives = 76/143 (53%), Gaps = 27/143 (18%)

Query: 9   ATIGVEVHPLDFFTNCGKIR----------FYCWDTAGQEKFGGLRDGYYIHGQCAIIMF 58
           +TIGV     DF     KIR             WDTAGQE+F  +   YY      II++
Sbjct: 33  STIGV-----DF-----KIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 82

Query: 59  DVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQ 113
           DVT + ++ NV  W +++ R   EN+  +L GNK D+ +++V    +AK+  F  +  + 
Sbjct: 83  DVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKKVVDYTEAKE--FADELGIP 140

Query: 114 YYEISAKSNYNFEKPFLYLARKL 136
           + E SAK+  N E+ F+ +AR++
Sbjct: 141 FLETSAKNATNVEEAFMTMAREI 163

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 80.7 bits (199), Expect = 1e-19
 Identities = 38/98 (38%), Positives = 53/98 (54%), Gaps = 1/98 (1%)

Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNK 91
           WDTAGQE+F  +   YY      I++FDVT ++TYKN+  W+ +L      IP ++  NK
Sbjct: 54  WDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANK 113

Query: 92  VDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 129
           +D+    V  K+  F  K NL  Y +SA    N  K F
Sbjct: 114 IDLDPS-VTQKKFNFAEKHNLPLYYVSAADGTNVVKLF 150

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 80.2 bits (198), Expect = 2e-19
 Identities = 42/135 (31%), Positives = 70/135 (51%), Gaps = 12/135 (8%)

Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIGV+           +++   WDTAGQE+F  +   YY     AII +D+T R ++++V
Sbjct: 35  TIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESV 94

Query: 70  PTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYY-------EISAKS 121
           P W  ++ +    N+ ++L GNK D++ +    ++V F     L  +       E SAK 
Sbjct: 95  PHWIEEVEKYGASNVVLLLIGNKCDLEEQ----REVLFEEACTLAEHYGILAVLETSAKE 150

Query: 122 NYNFEKPFLYLARKL 136
           + N E+ FL +A +L
Sbjct: 151 SSNVEEAFLLMATEL 165

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 79.4 bits (196), Expect = 4e-19
 Identities = 42/131 (32%), Positives = 68/131 (51%), Gaps = 5/131 (3%)

Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIGVE            ++   WDTAGQE+F  +   YY     A++++D+T+R ++  +
Sbjct: 32  TIGVEFGSRVVNVGGKSVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRESFNAL 91

Query: 70  PTWHRDLCR--VCENIPIVLCGNKVDVK-NRQVKAKQV-TFHRKKNLQYYEISAKSNYNF 125
             W  D  R     +I I+L GNK D++ +R+V   +   F ++  L + E SA +  N 
Sbjct: 92  TNWLTD-ARTLASPDIVIILVGNKKDLEDDREVTFLEASRFAQENGLLFLETSALTGENV 150

Query: 126 EKPFLYLARKL 136
           E+ FL  AR +
Sbjct: 151 EEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score = 79.3 bits (196), Expect = 9e-19
 Identities = 58/175 (33%), Positives = 79/175 (45%), Gaps = 21/175 (12%)

Query: 8   KATIGVE----VHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR 63
           KATIGV+    V   D  T     R   WD AGQE+FGG+   YY     AII+FDVT  
Sbjct: 30  KATIGVDFALKVIEWDPNTVV---RLQLWDIAGQERFGGMTRVYYKGAVGAIIVFDVTRP 86

Query: 64  LTYKNVPTWHRDL-CRVC----ENIPIVLCGNKVDVKNRQVKAKQVTFHR--KKN--LQY 114
            T++ V  W  DL  +V     E IP +L  NK D+K  ++        +  K+N  + +
Sbjct: 87  STFEAVLKWKADLDSKVTLPNGEPIPALLLANKCDLKKERLAKDPEQMDQFCKENGFIGW 146

Query: 115 YEISAKSNYNFEKPFLYLARK-LAGDPNLHFVESPALAPPEVQIDLAAQQQHEAE 168
           +E SAK N N E+   +L +  L  D  L           +  IDL  +      
Sbjct: 147 FETSAKENINIEEAMRFLVKNILKNDKGLQ----SPEPDEDNVIDLKQETTTSKS 197

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 78.7 bits (194), Expect = 1e-18
 Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 4/106 (3%)

Query: 26  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENI 83
           ++    WDTAGQE+F  L   ++      ++MFD+T+  ++ NV  W   L     CEN 
Sbjct: 62  RVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENP 121

Query: 84  PIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEK 127
            IVL GNK D+ + R+V  +Q      K  + Y+E SA +  N EK
Sbjct: 122 DIVLIGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEK 167

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 74.8 bits (184), Expect = 2e-17
 Identities = 34/107 (31%), Positives = 61/107 (57%), Gaps = 3/107 (2%)

Query: 33  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGN 90
           DTAGQE++  +RD Y   G+  + +F + +R +++++ T+   + RV   +++P+VL GN
Sbjct: 55  DTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGN 114

Query: 91  KVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           K D+  R V  +Q     +   + Y E SAK+    E+ F  L R++
Sbjct: 115 KCDLAARTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 74.9 bits (184), Expect = 2e-17
 Identities = 45/131 (34%), Positives = 71/131 (54%), Gaps = 3/131 (2%)

Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           ATIGV+           KI+   WDTAGQE+F  +   YY      I+ +D+T   +++ 
Sbjct: 38  ATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRC 97

Query: 69  VPTWHRDLCRVCEN-IPIVLCGNKVDVKNRQVKAKQVT--FHRKKNLQYYEISAKSNYNF 125
           +P W R++ +   N +  +L GNK+D+  R+  ++Q    F   +++ Y E SAK + N 
Sbjct: 98  LPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNV 157

Query: 126 EKPFLYLARKL 136
           EK FL LA +L
Sbjct: 158 EKLFLDLACRL 168

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 75.9 bits (186), Expect = 3e-17
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 5/138 (3%)

Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIGV+           +++   WDTAGQE+F  L   YY + Q  I+++DVT R T+ N+
Sbjct: 45  TIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNL 104

Query: 70  P-TWHRDLCRVCENIPIV--LCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYN 124
              W +++     N   V  L GNKVD ++ +  +++  +   ++    + E SAK+  N
Sbjct: 105 SDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTREN 164

Query: 125 FEKPFLYLARKLAGDPNL 142
            E+ F  LA K+   P+L
Sbjct: 165 VEQCFEELALKIMEVPSL 182

Length = 211

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 74.3 bits (182), Expect = 7e-17
 Identities = 40/130 (30%), Positives = 73/130 (56%), Gaps = 4/130 (3%)

Query: 7   GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTY 66
            K+T+GV+           KIR   WDTAGQE+F  +   YY   +  I+++D+T + T+
Sbjct: 29  CKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETF 88

Query: 67  KNVPTWHRDLCR-VCENIPIVLCGNKVDVK-NRQVKAKQVT--FHRKKNLQYYEISAKSN 122
            ++P W + + +   E+  ++L GNK+D + +R++  +Q      +   +++ E SAK N
Sbjct: 89  DDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDN 148

Query: 123 YNFEKPFLYL 132
           +N ++ FL L
Sbjct: 149 FNVDEIFLKL 158

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 74.1 bits (182), Expect = 8e-17
 Identities = 45/141 (31%), Positives = 68/141 (48%), Gaps = 11/141 (7%)

Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYY--IHGQCAIIMFDVTARLTYK 67
           TIGV+        N  +++   WDTAGQE+F  +   YY   HG   I+++DVT   ++ 
Sbjct: 38  TIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHG--VIVVYDVTNGESFV 95

Query: 68  NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNF 125
           NV  W +++ + C+++  VL GNK D   R+V        F  +  +  +E SAK N N 
Sbjct: 96  NVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINV 155

Query: 126 EKPF-----LYLARKLAGDPN 141
           E+ F     L L  K      
Sbjct: 156 EEMFNCITELVLRAKKDNLAK 176

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 74.6 bits (183), Expect = 9e-17
 Identities = 48/150 (32%), Positives = 73/150 (48%), Gaps = 8/150 (5%)

Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
           K+TIGVE            ++   WDTAGQE++  +   YY     A++++D+T R T+ 
Sbjct: 42  KSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFD 101

Query: 68  NVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYN 124
           NV  W R+L    + NI I++ GNK D+ + R V  +       K+ L + E SA    N
Sbjct: 102 NVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATN 161

Query: 125 FEKPFLYLARKLAGDPNLHFVESPALAPPE 154
            EK F  +  ++      H +   ALA  E
Sbjct: 162 VEKAFQTILLEI-----YHIISKKALAAQE 186

Length = 216

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 72.9 bits (179), Expect = 1e-16
 Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 11/133 (8%)

Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG-----QCAIIMFDVTARL 64
           T   +V+  +      K+     DT G ++FGGL                +++ D T R 
Sbjct: 32  TRDPDVYVKELDKGKVKLVL--VDTPGLDEFGGLGREELARLLLRGADLILLVVDSTDRE 89

Query: 65  TYKNVPTWHRDLCRVCENIPIVLCGNKVD-VKNRQVKAKQVTFHRKK--NLQYYEISAKS 121
           + ++            E IPI+L GNK+D ++ R+V+         K   +  +E+SAK+
Sbjct: 90  SEEDA-KLLILRRLRKEGIPIILVGNKIDLLEEREVEELLRLEELAKILGVPVFEVSAKT 148

Query: 122 NYNFEKPFLYLAR 134
               ++ F  L  
Sbjct: 149 GEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 72.9 bits (178), Expect = 2e-16
 Identities = 45/138 (32%), Positives = 78/138 (56%), Gaps = 6/138 (4%)

Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
           ++TIG++      + + G +R   WDTAGQE+F  L   Y      AI+++D+T R +++
Sbjct: 10  QSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFE 69

Query: 68  NVPTWHRD-LCRVCENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYN 124
           N   W +D L    +++ I L GNK D+ + R+V  ++ +   ++ N  ++E SAK+ +N
Sbjct: 70  NTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHN 129

Query: 125 FEKPFLYLARKLAGDPNL 142
            +  F  +A KL   PNL
Sbjct: 130 IKVLFKKIAAKL---PNL 144

Length = 176

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 71.8 bits (176), Expect = 3e-16
 Identities = 34/108 (31%), Positives = 62/108 (57%), Gaps = 4/108 (3%)

Query: 33  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGN 90
           DTAG E+F  +RD Y  +GQ  ++++ +TA+ T+ ++      + RV   E++P++L GN
Sbjct: 55  DTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGN 114

Query: 91  KVDVKNRQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           K D+++ +V  K+      R+    + E SAK+  N  + F  L R++
Sbjct: 115 KCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 71.7 bits (176), Expect = 8e-16
 Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 15/138 (10%)

Query: 10  TIGVEVHPLDFFTNC------GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR 63
           T+GV     DFF+         +I+   WDTAGQE+F  +   YY +    +++FD+T R
Sbjct: 34  TVGV-----DFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNR 88

Query: 64  LTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISA 119
            ++++V  W  +            +L G+K D+++ RQV + +     +   ++Y E SA
Sbjct: 89  ESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSA 148

Query: 120 KSNYNFEKPFLYLARKLA 137
           ++  N E+ F  L +++ 
Sbjct: 149 RTGDNVEEAFELLTQEIY 166

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 70.7 bits (173), Expect = 1e-15
 Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 7/133 (5%)

Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIGVE    D   +   +    WDTAGQE+F  LR  +Y    C ++ F V    +++N+
Sbjct: 37  TIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL 96

Query: 70  PTWHRDL-----CRVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSN 122
             W ++       +  E+ P V+ GNK+D+  RQV  +  Q       +  Y+E SAK  
Sbjct: 97  SNWKKEFIYYADVKEPESFPFVILGNKIDIPERQVSTEEAQAWCRDNGDYPYFETSAKDA 156

Query: 123 YNFEKPFLYLARK 135
            N    F    R+
Sbjct: 157 TNVAAAFEEAVRR 169

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 71.1 bits (174), Expect = 1e-15
 Identities = 42/130 (32%), Positives = 69/130 (53%), Gaps = 3/130 (2%)

Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIGVE        +   I+   WDTAGQE F  +   YY     A++++D+T R T+ ++
Sbjct: 38  TIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL 97

Query: 70  PTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFE 126
            +W  D  +    N+ I+L GNK D+ +R+  + +    F ++  L + E SAK+  N E
Sbjct: 98  ASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVE 157

Query: 127 KPFLYLARKL 136
           + F+  A K+
Sbjct: 158 EAFIKTAAKI 167

Length = 210

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score = 69.1 bits (169), Expect = 5e-15
 Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 6/110 (5%)

Query: 33  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN----IPIVLC 88
           DTAGQE++  LRD +   G+  I+++ +T+R T++ V  +   + RV +     +PI++ 
Sbjct: 53  DTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIV 112

Query: 89  GNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           GNK D    +  + +      R+   ++ E SAK+N N E+ F  L R L
Sbjct: 113 GNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRAL 162

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 69.1 bits (169), Expect = 6e-15
 Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 3/114 (2%)

Query: 26  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIP 84
           K++   WDTAGQE+F  +   YY      ++++DVT + ++ N+  W  ++      ++ 
Sbjct: 49  KVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVV 108

Query: 85  IVLCGNKVDVK-NRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           I+L GNK D+   R VK +      ++  + + E SAK+  N E  F  +A++L
Sbjct: 109 IMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKEL 162

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 68.5 bits (167), Expect = 6e-15
 Identities = 38/128 (29%), Positives = 66/128 (51%), Gaps = 3/128 (2%)

Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           +TIGV+        +  K+R   WDTAGQE++  +   YY   Q   +++D+++  +Y++
Sbjct: 31  STIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQH 90

Query: 69  VPTWHRDLCRVC-ENIPIVLCGNKVDV-KNRQVKAKQVTFHRKKNLQ-YYEISAKSNYNF 125
           +  W  D+     E +  +L GNK D  + RQV  +Q     K+    ++E SA +N N 
Sbjct: 91  IMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNKNI 150

Query: 126 EKPFLYLA 133
           ++ F  L 
Sbjct: 151 KESFTRLT 158

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 68.3 bits (167), Expect = 6e-15
 Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 4/108 (3%)

Query: 33  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGN 90
           DTAG E+F  +RD Y  +GQ  I+++ +  + T++++      + RV   E +PI+L GN
Sbjct: 55  DTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGN 114

Query: 91  KVDVK-NRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           KVD++  R+V  A+      +    + E SAKS     + F  + R++
Sbjct: 115 KVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 67.8 bits (166), Expect = 1e-14
 Identities = 27/126 (21%), Positives = 55/126 (43%), Gaps = 4/126 (3%)

Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL--T 65
           K              +    +F   DTAGQE +  +R  YY   + ++ +FD+   +   
Sbjct: 32  KPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYDAIRRLYYRAVESSLRVFDIVILVLDV 91

Query: 66  YKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNY 123
            + +    +++    E  +PI+L GNK+D+++ ++K      F +        +SA++  
Sbjct: 92  EEILEKQTKEIIHHAESGVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGK 151

Query: 124 NFEKPF 129
           N +  F
Sbjct: 152 NIDSAF 157

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 67.5 bits (165), Expect = 1e-14
 Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 4/108 (3%)

Query: 33  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGN 90
           DTAGQE +  +RD Y+  G+  +++F +T   ++  +  +   + RV   +N+P++L GN
Sbjct: 54  DTAGQEDYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGN 113

Query: 91  KVD-VKNRQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           K D    RQV   +      +  + Y E SAK+  N +K F  L R++
Sbjct: 114 KCDLEDKRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVREI 161

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 66.8 bits (163), Expect = 4e-14
 Identities = 32/108 (29%), Positives = 61/108 (56%), Gaps = 4/108 (3%)

Query: 33  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN--IPIVLCGN 90
           DTAGQE++  +RD Y   GQ  + ++ +T+R +++ + ++   + RV +   +P++L GN
Sbjct: 59  DTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGN 118

Query: 91  KVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           K D+ + RQV   +     +   + + E SAK   N ++ F  L R++
Sbjct: 119 KCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREI 166

Length = 189

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 66.0 bits (161), Expect = 6e-14
 Identities = 34/109 (31%), Positives = 64/109 (58%), Gaps = 5/109 (4%)

Query: 33  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGN 90
           DTAG E+F  +R+ Y   GQ  ++++ VT+  +   +      + R+   +N+P+VL GN
Sbjct: 55  DTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGN 114

Query: 91  KVDVKN-RQV-KAKQVTFHRK-KNLQYYEISAKSNYNFEKPFLYLARKL 136
           K D+++ RQV +   V+  ++  N+ +YE SA+   N ++ F+ L R++
Sbjct: 115 KADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQI 163

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 65.6 bits (161), Expect = 7e-14
 Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 15/118 (12%)

Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGN 90
           WDTAGQE++  LR   Y      ++ F V +  +++NV T W+ ++   C N+PI+L G 
Sbjct: 53  WDTAGQEEYDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYCPNVPIILVGT 112

Query: 91  KVD-------VKNRQVKAKQVTF-------HRKKNLQYYEISAKSNYNFEKPFLYLAR 134
           K+D       +K  + K K +T             ++Y E SA +    ++ F    R
Sbjct: 113 KIDLRDDGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVFDEAIR 170

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 66.1 bits (161), Expect = 7e-14
 Identities = 33/131 (25%), Positives = 66/131 (50%), Gaps = 7/131 (5%)

Query: 26  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 85
           +++   WDT+GQ +F  +   Y    Q  I+++D+T R ++  +  W +++      +P 
Sbjct: 54  RVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPK 113

Query: 86  VLCGNKVDVK-NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLH 143
           +L GN++ +   RQV  +Q   +  +  + ++E+S   N+N  + F  LAR +     L 
Sbjct: 114 ILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIV-----LM 168

Query: 144 FVESPALAPPE 154
               P  +PP+
Sbjct: 169 RHGRPPQSPPQ 179

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 64.8 bits (158), Expect = 2e-13
 Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 10/137 (7%)

Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-GGLRDGYYIHGQCAIIMFDVTARLTYK 67
           ATIGV+        +  +I+   WDTAGQE+F   +   YY +    + ++DVT   ++ 
Sbjct: 33  ATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFH 92

Query: 68  NVPTWHRDLCR---VCENIPIVLCGNKVDVK-NRQVKAKQVT-FHRKKNLQYYEISAK-- 120
           ++P+W  + C    +   +P +L GNK D++   QV       F    ++  +E SAK  
Sbjct: 93  SLPSWIEE-CEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDP 151

Query: 121 -SNYNFEKPFLYLARKL 136
             N + E  F+ LA KL
Sbjct: 152 SENDHVEAIFMTLAHKL 168

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 64.2 bits (156), Expect = 3e-13
 Identities = 36/128 (28%), Positives = 66/128 (51%), Gaps = 11/128 (8%)

Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           +T+G++      + N  +I+   WDTAGQE++  +   YY      I+M+D+T   ++  
Sbjct: 32  STVGIDFKVKTVYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNA 91

Query: 69  VPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL------QYYEISAKS 121
           V  W   +     +N  ++L GNK D+++ +V    V+  R + L      +++E SAK 
Sbjct: 92  VQDWSTQIKTYSWDNAQVILVGNKCDMEDERV----VSAERGRQLADQLGFEFFEASAKE 147

Query: 122 NYNFEKPF 129
           N N ++ F
Sbjct: 148 NINVKQVF 155

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 63.0 bits (153), Expect = 8e-13
 Identities = 35/109 (32%), Positives = 64/109 (58%), Gaps = 5/109 (4%)

Query: 33  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGN 90
           DTAG E+F  +RD Y  +GQ   +++ +TA+ ++ ++      + RV   E++P++L GN
Sbjct: 55  DTAGTEQFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGN 114

Query: 91  KVDVKNRQVKAKQ--VTFHRK-KNLQYYEISAKSNYNFEKPFLYLARKL 136
           K D+++ +V +K+      R+  N  + E SAKS  N ++ F  L R++
Sbjct: 115 KCDLEDERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQI 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 62.6 bits (152), Expect = 2e-12
 Identities = 39/140 (27%), Positives = 70/140 (50%), Gaps = 15/140 (10%)

Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNK 91
           WDTAG E++  +   YY   + AI+ +D+T   +++    W ++L  + E+  I LCG K
Sbjct: 55  WDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTK 114

Query: 92  VDVKNRQVKAKQVTFHRKKNL------QYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 145
            D+  +    +QV FH  ++       Q++E S+K+  N ++ F    +K+A D    FV
Sbjct: 115 SDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELF----QKVAED----FV 166

Query: 146 E-SPALAPPEVQIDLAAQQQ 164
             +      E  +DL  ++ 
Sbjct: 167 SRANNQMNTEKGVDLGQKKN 186

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 61.1 bits (149), Expect = 4e-12
 Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 16/109 (14%)

Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGN 90
           WDTAGQE +  LR   Y      +I F V +  +++NV   W+ ++   C N+PI+L G 
Sbjct: 51  WDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNVPIILVGT 110

Query: 91  KVDV--------KNRQVKAKQVTFHRKKNL-------QYYEISAKSNYN 124
           K+D+        +  + K + VT+ + + L       +Y E SA +   
Sbjct: 111 KLDLRNDKSTLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEG 159

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 61.0 bits (148), Expect = 5e-12
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 4/112 (3%)

Query: 27  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI--P 84
           +  + +D+AGQE F  + +  +       +++DVT  +++ N   W   +      +  P
Sbjct: 53  VELFIFDSAGQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTP 112

Query: 85  IVLCGNKVD-VKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLAR 134
            VL GNK D    R+V A Q     +   L++YE SAK    +E PFL LAR
Sbjct: 113 GVLVGNKCDLTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSLAR 164

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 60.4 bits (147), Expect = 7e-12
 Identities = 34/138 (24%), Positives = 69/138 (50%), Gaps = 12/138 (8%)

Query: 9   ATIGVE--VHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTY 66
            TIG++  V  +    N  ++R   +D +G  ++  +R+ +Y   Q  ++++DVT R ++
Sbjct: 31  PTIGIDYGVKKVSV-RNK-EVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSF 88

Query: 67  KNVPTWHRDL------CRVCENIPIVLCGNKVD-VKNRQVKAKQ-VTFHRKKNLQYYEIS 118
           + + +W +++          ENI +V+C NK+D  K+R V   +   +   K  +Y+E S
Sbjct: 89  EALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETS 148

Query: 119 AKSNYNFEKPFLYLARKL 136
           A +     + F  L   +
Sbjct: 149 ACTGEGVNEMFQTLFSSI 166

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 60.3 bits (146), Expect = 8e-12
 Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 4/109 (3%)

Query: 33  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGN 90
           DTAGQ +F  +RD Y   G+  II + VT R +++    +   + RV   E+IP+VL GN
Sbjct: 56  DTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRLTEDIPLVLVGN 115

Query: 91  KVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 137
           KVD++  RQV  ++     R+ N  ++E SA   +  +  F  L R++ 
Sbjct: 116 KVDLEQQRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREIR 164

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 60.4 bits (147), Expect = 1e-11
 Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 16/114 (14%)

Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGN 90
           WDTAGQE +  LR   Y      +I + V    +  NV   W+ ++   C   PIVL G 
Sbjct: 57  WDTAGQEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVNHFCPGTPIVLVGL 116

Query: 91  KVDV---KNRQVKAKQ-----VTFHRKKNL-------QYYEISAKSNYNFEKPF 129
           K D+   KN   K +      VT  + +++        Y E SAK   N ++ F
Sbjct: 117 KTDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVF 170

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 58.7 bits (142), Expect = 4e-11
 Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 12/128 (9%)

Query: 19  DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLC 77
           D F +   +    WDTAGQE+F  LR   Y      ++ F V    + +NV + W  ++ 
Sbjct: 40  DIFVDGLAVELSLWDTAGQEEFDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIR 99

Query: 78  RVCENIPIVLCGNKVDVK---NRQVKAKQVTFH--------RKKNLQYYEISAKSNYNFE 126
             C  + +VL   K D++   N + +      +        R    +Y E SAK N    
Sbjct: 100 HHCPGVKLVLVALKCDLREPRNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVN 159

Query: 127 KPFLYLAR 134
           + F   AR
Sbjct: 160 EAFTEAAR 167

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 58.1 bits (140), Expect = 8e-11
 Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGN 90
           WDTAGQE++  LR   Y      II F + +  +Y+NV   WH ++C  C N+PI+L G 
Sbjct: 56  WDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGT 115

Query: 91  KVDVKN 96
           K D++N
Sbjct: 116 KKDLRN 121

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 56.4 bits (136), Expect = 2e-10
 Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 11/142 (7%)

Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
           KATIGV+     F           WDTAGQE+F  +   YY   Q  II+FD+T   + +
Sbjct: 30  KATIGVDFEMERFEVLGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLE 89

Query: 68  NVPTWHRDLCRVCENIP----IVLCGNKVDVKN----RQVKAKQVTFHRKKNLQYYEISA 119
           +   W  D  +  EN P    + L G K D+ +      ++   +   R+   +Y+ +SA
Sbjct: 90  HTRQWLEDALK--ENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAREMKAEYWAVSA 147

Query: 120 KSNYNFEKPFLYLARKLAGDPN 141
            +  N  + F +    L  +  
Sbjct: 148 LTGENV-RDFFFRVASLTFELG 168

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 56.1 bits (136), Expect = 3e-10
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 8/103 (7%)

Query: 33  DTAGQEKFGGLRDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLC 88
           DTAGQ+++  L   Y   IHG   I+++ VT+R +++ V   +  +  +   E++PIVL 
Sbjct: 55  DTAGQDEYSILPQKYSIGIHG--YILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLV 112

Query: 89  GNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPF 129
           GNK D+   RQV A++           + E SAK N N E+ F
Sbjct: 113 GNKSDLHMERQVSAEEGKKLAESWGAAFLESSAKENENVEEAF 155

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 55.2 bits (133), Expect = 9e-10
 Identities = 44/146 (30%), Positives = 71/146 (48%), Gaps = 23/146 (15%)

Query: 8   KATIGVEVHPLDFFTNCGKIRF--------YCWDTAGQEKFGGLRDGYYIHG-QCAIIMF 58
           K TIG+     DFF+   +I            WD  GQ+  G + D  YI+G Q   +++
Sbjct: 30  KQTIGL-----DFFSR--RITLPGSLNVTLQVWDIGGQQIGGKMLDK-YIYGAQAVCLVY 81

Query: 59  DVTARLTYKNVPTWHRDLCRVCEN----IPIVLCGNKVDV-KNRQVKA-KQVTFHRKKNL 112
           D+T   +++N+  W   + +V E       +VL GNK D+  NRQV A K   F ++ ++
Sbjct: 82  DITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNKTDLEHNRQVTAEKHARFAQENDM 141

Query: 113 QYYEISAKSNYNFEKPFLYLARKLAG 138
           +   +SAK+       F  +A +L G
Sbjct: 142 ESIFVSAKTGDRVFLCFQRIAAELLG 167

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 52.0 bits (125), Expect = 8e-09
 Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 16/107 (14%)

Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGN 90
           WDTAGQE +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GN
Sbjct: 54  WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN 113

Query: 91  KVDVKN--------RQVKAKQVTFHRKKNL-------QYYEISAKSN 122
           K D++N         ++K + V     + +        Y E SAK+ 
Sbjct: 114 KKDLRNDEHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTK 160

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 52.8 bits (127), Expect = 9e-09
 Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 33/136 (24%)

Query: 33  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI--------- 83
           DT+G   F  +R    + G   I++F +  R +++ V       CR+ E I         
Sbjct: 54  DTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEV-------CRLREQILETKSCLKN 106

Query: 84  --------PIVLCGNKVDVK-NRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYL 132
                   P+V+CGNK D    R+V+  +V       +N  Y+E+SAK N N ++ F  L
Sbjct: 107 KTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRAL 166

Query: 133 ARKLAG-----DPNLH 143
              LA       P+LH
Sbjct: 167 F-SLAKLPNEMSPSLH 181

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 51.0 bits (122), Expect = 3e-08
 Identities = 44/154 (28%), Positives = 70/154 (45%), Gaps = 15/154 (9%)

Query: 14  EVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWH 73
           E+H  ++     K+     DT+G   F  +R     +G    +++ V    +++ V    
Sbjct: 34  ELHSKEYEVAGVKVTIDILDTSGSYSFPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLR 93

Query: 74  RDLCRVCEN--IPIVLCGNKVD-VKNRQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKP 128
            ++  V E+  +PIV+ GNK+D +  RQV+A     T     N  + E SAK N N  + 
Sbjct: 94  EEILEVKEDKFVPIVVVGNKIDSLAERQVEAADALSTVELDWNNGFVEASAKDNENVTEV 153

Query: 129 FLYLARKLAGDPNLHFVESPAL------APPEVQ 156
           F    ++L    NL    SPAL      AP E+Q
Sbjct: 154 F----KELLQQANLPSWLSPALRRRRESAPSEIQ 183

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 50.2 bits (120), Expect = 5e-08
 Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           WDTAGQE +  LR   Y      ++ F + ++ +Y+NV   W  +L      +PIVL G 
Sbjct: 54  WDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYAPGVPIVLVGT 113

Query: 91  KVDVKN 96
           K+D+++
Sbjct: 114 KLDLRD 119

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 49.1 bits (117), Expect = 1e-07
 Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 6/103 (5%)

Query: 33  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR----VCENIPIVLC 88
           DT G  +F  ++      G   I+++ +T++ + + +   +  +C       E IPI+L 
Sbjct: 55  DTTGSHQFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLV 114

Query: 89  GNKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPF 129
           GNK D   +R+V + +     R  N  + E SAK+N+N ++ F
Sbjct: 115 GNKCDESPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELF 157

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 49.0 bits (117), Expect = 1e-07
 Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGN 90
           WDTAGQE +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G 
Sbjct: 54  WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 113

Query: 91  KVDVKNRQVKAKQVTFHRKKNLQYYEISAKSN 122
           K+D+++ +   +++   +   + Y +  A + 
Sbjct: 114 KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK 145

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 48.3 bits (115), Expect = 2e-07
 Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 21/142 (14%)

Query: 14  EVHPLDF---FTNC---GK-IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTY 66
           E HP  F    T+C   GK ++   WDTAGQE++  LR   Y      +I F +    + 
Sbjct: 29  EYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAIDTPDSL 88

Query: 67  KNVPT-WHRDLCRVCENIPIVLCGNKVDV------KNRQVKAKQVTFHRKKNL------- 112
           +NV T W  ++ R C N+P++L G K D+      K      + V   + K +       
Sbjct: 89  ENVRTKWIEEVRRYCPNVPVILVGLKKDLRQEAVAKGNYATDEFVPIQQAKLVARAIGAK 148

Query: 113 QYYEISAKSNYNFEKPFLYLAR 134
           +Y E SA +    +  F    R
Sbjct: 149 KYMECSALTGEGVDDVFEAATR 170

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 47.4 bits (113), Expect = 5e-07
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 26  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIP 84
           +I    WDT+G   +  +R   Y      +I FD++   T  +V   W  ++   C N P
Sbjct: 48  RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFCPNTP 107

Query: 85  IVLCGNKVDVKN 96
           ++L G K D++ 
Sbjct: 108 VLLVGCKSDLRT 119

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 47.0 bits (112), Expect = 6e-07
 Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 16/119 (13%)

Query: 27  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPI 85
           +R    DTAGQ++F  LR   Y      ++ F V    +++N+   W  ++ +     PI
Sbjct: 48  VRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPI 107

Query: 86  VLCGNKVD--------VKNRQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPF 129
           +L G + D        ++  +   K V+  R K L       +Y E SA +  N ++ F
Sbjct: 108 ILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 42.2 bits (99), Expect = 3e-05
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           +DTAGQE +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G 
Sbjct: 54  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 113

Query: 91  KVDVKN 96
           ++D+++
Sbjct: 114 QIDLRD 119

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 41.1 bits (97), Expect = 6e-05
 Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 13/110 (11%)

Query: 25  GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--- 81
           G +    WD  GQ +F  + + Y       + + D   R     +     +L  + E   
Sbjct: 42  GNVTIKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRE---KLEVAKNELHDLLEKPS 98

Query: 82  --NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ-----YYEISAKSNYN 124
              IP+++ GNK D+       + +     K++       Y ISAK   N
Sbjct: 99  LEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISAKEKTN 148

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 41.1 bits (97), Expect = 7e-05
 Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 21/107 (19%)

Query: 32  WDTAGQEKFGG-------LR--DGYYIHGQCAIIMFDVTARLTYKNVPTWH---RDLCRV 79
            DT GQ++          LR  DG+       ++++ +T R ++  V       R++ + 
Sbjct: 52  QDTPGQQQNEDPESLERSLRWADGF-------VLVYSITDRSSFDVVSQLLQLIREIKKR 104

Query: 80  CENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYN 124
              IP++L GNK D+ + RQV   +      +    ++E+SA  NY 
Sbjct: 105 DGEIPVILVGNKADLLHSRQVSTEEGQKLALELGCLFFEVSAAENYL 151

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 40.4 bits (94), Expect = 1e-04
 Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 1/118 (0%)

Query: 14  EVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTW 72
           E +   F  +  +I    WDT+G   +  +R   Y      +I FD++   T  +V   W
Sbjct: 40  ENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKW 99

Query: 73  HRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 130
             ++   C N  ++L G K D++       +++ HR+  + Y + +  +       ++
Sbjct: 100 KGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYI 157

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           +DTAGQE +  LR   Y      +I F V    +++NV   W  +L     N+P +L G 
Sbjct: 53  YDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLIGT 112

Query: 91  KVDVKN 96
           ++D+++
Sbjct: 113 QIDLRD 118

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 24/133 (18%), Positives = 52/133 (39%), Gaps = 17/133 (12%)

Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIG  V  +++      ++F  WD  GQ+K   L   YY +    I + D + R   + +
Sbjct: 30  TIGFNVETVEY----KNVKFTVWDVGGQDKIRPLWKHYYENTDGLIFVVDSSDR---ERI 82

Query: 70  PTWHRDLCRVCE-----NIPIVLCGNKVDVKNRQVKAK-----QVTFHRKKNLQYYEISA 119
                +L ++         P+++  NK D+     +++      +   + +       SA
Sbjct: 83  EEAKNELHKLLNEEELKGAPLLILANKQDLPGALTESELIELLGLESIKGRRWHIQPCSA 142

Query: 120 KSNYNFEKPFLYL 132
            +    ++   +L
Sbjct: 143 VTGDGLDEGLDWL 155

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 35/141 (24%), Positives = 53/141 (37%), Gaps = 40/141 (28%)

Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC---RVCENIPIVLC 88
           WDTAG+E+F GL   Y       I+ +DV+   + + +    R L       E+    + 
Sbjct: 49  WDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEEL--EDRFLGLTDTANEDCLFAVV 106

Query: 89  GNKVDVKNRQVKA---------------KQVTFH----------RKKNLQ---------- 113
           GNK+D+      A               +QVT            + K L           
Sbjct: 107 GNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKM 166

Query: 114 YYEISAKSNYNFEKPFLYLAR 134
            +E SAK+ YN ++ F YL  
Sbjct: 167 CFETSAKTGYNVDELFEYLFN 187

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 7/71 (9%)

Query: 26  KIRFYCWDTAGQEKFGGLRDGYYIHGQC--AIIMFDVTARLTYKNVP---TWHRDLCRVC 80
                 WD  G+E+     +           ++++D+T R +   V     W  +L ++ 
Sbjct: 47  TGLLNIWDFGGREEL--KFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLG 104

Query: 81  ENIPIVLCGNK 91
             IP++L GNK
Sbjct: 105 GKIPVILVGNK 115

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 36.2 bits (84), Expect = 0.003
 Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 2/104 (1%)

Query: 26  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 85
           KIR   WD  GQE +      +       +++FD+        VP W R +       P+
Sbjct: 50  KIRLNVWDFGGQEIYHATHQFFLTSRSLYLLVFDLRTGDEVSRVPYWLRQIKAFGGVSPV 109

Query: 86  VLCGNKVDVK--NRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 127
           +L G  +D       +K              + +S K+     +
Sbjct: 110 ILVGTHIDESCDEDILKKALNKKFPAIINDIHFVSCKNGKGIAE 153

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	186
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	99.98
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.98
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.98
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.97
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.97
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.97
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.97
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.97
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.97
PTZ00099	176	rab6; Provisional	99.97
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.97
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.97
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.96
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.96
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.96
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.96
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.96
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.96
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.96
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.96
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.96
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.95
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.95
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.95
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.95
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.95
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.95
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.95
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.95
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.95
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.95
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.95
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.95
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.95
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.94
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.94
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.94
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.94
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.94
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.94
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.94
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.94
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.94
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.94
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.94
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.94
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.94
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.94
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.94
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.93
PTZ00369	189	Ras-like protein; Provisional	99.93
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.93
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.93
PLN03110	216	Rab GTPase; Provisional	99.93
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.93
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.93
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.93
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.93
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.93
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.93
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.93
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.93
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.93
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.93
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.93
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.93
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.92
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.92
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.92
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.92
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.92
PLN03108	210	Rab family protein; Provisional	99.92
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.92
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.92
KOG0395	196	consensus Ras-related GTPase [General function pre	99.92
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.92
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.92
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.92
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.91
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.91
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.91
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.91
PLN03118	211	Rab family protein; Provisional	99.91
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.91
PLN00223	181	ADP-ribosylation factor; Provisional	99.91
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.91
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.91
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.9
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.9
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.9
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.9
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.9
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.9
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.9
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.89
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.89
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.89
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.88
PTZ00133	182	ADP-ribosylation factor; Provisional	99.88
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.88
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.88
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.88
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.88
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.88
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.88
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.87
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.86
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.86
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.86
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.86
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.86
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.85
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.85
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.85
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.85
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.85
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.85
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.84
PLN00023	334	GTP-binding protein; Provisional	99.84
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.83
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.83
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.81
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.81
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.8
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.78
KOG1673	205	consensus Ras GTPases [General function prediction	99.77
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.77
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.77
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.76
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.75
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.74
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.72
COG1100	219	GTPase SAR1 and related small G proteins [General	99.72
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.72
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.71
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.71
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.71
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.71
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.7
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.7
PRK15494	339	era GTPase Era; Provisional	99.68
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.68
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.66
PRK12299	335	obgE GTPase CgtA; Reviewed	99.66
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.65
PRK05433	600	GTP-binding protein LepA; Provisional	99.64
COG2229	187	Predicted GTPase [General function prediction only	99.64
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.62
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.62
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.62
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.61
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.61
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.6
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.6
PRK04213	201	GTP-binding protein; Provisional	99.59
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.59
PRK03003	472	GTP-binding protein Der; Reviewed	99.59
PRK03003	472	GTP-binding protein Der; Reviewed	99.57
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.57
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.57
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.57
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.56
CHL00189	742	infB translation initiation factor 2; Provisional	99.56
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.55
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.55
PRK12297	424	obgE GTPase CgtA; Reviewed	99.55
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.55
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.55
cd00881	189	GTP_translation_factor GTP translation factor fami	99.55
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.54
PRK05306	787	infB translation initiation factor IF-2; Validated	99.51
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.51
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.51
PRK12298	390	obgE GTPase CgtA; Reviewed	99.5
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.49
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.48
PRK10218	607	GTP-binding protein; Provisional	99.46
PRK11058	426	GTPase HflX; Provisional	99.46
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.46
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.45
PRK12296	500	obgE GTPase CgtA; Reviewed	99.45
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.45
PRK00093	435	GTP-binding protein Der; Reviewed	99.44
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.44
PRK12317	425	elongation factor 1-alpha; Reviewed	99.43
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.43
PRK00089	292	era GTPase Era; Reviewed	99.42
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.41
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.4
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.4
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.36
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.36
PRK00093	435	GTP-binding protein Der; Reviewed	99.35
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.34
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.34
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.34
PRK04004	586	translation initiation factor IF-2; Validated	99.33
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.33
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.33
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.33
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.33
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.31
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.31
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.31
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.29
COG1159	298	Era GTPase [General function prediction only]	99.29
PRK14845	1049	translation initiation factor IF-2; Provisional	99.25
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.25
KOG1145	683	consensus Mitochondrial translation initiation fac	99.23
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.22
PRK13351	687	elongation factor G; Reviewed	99.21
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.2
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.2
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.19
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.18
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.18
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.17
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.15
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.15
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.15
PLN00043	447	elongation factor 1-alpha; Provisional	99.14
PRK00098	298	GTPase RsgA; Reviewed	99.14
PRK12740	668	elongation factor G; Reviewed	99.13
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.12
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	99.11
PRK12736	394	elongation factor Tu; Reviewed	99.11
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.1
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.1
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.1
PRK12289	352	GTPase RsgA; Reviewed	99.08
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.08
PRK09866	741	hypothetical protein; Provisional	99.07
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.05
PRK12735	396	elongation factor Tu; Reviewed	99.05
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.03
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.03
COG0486	454	ThdF Predicted GTPase [General function prediction	99.03
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.01
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.0
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.0
PRK13768	253	GTPase; Provisional	98.97
COG1160	444	Predicted GTPases [General function prediction onl	98.97
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	98.96
COG1217	603	TypA Predicted membrane GTPase involved in stress	98.94
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	98.94
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.94
COG1160	444	Predicted GTPases [General function prediction onl	98.93
PRK12288	347	GTPase RsgA; Reviewed	98.93
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	98.93
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	98.9
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	98.89
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.87
PTZ00141	446	elongation factor 1- alpha; Provisional	98.86
CHL00071	409	tufA elongation factor Tu	98.85
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	98.85
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	98.84
PRK00049	396	elongation factor Tu; Reviewed	98.84
PLN03126	478	Elongation factor Tu; Provisional	98.82
PRK12739	691	elongation factor G; Reviewed	98.79
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	98.77
PLN03127	447	Elongation factor Tu; Provisional	98.77
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	98.73
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.72
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.72
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	98.7
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	98.69
COG1084	346	Predicted GTPase [General function prediction only	98.69
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.69
COG2262	411	HflX GTPases [General function prediction only]	98.67
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.65
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.62
PF09439	181	SRPRB: Signal recognition particle receptor beta s	98.55
KOG0082	354	consensus G-protein alpha subunit (small G protein	98.53
KOG0090	238	consensus Signal recognition particle receptor, be	98.5
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	98.49
PRK00007	693	elongation factor G; Reviewed	98.48
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.48
PRK13796	365	GTPase YqeH; Provisional	98.47
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	98.46
PRK07560	731	elongation factor EF-2; Reviewed	98.43
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	98.43
PRK09602	396	translation-associated GTPase; Reviewed	98.39
COG0536	369	Obg Predicted GTPase [General function prediction	98.39
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	98.38
COG0218	200	Predicted GTPase [General function prediction only	98.37
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	98.35
TIGR00101	199	ureG urease accessory protein UreG. This model rep	98.35
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.33
KOG3886	295	consensus GTP-binding protein [Signal transduction	98.33
COG1163	365	DRG Predicted GTPase [General function prediction	98.27
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.26
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	98.26
COG3276	447	SelB Selenocysteine-specific translation elongatio	98.25
PRK01889	356	GTPase RsgA; Reviewed	98.23
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.22
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	98.2
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	98.18
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	98.17
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	98.17
COG3596	296	Predicted GTPase [General function prediction only	98.16
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	98.14
PLN00116	843	translation elongation factor EF-2 subunit; Provis	98.11
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	98.1
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	98.09
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.07
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	98.04
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	98.04
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	98.02
PTZ00416	836	elongation factor 2; Provisional	97.98
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	97.93
COG1162	301	Predicted GTPases [General function prediction onl	97.92
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	97.81
KOG0461	522	consensus Selenocysteine-specific elongation facto	97.72
KOG0465	721	consensus Mitochondrial elongation factor [Transla	97.65
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	97.64
COG0050	394	TufB GTPases - translation elongation factors [Tra	97.57
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	97.51
KOG1143	591	consensus Predicted translation elongation factor	97.47
COG5258	527	GTPBP1 GTPase [General function prediction only]	97.44
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	97.43
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	97.42
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	97.37
KOG0464	753	consensus Elongation factor G [Translation, riboso	97.28
cd03110	179	Fer4_NifH_child This protein family's function is	97.25
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	97.17
KOG0099	379	consensus G protein subunit Galphas, small G prote	97.15
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	97.13
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	97.05
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	96.94
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	96.92
COG1161	322	Predicted GTPases [General function prediction onl	96.89
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	96.75
KOG0460	449	consensus Mitochondrial translation elongation fac	96.72
KOG0467	887	consensus Translation elongation factor 2/ribosome	96.69
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	96.61
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	96.58
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	96.51
KOG0466	466	consensus Translation initiation factor 2, gamma s	96.5
KOG3887	347	consensus Predicted small GTPase involved in nucle	96.41
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	96.39
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	96.33
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	96.23
PTZ00258	390	GTP-binding protein; Provisional	96.23
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	96.02
KOG2484	435	consensus GTPase [General function prediction only	95.99
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	95.73
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	95.62
PHA02518	211	ParA-like protein; Provisional	95.41
TIGR00064	272	ftsY signal recognition particle-docking protein F	95.1
KOG4273	418	consensus Uncharacterized conserved protein [Funct	95.09
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	95.0
PRK10416	318	signal recognition particle-docking protein FtsY;	94.92
KOG2423	572	consensus Nucleolar GTPase [General function predi	94.86
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	94.77
KOG0410	410	consensus Predicted GTP binding protein [General f	94.77
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	94.71
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	94.57
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	94.3
cd02036	179	MinD Bacterial cell division requires the formatio	94.13
PRK09601	364	GTP-binding protein YchF; Reviewed	94.13
COG1149	284	MinD superfamily P-loop ATPase containing an inser	94.02
PRK14974	336	cell division protein FtsY; Provisional	93.24
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	93.23
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	93.12
PF14331	266	ImcF-related_N: ImcF-related N-terminal domain	93.11
PRK13505	557	formate--tetrahydrofolate ligase; Provisional	92.98
COG5019	373	CDC3 Septin family protein [Cell division and chro	92.61
cd03111	106	CpaE_like This protein family consists of proteins	92.16
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	92.06
PF09419	168	PGP_phosphatase: Mitochondrial PGP phosphatase; In	91.39
KOG2486	320	consensus Predicted GTPase [General function predi	90.82
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	90.79
PRK00771	437	signal recognition particle protein Srp54; Provisi	90.7
TIGR03371	246	cellulose_yhjQ cellulose synthase operon protein Y	90.3
COG4963	366	CpaE Flp pilus assembly protein, ATPase CpaE [Intr	89.8
cd02117	212	NifH_like This family contains the NifH (iron prot	89.71
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	89.56
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	88.68
PRK13185	270	chlL protochlorophyllide reductase iron-sulfur ATP	88.25
TIGR00959	428	ffh signal recognition particle protein. This mode	87.81
cd03114	148	ArgK-like The function of this protein family is u	86.58
cd03115	173	SRP The signal recognition particle (SRP) mediates	86.14
TIGR01007	204	eps_fam capsular exopolysaccharide family. This mo	85.79
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	84.76
PF01656	195	CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai	84.53
PRK13849	231	putative crown gall tumor protein VirC1; Provision	84.07
COG0523	323	Putative GTPases (G3E family) [General function pr	82.75
cd02032	267	Bchl_like This family of proteins contains bchL an	81.31
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	81.2
cd03112	158	CobW_like The function of this protein family is u	81.19
cd02037	169	MRP-like MRP (Multiple Resistance and pH adaptatio	81.05
PRK10867	433	signal recognition particle protein; Provisional	80.99
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	80.93
TIGR01968	261	minD_bact septum site-determining protein MinD. Th	80.74
cd02033	329	BchX Chlorophyllide reductase converts chlorophyll	80.62
CHL00175	281	minD septum-site determining protein; Validated	80.06

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.2e-35  Score=214.17  Aligned_cols=145  Identities=32%  Similarity=0.521  Sum_probs=132.1

Q ss_pred             CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-
Q 029854            2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-   80 (186)
Q Consensus         2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-   80 (186)
                      .+...|..|||+||..+++.++|+.+++++|||+||++|+.+..+||++|+|+|+|||+++..||..+..|+.++.++. 
T Consensus        33 ~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~  112 (205)
T KOG0084|consen   33 TFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYAS  112 (205)
T ss_pred             CcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhcc
Confidence            4678899999999999999999999999999999999999999999999999999999999999999999999999987 


Q ss_pred             CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCc-EEEeccCCCCCchHHHHHHHHHHhCCCCccccc
Q 029854           81 ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQ-YYEISAKSNYNFEKPFLYLARKLAGDPNLHFVE  146 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~-~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~~~  146 (186)
                      .+.|.++||||||+.+ +.+..+ ...++.+++++ ++++|||++.||++.|..|+..+.+........
T Consensus       113 ~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~~~~~~~~~  181 (205)
T KOG0084|consen  113 ENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTLAKELKQRKGLHVKW  181 (205)
T ss_pred             CCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHHHHHHHHhcccCCCC
Confidence            5789999999999986 555544 56899999999 999999999999999999999998775544333

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.3e-34  Score=206.58  Aligned_cols=140  Identities=31%  Similarity=0.485  Sum_probs=127.7

Q ss_pred             CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC
Q 029854            2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE   81 (186)
Q Consensus         2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~   81 (186)
                      .+|..|.+|||+||.++++.+.+..++|+||||+||++|+.+..+|+++|.++|+|||+++..||++..+|++.+++...
T Consensus        46 ~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~g  125 (221)
T KOG0094|consen   46 KFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERG  125 (221)
T ss_pred             hhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccC
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999863


Q ss_pred             --CCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCC
Q 029854           82 --NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN  141 (186)
Q Consensus        82 --~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  141 (186)
                        +.-++|||||.||.+ +++..+ ....+++++..|+++||+.|.||+++|..++..+.+...
T Consensus       126 s~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l~~~~~  189 (221)
T KOG0094|consen  126 SDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAALPGMEV  189 (221)
T ss_pred             CCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhccCccc
Confidence              477889999999985 555544 457889999999999999999999999999988876643

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=6.3e-33  Score=208.73  Aligned_cols=180  Identities=77%  Similarity=1.224  Sum_probs=159.6

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN   82 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~   82 (186)
                      +...|.||+|.++..+.+.+++..+.+.||||+|+++|..++..++++++++|+|||++++.||+.+..|+..+.+.+.+
T Consensus        20 f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~   99 (200)
T smart00176       20 FEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCEN   99 (200)
T ss_pred             CCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCC
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999988788


Q ss_pred             CCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCCcccccCCCCCCCccccCHHHH
Q 029854           83 IPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  162 (186)
Q Consensus        83 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (186)
                      .|++|||||+|+..+.+..+...++...++.|++|||++|.||.++|.+|++.+.+.....+...+...+++...+....
T Consensus       100 ~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (200)
T smart00176      100 IPIVLCGNKVDVKDRKVKAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALA  179 (200)
T ss_pred             CCEEEEEECcccccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhcccceeccCcccCCcccccChhhh
Confidence            99999999999977666666667888889999999999999999999999999988777777777888888878888888


Q ss_pred             HHHHHHHHHHhCCCCCCCcc
Q 029854          163 QQHEAELAAAASQPLPDDDD  182 (186)
Q Consensus       163 ~~~~~~~~~~~~~~~p~~~~  182 (186)
                      ...++.++.+..-..|..+|
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~  199 (200)
T smart00176      180 AQYEHDLEVAATTALPDEDD  199 (200)
T ss_pred             hhhhHHHHHHHHhcCCCCCC
Confidence            88888777776555666554

Ran is involved in the active transport of proteins through nuclear pores.

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.6e-33  Score=205.90  Aligned_cols=141  Identities=28%  Similarity=0.539  Sum_probs=130.6

Q ss_pred             CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-
Q 029854            2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-   80 (186)
Q Consensus         2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-   80 (186)
                      .+...|..|||+||..+++..++..+.+++|||+||++|+.+.+.||++|.++++|||+++..||+++..|++.+.+.. 
T Consensus        36 ~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~  115 (207)
T KOG0078|consen   36 SFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHAS  115 (207)
T ss_pred             cCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCC
Confidence            3567899999999999999999999999999999999999999999999999999999999999999999999999986 


Q ss_pred             CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCCc
Q 029854           81 ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNL  142 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~  142 (186)
                      +++|++|||||+|+.. +++..+ ..++|.++|+.++|+||++|.||+++|..|++.+......
T Consensus       116 ~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~~i~~k~~~  179 (207)
T KOG0078|consen  116 DDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLARDILQKLED  179 (207)
T ss_pred             CCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHHHHHHhhcch
Confidence            4899999999999986 666655 5689999999999999999999999999999999875443

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=6.2e-32  Score=206.23  Aligned_cols=181  Identities=96%  Similarity=1.504  Sum_probs=164.6

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN   82 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~   82 (186)
                      +...|.||+|.++....+..++..+.+.||||+|+++|..++..++++++++|+|||++++.||+.+..|+..+.+.+.+
T Consensus        38 f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~  117 (219)
T PLN03071         38 FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN  117 (219)
T ss_pred             CCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC
Confidence            45679999999999988888888999999999999999999999999999999999999999999999999999988888


Q ss_pred             CCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCCcccccCCCCCCCccccCHHHH
Q 029854           83 IPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  162 (186)
Q Consensus        83 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (186)
                      .|++|||||+|+.++.+..+...+++..+++|++|||++|.||+++|.+|++.+.+.....+...+...++++..+....
T Consensus       118 ~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (219)
T PLN03071        118 IPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (219)
T ss_pred             CcEEEEEEchhhhhccCCHHHHHHHHhcCCEEEEcCCCCCCCHHHHHHHHHHHHHcCcchhcccccccCCcccCCCHHHH
Confidence            99999999999986665555557778888999999999999999999999999988877777888888899999999999


Q ss_pred             HHHHHHHHHHhCCCCCCCccc
Q 029854          163 QQHEAELAAAASQPLPDDDDD  183 (186)
Q Consensus       163 ~~~~~~~~~~~~~~~p~~~~~  183 (186)
                      +..++.++.++..+.+++++.
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~  218 (219)
T PLN03071        198 QQHEAELAAAAAQPLPDDDDD  218 (219)
T ss_pred             HHHHHHHHHHHhcCCCCCCCC
Confidence            999999999998888877653

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.7e-32  Score=196.18  Aligned_cols=140  Identities=30%  Similarity=0.495  Sum_probs=127.3

Q ss_pred             CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-
Q 029854            2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-   80 (186)
Q Consensus         2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-   80 (186)
                      .|+....||||.-|..+++.++...+.|.||||+||++|..+.++||++|+++|+|||+++.+||..++.|++++++.. 
T Consensus        29 ~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~  108 (200)
T KOG0092|consen   29 QFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQAS  108 (200)
T ss_pred             ccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCC
Confidence            4566679999999999999999999999999999999999999999999999999999999999999999999998875 


Q ss_pred             CCCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCC
Q 029854           81 ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN  141 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  141 (186)
                      ++.-+.|||||+||.+ +.+.. +...++...+..|+++|||+|.||+++|..|.+.+.....
T Consensus       109 ~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~~  171 (200)
T KOG0092|consen  109 PNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIAEKLPCSDP  171 (200)
T ss_pred             CCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHHHhccCccc
Confidence            4566778999999987 55554 4668999999999999999999999999999999987643

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.98  E-value=7e-32  Score=193.79  Aligned_cols=140  Identities=31%  Similarity=0.588  Sum_probs=128.0

Q ss_pred             CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-
Q 029854            2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-   80 (186)
Q Consensus         2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-   80 (186)
                      +++.+|..|||.+|..+.+.++++.+.++||||+||++|.++.-.+|++||+|++|||++++.||+.+..|.+++.... 
T Consensus        33 kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~  112 (210)
T KOG0394|consen   33 KFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQAS  112 (210)
T ss_pred             HHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcC
Confidence            3677899999999999999999999999999999999999999999999999999999999999999999999988764 


Q ss_pred             ----CCCCEEEEEeCCCCCC---cccChH-HHHHHHHcC-CcEEEeccCCCCCchHHHHHHHHHHhCCCC
Q 029854           81 ----ENIPIVLCGNKVDVKN---RQVKAK-QVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKLAGDPN  141 (186)
Q Consensus        81 ----~~~p~ilv~nK~Dl~~---~~~~~~-~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  141 (186)
                          ..-|+||+|||+|+.+   ++++.+ ++.||..++ ++|+|+|||.+.||.++|..+++..+....
T Consensus       113 ~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~E~  182 (210)
T KOG0394|consen  113 PQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIARRALANED  182 (210)
T ss_pred             CCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccHHHHHHHHHHHHHhccc
Confidence                3589999999999975   667665 679998774 899999999999999999999999987653

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.98  E-value=1e-31  Score=189.04  Aligned_cols=145  Identities=31%  Similarity=0.462  Sum_probs=131.9

Q ss_pred             CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-
Q 029854            2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-   80 (186)
Q Consensus         2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-   80 (186)
                      .+|-.+..|||+||..+.+.++|.++++.||||+||++|+.+..+||++|.|+|+|||++.+++|..+..|++++.-++ 
T Consensus        35 ~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Yst  114 (209)
T KOG0080|consen   35 TFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYST  114 (209)
T ss_pred             ccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcC
Confidence            3566777889999999999999999999999999999999999999999999999999999999999999999999987 


Q ss_pred             -CCCCEEEEEeCCCCC-CcccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCCccccc
Q 029854           81 -ENIPIVLCGNKVDVK-NRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVE  146 (186)
Q Consensus        81 -~~~p~ilv~nK~Dl~-~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~~~  146 (186)
                       ++...++||||+|.. ++.+..+ ..+|++++++-++++||++..||+.+|++++.+|.+.+.+-..+
T Consensus       115 n~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~FeelveKIi~tp~l~~~~  183 (209)
T KOG0080|consen  115 NPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEELVEKIIETPSLWEEG  183 (209)
T ss_pred             CccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHHHHHHhcCcchhhcc
Confidence             467778999999987 5666654 67999999999999999999999999999999999988765443

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=3.3e-32  Score=195.85  Aligned_cols=139  Identities=31%  Similarity=0.513  Sum_probs=128.1

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      |...|..|||++|..+.+++++++++|++|||+||+.|++.+++||++|.|+|||||+++++||..+..|+..+++.. +
T Consensus        31 F~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~  110 (216)
T KOG0098|consen   31 FQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNE  110 (216)
T ss_pred             ccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCC
Confidence            556788999999999999999999999999999999999999999999999999999999999999999999999984 8


Q ss_pred             CCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCC
Q 029854           82 NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN  141 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  141 (186)
                      |.-++|+|||+||.. +.+..+ ...||+++++.++++||+++.||+++|......|....+
T Consensus       111 NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nta~~Iy~~~q  172 (216)
T KOG0098|consen  111 NMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINTAKEIYRKIQ  172 (216)
T ss_pred             CcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            999999999999984 455544 669999999999999999999999999999999876543

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=5.9e-32  Score=187.90  Aligned_cols=139  Identities=30%  Similarity=0.504  Sum_probs=130.1

Q ss_pred             CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC
Q 029854            2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE   81 (186)
Q Consensus         2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~   81 (186)
                      .++.-|+.|||+||..+++.++|..+.|+||||+|+++|+.+...|+++.+++|+|||+++.+||.++++|+++++..++
T Consensus        32 tFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncd  111 (198)
T KOG0079|consen   32 TFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCD  111 (198)
T ss_pred             ccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCc
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEeCCCCCCccc--ChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029854           82 NIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                      ..|-++||||+|++++.+  ..+++.|+...++.+|++||+.+.|++..|.-|.+++++..
T Consensus       112 sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~qvl~~k  172 (198)
T KOG0079|consen  112 SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITKQVLQAK  172 (198)
T ss_pred             cccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHHHHHHH
Confidence            999999999999997553  34477999999999999999999999999999999887643

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.2e-31  Score=184.87  Aligned_cols=139  Identities=24%  Similarity=0.472  Sum_probs=128.2

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...|.+|+|++|..+++--+.+++.+++|||+|+++|+.+...++++|+++|+|||++|.+||..+..|+..+..++ .
T Consensus        46 Ft~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~  125 (193)
T KOG0093|consen   46 FTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWD  125 (193)
T ss_pred             cccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeecc
Confidence            456789999999999998888899999999999999999999999999999999999999999999999999999997 7


Q ss_pred             CCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCC
Q 029854           82 NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN  141 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  141 (186)
                      +.|+|+||||||+.+ +.+..+ .+.++..+|+.||++|||.+.|++++|..++..|..+.+
T Consensus       126 naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~~Ic~kms  187 (193)
T KOG0093|consen  126 NAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLVDIICDKMS  187 (193)
T ss_pred             CceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHHHHHHHHhh
Confidence            899999999999984 556555 568999999999999999999999999999999977654

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.4e-30  Score=191.02  Aligned_cols=138  Identities=32%  Similarity=0.501  Sum_probs=127.3

Q ss_pred             CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-
Q 029854            2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-   80 (186)
Q Consensus         2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-   80 (186)
                      .+..+..+|||++|...++.++++.++.+||||+||++|+.+...||++|.|+++|||++++.+|+.+.+|+.+++... 
T Consensus        38 EF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad  117 (222)
T KOG0087|consen   38 EFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHAD  117 (222)
T ss_pred             ccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCC
Confidence            3567889999999999999999999999999999999999999999999999999999999999999999999999886 


Q ss_pred             CCCCEEEEEeCCCCCC-cc-cChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           81 ENIPIVLCGNKVDVKN-RQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~-~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      +++++++||||+||.+ +. ..++...++.+.+..++++||..+.|++.+|..++..|...
T Consensus       118 ~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~  178 (222)
T KOG0087|consen  118 SNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVLTEIYKI  178 (222)
T ss_pred             CCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHHHHHHHHHHH
Confidence            7899999999999986 33 34457789999999999999999999999999999888754

>cd04120 Rab12 Rab12 subfamily

Probab=99.97  E-value=5.8e-30  Score=192.91  Aligned_cols=139  Identities=28%  Similarity=0.547  Sum_probs=123.3

Q ss_pred             CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-
Q 029854            2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-   80 (186)
Q Consensus         2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-   80 (186)
                      .+...|.||+|.+|..+.+.+++..+.++||||+|+++|..++..++++|+++|+|||++++.||+.+..|+..+.+.. 
T Consensus        24 ~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~  103 (202)
T cd04120          24 TFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS  103 (202)
T ss_pred             CCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC
Confidence            3567789999999999999999999999999999999999999999999999999999999999999999999887765 


Q ss_pred             CCCCEEEEEeCCCCCC-cccChH-HHHHHHHc-CCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029854           81 ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                      .+.|+++||||+|+.+ +.+... ..+++++. ++.|+++||++|.||+++|.++++.+....
T Consensus       104 ~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~~~~~~~  166 (202)
T cd04120         104 EDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM  166 (202)
T ss_pred             CCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhC
Confidence            5799999999999964 545444 45677775 789999999999999999999999886543

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04121 Rab40 Rab40 subfamily

Probab=99.97  E-value=5.5e-30  Score=191.23  Aligned_cols=138  Identities=21%  Similarity=0.469  Sum_probs=125.4

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN   82 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~   82 (186)
                      ++..|.||+|.++....+.+++..+.++||||+|+++|..++..++++||++|||||++++.||+++..|++.+.+..++
T Consensus        31 ~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~  110 (189)
T cd04121          31 TESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPG  110 (189)
T ss_pred             CCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC
Confidence            56778899999999888999999999999999999999999999999999999999999999999999999999887789


Q ss_pred             CCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029854           83 IPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus        83 ~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                      .|++|||||+|+.+ +.+..+ ...+++.++++|++|||++|.||+++|.++++.+....
T Consensus       111 ~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~~i~~~~  170 (189)
T cd04121         111 VPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVLMRH  170 (189)
T ss_pred             CCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHhc
Confidence            99999999999974 444444 56888889999999999999999999999999887543

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04133 Rop_like Rop subfamily

Probab=99.97  E-value=7.5e-30  Score=188.54  Aligned_cols=136  Identities=24%  Similarity=0.392  Sum_probs=119.5

Q ss_pred             CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhH-HHHHHHHHhhc
Q 029854            2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVC   80 (186)
Q Consensus         2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i-~~~~~~~~~~~   80 (186)
                      .+..+|.||+|..+ .+.+.+++..+.++||||+|+++|..++..++++|+++|+|||++++.||+.+ ..|+..+.+..
T Consensus        25 ~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~  103 (176)
T cd04133          25 KFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA  103 (176)
T ss_pred             CCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC
Confidence            35678999999776 45678899999999999999999999999999999999999999999999998 68999998877


Q ss_pred             CCCCEEEEEeCCCCCCc-----------ccCh-HHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           81 ENIPIVLCGNKVDVKNR-----------QVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~~-----------~~~~-~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      ++.|++|||||+|+.+.           .+.. +..++++.+++ .|++|||++|.||+++|..+++.+.+
T Consensus       104 ~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~~~  174 (176)
T cd04133         104 PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVVLQ  174 (176)
T ss_pred             CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHHhc
Confidence            78999999999999643           2333 35688888887 59999999999999999999998744

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>PTZ00099 rab6; Provisional

Probab=99.97  E-value=2e-29  Score=186.29  Aligned_cols=141  Identities=30%  Similarity=0.484  Sum_probs=125.3

Q ss_pred             CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-
Q 029854            2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-   80 (186)
Q Consensus         2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-   80 (186)
                      .+...|.||+|.++..+.+.+++..+.+.||||+|+++|..++..++++||++|+|||++++.||+.+..|+..+.... 
T Consensus         4 ~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~   83 (176)
T PTZ00099          4 TFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG   83 (176)
T ss_pred             CcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence            4677899999999999999999999999999999999999999999999999999999999999999999999987754 


Q ss_pred             CCCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCCc
Q 029854           81 ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNL  142 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~  142 (186)
                      .+.|++||+||+|+.+ +.+.. +...++..++..++++||++|.||+++|.+|++.+.+.+++
T Consensus        84 ~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~  147 (176)
T PTZ00099         84 KDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS  147 (176)
T ss_pred             CCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence            5789999999999974 44444 35577778888999999999999999999999999875543

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=7.3e-31  Score=179.73  Aligned_cols=138  Identities=25%  Similarity=0.490  Sum_probs=126.0

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...+++|+|+||..+.+.+++.++++++|||+||++|++....||++||+.+++||+.++.||++++.|+.++.++. .
T Consensus        23 l~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~  102 (192)
T KOG0083|consen   23 LAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKE  102 (192)
T ss_pred             ecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHh
Confidence            345678999999999999999999999999999999999999999999999999999999999999999999999986 5


Q ss_pred             CCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029854           82 NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                      .+.+.++|||||+.. +.+..+ ..++++.+++|++++||++|.|++-.|-.+++.+.+..
T Consensus       103 ~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k~~  163 (192)
T KOG0083|consen  103 AVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKKLK  163 (192)
T ss_pred             hHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHHhc
Confidence            678899999999964 555544 67899999999999999999999999999999987653

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.97  E-value=2.8e-29  Score=186.48  Aligned_cols=134  Identities=21%  Similarity=0.330  Sum_probs=119.4

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhH-HHHHHHHHhhcC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i-~~~~~~~~~~~~   81 (186)
                      +...|.||+|.++. +.+.+++..+.++||||+|+++|..++..++++|+++|+|||++++.||+.+ ..|++.+.+..+
T Consensus        30 f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~  108 (182)
T cd04172          30 FPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP  108 (182)
T ss_pred             CCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC
Confidence            56789999997775 6788899999999999999999999999999999999999999999999997 799999998888


Q ss_pred             CCCEEEEEeCCCCCC-------------cccCh-HHHHHHHHcCC-cEEEeccCCCCC-chHHHHHHHHHHh
Q 029854           82 NIPIVLCGNKVDVKN-------------RQVKA-KQVTFHRKKNL-QYYEISAKSNYN-FEKPFLYLARKLA  137 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-------------~~~~~-~~~~~~~~~~~-~~~~~Sa~~~~g-i~~l~~~l~~~i~  137 (186)
                      +.|++|||||+||.+             +.+.. +..++++++++ +|++|||++|.| |+++|..+++.++
T Consensus       109 ~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         109 NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV  180 (182)
T ss_pred             CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHHHh
Confidence            899999999999964             22443 46689999995 899999999998 9999999998654

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.6e-29  Score=182.41  Aligned_cols=183  Identities=73%  Similarity=1.164  Sum_probs=173.6

Q ss_pred             CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC
Q 029854            2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE   81 (186)
Q Consensus         2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~   81 (186)
                      .|...|.||+|++.....+..+.+.+++..|||+|++.+..+...|+-.+.+.|++||++.+-++.++.+|.+.+.+.+.
T Consensus        34 eFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~  113 (216)
T KOG0096|consen   34 EFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRE  113 (216)
T ss_pred             cceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhc
Confidence            36678999999999999888888899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCCcccccCCCCCCCccccCHHH
Q 029854           82 NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAA  161 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  161 (186)
                      ++|++++|||.|...+++..+...+.+..++.|+++||+++.|.+.-|.++++.+...+.+.+..++.+.|++.+.+...
T Consensus       114 NiPiv~cGNKvDi~~r~~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~LarKl~G~p~Lefva~paLaPpev~~d~~~  193 (216)
T KOG0096|consen  114 NIPIVLCGNKVDIKARKVKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLARKLTGDPSLEFVAMPALAPPEVIMDYWL  193 (216)
T ss_pred             CCCeeeeccceeccccccccccceeeecccceeEEeecccccccccchHHHhhhhcCCCCeEEEeccccCCCeeeccchh
Confidence            99999999999999888777777778888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCCccccc
Q 029854          162 QQQHEAELAAAASQPLPDDDDDAF  185 (186)
Q Consensus       162 ~~~~~~~~~~~~~~~~p~~~~~~~  185 (186)
                      .++++..+..+++.|+|+||+ +|
T Consensus       194 ~~q~e~dl~~a~t~~lp~ed~-~~  216 (216)
T KOG0096|consen  194 QRQHEHDLAEAQTTALPDEDD-KL  216 (216)
T ss_pred             hHHHHHHHHHHhccCCCcccc-cC
Confidence            999999999999999999998 43

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.96  E-value=1.6e-28  Score=188.25  Aligned_cols=137  Identities=17%  Similarity=0.271  Sum_probs=121.4

Q ss_pred             CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhH-HHHHHHHHhhc
Q 029854            2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVC   80 (186)
Q Consensus         2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i-~~~~~~~~~~~   80 (186)
                      .++..|.||+|.++. +.+.+++..+.++||||+|+++|..++..++++|+++|+|||++++.||+.+ ..|+..+.+..
T Consensus        37 ~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~  115 (232)
T cd04174          37 CYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC  115 (232)
T ss_pred             CCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC
Confidence            356789999998875 4678899999999999999999999999999999999999999999999985 79999999887


Q ss_pred             CCCCEEEEEeCCCCCC-------------cccCh-HHHHHHHHcCC-cEEEeccCCCC-CchHHHHHHHHHHhCC
Q 029854           81 ENIPIVLCGNKVDVKN-------------RQVKA-KQVTFHRKKNL-QYYEISAKSNY-NFEKPFLYLARKLAGD  139 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~-------------~~~~~-~~~~~~~~~~~-~~~~~Sa~~~~-gi~~l~~~l~~~i~~~  139 (186)
                      ++.|++|||||+|+.+             +.+.. +..++++.+++ .|++|||++|. ||+++|..++..+.+.
T Consensus       116 ~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         116 PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHHh
Confidence            8899999999999963             33444 46789999998 69999999998 8999999999988764

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01875 RhoG RhoG subfamily

Probab=99.96  E-value=1.8e-28  Score=183.45  Aligned_cols=137  Identities=26%  Similarity=0.443  Sum_probs=118.5

Q ss_pred             CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhc
Q 029854            2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVC   80 (186)
Q Consensus         2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~   80 (186)
                      .+...|.||+|.++. +.+.+++..+.++||||+|+++|..++..++++||++|+|||++++.||+.+. .|+..+.+..
T Consensus        27 ~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~  105 (191)
T cd01875          27 AFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC  105 (191)
T ss_pred             CCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC
Confidence            356789999997664 45678999999999999999999999999999999999999999999999996 6998887776


Q ss_pred             CCCCEEEEEeCCCCCCcc-------------cC-hHHHHHHHHcC-CcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           81 ENIPIVLCGNKVDVKNRQ-------------VK-AKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~~~-------------~~-~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      ++.|++|||||+||.+..             +. .+...++++++ ++|+++||++|.||+++|.++++.+...
T Consensus       106 ~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~~  179 (191)
T cd01875         106 PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLNP  179 (191)
T ss_pred             CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhcc
Confidence            789999999999996421             22 23557888888 5899999999999999999999988653

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04131 Rnd Rnd subfamily

Probab=99.96  E-value=1.9e-28  Score=181.46  Aligned_cols=134  Identities=20%  Similarity=0.314  Sum_probs=118.7

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhH-HHHHHHHHhhcC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i-~~~~~~~~~~~~   81 (186)
                      ++..|.||+|.++. +.+.+++..+.++||||+|+++|..++..++++|+++|+|||++++.||+.+ ..|+..+.+.++
T Consensus        26 f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~  104 (178)
T cd04131          26 YPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP  104 (178)
T ss_pred             CCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC
Confidence            56789999998775 6788899999999999999999999999999999999999999999999996 799999998888


Q ss_pred             CCCEEEEEeCCCCCC-------------cccCh-HHHHHHHHcCC-cEEEeccCCCCC-chHHHHHHHHHHh
Q 029854           82 NIPIVLCGNKVDVKN-------------RQVKA-KQVTFHRKKNL-QYYEISAKSNYN-FEKPFLYLARKLA  137 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-------------~~~~~-~~~~~~~~~~~-~~~~~Sa~~~~g-i~~l~~~l~~~i~  137 (186)
                      +.|++|||||+||.+             +.+.. +..++++++++ +|++|||++|.| |+++|..+++..+
T Consensus       105 ~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         105 NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATMACL  176 (178)
T ss_pred             CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHHHHh
Confidence            999999999999963             12443 46689999996 799999999995 9999999998654

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.96  E-value=8e-28  Score=176.05  Aligned_cols=140  Identities=83%  Similarity=1.350  Sum_probs=126.6

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN   82 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~   82 (186)
                      +...|.||+|.++....+..++..+.+.+|||+|++.+..++..+++++|++|+|||++++.||+.+..|+..+.+.+.+
T Consensus        25 ~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~  104 (166)
T cd00877          25 FEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGN  104 (166)
T ss_pred             CCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC
Confidence            45678999999999988888999999999999999999999999999999999999999999999999999999988778


Q ss_pred             CCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCCc
Q 029854           83 IPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNL  142 (186)
Q Consensus        83 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~  142 (186)
                      .|+++|+||+|+.++.+..+..++++..+++++++||++|.|++++|.+|++.+.+.+..
T Consensus       105 ~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~~  164 (166)
T cd00877         105 IPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLGNPNL  164 (166)
T ss_pred             CcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHHHhcccc
Confidence            999999999999866665566677777788999999999999999999999999876543

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04128 Spg1 Spg1p

Probab=99.96  E-value=5.7e-28  Score=179.45  Aligned_cols=138  Identities=21%  Similarity=0.281  Sum_probs=119.8

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC-
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~-   81 (186)
                      +...|.||+|.++..+.+.+++..+.+++|||+|+++|..++..++++|+++++|||++++.||+++..|+..+.+..+ 
T Consensus        25 f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~  104 (182)
T cd04128          25 FDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKT  104 (182)
T ss_pred             CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC
Confidence            4567999999999988999999999999999999999999999999999999999999999999999999999987654 


Q ss_pred             CCCEEEEEeCCCCCCc-------ccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCC
Q 029854           82 NIPIVLCGNKVDVKNR-------QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN  141 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~-------~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  141 (186)
                      ..| ++||||+|+...       ....+..++++..+++++++||++|.|++++|.++++.+.+.+.
T Consensus       105 ~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~~~~  170 (182)
T cd04128         105 AIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKAFDLPL  170 (182)
T ss_pred             CCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Confidence            455 688999999521       12233456788888999999999999999999999999987554

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.96  E-value=5.2e-27  Score=178.47  Aligned_cols=181  Identities=76%  Similarity=1.230  Sum_probs=164.5

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN   82 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~   82 (186)
                      +...|.||+|.++....+..+++.+.+++|||+|+++|..++..+++.++++|+|||+++..+|..+..|+..+.+...+
T Consensus        34 ~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~  113 (215)
T PTZ00132         34 FEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCEN  113 (215)
T ss_pred             CCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC
Confidence            45679999999999999988999999999999999999999999999999999999999999999999999999887788


Q ss_pred             CCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCCcccccCCCCCCCccccCHHHH
Q 029854           83 IPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  162 (186)
Q Consensus        83 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (186)
                      .|+++++||+|+.++.+..+...++...++.++++||++|.|++++|.++++.+...+..-....+...+.+..++....
T Consensus       114 ~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~  193 (215)
T PTZ00132        114 IPIVLVGNKVDVKDRQVKARQITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELV  193 (215)
T ss_pred             CCEEEEEECccCccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHH
Confidence            99999999999976655555567777788999999999999999999999999999988888888887788889999999


Q ss_pred             HHHHHHHHHHhCCCCCCCccc
Q 029854          163 QQHEAELAAAASQPLPDDDDD  183 (186)
Q Consensus       163 ~~~~~~~~~~~~~~~p~~~~~  183 (186)
                      +.+...+++.+..|.|+++|+
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~  214 (215)
T PTZ00132        194 AQAEKELQAAANVPLPDDDDD  214 (215)
T ss_pred             HHHHHHHHHHhhCCCCCCcCC
Confidence            999999999999999988764

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.96  E-value=3.7e-29  Score=176.60  Aligned_cols=137  Identities=26%  Similarity=0.481  Sum_probs=121.5

Q ss_pred             CCccccccceEEEEEEEEEE-CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-
Q 029854            3 VSVWGKATIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-   80 (186)
                      +..-..||+|+||+.+-+.+ .|..++|+||||+||++|+++.++||+++-|+++|||++|+.||+.+..|..+...+. 
T Consensus        33 faelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q  112 (213)
T KOG0091|consen   33 FAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQ  112 (213)
T ss_pred             ccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcC
Confidence            34456899999999988877 6888999999999999999999999999999999999999999999999999987765 


Q ss_pred             -CCCC-EEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           81 -ENIP-IVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        81 -~~~p-~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                       +..+ +.+||.|+||.. +++..+ +.++++.+++.++++||++|.||++.|..+.+.+...
T Consensus       113 ~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~mlaqeIf~~  175 (213)
T KOG0091|consen  113 GPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDMLAQEIFQA  175 (213)
T ss_pred             CCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHHHHHHHHHH
Confidence             4444 569999999984 666655 6689999999999999999999999999999888653

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=8.5e-29  Score=173.13  Aligned_cols=139  Identities=30%  Similarity=0.507  Sum_probs=125.6

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      ++-+..-|||++|.++.+++.++.++++||||+||++|++..+.||++|-+.++|||+++++||..+..|+..++... +
T Consensus        34 fkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~  113 (214)
T KOG0086|consen   34 FKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASP  113 (214)
T ss_pred             hcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCC
Confidence            344566799999999999999999999999999999999999999999999999999999999999999999999876 6


Q ss_pred             CCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCC
Q 029854           82 NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN  141 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  141 (186)
                      ++-++++|||.||.+ +++... ..+|+.++.+.++++||++|+|++++|-..++.|+.+-+
T Consensus       114 nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~tIl~kIE  175 (214)
T KOG0086|consen  114 NIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIE  175 (214)
T ss_pred             cEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHHHHHHHHHh
Confidence            788899999999985 555544 568999999999999999999999999999999876643

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.95  E-value=3.1e-27  Score=174.44  Aligned_cols=133  Identities=20%  Similarity=0.325  Sum_probs=114.5

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhcC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCE   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~~   81 (186)
                      +...|.||+|.++. +.+.+++..+.++||||+|+++|..++..++++|+++|+|||++++.||+.+. .|+..+....+
T Consensus        26 f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~  104 (175)
T cd01874          26 FPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP  104 (175)
T ss_pred             CCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC
Confidence            55789999998775 46778899999999999999999999999999999999999999999999996 59998887767


Q ss_pred             CCCEEEEEeCCCCCCc-------------ccChH-HHHHHHHcC-CcEEEeccCCCCCchHHHHHHHHHH
Q 029854           82 NIPIVLCGNKVDVKNR-------------QVKAK-QVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~-------------~~~~~-~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      +.|++|||||+|+.+.             .+..+ ..++++..+ ..|++|||++|.|++++|+.+++..
T Consensus       105 ~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~~  174 (175)
T cd01874         105 KTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence            8999999999998642             23333 446777776 6899999999999999999998754

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.95  E-value=2.2e-27  Score=178.11  Aligned_cols=131  Identities=18%  Similarity=0.334  Sum_probs=109.7

Q ss_pred             CCccccccceE-EEEEEE--------EEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HH
Q 029854            3 VSVWGKATIGV-EVHPLD--------FFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TW   72 (186)
Q Consensus         3 ~~~~~~~Tig~-~~~~~~--------~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~   72 (186)
                      +...|.||+|. +.+...        ..+++..+.++||||+|++.  .++..++++|+++|+|||++++.||+.+. .|
T Consensus        33 f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w  110 (195)
T cd01873          33 LLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMW  110 (195)
T ss_pred             CccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--hhhcccCCCCCEEEEEEECCChhHHHHHHHHH
Confidence            35678999984 433322        25689999999999999976  35677899999999999999999999996 69


Q ss_pred             HHHHHhhcCCCCEEEEEeCCCCCC--------------------cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHH
Q 029854           73 HRDLCRVCENIPIVLCGNKVDVKN--------------------RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLY  131 (186)
Q Consensus        73 ~~~~~~~~~~~p~ilv~nK~Dl~~--------------------~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  131 (186)
                      ++.+....++.|+++||||+||.+                    +.+.. +..+++++++++|++|||++|.||+++|..
T Consensus       111 ~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~  190 (195)
T cd01873         111 YPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDN  190 (195)
T ss_pred             HHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHH
Confidence            999988777899999999999863                    33443 366899999999999999999999999999


Q ss_pred             HHHH
Q 029854          132 LARK  135 (186)
Q Consensus       132 l~~~  135 (186)
                      +++.
T Consensus       191 ~~~~  194 (195)
T cd01873         191 AIRA  194 (195)
T ss_pred             HHHh
Confidence            9864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2.9e-28  Score=171.46  Aligned_cols=137  Identities=31%  Similarity=0.532  Sum_probs=121.1

Q ss_pred             CCCccccccceEEEEEEEEEEC---------CeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHH
Q 029854            2 NVSVWGKATIGVEVHPLDFFTN---------CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTW   72 (186)
Q Consensus         2 ~~~~~~~~Tig~~~~~~~~~~~---------~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~   72 (186)
                      .+..+.++|+|+||..+.+..+         +.++.++||||+||++|+++...++++|-+++++||+++..||.+++.|
T Consensus        33 ~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnW  112 (219)
T KOG0081|consen   33 KFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNW  112 (219)
T ss_pred             cccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHH
Confidence            4677899999999999988773         3469999999999999999999999999999999999999999999999


Q ss_pred             HHHHHh--hcCCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           73 HRDLCR--VCENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        73 ~~~~~~--~~~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      +.+++.  ++.+..++++|||+||.+ ++++.. ...++.++++||+++||-+|.||++..+.|+..+.+
T Consensus       113 lSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv~kave~LldlvM~  182 (219)
T KOG0081|consen  113 LSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTNVEKAVELLLDLVMK  182 (219)
T ss_pred             HHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCHHHHHHHHHHHHHH
Confidence            999865  457888999999999997 445444 458999999999999999999999988888776654

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.95  E-value=8.8e-29  Score=173.96  Aligned_cols=141  Identities=26%  Similarity=0.423  Sum_probs=126.2

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC-
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~-   81 (186)
                      |.-.|.+|+...|..+.+++.+....+.||||+||++|..+...||++++++++|||+++++||+.++.|..+++.... 
T Consensus        38 Fn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGn  117 (218)
T KOG0088|consen   38 FNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGN  117 (218)
T ss_pred             cchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCC
Confidence            4557889999999999999999999999999999999999999999999999999999999999999999999998864 


Q ss_pred             CCCEEEEEeCCCCCC-cccC-hHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCCcc
Q 029854           82 NIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLH  143 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~  143 (186)
                      .+-++|||||+||.+ +++. +++...+..-+..|+++||+.+.||.++|..|...+.+..+..
T Consensus       118 ei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt~~MiE~~s~~  181 (218)
T KOG0088|consen  118 EIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESLTAKMIEHSSQR  181 (218)
T ss_pred             eeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHHHHHHHHHhhhc
Confidence            567889999999984 5444 3466788888999999999999999999999999998776443

>cd04122 Rab14 Rab14 subfamily

Probab=99.95  E-value=4.7e-27  Score=171.62  Aligned_cols=136  Identities=34%  Similarity=0.511  Sum_probs=121.3

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...|.||+|.++..+.+.+++..+.+++|||+|+++|..++..++++++++|+|||++++.||+.+..|+..+.... +
T Consensus        27 ~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~  106 (166)
T cd04122          27 FMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP  106 (166)
T ss_pred             CCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC
Confidence            456788999999998888899999999999999999999999999999999999999999999999999999887764 5


Q ss_pred             CCCEEEEEeCCCCCCc-ccC-hHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           82 NIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      +.|+++|+||+|+.+. .+. .+..++++.++++++++||++|.|++++|..+++.+.+
T Consensus       107 ~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~~~~~  165 (166)
T cd04122         107 NTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIYQ  165 (166)
T ss_pred             CCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            7899999999999753 333 34567888889999999999999999999999988754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.95  E-value=6.5e-27  Score=176.20  Aligned_cols=138  Identities=34%  Similarity=0.524  Sum_probs=121.2

Q ss_pred             CCccccccceEEEEEEEEEEC-CeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-
Q 029854            3 VSVWGKATIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~-~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-   80 (186)
                      ++..|.||+|.++....+.++ +..+.++||||+|+++|..++..++++|+++|+|||++++.||+.+..|+..+.... 
T Consensus        25 ~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~  104 (201)
T cd04107          25 FSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVT  104 (201)
T ss_pred             CCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc
Confidence            456789999999998888887 889999999999999999999999999999999999999999999999998887542 


Q ss_pred             ----CCCCEEEEEeCCCCCC-cccCh-HHHHHHHHcC-CcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029854           81 ----ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus        81 ----~~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                          .+.|++||+||+|+.+ +.+.. +..++++.++ ..++++||++|.||+++|.++++.+....
T Consensus       105 ~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~~  171 (201)
T cd04107         105 LPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNILAND  171 (201)
T ss_pred             ccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence                4789999999999973 33333 4567888888 68999999999999999999999987653

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.95  E-value=7.8e-27  Score=171.79  Aligned_cols=137  Identities=29%  Similarity=0.428  Sum_probs=119.5

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      +...|.||+|..+. +.+.+++..+.++||||+|+++|..++..++++++++|+|||++++.||+.+..|...+.+..  
T Consensus        27 f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~  105 (172)
T cd04141          27 FPDYHDPTIEDAYK-QQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLT  105 (172)
T ss_pred             CCCCcCCcccceEE-EEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCC
Confidence            45678999996664 567889999999999999999999999999999999999999999999999999988887653  


Q ss_pred             CCCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029854           81 ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                      .+.|+++|+||+|+.+ +.+.. +...+++.++++|++|||++|.||+++|.++++.+....
T Consensus       106 ~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~  167 (172)
T cd04141         106 EDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLVREIRRKE  167 (172)
T ss_pred             CCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence            5799999999999964 44544 356788888999999999999999999999999887643

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.95  E-value=8.1e-27  Score=177.96  Aligned_cols=138  Identities=21%  Similarity=0.332  Sum_probs=119.4

Q ss_pred             CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhH-HHHHHHHHhhc
Q 029854            2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVC   80 (186)
Q Consensus         2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i-~~~~~~~~~~~   80 (186)
                      .++..|.||++.+|. ..+.+++..+.|.||||+|++.|..++..+++++|++|+|||++++.||+.+ ..|...+...+
T Consensus        25 ~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~  103 (222)
T cd04173          25 AYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC  103 (222)
T ss_pred             CCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC
Confidence            356789999998775 6788899999999999999999999999999999999999999999999998 57888887777


Q ss_pred             CCCCEEEEEeCCCCCCc-------------ccCh-HHHHHHHHcCC-cEEEeccCCCCC-chHHHHHHHHHHhCCC
Q 029854           81 ENIPIVLCGNKVDVKNR-------------QVKA-KQVTFHRKKNL-QYYEISAKSNYN-FEKPFLYLARKLAGDP  140 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~~-------------~~~~-~~~~~~~~~~~-~~~~~Sa~~~~g-i~~l~~~l~~~i~~~~  140 (186)
                      ++.|++|||||+|+.+.             .+.. +...++++.+. +|+||||+++.| |+++|..++.......
T Consensus       104 ~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~~~  179 (222)
T cd04173         104 PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASLGRG  179 (222)
T ss_pred             CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHHhcc
Confidence            89999999999999642             1333 35688888885 899999999985 9999999999876543

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.95  E-value=1e-26  Score=171.46  Aligned_cols=132  Identities=23%  Similarity=0.387  Sum_probs=113.8

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhcC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCE   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~~   81 (186)
                      +..+|.||++. .+...+.+++..+.++||||+|++.|..++..+++++|++|+|||++++.||+.+. .|+..+....+
T Consensus        26 f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~  104 (174)
T cd01871          26 FPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP  104 (174)
T ss_pred             CCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC
Confidence            56789999974 44567778999999999999999999999999999999999999999999999985 69988877777


Q ss_pred             CCCEEEEEeCCCCCCc-------------ccCh-HHHHHHHHcC-CcEEEeccCCCCCchHHHHHHHHH
Q 029854           82 NIPIVLCGNKVDVKNR-------------QVKA-KQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARK  135 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~-------------~~~~-~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~  135 (186)
                      +.|++|||||+|+.+.             .+.. +..+++++++ +++++|||++|.|++++|+.+++.
T Consensus       105 ~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~  173 (174)
T cd01871         105 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRA  173 (174)
T ss_pred             CCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence            8999999999999642             1222 3457888888 489999999999999999999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.95  E-value=1.2e-26  Score=170.55  Aligned_cols=137  Identities=27%  Similarity=0.376  Sum_probs=119.6

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      +...|.||+|.++..+.+.+++..+.++||||+|+++|..++..++++||++++|||++++.+|+.+..|+..+++..  
T Consensus        25 f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~  104 (170)
T cd04108          25 FDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDP  104 (170)
T ss_pred             CCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC
Confidence            567899999999998899999999999999999999999999999999999999999999999999999999987653  


Q ss_pred             CCCCEEEEEeCCCCCCc-cc---ChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           81 ENIPIVLCGNKVDVKNR-QV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~~-~~---~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      .+.|+++|+||+|+.+. ..   ..+...++..++.+++++||++|.|++++|..+++.+.+.
T Consensus       105 ~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~~  167 (170)
T cd04108         105 SSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALTFEL  167 (170)
T ss_pred             CCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            35789999999999643 21   2234567777888999999999999999999999888654

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.95  E-value=1.6e-26  Score=167.80  Aligned_cols=136  Identities=31%  Similarity=0.567  Sum_probs=126.0

Q ss_pred             CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC
Q 029854            2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE   81 (186)
Q Consensus         2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~   81 (186)
                      .++..|.||+|.++..+.+.+++..+.++|||++|+++|..++..++++++++|+|||++++.||+.+..|+..+....+
T Consensus        23 ~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~  102 (162)
T PF00071_consen   23 EFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKP  102 (162)
T ss_dssp             STTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            35778999999999999999999999999999999999999999999999999999999999999999999999999886


Q ss_pred             -CCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854           82 -NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus        82 -~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                       +.|++|+|||+|+.+ +.+..+ ..++++.++.+|+++||+++.||.++|..+++.+.
T Consensus       103 ~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i~  161 (162)
T PF00071_consen  103 EDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKIL  161 (162)
T ss_dssp             TTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred             ccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence             699999999999985 555544 56899999999999999999999999999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04117 Rab15 Rab15 subfamily

Probab=99.95  E-value=2.3e-26  Score=167.37  Aligned_cols=133  Identities=27%  Similarity=0.486  Sum_probs=118.7

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...|.||+|.++..+.+.+++..+.+++|||+|+++|..++..+++++|++++|||++++.||+.+..|++.+.... .
T Consensus        25 ~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~  104 (161)
T cd04117          25 FHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPE  104 (161)
T ss_pred             CCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCC
Confidence            456789999999998899999999999999999999999999999999999999999999999999999999988765 4


Q ss_pred             CCCEEEEEeCCCCCC-cccC-hHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHH
Q 029854           82 NIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  135 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  135 (186)
                      +.|+++|+||+|+.+ +.+. .+...+++.++++|+++||++|.|++++|.+|++.
T Consensus       105 ~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117         105 GVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             CCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            789999999999974 3343 34557788888999999999999999999999864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01865 Rab3 Rab3 subfamily

Probab=99.95  E-value=3.1e-26  Score=167.18  Aligned_cols=136  Identities=25%  Similarity=0.496  Sum_probs=120.1

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...|.||+|.++...++..++..+.+++|||+|+++|..++..++++++++++|||++++.+|+.+..|++.+.... .
T Consensus        26 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~  105 (165)
T cd01865          26 FTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD  105 (165)
T ss_pred             CCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCC
Confidence            456789999999988888888899999999999999999999999999999999999999999999999999998765 4


Q ss_pred             CCCEEEEEeCCCCCCc-ccC-hHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           82 NIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      +.|+++|+||+|+.+. ... ....+++..++++++++||++|.|+.++|++++..+..
T Consensus       106 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~  164 (165)
T cd01865         106 NAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDIICD  164 (165)
T ss_pred             CCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            7899999999999753 333 33456777888999999999999999999999987653

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04134 Rho3 Rho3 subfamily

Probab=99.94  E-value=8e-26  Score=168.77  Aligned_cols=137  Identities=26%  Similarity=0.394  Sum_probs=116.7

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhcC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCE   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~~   81 (186)
                      +...|.||++.++. ..+.+++..+.++||||+|++.|..++..++++++++|+|||++++.||+.+. .|+..+....+
T Consensus        25 ~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~  103 (189)
T cd04134          25 FPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCP  103 (189)
T ss_pred             CCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC
Confidence            45678999998875 45667888899999999999999999999999999999999999999999986 69999988777


Q ss_pred             CCCEEEEEeCCCCCCcc-------------cCh-HHHHHHHHcC-CcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029854           82 NIPIVLCGNKVDVKNRQ-------------VKA-KQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~~-------------~~~-~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                      +.|+++|+||+|+.+..             +.. +...++...+ ++|++|||++|.||+++|.++++.+....
T Consensus       104 ~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~~~  177 (189)
T cd04134         104 GVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVALNVR  177 (189)
T ss_pred             CCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHhccc
Confidence            89999999999997532             122 2446676666 68999999999999999999999987543

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04110 Rab35 Rab35 subfamily

Probab=99.94  E-value=8e-26  Score=170.09  Aligned_cols=138  Identities=30%  Similarity=0.471  Sum_probs=123.5

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN   82 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~   82 (186)
                      +...|.||+|.++....+.+++..+.+.||||||++.|..++..++++++++|+|||++++.||+.+..|++.+......
T Consensus        31 ~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~  110 (199)
T cd04110          31 FSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDD  110 (199)
T ss_pred             CCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCC
Confidence            45678999999999889988999999999999999999999999999999999999999999999999999999887788


Q ss_pred             CCEEEEEeCCCCCCc-ccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029854           83 IPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus        83 ~p~ilv~nK~Dl~~~-~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                      .|++||+||+|+.+. .+..+ ...++...+.+++++||++|.||+++|+++.+.+....
T Consensus       111 ~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~~~~~~  170 (199)
T cd04110         111 VCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAK  170 (199)
T ss_pred             CCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHHHHHHhh
Confidence            999999999999753 33333 45677788899999999999999999999999997654

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04127 Rab27A Rab27a subfamily

Probab=99.94  E-value=4.2e-26  Score=168.45  Aligned_cols=136  Identities=31%  Similarity=0.502  Sum_probs=119.3

Q ss_pred             CCccccccceEEEEEEEEEEC----------CeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHH
Q 029854            3 VSVWGKATIGVEVHPLDFFTN----------CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTW   72 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~----------~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~   72 (186)
                      +...|.||+|.++....+.++          +..+.++||||+|+++|..++..++++++++|+|||++++.||..+..|
T Consensus        29 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~  108 (180)
T cd04127          29 FNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNW  108 (180)
T ss_pred             CCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHH
Confidence            466889999999988777664          4679999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhc--CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           73 HRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        73 ~~~~~~~~--~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      +..+....  .+.|+++|+||+|+.+ +.+..+ ..+++..++++++++||++|.|++++|+.+++.+.+
T Consensus       109 ~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~~~~~  178 (180)
T cd04127         109 MSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATGTNVEKAVERLLDLVMK  178 (180)
T ss_pred             HHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            99987753  5789999999999975 344433 557888899999999999999999999999987753

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.94  E-value=6.2e-26  Score=165.89  Aligned_cols=137  Identities=28%  Similarity=0.513  Sum_probs=121.8

Q ss_pred             CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-
Q 029854            2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-   80 (186)
Q Consensus         2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-   80 (186)
                      .++..|.||+|.++....+.+++..+.+++|||+|++++..++..++++||++|+|||++++.+|..+..|+..+.+.. 
T Consensus        27 ~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~  106 (167)
T cd01867          27 SFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHAS  106 (167)
T ss_pred             cCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC
Confidence            3567899999999988888889999999999999999999999999999999999999999999999999999998765 


Q ss_pred             CCCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           81 ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      .+.|+++|+||+|+.+ +.+.. ....++..++++++++||++|.|++++|.++++.+..
T Consensus       107 ~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~  166 (167)
T cd01867         107 EDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAKDIKK  166 (167)
T ss_pred             CCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            5789999999999985 33333 3457788888999999999999999999999998864

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.94  E-value=7.8e-26  Score=164.98  Aligned_cols=135  Identities=32%  Similarity=0.542  Sum_probs=121.0

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      ++..|.||+|.++....+.+++..+.+++|||+|+++|..++..++++++++|+|||++++.||..+..|+..+.+.. .
T Consensus        27 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~  106 (166)
T cd01869          27 YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASE  106 (166)
T ss_pred             CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCC
Confidence            456789999999999999999999999999999999999999999999999999999999999999999999998876 5


Q ss_pred             CCCEEEEEeCCCCCC-cccC-hHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854           82 NIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                      +.|+++|+||+|+.. +.+. .+...++..++++++++||++|.|++++|..+++.+.
T Consensus       107 ~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~  164 (166)
T cd01869         107 NVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAREIK  164 (166)
T ss_pred             CCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHHHHH
Confidence            789999999999864 3333 3355778888999999999999999999999998875

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04109 Rab28 Rab28 subfamily

Probab=99.94  E-value=8.7e-26  Score=171.83  Aligned_cols=138  Identities=25%  Similarity=0.387  Sum_probs=121.2

Q ss_pred             CCCccccccceEEEEEEEEEECC-eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc
Q 029854            2 NVSVWGKATIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC   80 (186)
Q Consensus         2 ~~~~~~~~Tig~~~~~~~~~~~~-~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~   80 (186)
                      .+...|.||+|.+++.+.+.+++ ..+.++||||+|++.+..++..++++||++|+|||++++.||+.+..|+..+.+..
T Consensus        24 ~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~  103 (215)
T cd04109          24 GFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVL  103 (215)
T ss_pred             CCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            35678999999999988888865 57999999999999999999999999999999999999999999999999998864


Q ss_pred             ----CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           81 ----ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        81 ----~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                          .+.|+++|+||+|+.+ +.+..+ ...+++.++++++++||++|.||+++|+++++.+...
T Consensus       104 ~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~l~~~  168 (215)
T cd04109         104 KSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAAELLGV  168 (215)
T ss_pred             cccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence                2468999999999974 444443 4578888889999999999999999999999998764

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04124 RabL2 RabL2 subfamily

Probab=99.94  E-value=1.8e-25  Score=162.62  Aligned_cols=135  Identities=30%  Similarity=0.463  Sum_probs=119.0

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN   82 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~   82 (186)
                      +...+.||++.++......+++..+.+++|||+|+++|..++..+++++|++|+|||++++.+|+.+..|+..+.+..++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~  104 (161)
T cd04124          25 YEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPE  104 (161)
T ss_pred             CCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC
Confidence            34567789999998888888999999999999999999999999999999999999999999999999999999887778


Q ss_pred             CCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           83 IPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        83 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      .|+++|+||+|+... ...+...++..++++++++||++|.|++++|+.+++.+.+
T Consensus       105 ~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~  159 (161)
T cd04124         105 IPCIVVANKIDLDPS-VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVS  159 (161)
T ss_pred             CcEEEEEECccCchh-HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            999999999998533 2233446667778899999999999999999999988765

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04136 Rap_like Rap-like subfamily

Probab=99.94  E-value=1.1e-25  Score=163.28  Aligned_cols=133  Identities=29%  Similarity=0.449  Sum_probs=115.1

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      +...|.||++ +.+.+.+.+++..+.++||||+|+++|..++..++++++++++|||++++.+|+.+..|+..+....  
T Consensus        26 ~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~  104 (163)
T cd04136          26 FVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDT  104 (163)
T ss_pred             CCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence            4567889998 5556778889999999999999999999999999999999999999999999999999999987753  


Q ss_pred             CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029854           81 ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      .+.|+++|+||+|+.+ +.+..+ ...+++.++.+++++||++|.|+.++|.++++.+
T Consensus       105 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~  162 (163)
T cd04136         105 ENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVRQI  162 (163)
T ss_pred             CCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence            5799999999999964 333333 4467777788999999999999999999998765

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.94  E-value=1.4e-25  Score=163.24  Aligned_cols=135  Identities=23%  Similarity=0.438  Sum_probs=119.8

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      +...|.||+|.++..+.+.+++..+.+++|||+|++.|..++..++++++++|+|||++++.+|+.+..|+..+.+..  
T Consensus        25 ~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~  104 (168)
T cd04119          25 FVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGP  104 (168)
T ss_pred             CCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccc
Confidence            455799999999999999999999999999999999999999999999999999999999999999999999998765  


Q ss_pred             ----CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854           81 ----ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus        81 ----~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                          .+.|+++|+||+|+.+ +....+ ...++...+++++++||++|.|++++|++|++.+.
T Consensus       105 ~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~  167 (168)
T cd04119         105 HGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSIV  167 (168)
T ss_pred             cccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence                3589999999999973 333333 44677888899999999999999999999998875

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.94  E-value=8.4e-26  Score=166.69  Aligned_cols=139  Identities=23%  Similarity=0.392  Sum_probs=122.8

Q ss_pred             CCCccccccceEEEEEEEEEEC-CeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhh
Q 029854            2 NVSVWGKATIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRV   79 (186)
Q Consensus         2 ~~~~~~~~Tig~~~~~~~~~~~-~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~   79 (186)
                      -++..|.||+. |-+...+.++ |+.+.+.||||+||+.|.+++...|.++|++++||++.++.||+++. .|+.++.+.
T Consensus        28 ~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~  106 (198)
T KOG0393|consen   28 AFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHH  106 (198)
T ss_pred             cCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhh
Confidence            37889999997 6666788895 99999999999999999999999999999999999999999999984 899999999


Q ss_pred             cCCCCEEEEEeCCCCCCc-------------ccC-hHHHHHHHHcC-CcEEEeccCCCCCchHHHHHHHHHHhCCCC
Q 029854           80 CENIPIVLCGNKVDVKNR-------------QVK-AKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKLAGDPN  141 (186)
Q Consensus        80 ~~~~p~ilv~nK~Dl~~~-------------~~~-~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  141 (186)
                      +++.|+|+||+|.||++.             .+. .+...++++.| ..|++|||+++.|++++|+..++..+..+.
T Consensus       107 cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  107 CPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             CCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHHHHHHhcccc
Confidence            999999999999999842             122 23557888888 579999999999999999999999987654

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.6e-26  Score=159.96  Aligned_cols=132  Identities=35%  Similarity=0.563  Sum_probs=121.8

Q ss_pred             cccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCEE
Q 029854            8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIV   86 (186)
Q Consensus         8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~~~p~i   86 (186)
                      .-|||++|..+.+.+.|.+++++||||+||++|+...++|+++|.+.++|||++.+.++..+..|+...+... ++.-++
T Consensus        41 phtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~  120 (215)
T KOG0097|consen   41 PHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIF  120 (215)
T ss_pred             CcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEE
Confidence            4599999999999999999999999999999999999999999999999999999999999999999998874 788999


Q ss_pred             EEEeCCCCCC-cccC-hHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           87 LCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        87 lv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      ++|||.||.. +.+. ++..+++.++++.++++||++|.|+++.|-+.++++.+.
T Consensus       121 lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle~akkiyqn  175 (215)
T KOG0097|consen  121 LIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETAKKIYQN  175 (215)
T ss_pred             EecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHHHHHHHh
Confidence            9999999984 4444 456799999999999999999999999999999999765

>cd04144 Ras2 Ras2 subfamily

Probab=99.94  E-value=2.1e-25  Score=166.65  Aligned_cols=138  Identities=28%  Similarity=0.432  Sum_probs=118.5

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      +...|.||+|..+. +.+.+++..+.++||||+|+++|..++..++++||++|+|||+++..||+.+..|+..+....  
T Consensus        24 f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~  102 (190)
T cd04144          24 FVETYDPTIEDSYR-KQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDE  102 (190)
T ss_pred             CCccCCCchHhhEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcc
Confidence            45678999996664 566788999999999999999999999999999999999999999999999999998887653  


Q ss_pred             --CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCC
Q 029854           81 --ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN  141 (186)
Q Consensus        81 --~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  141 (186)
                        .+.|+++|+||+|+.+ +.+... ...++..++++++++||++|.|++++|.++++.+.....
T Consensus       103 ~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~~~~  167 (190)
T cd04144         103 SAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQRQ  167 (190)
T ss_pred             cCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence              4689999999999964 444433 457778888999999999999999999999998876543

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.94  E-value=3.5e-25  Score=162.58  Aligned_cols=135  Identities=24%  Similarity=0.373  Sum_probs=116.4

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhcC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCE   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~~   81 (186)
                      +...|.||++..+. ..+.+++..+.+++|||+|++.|..++..+++++|++|+|||++++.||+.+. .|+..+.+..+
T Consensus        23 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~  101 (174)
T smart00174       23 FPEDYVPTVFENYS-ADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP  101 (174)
T ss_pred             CCCCCCCcEEeeee-EEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC
Confidence            56778999986665 56778899999999999999999999999999999999999999999999985 69999988778


Q ss_pred             CCCEEEEEeCCCCCCcc-------------cCh-HHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           82 NIPIVLCGNKVDVKNRQ-------------VKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~~-------------~~~-~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      +.|+++|+||+|+....             +.. +..++++..+. ++++|||++|.||+++|..+++.+.+
T Consensus       102 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~~~  173 (174)
T smart00174      102 NTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRAALN  173 (174)
T ss_pred             CCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHhcC
Confidence            99999999999996421             222 24568888886 89999999999999999999988754

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04116 Rab9 Rab9 subfamily

Probab=99.94  E-value=2.8e-25  Score=162.65  Aligned_cols=134  Identities=31%  Similarity=0.548  Sum_probs=118.3

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      ++..+.||+|.++..+.+.+++..+.++||||+|+++|..++..+++++|++|+|||++++.||+.+..|...+....  
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  109 (170)
T cd04116          30 FDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADV  109 (170)
T ss_pred             CCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhccc
Confidence            456788999999998899999999999999999999999999999999999999999999999999999999887653  


Q ss_pred             ---CCCCEEEEEeCCCCCCcccChH-HHHHHHHcC-CcEEEeccCCCCCchHHHHHHHHHH
Q 029854           81 ---ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        81 ---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                         .+.|+++|+||+|+..+.+..+ ..++++.++ .+++++||++|.|+.++|..+++.+
T Consensus       110 ~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~~  170 (170)
T cd04116         110 KEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEEAVRRV  170 (170)
T ss_pred             ccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHhhC
Confidence               3689999999999976555444 557888787 4799999999999999999998753

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.94  E-value=2.1e-25  Score=161.76  Aligned_cols=133  Identities=29%  Similarity=0.574  Sum_probs=118.3

Q ss_pred             CCccccccceEEEEEEEEEEC--CeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc
Q 029854            3 VSVWGKATIGVEVHPLDFFTN--CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~--~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~   80 (186)
                      +...|.||+|.++....+.+.  +..+.++||||||+++|..++..++++++++++|||++++.+|+.+..|+..+.+..
T Consensus        25 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~  104 (162)
T cd04106          25 FTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC  104 (162)
T ss_pred             CCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC
Confidence            456789999999988888877  788999999999999999999999999999999999999999999999999998877


Q ss_pred             CCCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHH
Q 029854           81 ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  135 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  135 (186)
                      .+.|+++|+||+|+.. ..+.. +...+++..+++++++||++|.|++++|.+|...
T Consensus       105 ~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  161 (162)
T cd04106         105 GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK  161 (162)
T ss_pred             CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            8899999999999964 33343 3557888889999999999999999999999754

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=2.8e-26  Score=159.96  Aligned_cols=134  Identities=32%  Similarity=0.565  Sum_probs=118.4

Q ss_pred             ccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCC
Q 029854            5 VWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENI   83 (186)
Q Consensus         5 ~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~~~   83 (186)
                      --...|||++|..+++.++|.+++++||||+||++|+++..+||+.|+++|+|||++=.+||+-+..|+.++.++. ..+
T Consensus        34 pgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kv  113 (213)
T KOG0095|consen   34 PGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKV  113 (213)
T ss_pred             CCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcce
Confidence            3456899999999999999999999999999999999999999999999999999999999999999999999986 456


Q ss_pred             CEEEEEeCCCCCCc-ccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           84 PIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        84 p~ilv~nK~Dl~~~-~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      -.|+||||+|+.++ .+++. ..++......-++++||+...|++.+|..++-.+..
T Consensus       114 lkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a~rli~  170 (213)
T KOG0095|consen  114 LKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLACRLIS  170 (213)
T ss_pred             EEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHHHH
Confidence            67899999999875 45444 346776666778999999999999999999877754

>PTZ00369 Ras-like protein; Provisional

Probab=99.93  E-value=2.9e-25  Score=165.67  Aligned_cols=136  Identities=25%  Similarity=0.408  Sum_probs=118.5

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      +...|.||+|..+ .+.+.+++..+.++||||+|+++|..++..++++++++|+|||++++.+|+.+..|+..+.+..  
T Consensus        30 ~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~  108 (189)
T PTZ00369         30 FIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDK  108 (189)
T ss_pred             CCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence            3457889999777 5678889999999999999999999999999999999999999999999999999999987764  


Q ss_pred             CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           81 ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      .+.|+++|+||+|+.+ +.+... ...++..++.+++++||++|.||+++|.++++.+...
T Consensus       109 ~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~~~l~~~  169 (189)
T PTZ00369        109 DRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRKY  169 (189)
T ss_pred             CCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence            4789999999999964 334433 4567777788999999999999999999999988654

>cd04112 Rab26 Rab26 subfamily

Probab=99.93  E-value=3.2e-25  Score=165.77  Aligned_cols=137  Identities=27%  Similarity=0.493  Sum_probs=121.8

Q ss_pred             ccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCC
Q 029854            5 VWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENI   83 (186)
Q Consensus         5 ~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~~~   83 (186)
                      ..|.||++.++..+.+.+++..+.++||||||+++|..++..+++++|++|+|||++++.+|+++..|+..+.... .+.
T Consensus        28 ~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~  107 (191)
T cd04112          28 GNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDV  107 (191)
T ss_pred             cCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC
Confidence            3689999999998888899999999999999999999999999999999999999999999999999999998876 478


Q ss_pred             CEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCC
Q 029854           84 PIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN  141 (186)
Q Consensus        84 p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  141 (186)
                      |+++|+||+|+.. +.+.. +...++..++++|+++||++|.|++++|.++++.+.....
T Consensus       108 piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~~  167 (191)
T cd04112         108 VIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRKY  167 (191)
T ss_pred             cEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence            9999999999963 44433 3457777888999999999999999999999999987643

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04175 Rap1 Rap1 subgroup

Probab=99.93  E-value=3.7e-25  Score=161.08  Aligned_cols=134  Identities=26%  Similarity=0.401  Sum_probs=116.0

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      +...|.||++..+. +.+.+++..+.++||||+|+++|..++..+++++|++|+|||+++..+|+.+..|+..+....  
T Consensus        26 ~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~  104 (164)
T cd04175          26 FVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDT  104 (164)
T ss_pred             CCcccCCcchheEE-EEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence            34568899997664 678889999999999999999999999999999999999999999999999999999987653  


Q ss_pred             CCCCEEEEEeCCCCCCc-ccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854           81 ENIPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~~-~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                      .+.|+++|+||+|+.+. .+..+ ...+++.++++++++||++|.|++++|.++++.+.
T Consensus       105 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~  163 (164)
T cd04175         105 EDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQIN  163 (164)
T ss_pred             CCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHhh
Confidence            67999999999999753 33333 34677788899999999999999999999998763

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>PLN03110 Rab GTPase; Provisional

Probab=99.93  E-value=3.8e-25  Score=168.49  Aligned_cols=137  Identities=31%  Similarity=0.511  Sum_probs=122.2

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...|.||+|.++..+.+.+++..+.++||||+|+++|..++..++++++++|+|||++++.+|+.+..|+..+.... .
T Consensus        37 ~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~  116 (216)
T PLN03110         37 FCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADS  116 (216)
T ss_pred             CCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCC
Confidence            456789999999999999999999999999999999999999999999999999999999999999999999988765 4


Q ss_pred             CCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           82 NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      +.|+++|+||+|+.+ +.+..+ ...++..++++++++||++|.|++++|+.++..+.+.
T Consensus       117 ~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~  176 (216)
T PLN03110        117 NIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHI  176 (216)
T ss_pred             CCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            799999999999864 444443 4567777889999999999999999999999988763

>cd04125 RabA_like RabA-like subfamily

Probab=99.93  E-value=7.8e-25  Score=163.12  Aligned_cols=137  Identities=30%  Similarity=0.541  Sum_probs=121.3

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...|.||+|.++..+.+.+++..+.+++|||+|+++|..++..+++++|++|+|||++++.+|..+..|+..+.... .
T Consensus        25 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~  104 (188)
T cd04125          25 FSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARE  104 (188)
T ss_pred             CCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC
Confidence            445689999999998889999999999999999999999999999999999999999999999999999999998765 4


Q ss_pred             CCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           82 NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      +.|+++|+||+|+.+ +.+... ...++...+++++++||++|.|++++|.++++.+...
T Consensus       105 ~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~~~~~  164 (188)
T cd04125         105 NVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKLIIKR  164 (188)
T ss_pred             CCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            689999999999974 444433 4567777888999999999999999999999998754

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04126 Rab20 Rab20 subfamily

Probab=99.93  E-value=4.2e-25  Score=168.36  Aligned_cols=131  Identities=27%  Similarity=0.408  Sum_probs=111.7

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCC
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIP   84 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~~~p   84 (186)
                      .+.||+|.++..+.+    ..+.+.||||+|++.|..++..++++|+++|+|||++++.||+.+..|+..+.+.. .+.|
T Consensus        27 ~~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~p  102 (220)
T cd04126          27 DTVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCL  102 (220)
T ss_pred             CCCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc
Confidence            478999999876654    57899999999999999999999999999999999999999999998888776653 5789


Q ss_pred             EEEEEeCCCCCC--------------------cccCh-HHHHHHHHcC--------------CcEEEeccCCCCCchHHH
Q 029854           85 IVLCGNKVDVKN--------------------RQVKA-KQVTFHRKKN--------------LQYYEISAKSNYNFEKPF  129 (186)
Q Consensus        85 ~ilv~nK~Dl~~--------------------~~~~~-~~~~~~~~~~--------------~~~~~~Sa~~~~gi~~l~  129 (186)
                      ++|||||+|+.+                    +.+.. +...++++.+              ++|++|||++|.||+++|
T Consensus       103 iIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf  182 (220)
T cd04126         103 FAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELF  182 (220)
T ss_pred             EEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHH
Confidence            999999999964                    33333 3557887765              689999999999999999


Q ss_pred             HHHHHHHhCCC
Q 029854          130 LYLARKLAGDP  140 (186)
Q Consensus       130 ~~l~~~i~~~~  140 (186)
                      ..+++.+....
T Consensus       183 ~~i~~~~~~~~  193 (220)
T cd04126         183 EYLFNLVLPLI  193 (220)
T ss_pred             HHHHHHHHHHH
Confidence            99999887543

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd01868 Rab11_like Rab11-like

Probab=99.93  E-value=5.4e-25  Score=160.28  Aligned_cols=134  Identities=33%  Similarity=0.562  Sum_probs=119.2

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC-
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~-   81 (186)
                      +...+.||+|.++..+.+.+++..+.+++|||||+++|..++..++++++++|+|||++++.+|..+..|+..+.+... 
T Consensus        28 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  107 (165)
T cd01868          28 FNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADS  107 (165)
T ss_pred             CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC
Confidence            4567899999999999999999999999999999999999999999999999999999999999999999999988764 


Q ss_pred             CCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029854           82 NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      +.|+++|+||+|+.+ +.+.. +...++...+++++++||++|.|++++|++++..+
T Consensus       108 ~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i  164 (165)
T cd01868         108 NIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI  164 (165)
T ss_pred             CCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            599999999999975 33333 34577777788999999999999999999999775

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04176 Rap2 Rap2 subgroup

Probab=99.93  E-value=6.8e-25  Score=159.44  Aligned_cols=133  Identities=26%  Similarity=0.412  Sum_probs=114.7

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      +...|.||++ +++...+.+++..+.++||||+|+++|..++..++++||++|+|||++++.||+++..|+..+.+..  
T Consensus        26 ~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  104 (163)
T cd04176          26 FIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGY  104 (163)
T ss_pred             CCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence            3456789987 6666788889999999999999999999999999999999999999999999999999999888764  


Q ss_pred             CCCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029854           81 ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      .+.|+++|+||+|+.+ ..+.. +...++...+.+++++||++|.|+.++|.++++.+
T Consensus       105 ~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd04176         105 EKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM  162 (163)
T ss_pred             CCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence            5799999999999964 33333 34566777788999999999999999999998765

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.93  E-value=5.8e-25  Score=163.48  Aligned_cols=137  Identities=25%  Similarity=0.328  Sum_probs=117.0

Q ss_pred             CCccccccceEEEEEEEEEEC-CeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhc
Q 029854            3 VSVWGKATIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVC   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~-~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~   80 (186)
                      +...|.||++.++... +... +..+.++||||+|+++|..++..++++||++|+|||++++.||+.+. .|+..+.+..
T Consensus        25 ~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~  103 (187)
T cd04132          25 FPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFC  103 (187)
T ss_pred             CCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC
Confidence            4567899999888654 5554 78899999999999999999999999999999999999999999985 6998887766


Q ss_pred             CCCCEEEEEeCCCCCCc-----ccCh-HHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029854           81 ENIPIVLCGNKVDVKNR-----QVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~~-----~~~~-~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                      ++.|+++|+||+|+...     .+.. +..+++..++. +++++||++|.||.++|..+++.+....
T Consensus       104 ~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~  170 (187)
T cd04132         104 PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEALKKE  170 (187)
T ss_pred             CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHHhhh
Confidence            78999999999999642     2223 34578888887 8999999999999999999999998654

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04111 Rab39 Rab39 subfamily

Probab=99.93  E-value=7.1e-25  Score=166.42  Aligned_cols=138  Identities=25%  Similarity=0.458  Sum_probs=120.8

Q ss_pred             CCccccccceEEEEEEEEEE-CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-
Q 029854            3 VSVWGKATIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-   80 (186)
                      +...+.||+|.++..+.+.+ ++..+.+++|||+|+++|..++..++++++++|+|||++++.||+.+..|+..+.... 
T Consensus        27 ~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~  106 (211)
T cd04111          27 FAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQ  106 (211)
T ss_pred             CCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence            45668899999999888887 5778999999999999999999999999999999999999999999999999988764 


Q ss_pred             -CCCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029854           81 -ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus        81 -~~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                       ...|++||+||+|+.+ +.+.. +...+++.++++++++||++|.|++++|++|++.+.+..
T Consensus       107 ~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~~~~~  169 (211)
T cd04111         107 PHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERI  169 (211)
T ss_pred             CCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence             3578899999999975 33433 355788888899999999999999999999999887654

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.93  E-value=7.7e-25  Score=159.23  Aligned_cols=134  Identities=23%  Similarity=0.475  Sum_probs=117.1

Q ss_pred             CCccccccceEEEEEEEEEEC-CeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC
Q 029854            3 VSVWGKATIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~-~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~   81 (186)
                      +...|.||+|.++..+.+.++ +..+.+.+|||+|++.+..++..+++++|++++|||++++.+|..+..|++.+.....
T Consensus        27 ~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~  106 (164)
T cd04101          27 FPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASK  106 (164)
T ss_pred             cCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC
Confidence            567899999999988888775 6779999999999999999999999999999999999999999999999999888766


Q ss_pred             CCCEEEEEeCCCCCCc-ccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029854           82 NIPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~-~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      +.|+++|+||+|+.+. .+... ...+...++++++++||++|.|++++|..+++.+
T Consensus       107 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  163 (164)
T cd04101         107 HMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLARAF  163 (164)
T ss_pred             CCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence            7999999999999653 33333 3456667788999999999999999999999875

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04118 Rab24 Rab24 subfamily

Probab=99.93  E-value=1.9e-24  Score=161.57  Aligned_cols=135  Identities=25%  Similarity=0.423  Sum_probs=119.5

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCE
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI   85 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~   85 (186)
                      .|.||+|.++..+.+.+++..+.+.+|||+|++++..++..+++++|++|+|||++++.+|+.+..|+..+....++.|+
T Consensus        29 ~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~pi  108 (193)
T cd04118          29 PYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKI  108 (193)
T ss_pred             CcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCE
Confidence            68999999998889999999999999999999999999999999999999999999999999999999999877668999


Q ss_pred             EEEEeCCCCCCc-----ccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029854           86 VLCGNKVDVKNR-----QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus        86 ilv~nK~Dl~~~-----~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                      ++|+||+|+.+.     .+.. +..+++..++.+++++||++|.|++++|+++++.+.+..
T Consensus       109 ilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~  169 (193)
T cd04118         109 YLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFVSRA  169 (193)
T ss_pred             EEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            999999998632     2222 344677777889999999999999999999999997654

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.93  E-value=2.7e-24  Score=158.09  Aligned_cols=131  Identities=21%  Similarity=0.341  Sum_probs=112.2

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhcC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCE   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~~   81 (186)
                      +..+|.||+ .+++...+.+++..+.+++|||+|+++|..++..+++++|++|+|||++++.||+.+. .|+..+....+
T Consensus        25 ~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~  103 (173)
T cd04130          25 YPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNP  103 (173)
T ss_pred             CCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCC
Confidence            456788997 4666677888999999999999999999999999999999999999999999999984 79988887667


Q ss_pred             CCCEEEEEeCCCCCCc-------------ccCh-HHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHH
Q 029854           82 NIPIVLCGNKVDVKNR-------------QVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLAR  134 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~-------------~~~~-~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~  134 (186)
                      +.|+++|+||+|+...             .+.. +...+++.++. +++++||++|.|++++|+.++.
T Consensus       104 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~~  171 (173)
T cd04130         104 KAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAIL  171 (173)
T ss_pred             CCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence            8999999999998632             2333 35578888887 8999999999999999998874

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd01864 Rab19 Rab19 subfamily

Probab=99.93  E-value=1.3e-24  Score=158.44  Aligned_cols=133  Identities=32%  Similarity=0.549  Sum_probs=116.8

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...+.||+|.++..+.+.+++..+.++||||||++.|..++..+++++|++++|||++++.+|+.+..|+..+.... .
T Consensus        28 ~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~  107 (165)
T cd01864          28 FSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGAS  107 (165)
T ss_pred             CcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCC
Confidence            456788999999998899999988999999999999999999999999999999999999999999999999998754 5


Q ss_pred             CCCEEEEEeCCCCCCc-ccCh-HHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHH
Q 029854           82 NIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARK  135 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~-~~~~-~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~  135 (186)
                      +.|+++|+||+|+.+. .+.. ....+++.++. .++++||++|.|++++|..+++.
T Consensus       108 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~  164 (165)
T cd01864         108 NVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATE  164 (165)
T ss_pred             CCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence            7999999999999743 3333 35577777775 68999999999999999999875

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01866 Rab2 Rab2 subfamily

Probab=99.93  E-value=2.5e-24  Score=157.57  Aligned_cols=136  Identities=31%  Similarity=0.529  Sum_probs=120.3

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...+.||+|.++....+.+++..+.+.+|||+|+++|..++..+++++|++|+|||++++.||+.+..|+..++... +
T Consensus        29 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~  108 (168)
T cd01866          29 FQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNS  108 (168)
T ss_pred             CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC
Confidence            345678999999999999999999999999999999999999999999999999999999999999999999998764 6


Q ss_pred             CCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           82 NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      +.|+++|+||+|+.+ +....+ ...++..++++++++||++|.|++++|..+++.+.+
T Consensus       109 ~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~~~~  167 (168)
T cd01866         109 NMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAKEIYE  167 (168)
T ss_pred             CCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            899999999999974 333333 446778888999999999999999999999988754

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.93  E-value=2.2e-24  Score=155.91  Aligned_cols=133  Identities=26%  Similarity=0.441  Sum_probs=115.5

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      +...|.||++..+ .+.+.+++..+.+++|||+|+++|..++..++++++++++|||+++..+|+.+..|+..+.+..  
T Consensus        26 ~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~  104 (162)
T cd04138          26 FVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDS  104 (162)
T ss_pred             CcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence            4557889998665 5667788989999999999999999999999999999999999999999999999999888764  


Q ss_pred             CCCCEEEEEeCCCCCCcccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029854           81 ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      .+.|+++|+||+|+.++..... ...+++..+++++++||++|.|++++|.++++.+
T Consensus       105 ~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  161 (162)
T cd04138         105 DDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI  161 (162)
T ss_pred             CCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence            5789999999999986554443 4567777889999999999999999999998765

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04140 ARHI_like ARHI subfamily

Probab=99.92  E-value=3e-24  Score=156.70  Aligned_cols=131  Identities=24%  Similarity=0.292  Sum_probs=112.0

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      +...|.||++..+ .+.+..++..+.+++|||+|+++|..++..++++++++|+|||++++.||+.+..|+..+.+..  
T Consensus        26 f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~  104 (165)
T cd04140          26 FRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGN  104 (165)
T ss_pred             CCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcC
Confidence            4567899998665 4566677888999999999999999999999999999999999999999999999988877653  


Q ss_pred             --CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHH
Q 029854           81 --ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  134 (186)
Q Consensus        81 --~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  134 (186)
                        ++.|+++|+||+|+.+ +.+..+ ...++..+++++++|||++|.|++++|++|+.
T Consensus       105 ~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~  162 (165)
T cd04140         105 NIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQELLN  162 (165)
T ss_pred             CCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHh
Confidence              5789999999999975 444443 45677777889999999999999999999874

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04113 Rab4 Rab4 subfamily

Probab=99.92  E-value=3.2e-24  Score=155.59  Aligned_cols=134  Identities=32%  Similarity=0.556  Sum_probs=118.6

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...+.||+|.++..+.+.+++..+.+++|||+|+++|..++..++++++++|+|||++++.+|..+..|+..+.... +
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  104 (161)
T cd04113          25 FKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASP  104 (161)
T ss_pred             CCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC
Confidence            456788999999999999999999999999999999999999999999999999999999999999999999887665 6


Q ss_pred             CCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029854           82 NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      +.|+++|+||+|+.. +.+.. +...+++..+++++++||++|.|++++|.++++.+
T Consensus       105 ~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~~  161 (161)
T cd04113         105 NIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARSI  161 (161)
T ss_pred             CCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhC
Confidence            899999999999974 33333 34577888889999999999999999999998753

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.92  E-value=6.7e-24  Score=155.61  Aligned_cols=134  Identities=31%  Similarity=0.544  Sum_probs=117.8

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccC-CccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-   80 (186)
                      +...+.||+|.++....+.+++..+.+++|||+|+++|. .++..+++++|++++|||++++.+|+.+..|+..+.... 
T Consensus        27 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~  106 (170)
T cd04115          27 FPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSL  106 (170)
T ss_pred             CCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcC
Confidence            456789999999999999999999999999999999886 578899999999999999999999999999999988764 


Q ss_pred             -CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCC---CCCchHHHHHHHHHH
Q 029854           81 -ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKS---NYNFEKPFLYLARKL  136 (186)
Q Consensus        81 -~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~---~~gi~~l~~~l~~~i  136 (186)
                       .+.|+++|+||+|+.+ +++..+ ..+++..++++|+++||++   +.|++++|..+++.+
T Consensus       107 ~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~  168 (170)
T cd04115         107 PNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL  168 (170)
T ss_pred             CCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence             5799999999999975 333433 4577888889999999999   889999999999876

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.92  E-value=6.5e-24  Score=154.14  Aligned_cols=133  Identities=29%  Similarity=0.440  Sum_probs=114.0

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      +...|.||++..+ .....+++..+.+++|||||+++|..++..++++++++++|||+++..+|+.+..|+..+.+..  
T Consensus        27 ~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~  105 (164)
T cd04145          27 FVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDR  105 (164)
T ss_pred             CCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC
Confidence            3467889998555 4566789999999999999999999999999999999999999999999999999999887753  


Q ss_pred             CCCCEEEEEeCCCCCCc-ccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029854           81 ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      .+.|+++++||+|+... .... ...++++.++++++++||++|.|++++|+++++.+
T Consensus       106 ~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  163 (164)
T cd04145         106 DEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLVRVI  163 (164)
T ss_pred             CCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence            57899999999999753 3333 34577777889999999999999999999998765

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.92  E-value=8e-24  Score=153.53  Aligned_cols=136  Identities=34%  Similarity=0.599  Sum_probs=121.4

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      ++..+.||++.++....+.+++..+.+++||+||++.|..++..+++++|++|+|||++++.+++.+..|+..+.... +
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~  104 (164)
T smart00175       25 FSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADP  104 (164)
T ss_pred             CCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC
Confidence            466788999999999999999999999999999999999999999999999999999999999999999999988765 6


Q ss_pred             CCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           82 NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      +.|+++|+||+|+.. .....+ ...+++.++++++++||++|.|++++|+.+++.+.+
T Consensus       105 ~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~~  163 (164)
T smart00175      105 NVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILK  163 (164)
T ss_pred             CCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence            899999999999875 444433 557788888999999999999999999999998754

Rab GTPases are implicated in vesicle trafficking.

>PLN03108 Rab family protein; Provisional

Probab=99.92  E-value=5.7e-24  Score=161.34  Aligned_cols=137  Identities=31%  Similarity=0.515  Sum_probs=121.8

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...|.||+|.++....+.+++..+.+++|||+|++.|..++..+++++|++|+|||++++.+|..+..|+..+.... .
T Consensus        31 ~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~  110 (210)
T PLN03108         31 FQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA  110 (210)
T ss_pred             CCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCC
Confidence            456788999999998889999999999999999999999999999999999999999999999999999998887654 5


Q ss_pred             CCCEEEEEeCCCCCCc-ccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           82 NIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      +.|+++|+||+|+.+. .+.. +..++++.++++++++||++|.||+++|.++++.+...
T Consensus       111 ~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~~~~  170 (210)
T PLN03108        111 NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKK  170 (210)
T ss_pred             CCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            7999999999999753 3443 35678888899999999999999999999999998754

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.92  E-value=8.6e-24  Score=153.69  Aligned_cols=134  Identities=27%  Similarity=0.431  Sum_probs=114.9

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      +...|.||++ +...+.+.+++..+.+++|||||+++|..++..++++++++++|||++++.+|+.+..|...+.+..  
T Consensus        25 ~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~  103 (164)
T smart00173       25 FVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDR  103 (164)
T ss_pred             CCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence            4557788887 4445677788899999999999999999999999999999999999999999999999998887654  


Q ss_pred             CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854           81 ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                      .+.|+++|+||+|+.+ +....+ ...+++.++.+++++||++|.|++++|+++++.+.
T Consensus       104 ~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  162 (164)
T smart00173      104 DDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREIR  162 (164)
T ss_pred             CCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence            4789999999999975 333433 44677788899999999999999999999998764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd01863 Rab18 Rab18 subfamily

Probab=99.92  E-value=1.4e-23  Score=152.12  Aligned_cols=132  Identities=36%  Similarity=0.562  Sum_probs=117.8

Q ss_pred             CccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--C
Q 029854            4 SVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--E   81 (186)
Q Consensus         4 ~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~   81 (186)
                      ...+.||+|.++....+.+++..+.+.+|||+|++.+..++..+++++|++++|||++++.+|+.+..|+..+....  .
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~  105 (161)
T cd01863          26 DPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNN  105 (161)
T ss_pred             CcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCC
Confidence            45689999999998888888889999999999999999999999999999999999999999999999999988764  5


Q ss_pred             CCCEEEEEeCCCCCCcccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHH
Q 029854           82 NIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  135 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  135 (186)
                      +.|+++|+||+|+....... +...++...+++++++||++|.|++++|+.+++.
T Consensus       106 ~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~  160 (161)
T cd01863         106 DIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK  160 (161)
T ss_pred             CCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence            79999999999998555444 3557888889999999999999999999999875

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.92  E-value=8.5e-24  Score=158.33  Aligned_cols=135  Identities=28%  Similarity=0.429  Sum_probs=123.0

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      +...|.||+. +.+.+.+.+++..+.+.|+||+|++.|..+...++++++++++||+++++.||+.+..+.+.+.+..  
T Consensus        28 f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~  106 (196)
T KOG0395|consen   28 FVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGR  106 (196)
T ss_pred             cccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCc
Confidence            4567999998 8888899999999999999999999999999999999999999999999999999999999996543  


Q ss_pred             CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           81 ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      ...|+++||||+|+.. +.+..+ ...++..++++|+|+||+.+.+++++|..|++.+..
T Consensus       107 ~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L~r~~~~  166 (196)
T KOG0395|consen  107 DDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYELVREIRL  166 (196)
T ss_pred             CCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHHHHHHHh
Confidence            4689999999999986 666655 568899999999999999999999999999998876

>cd01861 Rab6 Rab6 subfamily

Probab=99.92  E-value=1.1e-23  Score=152.49  Aligned_cols=133  Identities=30%  Similarity=0.486  Sum_probs=117.1

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC-
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~-   81 (186)
                      +...+.||+|.++....+.+++..+++++|||||+.++..++..++++++++|+|||++++.+|+.+..|+..+.+... 
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~  104 (161)
T cd01861          25 FDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGN  104 (161)
T ss_pred             CCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC
Confidence            4557899999999999999999889999999999999999999999999999999999999999999999999877653 


Q ss_pred             CCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHH
Q 029854           82 NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  135 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  135 (186)
                      +.|+++++||+|+.+ +....+ ...+++..+++++++||++|.|++++|.++.+.
T Consensus       105 ~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861         105 DVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             CCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            699999999999953 333443 456677778999999999999999999999875

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04142 RRP22 RRP22 subfamily

Probab=99.92  E-value=1.8e-23  Score=157.24  Aligned_cols=139  Identities=17%  Similarity=0.150  Sum_probs=113.5

Q ss_pred             CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCc--------cccccccCcEEEEEEeCCChhhHHhHHHHH
Q 029854            2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYYIHGQCAIIMFDVTARLTYKNVPTWH   73 (186)
Q Consensus         2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~--------~~~~~~~ad~vilv~D~~~~~s~~~i~~~~   73 (186)
                      +++..|.||++.+++...+.+++..+.++||||+|...+...        +...+++||++|+|||++++.||+.+..|+
T Consensus        24 ~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~  103 (198)
T cd04142          24 EFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLR  103 (198)
T ss_pred             CCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHH
Confidence            356679999998988778888999999999999998765322        334578999999999999999999999999


Q ss_pred             HHHHhhc----CCCCEEEEEeCCCCCC-cccChH-HHHHHH-HcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029854           74 RDLCRVC----ENIPIVLCGNKVDVKN-RQVKAK-QVTFHR-KKNLQYYEISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus        74 ~~~~~~~----~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                      +.+.+..    .+.|+++|+||+|+.. +.+..+ ...++. .++++|+++||++|.||+++|..+++.+...-
T Consensus       104 ~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~~~~~  177 (198)
T cd04142         104 QQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLISATTRG  177 (198)
T ss_pred             HHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHHHhhccC
Confidence            9887753    5799999999999965 333333 334543 56889999999999999999999999887653

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.92  E-value=1.3e-23  Score=152.64  Aligned_cols=125  Identities=17%  Similarity=0.262  Sum_probs=102.8

Q ss_pred             CccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--C
Q 029854            4 SVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--E   81 (186)
Q Consensus         4 ~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~   81 (186)
                      ...+.|| +..+ ...+.+++..+.+++|||+|++.     ..+++++|++++|||++++.||+++..|+..+....  .
T Consensus        26 ~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~   98 (158)
T cd04103          26 VQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNIS   98 (158)
T ss_pred             CCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC
Confidence            3455555 4455 46788899999999999999975     346789999999999999999999999999998775  5


Q ss_pred             CCCEEEEEeCCCCC---CcccChH-HHHHHHHc-CCcEEEeccCCCCCchHHHHHHHHH
Q 029854           82 NIPIVLCGNKVDVK---NRQVKAK-QVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARK  135 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~---~~~~~~~-~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~  135 (186)
                      +.|+++||||+|+.   .+.+..+ ..++++.. ++.|++|||++|.||+++|..+++.
T Consensus        99 ~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~  157 (158)
T cd04103          99 EIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQK  157 (158)
T ss_pred             CCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence            78999999999984   2444443 44777765 5899999999999999999999865

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.91  E-value=1.2e-23  Score=163.12  Aligned_cols=133  Identities=25%  Similarity=0.364  Sum_probs=113.2

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh---
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---   79 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~---   79 (186)
                      +...|.||++ ++..+.+.+++..+.++||||+|++.|..++..++.++|++|+|||++++.||+.+..|++.+.+.   
T Consensus        25 f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~  103 (247)
T cd04143          25 FEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSC  103 (247)
T ss_pred             CCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcc
Confidence            4557899998 777788889999999999999999999999999999999999999999999999999999998764   


Q ss_pred             -------cCCCCEEEEEeCCCCCC-cccChH-HHHHHHH-cCCcEEEeccCCCCCchHHHHHHHHHH
Q 029854           80 -------CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRK-KNLQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        80 -------~~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                             ..+.|+++|+||+|+.. +.+..+ ..+++.. .++.++++||++|.||+++|.+|+...
T Consensus       104 ~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~  170 (247)
T cd04143         104 LKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLA  170 (247)
T ss_pred             cccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence                   14789999999999974 444433 3344443 357899999999999999999999865

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04135 Tc10 TC10 subfamily

Probab=99.91  E-value=4.9e-23  Score=151.18  Aligned_cols=133  Identities=21%  Similarity=0.283  Sum_probs=112.3

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhcC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCE   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~~   81 (186)
                      +...|.||++.. +...+.+++..+.+++|||+|++.|..++..++++++++|+|||++++.+|+.+. .|+..+....+
T Consensus        25 ~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~  103 (174)
T cd04135          25 FPEEYVPTVFDH-YAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP  103 (174)
T ss_pred             CCCCCCCceeee-eEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC
Confidence            445688998744 4457788999999999999999999999999999999999999999999999985 68888876667


Q ss_pred             CCCEEEEEeCCCCCCc-------------ccCh-HHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHH
Q 029854           82 NIPIVLCGNKVDVKNR-------------QVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~-------------~~~~-~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      +.|+++|+||+|+.+.             .+.. +...+++..+. ++++|||++|.|++++|+.+++.+
T Consensus       104 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~  173 (174)
T cd04135         104 NVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILAI  173 (174)
T ss_pred             CCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence            8999999999998642             2222 34567777775 799999999999999999999875

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd01892 Miro2 Miro2 subfamily

Probab=99.91  E-value=2.6e-23  Score=152.60  Aligned_cols=133  Identities=16%  Similarity=0.089  Sum_probs=114.0

Q ss_pred             ccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC
Q 029854            5 VWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP   84 (186)
Q Consensus         5 ~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p   84 (186)
                      ..|.||+|.++....+.+++..+.+.+||++|++.+..++..++++||++|+|||++++.+|+.+..|+..+... .+.|
T Consensus        32 ~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~-~~~p  110 (169)
T cd01892          32 NAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFML-GEIP  110 (169)
T ss_pred             ccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccC-CCCe
Confidence            679999999998888888999999999999999999999999999999999999999999999998998876432 4799


Q ss_pred             EEEEEeCCCCCCc-cc-ChHHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           85 IVLCGNKVDVKNR-QV-KAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        85 ~ilv~nK~Dl~~~-~~-~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      +++|+||+|+.+. .. ..+...+++.+++ .++++||++|.|++++|..+++.+..
T Consensus       111 ~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~~  167 (169)
T cd01892         111 CLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAAQY  167 (169)
T ss_pred             EEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHhhC
Confidence            9999999999643 22 2234466777776 47999999999999999999998763

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.91  E-value=3.7e-23  Score=150.12  Aligned_cols=133  Identities=32%  Similarity=0.552  Sum_probs=118.3

Q ss_pred             CccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-CC
Q 029854            4 SVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-EN   82 (186)
Q Consensus         4 ~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~~   82 (186)
                      ...+.||+|.++..+.+.+++..+.+.+|||+|++++..++..++++++++|+|||++++.+|.....|+..+.... .+
T Consensus        27 ~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~  106 (163)
T cd01860          27 SENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPN  106 (163)
T ss_pred             CCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC
Confidence            44689999999999999999999999999999999999999999999999999999999999999999999988776 67


Q ss_pred             CCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029854           83 IPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        83 ~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      .|+++++||+|+.. +.... ....++...+++++++||++|.|+.++|.++++.+
T Consensus       107 ~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd01860         107 IIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAKKL  162 (163)
T ss_pred             CeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            99999999999873 33333 34567778889999999999999999999999876

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>PLN03118 Rab family protein; Provisional

Probab=99.91  E-value=4.1e-23  Score=156.66  Aligned_cols=137  Identities=31%  Similarity=0.492  Sum_probs=117.4

Q ss_pred             ccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHH-HHHHHHhhc--C
Q 029854            5 VWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVC--E   81 (186)
Q Consensus         5 ~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~-~~~~~~~~~--~   81 (186)
                      ..+.||+|.++....+.+++..+.+.||||||+++|..++..+++++|++|+|||++++.+|+.+.. |...+....  .
T Consensus        40 ~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~  119 (211)
T PLN03118         40 EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQ  119 (211)
T ss_pred             CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            3678999999998888889989999999999999999999999999999999999999999999875 666665443  4


Q ss_pred             CCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCC
Q 029854           82 NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN  141 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  141 (186)
                      +.|+++|+||+|+.. +.+.. +...++..++++|+++||++|.|++++|.+|++.+...+.
T Consensus       120 ~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~~~~  181 (211)
T PLN03118        120 DCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEVPS  181 (211)
T ss_pred             CCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence            679999999999974 33333 3446777888999999999999999999999999977653

>cd04158 ARD1 ARD1 subfamily

Probab=99.91  E-value=1.1e-23  Score=154.46  Aligned_cols=133  Identities=20%  Similarity=0.287  Sum_probs=107.9

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCCC
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENI   83 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~~   83 (186)
                      .|.||+|.++...    +...+.+++|||||+.++..++..+++++|++++|||++++.+|.++..|+..+...  ..+.
T Consensus        26 ~~~~T~~~~~~~~----~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~  101 (169)
T cd04158          26 QPIPTIGFNVETV----EYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDA  101 (169)
T ss_pred             CcCCcCceeEEEE----EECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCC
Confidence            5889999888633    235689999999999999999999999999999999999999999999998888754  2468


Q ss_pred             CEEEEEeCCCCCCcccChHHHHHHHHcC------CcEEEeccCCCCCchHHHHHHHHHHhCCCCc
Q 029854           84 PIVLCGNKVDVKNRQVKAKQVTFHRKKN------LQYYEISAKSNYNFEKPFLYLARKLAGDPNL  142 (186)
Q Consensus        84 p~ilv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~  142 (186)
                      |++||+||+|+.+.....+..+++...+      +.+++|||++|.||+++|++|++.+.+...+
T Consensus       102 piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~~~~~  166 (169)
T cd04158         102 LLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVAAGVL  166 (169)
T ss_pred             CEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhhcccc
Confidence            9999999999975433333444443222      2578999999999999999999988877654

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.91  E-value=7.5e-24  Score=157.19  Aligned_cols=129  Identities=20%  Similarity=0.230  Sum_probs=101.1

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCCC
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENI   83 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~~   83 (186)
                      .+.||+|.++..  +  +...+.+++|||||++++..+|..++++||++|+|||+++++++..+..|+..+...  .++.
T Consensus        44 ~~~pt~g~~~~~--~--~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~  119 (181)
T PLN00223         44 TTIPTIGFNVET--V--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDA  119 (181)
T ss_pred             cccCCcceeEEE--E--EECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCC
Confidence            478999988753  2  335689999999999999999999999999999999999999999888777776542  2579


Q ss_pred             CEEEEEeCCCCCCcccChHHHHHHHHcC-----CcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           84 PIVLCGNKVDVKNRQVKAKQVTFHRKKN-----LQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        84 p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      |++|++||+|+++.....+......-..     +.++++||++|.||.++|++|++.+..
T Consensus       120 piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~~  179 (181)
T PLN00223        120 VLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN  179 (181)
T ss_pred             CEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence            9999999999976532222222211111     235689999999999999999988754

>cd01862 Rab7 Rab7 subfamily

Probab=99.91  E-value=5.4e-23  Score=150.37  Aligned_cols=137  Identities=31%  Similarity=0.567  Sum_probs=118.8

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC-
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~-   81 (186)
                      +...+.+|+|.++..+.+.+.+..+.+++||+||++.|..++..++++++++|+|||++++.+|+.+..|...+..... 
T Consensus        25 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~  104 (172)
T cd01862          25 FSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASP  104 (172)
T ss_pred             CCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCc
Confidence            4567789999999999999999999999999999999999999999999999999999999999999899888766543 


Q ss_pred             ----CCCEEEEEeCCCCCC-cccChH-HHHHHHHcC-CcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           82 ----NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        82 ----~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                          +.|+++|+||+|+.. .....+ ...+++..+ .+++++||++|.|++++|.++.+.+.+.
T Consensus       105 ~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~  169 (172)
T cd01862         105 SDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARKALEQ  169 (172)
T ss_pred             cCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence                799999999999973 333333 446777776 7899999999999999999999988765

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04149 Arf6 Arf6 subfamily

Probab=99.91  E-value=5.7e-24  Score=155.96  Aligned_cols=125  Identities=18%  Similarity=0.239  Sum_probs=100.0

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCCC
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENI   83 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~~   83 (186)
                      .+.||+|.++....    ...+.+++|||+|+++|..++..++++|+++|+|||++++.+|.++..|+..+...  ..+.
T Consensus        36 ~~~~t~g~~~~~~~----~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~  111 (168)
T cd04149          36 TTIPTVGFNVETVT----YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDA  111 (168)
T ss_pred             cccCCcccceEEEE----ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCC
Confidence            47899998875332    35689999999999999999999999999999999999999999988887777543  3578


Q ss_pred             CEEEEEeCCCCCCcccChHHHHHHH-----HcCCcEEEeccCCCCCchHHHHHHHH
Q 029854           84 PIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFEKPFLYLAR  134 (186)
Q Consensus        84 p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~l~~  134 (186)
                      |++||+||+|+.+.....+...++.     ...++++++||++|.|++++|.+|.+
T Consensus       112 piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~  167 (168)
T cd04149         112 LLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS  167 (168)
T ss_pred             cEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence            9999999999975432233333321     12246899999999999999999874

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04177 RSR1 RSR1 subgroup

Probab=99.90  E-value=9.5e-23  Score=149.15  Aligned_cols=134  Identities=26%  Similarity=0.424  Sum_probs=114.5

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      +...|.||++..+ .+.+.+++..+.+++|||+|+++|..+++.++++++++++|||++++.+++.+..|...+.+..  
T Consensus        26 ~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~  104 (168)
T cd04177          26 FIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDS  104 (168)
T ss_pred             CCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC
Confidence            3456889998655 5777888999999999999999999999999999999999999999999999999999887643  


Q ss_pred             CCCCEEEEEeCCCCCC-cccCh-HHHHHHHHcC-CcEEEeccCCCCCchHHHHHHHHHHh
Q 029854           81 ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                      .+.|+++++||+|+.+ +.... +...+++.++ ++++++||++|.|+.++|.++++++.
T Consensus       105 ~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~~  164 (168)
T cd04177         105 DNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQII  164 (168)
T ss_pred             CCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHHHHh
Confidence            5799999999999974 33333 3446677777 78999999999999999999998764

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.90  E-value=1.3e-22  Score=149.11  Aligned_cols=133  Identities=27%  Similarity=0.445  Sum_probs=111.2

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhcC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCE   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~~   81 (186)
                      +...|.||++..+. ..+.+++..+.+.||||+|++.|..++..+++++|++++|||++++.+|+.+. .|+..+.+..+
T Consensus        26 ~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~  104 (175)
T cd01870          26 FPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP  104 (175)
T ss_pred             CCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC
Confidence            45578999987765 46678889999999999999999999999999999999999999999999885 69888887767


Q ss_pred             CCCEEEEEeCCCCCCcc-------------cC-hHHHHHHHHcC-CcEEEeccCCCCCchHHHHHHHHHH
Q 029854           82 NIPIVLCGNKVDVKNRQ-------------VK-AKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~~-------------~~-~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      +.|+++|+||+|+.+..             +. .+..++++..+ .++++|||++|.|++++|.++++.+
T Consensus       105 ~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~  174 (175)
T cd01870         105 NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRAA  174 (175)
T ss_pred             CCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence            89999999999986421             11 22345666665 4799999999999999999998764

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.90  E-value=7.3e-23  Score=149.18  Aligned_cols=133  Identities=18%  Similarity=0.290  Sum_probs=111.2

Q ss_pred             CccccccceEEEEEEEEEECCeEEEEEEEeCCCcccc-CCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            4 SVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         4 ~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      ...|.||++..+ ...+.+++..+.+++|||+|++.+ ......+++++|++|+|||++++.||+.+..|+..+....  
T Consensus        25 ~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  103 (165)
T cd04146          25 IGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKR  103 (165)
T ss_pred             ccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcC
Confidence            456888887555 456778999999999999999863 4567788999999999999999999999999998887754  


Q ss_pred             -CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCC-CchHHHHHHHHHHh
Q 029854           81 -ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNY-NFEKPFLYLARKLA  137 (186)
Q Consensus        81 -~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~  137 (186)
                       .+.|+++|+||+|+.+ +.+..+ ..++++..+.+|+++||++|. ||+++|..+++.+.
T Consensus       104 ~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~~  164 (165)
T cd04146         104 DREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHELCREVR  164 (165)
T ss_pred             CCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHHHHHHh
Confidence             4799999999999864 344433 457888888999999999995 99999999998764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.90  E-value=3e-23  Score=153.08  Aligned_cols=127  Identities=23%  Similarity=0.303  Sum_probs=101.0

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCCC
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENI   83 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~~   83 (186)
                      .+.||+|.++.....    ..+.+++|||||++++..++..++++|+++|+|||++++.+++.+..|+..+...  ..+.
T Consensus        40 ~~~~t~~~~~~~~~~----~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~  115 (175)
T smart00177       40 TTIPTIGFNVETVTY----KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDA  115 (175)
T ss_pred             CcCCccccceEEEEE----CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCC
Confidence            578999998864432    5689999999999999999999999999999999999999999988888877543  2578


Q ss_pred             CEEEEEeCCCCCCcccChHHHHHH-----HHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029854           84 PIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        84 p~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      |++||+||+|+.+.....+.....     +...+.++++||++|.|++++|++|...+
T Consensus       116 piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~  173 (175)
T smart00177      116 VILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL  173 (175)
T ss_pred             cEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            999999999997543222222211     11123577899999999999999998775

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.90  E-value=2.1e-23  Score=151.56  Aligned_cols=125  Identities=22%  Similarity=0.293  Sum_probs=98.1

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCCC
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENI   83 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~~   83 (186)
                      .|.||+|.++....    ...+.+++|||+|++++..++..++++||++|+|||++++.+|..+..|+..+...  ..+.
T Consensus        27 ~~~pt~g~~~~~~~----~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~  102 (159)
T cd04150          27 TTIPTIGFNVETVE----YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDA  102 (159)
T ss_pred             ccCCCCCcceEEEE----ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCC
Confidence            47899998875332    25689999999999999999999999999999999999999999988877776543  2468


Q ss_pred             CEEEEEeCCCCCCcccChHHH-HHH----HHcCCcEEEeccCCCCCchHHHHHHHH
Q 029854           84 PIVLCGNKVDVKNRQVKAKQV-TFH----RKKNLQYYEISAKSNYNFEKPFLYLAR  134 (186)
Q Consensus        84 p~ilv~nK~Dl~~~~~~~~~~-~~~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~  134 (186)
                      |++|++||+|+.+.....+.. .+.    ...++.++++||++|.||+++|++|..
T Consensus       103 piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~  158 (159)
T cd04150         103 VLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN  158 (159)
T ss_pred             CEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence            999999999997543222222 221    112345789999999999999999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04148 RGK RGK subfamily

Probab=99.90  E-value=3.4e-22  Score=152.75  Aligned_cols=136  Identities=19%  Similarity=0.193  Sum_probs=114.9

Q ss_pred             ccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccc-cCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--C
Q 029854            5 VWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI-HGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--E   81 (186)
Q Consensus         5 ~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~-~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~   81 (186)
                      ..|.||++.++..+++.+++..+.+++|||+|++.  .+...+++ ++|++++|||++++.||+.+..|+..+.+..  .
T Consensus        28 ~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~  105 (221)
T cd04148          28 HAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLE  105 (221)
T ss_pred             cCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC
Confidence            57889998888888999999999999999999982  33455667 9999999999999999999999999887764  5


Q ss_pred             CCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCCc
Q 029854           82 NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNL  142 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~  142 (186)
                      +.|+++|+||+|+.+ +.+..+ ...++..++++++++||++|.||+++|+++++.+......
T Consensus       106 ~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~~~~~~  168 (221)
T cd04148         106 DRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQIRLRRDS  168 (221)
T ss_pred             CCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHhhhcc
Confidence            799999999999964 444433 4577777889999999999999999999999999754433

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.90  E-value=2e-23  Score=152.51  Aligned_cols=128  Identities=13%  Similarity=0.051  Sum_probs=105.1

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN   82 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~   82 (186)
                      +...|.||+|.++.    .+++..+.+.+|||+|+++|..++..++++||++|+|||++++.+|..++.|+..+....++
T Consensus        24 ~~~~~~pt~g~~~~----~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~   99 (164)
T cd04162          24 SLESVVPTTGFNSV----AIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPD   99 (164)
T ss_pred             CcccccccCCcceE----EEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCC
Confidence            45678999997643    34567799999999999999999999999999999999999999999999998888765578


Q ss_pred             CCEEEEEeCCCCCCcccChH------HHHHHHHcCCcEEEeccCC------CCCchHHHHHHHH
Q 029854           83 IPIVLCGNKVDVKNRQVKAK------QVTFHRKKNLQYYEISAKS------NYNFEKPFLYLAR  134 (186)
Q Consensus        83 ~p~ilv~nK~Dl~~~~~~~~------~~~~~~~~~~~~~~~Sa~~------~~gi~~l~~~l~~  134 (186)
                      .|+++|+||+|+.......+      ...++++.++.++++||++      ++||+++|..++.
T Consensus       100 ~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~  163 (164)
T cd04162         100 LPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLIN  163 (164)
T ss_pred             CcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence            99999999999975332221      2345555677889888888      9999999998863

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04114 Rab30 Rab30 subfamily

Probab=99.89  E-value=4.9e-22  Score=145.08  Aligned_cols=133  Identities=33%  Similarity=0.571  Sum_probs=115.3

Q ss_pred             CccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-CC
Q 029854            4 SVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-EN   82 (186)
Q Consensus         4 ~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~~   82 (186)
                      ...+.||+|.++....+.+++..+.+.+||++|++.|...+..+++.++++++|||+++..+|+.+..|+..+.... .+
T Consensus        33 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~  112 (169)
T cd04114          33 PPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNK  112 (169)
T ss_pred             CCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC
Confidence            34678999999998899999999999999999999999999999999999999999999999999999999887765 36


Q ss_pred             CCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029854           83 IPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        83 ~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      .|+++|+||+|+.+ +.+... ...+.+....+++++||++|.|+.++|+++++.+
T Consensus       113 ~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~  168 (169)
T cd04114         113 VITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL  168 (169)
T ss_pred             CeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence            99999999999974 444444 3355566668899999999999999999999865

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04123 Rab21 Rab21 subfamily

Probab=99.89  E-value=5.4e-22  Score=143.38  Aligned_cols=134  Identities=28%  Similarity=0.483  Sum_probs=116.8

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC-
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~-   81 (186)
                      +...+.+|++.++....+.+.+..+.+.+|||+|++.+..++..++++++++++|||++++.+++.+..|++.+..... 
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~  104 (162)
T cd04123          25 FNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN  104 (162)
T ss_pred             CCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC
Confidence            3456778998899888888888889999999999999999999999999999999999999999999999999888764 


Q ss_pred             CCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029854           82 NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      +.|+++++||+|+.. ++...+ ..++++..+.+++++||++|.|++++|+++.+.+
T Consensus       105 ~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~~  161 (162)
T cd04123         105 NISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM  161 (162)
T ss_pred             CCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            689999999999974 333333 4466777889999999999999999999998875

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04129 Rho2 Rho2 subfamily

Probab=99.89  E-value=1.1e-21  Score=146.18  Aligned_cols=137  Identities=24%  Similarity=0.329  Sum_probs=114.7

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhcC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCE   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~~   81 (186)
                      +...+.||++..+. ..+.+++..+.+.+|||+|++.|..++..++++++++++|||+++..+|+.+. .|+..+.+..+
T Consensus        26 ~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~  104 (187)
T cd04129          26 FPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP  104 (187)
T ss_pred             CCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC
Confidence            34567889876665 46677888899999999999999888888899999999999999999999986 69999988777


Q ss_pred             CCCEEEEEeCCCCCCc-----------ccC-hHHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029854           82 NIPIVLCGNKVDVKNR-----------QVK-AKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~-----------~~~-~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                      +.|+++|+||+|+.+.           .+. .+...+++..+. +|++|||++|.||+++|.++++.+....
T Consensus       105 ~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~  176 (187)
T cd04129         105 NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRAALLVR  176 (187)
T ss_pred             CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHHhccc
Confidence            8999999999998542           111 234577788875 8999999999999999999998886553

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.88  E-value=2.8e-22  Score=148.90  Aligned_cols=134  Identities=17%  Similarity=0.202  Sum_probs=107.6

Q ss_pred             cccccceEEEEEEEEEE-CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CC
Q 029854            6 WGKATIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--EN   82 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~   82 (186)
                      .+.||+|.++....+.+ ++..+.+.+|||+|++++..++..++++|+++|+|||+++..+++.+..|+..+....  .+
T Consensus        30 ~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~  109 (183)
T cd04152          30 NTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQG  109 (183)
T ss_pred             CcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCC
Confidence            35799998888777765 4567999999999999999999999999999999999999999998888888877643  47


Q ss_pred             CCEEEEEeCCCCCCcccChHHHHHHH--H----cCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           83 IPIVLCGNKVDVKNRQVKAKQVTFHR--K----KNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        83 ~p~ilv~nK~Dl~~~~~~~~~~~~~~--~----~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      .|+++|+||+|+.+.....+...+..  .    .+++++++||++|.|++++|++|++.+.+.
T Consensus       110 ~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~~  172 (183)
T cd04152         110 VPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMILKR  172 (183)
T ss_pred             CcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHHHH
Confidence            99999999999865322222222221  1    124688999999999999999999888643

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.88  E-value=2.6e-22  Score=148.99  Aligned_cols=130  Identities=18%  Similarity=0.270  Sum_probs=100.9

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCCC
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENI   83 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~~   83 (186)
                      .+.||+|.++....    ...+.+++|||+|++++..++..+++++|++|+|||++++.+|.....|+..+...  ..+.
T Consensus        44 ~~~~T~~~~~~~~~----~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~  119 (182)
T PTZ00133         44 TTIPTIGFNVETVE----YKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDA  119 (182)
T ss_pred             ccCCccccceEEEE----ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCC
Confidence            47899998875432    35689999999999999999999999999999999999999999888777766443  2568


Q ss_pred             CEEEEEeCCCCCCcccChHHHHHH-----HHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           84 PIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        84 p~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      |++||+||+|+.+.....+.....     ....+.++++||++|.|++++|++|.+.+..+
T Consensus       120 piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~~  180 (182)
T PTZ00133        120 VLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIKKS  180 (182)
T ss_pred             CEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHHHHh
Confidence            999999999996532222221111     11123567999999999999999999887643

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.88  E-value=1.4e-21  Score=141.62  Aligned_cols=135  Identities=27%  Similarity=0.450  Sum_probs=115.1

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      +...+.||++..+ .+...+++..+.+.+|||+|+..+..++..++++++++++|||++++.+|+.+..|...+....  
T Consensus        25 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  103 (164)
T cd04139          25 FVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDD  103 (164)
T ss_pred             CccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence            3457888987555 4667789999999999999999999999999999999999999999999999999999888763  


Q ss_pred             CCCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           81 ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      .+.|+++|+||+|+.+ ..... ....++..++++++++||++|.|++++|+.+++.+.+
T Consensus       104 ~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  163 (164)
T cd04139         104 DNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVREIRQ  163 (164)
T ss_pred             CCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence            5799999999999975 33332 3446777788999999999999999999999987753

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd00154 Rab Rab family

Probab=99.88  E-value=1.1e-21  Score=140.75  Aligned_cols=131  Identities=36%  Similarity=0.634  Sum_probs=116.0

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...+.||+|.++....+.+++..+.+.+||+||+..+...+..+++++|++|+|+|++++.++..+..|+..+.... .
T Consensus        25 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~  104 (159)
T cd00154          25 FDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPE  104 (159)
T ss_pred             CCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC
Confidence            445578999999999999999999999999999999999999999999999999999999999999999999998876 6


Q ss_pred             CCCEEEEEeCCCCC-CcccC-hHHHHHHHHcCCcEEEeccCCCCCchHHHHHHH
Q 029854           82 NIPIVLCGNKVDVK-NRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  133 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~-~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  133 (186)
                      ..|+++++||+|+. ..... .+...++...+.+++++||++|.|++++|.++.
T Consensus       105 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154         105 NIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             CCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence            79999999999996 33333 335577777889999999999999999999886

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04154 Arl2 Arl2 subfamily

Probab=99.88  E-value=3.2e-22  Score=147.04  Aligned_cols=125  Identities=14%  Similarity=0.210  Sum_probs=100.0

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCCC
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENI   83 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~~   83 (186)
                      .+.||+|..+..  +.++  .+.+++|||||++.++.++..++++++++++|||++++.+|..+..|+..+...  ..+.
T Consensus        41 ~~~~t~g~~~~~--~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~  116 (173)
T cd04154          41 TISPTLGFQIKT--LEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGA  116 (173)
T ss_pred             CcCCccccceEE--EEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCC
Confidence            578999966544  3334  578999999999999999999999999999999999999999988888877543  2689


Q ss_pred             CEEEEEeCCCCCCcccChHHHHHHH-----HcCCcEEEeccCCCCCchHHHHHHHH
Q 029854           84 PIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFEKPFLYLAR  134 (186)
Q Consensus        84 p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~l~~  134 (186)
                      |+++|+||+|+.+.....+...++.     ..+++++++||++|.|++++|.+++.
T Consensus       117 p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  172 (173)
T cd04154         117 TLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD  172 (173)
T ss_pred             CEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence            9999999999975432233333332     23568999999999999999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.88  E-value=2.1e-21  Score=145.93  Aligned_cols=135  Identities=24%  Similarity=0.286  Sum_probs=111.7

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      +...|.||++ ++....+.+++..+.++||||+|+..|..++..++++||++|+|||++++.+|+.+..|+..+....  
T Consensus        24 ~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~  102 (198)
T cd04147          24 FEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKED  102 (198)
T ss_pred             CCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence            3456788886 5666778888888999999999999999999999999999999999999999999999998888765  


Q ss_pred             CCCCEEEEEeCCCCCC--cccChH-HHHHH-HHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           81 ENIPIVLCGNKVDVKN--RQVKAK-QVTFH-RKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~--~~~~~~-~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      .+.|+++|+||+|+..  +.+... ..+.. ...+.+++++||++|.|++++|+++++.+..
T Consensus       103 ~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  164 (198)
T cd04147         103 KFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLRQANL  164 (198)
T ss_pred             CCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHHHhhc
Confidence            4799999999999964  223222 22222 2445789999999999999999999998764

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.88  E-value=1.4e-24  Score=155.71  Aligned_cols=137  Identities=29%  Similarity=0.486  Sum_probs=126.3

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN   82 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~   82 (186)
                      +.++|.-|||++|....+.+++..+++++|||+||+.|..+.+.||++|.+++|||..+|+.||+.+..|.+.+...+..
T Consensus        45 fTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~  124 (246)
T KOG4252|consen   45 FTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETER  124 (246)
T ss_pred             cccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhcc
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEeCCCCCCc-ccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           83 IPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        83 ~p~ilv~nK~Dl~~~-~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      +|.++|-||+|+.+. +.... ...+++.++..++.+|++...|+..+|..|+..+.+.
T Consensus       125 IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLaeK~~q~  183 (246)
T KOG4252|consen  125 IPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLAEKLTQQ  183 (246)
T ss_pred             CCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence            999999999999864 44333 4578889999999999999999999999999888654

>cd04157 Arl6 Arl6 subfamily

Probab=99.88  E-value=3.4e-22  Score=144.80  Aligned_cols=127  Identities=24%  Similarity=0.344  Sum_probs=99.1

Q ss_pred             CccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc---
Q 029854            4 SVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---   80 (186)
Q Consensus         4 ~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~---   80 (186)
                      ...|.||+|..+...    ....+.+++|||||++++..++..++++++++|+|+|++++.++..+..|+..+.+..   
T Consensus        26 ~~~~~~t~g~~~~~~----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~  101 (162)
T cd04157          26 SQIIVPTVGFNVESF----EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIK  101 (162)
T ss_pred             cceecCccccceEEE----EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccc
Confidence            346889999765432    2356889999999999999999999999999999999999999988888888776532   


Q ss_pred             -CCCCEEEEEeCCCCCCcccChHHHHHH---H--HcCCcEEEeccCCCCCchHHHHHHHH
Q 029854           81 -ENIPIVLCGNKVDVKNRQVKAKQVTFH---R--KKNLQYYEISAKSNYNFEKPFLYLAR  134 (186)
Q Consensus        81 -~~~p~ilv~nK~Dl~~~~~~~~~~~~~---~--~~~~~~~~~Sa~~~~gi~~l~~~l~~  134 (186)
                       .+.|+++|+||+|+.+.....+.....   .  ...++++++||++|.|++++|++|..
T Consensus       102 ~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~  161 (162)
T cd04157         102 HRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQA  161 (162)
T ss_pred             cCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence             479999999999997543222221111   1  11245899999999999999999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.87  E-value=1.6e-21  Score=146.93  Aligned_cols=121  Identities=18%  Similarity=0.259  Sum_probs=101.0

Q ss_pred             CCccccccceEEEEEEEEEEC-----CeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHH
Q 029854            3 VSVWGKATIGVEVHPLDFFTN-----CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC   77 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~-----~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~   77 (186)
                      +...|.||+|.++..+.+.++     +..+.++||||+|+++|..++..++++++++|+|||++++.||+++..|+..+.
T Consensus        25 f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~  104 (202)
T cd04102          25 VLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEAL  104 (202)
T ss_pred             CCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHH
Confidence            456789999999988877764     578999999999999999999999999999999999999999999999999997


Q ss_pred             hhc--------------------CCCCEEEEEeCCCCCCc-ccChH-----HHHHHHHcCCcEEEeccCCCC
Q 029854           78 RVC--------------------ENIPIVLCGNKVDVKNR-QVKAK-----QVTFHRKKNLQYYEISAKSNY  123 (186)
Q Consensus        78 ~~~--------------------~~~p~ilv~nK~Dl~~~-~~~~~-----~~~~~~~~~~~~~~~Sa~~~~  123 (186)
                      +..                    .+.|++|||||+|+.+. .+..+     ...++...+.+.++.++.++.
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i~~~c~~~~  176 (202)
T cd04102         105 NKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNAEEINLNCTNGR  176 (202)
T ss_pred             HhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHHHhcCCceEEEecCCcc
Confidence            631                    36899999999999643 33322     235677789999888887654

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd00157 Rho Rho (Ras homology) family

Probab=99.86  E-value=1.3e-20  Score=137.55  Aligned_cols=130  Identities=24%  Similarity=0.394  Sum_probs=108.4

Q ss_pred             CccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhH-HHHHHHHHhhcCC
Q 029854            4 SVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCEN   82 (186)
Q Consensus         4 ~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i-~~~~~~~~~~~~~   82 (186)
                      ...|.||+... ....+.+++..+.+++|||||++.+..++..+++.+|++++|||++++.+|... ..|+..+.....+
T Consensus        26 ~~~~~~~~~~~-~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~  104 (171)
T cd00157          26 PTEYVPTVFDN-YSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPN  104 (171)
T ss_pred             CCCCCCceeee-eEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCC
Confidence            35678888644 445667789999999999999999999999999999999999999999999876 4688888887778


Q ss_pred             CCEEEEEeCCCCCCccc-------------ChHHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHH
Q 029854           83 IPIVLCGNKVDVKNRQV-------------KAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLAR  134 (186)
Q Consensus        83 ~p~ilv~nK~Dl~~~~~-------------~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~  134 (186)
                      .|+++|+||+|+.....             ......++..++. +++++||++|.|++++|.++++
T Consensus       105 ~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  170 (171)
T cd00157         105 VPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR  170 (171)
T ss_pred             CCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence            99999999999975331             1224466677776 8999999999999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.86  E-value=1.6e-21  Score=142.12  Aligned_cols=126  Identities=21%  Similarity=0.355  Sum_probs=101.9

Q ss_pred             ccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CC
Q 029854            5 VWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--EN   82 (186)
Q Consensus         5 ~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~   82 (186)
                      ..+.||++.++....+    ..+.+++|||||++.+..++..++++++++++|+|+++..++.....|+..+.+..  .+
T Consensus        32 ~~~~~t~~~~~~~~~~----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~  107 (167)
T cd04160          32 SKITPTVGLNIGTIEV----GNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEG  107 (167)
T ss_pred             cccCCccccceEEEEE----CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcC
Confidence            4678999998865444    36789999999999999999999999999999999999989988888888876642  57


Q ss_pred             CCEEEEEeCCCCCCcccChHHHHHHHH-------cCCcEEEeccCCCCCchHHHHHHHH
Q 029854           83 IPIVLCGNKVDVKNRQVKAKQVTFHRK-------KNLQYYEISAKSNYNFEKPFLYLAR  134 (186)
Q Consensus        83 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~gi~~l~~~l~~  134 (186)
                      .|+++++||+|+.+.....+...+...       .+++++++||++|.|+++++++|++
T Consensus       108 ~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         108 VPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE  166 (167)
T ss_pred             CCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence            999999999998764332333333222       2357999999999999999999875

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd00876 Ras Ras family

Probab=99.86  E-value=1e-20  Score=136.43  Aligned_cols=133  Identities=30%  Similarity=0.471  Sum_probs=114.2

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC-
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~-   81 (186)
                      +...+.||.+ +.....+.+++..+.+++||++|+..+..++..++++++++++|||++++.++.++..|...+..... 
T Consensus        24 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  102 (160)
T cd00876          24 FVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDD  102 (160)
T ss_pred             CCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence            4466788888 66677788888889999999999999999999999999999999999999999999999888877654 


Q ss_pred             -CCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029854           82 -NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        82 -~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                       ..|+++|+||+|+.. ..... ....++..++.+++++||++|.|++++|++|++.+
T Consensus       103 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~i  160 (160)
T cd00876         103 EDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVREI  160 (160)
T ss_pred             CCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhhC
Confidence             799999999999976 33333 34567777788999999999999999999998753

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.86  E-value=2.9e-21  Score=141.37  Aligned_cols=128  Identities=19%  Similarity=0.239  Sum_probs=101.7

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      +...|.||+|....  .+.+  ..+.+++|||||+..+..++..++++|+++|+|||+++..+|..+..|+..+....  
T Consensus        23 ~~~~~~~t~g~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~   98 (167)
T cd04161          23 IPKKVAPTVGFTPT--KLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRV   98 (167)
T ss_pred             CCccccCcccceEE--EEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccc
Confidence            45678999997644  3333  45889999999999999999999999999999999999999999999999887653  


Q ss_pred             CCCCEEEEEeCCCCCCcccChHHH------HHHHHcC--CcEEEeccCCC------CCchHHHHHHHH
Q 029854           81 ENIPIVLCGNKVDVKNRQVKAKQV------TFHRKKN--LQYYEISAKSN------YNFEKPFLYLAR  134 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~~~~~~~~~------~~~~~~~--~~~~~~Sa~~~------~gi~~l~~~l~~  134 (186)
                      .+.|+++|+||+|+.+.....+..      .++++.+  +.+++|||++|      .|+.+.|+||..
T Consensus        99 ~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~  166 (167)
T cd04161          99 SGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA  166 (167)
T ss_pred             cCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence            579999999999997643222211      2332233  46788999998      899999999974

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd01893 Miro1 Miro1 subfamily

Probab=99.86  E-value=1.9e-20  Score=136.78  Aligned_cols=121  Identities=17%  Similarity=0.221  Sum_probs=98.6

Q ss_pred             EEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhcCCCCEEEEEeCCCCCC
Q 029854           18 LDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN   96 (186)
Q Consensus        18 ~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~~~~p~ilv~nK~Dl~~   96 (186)
                      ....+++..+.+.+|||+|++.+...+..+++++|++++|||++++.+|+.+. .|+..+.....+.|+++|+||+|+.+
T Consensus        38 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~  117 (166)
T cd01893          38 IPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRD  117 (166)
T ss_pred             eeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence            44456778899999999999988888888899999999999999999999975 78888877667899999999999976


Q ss_pred             cccC----hHHHHHHHHcC--CcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           97 RQVK----AKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        97 ~~~~----~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      ....    .....++..++  .+++++||++|.|++++|..+.+.+..
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~~~  165 (166)
T cd01893         118 GSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAVLH  165 (166)
T ss_pred             ccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHhcC
Confidence            4432    12223333332  379999999999999999999987754

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.85  E-value=3e-20  Score=137.18  Aligned_cols=137  Identities=26%  Similarity=0.290  Sum_probs=114.9

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      +...+.||++..+ ...+.+++..+.+++|||||+++|..++..++..++++++|||+++..+|+.+..|+..+.+..  
T Consensus        26 ~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~  104 (180)
T cd04137          26 FVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGK  104 (180)
T ss_pred             CccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence            3456788887666 4567778888999999999999999999999999999999999999999999999988887753  


Q ss_pred             CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029854           81 ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                      .+.|+++|+||+|+.. +..... ...++..++.+++++||++|.|+.++|.++.+.+....
T Consensus       105 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~  166 (180)
T cd04137         105 ESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIEEIEKVE  166 (180)
T ss_pred             CCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            4789999999999974 333332 34566777889999999999999999999999987654

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04151 Arl1 Arl1 subfamily

Probab=99.85  E-value=6.9e-21  Score=137.87  Aligned_cols=125  Identities=18%  Similarity=0.269  Sum_probs=95.1

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCCC
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENI   83 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~~   83 (186)
                      .+.||+|.++....    +..+.+++|||||++.+..++..++++++++|+|+|++++.++.....|+..+.+.  ..+.
T Consensus        26 ~~~~t~~~~~~~~~----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (158)
T cd04151          26 TTIPTIGFNVETVT----YKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGA  101 (158)
T ss_pred             CcCCccCcCeEEEE----ECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCC
Confidence            46799998775332    35688999999999999999999999999999999999998887766665554332  2579


Q ss_pred             CEEEEEeCCCCCCcccChHHHH-HH----HHcCCcEEEeccCCCCCchHHHHHHHH
Q 029854           84 PIVLCGNKVDVKNRQVKAKQVT-FH----RKKNLQYYEISAKSNYNFEKPFLYLAR  134 (186)
Q Consensus        84 p~ilv~nK~Dl~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~  134 (186)
                      |+++|+||+|+.+.....+... +.    ...+.+++++||++|.|++++|++|++
T Consensus       102 piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  157 (158)
T cd04151         102 VLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN  157 (158)
T ss_pred             cEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence            9999999999975431122111 11    111246999999999999999999874

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.85  E-value=7.2e-21  Score=140.14  Aligned_cols=125  Identities=21%  Similarity=0.304  Sum_probs=98.2

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCC
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENI   83 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~   83 (186)
                      .+.||+|.++....+    ..+.+.+|||||++.+...+..+++++|++|+|+|++++.++.....|+..+.+..  .+.
T Consensus        42 ~~~~t~~~~~~~~~~----~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~  117 (174)
T cd04153          42 HTSPTIGSNVEEIVY----KNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKA  117 (174)
T ss_pred             CcCCccccceEEEEE----CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCC
Confidence            367999988754333    36889999999999999999999999999999999999999988877777765432  469


Q ss_pred             CEEEEEeCCCCCCcccChHHH-HHH----HHcCCcEEEeccCCCCCchHHHHHHHH
Q 029854           84 PIVLCGNKVDVKNRQVKAKQV-TFH----RKKNLQYYEISAKSNYNFEKPFLYLAR  134 (186)
Q Consensus        84 p~ilv~nK~Dl~~~~~~~~~~-~~~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~  134 (186)
                      |+++++||+|+.+.....+.. .+.    ...+++++++||++|.||+++|++|++
T Consensus       118 p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~  173 (174)
T cd04153         118 VLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS  173 (174)
T ss_pred             CEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence            999999999997632222221 221    223457899999999999999999874

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.85  E-value=3.4e-21  Score=139.46  Aligned_cols=126  Identities=18%  Similarity=0.272  Sum_probs=98.2

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCC
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENI   83 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~   83 (186)
                      .+.||+|.++....+   +..+.+.+|||+|++.+..++..++++++++|+|+|++++.++..+..|+..+.+..  .+.
T Consensus        26 ~~~~t~~~~~~~~~~---~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (160)
T cd04156          26 TTIPTVGFNVEMLQL---EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGV  102 (160)
T ss_pred             cccCccCcceEEEEe---CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCC
Confidence            457999977654332   356899999999999999999999999999999999999999999888888776532  579


Q ss_pred             CEEEEEeCCCCCCcccChHHHH------HHHHcCCcEEEeccCCCCCchHHHHHHHH
Q 029854           84 PIVLCGNKVDVKNRQVKAKQVT------FHRKKNLQYYEISAKSNYNFEKPFLYLAR  134 (186)
Q Consensus        84 p~ilv~nK~Dl~~~~~~~~~~~------~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  134 (186)
                      |+++|+||+|+.......+...      ++...++++++|||++|.|++++|++|.+
T Consensus       103 piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~  159 (160)
T cd04156         103 PVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS  159 (160)
T ss_pred             CEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence            9999999999964321122111      11223356899999999999999999864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.85  E-value=1.8e-20  Score=138.33  Aligned_cols=127  Identities=20%  Similarity=0.353  Sum_probs=103.7

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCCC
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENI   83 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~~   83 (186)
                      .+.||+|+++....+    ..+.+.+||.+|+..++.+|+.|+.+++++|||+|+++...+.+....+..+...  ..+.
T Consensus        41 ~~~pT~g~~~~~i~~----~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~  116 (175)
T PF00025_consen   41 ETIPTIGFNIEEIKY----KGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDI  116 (175)
T ss_dssp             EEEEESSEEEEEEEE----TTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTS
T ss_pred             ccCcccccccceeee----CcEEEEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccc
Confidence            478999999886665    5678899999999999999999999999999999999998888888777777664  2579


Q ss_pred             CEEEEEeCCCCCCcccChHHHHHHH------HcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029854           84 PIVLCGNKVDVKNRQVKAKQVTFHR------KKNLQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        84 p~ilv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      |++|++||+|+++.....+......      ...+.++.|||.+|.|+.+.|+||.+++
T Consensus       117 piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  117 PILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQI  175 (175)
T ss_dssp             EEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             eEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhcC
Confidence            9999999999986433333222111      2235689999999999999999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd01890 LepA LepA subfamily

Probab=99.85  E-value=1.2e-20  Score=138.97  Aligned_cols=124  Identities=15%  Similarity=0.183  Sum_probs=95.9

Q ss_pred             cceEEEEEEEEEE-----CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC
Q 029854           10 TIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP   84 (186)
Q Consensus        10 Tig~~~~~~~~~~-----~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p   84 (186)
                      +.|+++......+     ++..+.++||||||++.|..++..+++++|++|+|||+++..+++....|.....   .+.|
T Consensus        45 ~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~---~~~~  121 (179)
T cd01890          45 ERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE---NNLE  121 (179)
T ss_pred             HCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH---cCCC
Confidence            3466666554443     6778999999999999999999999999999999999999877776666643322   3789


Q ss_pred             EEEEEeCCCCCCcccChHHHHHHHHcCC---cEEEeccCCCCCchHHHHHHHHHH
Q 029854           85 IVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        85 ~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      +++|+||+|+.+........++++.+++   +++++||++|.|++++|+++.+.+
T Consensus       122 iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         122 IIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             EEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence            9999999998643221222355555565   489999999999999999998775

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=7.1e-20  Score=132.40  Aligned_cols=129  Identities=22%  Similarity=0.298  Sum_probs=106.5

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCC
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENI   83 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~   83 (186)
                      ...||||+++....+    +++++++||.+||++++.+|+.|+++.+++|||+|+++++.+.+.+.-+..+....  .+.
T Consensus        44 ttvPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~  119 (181)
T KOG0070|consen   44 TTVPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNA  119 (181)
T ss_pred             cCCCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCc
Confidence            448999999998887    69999999999999999999999999999999999999998888776666655543  589


Q ss_pred             CEEEEEeCCCCCCcccChHHHHHHHH-----cCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           84 PIVLCGNKVDVKNRQVKAKQVTFHRK-----KNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        84 p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      |+++.+||.|+++.-...+.......     ....+..|||.+|.|+.+.++++...+..
T Consensus       120 ~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~~  179 (181)
T KOG0070|consen  120 PLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLKK  179 (181)
T ss_pred             eEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHHHHHHHHHHHHhc
Confidence            99999999999876554443322211     23468899999999999999999988754

>PLN00023 GTP-binding protein; Provisional

Probab=99.84  E-value=4.7e-20  Score=146.17  Aligned_cols=110  Identities=20%  Similarity=0.351  Sum_probs=93.3

Q ss_pred             CCccccccceEEEEEEEEEECC-------------eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhH
Q 029854            3 VSVWGKATIGVEVHPLDFFTNC-------------GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV   69 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~-------------~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i   69 (186)
                      +...|.||+|+++..+.+.+++             ..+.++||||+|+++|..++..++++++++|+|||++++.+|+.+
T Consensus        46 F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL  125 (334)
T PLN00023         46 SIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSL  125 (334)
T ss_pred             cccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHH
Confidence            4567899999999888777642             569999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhc-------------CCCCEEEEEeCCCCCCc----c----cChHHHHHHHHcCC
Q 029854           70 PTWHRDLCRVC-------------ENIPIVLCGNKVDVKNR----Q----VKAKQVTFHRKKNL  112 (186)
Q Consensus        70 ~~~~~~~~~~~-------------~~~p~ilv~nK~Dl~~~----~----~~~~~~~~~~~~~~  112 (186)
                      ..|++.+....             .+.|++|||||+||.++    .    ..+++.+|++++++
T Consensus       126 ~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~~g~  189 (334)
T PLN00023        126 QKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGL  189 (334)
T ss_pred             HHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHHHHHHHHHHcCC
Confidence            99999998753             14899999999999653    2    12446689988874

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.83  E-value=3.8e-20  Score=133.72  Aligned_cols=126  Identities=20%  Similarity=0.316  Sum_probs=101.1

Q ss_pred             ccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CC
Q 029854            5 VWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--EN   82 (186)
Q Consensus         5 ~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~   82 (186)
                      ..+.||+|..+....+    ..+.+.+|||||++.+..++..++++++++++|||++++.++.....|+..+....  .+
T Consensus        25 ~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~  100 (158)
T cd00878          25 VTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKG  100 (158)
T ss_pred             CCCCCCcCcceEEEEE----CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCC
Confidence            4678899977754433    36789999999999999999999999999999999999999999888888776643  57


Q ss_pred             CCEEEEEeCCCCCCcccChHHHHHH-----HHcCCcEEEeccCCCCCchHHHHHHHH
Q 029854           83 IPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYLAR  134 (186)
Q Consensus        83 ~p~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~~  134 (186)
                      .|+++++||+|+.......+.....     .....+++++||++|.|++++|++|..
T Consensus       101 ~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~  157 (158)
T cd00878         101 VPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ  157 (158)
T ss_pred             CcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence            9999999999997543222222222     223467999999999999999999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd00879 Sar1 Sar1 subfamily

Probab=99.83  E-value=3e-20  Score=138.36  Aligned_cols=127  Identities=16%  Similarity=0.254  Sum_probs=99.5

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCC
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENI   83 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~   83 (186)
                      .|.||++.....  +.++  .+.+.+||+||+..+..++..++++++++++|+|+++..+|.....|+..+.+..  .+.
T Consensus        46 ~~~~T~~~~~~~--i~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~  121 (190)
T cd00879          46 QHVPTLHPTSEE--LTIG--NIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANV  121 (190)
T ss_pred             ccCCccCcceEE--EEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCC
Confidence            578899876543  4444  3678899999999998889999999999999999999999988888888876543  569


Q ss_pred             CEEEEEeCCCCCCcccChHHHHHHHH----------------cCCcEEEeccCCCCCchHHHHHHHHHH
Q 029854           84 PIVLCGNKVDVKNRQVKAKQVTFHRK----------------KNLQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        84 p~ilv~nK~Dl~~~~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      |+++++||+|+.......+...++..                ...++++|||++|.|++++|.+|++.+
T Consensus       122 pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~  190 (190)
T cd00879         122 PFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQYL  190 (190)
T ss_pred             CEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence            99999999999753222233333321                124689999999999999999998653

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.81  E-value=1.4e-19  Score=134.61  Aligned_cols=126  Identities=16%  Similarity=0.248  Sum_probs=97.8

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCCC
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENI   83 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~~   83 (186)
                      .+.||++.......  +  ..+.+.+|||||+..+..++..++++++++|+|+|++++.++.....|+..+.+.  ..+.
T Consensus        44 ~~~~t~~~~~~~~~--~--~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~  119 (184)
T smart00178       44 QHQPTQHPTSEELA--I--GNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATV  119 (184)
T ss_pred             ccCCccccceEEEE--E--CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCC
Confidence            46788887655432  3  3578899999999999999999999999999999999999998888888777653  2579


Q ss_pred             CEEEEEeCCCCCCcccChHHHHHH---H-H--------cCCcEEEeccCCCCCchHHHHHHHHH
Q 029854           84 PIVLCGNKVDVKNRQVKAKQVTFH---R-K--------KNLQYYEISAKSNYNFEKPFLYLARK  135 (186)
Q Consensus        84 p~ilv~nK~Dl~~~~~~~~~~~~~---~-~--------~~~~~~~~Sa~~~~gi~~l~~~l~~~  135 (186)
                      |+++|+||+|++......+..+..   . .        ....++.|||++|.|+++++++|..+
T Consensus       120 piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      120 PFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             CEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence            999999999997533222222211   1 0        12358999999999999999999865

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.81  E-value=3.5e-19  Score=127.78  Aligned_cols=128  Identities=21%  Similarity=0.355  Sum_probs=100.4

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      +...+.||+|.++....  .  ..+.+.+|||+|+..+..++..++++++++++|+|+++..++.....|+..+....  
T Consensus        24 ~~~~~~~t~~~~~~~~~--~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~   99 (159)
T cd04159          24 FSEDTIPTVGFNMRKVT--K--GNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSL   99 (159)
T ss_pred             CCcCccCCCCcceEEEE--E--CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhh
Confidence            45678999998887533  2  34889999999999999999999999999999999999999988877777765432  


Q ss_pred             CCCCEEEEEeCCCCCCcccChHHHHHH-----HHcCCcEEEeccCCCCCchHHHHHHHH
Q 029854           81 ENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYLAR  134 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~~  134 (186)
                      .+.|+++|+||+|+.+...........     ...+++++++||++|.|++++++++.+
T Consensus       100 ~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159         100 EGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             cCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence            578999999999987543222221111     122357899999999999999999875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.80  E-value=1.2e-18  Score=123.46  Aligned_cols=129  Identities=16%  Similarity=0.263  Sum_probs=106.3

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCCC
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENI   83 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~~   83 (186)
                      ...||.|+++....+    ..+++++||.+||..+++.|+.||..+|++|+|+|++++-.+++...-++.+...  ....
T Consensus        43 ~i~pt~gf~Iktl~~----~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~  118 (185)
T KOG0073|consen   43 TISPTLGFQIKTLEY----KGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGA  118 (185)
T ss_pred             ccCCccceeeEEEEe----cceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCC
Confidence            457999988887666    7889999999999999999999999999999999999999998887666665443  2578


Q ss_pred             CEEEEEeCCCCCCcccChHH------HHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           84 PIVLCGNKVDVKNRQVKAKQ------VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        84 p~ilv~nK~Dl~~~~~~~~~------~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      |++|++||.|++..-...+.      ..+++...++++.|||.+|+++.+.+.|++..+..
T Consensus       119 ~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~  179 (185)
T KOG0073|consen  119 PLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMS  179 (185)
T ss_pred             ceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHH
Confidence            99999999999853222221      24446667899999999999999999999988865

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=2.8e-18  Score=118.73  Aligned_cols=132  Identities=21%  Similarity=0.308  Sum_probs=106.8

Q ss_pred             CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--
Q 029854            2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--   79 (186)
Q Consensus         2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--   79 (186)
                      +.+...+||+|+++...++    +++.+..||.+|+++.+.+|++||.+..++|||+|+.+++..++.+.-+..+.+.  
T Consensus        40 ~~~~~~ipTvGFnvetVty----kN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~e  115 (180)
T KOG0071|consen   40 GQSVTTIPTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDRE  115 (180)
T ss_pred             CCCcccccccceeEEEEEe----eeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHh
Confidence            4566789999999998888    8999999999999999999999999999999999999988877776555444433  


Q ss_pred             cCCCCEEEEEeCCCCCCcccChHHH---HHH--HHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854           80 CENIPIVLCGNKVDVKNRQVKAKQV---TFH--RKKNLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus        80 ~~~~p~ilv~nK~Dl~~~~~~~~~~---~~~--~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                      ..+.|++|.+||.|++.....++..   ++-  +....-+..+||.+|.|+.+-|.++...+.
T Consensus       116 m~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswlsnn~~  178 (180)
T KOG0071|consen  116 MRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLSWLSNNLK  178 (180)
T ss_pred             hhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchhHHHHHHHHHhhcc
Confidence            2579999999999999765555543   222  222345779999999999999999987653

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.77  E-value=3.5e-18  Score=120.20  Aligned_cols=138  Identities=22%  Similarity=0.279  Sum_probs=120.2

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN   82 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~   82 (186)
                      .|.+|.-|.|+++..+++.+.+..+.+.|||.+|++++..+....-+++-+++|+||.+.+.++..+..|+++.+.....
T Consensus        45 ~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~Nkt  124 (205)
T KOG1673|consen   45 YDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKT  124 (205)
T ss_pred             hHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCc
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999988765


Q ss_pred             CCEEEEEeCCCCCC-------cccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029854           83 IPIVLCGNKVDVKN-------RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus        83 ~p~ilv~nK~Dl~~-------~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                      .--|+||+|.|+-=       ..+....+..++-.+.+.+.||+..+.||+.+|..+..++...+
T Consensus       125 AiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIFK~vlAklFnL~  189 (205)
T KOG1673|consen  125 AIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIFKIVLAKLFNLP  189 (205)
T ss_pred             cceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHHHHHHHHHhCCc
Confidence            55677899999731       12223344666777899999999999999999999998887654

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.77  E-value=6.6e-18  Score=123.08  Aligned_cols=113  Identities=13%  Similarity=0.111  Sum_probs=82.3

Q ss_pred             eEEEEEEEeCCCccccCCccc---------cccccCcEEEEEEeCCChhhH--HhHHHHHHHHHhhcCCCCEEEEEeCCC
Q 029854           25 GKIRFYCWDTAGQEKFGGLRD---------GYYIHGQCAIIMFDVTARLTY--KNVPTWHRDLCRVCENIPIVLCGNKVD   93 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~~~~~---------~~~~~ad~vilv~D~~~~~s~--~~i~~~~~~~~~~~~~~p~ilv~nK~D   93 (186)
                      ..+.++||||||+.......+         .....+|++|+|+|+++..++  +....|++.+.....+.|+++|+||+|
T Consensus        45 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~D  124 (168)
T cd01897          45 KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKID  124 (168)
T ss_pred             CceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccc
Confidence            457899999999853211101         011236899999999987654  555678888876656899999999999


Q ss_pred             CCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854           94 VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus        94 l~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                      +.+.....+..++....+.+++++||++|.|++++|+++.+.+.
T Consensus       125 l~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  168 (168)
T cd01897         125 LLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDEVKNKACELLL  168 (168)
T ss_pred             cCchhhHHHHHHhhhhccCceEEEEecccCCHHHHHHHHHHHhC
Confidence            97533222233445555678999999999999999999998763

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.77  E-value=3.9e-18  Score=118.88  Aligned_cols=132  Identities=18%  Similarity=0.278  Sum_probs=103.1

Q ss_pred             CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-
Q 029854            2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-   80 (186)
Q Consensus         2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-   80 (186)
                      ++..+-.||+|++....    +.+.+.+.+||.|||.+|+.+|+.|+++++++++|+|+.+++.+...+.-+..+.... 
T Consensus        44 ~~~edmiptvGfnmrk~----tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~  119 (186)
T KOG0075|consen   44 QYLEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPS  119 (186)
T ss_pred             cchhhhcccccceeEEe----ccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchh
Confidence            34566789999988754    4488999999999999999999999999999999999999887766555444444332 


Q ss_pred             -CCCCEEEEEeCCCCCCcccChHHHHHHH-----HcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854           81 -ENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus        81 -~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                       ...|+++.|||.|+++.-.......-+.     ...+.+|-+|++...||+.+.+|++++..
T Consensus       120 l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hsk  182 (186)
T KOG0075|consen  120 LTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHSK  182 (186)
T ss_pred             hcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHhh
Confidence             5799999999999987544333222111     11246999999999999999999998764

>cd04155 Arl3 Arl3 subfamily

Probab=99.76  E-value=5.7e-18  Score=124.06  Aligned_cols=122  Identities=16%  Similarity=0.305  Sum_probs=94.6

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCC
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENI   83 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~   83 (186)
                      .+.||.|.++....  .+  ...+.+||++|+..+...+..++++++++++|+|+++..++.....|+..+....  .+.
T Consensus        41 ~~~~t~g~~~~~i~--~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (173)
T cd04155          41 HITPTQGFNIKTVQ--SD--GFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGV  116 (173)
T ss_pred             ccCCCCCcceEEEE--EC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCC
Confidence            46789997765433  33  4678999999999988888899999999999999999988888777776665432  479


Q ss_pred             CEEEEEeCCCCCCcccChHHHHHHHHcC--------CcEEEeccCCCCCchHHHHHHHH
Q 029854           84 PIVLCGNKVDVKNRQVKAKQVTFHRKKN--------LQYYEISAKSNYNFEKPFLYLAR  134 (186)
Q Consensus        84 p~ilv~nK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~gi~~l~~~l~~  134 (186)
                      |+++++||+|+.+.....   .+....+        .+++++||++|.|++++|++|++
T Consensus       117 p~ivv~nK~D~~~~~~~~---~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  172 (173)
T cd04155         117 PVLVFANKQDLATAAPAE---EIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK  172 (173)
T ss_pred             CEEEEEECCCCccCCCHH---HHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence            999999999986432111   2222222        24789999999999999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.75  E-value=4.7e-20  Score=133.16  Aligned_cols=140  Identities=32%  Similarity=0.462  Sum_probs=119.7

Q ss_pred             CCCccccccceEEEEEEEEEECCe-EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc
Q 029854            2 NVSVWGKATIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC   80 (186)
Q Consensus         2 ~~~~~~~~Tig~~~~~~~~~~~~~-~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~   80 (186)
                      +++..|..|||++|..+.+..+.+ .++++|||.+||++|..|.+-|++.|++..+|||+++..+|+....|.+.+..-.
T Consensus        49 nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~  128 (229)
T KOG4423|consen   49 NFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKL  128 (229)
T ss_pred             HHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcc
Confidence            356789999999999888887654 4999999999999999999999999999999999999999999999999875432


Q ss_pred             -----CCCCEEEEEeCCCCCCcccChH---HHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhCCCC
Q 029854           81 -----ENIPIVLCGNKVDVKNRQVKAK---QVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAGDPN  141 (186)
Q Consensus        81 -----~~~p~ilv~nK~Dl~~~~~~~~---~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  141 (186)
                           .-.|+++.+||||.........   .-++++++++ ..+++|+|.+.|+.|+-..+++.+.-+..
T Consensus       129 qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni~Ea~r~lVe~~lvnd~  198 (229)
T KOG4423|consen  129 QLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNIPEAQRELVEKILVNDE  198 (229)
T ss_pred             cCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccChhHHHHHHHHHHHhhcc
Confidence                 2478999999999876444332   3377788886 59999999999999999999999987653

>cd04171 SelB SelB subfamily

Probab=99.74  E-value=3.1e-17  Score=118.72  Aligned_cols=121  Identities=15%  Similarity=0.040  Sum_probs=81.9

Q ss_pred             cccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCC---hhhHHhHHHHHHHHHhhcCCCC
Q 029854            8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA---RLTYKNVPTWHRDLCRVCENIP   84 (186)
Q Consensus         8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~---~~s~~~i~~~~~~~~~~~~~~p   84 (186)
                      .+++..+.....+.+.+ ...+++|||||+++|......++++||++++|+|+++   ..+++.+    ..+.. ....|
T Consensus        33 ~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~----~~~~~-~~~~~  106 (164)
T cd04171          33 KRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHL----EILEL-LGIKR  106 (164)
T ss_pred             ccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHH----HHHHH-hCCCc
Confidence            34333444334444442 4589999999999987766778889999999999987   3333322    22221 12349


Q ss_pred             EEEEEeCCCCCCcc----cChHHHHHHHH---cCCcEEEeccCCCCCchHHHHHHHH
Q 029854           85 IVLCGNKVDVKNRQ----VKAKQVTFHRK---KNLQYYEISAKSNYNFEKPFLYLAR  134 (186)
Q Consensus        85 ~ilv~nK~Dl~~~~----~~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~  134 (186)
                      +++++||+|+.+..    ...+..++...   .+.+++++||++|.|+++++..+.+
T Consensus       107 ~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         107 GLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             EEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence            99999999997532    11222233333   3578999999999999999998754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.72  E-value=4.3e-17  Score=140.18  Aligned_cols=125  Identities=14%  Similarity=0.148  Sum_probs=96.7

Q ss_pred             ceEEEEEEEEEE-----CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCE
Q 029854           11 IGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI   85 (186)
Q Consensus        11 ig~~~~~~~~~~-----~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~   85 (186)
                      .|+++....+.+     ++..+.+.||||||+.+|...+..+++.||++|+|+|+++..+++....|...+.   .+.|+
T Consensus        49 rGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~~ipi  125 (595)
T TIGR01393        49 RGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---NDLEI  125 (595)
T ss_pred             cCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---cCCCE
Confidence            366666554433     5677999999999999999999999999999999999999777776666654433   37899


Q ss_pred             EEEEeCCCCCCcccChHHHHHHHHcCC---cEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           86 VLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        86 ilv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      ++|+||+|+.+........++...+++   +++.+||++|.|++++|+++++.+..
T Consensus       126 IiViNKiDl~~~~~~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~  181 (595)
T TIGR01393       126 IPVINKIDLPSADPERVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRVPP  181 (595)
T ss_pred             EEEEECcCCCccCHHHHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence            999999999753222222345555555   48999999999999999999987753

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.72  E-value=1.4e-16  Score=121.13  Aligned_cols=137  Identities=29%  Similarity=0.378  Sum_probs=112.1

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChh-hHHhHHHHHHHHHhhc-
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVC-   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~-s~~~i~~~~~~~~~~~-   80 (186)
                      ++..|.||+|..+...+....+..+.+.+|||+|+++|+.++..|+.+++++++|||.++.. +++....|.+.+.... 
T Consensus        30 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~  109 (219)
T COG1100          30 FPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAP  109 (219)
T ss_pred             CcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCC
Confidence            45678899999999999988877999999999999999999999999999999999999955 5555679999998887 


Q ss_pred             CCCCEEEEEeCCCCCCccc-------------ChHH-HHHHHH---cCCcEEEeccC--CCCCchHHHHHHHHHHhCC
Q 029854           81 ENIPIVLCGNKVDVKNRQV-------------KAKQ-VTFHRK---KNLQYYEISAK--SNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~~~~-------------~~~~-~~~~~~---~~~~~~~~Sa~--~~~gi~~l~~~l~~~i~~~  139 (186)
                      ...|+++++||+|+.....             .... ...+..   ....++++|++  ++.|+.++|..++..+...
T Consensus       110 ~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~~  187 (219)
T COG1100         110 DDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLLEE  187 (219)
T ss_pred             CCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHHHh
Confidence            4799999999999986432             1111 111111   13348999999  9999999999999999754

>cd01898 Obg Obg subfamily

Probab=99.72  E-value=9.9e-17  Score=116.98  Aligned_cols=109  Identities=16%  Similarity=0.142  Sum_probs=84.5

Q ss_pred             EEEEEEeCCCcc----ccCCccccccc---cCcEEEEEEeCCCh-hhHHhHHHHHHHHHhhc---CCCCEEEEEeCCCCC
Q 029854           27 IRFYCWDTAGQE----KFGGLRDGYYI---HGQCAIIMFDVTAR-LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVK   95 (186)
Q Consensus        27 ~~l~l~Dt~G~~----~~~~~~~~~~~---~ad~vilv~D~~~~-~s~~~i~~~~~~~~~~~---~~~p~ilv~nK~Dl~   95 (186)
                      ..+.||||||+.    .+..+...+++   .+|++++|+|++++ .+++.+..|.+.+....   .+.|+++|+||+|+.
T Consensus        48 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~  127 (170)
T cd01898          48 RSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLL  127 (170)
T ss_pred             CeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcC
Confidence            588999999974    22334444444   59999999999999 78999999998887764   368999999999997


Q ss_pred             CcccChH-HHHHHHH-cCCcEEEeccCCCCCchHHHHHHHHH
Q 029854           96 NRQVKAK-QVTFHRK-KNLQYYEISAKSNYNFEKPFLYLARK  135 (186)
Q Consensus        96 ~~~~~~~-~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l~~~  135 (186)
                      +.....+ ...+... .+.+++++||++|.|++++|+++.+.
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~  169 (170)
T cd01898         128 DEEELFELLKELLKELWGKPVFPISALTGEGLDELLRKLAEL  169 (170)
T ss_pred             CchhhHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence            5443333 3344444 36789999999999999999999865

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.71  E-value=4.4e-17  Score=122.01  Aligned_cols=118  Identities=12%  Similarity=0.135  Sum_probs=87.2

Q ss_pred             cccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEE
Q 029854            8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVL   87 (186)
Q Consensus         8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~il   87 (186)
                      .+|.|.++......++...+.+++|||||+++|..++..+++++|++++|||+++.. +.....|+..+..  .+.|+++
T Consensus        46 e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~--~~~p~ii  122 (194)
T cd01891          46 ERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE--LGLKPIV  122 (194)
T ss_pred             HHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH--cCCCEEE
Confidence            456788887777777778899999999999999999999999999999999998742 2333344444433  3789999


Q ss_pred             EEeCCCCCCcccC---hHHHHHHHH-------cCCcEEEeccCCCCCchHH
Q 029854           88 CGNKVDVKNRQVK---AKQVTFHRK-------KNLQYYEISAKSNYNFEKP  128 (186)
Q Consensus        88 v~nK~Dl~~~~~~---~~~~~~~~~-------~~~~~~~~Sa~~~~gi~~l  128 (186)
                      |+||+|+.+....   .+...+...       .+++++++||++|.|+.+.
T Consensus       123 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~  173 (194)
T cd01891         123 VINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNL  173 (194)
T ss_pred             EEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEEEeehhcccccccc
Confidence            9999999643221   222333322       2578999999999887433

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=1.4e-17  Score=119.12  Aligned_cols=130  Identities=21%  Similarity=0.335  Sum_probs=108.5

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCCC
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENI   83 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~~   83 (186)
                      .-.||+|.+...+.+    ....+.+||.+||+..+++|..||..++++|+++|+++++-|+.....++.+...  ..+.
T Consensus        52 ki~~tvgLnig~i~v----~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~  127 (197)
T KOG0076|consen   52 KITPTVGLNIGTIEV----CNAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGA  127 (197)
T ss_pred             Heecccceeecceee----ccceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence            457999999998777    4778999999999999999999999999999999999999999887777666553  2689


Q ss_pred             CEEEEEeCCCCCCcccChHHH---HHHHH---cCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           84 PIVLCGNKVDVKNRQVKAKQV---TFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        84 p~ilv~nK~Dl~~~~~~~~~~---~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      |+++.+||.|+.+.....+..   ..+..   ...++..|||.+|+||++...|+++.+..+
T Consensus       128 p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  128 PVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             chhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence            999999999998765444432   22222   236799999999999999999999998766

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.71  E-value=4.2e-16  Score=109.93  Aligned_cols=128  Identities=34%  Similarity=0.548  Sum_probs=103.4

Q ss_pred             ccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHH--HHHHhhcCC
Q 029854            5 VWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWH--RDLCRVCEN   82 (186)
Q Consensus         5 ~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~--~~~~~~~~~   82 (186)
                      ..+.+|. .++....+........+.+||++|+..+...+..+++.++++++|+|+++..++.....|.  ........+
T Consensus        24 ~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  102 (157)
T cd00882          24 EEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGEN  102 (157)
T ss_pred             cccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCC
Confidence            4566777 8888888887788999999999999998888888999999999999999999988887773  222233468


Q ss_pred             CCEEEEEeCCCCCCcccChH---HHHHHHHcCCcEEEeccCCCCCchHHHHHHH
Q 029854           83 IPIVLCGNKVDVKNRQVKAK---QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  133 (186)
Q Consensus        83 ~p~ilv~nK~Dl~~~~~~~~---~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  133 (186)
                      .|+++++||+|+........   ........+.+++++|++++.|++++++++.
T Consensus       103 ~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882         103 IPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             CcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            99999999999975433332   2234455568999999999999999999876

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.71  E-value=3.8e-16  Score=111.33  Aligned_cols=131  Identities=22%  Similarity=0.348  Sum_probs=106.1

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCCh-hhHHhHH-HHHHHHHhhc
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR-LTYKNVP-TWHRDLCRVC   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~-~s~~~i~-~~~~~~~~~~   80 (186)
                      +...+.||++.++....+..++..+.+.+|||||+..+..++..+.+.+++++.++|.... .++.... .|...+....
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~  105 (161)
T TIGR00231        26 FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHA  105 (161)
T ss_pred             CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhc
Confidence            4567889999999988888888789999999999999999999999999999999999887 6776654 6777776665


Q ss_pred             C-CCCEEEEEeCCCCCCcccChHHH-HHHHHcCCcEEEeccCCCCCchHHHHHHH
Q 029854           81 E-NIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLA  133 (186)
Q Consensus        81 ~-~~p~ilv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  133 (186)
                      . +.|+++++||+|+.......... .+......+++++||++|.|+.++|+++.
T Consensus       106 ~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~  160 (161)
T TIGR00231       106 ESNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE  160 (161)
T ss_pred             ccCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence            4 88999999999997644333333 33333456899999999999999998863

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.70  E-value=3.5e-16  Score=112.58  Aligned_cols=123  Identities=13%  Similarity=0.082  Sum_probs=91.2

Q ss_pred             ccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCc------cccccc--cCcEEEEEEeCCChhhHHhHHHHHHHHHh
Q 029854            7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL------RDGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCR   78 (186)
Q Consensus         7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~------~~~~~~--~ad~vilv~D~~~~~s~~~i~~~~~~~~~   78 (186)
                      +.|++..++....+.+++  ..+.+|||||+..+..+      +..++.  ++|++|+|+|+++..+..   .|...+..
T Consensus        25 ~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~---~~~~~~~~   99 (158)
T cd01879          25 NWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNL---YLTLQLLE   99 (158)
T ss_pred             CCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhHH---HHHHHHHH
Confidence            345556666666666665  47889999999887653      455664  999999999999865432   34444443


Q ss_pred             hcCCCCEEEEEeCCCCCCcc-cChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029854           79 VCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        79 ~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                        .+.|+++|+||+|+.+.. .......++..++.+++++||++|.|+.+++..+.+.+
T Consensus       100 --~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~~  156 (158)
T cd01879         100 --LGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDAIAELA  156 (158)
T ss_pred             --cCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHHHHh
Confidence              378999999999997542 33334466677788999999999999999999998763

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.70  E-value=3.8e-17  Score=116.12  Aligned_cols=109  Identities=18%  Similarity=0.170  Sum_probs=80.6

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCcc-----ccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQE-----KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC   80 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~-----~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~   80 (186)
                      .|.+|+++++..            .+|||||+.     .|..+.. .+++||++|+|||++++.++.. ..|....    
T Consensus        26 ~~~~t~~~~~~~------------~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~~-~~~~~~~----   87 (142)
T TIGR02528        26 LYKKTQAVEYND------------GAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATDPESRFP-PGFASIF----   87 (142)
T ss_pred             ccccceeEEEcC------------eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCCC-hhHHHhc----
Confidence            467787766542            579999972     3343333 4789999999999999998865 3454432    


Q ss_pred             CCCCEEEEEeCCCCCCcccChH-HHHHHHHcCC-cEEEeccCCCCCchHHHHHHH
Q 029854           81 ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNL-QYYEISAKSNYNFEKPFLYLA  133 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~  133 (186)
                       ..|+++|+||+|+.++....+ ..++++..+. +++++||++|.|++++|.++.
T Consensus        88 -~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  141 (142)
T TIGR02528        88 -VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDYLN  141 (142)
T ss_pred             -cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence             249999999999975433333 3466666665 799999999999999999874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PRK15494 era GTPase Era; Provisional

Probab=99.68  E-value=7.8e-16  Score=124.55  Aligned_cols=152  Identities=16%  Similarity=0.142  Sum_probs=105.6

Q ss_pred             ccccceEEEEEEEEEECCeEEEEEEEeCCCcc-ccCCcc-------ccccccCcEEEEEEeCCChhhHHhHH-HHHHHHH
Q 029854            7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQE-KFGGLR-------DGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLC   77 (186)
Q Consensus         7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~-~~~~~~-------~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~   77 (186)
                      ..+|.+  +....+..++  .++.||||||+. .+..+.       ...+++||++|+|+|.++  +|.... .|++.+.
T Consensus        84 ~~tTr~--~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~  157 (339)
T PRK15494         84 VQTTRS--IITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK--SFDDITHNILDKLR  157 (339)
T ss_pred             CCCccC--cEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHH
Confidence            344543  2333344444  467999999984 333322       234779999999999876  455543 4555554


Q ss_pred             hhcCCCCEEEEEeCCCCCCcccChHHHHHHHHcC--CcEEEeccCCCCCchHHHHHHHHHHhCCCCcccccCCCCCCCcc
Q 029854           78 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEV  155 (186)
Q Consensus        78 ~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~  155 (186)
                      ..  +.|.++|+||+|+.+.. ..+..+++...+  ..++++||++|.|++++|+++...+.+.+...........+.++
T Consensus       158 ~~--~~p~IlViNKiDl~~~~-~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~  234 (339)
T PRK15494        158 SL--NIVPIFLLNKIDIESKY-LNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKISPWLYAEDDITDLPMRF  234 (339)
T ss_pred             hc--CCCEEEEEEhhcCcccc-HHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHH
Confidence            43  56888999999996532 223334444443  57999999999999999999999999998888888887778787


Q ss_pred             ccCHHHHHHHHH
Q 029854          156 QIDLAAQQQHEA  167 (186)
Q Consensus       156 ~~~~~~~~~~~~  167 (186)
                      ...+..+++.=.
T Consensus       235 ~~~eiiRe~~~~  246 (339)
T PRK15494        235 IAAEITREQLFL  246 (339)
T ss_pred             HHHHHHHHHHHh
Confidence            777777766533

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=2.3e-16  Score=109.70  Aligned_cols=130  Identities=19%  Similarity=0.284  Sum_probs=100.5

Q ss_pred             ccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCC
Q 029854            5 VWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CEN   82 (186)
Q Consensus         5 ~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~   82 (186)
                      ....||+|++.....+    ++..+++||.+|+-..+..|+-||.+.+++|+|+|.+|++.......-+-.+.+.  ..+
T Consensus        44 vttkPtigfnve~v~y----KNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~  119 (182)
T KOG0072|consen   44 VTTKPTIGFNVETVPY----KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQH  119 (182)
T ss_pred             cccCCCCCcCcccccc----ccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcC
Confidence            3468999999886665    8899999999999999999999999999999999999987544333322222222  245


Q ss_pred             CCEEEEEeCCCCCCcccChHHHH-----HHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           83 IPIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        83 ~p~ilv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      ..+++++||.|.+.+....+...     ..+..-+.++++||.+|.|++.+++||.+.+.+
T Consensus       120 a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~  180 (182)
T KOG0072|consen  120 AKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRPLKS  180 (182)
T ss_pred             ceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHHHHHHHHHhc
Confidence            78999999999987655444321     112223679999999999999999999988754

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.66  E-value=2.3e-15  Score=105.78  Aligned_cols=137  Identities=19%  Similarity=0.326  Sum_probs=110.3

Q ss_pred             CCccccccceEEEEEEEEEE-CCeEEEEEEEeCCCcccc-CCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc
Q 029854            3 VSVWGKATIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKF-GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~-~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~   80 (186)
                      .-+++.|||. |++...+.. .|-+-++.|+||+|...+ ..+-+.|+.-+|++++||+..++.||+.+.-....|.+..
T Consensus        36 ~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~K  114 (198)
T KOG3883|consen   36 PGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHK  114 (198)
T ss_pred             CCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhcc
Confidence            4578999996 555555554 556678999999999888 6788999999999999999999999987644333333332


Q ss_pred             --CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029854           81 --ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus        81 --~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                        ..+|+++.+||+|+.+ +.+..+ +..||+.-.+..++++|.+...+-+.|..++..+.+..
T Consensus       115 dKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf~~l~~rl~~pq  178 (198)
T KOG3883|consen  115 DKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPFTYLASRLHQPQ  178 (198)
T ss_pred             ccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHHHHHHHhccCCc
Confidence              5799999999999975 444444 56899999999999999999999999999998887643

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.66  E-value=1.1e-15  Score=123.27  Aligned_cols=113  Identities=18%  Similarity=0.137  Sum_probs=87.0

Q ss_pred             EEEEEEeCCCcccc----CCcccc---ccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc---CCCCEEEEEeCCCCCC
Q 029854           27 IRFYCWDTAGQEKF----GGLRDG---YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKN   96 (186)
Q Consensus        27 ~~l~l~Dt~G~~~~----~~~~~~---~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~---~~~p~ilv~nK~Dl~~   96 (186)
                      ..+.+|||||...-    ..+...   .++.++++|+|+|+++.++++.+..|..++..+.   .+.|+++|+||+|+.+
T Consensus       206 ~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~  285 (335)
T PRK12299        206 KSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD  285 (335)
T ss_pred             cEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC
Confidence            46889999997431    123333   3457999999999998888999999999988764   3689999999999975


Q ss_pred             cc-cChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           97 RQ-VKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        97 ~~-~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      .. ...+ ...++...+.+++++||+++.||+++++++.+.+.+.
T Consensus       286 ~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~~~  330 (335)
T PRK12299        286 EEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWELLEEA  330 (335)
T ss_pred             chhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHHhh
Confidence            33 2222 2234455668899999999999999999999888654

>cd01878 HflX HflX subfamily

Probab=99.65  E-value=1.1e-15  Score=115.16  Aligned_cols=123  Identities=17%  Similarity=0.087  Sum_probs=86.9

Q ss_pred             ccccceEEEEEEEEEECCeEEEEEEEeCCCcccc---------CCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHH
Q 029854            7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF---------GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC   77 (186)
Q Consensus         7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~---------~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~   77 (186)
                      +.+|+......  +.+.+. ..+.+|||||....         ...+ ..+.++|++++|+|++++.++..+..|.+.+.
T Consensus        72 ~~~t~~~~~~~--~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~  147 (204)
T cd01878          72 LFATLDPTTRR--LRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIETVEKVLK  147 (204)
T ss_pred             cceeccceeEE--EEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHH
Confidence            45565544333  333332 37889999997332         1111 13568999999999999888887777777766


Q ss_pred             hhc-CCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029854           78 RVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        78 ~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      ... .+.|+++|+||+|+.+.....   .+....+.+++++||++|.|+++++.+|...+
T Consensus       148 ~~~~~~~~viiV~NK~Dl~~~~~~~---~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~~  204 (204)
T cd01878         148 ELGAEDIPMILVLNKIDLLDDEELE---ERLEAGRPDAVFISAKTGEGLDELLEAIEELL  204 (204)
T ss_pred             HcCcCCCCEEEEEEccccCChHHHH---HHhhcCCCceEEEEcCCCCCHHHHHHHHHhhC
Confidence            543 468999999999996533211   33444567899999999999999999998754

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.64  E-value=9.5e-16  Score=132.02  Aligned_cols=113  Identities=13%  Similarity=0.142  Sum_probs=88.4

Q ss_pred             CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChH
Q 029854           23 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK  102 (186)
Q Consensus        23 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~  102 (186)
                      ++..+.+.||||||+..|...+..+++.+|++|+|+|+++....+....|.....   .+.|+++|+||+|+.+......
T Consensus        70 dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~---~~lpiIvViNKiDl~~a~~~~v  146 (600)
T PRK05433         70 DGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE---NDLEIIPVLNKIDLPAADPERV  146 (600)
T ss_pred             CCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEEEECCCCCcccHHHH
Confidence            5668999999999999999889999999999999999998766665555544322   3789999999999865332221


Q ss_pred             HHHHHHHcCCc---EEEeccCCCCCchHHHHHHHHHHhC
Q 029854          103 QVTFHRKKNLQ---YYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus       103 ~~~~~~~~~~~---~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      ..++...+++.   ++.+||++|.|+.++++++.+.+..
T Consensus       147 ~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~  185 (600)
T PRK05433        147 KQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPP  185 (600)
T ss_pred             HHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence            22444445553   8999999999999999999987753

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.64  E-value=2.1e-15  Score=109.22  Aligned_cols=123  Identities=19%  Similarity=0.179  Sum_probs=101.0

Q ss_pred             cccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEE
Q 029854            8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVL   87 (186)
Q Consensus         8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~il   87 (186)
                      ..|++.||.+.++.   ....++|+|||||++|..+|+.+.+++.+.|+++|.+.+..+ .....+..+.... ..|++|
T Consensus        52 ~tTva~D~g~~~~~---~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~-~ip~vV  126 (187)
T COG2229          52 PTTVAMDFGSIELD---EDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN-PIPVVV  126 (187)
T ss_pred             ceeEeecccceEEc---CcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc-CCCEEE
Confidence            47899999987764   446778899999999999999999999999999999999888 3334444444432 299999


Q ss_pred             EEeCCCCCCcccChHHHHHHHHc--CCcEEEeccCCCCCchHHHHHHHHH
Q 029854           88 CGNKVDVKNRQVKAKQVTFHRKK--NLQYYEISAKSNYNFEKPFLYLARK  135 (186)
Q Consensus        88 v~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~  135 (186)
                      ++||.||.+....++..++....  ..+.++++|..+.|..+.+..+...
T Consensus       127 a~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         127 AINKQDLFDALPPEKIREALKLELLSVPVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             EeeccccCCCCCHHHHHHHHHhccCCCceeeeecccchhHHHHHHHHHhh
Confidence            99999999887777766555433  7899999999999999999888866

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.62  E-value=6.5e-15  Score=107.07  Aligned_cols=110  Identities=16%  Similarity=0.132  Sum_probs=78.5

Q ss_pred             eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccCh---
Q 029854           25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---  101 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~---  101 (186)
                      ....+.+|||||+..|..++..++..+|++++|+|+++....+.. ..+..+..  .+.|+++|+||+|+.......   
T Consensus        48 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~-~~~~~~~~--~~~p~ivv~NK~Dl~~~~~~~~~~  124 (168)
T cd01887          48 KIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTI-EAIKLAKA--ANVPFIVALNKIDKPNANPERVKN  124 (168)
T ss_pred             CcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHH-HHHHHHHH--cCCCEEEEEEceecccccHHHHHH
Confidence            467889999999999998888899999999999999984322211 11222222  478999999999987432111   


Q ss_pred             HHHHHHH------HcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854          102 KQVTFHR------KKNLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus       102 ~~~~~~~------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                      ....+..      ...++++++||++|.|+.++++++.+...
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  166 (168)
T cd01887         125 ELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLAE  166 (168)
T ss_pred             HHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhhh
Confidence            1111111      11357999999999999999999987654

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd01889 SelB_euk SelB subfamily

Probab=99.62  E-value=3.1e-15  Score=111.81  Aligned_cols=127  Identities=13%  Similarity=0.058  Sum_probs=84.6

Q ss_pred             cccceEEEEEEEEE----------ECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHH
Q 029854            8 KATIGVEVHPLDFF----------TNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC   77 (186)
Q Consensus         8 ~~Tig~~~~~~~~~----------~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~   77 (186)
                      .+|++..+....+.          ..+..+.+.+|||||+..+........+.+|++++|+|+++.........|.  +.
T Consensus        39 g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~  116 (192)
T cd01889          39 GITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IG  116 (192)
T ss_pred             CCeeeecceEEEecccccccccccccccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HH
Confidence            36777777666654          1244789999999998665333333456789999999999854444332222  11


Q ss_pred             hhcCCCCEEEEEeCCCCCCcccC----hHHHH-HHH------HcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854           78 RVCENIPIVLCGNKVDVKNRQVK----AKQVT-FHR------KKNLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus        78 ~~~~~~p~ilv~nK~Dl~~~~~~----~~~~~-~~~------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                      .. .+.|+++++||+|+......    .+..+ +..      ..+++++.+||++|.|++++++++..++.
T Consensus       117 ~~-~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         117 EI-LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             HH-cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence            21 26799999999998642211    11111 111      13578999999999999999999998774

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>TIGR00436 era GTP-binding protein Era

Probab=99.62  E-value=4.8e-15  Score=116.51  Aligned_cols=135  Identities=15%  Similarity=0.035  Sum_probs=96.0

Q ss_pred             EEEEEEeCCCccccC-C-------ccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcc
Q 029854           27 IRFYCWDTAGQEKFG-G-------LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ   98 (186)
Q Consensus        27 ~~l~l~Dt~G~~~~~-~-------~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~   98 (186)
                      .++.||||||..... .       ....++++||++++|+|+++..+.+  ..++..+..  .+.|+++|+||+|+.+..
T Consensus        48 ~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~--~~~p~ilV~NK~Dl~~~~  123 (270)
T TIGR00436        48 SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQN--LKRPVVLTRNKLDNKFKD  123 (270)
T ss_pred             cEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH--HHHHHHHHh--cCCCEEEEEECeeCCCHH
Confidence            578999999975431 1       1345678999999999999876664  334444443  368999999999996432


Q ss_pred             cCh-HHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhCCCCcccccCCCCCCCccccCHHHHHHH
Q 029854           99 VKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQH  165 (186)
Q Consensus        99 ~~~-~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (186)
                      ... ....++...+. +++++||++|.|++++++.+.+.+...+...........+..+...+..+++.
T Consensus       124 ~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ire~~  192 (270)
T TIGR00436       124 KLLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLPEGPFRYPEDYVTDQPDRFKISEIIREKI  192 (270)
T ss_pred             HHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCCCHHHHHHHHHHHHH
Confidence            211 22244444444 79999999999999999999999988776666666666666666666666554

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.61  E-value=3.7e-15  Score=109.07  Aligned_cols=110  Identities=14%  Similarity=0.124  Sum_probs=80.6

Q ss_pred             EEEEEEEeCCCccc----cCCcc---ccccccCcEEEEEEeCCCh------hhHHhHHHHHHHHHhhc--------CCCC
Q 029854           26 KIRFYCWDTAGQEK----FGGLR---DGYYIHGQCAIIMFDVTAR------LTYKNVPTWHRDLCRVC--------ENIP   84 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~----~~~~~---~~~~~~ad~vilv~D~~~~------~s~~~i~~~~~~~~~~~--------~~~p   84 (186)
                      ...+.+|||||...    ...++   ..++++++++++|+|+++.      .++.....|...+....        .+.|
T Consensus        43 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  122 (176)
T cd01881          43 GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKP  122 (176)
T ss_pred             CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCC
Confidence            45678999999743    22232   2346789999999999988      57777777777776542        3689


Q ss_pred             EEEEEeCCCCCCcccChHH--HHHHHHcCCcEEEeccCCCCCchHHHHHHHHH
Q 029854           85 IVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  135 (186)
Q Consensus        85 ~ilv~nK~Dl~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  135 (186)
                      +++|+||+|+.........  .......+.+++.+||++|.|++++++++...
T Consensus       123 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         123 VIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             eEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence            9999999999753322221  23333445789999999999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.61  E-value=9.3e-15  Score=117.67  Aligned_cols=111  Identities=16%  Similarity=0.205  Sum_probs=84.8

Q ss_pred             EEEEEEEeCCCcccc----CCccccccc---cCcEEEEEEeCCCh---hhHHhHHHHHHHHHhhc---CCCCEEEEEeCC
Q 029854           26 KIRFYCWDTAGQEKF----GGLRDGYYI---HGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVC---ENIPIVLCGNKV   92 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~----~~~~~~~~~---~ad~vilv~D~~~~---~s~~~i~~~~~~~~~~~---~~~p~ilv~nK~   92 (186)
                      ...++||||||+...    ..+...+++   .++++|+|+|+++.   ++++++..|.+++..+.   .+.|++||+||+
T Consensus       204 ~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~  283 (329)
T TIGR02729       204 GRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKI  283 (329)
T ss_pred             ceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCc
Confidence            367899999997532    234444544   69999999999986   67888888888777653   478999999999


Q ss_pred             CCCCcccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029854           93 DVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        93 Dl~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      |+.+.....+ ...++..++.+++++||+++.|+++++.++.+.+
T Consensus       284 DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       284 DLLDEEELAELLKELKKALGKPVFPISALTGEGLDELLYALAELL  328 (329)
T ss_pred             cCCChHHHHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence            9975432222 2345556678899999999999999999998765

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.60  E-value=1.7e-14  Score=120.25  Aligned_cols=121  Identities=23%  Similarity=0.187  Sum_probs=93.5

Q ss_pred             cccceEEEEEEEEEECCeEEEEEEEeCCCccccCCc--------cccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh
Q 029854            8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV   79 (186)
Q Consensus         8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~--------~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~   79 (186)
                      .|+...++....+.+++..  +.+|||||+..+...        ...++++||++++|||++++.+++..  |+..+.. 
T Consensus       234 ~pgtTrd~~~~~i~~~g~~--v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~-  308 (442)
T TIGR00450       234 IKGTTRDVVEGDFELNGIL--IKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK-  308 (442)
T ss_pred             CCCcEEEEEEEEEEECCEE--EEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh-
Confidence            3555678888888887654  579999998765432        24578899999999999998887764  7666543 


Q ss_pred             cCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           80 CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        80 ~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                       .+.|+++|+||+|+...    +...+++.++.+++.+||++ .||+++|+.+.+.+.+.
T Consensus       309 -~~~piIlV~NK~Dl~~~----~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i~~~  362 (442)
T TIGR00450       309 -SKKPFILVLNKIDLKIN----SLEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQKINAF  362 (442)
T ss_pred             -CCCCEEEEEECccCCCc----chhhhhhhcCCceEEEEEec-CCHHHHHHHHHHHHHHH
Confidence             37899999999999643    22344566678899999998 69999999999988754

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd01894 EngA1 EngA1 subfamily

Probab=99.60  E-value=1.8e-14  Score=103.36  Aligned_cols=116  Identities=16%  Similarity=0.056  Sum_probs=80.0

Q ss_pred             EEEEEEEEEECCeEEEEEEEeCCCccccCC--------ccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC
Q 029854           13 VEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP   84 (186)
Q Consensus        13 ~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~--------~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p   84 (186)
                      .+........++  ..+.+|||||...+..        .+...++++|++++|+|+++..+.... .+.+.+..  .+.|
T Consensus        33 ~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~--~~~p  107 (157)
T cd01894          33 RDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADE-EIAKYLRK--SKKP  107 (157)
T ss_pred             eCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHH-HHHHHHHh--cCCC
Confidence            334434444433  6788999999987654        334567889999999999876544332 22222222  2599


Q ss_pred             EEEEEeCCCCCCcccChHHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHH
Q 029854           85 IVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        85 ~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      +++|+||+|+.+....   .......+. +++++||++|.|++++|+++++++
T Consensus       108 iiiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~  157 (157)
T cd01894         108 VILVVNKVDNIKEEDE---AAEFYSLGFGEPIPISAEHGRGIGDLLDAILELL  157 (157)
T ss_pred             EEEEEECcccCChHHH---HHHHHhcCCCCeEEEecccCCCHHHHHHHHHhhC
Confidence            9999999999764322   222334455 789999999999999999998753

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK04213 GTP-binding protein; Provisional

Probab=99.59  E-value=3.1e-15  Score=112.42  Aligned_cols=106  Identities=22%  Similarity=0.203  Sum_probs=72.5

Q ss_pred             EEEEEeCCC-----------ccccCCccccccc----cCcEEEEEEeCCChhhHHhHHHH------------HHHHHhhc
Q 029854           28 RFYCWDTAG-----------QEKFGGLRDGYYI----HGQCAIIMFDVTARLTYKNVPTW------------HRDLCRVC   80 (186)
Q Consensus        28 ~l~l~Dt~G-----------~~~~~~~~~~~~~----~ad~vilv~D~~~~~s~~~i~~~------------~~~~~~~~   80 (186)
                      .+.+|||||           +++++.++..++.    .++++++|+|.++...+.  ..|            +..+..  
T Consensus        53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~--  128 (201)
T PRK04213         53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEII--ERWEGRGEIPIDVEMFDFLRE--  128 (201)
T ss_pred             ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccc--cccccCCCcHHHHHHHHHHHH--
Confidence            589999999           5666666666654    357888888886532210  122            222222  


Q ss_pred             CCCCEEEEEeCCCCCCcccChHHHHHHHHcCC---------cEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           81 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---------QYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      .+.|+++|+||+|+.+.. .....+++..++.         +++++||++| ||+++|++|++.+...
T Consensus       129 ~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~  194 (201)
T PRK04213        129 LGIPPIVAVNKMDKIKNR-DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA  194 (201)
T ss_pred             cCCCeEEEEECccccCcH-HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence            479999999999996543 1223345555554         4899999999 9999999999987654

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.59  E-value=1.8e-14  Score=123.85  Aligned_cols=129  Identities=18%  Similarity=0.057  Sum_probs=95.2

Q ss_pred             CccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCC---hhhHHhHHHHHHHHHhhc
Q 029854            4 SVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA---RLTYKNVPTWHRDLCRVC   80 (186)
Q Consensus         4 ~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~---~~s~~~i~~~~~~~~~~~   80 (186)
                      +.++.+++.+++....+..++  ..+.||||||+++|.......+.++|++++|+|+++   +.+++.+.    .+..  
T Consensus        29 ~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~----il~~--  100 (581)
T TIGR00475        29 PEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLA----VLDL--  100 (581)
T ss_pred             hhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHH----HHHH--
Confidence            345667777777766666655  788999999999998888888999999999999998   44444332    2222  


Q ss_pred             CCCC-EEEEEeCCCCCCccc----ChHHHHHHHHc----CCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029854           81 ENIP-IVLCGNKVDVKNRQV----KAKQVTFHRKK----NLQYYEISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus        81 ~~~p-~ilv~nK~Dl~~~~~----~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                      .+.| +++|+||+|+.+...    ..+...+....    +++++++||++|.|+++++..+...+....
T Consensus       101 lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~~  169 (581)
T TIGR00475       101 LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLESLD  169 (581)
T ss_pred             cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhCC
Confidence            2577 999999999975331    12223444443    478999999999999999999987775543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.59  E-value=7.3e-15  Score=123.82  Aligned_cols=128  Identities=17%  Similarity=0.101  Sum_probs=90.1

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccc----------cCCcc-ccccccCcEEEEEEeCCChhhHHhHHHHHH
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------FGGLR-DGYYIHGQCAIIMFDVTARLTYKNVPTWHR   74 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~~-~~~~~~ad~vilv~D~~~~~s~~~i~~~~~   74 (186)
                      ...|+++.+.....+.+++..+  .||||||..+          |..++ ..++++||++|+|+|+++..+++++. ++.
T Consensus       240 s~~~gtT~d~~~~~~~~~~~~~--~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~  316 (472)
T PRK03003        240 DDVAGTTVDPVDSLIELGGKTW--RFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLS  316 (472)
T ss_pred             cCCCCccCCcceEEEEECCEEE--EEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHH
Confidence            3456666777777777777654  6899999643          22222 23578999999999999988887763 444


Q ss_pred             HHHhhcCCCCEEEEEeCCCCCCcccChH----HH-HHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           75 DLCRVCENIPIVLCGNKVDVKNRQVKAK----QV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        75 ~~~~~~~~~p~ilv~nK~Dl~~~~~~~~----~~-~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      .+..  .+.|+++|+||+|+.+......    .. .+......+++++||++|.||+++|..+.+.+..
T Consensus       317 ~~~~--~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~  383 (472)
T PRK03003        317 MVIE--AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALES  383 (472)
T ss_pred             HHHH--cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4443  4789999999999974221111    11 1122223689999999999999999999987753

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.57  E-value=2.9e-14  Score=120.20  Aligned_cols=124  Identities=20%  Similarity=0.168  Sum_probs=86.2

Q ss_pred             ccccceEEEEEEEEEECCeEEEEEEEeCCCccc--------cCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHh
Q 029854            7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--------FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR   78 (186)
Q Consensus         7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~--------~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~   78 (186)
                      ..|++..+.......+++.  .+.+|||||++.        +...+..+++.||++|+|||+++..++.. ..|...+..
T Consensus        68 ~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~  144 (472)
T PRK03003         68 DVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATD-EAVARVLRR  144 (472)
T ss_pred             CCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH
Confidence            4455555666556655555  477899999763        23345567889999999999998766543 234444443


Q ss_pred             hcCCCCEEEEEeCCCCCCcccChHHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           79 VCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        79 ~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                        .+.|+++|+||+|+....  .+...+. ..++ ..+++||++|.|+.++|++++..+..
T Consensus       145 --~~~piilV~NK~Dl~~~~--~~~~~~~-~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~  200 (472)
T PRK03003        145 --SGKPVILAANKVDDERGE--ADAAALW-SLGLGEPHPVSALHGRGVGDLLDAVLAALPE  200 (472)
T ss_pred             --cCCCEEEEEECccCCccc--hhhHHHH-hcCCCCeEEEEcCCCCCcHHHHHHHHhhccc
Confidence              479999999999986432  1222221 2233 35799999999999999999998865

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.57  E-value=1.1e-14  Score=109.84  Aligned_cols=107  Identities=17%  Similarity=0.173  Sum_probs=76.8

Q ss_pred             EEEEEEeCCCccccCCccccccccCcEEEEEEeCCCh----hhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccC--
Q 029854           27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR----LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK--  100 (186)
Q Consensus        27 ~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~----~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--  100 (186)
                      .++.||||||++.|...+...++.+|++++|+|++++    .+++.+..|    .. ....|+++|+||+|+.+....  
T Consensus        83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~----~~-~~~~~iiivvNK~Dl~~~~~~~~  157 (203)
T cd01888          83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL----EI-MGLKHIIIVQNKIDLVKEEQALE  157 (203)
T ss_pred             cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH----HH-cCCCcEEEEEEchhccCHHHHHH
Confidence            6889999999998877777778889999999999973    233322222    11 123579999999999752211  


Q ss_pred             --hHHHHHHHHc---CCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854          101 --AKQVTFHRKK---NLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus       101 --~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                        ....++...+   +.+++.+||++|.|++++|+.+.+.+..
T Consensus       158 ~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~  200 (203)
T cd01888         158 NYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT  200 (203)
T ss_pred             HHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence              1122333322   5689999999999999999999987654

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.57  E-value=3.3e-14  Score=118.98  Aligned_cols=117  Identities=15%  Similarity=0.107  Sum_probs=87.7

Q ss_pred             ccceEEEEEEEEEECCeEEEEEEEeCCCccccCCc--------cccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc
Q 029854            9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC   80 (186)
Q Consensus         9 ~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~--------~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~   80 (186)
                      |....++....+.+++.  .+.+|||||.+.+...        ...++++||++++|+|++++.+++....|..     .
T Consensus       247 ~gtT~d~~~~~i~~~g~--~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~-----~  319 (449)
T PRK05291        247 AGTTRDVIEEHINLDGI--PLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE-----L  319 (449)
T ss_pred             CCcccccEEEEEEECCe--EEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh-----c
Confidence            33345666666766654  5789999998765432        2346889999999999999888776544443     3


Q ss_pred             CCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           81 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      .+.|+++|+||+|+.+.....      ...+.+++++||++|.|++++++++.+.+..
T Consensus       320 ~~~piiiV~NK~DL~~~~~~~------~~~~~~~i~iSAktg~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        320 KDKPVIVVLNKADLTGEIDLE------EENGKPVIRISAKTGEGIDELREAIKELAFG  371 (449)
T ss_pred             CCCCcEEEEEhhhccccchhh------hccCCceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence            578999999999996432111      3345689999999999999999999998864

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.57  E-value=2.9e-14  Score=115.75  Aligned_cols=120  Identities=16%  Similarity=0.100  Sum_probs=83.1

Q ss_pred             cccceEEEEEEEEEECCeEEEEEEEeCCCccc---------cCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHh
Q 029854            8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEK---------FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR   78 (186)
Q Consensus         8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~---------~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~   78 (186)
                      -+|..  .....+.+.+ ...+.||||+|..+         |...+ ..+.+||++|+|+|++++.+++.+..|...+..
T Consensus       221 ~tT~d--~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~  296 (351)
T TIGR03156       221 FATLD--PTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATL-EEVREADLLLHVVDASDPDREEQIEAVEKVLEE  296 (351)
T ss_pred             ccccC--CEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHH-HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHH
Confidence            35543  3444555532 24788999999722         22211 247899999999999999888877767666555


Q ss_pred             hc-CCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHH
Q 029854           79 VC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  135 (186)
Q Consensus        79 ~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  135 (186)
                      .. .+.|+++|+||+|+.+..   ....+ .....+++.+||++|.|+++++..+.+.
T Consensus       297 l~~~~~piIlV~NK~Dl~~~~---~v~~~-~~~~~~~i~iSAktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       297 LGAEDIPQLLVYNKIDLLDEP---RIERL-EEGYPEAVFVSAKTGEGLDLLLEAIAER  350 (351)
T ss_pred             hccCCCCEEEEEEeecCCChH---hHHHH-HhCCCCEEEEEccCCCCHHHHHHHHHhh
Confidence            43 478999999999986421   11111 1223468999999999999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.56  E-value=5.2e-14  Score=120.84  Aligned_cols=121  Identities=14%  Similarity=0.150  Sum_probs=82.5

Q ss_pred             ccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEE
Q 029854            9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLC   88 (186)
Q Consensus         9 ~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv   88 (186)
                      +++..++....+.+++.. .+.||||||++.|..++...++.+|++|+|+|+++...-+.... +.....  .+.|++++
T Consensus       118 ~GIT~~ig~~~v~~~~~~-~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~-i~~~~~--~~vPiIVv  193 (587)
T TIGR00487       118 GGITQHIGAYHVENEDGK-MITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEA-ISHAKA--ANVPIIVA  193 (587)
T ss_pred             CceeecceEEEEEECCCc-EEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHH-HHHHHH--cCCCEEEE
Confidence            334444444455554332 78899999999999999999999999999999987432221111 112211  47899999


Q ss_pred             EeCCCCCCcccChHHHHHHHH-------cC--CcEEEeccCCCCCchHHHHHHHH
Q 029854           89 GNKVDVKNRQVKAKQVTFHRK-------KN--LQYYEISAKSNYNFEKPFLYLAR  134 (186)
Q Consensus        89 ~nK~Dl~~~~~~~~~~~~~~~-------~~--~~~~~~Sa~~~~gi~~l~~~l~~  134 (186)
                      +||+|+.+... ......+..       ++  .+++++||++|.|++++|+++..
T Consensus       194 iNKiDl~~~~~-e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~  247 (587)
T TIGR00487       194 INKIDKPEANP-DRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL  247 (587)
T ss_pred             EECcccccCCH-HHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence            99999965321 122222222       22  47999999999999999999874

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.56  E-value=2.3e-14  Score=125.06  Aligned_cols=124  Identities=19%  Similarity=0.205  Sum_probs=86.8

Q ss_pred             cceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEE
Q 029854           10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG   89 (186)
Q Consensus        10 Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~   89 (186)
                      |+.+..+...+..++....+.||||||++.|..++..+++.+|++|+|+|+++....+....| ..+..  .+.|+|+++
T Consensus       278 Tq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I-~~~k~--~~iPiIVVi  354 (742)
T CHL00189        278 TQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAI-NYIQA--ANVPIIVAI  354 (742)
T ss_pred             ccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHH-HHHHh--cCceEEEEE
Confidence            433344444555556678999999999999999999999999999999999874322222111 12222  478999999


Q ss_pred             eCCCCCCcccChHHHHH------HHHcC--CcEEEeccCCCCCchHHHHHHHHHH
Q 029854           90 NKVDVKNRQVKAKQVTF------HRKKN--LQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        90 nK~Dl~~~~~~~~~~~~------~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      ||+|+.+.....-...+      ...++  ++++++||++|.|+.++|..+....
T Consensus       355 NKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        355 NKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLA  409 (742)
T ss_pred             ECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence            99999753221111111      12223  6899999999999999999988654

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.55  E-value=1.3e-14  Score=100.82  Aligned_cols=128  Identities=17%  Similarity=0.228  Sum_probs=98.3

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHh-hc-CCC
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VC-ENI   83 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~-~~-~~~   83 (186)
                      .-.||-|++.......   ..+++.+||.+|+...+..|..||.+.|++|+|+|++++.-|+++..-+-++.. .. ..+
T Consensus        44 hltpT~GFn~k~v~~~---g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~v  120 (185)
T KOG0074|consen   44 HLTPTNGFNTKKVEYD---GTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEV  120 (185)
T ss_pred             hccccCCcceEEEeec---CcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhcc
Confidence            4579999888877765   679999999999999999999999999999999999999889987644444433 32 579


Q ss_pred             CEEEEEeCCCCCCcccChH-HH----HHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029854           84 PIVLCGNKVDVKNRQVKAK-QV----TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        84 p~ilv~nK~Dl~~~~~~~~-~~----~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      |+++.+||.|+.-....++ ..    ...+.....+.+|||.+++|+.+-..++....
T Consensus       121 pvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~wv~sn~  178 (185)
T KOG0074|consen  121 PVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDWVQSNP  178 (185)
T ss_pred             ceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcchhhhcCC
Confidence            9999999999864322222 11    11122235688999999999999988877543

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.55  E-value=8.9e-14  Score=99.60  Aligned_cols=117  Identities=16%  Similarity=0.065  Sum_probs=84.7

Q ss_pred             cccceEEEEEEEEEECCeEEEEEEEeCCCccccCCc--------cccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh
Q 029854            8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV   79 (186)
Q Consensus         8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~--------~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~   79 (186)
                      .|++..++....+..+  ...+.+|||||...+...        ....+..+|++++|+|++++.+......|..     
T Consensus        32 ~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~-----  104 (157)
T cd04164          32 IAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL-----  104 (157)
T ss_pred             CCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh-----
Confidence            3444455555555544  356789999998665432        2245678999999999998877666544333     


Q ss_pred             cCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029854           80 CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        80 ~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      ..+.|+++|+||+|+.+....     .......+++++||+++.|+++++++|...+
T Consensus       105 ~~~~~vi~v~nK~D~~~~~~~-----~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~  156 (157)
T cd04164         105 PADKPIIVVLNKSDLLPDSEL-----LSLLAGKPIIAISAKTGEGLDELKEALLELA  156 (157)
T ss_pred             hcCCCEEEEEEchhcCCcccc-----ccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence            347999999999999754332     2344467899999999999999999998754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.55  E-value=1.1e-13  Score=114.48  Aligned_cols=114  Identities=17%  Similarity=0.223  Sum_probs=86.2

Q ss_pred             EEEEEEEeCCCccc----cCCccccccc---cCcEEEEEEeCCCh---hhHHhHHHHHHHHHhhc---CCCCEEEEEeCC
Q 029854           26 KIRFYCWDTAGQEK----FGGLRDGYYI---HGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVC---ENIPIVLCGNKV   92 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~----~~~~~~~~~~---~ad~vilv~D~~~~---~s~~~i~~~~~~~~~~~---~~~p~ilv~nK~   92 (186)
                      ...+.||||||...    ...+...+++   .++++|+|+|+++.   +++++...|.+.+..+.   .+.|++||+||+
T Consensus       205 ~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~  284 (424)
T PRK12297        205 GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKM  284 (424)
T ss_pred             CceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCC
Confidence            45788999999743    2234445544   59999999999864   57777778888877764   378999999999


Q ss_pred             CCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCC
Q 029854           93 DVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN  141 (186)
Q Consensus        93 Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  141 (186)
                      |+.+.  ......+++.++.+++.+||+++.|++++++++.+.+...+.
T Consensus       285 DL~~~--~e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~l~~~~~  331 (424)
T PRK12297        285 DLPEA--EENLEEFKEKLGPKVFPISALTGQGLDELLYAVAELLEETPE  331 (424)
T ss_pred             CCcCC--HHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHHHHhCcc
Confidence            98532  122345566666789999999999999999999998876543

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.55  E-value=9.1e-14  Score=119.74  Aligned_cols=124  Identities=13%  Similarity=0.080  Sum_probs=91.2

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCc------ccccc--ccCcEEEEEEeCCChhhHHhHHHHHHHHH
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL------RDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLC   77 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~------~~~~~--~~ad~vilv~D~~~~~s~~~i~~~~~~~~   77 (186)
                      .+.|++.++.....+.+++.  .+++|||||+..+...      .+.++  .++|++++|+|+++.+.   ...+..++.
T Consensus        22 ~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler---~l~l~~ql~   96 (591)
T TIGR00437        22 GNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLER---NLYLTLQLL   96 (591)
T ss_pred             cCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchh---hHHHHHHHH
Confidence            34566667776666666655  4689999999887654      33443  37999999999997432   223333333


Q ss_pred             hhcCCCCEEEEEeCCCCCCc-ccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029854           78 RVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        78 ~~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      +  .+.|+++|+||+|+.++ ....+...+.+..+++++++||++|.|++++++.+.+..
T Consensus        97 ~--~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~~  154 (591)
T TIGR00437        97 E--LGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKAI  154 (591)
T ss_pred             h--cCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            3  37999999999999643 333345577788899999999999999999999998764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.55  E-value=8.6e-15  Score=106.28  Aligned_cols=103  Identities=12%  Similarity=0.013  Sum_probs=75.5

Q ss_pred             EEeCCCccccCCcc----ccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHH
Q 029854           31 CWDTAGQEKFGGLR----DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTF  106 (186)
Q Consensus        31 l~Dt~G~~~~~~~~----~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~  106 (186)
                      +|||||+......+    ...+++||++++|+|+++..++..  .|+..+   ..+.|+++++||+|+.+.. ......+
T Consensus        41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~--~~~~~~---~~~~~ii~v~nK~Dl~~~~-~~~~~~~  114 (158)
T PRK15467         41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESRLP--AGLLDI---GVSKRQIAVISKTDMPDAD-VAATRKL  114 (158)
T ss_pred             cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCcccccC--HHHHhc---cCCCCeEEEEEccccCccc-HHHHHHH
Confidence            69999974322211    223689999999999998877643  454443   2367999999999996532 2234466


Q ss_pred             HHHcCC--cEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854          107 HRKKNL--QYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus       107 ~~~~~~--~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      +.+.++  +++++||++|.|++++|..+.+.+.+.
T Consensus       115 ~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~~  149 (158)
T PRK15467        115 LLETGFEEPIFELNSHDPQSVQQLVDYLASLTKQE  149 (158)
T ss_pred             HHHcCCCCCEEEEECCCccCHHHHHHHHHHhchhh
Confidence            666764  899999999999999999998877543

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.55  E-value=5.3e-14  Score=103.95  Aligned_cols=110  Identities=17%  Similarity=0.112  Sum_probs=82.4

Q ss_pred             eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccCh---
Q 029854           25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---  101 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~---  101 (186)
                      ....+.||||||+..+...+..+++.+|++++|+|+++..+... ..++..+..  .+.|+++++||+|+.......   
T Consensus        60 ~~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~--~~~~i~iv~nK~D~~~~~~~~~~~  136 (189)
T cd00881          60 PDRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE--GGLPIIVAINKIDRVGEEDLEEVL  136 (189)
T ss_pred             CCEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH--CCCCeEEEEECCCCcchhcHHHHH
Confidence            35688999999999988888999999999999999988654432 334444433  479999999999997521111   


Q ss_pred             -HHHHHHHH--------------cCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854          102 -KQVTFHRK--------------KNLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus       102 -~~~~~~~~--------------~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                       ...+..+.              ...+++++||++|.|+++++.++.+.+.
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         137 REIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             HHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence             11222222              2467999999999999999999998863

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.54  E-value=1.5e-13  Score=114.55  Aligned_cols=121  Identities=17%  Similarity=0.172  Sum_probs=83.2

Q ss_pred             EEEEEEEEEECCeEEEEEEEeCCCccccCCcc-----------ccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC
Q 029854           13 VEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR-----------DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE   81 (186)
Q Consensus        13 ~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~-----------~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~   81 (186)
                      .+.....+..++.  .+.+|||||..++....           ..+++.||++|+|+|+++..+.++. .++..+..  .
T Consensus       208 ~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~--~  282 (429)
T TIGR03594       208 RDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDL-RIAGLILE--A  282 (429)
T ss_pred             ECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH--c
Confidence            3444445555554  67899999987665432           2357899999999999988776654 33333333  3


Q ss_pred             CCCEEEEEeCCCCCC-cccChHHH-HHHHH----cCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           82 NIPIVLCGNKVDVKN-RQVKAKQV-TFHRK----KNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~~~~~-~~~~~----~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      +.|+++|+||+|+.+ .....+.. .+...    .+++++++||++|.|++++|+++.+....
T Consensus       283 ~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~  345 (429)
T TIGR03594       283 GKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYEN  345 (429)
T ss_pred             CCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            789999999999972 21111211 22222    24689999999999999999999887643

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.51  E-value=2.1e-13  Score=120.02  Aligned_cols=112  Identities=14%  Similarity=0.171  Sum_probs=79.0

Q ss_pred             EEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh-cCCCCEEEEEeCCCCCC
Q 029854           18 LDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKN   96 (186)
Q Consensus        18 ~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~-~~~~p~ilv~nK~Dl~~   96 (186)
                      ..+.+++  ..+.||||||++.|..++...++.+|++|||||+++...-+.    .+.+... ..+.|+||++||+|+.+
T Consensus       330 ~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT----~e~i~~a~~~~vPiIVviNKiDl~~  403 (787)
T PRK05306        330 YQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQT----IEAINHAKAAGVPIIVAINKIDKPG  403 (787)
T ss_pred             EEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhH----HHHHHHHHhcCCcEEEEEECccccc
Confidence            3444444  578899999999999999999999999999999987422111    1122222 14799999999999975


Q ss_pred             cccC---hHHH---HHHHHcC--CcEEEeccCCCCCchHHHHHHHHH
Q 029854           97 RQVK---AKQV---TFHRKKN--LQYYEISAKSNYNFEKPFLYLARK  135 (186)
Q Consensus        97 ~~~~---~~~~---~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~  135 (186)
                      ....   .+..   .++..++  ++++++||++|.||+++|+++...
T Consensus       404 a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~  450 (787)
T PRK05306        404 ANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQ  450 (787)
T ss_pred             cCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence            3211   1111   1122233  689999999999999999998753

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.51  E-value=1.1e-13  Score=95.36  Aligned_cols=87  Identities=22%  Similarity=0.436  Sum_probs=69.7

Q ss_pred             ccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH---HHHHHHHhhcCCC
Q 029854            7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP---TWHRDLCRVCENI   83 (186)
Q Consensus         7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~---~~~~~~~~~~~~~   83 (186)
                      +.++-+..+......+......+++||++|++.+...+..++.++|++|+|||++++.||+.+.   .|+..+.....+.
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~  109 (119)
T PF08477_consen   30 PEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNI  109 (119)
T ss_dssp             --SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCS
T ss_pred             ccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCC
Confidence            3444455555556666777777999999999999988888899999999999999999998874   4677777666789


Q ss_pred             CEEEEEeCCC
Q 029854           84 PIVLCGNKVD   93 (186)
Q Consensus        84 p~ilv~nK~D   93 (186)
                      |++||+||.|
T Consensus       110 piilv~nK~D  119 (119)
T PF08477_consen  110 PIILVGNKSD  119 (119)
T ss_dssp             EEEEEEE-TC
T ss_pred             CEEEEEeccC
Confidence            9999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.51  E-value=2.6e-13  Score=111.04  Aligned_cols=134  Identities=15%  Similarity=0.146  Sum_probs=104.5

Q ss_pred             CCCccccccceEEEEEEEEEE-CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc
Q 029854            2 NVSVWGKATIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC   80 (186)
Q Consensus         2 ~~~~~~~~Tig~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~   80 (186)
                      |+..+..-||-.+-....+.. +|..+.|+|+||||+-.|.--....+.-|.|+++|+|++..-..+.+.+.+..+.+  
T Consensus        50 diERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~--  127 (603)
T COG0481          50 DIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN--  127 (603)
T ss_pred             hhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc--
Confidence            334445556665555555554 67889999999999999988888888999999999999987666666555555544  


Q ss_pred             CCCCEEEEEeCCCCCCcccChHHHHHHHHcCC---cEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           81 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                       +.-++-|.||+||+...+..-..+...-.|+   ..+.+|||+|.||++++++++..+.-
T Consensus       128 -~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~  187 (603)
T COG0481         128 -NLEIIPVLNKIDLPAADPERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPP  187 (603)
T ss_pred             -CcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCC
Confidence             7889999999999987665555555556665   48999999999999999999998854

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.50  E-value=3.7e-13  Score=110.62  Aligned_cols=140  Identities=18%  Similarity=0.103  Sum_probs=97.2

Q ss_pred             EEEEEEeCCCccccCC----ccc---cccccCcEEEEEEeCC---ChhhHHhHHHHHHHHHhhc---CCCCEEEEEeCCC
Q 029854           27 IRFYCWDTAGQEKFGG----LRD---GYYIHGQCAIIMFDVT---ARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVD   93 (186)
Q Consensus        27 ~~l~l~Dt~G~~~~~~----~~~---~~~~~ad~vilv~D~~---~~~s~~~i~~~~~~~~~~~---~~~p~ilv~nK~D   93 (186)
                      ..+.|+||||.-.-..    +..   ..+..++++++|+|++   +...++....|.+.+..+.   .+.|+++|+||+|
T Consensus       207 ~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiD  286 (390)
T PRK12298        207 RSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKID  286 (390)
T ss_pred             cEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCc
Confidence            3578999999743211    111   2467899999999998   4556777778888877754   4689999999999


Q ss_pred             CCCcccChH-HHHHHHHcC--CcEEEeccCCCCCchHHHHHHHHHHhCCCCcccccCCCCCCCccccCHHHHHHHH
Q 029854           94 VKNRQVKAK-QVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHE  166 (186)
Q Consensus        94 l~~~~~~~~-~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (186)
                      +.+.....+ ...+....+  .+++.+||+++.|++++++.+.+.+.+.+...........+.++...+..+++..
T Consensus       287 l~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~~~~~~~~~~td~~~~~~~~EiiRE~~~  362 (390)
T PRK12298        287 LLDEEEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEENPREEAEEAEAPEKVEFMWDDYHREQLE  362 (390)
T ss_pred             cCChHHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhCcccCCcccccCccHHHHHHHHHHHHhh
Confidence            975332222 223444444  4789999999999999999999999877655444455445555555555555543

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.49  E-value=1.7e-13  Score=106.29  Aligned_cols=97  Identities=14%  Similarity=0.136  Sum_probs=79.5

Q ss_pred             ccccCCccccccccCcEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCc-ccChHHHHHHHHcCCcE
Q 029854           37 QEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQY  114 (186)
Q Consensus        37 ~~~~~~~~~~~~~~ad~vilv~D~~~~~-s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~  114 (186)
                      .++|..+.+.+++++|++++|||++++. +|..+.+|+..+..  .+.|+++|+||+||.+. ....+..+.....++++
T Consensus        23 ~eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~--~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v  100 (245)
T TIGR00157        23 AERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA--QNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQV  100 (245)
T ss_pred             ecccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeE
Confidence            3789999999999999999999999877 89999999987654  57999999999999643 22223333344578899


Q ss_pred             EEeccCCCCCchHHHHHHHHH
Q 029854          115 YEISAKSNYNFEKPFLYLARK  135 (186)
Q Consensus       115 ~~~Sa~~~~gi~~l~~~l~~~  135 (186)
                      +++||++|.|++++|..+...
T Consensus       101 ~~~SAktg~gi~eLf~~l~~~  121 (245)
T TIGR00157       101 LMTSSKNQDGLKELIEALQNR  121 (245)
T ss_pred             EEEecCCchhHHHHHhhhcCC
Confidence            999999999999999988643

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.48  E-value=2e-13  Score=101.68  Aligned_cols=111  Identities=18%  Similarity=0.178  Sum_probs=80.3

Q ss_pred             CeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccCh--
Q 029854           24 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA--  101 (186)
Q Consensus        24 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~--  101 (186)
                      .....+.|+||||+..|.......++.+|++|+|+|+.+...... ...+..+..  .+.|++++.||+|+.......  
T Consensus        67 ~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~--~~~p~ivvlNK~D~~~~~~~~~~  143 (188)
T PF00009_consen   67 ENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILRE--LGIPIIVVLNKMDLIEKELEEII  143 (188)
T ss_dssp             ESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHH--TT-SEEEEEETCTSSHHHHHHHH
T ss_pred             ccccceeecccccccceeecccceecccccceeeeeccccccccc-ccccccccc--cccceEEeeeeccchhhhHHHHH
Confidence            456788899999999988877788999999999999997644332 233333333  378999999999997322211  


Q ss_pred             -HHH-HHHHHc------CCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854          102 -KQV-TFHRKK------NLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus       102 -~~~-~~~~~~------~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                       +.. .+.+..      .++++.+||++|.|+.++++.+.+.+.
T Consensus       144 ~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  144 EEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             HHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             HHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence             111 333333      247999999999999999999998764

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK10218 GTP-binding protein; Provisional

Probab=99.46  E-value=7.9e-13  Score=113.85  Aligned_cols=127  Identities=12%  Similarity=0.119  Sum_probs=95.0

Q ss_pred             cccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEE
Q 029854            8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVL   87 (186)
Q Consensus         8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~il   87 (186)
                      .++.|+++..+...+....+.+.||||||+..|...+..+++.+|++|+|+|+++....+ ...++..+..  .+.|.++
T Consensus        49 E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~--~gip~IV  125 (607)
T PRK10218         49 EKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFA--YGLKPIV  125 (607)
T ss_pred             cccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHH--cCCCEEE
Confidence            457888888888888778899999999999999999999999999999999998754332 2333444333  3789999


Q ss_pred             EEeCCCCCCcccCh---HHHHHHHH-------cCCcEEEeccCCCC----------CchHHHHHHHHHHh
Q 029854           88 CGNKVDVKNRQVKA---KQVTFHRK-------KNLQYYEISAKSNY----------NFEKPFLYLARKLA  137 (186)
Q Consensus        88 v~nK~Dl~~~~~~~---~~~~~~~~-------~~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~  137 (186)
                      ++||+|+.+.....   +...+...       ..++++.+||++|.          |+..+++.++..+.
T Consensus       126 viNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP  195 (607)
T PRK10218        126 VINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP  195 (607)
T ss_pred             EEECcCCCCCchhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence            99999987533222   22222211       24679999999998          57888888877775

>PRK11058 GTPase HflX; Provisional

Probab=99.46  E-value=9.7e-13  Score=109.32  Aligned_cols=121  Identities=17%  Similarity=0.094  Sum_probs=81.6

Q ss_pred             EEEEEEEEECCeEEEEEEEeCCCcccc--CCccc------cccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCC
Q 029854           14 EVHPLDFFTNCGKIRFYCWDTAGQEKF--GGLRD------GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIP   84 (186)
Q Consensus        14 ~~~~~~~~~~~~~~~l~l~Dt~G~~~~--~~~~~------~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~~~p   84 (186)
                      +.....+.+.+. ..+.||||+|..+.  ..++.      ..++.||++|+|+|++++.+++.+..|...+.... .+.|
T Consensus       233 d~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~p  311 (426)
T PRK11058        233 DPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIP  311 (426)
T ss_pred             CCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCC
Confidence            333334444432 25679999998432  12222      23678999999999999888877655544444432 4789


Q ss_pred             EEEEEeCCCCCCcccChHHHHHHHHcCCc-EEEeccCCCCCchHHHHHHHHHHhC
Q 029854           85 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQ-YYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        85 ~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      +++|+||+|+.+...  ..... ...+.+ ++.+||++|.|++++++++.+.+..
T Consensus       312 vIiV~NKiDL~~~~~--~~~~~-~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~~  363 (426)
T PRK11058        312 TLLVMNKIDMLDDFE--PRIDR-DEENKPIRVWLSAQTGAGIPLLFQALTERLSG  363 (426)
T ss_pred             EEEEEEcccCCCchh--HHHHH-HhcCCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence            999999999864311  11111 123445 5889999999999999999998854

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=1.1e-12  Score=108.97  Aligned_cols=127  Identities=16%  Similarity=0.190  Sum_probs=95.9

Q ss_pred             cccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEE
Q 029854            8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVL   87 (186)
Q Consensus         8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~il   87 (186)
                      .-||-..-.+..+. +|..+.+.++||||+-.|..-....+.-++|+|||+|++...-.+.+..+...+..   +.-+|.
T Consensus       107 GITIkaQtasify~-~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~---~L~iIp  182 (650)
T KOG0462|consen  107 GITIKAQTASIFYK-DGQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA---GLAIIP  182 (650)
T ss_pred             CcEEEeeeeEEEEE-cCCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc---CCeEEE
Confidence            33444333333332 47889999999999999999999999999999999999987665655554444443   788999


Q ss_pred             EEeCCCCCCcccChHHHHHHHHcC---CcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           88 CGNKVDVKNRQVKAKQVTFHRKKN---LQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        88 v~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      |.||+|++...+..-..++...+.   .+++.+|||+|.|++++|.++++.+.-
T Consensus       183 VlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPp  236 (650)
T KOG0462|consen  183 VLNKIDLPSADPERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPP  236 (650)
T ss_pred             eeeccCCCCCCHHHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCC
Confidence            999999997655443333333333   479999999999999999999988843

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.45  E-value=3.4e-13  Score=116.06  Aligned_cols=125  Identities=12%  Similarity=0.172  Sum_probs=92.5

Q ss_pred             ceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEe
Q 029854           11 IGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGN   90 (186)
Q Consensus        11 ig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~n   90 (186)
                      -|+++..+...+....+++.||||||+..|...+..+++.+|++++|+|+++.. ......|+..+...  ++|+++++|
T Consensus        48 rGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~--~ip~IVviN  124 (594)
T TIGR01394        48 RGITILAKNTAIRYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL--GLKPIVVIN  124 (594)
T ss_pred             CCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC--CCCEEEEEE
Confidence            455555555555556788999999999999988899999999999999998742 33445666666553  789999999


Q ss_pred             CCCCCCccc---ChHHHHHHH-------HcCCcEEEeccCCCC----------CchHHHHHHHHHHhC
Q 029854           91 KVDVKNRQV---KAKQVTFHR-------KKNLQYYEISAKSNY----------NFEKPFLYLARKLAG  138 (186)
Q Consensus        91 K~Dl~~~~~---~~~~~~~~~-------~~~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~~  138 (186)
                      |+|+.+...   ..+...+..       ...++++.+||++|.          |+..+|+.++..+..
T Consensus       125 KiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~  192 (594)
T TIGR01394       125 KIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA  192 (594)
T ss_pred             CCCCCCcCHHHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence            999865322   222223322       234689999999996          799999999888754

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.45  E-value=1.5e-12  Score=109.41  Aligned_cols=116  Identities=18%  Similarity=0.168  Sum_probs=80.3

Q ss_pred             eEEEEEEEeCCCccccC----Cccc---cccccCcEEEEEEeCCCh----hhHHhHHHHHHHHHhhc------------C
Q 029854           25 GKIRFYCWDTAGQEKFG----GLRD---GYYIHGQCAIIMFDVTAR----LTYKNVPTWHRDLCRVC------------E   81 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~----~~~~---~~~~~ad~vilv~D~~~~----~s~~~i~~~~~~~~~~~------------~   81 (186)
                      ....+.||||||.....    .+..   ..+..++++|+|+|+++.    +.+.++..|..++..+.            .
T Consensus       204 ~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~  283 (500)
T PRK12296        204 GDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLA  283 (500)
T ss_pred             CCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhc
Confidence            34678999999964211    1212   235679999999999853    34555555555554432            3


Q ss_pred             CCCEEEEEeCCCCCCcccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029854           82 NIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                      +.|+|||+||+|+.+.....+ ........+++++.+||+++.|+++++.+|.+.+....
T Consensus       284 ~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        284 ERPRLVVLNKIDVPDARELAEFVRPELEARGWPVFEVSAASREGLRELSFALAELVEEAR  343 (500)
T ss_pred             CCCEEEEEECccchhhHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence            689999999999975322122 22233445789999999999999999999999886643

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.45  E-value=5.2e-13  Score=114.63  Aligned_cols=102  Identities=23%  Similarity=0.250  Sum_probs=74.2

Q ss_pred             EEEEEeCCCccccCCccccccccCcEEEEEEeCCC---hhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcc------
Q 029854           28 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ------   98 (186)
Q Consensus        28 ~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~---~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~------   98 (186)
                      .+.||||||++.|..++..+++.+|++++|+|+++   +.+++.+..    +..  .+.|+++++||+|+.+.-      
T Consensus        70 ~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~----l~~--~~vpiIVv~NK~Dl~~~~~~~~~~  143 (590)
T TIGR00491        70 GLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM--YKTPFVVAANKIDRIPGWRSHEGR  143 (590)
T ss_pred             cEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHH----HHH--cCCCEEEEEECCCccchhhhccCc
Confidence            38899999999999999999999999999999997   445544322    222  378999999999996310      


Q ss_pred             --------cChHH------------HHHHH------------Hc--CCcEEEeccCCCCCchHHHHHHHHH
Q 029854           99 --------VKAKQ------------VTFHR------------KK--NLQYYEISAKSNYNFEKPFLYLARK  135 (186)
Q Consensus        99 --------~~~~~------------~~~~~------------~~--~~~~~~~Sa~~~~gi~~l~~~l~~~  135 (186)
                              .....            ..+..            .+  .++++.+||++|+|+++++.++...
T Consensus       144 ~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l  214 (590)
T TIGR00491       144 PFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL  214 (590)
T ss_pred             hHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence                    00000            01110            11  2579999999999999999988653

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.44  E-value=9.1e-13  Score=110.12  Aligned_cols=118  Identities=21%  Similarity=0.169  Sum_probs=81.9

Q ss_pred             ccceEEEEEEEEEECCeEEEEEEEeCCCccc--------cCCccccccccCcEEEEEEeCCChhhHH--hHHHHHHHHHh
Q 029854            9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--------FGGLRDGYYIHGQCAIIMFDVTARLTYK--NVPTWHRDLCR   78 (186)
Q Consensus         9 ~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~--------~~~~~~~~~~~ad~vilv~D~~~~~s~~--~i~~~~~~~~~   78 (186)
                      |.+..+.......+++  ..+.+|||||+..        +......++..||++|+|+|+++..+..  .+..|+..   
T Consensus        33 ~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~---  107 (435)
T PRK00093         33 PGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRK---  107 (435)
T ss_pred             CCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH---
Confidence            3344455555555555  6789999999987        2223455678999999999998854432  23444443   


Q ss_pred             hcCCCCEEEEEeCCCCCCcccChHHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHH
Q 029854           79 VCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        79 ~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                        .+.|+++|+||+|+.+..  .....+ ...++ .++++||++|.|+.++|+.+....
T Consensus       108 --~~~piilv~NK~D~~~~~--~~~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~~~~  161 (435)
T PRK00093        108 --SNKPVILVVNKVDGPDEE--ADAYEF-YSLGLGEPYPISAEHGRGIGDLLDAILEEL  161 (435)
T ss_pred             --cCCcEEEEEECccCccch--hhHHHH-HhcCCCCCEEEEeeCCCCHHHHHHHHHhhC
Confidence              278999999999975421  112222 34455 489999999999999999998743

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.44  E-value=7.8e-13  Score=110.26  Aligned_cols=119  Identities=18%  Similarity=0.142  Sum_probs=79.6

Q ss_pred             cccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHH--HHHhhcCCCCE
Q 029854            8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHR--DLCRVCENIPI   85 (186)
Q Consensus         8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~--~~~~~~~~~p~   85 (186)
                      ..++..+.....+.  ...+.+.||||||+++|.......++.+|++|+|+|+++..++.. ..+..  .+.......|+
T Consensus        68 ~rg~Tid~~~~~~~--~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~-~~t~~~~~~~~~~~~~~i  144 (426)
T TIGR00483        68 ERGVTIDVAHWKFE--TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQ-PQTREHAFLARTLGINQL  144 (426)
T ss_pred             hcCceEEEEEEEEc--cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccC-CchHHHHHHHHHcCCCeE
Confidence            34455555555544  345788999999999887666667889999999999998754321 12211  12222334579


Q ss_pred             EEEEeCCCCCCc-c-----cChHHHHHHHHcC-----CcEEEeccCCCCCchHHH
Q 029854           86 VLCGNKVDVKNR-Q-----VKAKQVTFHRKKN-----LQYYEISAKSNYNFEKPF  129 (186)
Q Consensus        86 ilv~nK~Dl~~~-~-----~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~  129 (186)
                      +|++||+|+.+. .     ...+...+++..+     ++++++||++|.|+.+++
T Consensus       145 IVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       145 IVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             EEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence            999999999642 1     1122334555554     579999999999998754

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.43  E-value=9.5e-13  Score=109.73  Aligned_cols=106  Identities=15%  Similarity=0.052  Sum_probs=70.7

Q ss_pred             CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhH-HHHHHHHHhhcCCCCEEEEEeCCCCCCccc--
Q 029854           23 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQV--   99 (186)
Q Consensus        23 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--   99 (186)
                      +...+.+.||||||+++|.......++.||++|+|+|+++..++... ..++..+ ......|+++++||+|+.+...  
T Consensus        80 ~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~-~~~~~~~iivviNK~Dl~~~~~~~  158 (425)
T PRK12317         80 ETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLA-RTLGINQLIVAINKMDAVNYDEKR  158 (425)
T ss_pred             ecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHH-HHcCCCeEEEEEEccccccccHHH
Confidence            34567899999999998876555567899999999999973222221 1222222 2222346999999999974211  


Q ss_pred             ----ChHHHHHHHHcC-----CcEEEeccCCCCCchHHH
Q 029854          100 ----KAKQVTFHRKKN-----LQYYEISAKSNYNFEKPF  129 (186)
Q Consensus       100 ----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~  129 (186)
                          ..+...++...+     .+++.+||++|.|+.++.
T Consensus       159 ~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        159 YEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             HHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence                112234444444     469999999999998754

>cd01895 EngA2 EngA2 subfamily

Probab=99.43  E-value=4.1e-12  Score=92.21  Aligned_cols=118  Identities=18%  Similarity=0.166  Sum_probs=77.8

Q ss_pred             EEEEEEEEEECCeEEEEEEEeCCCccccCCc-----------cccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC
Q 029854           13 VEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL-----------RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE   81 (186)
Q Consensus        13 ~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~-----------~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~   81 (186)
                      .+.....+..++.  .+.+|||||.......           ....+.++|++++|+|++++.+.... .+...+..  .
T Consensus        38 ~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~--~  112 (174)
T cd01895          38 RDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDL-RIAGLILE--E  112 (174)
T ss_pred             cCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh--c
Confidence            3444444444554  4679999997544211           12246789999999999998776543 33333322  3


Q ss_pred             CCCEEEEEeCCCCCCcc--cChHHH-HHHHHc----CCcEEEeccCCCCCchHHHHHHHHH
Q 029854           82 NIPIVLCGNKVDVKNRQ--VKAKQV-TFHRKK----NLQYYEISAKSNYNFEKPFLYLARK  135 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~~--~~~~~~-~~~~~~----~~~~~~~Sa~~~~gi~~l~~~l~~~  135 (186)
                      +.|+++++||+|+.+..  ...... .+....    ..+++++||++|.|+.++++.+.+.
T Consensus       113 ~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         113 GKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             CCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence            68999999999997542  212212 222333    3689999999999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK00089 era GTPase Era; Reviewed

Probab=99.42  E-value=1.7e-12  Score=103.16  Aligned_cols=137  Identities=14%  Similarity=0.118  Sum_probs=90.5

Q ss_pred             eEEEEEEEeCCCccccC--------CccccccccCcEEEEEEeCCChhhHHhHHHH-HHHHHhhcCCCCEEEEEeCCCCC
Q 029854           25 GKIRFYCWDTAGQEKFG--------GLRDGYYIHGQCAIIMFDVTARLTYKNVPTW-HRDLCRVCENIPIVLCGNKVDVK   95 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~--------~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~-~~~~~~~~~~~p~ilv~nK~Dl~   95 (186)
                      ...++.+|||||.....        ......+.++|++++|+|+++..+  ....+ ++.+..  .+.|+++|+||+|+.
T Consensus        51 ~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~--~~~~~i~~~l~~--~~~pvilVlNKiDl~  126 (292)
T PRK00089         51 DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIG--PGDEFILEKLKK--VKTPVILVLNKIDLV  126 (292)
T ss_pred             CCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCC--hhHHHHHHHHhh--cCCCEEEEEECCcCC
Confidence            34789999999975432        223446778999999999998322  22222 222222  368999999999997


Q ss_pred             -CcccChH-HHHHHHHcC-CcEEEeccCCCCCchHHHHHHHHHHhCCCCcccccCCCCCCCccccCHHHHHHH
Q 029854           96 -NRQVKAK-QVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQH  165 (186)
Q Consensus        96 -~~~~~~~-~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (186)
                       ....... ...+....+ .+++.+||++|.|++++++.+.+.+...+...........+.+....+..+++.
T Consensus       127 ~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~~~~y~~~~~td~~~r~~~~EiiRe~~  199 (292)
T PRK00089        127 KDKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLPEGPPYYPEDQITDRPERFLAAEIIREKL  199 (292)
T ss_pred             CCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence             3222222 223444333 579999999999999999999999987765555555555555555555444443

>cd00880 Era_like Era (E

Probab=99.41  E-value=3.7e-12  Score=90.63  Aligned_cols=107  Identities=17%  Similarity=0.139  Sum_probs=78.3

Q ss_pred             EEEEEEEeCCCccccCCccc-------cccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcc
Q 029854           26 KIRFYCWDTAGQEKFGGLRD-------GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ   98 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~~~~-------~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~   98 (186)
                      ...+.+|||+|+..+.....       .+++.+|++++|+|+++..+..... |......  .+.|+++|+||+|+....
T Consensus        44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~~~--~~~~~ivv~nK~D~~~~~  120 (163)
T cd00880          44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEK-LLELLRE--RGKPVLLVLNKIDLLPEE  120 (163)
T ss_pred             CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHh--cCCeEEEEEEccccCChh
Confidence            56889999999877654443       4788999999999999987665543 3333322  479999999999987533


Q ss_pred             cChHH-----HHHHHHcCCcEEEeccCCCCCchHHHHHHHHH
Q 029854           99 VKAKQ-----VTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  135 (186)
Q Consensus        99 ~~~~~-----~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  135 (186)
                      .....     .......+.+++.+||++|.|+++++.++.+.
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~  162 (163)
T cd00880         121 EEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEA  162 (163)
T ss_pred             hHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence            22221     12223335789999999999999999999865

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.40  E-value=2e-12  Score=113.93  Aligned_cols=126  Identities=15%  Similarity=0.146  Sum_probs=85.7

Q ss_pred             ccceEEEEEEEEEECCeEEEEEEEeCCCccc----------cCCcc-ccccccCcEEEEEEeCCChhhHHhHHHHHHHHH
Q 029854            9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------FGGLR-DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC   77 (186)
Q Consensus         9 ~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~~-~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~   77 (186)
                      |++..+.....+.+++..  +.||||||..+          |..++ ...++.||++++|+|+++..+++.+. ++..+.
T Consensus       482 ~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~-i~~~~~  558 (712)
T PRK09518        482 AGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLK-VMSMAV  558 (712)
T ss_pred             CCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHH
Confidence            444466666666777765  45899999643          11111 23468899999999999988877654 334443


Q ss_pred             hhcCCCCEEEEEeCCCCCCcccChHHH-HHHHHc----CCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           78 RVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKK----NLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        78 ~~~~~~p~ilv~nK~Dl~~~~~~~~~~-~~~~~~----~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      .  .+.|+++|+||+|+.+........ .+...+    ..+++.+||++|.|++++|..+.+.+...
T Consensus       559 ~--~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~  623 (712)
T PRK09518        559 D--AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALESW  623 (712)
T ss_pred             H--cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            3  378999999999997532211111 122221    24679999999999999999999887643

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.40  E-value=2.9e-12  Score=112.93  Aligned_cols=122  Identities=21%  Similarity=0.150  Sum_probs=80.5

Q ss_pred             ccceEEEEEEEEEECCeEEEEEEEeCCCccc--------cCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc
Q 029854            9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--------FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC   80 (186)
Q Consensus         9 ~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~--------~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~   80 (186)
                      |++..+.......+++  ..+.+|||||.+.        +......+++.||++|+|+|+++..+..+ ..|...+..  
T Consensus       307 pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~--  381 (712)
T PRK09518        307 PGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR--  381 (712)
T ss_pred             CCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh--
Confidence            3343444433333344  4678899999764        22334557889999999999987432221 245555443  


Q ss_pred             CCCCEEEEEeCCCCCCcccChHHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           81 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      .+.|+++|+||+|+....  .....+. ..+. ..+++||++|.||.++|++++..+..
T Consensus       382 ~~~pvIlV~NK~D~~~~~--~~~~~~~-~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        382 AGKPVVLAVNKIDDQASE--YDAAEFW-KLGLGEPYPISAMHGRGVGDLLDEALDSLKV  437 (712)
T ss_pred             cCCCEEEEEECcccccch--hhHHHHH-HcCCCCeEEEECCCCCCchHHHHHHHHhccc
Confidence            479999999999986432  1112221 2232 46799999999999999999998865

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.36  E-value=7.7e-12  Score=104.31  Aligned_cols=119  Identities=18%  Similarity=0.198  Sum_probs=83.0

Q ss_pred             ceEEEEEEEEEECCeEEEEEEEeCCCcc--------ccCCccccccccCcEEEEEEeCCChhhHHh--HHHHHHHHHhhc
Q 029854           11 IGVEVHPLDFFTNCGKIRFYCWDTAGQE--------KFGGLRDGYYIHGQCAIIMFDVTARLTYKN--VPTWHRDLCRVC   80 (186)
Q Consensus        11 ig~~~~~~~~~~~~~~~~l~l~Dt~G~~--------~~~~~~~~~~~~ad~vilv~D~~~~~s~~~--i~~~~~~~~~~~   80 (186)
                      +..+.......+++.  .+.+|||||..        .+......+++.||++++|+|+++..+...  +..|+.   +  
T Consensus        33 ~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~---~--  105 (429)
T TIGR03594        33 VTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLR---K--  105 (429)
T ss_pred             cccCceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHH---H--
Confidence            333444444455554  58899999963        334455667899999999999987544332  333433   2  


Q ss_pred             CCCCEEEEEeCCCCCCcccChHHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           81 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      .+.|+++|+||+|+.+....  ... ...+++ +++.+||++|.|+.++++.+...+...
T Consensus       106 ~~~piilVvNK~D~~~~~~~--~~~-~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~~  162 (429)
T TIGR03594       106 SGKPVILVANKIDGKKEDAV--AAE-FYSLGFGEPIPISAEHGRGIGDLLDAILELLPEE  162 (429)
T ss_pred             hCCCEEEEEECccCCccccc--HHH-HHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCcc
Confidence            36899999999998643321  122 234565 799999999999999999999888653

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.36  E-value=8.3e-12  Score=93.12  Aligned_cols=125  Identities=17%  Similarity=0.135  Sum_probs=80.0

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCc----------cccCCccccccccC---cEEEEEEeCCChhhHHh--HH
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQ----------EKFGGLRDGYYIHG---QCAIIMFDVTARLTYKN--VP   70 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~----------~~~~~~~~~~~~~a---d~vilv~D~~~~~s~~~--i~   70 (186)
                      .+.+|.|.........+   ...+.||||||.          +.+..+...+++.+   +++++|+|.+++.+...  +.
T Consensus        52 ~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~  128 (196)
T PRK00454         52 RTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMI  128 (196)
T ss_pred             cccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHH
Confidence            45566665543332222   367899999994          33334445555544   68889999887544332  22


Q ss_pred             HHHHHHHhhcCCCCEEEEEeCCCCCCcccChH----HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           71 TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK----QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        71 ~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      .|+   ..  .+.|+++++||+|+.+....+.    ..........+++++||++|.|++++++.+.+.+.+
T Consensus       129 ~~l---~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        129 EWL---KE--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             HHH---HH--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            232   22  3689999999999864321111    223333335789999999999999999999877643

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.35  E-value=1.4e-11  Score=102.93  Aligned_cols=124  Identities=15%  Similarity=0.134  Sum_probs=81.4

Q ss_pred             ccceEEEEEEEEEECCeEEEEEEEeCCCccccCCcc-----------ccccccCcEEEEEEeCCChhhHHhHHHHHHHHH
Q 029854            9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR-----------DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC   77 (186)
Q Consensus         9 ~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~-----------~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~   77 (186)
                      |.+..+.....+..++.  .+.+|||||..+...+.           ..+++.+|++|+|+|+++..+.++. .++..+.
T Consensus       205 ~gtt~~~~~~~~~~~~~--~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~  281 (435)
T PRK00093        205 AGTTRDSIDTPFERDGQ--KYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDL-RIAGLAL  281 (435)
T ss_pred             CCceEEEEEEEEEECCe--eEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHH
Confidence            33334444444444544  46789999975433221           2357889999999999988776653 3333333


Q ss_pred             hhcCCCCEEEEEeCCCCCCcccChHHH-HHHHH----cCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854           78 RVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRK----KNLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus        78 ~~~~~~p~ilv~nK~Dl~~~~~~~~~~-~~~~~----~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                      +  .+.|+++++||+|+.+.....+.. .+...    ..++++++||++|.|+++++..+.+...
T Consensus       282 ~--~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~  344 (435)
T PRK00093        282 E--AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYE  344 (435)
T ss_pred             H--cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            3  368999999999997432212211 12122    2468999999999999999999887654

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.34  E-value=1.3e-11  Score=106.79  Aligned_cols=122  Identities=13%  Similarity=0.019  Sum_probs=80.9

Q ss_pred             ccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCCh---hhHHhHHHHHHHHHhhcCCC
Q 029854            7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVCENI   83 (186)
Q Consensus         7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~---~s~~~i~~~~~~~~~~~~~~   83 (186)
                      ...||...|..  +...+ ...+.||||||+++|.......+.++|++++|+|+++.   .+.+.+    ..+ .. .+.
T Consensus        34 rGiTI~l~~~~--~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl----~il-~~-lgi  104 (614)
T PRK10512         34 RGMTIDLGYAY--WPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHL----AIL-QL-TGN  104 (614)
T ss_pred             CCceEEeeeEE--EecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHH----HHH-HH-cCC
Confidence            35566544443  32221 23478999999999976666778899999999999873   333332    212 22 245


Q ss_pred             C-EEEEEeCCCCCCcccC----hHHHHHHHHcC---CcEEEeccCCCCCchHHHHHHHHHHh
Q 029854           84 P-IVLCGNKVDVKNRQVK----AKQVTFHRKKN---LQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus        84 p-~ilv~nK~Dl~~~~~~----~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                      | ++||+||+|+.+....    .+...+....+   .+++.+||++|.|++++++.|.....
T Consensus       105 ~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~  166 (614)
T PRK10512        105 PMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLPE  166 (614)
T ss_pred             CeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhc
Confidence            5 6799999999753211    12223433333   68999999999999999999986543

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.34  E-value=5.3e-12  Score=95.30  Aligned_cols=73  Identities=18%  Similarity=0.207  Sum_probs=60.5

Q ss_pred             CeEEEEEEEeCCCccccCCccccccccC-cEEEEEEeCCCh-hhHHhHHHHHHHHHhh----cCCCCEEEEEeCCCCCC
Q 029854           24 CGKIRFYCWDTAGQEKFGGLRDGYYIHG-QCAIIMFDVTAR-LTYKNVPTWHRDLCRV----CENIPIVLCGNKVDVKN   96 (186)
Q Consensus        24 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~a-d~vilv~D~~~~-~s~~~i~~~~~~~~~~----~~~~p~ilv~nK~Dl~~   96 (186)
                      +..+.+.+|||||+.+++..+..+++++ +++|+|+|+++. .++..+..|+..+...    ....|+++++||+|+..
T Consensus        45 ~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          45 GKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             CCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence            4567899999999999998888899998 999999999997 6777776666554332    25899999999999864

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.34  E-value=6.8e-12  Score=92.67  Aligned_cols=115  Identities=17%  Similarity=0.133  Sum_probs=71.2

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCcc----------ccCCcccccccc---CcEEEEEEeCCChhhHHhHHHH
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQE----------KFGGLRDGYYIH---GQCAIIMFDVTARLTYKNVPTW   72 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~----------~~~~~~~~~~~~---ad~vilv~D~~~~~s~~~i~~~   72 (186)
                      .+.++.|.......+.+++   .+.+|||||..          .+..+...+++.   ++++++|+|++++.+.... .+
T Consensus        46 ~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~  121 (179)
T TIGR03598        46 RTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EM  121 (179)
T ss_pred             cccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HH
Confidence            3455666554433344343   58899999953          233333445553   5899999999886555443 22


Q ss_pred             HHHHHhhcCCCCEEEEEeCCCCCCcc-c---ChHHHHHHHHcC--CcEEEeccCCCCCch
Q 029854           73 HRDLCRVCENIPIVLCGNKVDVKNRQ-V---KAKQVTFHRKKN--LQYYEISAKSNYNFE  126 (186)
Q Consensus        73 ~~~~~~~~~~~p~ilv~nK~Dl~~~~-~---~~~~~~~~~~~~--~~~~~~Sa~~~~gi~  126 (186)
                      +..+..  .+.|+++++||+|+.+.. .   ..+..+.+...+  .+++++||++|.|++
T Consensus       122 ~~~~~~--~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       122 LEWLRE--RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             HHHHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence            233322  368999999999986422 1   112223344433  479999999999984

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.33  E-value=6.7e-12  Score=108.05  Aligned_cols=100  Identities=23%  Similarity=0.298  Sum_probs=72.8

Q ss_pred             EEEEeCCCccccCCccccccccCcEEEEEEeCCC---hhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCc-cc-----
Q 029854           29 FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QV-----   99 (186)
Q Consensus        29 l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~---~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-~~-----   99 (186)
                      +.||||||++.|..++...++.+|++|+|+|+++   +.+++.+..    +..  .+.|+++++||+|+... ..     
T Consensus        73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~--~~vpiIvviNK~D~~~~~~~~~~~~  146 (586)
T PRK04004         73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR--RKTPFVVAANKIDRIPGWKSTEDAP  146 (586)
T ss_pred             EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH--cCCCEEEEEECcCCchhhhhhcCch
Confidence            6899999999999998888999999999999997   556554432    222  37899999999998521 00     


Q ss_pred             ------------Ch-------HHHHHHHHc---------------CCcEEEeccCCCCCchHHHHHHHH
Q 029854          100 ------------KA-------KQVTFHRKK---------------NLQYYEISAKSNYNFEKPFLYLAR  134 (186)
Q Consensus       100 ------------~~-------~~~~~~~~~---------------~~~~~~~Sa~~~~gi~~l~~~l~~  134 (186)
                                  ..       +........               .++++.+||++|.|+.+++..+..
T Consensus       147 ~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~  215 (586)
T PRK04004        147 FLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG  215 (586)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence                        00       000111111               257899999999999999988764

>cd04163 Era Era subfamily

Probab=99.33  E-value=2e-11  Score=87.81  Aligned_cols=110  Identities=14%  Similarity=0.087  Sum_probs=75.2

Q ss_pred             CCeEEEEEEEeCCCccccCC--------ccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCC
Q 029854           23 NCGKIRFYCWDTAGQEKFGG--------LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV   94 (186)
Q Consensus        23 ~~~~~~l~l~Dt~G~~~~~~--------~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl   94 (186)
                      ......+.+|||||......        .....+..+|++++|+|+++..+.. ...+...+.+.  +.|+++|+||+|+
T Consensus        47 ~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~-~~~~~~~~~~~--~~~~iiv~nK~Dl  123 (168)
T cd04163          47 TDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEG-DEFILELLKKS--KTPVILVLNKIDL  123 (168)
T ss_pred             EcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCch-HHHHHHHHHHh--CCCEEEEEEchhc
Confidence            33457888999999765432        2334578899999999999872211 12333334332  6899999999999


Q ss_pred             CC-cccChHHH-HHHHHc-CCcEEEeccCCCCCchHHHHHHHHH
Q 029854           95 KN-RQVKAKQV-TFHRKK-NLQYYEISAKSNYNFEKPFLYLARK  135 (186)
Q Consensus        95 ~~-~~~~~~~~-~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~  135 (186)
                      .. .....+.. .+.... ..+++.+|++++.|++++++.|.+.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~  167 (168)
T cd04163         124 VKDKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKY  167 (168)
T ss_pred             cccHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence            73 22222222 333334 2689999999999999999999765

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.33  E-value=5.7e-12  Score=95.41  Aligned_cols=101  Identities=21%  Similarity=0.184  Sum_probs=66.2

Q ss_pred             EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCccc------
Q 029854           26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV------   99 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~------   99 (186)
                      ...+.||||||+++|.......++.||++|+|+|+++...-+. ......+. .....++|+|+||+|+.+...      
T Consensus        76 ~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~-~~~~~~iIvviNK~D~~~~~~~~~~~i  153 (208)
T cd04166          76 KRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILS-LLGIRHVVVAVNKMDLVDYSEEVFEEI  153 (208)
T ss_pred             CceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHH-HcCCCcEEEEEEchhcccCCHHHHHHH
Confidence            4467789999998886656667889999999999987532111 12122222 222245788999999864211      


Q ss_pred             ChHHHHHHHHcC---CcEEEeccCCCCCchHH
Q 029854          100 KAKQVTFHRKKN---LQYYEISAKSNYNFEKP  128 (186)
Q Consensus       100 ~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l  128 (186)
                      ..+...+...++   .+++.+||++|.|+.+.
T Consensus       154 ~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         154 VADYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            112224445555   35899999999999853

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.33  E-value=1.9e-11  Score=108.06  Aligned_cols=123  Identities=13%  Similarity=0.094  Sum_probs=91.6

Q ss_pred             ccceEEEEEEEEEECCeEEEEEEEeCCCccccCCc----------ccccc--ccCcEEEEEEeCCChhhHHhHHHHHHHH
Q 029854            9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL----------RDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDL   76 (186)
Q Consensus         9 ~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~----------~~~~~--~~ad~vilv~D~~~~~s~~~i~~~~~~~   76 (186)
                      ++.|..+..++..+......+.+|||||...+...          .+.++  ..+|++++|+|+++.+.-   ..|..++
T Consensus        32 n~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~---l~l~~ql  108 (772)
T PRK09554         32 NWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERN---LYLTLQL  108 (772)
T ss_pred             CCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhh---HHHHHHH
Confidence            44666666666666666778899999999877542          12233  379999999999985432   2344555


Q ss_pred             HhhcCCCCEEEEEeCCCCCC-cccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029854           77 CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        77 ~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      .+.  +.|+++++||+|+.+ +.......++.+.++++++.+||++|.|++++.+.+....
T Consensus       109 ~e~--giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        109 LEL--GIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGIEALKLAIDRHQ  167 (772)
T ss_pred             HHc--CCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhh
Confidence            443  799999999999874 3443445577788899999999999999999999988765

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.33  E-value=4.2e-12  Score=105.26  Aligned_cols=111  Identities=15%  Similarity=0.118  Sum_probs=77.5

Q ss_pred             EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccC----h
Q 029854           26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK----A  101 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~----~  101 (186)
                      ...+.+|||||+++|...+...+..+|++|+|+|+++..........+..+ ......|+++++||+|+.+....    .
T Consensus        79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~gi~~iIVvvNK~Dl~~~~~~~~~~~  157 (406)
T TIGR03680        79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EIIGIKNIVIVQNKIDLVSKEKALENYE  157 (406)
T ss_pred             ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHcCCCeEEEEEEccccCCHHHHHHHHH
Confidence            468899999999999877777788899999999999642111122222222 22223579999999999753211    1


Q ss_pred             HHHHHHHHc---CCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854          102 KQVTFHRKK---NLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus       102 ~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                      +...+....   +++++++||++|.|+++++++|...+.
T Consensus       158 ~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       158 EIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             HHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            222333332   568999999999999999999987664

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.31  E-value=1.6e-11  Score=102.07  Aligned_cols=105  Identities=17%  Similarity=0.215  Sum_probs=80.8

Q ss_pred             EEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCEEEEEeCCCCCCcccChHHHH
Q 029854           27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVT  105 (186)
Q Consensus        27 ~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~  105 (186)
                      -.|.|.||||++.|..|+..-.+=+|++|||+|+.+.-    ..+.++.+.+.. .+.|++++.||+|.++........+
T Consensus        55 ~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv----~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~e  130 (509)
T COG0532          55 PGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGV----MPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQE  130 (509)
T ss_pred             ceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCc----chhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHH
Confidence            46778899999999999999999999999999999852    124445555543 5899999999999986544333333


Q ss_pred             HHHHcC---------CcEEEeccCCCCCchHHHHHHHHHH
Q 029854          106 FHRKKN---------LQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus       106 ~~~~~~---------~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      +. +++         ..++.+||++|+|+.+|+..++-..
T Consensus       131 l~-~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~a  169 (509)
T COG0532         131 LQ-EYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLA  169 (509)
T ss_pred             HH-HcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHH
Confidence            22 223         4699999999999999999887544

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.31  E-value=9.9e-12  Score=103.13  Aligned_cols=107  Identities=17%  Similarity=0.140  Sum_probs=73.7

Q ss_pred             EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChh----hHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccC-
Q 029854           26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL----TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK-  100 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~----s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-  100 (186)
                      ..++.||||||+++|..........+|++++|+|+++..    +.+.+.    .+. .....|+++|+||+|+.+.... 
T Consensus        84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~----~l~-~~~i~~iiVVlNK~Dl~~~~~~~  158 (411)
T PRK04000         84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM----ALD-IIGIKNIVIVQNKIDLVSKERAL  158 (411)
T ss_pred             ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH----HHH-HcCCCcEEEEEEeeccccchhHH
Confidence            368899999999887654444455679999999999642    333222    121 1223479999999999753221 


Q ss_pred             ---hHHHHHHHHc---CCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854          101 ---AKQVTFHRKK---NLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus       101 ---~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                         .+...++...   +.+++++||++|.|++++++.|...+.
T Consensus       159 ~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~  201 (411)
T PRK04000        159 ENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP  201 (411)
T ss_pred             HHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence               1122333322   468999999999999999999988764

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.31  E-value=5.9e-12  Score=96.10  Aligned_cols=100  Identities=17%  Similarity=0.113  Sum_probs=65.8

Q ss_pred             eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChh-------hHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCc
Q 029854           25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-------TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR   97 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~-------s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~   97 (186)
                      ....+.+|||||+..|...+...++.+|++|+|+|+++..       ..+....| ... ......|+++++||+|+...
T Consensus        75 ~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~iiivvNK~Dl~~~  152 (219)
T cd01883          75 EKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLA-RTLGVKQLIVAVNKMDDVTV  152 (219)
T ss_pred             CCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHH-HHcCCCeEEEEEEccccccc
Confidence            4567889999999887766666678899999999999842       11111222 222 22234689999999999732


Q ss_pred             ccC----hH----HHHHHHHcC-----CcEEEeccCCCCCch
Q 029854           98 QVK----AK----QVTFHRKKN-----LQYYEISAKSNYNFE  126 (186)
Q Consensus        98 ~~~----~~----~~~~~~~~~-----~~~~~~Sa~~~~gi~  126 (186)
                      ...    ..    ...+....+     ++++.+||++|.|+.
T Consensus       153 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         153 NWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            111    11    112233333     569999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.29  E-value=3.2e-11  Score=86.95  Aligned_cols=113  Identities=17%  Similarity=0.142  Sum_probs=75.0

Q ss_pred             EEEEEEEEEECCeEEEEEEEeCCCccccCCc------ccccc--ccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC
Q 029854           13 VEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL------RDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP   84 (186)
Q Consensus        13 ~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~------~~~~~--~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p   84 (186)
                      ++...-.+.+.+  ..+.|+|+||.......      ...++  ...|++|+|+|+++...-   .....++.+.  +.|
T Consensus        35 v~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~r~---l~l~~ql~e~--g~P  107 (156)
T PF02421_consen   35 VEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNLERN---LYLTLQLLEL--GIP  107 (156)
T ss_dssp             SEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGHHHH---HHHHHHHHHT--TSS
T ss_pred             eeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCHHHH---HHHHHHHHHc--CCC
Confidence            345555555555  56667799997554432      23444  579999999999985421   1233444443  799


Q ss_pred             EEEEEeCCCCCCc-ccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHH
Q 029854           85 IVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  132 (186)
Q Consensus        85 ~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  132 (186)
                      ++++.||+|+..+ ........+.+.++++++.+||++|.|++++++.+
T Consensus       108 ~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I  156 (156)
T PF02421_consen  108 VVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELKDAI  156 (156)
T ss_dssp             EEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred             EEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence            9999999998743 23334557778889999999999999999999865

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>COG1159 Era GTPase [General function prediction only]

Probab=99.29  E-value=2e-11  Score=95.16  Aligned_cols=143  Identities=15%  Similarity=0.114  Sum_probs=104.3

Q ss_pred             eEEEEEEEeCCCccc--------cCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCC
Q 029854           25 GKIRFYCWDTAGQEK--------FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN   96 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~--------~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~   96 (186)
                      ...++.|.||||.-+        +.......++++|+++||+|++....-.+ ...++.++.  .+.|++++.||+|...
T Consensus        52 ~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d-~~il~~lk~--~~~pvil~iNKID~~~  128 (298)
T COG1159          52 DNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGD-EFILEQLKK--TKTPVILVVNKIDKVK  128 (298)
T ss_pred             CCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccH-HHHHHHHhh--cCCCeEEEEEccccCC
Confidence            478899999999532        23345667889999999999998533221 122333333  3679999999999875


Q ss_pred             cccC-hHHHHHHHH-cC-CcEEEeccCCCCCchHHHHHHHHHHhCCCCcccccCCCCCCCccccCHHHHHHHHHHHH
Q 029854           97 RQVK-AKQVTFHRK-KN-LQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELA  170 (186)
Q Consensus        97 ~~~~-~~~~~~~~~-~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (186)
                      .... ....+.+.. .. ..++.+||++|.|++.+.+.+...+.+.+...........+.++...+..+++.=..++
T Consensus       129 ~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEiiREk~~~~l~  205 (298)
T COG1159         129 PKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEIIREKLLLLLR  205 (298)
T ss_pred             cHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHHHHHHHHHhcc
Confidence            4331 222222222 22 36999999999999999999999999999999888888889888888888877655444

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.25  E-value=4.3e-11  Score=107.90  Aligned_cols=101  Identities=20%  Similarity=0.278  Sum_probs=72.6

Q ss_pred             EEEEeCCCccccCCccccccccCcEEEEEEeCCC---hhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCC-cccC----
Q 029854           29 FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVK----  100 (186)
Q Consensus        29 l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~---~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~----  100 (186)
                      +.||||||++.|..++...++.+|++++|+|+++   +.+++.+.    .+..  .+.|+++|+||+|+.. ....    
T Consensus       528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~----~lk~--~~iPiIVViNKiDL~~~~~~~~~~~  601 (1049)
T PRK14845        528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN----ILRQ--YKTPFVVAANKIDLIPGWNISEDEP  601 (1049)
T ss_pred             EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH----HHHH--cCCCEEEEEECCCCccccccccchh
Confidence            8999999999998888888899999999999987   44544432    2222  2689999999999953 2110    


Q ss_pred             ---------hHHH-HH----------HHHc---------------CCcEEEeccCCCCCchHHHHHHHHH
Q 029854          101 ---------AKQV-TF----------HRKK---------------NLQYYEISAKSNYNFEKPFLYLARK  135 (186)
Q Consensus       101 ---------~~~~-~~----------~~~~---------------~~~~~~~Sa~~~~gi~~l~~~l~~~  135 (186)
                               +... ++          ..+.               .++++.+||++|.||.+++..+...
T Consensus       602 ~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l  671 (1049)
T PRK14845        602 FLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL  671 (1049)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence                     0000 11          0111               2579999999999999999877643

>cd04167 Snu114p Snu114p subfamily

Probab=99.25  E-value=4.9e-11  Score=90.57  Aligned_cols=70  Identities=24%  Similarity=0.245  Sum_probs=56.6

Q ss_pred             CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 029854           23 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK   95 (186)
Q Consensus        23 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~   95 (186)
                      ++..+.+.+|||||+..|...+..++..+|++|+|+|+++..++.. ..|+.....  .+.|+++|+||+|+.
T Consensus        67 ~~~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~--~~~p~iiviNK~D~~  136 (213)
T cd04167          67 KGKSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL--EGLPIVLVINKIDRL  136 (213)
T ss_pred             CCCEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECcccC
Confidence            4567999999999999998888889999999999999988766543 344444433  358999999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.23  E-value=7.5e-11  Score=98.21  Aligned_cols=122  Identities=16%  Similarity=0.134  Sum_probs=91.3

Q ss_pred             cccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCEE
Q 029854            8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIV   86 (186)
Q Consensus         8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~~~p~i   86 (186)
                      .-|.++-.+..++. +|  -.++|.||||+..|..|+..-.+-+|+++||+.+.|.-    ..+..+.|.+.. .+.|+|
T Consensus       185 GITQhIGAF~V~~p-~G--~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGV----mpQT~EaIkhAk~A~VpiV  257 (683)
T KOG1145|consen  185 GITQHIGAFTVTLP-SG--KSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGV----MPQTLEAIKHAKSANVPIV  257 (683)
T ss_pred             CccceeceEEEecC-CC--CEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCc----cHhHHHHHHHHHhcCCCEE
Confidence            34666666666665 55  46677899999999999999999999999999988741    234455566654 589999


Q ss_pred             EEEeCCCCCCcccChHHHHHH------HHcC--CcEEEeccCCCCCchHHHHHHHHHH
Q 029854           87 LCGNKVDVKNRQVKAKQVTFH------RKKN--LQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        87 lv~nK~Dl~~~~~~~~~~~~~------~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      ++.||||.++..+..-..++.      ..+|  .+++.+||++|.|++.|.++++-..
T Consensus       258 vAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~A  315 (683)
T KOG1145|consen  258 VAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLA  315 (683)
T ss_pred             EEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHH
Confidence            999999988765433333333      2222  5799999999999999888877544

>cd00066 G-alpha G protein alpha subunit

Probab=99.22  E-value=5.7e-11  Score=95.44  Aligned_cols=129  Identities=14%  Similarity=0.143  Sum_probs=88.8

Q ss_pred             ccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCCh----------hhHHhHHHHHHHH
Q 029854            7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR----------LTYKNVPTWHRDL   76 (186)
Q Consensus         7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~----------~s~~~i~~~~~~~   76 (186)
                      ..||+|+......+    ..+.+.+||++||...+..|..++.+++++|+|+|+++.          ..+.+....++.+
T Consensus       145 r~~T~Gi~~~~f~~----~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i  220 (317)
T cd00066         145 RVKTTGIVETKFTI----KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSI  220 (317)
T ss_pred             ecccCCeeEEEEEe----cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHH
Confidence            35677766554443    568899999999999999999999999999999999974          3344444444444


Q ss_pred             Hhh--cCCCCEEEEEeCCCCCCcc-----------------cC-hHHH-----HHHHHc-----CCcEEEeccCCCCCch
Q 029854           77 CRV--CENIPIVLCGNKVDVKNRQ-----------------VK-AKQV-----TFHRKK-----NLQYYEISAKSNYNFE  126 (186)
Q Consensus        77 ~~~--~~~~p~ilv~nK~Dl~~~~-----------------~~-~~~~-----~~~~~~-----~~~~~~~Sa~~~~gi~  126 (186)
                      ...  ..+.|++|++||+|+-...                 .. ....     ++....     .+-...++|.+..++.
T Consensus       221 ~~~~~~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~  300 (317)
T cd00066         221 CNSRWFANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIR  300 (317)
T ss_pred             HhCccccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHH
Confidence            432  2579999999999963211                 01 1111     122111     1335678888888999


Q ss_pred             HHHHHHHHHHhCC
Q 029854          127 KPFLYLARKLAGD  139 (186)
Q Consensus       127 ~l~~~l~~~i~~~  139 (186)
                      .+|..+.+.|...
T Consensus       301 ~vf~~v~~~i~~~  313 (317)
T cd00066         301 FVFDAVKDIILQN  313 (317)
T ss_pred             HHHHHHHHHHHHH
Confidence            9998888877654

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>PRK13351 elongation factor G; Reviewed

Probab=99.21  E-value=9.6e-11  Score=103.11  Aligned_cols=84  Identities=23%  Similarity=0.270  Sum_probs=64.9

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCE
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI   85 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~   85 (186)
                      ++.+|+...+.....    ..+.+.||||||+.+|...+..+++.+|++|+|+|+++..+......|. .+..  .+.|+
T Consensus        56 ~r~~ti~~~~~~~~~----~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~-~~~~--~~~p~  128 (687)
T PRK13351         56 ERGITIESAATSCDW----DNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWR-QADR--YGIPR  128 (687)
T ss_pred             hcCCCcccceEEEEE----CCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHh--cCCCE
Confidence            456677666654333    4678999999999999888899999999999999999877666544443 3333  37899


Q ss_pred             EEEEeCCCCCC
Q 029854           86 VLCGNKVDVKN   96 (186)
Q Consensus        86 ilv~nK~Dl~~   96 (186)
                      ++++||+|+..
T Consensus       129 iiviNK~D~~~  139 (687)
T PRK13351        129 LIFINKMDRVG  139 (687)
T ss_pred             EEEEECCCCCC
Confidence            99999999864

>smart00275 G_alpha G protein alpha subunit

Probab=99.20  E-value=7e-11  Score=95.76  Aligned_cols=130  Identities=15%  Similarity=0.144  Sum_probs=90.9

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCCh----------hhHHhHHHHHHH
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR----------LTYKNVPTWHRD   75 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~----------~s~~~i~~~~~~   75 (186)
                      ...||+|+......+    ..+.+.+||.+|+...+..|..++.+++++|||+|+++.          ..+.+....++.
T Consensus       167 ~r~~T~Gi~~~~f~~----~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~  242 (342)
T smart00275      167 SRVPTTGIQETAFIV----KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFES  242 (342)
T ss_pred             eeCCccceEEEEEEE----CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHH
Confidence            357888987765444    456789999999999999999999999999999999974          234444445555


Q ss_pred             HHhh--cCCCCEEEEEeCCCCCCcc----------------cC-hHHH-----HHHHHc------CCcEEEeccCCCCCc
Q 029854           76 LCRV--CENIPIVLCGNKVDVKNRQ----------------VK-AKQV-----TFHRKK------NLQYYEISAKSNYNF  125 (186)
Q Consensus        76 ~~~~--~~~~p~ilv~nK~Dl~~~~----------------~~-~~~~-----~~~~~~------~~~~~~~Sa~~~~gi  125 (186)
                      +.+.  ..+.|++|++||.|+-...                .. ....     ++....      .+-++.+||.+-.++
T Consensus       243 l~~~~~~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~  322 (342)
T smart00275      243 ICNSRWFANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNI  322 (342)
T ss_pred             HHcCccccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHH
Confidence            5443  2679999999999974211                01 1111     222211      133567888888899


Q ss_pred             hHHHHHHHHHHhCC
Q 029854          126 EKPFLYLARKLAGD  139 (186)
Q Consensus       126 ~~l~~~l~~~i~~~  139 (186)
                      ..+|..+...+.+.
T Consensus       323 ~~v~~~v~~~I~~~  336 (342)
T smart00275      323 RVVFDAVKDIILQR  336 (342)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99998887777653

Subunit of G proteins that contains the guanine nucleotide binding site

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.20  E-value=1.5e-10  Score=83.45  Aligned_cols=124  Identities=18%  Similarity=0.160  Sum_probs=79.3

Q ss_pred             ccccccceEEEEEEEEEECCeEEEEEEEeCCCccc----------cCCccccccc---cCcEEEEEEeCCChhhH--HhH
Q 029854            5 VWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------FGGLRDGYYI---HGQCAIIMFDVTARLTY--KNV   69 (186)
Q Consensus         5 ~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~~~~~~~---~ad~vilv~D~~~~~s~--~~i   69 (186)
                      ..+.+|.|.......+..++   .+.+|||+|...          +..+...++.   .++++++++|.+...+.  ..+
T Consensus        26 ~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~  102 (170)
T cd01876          26 ARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEM  102 (170)
T ss_pred             eeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHH
Confidence            34556666665554444443   889999999533          3333444444   45789999999865322  223


Q ss_pred             HHHHHHHHhhcCCCCEEEEEeCCCCCCcccChH----HHHHHH--HcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029854           70 PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK----QVTFHR--KKNLQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        70 ~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~----~~~~~~--~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      ..|+...     ..|+++++||+|+........    .....+  ....+++++||+++.|+.++++.|.+.+
T Consensus       103 ~~~l~~~-----~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~~  170 (170)
T cd01876         103 LDWLEEL-----GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKWL  170 (170)
T ss_pred             HHHHHHc-----CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHhC
Confidence            4454432     589999999999853221111    112222  2345799999999999999999998753

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.19  E-value=2.4e-10  Score=88.09  Aligned_cols=106  Identities=16%  Similarity=0.072  Sum_probs=71.2

Q ss_pred             EEEEEEEeCCCccccCC-------ccccccccCcEEEEEEeCCChh-hHHhHHHHHH-----------------------
Q 029854           26 KIRFYCWDTAGQEKFGG-------LRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHR-----------------------   74 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~-------~~~~~~~~ad~vilv~D~~~~~-s~~~i~~~~~-----------------------   74 (186)
                      ...+++|||||+.....       ....+++++|++++|+|++++. ..+.+...++                       
T Consensus        46 ~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi  125 (233)
T cd01896          46 GAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGI  125 (233)
T ss_pred             CeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCE
Confidence            46789999999854431       2235688999999999998765 2222222221                       


Q ss_pred             -----------------HHHh-h-------------------------cCCCCEEEEEeCCCCCCcccChHHHHHHHHcC
Q 029854           75 -----------------DLCR-V-------------------------CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN  111 (186)
Q Consensus        75 -----------------~~~~-~-------------------------~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~  111 (186)
                                       .+.+ +                         ....|+++|+||+|+.+.   .+...++.  .
T Consensus       126 ~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~---~~~~~~~~--~  200 (233)
T cd01896         126 NITSTVPLTKLDEKTIKAILREYKIHNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISI---EELDLLAR--Q  200 (233)
T ss_pred             EEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCH---HHHHHHhc--C
Confidence                             1110 0                         112699999999998532   12223443  3


Q ss_pred             CcEEEeccCCCCCchHHHHHHHHHH
Q 029854          112 LQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus       112 ~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      .+++++||++|.|++++|+.+.+.+
T Consensus       201 ~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         201 PNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999998866

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.18  E-value=1.1e-10  Score=90.17  Aligned_cols=95  Identities=16%  Similarity=0.116  Sum_probs=66.8

Q ss_pred             EEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCC
Q 029854           15 VHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV   94 (186)
Q Consensus        15 ~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl   94 (186)
                      +......+.....++.+|||||+..|...+..+++.+|++++|+|+++..... ...|+..+..  .+.|+++++||+|+
T Consensus        52 i~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~-~~~~~~~~~~--~~~P~iivvNK~D~  128 (237)
T cd04168          52 IFSAVASFQWEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQ-TRILWRLLRK--LNIPTIIFVNKIDR  128 (237)
T ss_pred             eeeeeEEEEECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCHH-HHHHHHHHHH--cCCCEEEEEECccc
Confidence            33333334446678999999999999888889999999999999999865432 3455555544  37899999999999


Q ss_pred             CCcccChHHHHHHHHcCC
Q 029854           95 KNRQVKAKQVTFHRKKNL  112 (186)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~  112 (186)
                      ...........+...++.
T Consensus       129 ~~a~~~~~~~~i~~~~~~  146 (237)
T cd04168         129 AGADLEKVYQEIKEKLSS  146 (237)
T ss_pred             cCCCHHHHHHHHHHHHCC
Confidence            754332223344445554

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.18  E-value=1.9e-10  Score=98.07  Aligned_cols=82  Identities=17%  Similarity=0.131  Sum_probs=59.2

Q ss_pred             eEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeC
Q 029854           12 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNK   91 (186)
Q Consensus        12 g~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK   91 (186)
                      |+.+......++...+.+.+|||||+..|......+++.+|++|+|+|+++.... ....++.....  .+.|+++++||
T Consensus        64 giSi~~~~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~--~~iPiiv~iNK  140 (526)
T PRK00741         64 GISVTSSVMQFPYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL--RDTPIFTFINK  140 (526)
T ss_pred             CCceeeeeEEEEECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh--cCCCEEEEEEC
Confidence            3344444444444567889999999999988777889999999999999875322 22344433333  47999999999


Q ss_pred             CCCCC
Q 029854           92 VDVKN   96 (186)
Q Consensus        92 ~Dl~~   96 (186)
                      +|+..
T Consensus       141 ~D~~~  145 (526)
T PRK00741        141 LDRDG  145 (526)
T ss_pred             Ccccc
Confidence            99753

>cd04169 RF3 RF3 subfamily

Probab=99.17  E-value=1.9e-10  Score=90.32  Aligned_cols=96  Identities=15%  Similarity=0.110  Sum_probs=64.9

Q ss_pred             EEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcc
Q 029854           19 DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ   98 (186)
Q Consensus        19 ~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~   98 (186)
                      ...+....+.+.||||||+.+|.......++.+|++|+|+|+++..... ...+++....  .+.|+++++||+|+.+..
T Consensus        63 ~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~--~~~P~iivvNK~D~~~a~  139 (267)
T cd04169          63 VMQFEYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRL--RGIPIITFINKLDREGRD  139 (267)
T ss_pred             EEEEeeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHh--cCCCEEEEEECCccCCCC
Confidence            3344456788999999999998877777889999999999998753322 2334433332  378999999999987654


Q ss_pred             cChHHHHHHHHcCCcEEEe
Q 029854           99 VKAKQVTFHRKKNLQYYEI  117 (186)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~  117 (186)
                      .......+...++.+.+.+
T Consensus       140 ~~~~~~~l~~~l~~~~~~~  158 (267)
T cd04169         140 PLELLDEIEEELGIDCTPL  158 (267)
T ss_pred             HHHHHHHHHHHHCCCceeE
Confidence            3222224444556554443

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.15  E-value=2.4e-10  Score=87.49  Aligned_cols=105  Identities=13%  Similarity=0.125  Sum_probs=69.5

Q ss_pred             EEEEEEEeCCCccccCCcccccc--ccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHH
Q 029854           26 KIRFYCWDTAGQEKFGGLRDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ  103 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~~~~~~~--~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~  103 (186)
                      ...+.|.||||+++|.......+  ..+|++++|+|+.....-. ...++..+..  .+.|+++|.||+|+.+.......
T Consensus        83 ~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~-d~~~l~~l~~--~~ip~ivvvNK~D~~~~~~~~~~  159 (224)
T cd04165          83 SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM-TKEHLGLALA--LNIPVFVVVTKIDLAPANILQET  159 (224)
T ss_pred             CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH-HHHHHHHHHH--cCCCEEEEEECccccCHHHHHHH
Confidence            45677889999998855433334  3689999999998654322 2334444433  36899999999998643222221


Q ss_pred             H-HHHHHc-----------------------------CCcEEEeccCCCCCchHHHHHHH
Q 029854          104 V-TFHRKK-----------------------------NLQYYEISAKSNYNFEKPFLYLA  133 (186)
Q Consensus       104 ~-~~~~~~-----------------------------~~~~~~~Sa~~~~gi~~l~~~l~  133 (186)
                      . ++...+                             ..+++.+||.+|.|++++...|.
T Consensus       160 ~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         160 LKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             HHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence            1 111111                             23899999999999998887764

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.15  E-value=1.2e-10  Score=88.94  Aligned_cols=69  Identities=19%  Similarity=0.171  Sum_probs=55.5

Q ss_pred             CeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 029854           24 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK   95 (186)
Q Consensus        24 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~   95 (186)
                      +..+.+.||||||+..|......+++.||++|+|+|+++..+.+.. ..+.....  .+.|+++++||+|+.
T Consensus        70 ~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~~--~~~p~ilviNKiD~~  138 (222)
T cd01885          70 GNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQALK--ERVKPVLVINKIDRL  138 (222)
T ss_pred             CCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHHH--cCCCEEEEEECCCcc
Confidence            5589999999999999999999999999999999999987655542 22222222  368999999999985

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.15  E-value=4.5e-10  Score=84.27  Aligned_cols=101  Identities=15%  Similarity=0.038  Sum_probs=67.2

Q ss_pred             CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC-EEEEEeCCCCCCcc-cC
Q 029854           23 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQ-VK  100 (186)
Q Consensus        23 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~-~~  100 (186)
                      .....++.|+||||...|.......+..+|++++|+|++....-+ ....+..+..  .+.| +|++.||+|+.... ..
T Consensus        61 ~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~--~~~~~iIvviNK~D~~~~~~~~  137 (195)
T cd01884          61 ETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQ--VGVPYIVVFLNKADMVDDEELL  137 (195)
T ss_pred             cCCCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHH--cCCCcEEEEEeCCCCCCcHHHH
Confidence            334557788899999888776777788999999999998753222 2223333333  2566 78999999986321 11


Q ss_pred             ----hHHHHHHHHc-----CCcEEEeccCCCCCch
Q 029854          101 ----AKQVTFHRKK-----NLQYYEISAKSNYNFE  126 (186)
Q Consensus       101 ----~~~~~~~~~~-----~~~~~~~Sa~~~~gi~  126 (186)
                          .+...+....     +++++.+||++|.|+.
T Consensus       138 ~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~  172 (195)
T cd01884         138 ELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGD  172 (195)
T ss_pred             HHHHHHHHHHHHHhcccccCCeEEEeeCccccCCC
Confidence                1222333333     3679999999999864

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.14  E-value=2.4e-10  Score=95.73  Aligned_cols=102  Identities=16%  Similarity=0.218  Sum_probs=71.4

Q ss_pred             CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHH-------hHHHHHHHHHhhcCCC-CEEEEEeCCCC
Q 029854           23 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK-------NVPTWHRDLCRVCENI-PIVLCGNKVDV   94 (186)
Q Consensus        23 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~-------~i~~~~~~~~~~~~~~-p~ilv~nK~Dl   94 (186)
                      ......+.|+||||+++|.......++.||++|+|+|+++ .+|+       .....+..+..  .++ ++|+++||+|+
T Consensus        81 ~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~~~--~gi~~iIV~vNKmD~  157 (447)
T PLN00043         81 ETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLAFT--LGVKQMICCCNKMDA  157 (447)
T ss_pred             cCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHHHH--cCCCcEEEEEEcccC
Confidence            4456678889999999998888888999999999999997 3343       22222222211  356 47889999998


Q ss_pred             CCcc--------cChHHHHHHHHcC-----CcEEEeccCCCCCchH
Q 029854           95 KNRQ--------VKAKQVTFHRKKN-----LQYYEISAKSNYNFEK  127 (186)
Q Consensus        95 ~~~~--------~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~  127 (186)
                      ....        +..+...+++..+     ++++++||++|.|+.+
T Consensus       158 ~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        158 TTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             CchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            6211        1223345555555     5799999999999854

>PRK00098 GTPase RsgA; Reviewed

Probab=99.14  E-value=4.8e-10  Score=89.39  Aligned_cols=86  Identities=16%  Similarity=0.147  Sum_probs=65.1

Q ss_pred             cccCcEEEEEEeCCChhhHHh-HHHHHHHHHhhcCCCCEEEEEeCCCCCCc-ccChHHHHHHHHcCCcEEEeccCCCCCc
Q 029854           48 YIHGQCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNF  125 (186)
Q Consensus        48 ~~~ad~vilv~D~~~~~s~~~-i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  125 (186)
                      +.++|++++|+|++++.++.. +..|+..+..  .+.|+++|+||+|+.+. .............+++++.+||++|.|+
T Consensus        78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi  155 (298)
T PRK00098         78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEGL  155 (298)
T ss_pred             eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccH
Confidence            489999999999988765444 4678777654  47899999999999632 2112233445566789999999999999


Q ss_pred             hHHHHHHHHH
Q 029854          126 EKPFLYLARK  135 (186)
Q Consensus       126 ~~l~~~l~~~  135 (186)
                      ++++..+...
T Consensus       156 ~~L~~~l~gk  165 (298)
T PRK00098        156 DELKPLLAGK  165 (298)
T ss_pred             HHHHhhccCc
Confidence            9999887543

>PRK12740 elongation factor G; Reviewed

Probab=99.13  E-value=3e-10  Score=99.74  Aligned_cols=83  Identities=16%  Similarity=0.218  Sum_probs=60.6

Q ss_pred             ccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEE
Q 029854            7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV   86 (186)
Q Consensus         7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~i   86 (186)
                      ...|++..+.....    ..+.+.||||||+..|...+..+++.+|++|+|+|++.........-| ..+..  .+.|++
T Consensus        44 rgiTi~~~~~~~~~----~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~--~~~p~i  116 (668)
T PRK12740         44 RGISITSAATTCEW----KGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK--YGVPRI  116 (668)
T ss_pred             cCCCeeeceEEEEE----CCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH--cCCCEE
Confidence            44555544443333    457889999999988877788889999999999999987665543333 23332  378999


Q ss_pred             EEEeCCCCCC
Q 029854           87 LCGNKVDVKN   96 (186)
Q Consensus        87 lv~nK~Dl~~   96 (186)
                      +|+||+|+..
T Consensus       117 iv~NK~D~~~  126 (668)
T PRK12740        117 IFVNKMDRAG  126 (668)
T ss_pred             EEEECCCCCC
Confidence            9999999863

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.12  E-value=3.9e-10  Score=93.27  Aligned_cols=100  Identities=11%  Similarity=-0.015  Sum_probs=65.1

Q ss_pred             EECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEE-EEEeCCCCCCccc
Q 029854           21 FTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQV   99 (186)
Q Consensus        21 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~   99 (186)
                      .++....++.||||||+++|.......+..+|++++|+|++.....+. ...+..+..  .+.|.+ +++||+|+.+...
T Consensus        69 ~~~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~--~gi~~iIvvvNK~Dl~~~~~  145 (394)
T TIGR00485        69 EYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQ--VGVPYIVVFLNKCDMVDDEE  145 (394)
T ss_pred             EEcCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH--cCCCEEEEEEEecccCCHHH
Confidence            334455678899999999886555555677899999999987432221 122222322  256755 6899999975321


Q ss_pred             -C----hHHHHHHHHcC-----CcEEEeccCCCC
Q 029854          100 -K----AKQVTFHRKKN-----LQYYEISAKSNY  123 (186)
Q Consensus       100 -~----~~~~~~~~~~~-----~~~~~~Sa~~~~  123 (186)
                       .    .+...++..++     ++++.+||++|.
T Consensus       146 ~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       146 LLELVEMEVRELLSEYDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             HHHHHHHHHHHHHHhcCCCccCccEEECcccccc
Confidence             1    12334555554     689999999885

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=99.11  E-value=1e-09  Score=87.01  Aligned_cols=87  Identities=11%  Similarity=0.070  Sum_probs=68.3

Q ss_pred             cccccCcEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCC
Q 029854           46 GYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYN  124 (186)
Q Consensus        46 ~~~~~ad~vilv~D~~~~~-s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  124 (186)
                      ..++++|++++|+|++++. ++..+.+|+..+..  .+.|+++|+||+|+.+.........+....+.+++.+||++|.|
T Consensus        74 ~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~g  151 (287)
T cd01854          74 VIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA--AGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEG  151 (287)
T ss_pred             eEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH--cCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCcc
Confidence            3488999999999999887 88888889887765  37899999999999654211112233445678999999999999


Q ss_pred             chHHHHHHHH
Q 029854          125 FEKPFLYLAR  134 (186)
Q Consensus       125 i~~l~~~l~~  134 (186)
                      +++++..+..
T Consensus       152 i~~L~~~L~~  161 (287)
T cd01854         152 LDELREYLKG  161 (287)
T ss_pred             HHHHHhhhcc
Confidence            9999888764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK12736 elongation factor Tu; Reviewed

Probab=99.11  E-value=5.8e-10  Score=92.21  Aligned_cols=113  Identities=12%  Similarity=0.035  Sum_probs=72.9

Q ss_pred             ECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC-EEEEEeCCCCCCcc-c
Q 029854           22 TNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQ-V   99 (186)
Q Consensus        22 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~-~   99 (186)
                      +.....++.||||||+++|.......+..+|++++|+|++....-+. ...+..+..  .+.| +|+++||+|+.+.. .
T Consensus        70 ~~~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~--~g~~~~IvviNK~D~~~~~~~  146 (394)
T PRK12736         70 YETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQ--VGVPYLVVFLNKVDLVDDEEL  146 (394)
T ss_pred             ecCCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH--cCCCEEEEEEEecCCcchHHH
Confidence            33445677899999999886655555678999999999987422221 222333333  2677 67899999987422 1


Q ss_pred             C----hHHHHHHHHcC-----CcEEEeccCCCC--------CchHHHHHHHHHHh
Q 029854          100 K----AKQVTFHRKKN-----LQYYEISAKSNY--------NFEKPFLYLARKLA  137 (186)
Q Consensus       100 ~----~~~~~~~~~~~-----~~~~~~Sa~~~~--------gi~~l~~~l~~~i~  137 (186)
                      .    .+...+....+     ++++.+||++|.        ++..+++.+...+.
T Consensus       147 ~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        147 LELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             HHHHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence            1    12223333343     579999999983        46677777666554

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.10  E-value=3.3e-10  Score=80.21  Aligned_cols=111  Identities=17%  Similarity=0.187  Sum_probs=73.3

Q ss_pred             ccccccceEEEEEEEEEECCeEEEEEEEeCCCcc----ccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc
Q 029854            5 VWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQE----KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC   80 (186)
Q Consensus         5 ~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~----~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~   80 (186)
                      ..|.-|..+.|..            .++||||..    .|....-....+||.+++|.|++++.+...     ..+....
T Consensus        26 ~~~~KTq~i~~~~------------~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~p-----P~fa~~f   88 (143)
T PF10662_consen   26 IRYKKTQAIEYYD------------NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFP-----PGFASMF   88 (143)
T ss_pred             CCcCccceeEecc------------cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCC-----chhhccc
Confidence            3455565555543            235999942    222222334458999999999998755332     1122222


Q ss_pred             CCCCEEEEEeCCCCCCccc-ChHHHHHHHHcCC-cEEEeccCCCCCchHHHHHHH
Q 029854           81 ENIPIVLCGNKVDVKNRQV-KAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLA  133 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~  133 (186)
                       +.|+|-|+||+|+..... .....++.+..|+ ++|++|+.+|+||+++.+.|-
T Consensus        89 -~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~  142 (143)
T PF10662_consen   89 -NKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE  142 (143)
T ss_pred             -CCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence             589999999999983222 2334466666676 589999999999999998874

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd01855 YqeH YqeH

Probab=99.10  E-value=3.9e-10  Score=84.09  Aligned_cols=96  Identities=17%  Similarity=0.128  Sum_probs=68.0

Q ss_pred             cCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChH-HHHHH-----HHcCC-
Q 029854           40 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFH-----RKKNL-  112 (186)
Q Consensus        40 ~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~-~~~~~-----~~~~~-  112 (186)
                      +..++..+++++|++++|+|+++...     .|...+.....+.|+++|+||+|+........ ...+.     +..+. 
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~   98 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLK   98 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCC
Confidence            46677889999999999999988642     12223322234789999999999975433222 22333     22333 


Q ss_pred             --cEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029854          113 --QYYEISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus       113 --~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                        +++.+||++|.|+++++..+.+.+....
T Consensus        99 ~~~i~~vSA~~~~gi~eL~~~l~~~l~~~~  128 (190)
T cd01855          99 PKDVILISAKKGWGVEELINAIKKLAKKGG  128 (190)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHHhhcCC
Confidence              6899999999999999999998875433

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01859 MJ1464 MJ1464

Probab=99.10  E-value=2.3e-10  Score=82.69  Aligned_cols=95  Identities=12%  Similarity=0.048  Sum_probs=65.8

Q ss_pred             CCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccC
Q 029854           41 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAK  120 (186)
Q Consensus        41 ~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~  120 (186)
                      +.+.+..+++||++|+|+|++++..... ..+...+..  .+.|+++|+||+|+.+.........+....+.+++.+||+
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~   79 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVLE--LGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAK   79 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHHh--CCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEcc
Confidence            3456777889999999999988654332 122222221  3689999999999864321111112333456789999999


Q ss_pred             CCCCchHHHHHHHHHHhC
Q 029854          121 SNYNFEKPFLYLARKLAG  138 (186)
Q Consensus       121 ~~~gi~~l~~~l~~~i~~  138 (186)
                      +|.|++++++.+.+.+..
T Consensus        80 ~~~gi~~L~~~l~~~~~~   97 (156)
T cd01859          80 ERLGTKILRRTIKELAKI   97 (156)
T ss_pred             ccccHHHHHHHHHHHHhh
Confidence            999999999999988764

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK12289 GTPase RsgA; Reviewed

Probab=99.08  E-value=6.3e-10  Score=90.33  Aligned_cols=96  Identities=16%  Similarity=0.134  Sum_probs=71.5

Q ss_pred             ccCCccccccccCcEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEe
Q 029854           39 KFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEI  117 (186)
Q Consensus        39 ~~~~~~~~~~~~ad~vilv~D~~~~~-s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  117 (186)
                      +-..+.+..++++|.+++|+|+.++. ++..+..|+..+..  .+.|++||+||+||................+++++.+
T Consensus        78 R~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~--~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~i  155 (352)
T PRK12289         78 RKTELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES--TGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFI  155 (352)
T ss_pred             cccceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEE
Confidence            34456667799999999999999765 55566778776633  4799999999999964321122223334667899999


Q ss_pred             ccCCCCCchHHHHHHHHHH
Q 029854          118 SAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus       118 Sa~~~~gi~~l~~~l~~~i  136 (186)
                      ||++|.|+++++..+...+
T Consensus       156 SA~tg~GI~eL~~~L~~ki  174 (352)
T PRK12289        156 SVETGIGLEALLEQLRNKI  174 (352)
T ss_pred             EcCCCCCHHHHhhhhccce
Confidence            9999999999999887544

>TIGR00503 prfC peptide chain release factor 3

Probab=99.08  E-value=9.9e-10  Score=93.67  Aligned_cols=82  Identities=15%  Similarity=0.106  Sum_probs=60.4

Q ss_pred             ceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEe
Q 029854           11 IGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGN   90 (186)
Q Consensus        11 ig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~n   90 (186)
                      -|+.+......++...+++.||||||+..|.......++.+|++|+|+|+++...- ....+++....  .+.|+++++|
T Consensus        64 rgisi~~~~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~--~~~PiivviN  140 (527)
T TIGR00503        64 RGISITTSVMQFPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVET-RTRKLMEVTRL--RDTPIFTFMN  140 (527)
T ss_pred             cCCcEEEEEEEEeeCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCH-HHHHHHHHHHh--cCCCEEEEEE
Confidence            35555555555666778999999999998887777789999999999999874211 22344443332  4789999999


Q ss_pred             CCCCC
Q 029854           91 KVDVK   95 (186)
Q Consensus        91 K~Dl~   95 (186)
                      |+|+.
T Consensus       141 KiD~~  145 (527)
T TIGR00503       141 KLDRD  145 (527)
T ss_pred             Ccccc
Confidence            99974

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PRK09866 hypothetical protein; Provisional

Probab=99.07  E-value=8.2e-10  Score=94.47  Aligned_cols=128  Identities=16%  Similarity=0.147  Sum_probs=81.1

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCcccc-----CCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-----GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC   80 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-----~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~   80 (186)
                      ++.|-|.+.+.+.... .....++.|.||||...-     .......+.+||+|+||+|.+...+..+ ....+.+.+..
T Consensus       210 ~~~p~iev~f~hl~g~-l~~~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~  287 (741)
T PRK09866        210 EHIPVIEVEFVHLAGL-ESYPGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG  287 (741)
T ss_pred             hcCceeeeeeeecccc-ccccCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC
Confidence            4566666666654321 123457788899997542     1123347899999999999987544333 12333343332


Q ss_pred             CCCCEEEEEeCCCCCCccc--ChHHHHHHH----HcC---CcEEEeccCCCCCchHHHHHHHHH
Q 029854           81 ENIPIVLCGNKVDVKNRQV--KAKQVTFHR----KKN---LQYYEISAKSNYNFEKPFLYLARK  135 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~~~~--~~~~~~~~~----~~~---~~~~~~Sa~~~~gi~~l~~~l~~~  135 (186)
                      .+.|+++|+||+|+.++..  ......+..    ..+   ..++.+||++|.|+++++..+..+
T Consensus       288 K~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~  351 (741)
T PRK09866        288 QSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN  351 (741)
T ss_pred             CCCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence            2369999999999864222  122223322    112   259999999999999999998863

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.05  E-value=9.7e-10  Score=91.20  Aligned_cols=101  Identities=17%  Similarity=0.162  Sum_probs=66.2

Q ss_pred             eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccC----
Q 029854           25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK----  100 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~----  100 (186)
                      ...++.||||||+++|.......+..+|++|+|+|++....-+....|. .+ ......++++++||+|+.+....    
T Consensus        78 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~-~~-~~~~~~~iivviNK~D~~~~~~~~~~~  155 (406)
T TIGR02034        78 DKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY-IA-SLLGIRHVVLAVNKMDLVDYDEEVFEN  155 (406)
T ss_pred             CCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH-HH-HHcCCCcEEEEEEecccccchHHHHHH
Confidence            3457789999999998665556788999999999998653222211121 11 12123468999999998642211    


Q ss_pred             --hHHHHHHHHcC---CcEEEeccCCCCCchH
Q 029854          101 --AKQVTFHRKKN---LQYYEISAKSNYNFEK  127 (186)
Q Consensus       101 --~~~~~~~~~~~---~~~~~~Sa~~~~gi~~  127 (186)
                        .+...+....+   ++++.+||++|.|+.+
T Consensus       156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence              11122333333   4699999999999986

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PRK12735 elongation factor Tu; Reviewed

Probab=99.05  E-value=1.6e-09  Score=89.64  Aligned_cols=112  Identities=10%  Similarity=-0.013  Sum_probs=71.9

Q ss_pred             ECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEE-EEEeCCCCCCccc-
Q 029854           22 TNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQV-   99 (186)
Q Consensus        22 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~-   99 (186)
                      +.....++.|+||||++.|.......+..+|++++|+|+++...-+ ....+..+..  .+.|.+ +++||+|+.+... 
T Consensus        70 ~~~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~~--~gi~~iivvvNK~Dl~~~~~~  146 (396)
T PRK12735         70 YETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ--VGVPYIVVFLNKCDMVDDEEL  146 (396)
T ss_pred             EcCCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchh-HHHHHHHHHH--cCCCeEEEEEEecCCcchHHH
Confidence            3344557789999999888666666778899999999998743222 1223333332  367855 6799999974221 


Q ss_pred             C----hHHHHHHHHcC-----CcEEEeccCCCC----------CchHHHHHHHHHH
Q 029854          100 K----AKQVTFHRKKN-----LQYYEISAKSNY----------NFEKPFLYLARKL  136 (186)
Q Consensus       100 ~----~~~~~~~~~~~-----~~~~~~Sa~~~~----------gi~~l~~~l~~~i  136 (186)
                      .    .+...+...++     ++++.+||++|.          ++..+++.|...+
T Consensus       147 ~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~  202 (396)
T PRK12735        147 LELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI  202 (396)
T ss_pred             HHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence            1    12223444443     679999999985          4556666665543

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.03  E-value=8.8e-10  Score=92.41  Aligned_cols=109  Identities=14%  Similarity=0.156  Sum_probs=74.3

Q ss_pred             EEEEEEeCCCccccCCccccccccCcEEEEEEeCCCh-hhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChH---
Q 029854           27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR-LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK---  102 (186)
Q Consensus        27 ~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~-~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~---  102 (186)
                      .++.|+||||++.|.......+..+|++++|+|++.. ..-+. ...+. +.....-.|++++.||+|+.+.....+   
T Consensus       117 ~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT-~ehl~-i~~~lgi~~iIVvlNKiDlv~~~~~~~~~~  194 (460)
T PTZ00327        117 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQT-SEHLA-AVEIMKLKHIIILQNKIDLVKEAQAQDQYE  194 (460)
T ss_pred             ceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhh-HHHHH-HHHHcCCCcEEEEEecccccCHHHHHHHHH
Confidence            4678999999999876666667889999999999974 22221 12222 222222356899999999975222112   


Q ss_pred             -HHHHHHH---cCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854          103 -QVTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus       103 -~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                       ...+...   .+.+++.+||++|.|++.|++.|...+.
T Consensus       195 ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp  233 (460)
T PTZ00327        195 EIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP  233 (460)
T ss_pred             HHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence             1222222   2568999999999999999999987554

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.03  E-value=2.6e-10  Score=81.52  Aligned_cols=127  Identities=14%  Similarity=0.229  Sum_probs=95.7

Q ss_pred             ccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CC
Q 029854            5 VWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--EN   82 (186)
Q Consensus         5 ~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~   82 (186)
                      .+|.||.........+    .+++++-+|.+|+..-+..|+.|+..++++++++|+.+.+.|.+.+.-++.+....  .+
T Consensus        46 ~qhvPTlHPTSE~l~I----g~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~  121 (193)
T KOG0077|consen   46 GQHVPTLHPTSEELSI----GGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLAT  121 (193)
T ss_pred             cccCCCcCCChHHhee----cCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhc
Confidence            3688888877776555    67788889999999999999999999999999999999999988776555554432  68


Q ss_pred             CCEEEEEeCCCCCCcccChHHH---HHHHHcC--------------CcEEEeccCCCCCchHHHHHHHHH
Q 029854           83 IPIVLCGNKVDVKNRQVKAKQV---TFHRKKN--------------LQYYEISAKSNYNFEKPFLYLARK  135 (186)
Q Consensus        83 ~p~ilv~nK~Dl~~~~~~~~~~---~~~~~~~--------------~~~~~~Sa~~~~gi~~l~~~l~~~  135 (186)
                      .|+++.+||+|.+.....++..   .+.+..+              +.++-||...+.|--+.|.++...
T Consensus       122 vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  122 VPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQY  191 (193)
T ss_pred             CcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeeeehhhh
Confidence            9999999999998654332211   1111111              247788888888877888777654

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.03  E-value=3.5e-09  Score=87.22  Aligned_cols=122  Identities=16%  Similarity=0.146  Sum_probs=86.5

Q ss_pred             ccceEEEEEEEEEECCeEEEEEEEeCCCccccCCc--------cccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc
Q 029854            9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC   80 (186)
Q Consensus         9 ~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~--------~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~   80 (186)
                      |-.-.|+....+.++|.++++  .||+|.+.....        .+..++.||.+++|+|.+.+.+-.+. ..+.   ...
T Consensus       249 ~GTTRDviee~i~i~G~pv~l--~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~-~~~~---~~~  322 (454)
T COG0486         249 AGTTRDVIEEDINLNGIPVRL--VDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDL-ALIE---LLP  322 (454)
T ss_pred             CCCccceEEEEEEECCEEEEE--EecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhH-HHHH---hcc
Confidence            444467777788888877665  499998765443        34567899999999999986332221 1111   233


Q ss_pred             CCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           81 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      .+.|+++|.||.|+.........   ....+.+++.+||++|.|++.+.+.+...+...
T Consensus       323 ~~~~~i~v~NK~DL~~~~~~~~~---~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         323 KKKPIIVVLNKADLVSKIELESE---KLANGDAIISISAKTGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             cCCCEEEEEechhcccccccchh---hccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence            57999999999999754332221   112245799999999999999999999888765

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.01  E-value=3.3e-09  Score=85.13  Aligned_cols=62  Identities=18%  Similarity=0.267  Sum_probs=44.5

Q ss_pred             CCCEEEEEeCCCCCCcccChHHHHHHHHc-CCcEEEeccCCCCCchHHHH-HHHHHHhCCCCcccc
Q 029854           82 NIPIVLCGNKVDVKNRQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFL-YLARKLAGDPNLHFV  145 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~-~l~~~i~~~~~~~~~  145 (186)
                      ..|+|+++||+|+.......+  .+.... ...++.+||+.+.|+.++.+ .+.+.+.+.+.+...
T Consensus       214 ~KPvI~VlNK~Dl~~~~~~~~--~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f~~~  277 (318)
T cd01899         214 SKPMVIAANKADIPDAENNIS--KLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDFEIT  277 (318)
T ss_pred             CCcEEEEEEHHHccChHHHHH--HHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCceec
Confidence            369999999999753221111  222222 45799999999999999998 699999887765443

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.00  E-value=1.9e-09  Score=82.65  Aligned_cols=127  Identities=17%  Similarity=0.247  Sum_probs=81.6

Q ss_pred             cccceEEEEEEEEEECCeEEEEEEEeCCCccccCC-----ccccccccCcEEEEEEeCCChhh---HHhHHHHHHHHHhh
Q 029854            8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-----LRDGYYIHGQCAIIMFDVTARLT---YKNVPTWHRDLCRV   79 (186)
Q Consensus         8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~-----~~~~~~~~ad~vilv~D~~~~~s---~~~i~~~~~~~~~~   79 (186)
                      .||+.++.....+   ...+.+++||.|||..+..     .+...++++.++|+|+|+.+.+-   +......++.+.++
T Consensus        32 ~~T~~ve~~~v~~---~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~  108 (232)
T PF04670_consen   32 EPTIDVEKSHVRF---LSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQY  108 (232)
T ss_dssp             ----SEEEEEEEC---TTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHH
T ss_pred             CCcCCceEEEEec---CCCcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHh
Confidence            3777766554332   3667999999999976533     46778899999999999985442   33344566667777


Q ss_pred             cCCCCEEEEEeCCCCCCcccC--------hHHHHHHHHcC---CcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           80 CENIPIVLCGNKVDVKNRQVK--------AKQVTFHRKKN---LQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        80 ~~~~p~ilv~nK~Dl~~~~~~--------~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      .++..+.|...|+|+......        +.....+...+   +.++.+|.-+ ..+-+++..++..+.-
T Consensus       109 sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq~LiP  177 (232)
T PF04670_consen  109 SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIWD-ESLYEAWSKIVQKLIP  177 (232)
T ss_dssp             STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTS-THHHHHHHHHHHTTST
T ss_pred             CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccCcC-cHHHHHHHHHHHHHcc
Confidence            799999999999998642211        11223334444   6688888876 5888888888887753

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.00  E-value=1.1e-09  Score=92.55  Aligned_cols=102  Identities=18%  Similarity=0.187  Sum_probs=65.5

Q ss_pred             eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCccc--ChH
Q 029854           25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KAK  102 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--~~~  102 (186)
                      ...++.||||||++.|.......++.+|++|+|+|++....-+....|.  +.......|+++++||+|+.+...  ..+
T Consensus       105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~--l~~~lg~~~iIvvvNKiD~~~~~~~~~~~  182 (474)
T PRK05124        105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF--IATLLGIKHLVVAVNKMDLVDYSEEVFER  182 (474)
T ss_pred             CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH--HHHHhCCCceEEEEEeeccccchhHHHHH
Confidence            4457789999999888655555578999999999998653211111111  111112357899999999874221  111


Q ss_pred             H----HHHHHHc----CCcEEEeccCCCCCchHH
Q 029854          103 Q----VTFHRKK----NLQYYEISAKSNYNFEKP  128 (186)
Q Consensus       103 ~----~~~~~~~----~~~~~~~Sa~~~~gi~~l  128 (186)
                      .    ..+....    ..+++.+||++|.|+.++
T Consensus       183 i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        183 IREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            1    1222332    367999999999999865

>PRK13768 GTPase; Provisional

Probab=98.97  E-value=2.2e-09  Score=83.69  Aligned_cols=111  Identities=14%  Similarity=0.158  Sum_probs=72.9

Q ss_pred             EEEEEeCCCcccc---CCcccccccc-----CcEEEEEEeCCChhhHHhH--HHHHHHHHhhcCCCCEEEEEeCCCCCCc
Q 029854           28 RFYCWDTAGQEKF---GGLRDGYYIH-----GQCAIIMFDVTARLTYKNV--PTWHRDLCRVCENIPIVLCGNKVDVKNR   97 (186)
Q Consensus        28 ~l~l~Dt~G~~~~---~~~~~~~~~~-----ad~vilv~D~~~~~s~~~i--~~~~~~~~~~~~~~p~ilv~nK~Dl~~~   97 (186)
                      .+.+|||||+...   +..+..+++.     ++++++|+|++...+..+.  ..|+........+.|+++|+||+|+.+.
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~  177 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE  177 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence            5779999998663   3344333333     8999999999764433222  2333333322347999999999998753


Q ss_pred             ccChHHHH----------------------------HHHHcC--CcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           98 QVKAKQVT----------------------------FHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        98 ~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      ........                            ..+..+  .+++.+|++++.|++++++++.+.+..
T Consensus       178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~  248 (253)
T PRK13768        178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCG  248 (253)
T ss_pred             hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence            22211111                            112223  578999999999999999999888743

>COG1160 Predicted GTPases [General function prediction only]

Probab=98.97  E-value=2.3e-08  Score=82.24  Aligned_cols=121  Identities=17%  Similarity=0.149  Sum_probs=82.0

Q ss_pred             EEEEEEEEEECCeEEEEEEEeCCCccccCCcc-----------ccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC
Q 029854           13 VEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR-----------DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE   81 (186)
Q Consensus        13 ~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~-----------~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~   81 (186)
                      .|.....+.++++++.+  +||+|.++-....           -..+..|++|++|+|++.+.+-++. +....+.+  .
T Consensus       214 RD~I~~~~e~~~~~~~l--iDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~~--~  288 (444)
T COG1160         214 RDSIDIEFERDGRKYVL--IDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDL-RIAGLIEE--A  288 (444)
T ss_pred             ccceeeeEEECCeEEEE--EECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHH-HHHHHHHH--c
Confidence            45566677777886665  5999976533322           2345689999999999998765542 22333333  4


Q ss_pred             CCCEEEEEeCCCCCCc--ccChHHH-HHHHHc----CCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           82 NIPIVLCGNKVDVKNR--QVKAKQV-TFHRKK----NLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~--~~~~~~~-~~~~~~----~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      +.+++||.||+|+.+.  ....+.. ++-..+    ..+++.+||++|.|+..+|+.+......
T Consensus       289 g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~  352 (444)
T COG1160         289 GRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYEC  352 (444)
T ss_pred             CCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHH
Confidence            7899999999998754  1112221 222222    3589999999999999999998876643

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=98.96  E-value=2.2e-09  Score=90.10  Aligned_cols=116  Identities=15%  Similarity=0.183  Sum_probs=92.2

Q ss_pred             eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhc---CCCCEEEEEeCCCCCCcccC
Q 029854           25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVC---ENIPIVLCGNKVDVKNRQVK  100 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~  100 (186)
                      ..+-..|.||+....-+.....-++.|++++++|+.+++.+.+.+. .|+..+++..   .++|+|+||||+|.......
T Consensus        54 e~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~  133 (625)
T KOG1707|consen   54 ENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN  133 (625)
T ss_pred             CcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc
Confidence            4455778899866555555577789999999999999999999985 8999999987   68999999999999753222


Q ss_pred             ---hHHHHHHHHcC-C-cEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029854          101 ---AKQVTFHRKKN-L-QYYEISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus       101 ---~~~~~~~~~~~-~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                         .+...++..+. + .+++|||++-.++.++|...-+.+..-.
T Consensus       134 s~e~~~~pim~~f~EiEtciecSA~~~~n~~e~fYyaqKaVihPt  178 (625)
T KOG1707|consen  134 SDEVNTLPIMIAFAEIETCIECSALTLANVSELFYYAQKAVIHPT  178 (625)
T ss_pred             chhHHHHHHHHHhHHHHHHHhhhhhhhhhhHhhhhhhhheeeccC
Confidence               22344555543 3 4999999999999999999998887654

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=98.94  E-value=8.6e-09  Score=84.74  Aligned_cols=126  Identities=13%  Similarity=0.159  Sum_probs=92.6

Q ss_pred             ceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEe
Q 029854           11 IGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGN   90 (186)
Q Consensus        11 ig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~n   90 (186)
                      =|+.+..+...++-+.+++.|.||||+..|..-....++.+|+|++++|+....-- +.+..+++....  +.+-|+|+|
T Consensus        52 RGITILaKnTav~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMP-QTrFVlkKAl~~--gL~PIVVvN  128 (603)
T COG1217          52 RGITILAKNTAVNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMP-QTRFVLKKALAL--GLKPIVVIN  128 (603)
T ss_pred             cCcEEEeccceeecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCC-chhhhHHHHHHc--CCCcEEEEe
Confidence            36677778887877778999999999999999999999999999999999875321 223334444433  677888899


Q ss_pred             CCCCCCcccC---hHHHHHHH-------HcCCcEEEeccCCCC----------CchHHHHHHHHHHhCC
Q 029854           91 KVDVKNRQVK---AKQVTFHR-------KKNLQYYEISAKSNY----------NFEKPFLYLARKLAGD  139 (186)
Q Consensus        91 K~Dl~~~~~~---~~~~~~~~-------~~~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~~~  139 (186)
                      |+|.+.....   .+...+.-       .+.+|++..|++.|.          ++.-+|+.+++++..-
T Consensus       129 KiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P  197 (603)
T COG1217         129 KIDRPDARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAP  197 (603)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCC
Confidence            9999864432   22233322       335789999999884          5777888888887543

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=98.94  E-value=7.1e-09  Score=82.60  Aligned_cols=107  Identities=22%  Similarity=0.242  Sum_probs=75.0

Q ss_pred             EEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH--HHHHHHHhhcCCCCEEEEEeC
Q 029854           14 EVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP--TWHRDLCRVCENIPIVLCGNK   91 (186)
Q Consensus        14 ~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~--~~~~~~~~~~~~~p~ilv~nK   91 (186)
                      |+-.+-|..  .+-++.+-||||++.|....-.-.+.||++|+++|+...-. ++.+  .++..+.   .-..+++..||
T Consensus        75 DVAYRyFsT--~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl-~QTrRHs~I~sLL---GIrhvvvAVNK  148 (431)
T COG2895          75 DVAYRYFST--EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVL-EQTRRHSFIASLL---GIRHVVVAVNK  148 (431)
T ss_pred             EEEeeeccc--ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhH-HHhHHHHHHHHHh---CCcEEEEEEee
Confidence            444334433  44456666999999998887888899999999999965321 2211  2333333   34679999999


Q ss_pred             CCCCC------cccChHHHHHHHHcCC---cEEEeccCCCCCch
Q 029854           92 VDVKN------RQVKAKQVTFHRKKNL---QYYEISAKSNYNFE  126 (186)
Q Consensus        92 ~Dl~~------~~~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~  126 (186)
                      +||.+      ..+..+...|+..+++   .++++||..|.||-
T Consensus       149 mDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         149 MDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             ecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence            99986      2233445678888875   59999999999864

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.94  E-value=2.4e-09  Score=87.52  Aligned_cols=94  Identities=17%  Similarity=0.208  Sum_probs=71.9

Q ss_pred             ccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChH-HH----HHHHHcC
Q 029854           37 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QV----TFHRKKN  111 (186)
Q Consensus        37 ~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~-~~----~~~~~~~  111 (186)
                      .+.|..+...++++++++++|+|+.+..     ..|...+.+...+.|+++|+||+|+.++....+ ..    ++++..+
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g  124 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELG  124 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcC
Confidence            4577788888899999999999997753     246666666556789999999999976443322 22    2355566


Q ss_pred             C---cEEEeccCCCCCchHHHHHHHHH
Q 029854          112 L---QYYEISAKSNYNFEKPFLYLARK  135 (186)
Q Consensus       112 ~---~~~~~Sa~~~~gi~~l~~~l~~~  135 (186)
                      +   .++.+||++|.|+++++..+.+.
T Consensus       125 ~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       125 LKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             CCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            6   48999999999999999999764

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>COG1160 Predicted GTPases [General function prediction only]

Probab=98.93  E-value=5.6e-09  Score=85.80  Aligned_cols=115  Identities=16%  Similarity=0.027  Sum_probs=77.7

Q ss_pred             EEEEEEEEECCeEEEEEEEeCCCccccC---------CccccccccCcEEEEEEeCCChhhHH--hHHHHHHHHHhhcCC
Q 029854           14 EVHPLDFFTNCGKIRFYCWDTAGQEKFG---------GLRDGYYIHGQCAIIMFDVTARLTYK--NVPTWHRDLCRVCEN   82 (186)
Q Consensus        14 ~~~~~~~~~~~~~~~l~l~Dt~G~~~~~---------~~~~~~~~~ad~vilv~D~~~~~s~~--~i~~~~~~~~~~~~~   82 (186)
                      |-......+.+..  +.++||||.+...         ......+..||++|||+|+....+-+  .+.+|+.     ..+
T Consensus        40 Dr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr-----~~~  112 (444)
T COG1160          40 DRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILR-----RSK  112 (444)
T ss_pred             CCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-----hcC
Confidence            3333344455555  6777999987433         23445678999999999998754433  2333333     246


Q ss_pred             CCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854           83 IPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus        83 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                      .|+++|+||+|-...  .....++..-.--+.+.+||..|.|+.+++++++..+.
T Consensus       113 kpviLvvNK~D~~~~--e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~  165 (444)
T COG1160         113 KPVILVVNKIDNLKA--EELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLP  165 (444)
T ss_pred             CCEEEEEEcccCchh--hhhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhcC
Confidence            999999999996411  11122333322247999999999999999999999985

>PRK12288 GTPase RsgA; Reviewed

Probab=98.93  E-value=6.5e-09  Score=84.39  Aligned_cols=87  Identities=14%  Similarity=0.124  Sum_probs=68.0

Q ss_pred             cccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCccc---ChHHHHHHHHcCCcEEEeccCCCCC
Q 029854           48 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTFHRKKNLQYYEISAKSNYN  124 (186)
Q Consensus        48 ~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~Sa~~~~g  124 (186)
                      ..++|.+++|++.+...++..+..|+..+..  .+.|.+||+||+|+.+...   ...........+++++.+||++|.|
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~--~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~G  195 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET--LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEG  195 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh--cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcC
Confidence            4679999999999888899999999875543  4789999999999975321   1122233345678999999999999


Q ss_pred             chHHHHHHHHHH
Q 029854          125 FEKPFLYLARKL  136 (186)
Q Consensus       125 i~~l~~~l~~~i  136 (186)
                      +++++..+...+
T Consensus       196 ideL~~~L~~ki  207 (347)
T PRK12288        196 LEELEAALTGRI  207 (347)
T ss_pred             HHHHHHHHhhCC
Confidence            999999987644

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=98.93  E-value=4.9e-09  Score=82.46  Aligned_cols=95  Identities=20%  Similarity=0.145  Sum_probs=64.0

Q ss_pred             eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHH
Q 029854           25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV  104 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~  104 (186)
                      ...++.||||||...|...+...++.+|++|+|+|+++...-+. ...+..+..  .+.|+++++||+|+.+........
T Consensus        62 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~--~~~p~ivviNK~D~~~a~~~~~~~  138 (270)
T cd01886          62 KDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR--YNVPRIAFVNKMDRTGADFFRVVE  138 (270)
T ss_pred             CCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHH
Confidence            35678889999998888888889999999999999987543222 233333333  368999999999987533211122


Q ss_pred             HHHHHcCC----cEEEeccCCC
Q 029854          105 TFHRKKNL----QYYEISAKSN  122 (186)
Q Consensus       105 ~~~~~~~~----~~~~~Sa~~~  122 (186)
                      ++...++.    ..+.+|+..+
T Consensus       139 ~l~~~l~~~~~~~~~Pisa~~~  160 (270)
T cd01886         139 QIREKLGANPVPLQLPIGEEDD  160 (270)
T ss_pred             HHHHHhCCCceEEEeccccCCC
Confidence            33333332    2677888754

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.90  E-value=1.9e-08  Score=79.10  Aligned_cols=105  Identities=14%  Similarity=0.165  Sum_probs=75.8

Q ss_pred             EEEEeCCCccccCC----cccccc---ccCcEEEEEEeCCCh---hhHHhHHHHHHHHHhhc---CCCCEEEEEeCCCCC
Q 029854           29 FYCWDTAGQEKFGG----LRDGYY---IHGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVK   95 (186)
Q Consensus        29 l~l~Dt~G~~~~~~----~~~~~~---~~ad~vilv~D~~~~---~s~~~i~~~~~~~~~~~---~~~p~ilv~nK~Dl~   95 (186)
                      +.+=|.||.-.-..    +.-.|+   ..+.+.+||+|.+..   ..++.+.....++..+.   .+.|.+||+||+|++
T Consensus       246 ~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~  325 (366)
T KOG1489|consen  246 ITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLP  325 (366)
T ss_pred             eEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCch
Confidence            66779999654333    333444   469999999999998   77777766666655543   689999999999996


Q ss_pred             CcccChHHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHH
Q 029854           96 NRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLAR  134 (186)
Q Consensus        96 ~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~  134 (186)
                      +.+.. ....+++...- .++.+||++++|+.+++..|.+
T Consensus       326 eae~~-~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  326 EAEKN-LLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLRE  364 (366)
T ss_pred             hHHHH-HHHHHHHHcCCCcEEEeeeccccchHHHHHHHhh
Confidence            33211 12355665544 4999999999999999988764

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=98.89  E-value=9.9e-09  Score=80.63  Aligned_cols=110  Identities=14%  Similarity=0.160  Sum_probs=75.4

Q ss_pred             eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHH
Q 029854           25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV  104 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~  104 (186)
                      ..+.+.+|||||...|...+..+++.+|++++|+|+++........-|. .+..  .+.|+++++||+|+..........
T Consensus        62 ~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~~--~~~p~iivvNK~D~~~~~~~~~~~  138 (268)
T cd04170          62 KGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWE-FADE--AGIPRIIFINKMDRERADFDKTLA  138 (268)
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHHH--cCCCEEEEEECCccCCCCHHHHHH
Confidence            4467889999999888777888999999999999999865544333332 2222  368999999999987653322233


Q ss_pred             HHHHHcCCcEE--EeccCCCCCchHHHHHHHHHHh
Q 029854          105 TFHRKKNLQYY--EISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus       105 ~~~~~~~~~~~--~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                      .+...++.+++  .+...+|.|+..+.+.+.....
T Consensus       139 ~l~~~~~~~~~~~~ip~~~~~~~~~~vd~~~~~~~  173 (268)
T cd04170         139 ALQEAFGRPVVPLQLPIGEGDDFKGVVDLLTEKAY  173 (268)
T ss_pred             HHHHHhCCCeEEEEecccCCCceeEEEEcccCEEE
Confidence            44455565544  4456777777666665554443

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.87  E-value=1.1e-08  Score=89.34  Aligned_cols=101  Identities=22%  Similarity=0.160  Sum_probs=64.9

Q ss_pred             eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcc--cCh-
Q 029854           25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--VKA-  101 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--~~~-  101 (186)
                      ...++.|+||||++.|.......+..+|++++|+|++....-+.. ..+..+... ...|++|++||+|+.+..  ... 
T Consensus       102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~-e~~~~~~~~-~~~~iivvvNK~D~~~~~~~~~~~  179 (632)
T PRK05506        102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTR-RHSFIASLL-GIRHVVLAVNKMDLVDYDQEVFDE  179 (632)
T ss_pred             CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCH-HHHHHHHHh-CCCeEEEEEEecccccchhHHHHH
Confidence            344667899999988865555567899999999999765322211 111112221 235788999999996411  111 


Q ss_pred             ---HHHHHHHHcC---CcEEEeccCCCCCchH
Q 029854          102 ---KQVTFHRKKN---LQYYEISAKSNYNFEK  127 (186)
Q Consensus       102 ---~~~~~~~~~~---~~~~~~Sa~~~~gi~~  127 (186)
                         +...+....+   .+++.+||++|.|+.+
T Consensus       180 i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        180 IVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence               1123334444   4699999999999985

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=98.86  E-value=1.8e-08  Score=84.56  Aligned_cols=103  Identities=18%  Similarity=0.171  Sum_probs=66.8

Q ss_pred             CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChh---hH---HhHHHHHHHHHhhcCCCC-EEEEEeCCCCC
Q 029854           23 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TY---KNVPTWHRDLCRVCENIP-IVLCGNKVDVK   95 (186)
Q Consensus        23 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~---s~---~~i~~~~~~~~~~~~~~p-~ilv~nK~Dl~   95 (186)
                      ......+.|+||||+.+|.......+..+|++|+|+|++...   .|   .....-+..+..  .++| +|++.||+|..
T Consensus        81 ~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~--~gi~~iiv~vNKmD~~  158 (446)
T PTZ00141         81 ETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT--LGVKQMIVCINKMDDK  158 (446)
T ss_pred             ccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH--cCCCeEEEEEEccccc
Confidence            345667888899999999777777788999999999998642   11   112221222222  2555 67999999953


Q ss_pred             Cc----c----cChHHHHHHHHc-----CCcEEEeccCCCCCchH
Q 029854           96 NR----Q----VKAKQVTFHRKK-----NLQYYEISAKSNYNFEK  127 (186)
Q Consensus        96 ~~----~----~~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~  127 (186)
                      ..    .    +..+...+....     +++++.+|+.+|.|+.+
T Consensus       159 ~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        159 TVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             cchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            21    1    112222333332     35799999999999864

>CHL00071 tufA elongation factor Tu

Probab=98.85  E-value=1.8e-08  Score=83.72  Aligned_cols=98  Identities=13%  Similarity=-0.001  Sum_probs=65.1

Q ss_pred             eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC-EEEEEeCCCCCCcccC---
Q 029854           25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVK---  100 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~---  100 (186)
                      ...++.|.||||+..|.......+..+|++++|+|+.....-+ ....+..+..  .+.| +|++.||+|+.+....   
T Consensus        73 ~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~q-t~~~~~~~~~--~g~~~iIvvvNK~D~~~~~~~~~~  149 (409)
T CHL00071         73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQ-TKEHILLAKQ--VGVPNIVVFLNKEDQVDDEELLEL  149 (409)
T ss_pred             CCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHH-HHHHHHHHHH--cCCCEEEEEEEccCCCCHHHHHHH
Confidence            4456778899999888666666778999999999998643222 2233333333  2678 7789999999753221   


Q ss_pred             --hHHHHHHHHcC-----CcEEEeccCCCCCc
Q 029854          101 --AKQVTFHRKKN-----LQYYEISAKSNYNF  125 (186)
Q Consensus       101 --~~~~~~~~~~~-----~~~~~~Sa~~~~gi  125 (186)
                        .+...+.+..+     ++++.+||.+|.|+
T Consensus       150 ~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        150 VELEVRELLSKYDFPGDDIPIVSGSALLALEA  181 (409)
T ss_pred             HHHHHHHHHHHhCCCCCcceEEEcchhhcccc
Confidence              12223333333     67999999998753

>cd01850 CDC_Septin CDC/Septin

Probab=98.85  E-value=3.3e-08  Score=78.01  Aligned_cols=112  Identities=13%  Similarity=0.123  Sum_probs=73.3

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCcccc--------------------------CCccccccc--cCcEEEEE
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF--------------------------GGLRDGYYI--HGQCAIIM   57 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~--------------------------~~~~~~~~~--~ad~vilv   57 (186)
                      .+.+|++++.....+..+|..+++.+|||||...+                          ...+...+.  .+|+|+++
T Consensus        42 ~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~  121 (276)
T cd01850          42 HIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYF  121 (276)
T ss_pred             ccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEE
Confidence            36788888888888888899999999999994322                          112223444  47888888


Q ss_pred             EeCCChhhHHhHHHH-HHHHHhhcCCCCEEEEEeCCCCCCcc----cChHHHHHHHHcCCcEEEeccCC
Q 029854           58 FDVTARLTYKNVPTW-HRDLCRVCENIPIVLCGNKVDVKNRQ----VKAKQVTFHRKKNLQYYEISAKS  121 (186)
Q Consensus        58 ~D~~~~~s~~~i~~~-~~~~~~~~~~~p~ilv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~Sa~~  121 (186)
                      ++.+... .   ..| ++.+.......|+++|+||+|+....    ......+.+..++++++.+....
T Consensus       122 i~~~~~~-l---~~~D~~~lk~l~~~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~~~  186 (276)
T cd01850         122 IEPTGHG-L---KPLDIEFMKRLSKRVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIYKFPEDE  186 (276)
T ss_pred             EeCCCCC-C---CHHHHHHHHHHhccCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence            8877521 1   112 22222223368999999999985421    12223466778888888776543

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>TIGR00484 EF-G translation elongation factor EF-G

Probab=98.84  E-value=1.2e-08  Score=90.03  Aligned_cols=95  Identities=18%  Similarity=0.130  Sum_probs=65.5

Q ss_pred             eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHH
Q 029854           25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV  104 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~  104 (186)
                      ...++.||||||+.+|...+...++.+|++|+|+|+++....+.. .++..+..  .+.|+++++||+|+..........
T Consensus        73 ~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~--~~~p~ivviNK~D~~~~~~~~~~~  149 (689)
T TIGR00484        73 KGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR--YEVPRIAFVNKMDKTGANFLRVVN  149 (689)
T ss_pred             CCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHH
Confidence            456888999999998888888899999999999999986555433 23333333  368999999999997543222222


Q ss_pred             HHHHHcCC----cEEEeccCCC
Q 029854          105 TFHRKKNL----QYYEISAKSN  122 (186)
Q Consensus       105 ~~~~~~~~----~~~~~Sa~~~  122 (186)
                      .+...++.    ..+.+|+..+
T Consensus       150 ~i~~~l~~~~~~~~ipis~~~~  171 (689)
T TIGR00484       150 QIKQRLGANAVPIQLPIGAEDN  171 (689)
T ss_pred             HHHHHhCCCceeEEeccccCCC
Confidence            33343332    2456676655

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PRK00049 elongation factor Tu; Reviewed

Probab=98.84  E-value=3.2e-08  Score=81.94  Aligned_cols=111  Identities=11%  Similarity=-0.018  Sum_probs=70.3

Q ss_pred             ECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEE-EEEeCCCCCCccc-
Q 029854           22 TNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQV-   99 (186)
Q Consensus        22 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~-   99 (186)
                      +.....++.|.||||+.+|.......+..||++++|+|++....-+ ....+..+..  .+.|.+ ++.||+|+.+... 
T Consensus        70 ~~~~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~q-t~~~~~~~~~--~g~p~iiVvvNK~D~~~~~~~  146 (396)
T PRK00049         70 YETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ--VGVPYIVVFLNKCDMVDDEEL  146 (396)
T ss_pred             EcCCCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchH-HHHHHHHHHH--cCCCEEEEEEeecCCcchHHH
Confidence            3334456778899999888666667788999999999998753222 2233333333  267876 6899999974211 


Q ss_pred             C----hHHHHHHHHc-----CCcEEEeccCCCC----------CchHHHHHHHHH
Q 029854          100 K----AKQVTFHRKK-----NLQYYEISAKSNY----------NFEKPFLYLARK  135 (186)
Q Consensus       100 ~----~~~~~~~~~~-----~~~~~~~Sa~~~~----------gi~~l~~~l~~~  135 (186)
                      .    .+...+....     +++++.+||++|.          |+..+++.|...
T Consensus       147 ~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~  201 (396)
T PRK00049        147 LELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY  201 (396)
T ss_pred             HHHHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence            1    1122233332     3689999999875          344555555543

>PLN03126 Elongation factor Tu; Provisional

Probab=98.82  E-value=1.9e-08  Score=84.94  Aligned_cols=98  Identities=11%  Similarity=-0.022  Sum_probs=66.0

Q ss_pred             eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC-EEEEEeCCCCCCccc-Ch-
Q 029854           25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV-KA-  101 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~-~~-  101 (186)
                      ...++.||||||+++|.......+..+|++++|+|+.+...-+ ...++..+..  .++| +++++||+|+.+... .. 
T Consensus       142 ~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~--~gi~~iIvvvNK~Dl~~~~~~~~~  218 (478)
T PLN03126        142 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQ--VGVPNMVVFLNKQDQVDDEELLEL  218 (478)
T ss_pred             CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH--cCCCeEEEEEecccccCHHHHHHH
Confidence            4457789999999998766666778899999999998753322 2333333333  2677 788999999975221 11 


Q ss_pred             ---HHHHHHHHc-----CCcEEEeccCCCCCc
Q 029854          102 ---KQVTFHRKK-----NLQYYEISAKSNYNF  125 (186)
Q Consensus       102 ---~~~~~~~~~-----~~~~~~~Sa~~~~gi  125 (186)
                         +...+.+..     +++++.+||.+|.++
T Consensus       219 i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~  250 (478)
T PLN03126        219 VELEVRELLSSYEFPGDDIPIISGSALLALEA  250 (478)
T ss_pred             HHHHHHHHHHhcCCCcCcceEEEEEccccccc
Confidence               222333433     467999999988643

>PRK12739 elongation factor G; Reviewed

Probab=98.79  E-value=2.2e-08  Score=88.28  Aligned_cols=79  Identities=19%  Similarity=0.166  Sum_probs=56.2

Q ss_pred             EEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCC
Q 029854           13 VEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV   92 (186)
Q Consensus        13 ~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~   92 (186)
                      ++....++..+  ..++.||||||+..|...+...++.+|++|+|+|+++...-+.. ..+..+..  .+.|+++++||+
T Consensus        61 i~~~~~~~~~~--~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~--~~~p~iv~iNK~  135 (691)
T PRK12739         61 ITSAATTCFWK--GHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK--YGVPRIVFVNKM  135 (691)
T ss_pred             ccceeEEEEEC--CEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECC
Confidence            33334444444  45778899999988877788889999999999999876443322 22333332  368999999999


Q ss_pred             CCCC
Q 029854           93 DVKN   96 (186)
Q Consensus        93 Dl~~   96 (186)
                      |+..
T Consensus       136 D~~~  139 (691)
T PRK12739        136 DRIG  139 (691)
T ss_pred             CCCC
Confidence            9864

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.77  E-value=4.3e-08  Score=79.65  Aligned_cols=110  Identities=15%  Similarity=0.113  Sum_probs=73.3

Q ss_pred             EEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChh---hHHhHHHH--HHHHHhhcCCCCEEEEEeCCCC
Q 029854           20 FFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYKNVPTW--HRDLCRVCENIPIVLCGNKVDV   94 (186)
Q Consensus        20 ~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~---s~~~i~~~--~~~~~~~~~~~p~ilv~nK~Dl   94 (186)
                      ..+....+.+.|+|+||++.|-.-.-.-++.||+.|||+|+++.+   +|.---+.  .-.+.+...-..+|++.||+|+
T Consensus        78 ~~fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~  157 (428)
T COG5256          78 SKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDL  157 (428)
T ss_pred             EEeecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccc
Confidence            344557778999999999998877777888999999999999862   22111111  1112222234568999999999


Q ss_pred             CCcc------cChHHHHHHHHcC-----CcEEEeccCCCCCchHHH
Q 029854           95 KNRQ------VKAKQVTFHRKKN-----LQYYEISAKSNYNFEKPF  129 (186)
Q Consensus        95 ~~~~------~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~  129 (186)
                      .+..      +..+...+.+..+     ++++.||+.+|.|+.+.=
T Consensus       158 v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s  203 (428)
T COG5256         158 VSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS  203 (428)
T ss_pred             cccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccC
Confidence            8621      1122223444444     469999999999976543

>PLN03127 Elongation factor Tu; Provisional

Probab=98.77  E-value=7.6e-08  Score=80.76  Aligned_cols=111  Identities=14%  Similarity=0.025  Sum_probs=67.3

Q ss_pred             CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC-EEEEEeCCCCCCccc-C
Q 029854           23 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV-K  100 (186)
Q Consensus        23 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~-~  100 (186)
                      +....++.|.||||+.+|.......+..+|++++|+|+++...-+ ....+..+..  .+.| +|++.||+|+.+... .
T Consensus       120 ~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~q-t~e~l~~~~~--~gip~iIvviNKiDlv~~~~~~  196 (447)
T PLN03127        120 ETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ--VGVPSLVVFLNKVDVVDDEELL  196 (447)
T ss_pred             cCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHH--cCCCeEEEEEEeeccCCHHHHH
Confidence            334457788899999887655555667799999999998653222 1222222322  3678 578899999974221 1


Q ss_pred             h----HHHHHHHHc-----CCcEEEeccC---CCCC-------chHHHHHHHHHH
Q 029854          101 A----KQVTFHRKK-----NLQYYEISAK---SNYN-------FEKPFLYLARKL  136 (186)
Q Consensus       101 ~----~~~~~~~~~-----~~~~~~~Sa~---~~~g-------i~~l~~~l~~~i  136 (186)
                      .    +..++....     .++++.+||.   +|.|       +..+++.+...+
T Consensus       197 ~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l  251 (447)
T PLN03127        197 ELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI  251 (447)
T ss_pred             HHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence            1    111222222     2578888876   4545       556666665544

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=98.73  E-value=1.1e-07  Score=74.62  Aligned_cols=131  Identities=18%  Similarity=0.232  Sum_probs=80.5

Q ss_pred             CCeEEEEEEEeCCCcc------ccC------CccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEe
Q 029854           23 NCGKIRFYCWDTAGQE------KFG------GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGN   90 (186)
Q Consensus        23 ~~~~~~l~l~Dt~G~~------~~~------~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~n   90 (186)
                      .....++.|+||||.-      ++.      +-.+..+..||++++|+|+++.-..-. .+.+..+.. ..+.|-++|.|
T Consensus       116 ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~-ys~ips~lvmn  193 (379)
T KOG1423|consen  116 TSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEE-YSKIPSILVMN  193 (379)
T ss_pred             ecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHH-HhcCCceeecc
Confidence            3467899999999942      111      123445678999999999997322111 122323333 35789999999


Q ss_pred             CCCCCCcc--------------cChHHHHHHHHcC-------------C----cEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           91 KVDVKNRQ--------------VKAKQVTFHRKKN-------------L----QYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        91 K~Dl~~~~--------------~~~~~~~~~~~~~-------------~----~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      |.|...+.              ......++..++.             .    .+|.+||++|.||+++-++|+.+....
T Consensus       194 kid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~g  273 (379)
T KOG1423|consen  194 KIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPG  273 (379)
T ss_pred             chhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCC
Confidence            99975311              1111112222221             1    389999999999999999999888766


Q ss_pred             CCcccccCCCCCCCcc
Q 029854          140 PNLHFVESPALAPPEV  155 (186)
Q Consensus       140 ~~~~~~~~~~~~~~~~  155 (186)
                      +-..........+++.
T Consensus       274 pW~y~a~i~T~~s~e~  289 (379)
T KOG1423|consen  274 PWKYPADIVTEESPEF  289 (379)
T ss_pred             CCCCCcccccccCHHH
Confidence            5443333333334443

>cd01858 NGP_1 NGP-1

Probab=98.72  E-value=5.4e-08  Score=70.37  Aligned_cols=91  Identities=12%  Similarity=0.069  Sum_probs=58.2

Q ss_pred             cccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHH-HHHHcCCcEEEeccCCCCC
Q 029854           46 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYN  124 (186)
Q Consensus        46 ~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~g  124 (186)
                      ..+++||++++|+|++++..-.. ..+.+.+.....+.|+++|.||+|+.++........ +.+.+....+.+||+.+.|
T Consensus         4 ~~l~~aD~il~VvD~~~p~~~~~-~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~   82 (157)
T cd01858           4 KVIDSSDVVIQVLDARDPMGTRC-KHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPFG   82 (157)
T ss_pred             HhhhhCCEEEEEEECCCCccccC-HHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeecccccc
Confidence            45788999999999998643211 122223322234689999999999964321111111 1122222357899999999


Q ss_pred             chHHHHHHHHHHh
Q 029854          125 FEKPFLYLARKLA  137 (186)
Q Consensus       125 i~~l~~~l~~~i~  137 (186)
                      ++++++.+...+.
T Consensus        83 ~~~L~~~l~~~~~   95 (157)
T cd01858          83 KGSLIQLLRQFSK   95 (157)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999977643

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01856 YlqF YlqF

Probab=98.72  E-value=1.9e-08  Score=73.84  Aligned_cols=92  Identities=18%  Similarity=0.129  Sum_probs=62.5

Q ss_pred             CCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccC
Q 029854           41 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAK  120 (186)
Q Consensus        41 ~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~  120 (186)
                      .......+++||++++|+|++++.+.... .    +.....+.|+++|.||+|+.+........+..+..+..++.+||+
T Consensus        10 ~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~----i~~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iSa~   84 (171)
T cd01856          10 LRQIKEKLKLVDLVIEVRDARIPLSSRNP-L----LEKILGNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVNAK   84 (171)
T ss_pred             HHHHHHHHhhCCEEEEEeeccCccCcCCh-h----hHhHhcCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEEEECC
Confidence            34456678899999999999876542221 1    222223679999999999964321111112223334568999999


Q ss_pred             CCCCchHHHHHHHHHHh
Q 029854          121 SNYNFEKPFLYLARKLA  137 (186)
Q Consensus       121 ~~~gi~~l~~~l~~~i~  137 (186)
                      ++.|++++...+...+.
T Consensus        85 ~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          85 SGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             CcccHHHHHHHHHHHHH
Confidence            99999999999988763

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=98.70  E-value=4.4e-08  Score=86.74  Aligned_cols=87  Identities=21%  Similarity=0.114  Sum_probs=65.5

Q ss_pred             ccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEE
Q 029854            7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV   86 (186)
Q Consensus         7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~i   86 (186)
                      +..|+...+....+..++..+++.||||||+.+|.......++.+|++|+|+|+......+...-|. ....  .+.|++
T Consensus        66 rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~-~~~~--~~~p~i  142 (720)
T TIGR00490        66 RGITINAANVSMVHEYEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLR-QALK--ENVKPV  142 (720)
T ss_pred             hcchhhcccceeEEeecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHH-HHHH--cCCCEE
Confidence            5568887776666666778899999999999998888888999999999999998743333222222 2222  367889


Q ss_pred             EEEeCCCCCC
Q 029854           87 LCGNKVDVKN   96 (186)
Q Consensus        87 lv~nK~Dl~~   96 (186)
                      +++||+|...
T Consensus       143 vviNKiD~~~  152 (720)
T TIGR00490       143 LFINKVDRLI  152 (720)
T ss_pred             EEEEChhccc
Confidence            9999999863

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=98.69  E-value=2.4e-07  Score=79.65  Aligned_cols=124  Identities=14%  Similarity=0.112  Sum_probs=87.6

Q ss_pred             eEEEEEEEEEECCeEEEEEEEeCCCccccCCc------cccccc--cCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCC
Q 029854           12 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL------RDGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI   83 (186)
Q Consensus        12 g~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~------~~~~~~--~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~   83 (186)
                      |+.+..++-......-.+++.|.||.......      .+.|+.  .+|++|-|+|+++.+.  ++. .--++.+  -+.
T Consensus        35 GvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeR--nLy-ltlQLlE--~g~  109 (653)
T COG0370          35 GVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLER--NLY-LTLQLLE--LGI  109 (653)
T ss_pred             CeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHHH--HHH-HHHHHHH--cCC
Confidence            45555555555444445778899997654432      344443  4799999999998643  211 1222333  379


Q ss_pred             CEEEEEeCCCCCCc-ccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029854           84 PIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus        84 p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                      |++++.|++|...+ .+.-+..++.+..|+|++++||++|.|++++...+.+....+.
T Consensus       110 p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~~~~~~  167 (653)
T COG0370         110 PMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIELAESKT  167 (653)
T ss_pred             CeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhccccc
Confidence            99999999999754 3445566888999999999999999999999999987665554

>COG1084 Predicted GTPase [General function prediction only]

Probab=98.69  E-value=2.2e-07  Score=73.59  Aligned_cols=125  Identities=16%  Similarity=0.182  Sum_probs=83.3

Q ss_pred             ccceEEEEEEEEEECCeEEEEEEEeCCCcccc-----CCc---cccccc-cCcEEEEEEeCCChh--hHHhHHHHHHHHH
Q 029854            9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-----GGL---RDGYYI-HGQCAIIMFDVTARL--TYKNVPTWHRDLC   77 (186)
Q Consensus         9 ~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-----~~~---~~~~~~-~ad~vilv~D~~~~~--s~~~i~~~~~~~~   77 (186)
                      +|-|+.+.+...    +..++|++||||.-.-     +..   .-..++ =+++|+|+||.+...  +.+.-...++++.
T Consensus       201 TTK~i~vGhfe~----~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk  276 (346)
T COG1084         201 TTKGIHVGHFER----GYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIK  276 (346)
T ss_pred             cccceeEeeeec----CCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHH
Confidence            466666665443    6678899999996431     111   111222 278999999999765  4555556777777


Q ss_pred             hhcCCCCEEEEEeCCCCCCcccChHHH-HHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           78 RVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        78 ~~~~~~p~ilv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      .... .|+++|.||+|+....-..+.. .+....+.....+++..+.+++.+-..+.....+
T Consensus       277 ~~f~-~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~a~~  337 (346)
T COG1084         277 ELFK-APIVVVINKIDIADEEKLEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKTALE  337 (346)
T ss_pred             HhcC-CCeEEEEecccccchhHHHHHHHHHHhhccccccceeeeehhhHHHHHHHHHHHhhc
Confidence            7765 8999999999987533333322 2333334458899999999999887777766443

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.69  E-value=6.1e-08  Score=68.87  Aligned_cols=77  Identities=12%  Similarity=0.152  Sum_probs=53.7

Q ss_pred             ccccccCcEEEEEEeCCChhhHH--hHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCC
Q 029854           45 DGYYIHGQCAIIMFDVTARLTYK--NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSN  122 (186)
Q Consensus        45 ~~~~~~ad~vilv~D~~~~~s~~--~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  122 (186)
                      ...++.||++++|+|++++.+..  .+..|+...   ..+.|+++|+||+|+.+........+.....+..++.+||++|
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~   82 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---DPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKE   82 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---cCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCC
Confidence            34577899999999999877644  334444432   2478999999999996433222233444555678999999988


Q ss_pred             CC
Q 029854          123 YN  124 (186)
Q Consensus       123 ~g  124 (186)
                      .+
T Consensus        83 ~~   84 (141)
T cd01857          83 NA   84 (141)
T ss_pred             Cc
Confidence            64

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>COG2262 HflX GTPases [General function prediction only]

Probab=98.67  E-value=2e-07  Score=75.82  Aligned_cols=112  Identities=18%  Similarity=0.123  Sum_probs=75.2

Q ss_pred             CeEEEEEEEeCCCccccC--Cccc------cccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh-cCCCCEEEEEeCCCC
Q 029854           24 CGKIRFYCWDTAGQEKFG--GLRD------GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDV   94 (186)
Q Consensus        24 ~~~~~l~l~Dt~G~~~~~--~~~~------~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~-~~~~p~ilv~nK~Dl   94 (186)
                      |..+.  +.||-|--+--  .+..      .-...||+++.|+|++++...+.+..-..-+.+. ..+.|+|+|.||+|+
T Consensus       239 g~~vl--LtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~  316 (411)
T COG2262         239 GRKVL--LTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDL  316 (411)
T ss_pred             CceEE--EecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccc
Confidence            44444  45998843221  1111      1245799999999999996666665544444444 257999999999997


Q ss_pred             CCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029854           95 KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                      .....   .........-..+.+||++|.|++.+...|...+....
T Consensus       317 ~~~~~---~~~~~~~~~~~~v~iSA~~~~gl~~L~~~i~~~l~~~~  359 (411)
T COG2262         317 LEDEE---ILAELERGSPNPVFISAKTGEGLDLLRERIIELLSGLR  359 (411)
T ss_pred             cCchh---hhhhhhhcCCCeEEEEeccCcCHHHHHHHHHHHhhhcc
Confidence            64332   11222222215899999999999999999999988554

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.65  E-value=1.8e-07  Score=67.44  Aligned_cols=82  Identities=17%  Similarity=0.171  Sum_probs=55.4

Q ss_pred             cEEEEEEeCCChhhHHhHHHHHHH-HHhhcCCCCEEEEEeCCCCCCcccChHHH-HHHHHcCCcEEEeccCCCCCchHHH
Q 029854           52 QCAIIMFDVTARLTYKNVPTWHRD-LCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF  129 (186)
Q Consensus        52 d~vilv~D~~~~~s~~~i~~~~~~-~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~Sa~~~~gi~~l~  129 (186)
                      |++++|+|++++.+...  .|+.. ... ..+.|+++|.||+|+.+........ .+....+..++.+||++|.|+++++
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~-~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~   77 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIERVLIK-EKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKE   77 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHHHHHh-cCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHH
Confidence            68999999998765543  33331 111 2478999999999996432111111 2222334568999999999999999


Q ss_pred             HHHHHHH
Q 029854          130 LYLARKL  136 (186)
Q Consensus       130 ~~l~~~i  136 (186)
                      +.+.+.+
T Consensus        78 ~~i~~~~   84 (155)
T cd01849          78 SAFTKQT   84 (155)
T ss_pred             HHHHHHh
Confidence            9987654

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.62  E-value=1.4e-07  Score=74.55  Aligned_cols=91  Identities=18%  Similarity=0.198  Sum_probs=62.4

Q ss_pred             cccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCC
Q 029854           44 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNY  123 (186)
Q Consensus        44 ~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  123 (186)
                      ....++.||++|+|+|++.+.+.+.  .++....   .+.|+++|.||+|+.+........+..+..+.+++.+||+++.
T Consensus        15 ~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l---~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~   89 (276)
T TIGR03596        15 IKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR---GNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAINAKKGK   89 (276)
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH---CCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEECCCcc
Confidence            4556789999999999987655332  1222222   3689999999999964321111112223345678999999999


Q ss_pred             CchHHHHHHHHHHhCC
Q 029854          124 NFEKPFLYLARKLAGD  139 (186)
Q Consensus       124 gi~~l~~~l~~~i~~~  139 (186)
                      |++++.+.+.+.+.+.
T Consensus        90 gi~~L~~~i~~~~~~~  105 (276)
T TIGR03596        90 GVKKIIKAAKKLLKEK  105 (276)
T ss_pred             cHHHHHHHHHHHHHHh
Confidence            9999999988777543

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.55  E-value=1.4e-07  Score=69.60  Aligned_cols=73  Identities=16%  Similarity=0.250  Sum_probs=47.4

Q ss_pred             EEEEEEEeCCCccccCCcccc---ccccCcEEEEEEeCCC-hhhHHhHHHHHHHHHhh----cCCCCEEEEEeCCCCCCc
Q 029854           26 KIRFYCWDTAGQEKFGGLRDG---YYIHGQCAIIMFDVTA-RLTYKNVPTWHRDLCRV----CENIPIVLCGNKVDVKNR   97 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~~~~~---~~~~ad~vilv~D~~~-~~s~~~i~~~~~~~~~~----~~~~p~ilv~nK~Dl~~~   97 (186)
                      .-.+.++|+||+.+.+.....   +...+.+||||+|++. ...+.++..++-.+...    ....|++|++||.|+...
T Consensus        48 ~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen   48 GKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA  127 (181)
T ss_dssp             GTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred             CCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence            345677899999998764433   4788999999999984 33455554444444332    247899999999999754


Q ss_pred             c
Q 029854           98 Q   98 (186)
Q Consensus        98 ~   98 (186)
                      .
T Consensus       128 ~  128 (181)
T PF09439_consen  128 K  128 (181)
T ss_dssp             -
T ss_pred             C
Confidence            3

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=98.53  E-value=1.7e-07  Score=75.46  Aligned_cols=129  Identities=14%  Similarity=0.149  Sum_probs=88.4

Q ss_pred             ccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhH--Hh--------HHHHHHHH
Q 029854            7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTY--KN--------VPTWHRDL   76 (186)
Q Consensus         7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~--~~--------i~~~~~~~   76 (186)
                      ..||.|+.-...++    +...+.++|+|||..-+.-|-+.+.+++++|||++++..+..  ++        -...++.+
T Consensus       179 R~~T~GI~e~~F~~----k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI  254 (354)
T KOG0082|consen  179 RVPTTGIVEVEFTI----KGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESI  254 (354)
T ss_pred             ccCcCCeeEEEEEe----CCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHH
Confidence            47888866665554    457888899999999999999999999999999999876532  22        11233333


Q ss_pred             Hhhc--CCCCEEEEEeCCCCCCcc-----------------cChHHH-----HHHHHc-----CCcEEEeccCCCCCchH
Q 029854           77 CRVC--ENIPIVLCGNKVDVKNRQ-----------------VKAKQV-----TFHRKK-----NLQYYEISAKSNYNFEK  127 (186)
Q Consensus        77 ~~~~--~~~p~ilv~nK~Dl~~~~-----------------~~~~~~-----~~~~~~-----~~~~~~~Sa~~~~gi~~  127 (186)
                      .+..  .+.++|++.||.||-...                 ...++.     +|...+     .+-+..++|.+-.+|+.
T Consensus       255 ~n~~~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~  334 (354)
T KOG0082|consen  255 CNNKWFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQF  334 (354)
T ss_pred             hcCcccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHH
Confidence            3321  579999999999983210                 111111     222211     12355678999999999


Q ss_pred             HHHHHHHHHhCC
Q 029854          128 PFLYLARKLAGD  139 (186)
Q Consensus       128 l~~~l~~~i~~~  139 (186)
                      +|..+...+...
T Consensus       335 vf~av~d~Ii~~  346 (354)
T KOG0082|consen  335 VFDAVTDTIIQN  346 (354)
T ss_pred             HHHHHHHHHHHH
Confidence            999999888654

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.50  E-value=9.5e-07  Score=66.03  Aligned_cols=69  Identities=16%  Similarity=0.221  Sum_probs=48.7

Q ss_pred             EEEEEeCCCccccCCccccccc---cCcEEEEEEeCCCh-hhHHhHHHHHHH-HHhh---cCCCCEEEEEeCCCCCC
Q 029854           28 RFYCWDTAGQEKFGGLRDGYYI---HGQCAIIMFDVTAR-LTYKNVPTWHRD-LCRV---CENIPIVLCGNKVDVKN   96 (186)
Q Consensus        28 ~l~l~Dt~G~~~~~~~~~~~~~---~ad~vilv~D~~~~-~s~~~i~~~~~~-~~~~---~~~~p~ilv~nK~Dl~~   96 (186)
                      ..+|.|.||+.+.+.....+++   .|-++|||+|+.-- ....++..++-. +...   ....|++|++||.|+.-
T Consensus        83 ~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~t  159 (238)
T KOG0090|consen   83 NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFT  159 (238)
T ss_pred             ceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhh
Confidence            3778899999998887777777   79999999998642 233333333333 2222   24689999999999853

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=98.49  E-value=1.3e-06  Score=65.62  Aligned_cols=107  Identities=17%  Similarity=0.153  Sum_probs=68.7

Q ss_pred             EEEEEEeCCCccccCCcccc-----ccccCcEEEEEEeCCChhhHHhH-HHHHHHHHhhcCCCCEEEEEeCCCCCC--cc
Q 029854           27 IRFYCWDTAGQEKFGGLRDG-----YYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN--RQ   98 (186)
Q Consensus        27 ~~l~l~Dt~G~~~~~~~~~~-----~~~~ad~vilv~D~~~~~s~~~i-~~~~~~~~~~~~~~p~ilv~nK~Dl~~--~~   98 (186)
                      ..+.+|||+|..........     .+.++|++++|.+.    +|... ..|++.+.+.  +.|+++|+||+|+..  ..
T Consensus        52 ~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~----~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~  125 (197)
T cd04104          52 PNVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISST----RFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQ  125 (197)
T ss_pred             CCceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCC----CCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhh
Confidence            36899999997654333333     36778999988543    23332 3566666654  689999999999842  10


Q ss_pred             -----------cChHHHHHH----HHcC---CcEEEeccC--CCCCchHHHHHHHHHHhCC
Q 029854           99 -----------VKAKQVTFH----RKKN---LQYYEISAK--SNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        99 -----------~~~~~~~~~----~~~~---~~~~~~Sa~--~~~gi~~l~~~l~~~i~~~  139 (186)
                                 ..++..+.+    ...+   -+++.+|+.  .+.|+..+.+.+...+...
T Consensus       126 ~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~  186 (197)
T cd04104         126 RSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH  186 (197)
T ss_pred             ccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence                       011111111    2212   268999998  6789999999999888754

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PRK00007 elongation factor G; Reviewed

Probab=98.48  E-value=2.6e-07  Score=81.59  Aligned_cols=107  Identities=16%  Similarity=0.136  Sum_probs=68.4

Q ss_pred             ceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEe
Q 029854           11 IGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGN   90 (186)
Q Consensus        11 ig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~n   90 (186)
                      +.++.....+...  ..++.|+||||+..|.......++.+|++|+|+|+......+...- +..+..  .+.|+++++|
T Consensus        61 ~ti~~~~~~~~~~--~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~-~~~~~~--~~~p~iv~vN  135 (693)
T PRK00007         61 ITITSAATTCFWK--DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETV-WRQADK--YKVPRIAFVN  135 (693)
T ss_pred             CCEeccEEEEEEC--CeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHH-HHHHHH--cCCCEEEEEE
Confidence            3334444444444  4567778999998876666777889999999999987644443222 223333  3689999999


Q ss_pred             CCCCCCcccChHHHHHHHHcCC----cEEEeccCCC
Q 029854           91 KVDVKNRQVKAKQVTFHRKKNL----QYYEISAKSN  122 (186)
Q Consensus        91 K~Dl~~~~~~~~~~~~~~~~~~----~~~~~Sa~~~  122 (186)
                      |+|+.+.........+...++.    ..+.+|+..+
T Consensus       136 K~D~~~~~~~~~~~~i~~~l~~~~~~~~ipisa~~~  171 (693)
T PRK00007        136 KMDRTGADFYRVVEQIKDRLGANPVPIQLPIGAEDD  171 (693)
T ss_pred             CCCCCCCCHHHHHHHHHHHhCCCeeeEEecCccCCc
Confidence            9999864432222334344443    3567777766

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.48  E-value=5e-07  Score=71.74  Aligned_cols=90  Identities=19%  Similarity=0.204  Sum_probs=62.4

Q ss_pred             cccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCC
Q 029854           44 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNY  123 (186)
Q Consensus        44 ~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  123 (186)
                      ....++.||++|+|+|+..+.+.+.  .++....   .+.|+++|.||+|+.+..............+.+++.+||+++.
T Consensus        18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~---~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~vSa~~~~   92 (287)
T PRK09563         18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKII---GNKPRLLILNKSDLADPEVTKKWIEYFEEQGIKALAINAKKGQ   92 (287)
T ss_pred             HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh---CCCCEEEEEEchhcCCHHHHHHHHHHHHHcCCeEEEEECCCcc
Confidence            4556789999999999987755332  2222222   3689999999999964321111122223445678999999999


Q ss_pred             CchHHHHHHHHHHhC
Q 029854          124 NFEKPFLYLARKLAG  138 (186)
Q Consensus       124 gi~~l~~~l~~~i~~  138 (186)
                      |++++...+...+..
T Consensus        93 gi~~L~~~l~~~l~~  107 (287)
T PRK09563         93 GVKKILKAAKKLLKE  107 (287)
T ss_pred             cHHHHHHHHHHHHHH
Confidence            999999988877654

>PRK13796 GTPase YqeH; Provisional

Probab=98.47  E-value=1e-06  Score=72.23  Aligned_cols=83  Identities=20%  Similarity=0.287  Sum_probs=60.0

Q ss_pred             ccCc-EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChH-HHHH----HHHcCC---cEEEecc
Q 029854           49 IHGQ-CAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTF----HRKKNL---QYYEISA  119 (186)
Q Consensus        49 ~~ad-~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~-~~~~----~~~~~~---~~~~~Sa  119 (186)
                      ..++ .+++|+|+.+..     ..|...+.+...+.|+++|+||+|+.+.....+ ...|    ++..++   .++.+||
T Consensus        67 ~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSA  141 (365)
T PRK13796         67 GDSDALVVNVVDIFDFN-----GSWIPGLHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISA  141 (365)
T ss_pred             cccCcEEEEEEECccCC-----CchhHHHHHHhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEEC
Confidence            3444 999999998743     245666666556789999999999975433222 2223    445565   5899999


Q ss_pred             CCCCCchHHHHHHHHHH
Q 029854          120 KSNYNFEKPFLYLARKL  136 (186)
Q Consensus       120 ~~~~gi~~l~~~l~~~i  136 (186)
                      ++|.|++++++.+.+..
T Consensus       142 k~g~gI~eL~~~I~~~~  158 (365)
T PRK13796        142 QKGHGIDELLEAIEKYR  158 (365)
T ss_pred             CCCCCHHHHHHHHHHhc
Confidence            99999999999997653

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=98.46  E-value=5.8e-07  Score=77.75  Aligned_cols=103  Identities=24%  Similarity=0.268  Sum_probs=72.4

Q ss_pred             EEEEeCCCccccCCccccccccCcEEEEEEeCCCh---hhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCC-C------cc
Q 029854           29 FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK-N------RQ   98 (186)
Q Consensus        29 l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~---~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~-~------~~   98 (186)
                      +.++||||++.|.+++....+-||.+|+|+|+-..   .+.+.+    +.++.  .+.|+||+.||+|.. +      ..
T Consensus       542 ~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi----~lLR~--rktpFivALNKiDRLYgwk~~p~~~  615 (1064)
T KOG1144|consen  542 LLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESI----NLLRM--RKTPFIVALNKIDRLYGWKSCPNAP  615 (1064)
T ss_pred             eEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHH----HHHHh--cCCCeEEeehhhhhhcccccCCCch
Confidence            55779999999999999999999999999999653   343332    22222  489999999999963 1      11


Q ss_pred             -----------cChHH--------HHHHH-HcC-------------CcEEEeccCCCCCchHHHHHHHHHHh
Q 029854           99 -----------VKAKQ--------VTFHR-KKN-------------LQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus        99 -----------~~~~~--------~~~~~-~~~-------------~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                                 +..+.        .+|+. .++             +.++.+||.+|.||-+|+.+|+....
T Consensus       616 i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ  687 (1064)
T KOG1144|consen  616 IVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ  687 (1064)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence                       00010        12221 001             25789999999999999999987654

>PRK07560 elongation factor EF-2; Reviewed

Probab=98.43  E-value=9.2e-07  Score=78.63  Aligned_cols=83  Identities=23%  Similarity=0.155  Sum_probs=58.2

Q ss_pred             cceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEE
Q 029854           10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG   89 (186)
Q Consensus        10 Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~   89 (186)
                      |+.....+..+..++...++.|+||||+..|.......++.+|++|+|+|+...-..+...-|. .+..  .+.|.++++
T Consensus        70 Ti~~~~~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~-~~~~--~~~~~iv~i  146 (731)
T PRK07560         70 TIKAANVSMVHEYEGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLR-QALR--ERVKPVLFI  146 (731)
T ss_pred             hhhccceEEEEEecCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHH-HHHH--cCCCeEEEE
Confidence            3433333333344666788999999999998887888899999999999998754333222333 2222  257889999


Q ss_pred             eCCCCC
Q 029854           90 NKVDVK   95 (186)
Q Consensus        90 nK~Dl~   95 (186)
                      ||+|+.
T Consensus       147 NK~D~~  152 (731)
T PRK07560        147 NKVDRL  152 (731)
T ss_pred             ECchhh
Confidence            999975

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=98.43  E-value=2.4e-07  Score=63.59  Aligned_cols=114  Identities=17%  Similarity=0.051  Sum_probs=76.7

Q ss_pred             CccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCcc----ccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh
Q 029854            4 SVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR----DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV   79 (186)
Q Consensus         4 ~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~----~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~   79 (186)
                      ++-|.-|..++|..+-           .+||||...-+..|    -....+++++++|-.++++.|--.     ..+...
T Consensus        25 ~~lykKTQAve~~d~~-----------~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~-----p~f~~~   88 (148)
T COG4917          25 DTLYKKTQAVEFNDKG-----------DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFP-----PGFLDI   88 (148)
T ss_pred             hhhhcccceeeccCcc-----------ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCC-----cccccc
Confidence            3445556666665421           34999954333332    334568999999999999865211     111111


Q ss_pred             cCCCCEEEEEeCCCCCCcccChHHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHH
Q 029854           80 CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLAR  134 (186)
Q Consensus        80 ~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~  134 (186)
                       ...|+|-|++|.||++........+|..+-|. ++|++|+.++.|+++++..|..
T Consensus        89 -~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~  143 (148)
T COG4917          89 -GVKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQGVEELVDYLAS  143 (148)
T ss_pred             -cccceEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence             25679999999999864444445577777775 6999999999999999998874

>PRK09602 translation-associated GTPase; Reviewed

Probab=98.39  E-value=4.4e-06  Score=69.15  Aligned_cols=65  Identities=17%  Similarity=0.255  Sum_probs=46.1

Q ss_pred             CCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchH-HHHHHHHHHhCCCCcccccCC
Q 029854           82 NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK-PFLYLARKLAGDPNLHFVESP  148 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~-l~~~l~~~i~~~~~~~~~~~~  148 (186)
                      .+|+++|+||.|+.....  ....+....+..++.+||+.+.|+.+ +.+.+++.+...+.+......
T Consensus       217 ~KPvI~VlNK~D~~~~~~--~l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d~l  282 (396)
T PRK09602        217 SKPMVIAANKADLPPAEE--NIERLKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILGEL  282 (396)
T ss_pred             CCCEEEEEEchhcccchH--HHHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccccC
Confidence            389999999999753211  11222222345699999999999999 888888888888766555443

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=98.39  E-value=6.2e-06  Score=65.87  Aligned_cols=112  Identities=16%  Similarity=0.172  Sum_probs=75.0

Q ss_pred             EEEEeCCCcccc----CCccccccc---cCcEEEEEEeCCChh---hHHhHHHHHHHHHhhc---CCCCEEEEEeCCCCC
Q 029854           29 FYCWDTAGQEKF----GGLRDGYYI---HGQCAIIMFDVTARL---TYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVK   95 (186)
Q Consensus        29 l~l~Dt~G~~~~----~~~~~~~~~---~ad~vilv~D~~~~~---s~~~i~~~~~~~~~~~---~~~p~ilv~nK~Dl~   95 (186)
                      +.+=|.||.-.-    ..+...|++   .+.+.+.|+|++..+   ..++......++..+.   .+.|.+||+||+|+.
T Consensus       209 fv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~  288 (369)
T COG0536         209 FVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLP  288 (369)
T ss_pred             EEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCC
Confidence            445599996432    224445544   689999999998654   2444455555555553   589999999999976


Q ss_pred             CcccChH--HHHHHHHcCCcEE-EeccCCCCCchHHHHHHHHHHhCCC
Q 029854           96 NRQVKAK--QVTFHRKKNLQYY-EISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus        96 ~~~~~~~--~~~~~~~~~~~~~-~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                      ......+  ...+.+..+...+ .+||.++.|++++...+.+.+.+..
T Consensus       289 ~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         289 LDEEELEELKKALAEALGWEVFYLISALTREGLDELLRALAELLEETK  336 (369)
T ss_pred             cCHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHHhh
Confidence            4332222  2234444444322 2999999999999999999887765

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=98.38  E-value=1.7e-06  Score=72.14  Aligned_cols=115  Identities=13%  Similarity=0.087  Sum_probs=81.3

Q ss_pred             CeEEEEEEEeCCCcccc----CCccccc----c-ccCcEEEEEEeCCChh--hHHhHHHHHHHHHhhcCCCCEEEEEeCC
Q 029854           24 CGKIRFYCWDTAGQEKF----GGLRDGY----Y-IHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVCENIPIVLCGNKV   92 (186)
Q Consensus        24 ~~~~~l~l~Dt~G~~~~----~~~~~~~----~-~~ad~vilv~D~~~~~--s~~~i~~~~~~~~~~~~~~p~ilv~nK~   92 (186)
                      -+-.+++.+||||....    ++...+.    + .=-.+|++++|++...  |..+--..+..+.-.+.+.|.|+|.||+
T Consensus       212 ykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~  291 (620)
T KOG1490|consen  212 YKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKI  291 (620)
T ss_pred             hheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecc
Confidence            34578889999996442    1111111    1 1236799999999865  4455456778888888899999999999


Q ss_pred             CCCC-cccChHHH----HHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           93 DVKN-RQVKAKQV----TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        93 Dl~~-~~~~~~~~----~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      |+.. ....++..    .+....+++++++|+.+.+||.++-...+..++.
T Consensus       292 D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~LLa  342 (620)
T KOG1490|consen  292 DAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQEEGVMDVRTTACEALLA  342 (620)
T ss_pred             cccCccccCHHHHHHHHHHHhccCceEEEecccchhceeeHHHHHHHHHHH
Confidence            9874 33444432    3334445899999999999999988888877754

>COG0218 Predicted GTPase [General function prediction only]

Probab=98.37  E-value=7.4e-06  Score=60.94  Aligned_cols=105  Identities=14%  Similarity=0.158  Sum_probs=70.6

Q ss_pred             EEEEeCCC----------ccccCCcccccccc---CcEEEEEEeCCChhhHHh--HHHHHHHHHhhcCCCCEEEEEeCCC
Q 029854           29 FYCWDTAG----------QEKFGGLRDGYYIH---GQCAIIMFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVD   93 (186)
Q Consensus        29 l~l~Dt~G----------~~~~~~~~~~~~~~---ad~vilv~D~~~~~s~~~--i~~~~~~~~~~~~~~p~ilv~nK~D   93 (186)
                      +.|.|.||          ++.+..+...|+..   -.++++++|+.....-.+  +..|+..     .+.|++|++||+|
T Consensus        72 ~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~-----~~i~~~vv~tK~D  146 (200)
T COG0218          72 LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLE-----LGIPVIVVLTKAD  146 (200)
T ss_pred             EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHH-----cCCCeEEEEEccc
Confidence            67789999          23444455666653   578999999987655432  2344433     3799999999999


Q ss_pred             CCCcccChHHH-HHHHHcC----Cc--EEEeccCCCCCchHHHHHHHHHHhC
Q 029854           94 VKNRQVKAKQV-TFHRKKN----LQ--YYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        94 l~~~~~~~~~~-~~~~~~~----~~--~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      ........+.. ..+...+    ..  ++.+|+.++.|++++...|...+..
T Consensus       147 Ki~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         147 KLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             cCChhHHHHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence            87543332222 2222222    22  7889999999999999999887753

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=98.35  E-value=4.3e-06  Score=70.70  Aligned_cols=117  Identities=18%  Similarity=0.149  Sum_probs=77.5

Q ss_pred             eEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChh---hHHhHHH--HHHHHHhhcCCCCEE
Q 029854           12 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYKNVPT--WHRDLCRVCENIPIV   86 (186)
Q Consensus        12 g~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~---s~~~i~~--~~~~~~~~~~~~p~i   86 (186)
                      |+.....+..++.....+.|.|+||+..|..-.-.-...||+.+||+|++-..   +|+.-.+  -+..+.+...-.-++
T Consensus       240 GvTm~v~~~~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qli  319 (603)
T KOG0458|consen  240 GVTMDVKTTWFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLI  319 (603)
T ss_pred             ceeEEeeeEEEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEE
Confidence            34444445555677788899999999999887777788899999999998632   3331111  122233333456799


Q ss_pred             EEEeCCCCCCcc------cChHHHHHH-HHcC-----CcEEEeccCCCCCchHH
Q 029854           87 LCGNKVDVKNRQ------VKAKQVTFH-RKKN-----LQYYEISAKSNYNFEKP  128 (186)
Q Consensus        87 lv~nK~Dl~~~~------~~~~~~~~~-~~~~-----~~~~~~Sa~~~~gi~~l  128 (186)
                      |++||+|+.+..      +..+..-+. +..|     +.++.||+.+|+|+-..
T Consensus       320 vaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  320 VAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             EEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            999999998622      222222333 3333     47999999999997654

>TIGR00101 ureG urease accessory protein UreG

Probab=98.35  E-value=2.9e-06  Score=63.87  Aligned_cols=99  Identities=12%  Similarity=0.073  Sum_probs=62.2

Q ss_pred             EEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCE--EEEEeCCCCCCccc--ChH
Q 029854           27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI--VLCGNKVDVKNRQV--KAK  102 (186)
Q Consensus        27 ~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~--ilv~nK~Dl~~~~~--~~~  102 (186)
                      ....+.+|.|..-..... ..  -++++|.|+|+.+..+...  .+..       ....  ++++||+|+.+...  ...
T Consensus        92 ~D~iiIEt~G~~l~~~~~-~~--l~~~~i~vvD~~~~~~~~~--~~~~-------qi~~ad~~~~~k~d~~~~~~~~~~~  159 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFS-PE--LADLTIFVIDVAAGDKIPR--KGGP-------GITRSDLLVINKIDLAPMVGADLGV  159 (199)
T ss_pred             CCEEEEECCCCCcccccc-hh--hhCcEEEEEEcchhhhhhh--hhHh-------HhhhccEEEEEhhhccccccccHHH
Confidence            445566888842212221 12  2688999999997655321  1111       2333  78899999974211  111


Q ss_pred             HHHHHHH--cCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854          103 QVTFHRK--KNLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus       103 ~~~~~~~--~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                      ..+..+.  .+.+++++||++|.|++++|+++.+.+.
T Consensus       160 ~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       160 MERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             HHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            2233333  3478999999999999999999997654

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.33  E-value=2.3e-06  Score=69.12  Aligned_cols=104  Identities=11%  Similarity=0.000  Sum_probs=67.5

Q ss_pred             EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChH---
Q 029854           26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK---  102 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~---  102 (186)
                      .+.+.|+||+|...-..   .....||.+++|.+....+..+.+.   ..+.+    ..-++|+||+|+.+......   
T Consensus       148 g~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E----~aDIiVVNKaDl~~~~~a~~~~~  217 (332)
T PRK09435        148 GYDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIK---KGIME----LADLIVINKADGDNKTAARRAAA  217 (332)
T ss_pred             CCCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHH---hhhhh----hhheEEeehhcccchhHHHHHHH
Confidence            46778889999763222   2466799999998755444443322   22222    23489999999875331111   


Q ss_pred             -HHHHHHH-------cCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854          103 -QVTFHRK-------KNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus       103 -~~~~~~~-------~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                       .......       +..+++.+||++|.||+++++.+.+++...
T Consensus       218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l  262 (332)
T PRK09435        218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAAL  262 (332)
T ss_pred             HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence             1111111       225799999999999999999999988633

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=98.33  E-value=6e-07  Score=67.99  Aligned_cols=86  Identities=29%  Similarity=0.412  Sum_probs=64.7

Q ss_pred             cccceEEEEEEEEEECCeEEEEEEEeCCCcccc-----CCccccccccCcEEEEEEeCCChhhHHhHH---HHHHHHHhh
Q 029854            8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-----GGLRDGYYIHGQCAIIMFDVTARLTYKNVP---TWHRDLCRV   79 (186)
Q Consensus         8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-----~~~~~~~~~~ad~vilv~D~~~~~s~~~i~---~~~~~~~~~   79 (186)
                      .+||.++-.+.++-   +++.+.+||.+||+.+     .......+++.+++|+|||+...+--.++.   .-++.+.+.
T Consensus        37 g~tidveHsh~Rfl---Gnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~  113 (295)
T KOG3886|consen   37 GATIDVEHSHVRFL---GNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQN  113 (295)
T ss_pred             CCcceeeehhhhhh---hhheeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhc
Confidence            46777777666665   6789999999999843     335667889999999999998875333333   344555666


Q ss_pred             cCCCCEEEEEeCCCCCC
Q 029854           80 CENIPIVLCGNKVDVKN   96 (186)
Q Consensus        80 ~~~~p~ilv~nK~Dl~~   96 (186)
                      .+...+.+...|+|+..
T Consensus       114 SP~AkiF~l~hKmDLv~  130 (295)
T KOG3886|consen  114 SPEAKIFCLLHKMDLVQ  130 (295)
T ss_pred             CCcceEEEEEeechhcc
Confidence            67888999999999974

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=98.27  E-value=1.6e-05  Score=63.16  Aligned_cols=109  Identities=18%  Similarity=0.092  Sum_probs=73.3

Q ss_pred             CeEEEEEEEeCCCccccC-------CccccccccCcEEEEEEeCCChhh-HHhHHHHHHH--------------------
Q 029854           24 CGKIRFYCWDTAGQEKFG-------GLRDGYYIHGQCAIIMFDVTARLT-YKNVPTWHRD--------------------   75 (186)
Q Consensus        24 ~~~~~l~l~Dt~G~~~~~-------~~~~~~~~~ad~vilv~D~~~~~s-~~~i~~~~~~--------------------   75 (186)
                      -+..++||.|+||.-.-.       ...-..+++||++++|+|+....+ .+-+.+-++.                    
T Consensus       107 Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~g  186 (365)
T COG1163         107 YKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESG  186 (365)
T ss_pred             ecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccC
Confidence            356788999999853322       234456789999999999987655 3223222221                    


Q ss_pred             --------------------HHhhc--------------------------CCCCEEEEEeCCCCCCcccChHHHHHHHH
Q 029854           76 --------------------LCRVC--------------------------ENIPIVLCGNKVDVKNRQVKAKQVTFHRK  109 (186)
Q Consensus        76 --------------------~~~~~--------------------------~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~  109 (186)
                                          +.+.+                          .-+|.++|.||+|+...   ++...+.+.
T Consensus       187 GI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~---e~~~~l~~~  263 (365)
T COG1163         187 GIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL---EELERLARK  263 (365)
T ss_pred             CEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCH---HHHHHHHhc
Confidence                                11100                          01599999999998752   222233333


Q ss_pred             cCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854          110 KNLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus       110 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                      .  .++.+||++|.|++++.+.+.+.+.
T Consensus       264 ~--~~v~isa~~~~nld~L~e~i~~~L~  289 (365)
T COG1163         264 P--NSVPISAKKGINLDELKERIWDVLG  289 (365)
T ss_pred             c--ceEEEecccCCCHHHHHHHHHHhhC
Confidence            2  7999999999999999999998874

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.26  E-value=2.5e-06  Score=70.53  Aligned_cols=85  Identities=21%  Similarity=0.275  Sum_probs=57.7

Q ss_pred             ccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhh----------HHhHHHHHHHH
Q 029854            7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT----------YKNVPTWHRDL   76 (186)
Q Consensus         7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s----------~~~i~~~~~~~   76 (186)
                      +.+|.|+.-.  .+.+. ....+.++|+|||...+.-|..++.++++||||+++++.+-          +.+....++.+
T Consensus       219 r~~T~Gi~e~--~f~~~-~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i  295 (389)
T PF00503_consen  219 RVKTTGITEI--DFNFS-GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESI  295 (389)
T ss_dssp             ----SSEEEE--EEEE--TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHH
T ss_pred             cCCCCCeeEE--EEEee-cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHH
Confidence            3567776544  44431 44567788999999999999999999999999999875432          23323344444


Q ss_pred             Hhh--cCCCCEEEEEeCCCC
Q 029854           77 CRV--CENIPIVLCGNKVDV   94 (186)
Q Consensus        77 ~~~--~~~~p~ilv~nK~Dl   94 (186)
                      .+.  ..+.|++|+.||+|+
T Consensus       296 ~~~~~~~~~~iil~lnK~D~  315 (389)
T PF00503_consen  296 CNNPWFKNTPIILFLNKIDL  315 (389)
T ss_dssp             HTSGGGTTSEEEEEEE-HHH
T ss_pred             HhCcccccCceEEeeecHHH
Confidence            443  268999999999996

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=98.26  E-value=4.6e-06  Score=68.57  Aligned_cols=101  Identities=21%  Similarity=0.246  Sum_probs=68.9

Q ss_pred             eEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCCCEEEEE
Q 029854           12 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCG   89 (186)
Q Consensus        12 g~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~p~ilv~   89 (186)
                      |+.+.+..++.+.....+.|.||||++.|..-.=..+.-+|.+|+|+|+...-.-+.     .++.+.|  .++|++-.+
T Consensus        66 GISVtsSVMqF~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-----~KLfeVcrlR~iPI~TFi  140 (528)
T COG4108          66 GISVTSSVMQFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-----LKLFEVCRLRDIPIFTFI  140 (528)
T ss_pred             CceEEeeEEEeccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHH-----HHHHHHHhhcCCceEEEe
Confidence            444555555555566677788999999998766666777999999999987532221     2233333  589999999


Q ss_pred             eCCCCCCcccChHHHHHHHHcCCcEEEe
Q 029854           90 NKVDVKNRQVKAKQVTFHRKKNLQYYEI  117 (186)
Q Consensus        90 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  117 (186)
                      ||.|...+...+-.-+..+++++.+..+
T Consensus       141 NKlDR~~rdP~ELLdEiE~~L~i~~~Pi  168 (528)
T COG4108         141 NKLDREGRDPLELLDEIEEELGIQCAPI  168 (528)
T ss_pred             eccccccCChHHHHHHHHHHhCcceecc
Confidence            9999876655444445556666655443

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.25  E-value=5.5e-06  Score=68.10  Aligned_cols=124  Identities=14%  Similarity=0.001  Sum_probs=82.7

Q ss_pred             cccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEE
Q 029854            8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVL   87 (186)
Q Consensus         8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~il   87 (186)
                      ..|+...|+....    ....+.|+|+||.+++-...-..+...|+++||+|.++.-..+....  -.+.........++
T Consensus        35 G~TiDlg~~y~~~----~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEh--L~iLdllgi~~gii  108 (447)
T COG3276          35 GITIDLGFYYRKL----EDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEH--LLILDLLGIKNGII  108 (447)
T ss_pred             CceEeeeeEeccC----CCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHH--HHHHHhcCCCceEE
Confidence            3456555655444    44488899999999886666666778999999999976433222111  11222233456799


Q ss_pred             EEeCCCCCCcc-cChHHHHHHHHc---CCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854           88 CGNKVDVKNRQ-VKAKQVTFHRKK---NLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus        88 v~nK~Dl~~~~-~~~~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                      |.||+|..+.. +.+...+.....   +.+++.+|+++|.||+++-+.|.....
T Consensus       109 vltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~  162 (447)
T COG3276         109 VLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE  162 (447)
T ss_pred             EEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence            99999998532 222222222222   367899999999999999999998773

>PRK01889 GTPase RsgA; Reviewed

Probab=98.23  E-value=7.2e-06  Score=67.06  Aligned_cols=83  Identities=10%  Similarity=0.089  Sum_probs=59.5

Q ss_pred             cccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHHH-HcCCcEEEeccCCCCCch
Q 029854           48 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR-KKNLQYYEISAKSNYNFE  126 (186)
Q Consensus        48 ~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~  126 (186)
                      +.++|.+++|+++...-+...+.+++..+...  +.|.+||.||+||.+... .....+.. ..+++++.+|+++|.|++
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~--~i~piIVLNK~DL~~~~~-~~~~~~~~~~~g~~Vi~vSa~~g~gl~  186 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES--GAEPVIVLTKADLCEDAE-EKIAEVEALAPGVPVLAVSALDGEGLD  186 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc--CCCEEEEEEChhcCCCHH-HHHHHHHHhCCCCcEEEEECCCCccHH
Confidence            68899999999997544555566666665553  678899999999975311 11112221 346789999999999999


Q ss_pred             HHHHHHH
Q 029854          127 KPFLYLA  133 (186)
Q Consensus       127 ~l~~~l~  133 (186)
                      ++...+.
T Consensus       187 ~L~~~L~  193 (356)
T PRK01889        187 VLAAWLS  193 (356)
T ss_pred             HHHHHhh
Confidence            9888874

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.22  E-value=1.3e-06  Score=67.57  Aligned_cols=106  Identities=13%  Similarity=0.132  Sum_probs=56.7

Q ss_pred             EEEEEeCCCccccCCcccccc--------ccCcEEEEEEeCCChh---hHHhHHHHHHHHHh-hcCCCCEEEEEeCCCCC
Q 029854           28 RFYCWDTAGQEKFGGLRDGYY--------IHGQCAIIMFDVTARL---TYKNVPTWHRDLCR-VCENIPIVLCGNKVDVK   95 (186)
Q Consensus        28 ~l~l~Dt~G~~~~~~~~~~~~--------~~ad~vilv~D~~~~~---s~~~i~~~~~~~~~-~~~~~p~ilv~nK~Dl~   95 (186)
                      .+.|+|||||-++...|...-        ...-++++++|+....   +|-.  .++-...- ...+.|.|.|.||+|+.
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s--~~L~s~s~~~~~~lP~vnvlsK~Dl~  169 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVS--SLLLSLSIMLRLELPHVNVLSKIDLL  169 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHH--HHHHHHHHHHHHTSEEEEEE--GGGS
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHH--HHHHHHHHHhhCCCCEEEeeeccCcc
Confidence            566889999987655544333        5678999999996433   3322  22222221 12379999999999997


Q ss_pred             CcccChHH------------------H----HHHH---HcC-C-cEEEeccCCCCCchHHHHHHHHHH
Q 029854           96 NRQVKAKQ------------------V----TFHR---KKN-L-QYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        96 ~~~~~~~~------------------~----~~~~---~~~-~-~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      +.. ....                  .    .++.   .++ . +++.+|+.++.|+.+++..+-+.+
T Consensus       170 ~~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  170 SKY-LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             -HH-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             cch-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            622 0000                  0    1111   112 3 699999999999999998876654

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=98.20  E-value=2.5e-05  Score=66.21  Aligned_cols=131  Identities=14%  Similarity=0.089  Sum_probs=91.7

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN   82 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~   82 (186)
                      ++..+..|.+..+........|....+.|-|.+-. ....+...- ..+|+++++||++++.||..+....+..... ..
T Consensus       450 ~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~-~~  526 (625)
T KOG1707|consen  450 MSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVACLVYDSSNPRSFEYLAEVYNKYFDL-YK  526 (625)
T ss_pred             cccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEEEecccCCchHHHHHHHHHHHhhhc-cC
Confidence            34466677777776666666677777778788755 333333333 7799999999999999999876655444333 57


Q ss_pred             CCEEEEEeCCCCCCcc---cChHHHHHHHHcCCc-EEEeccCCCCCchHHHHHHHHHHhC
Q 029854           83 IPIVLCGNKVDVKNRQ---VKAKQVTFHRKKNLQ-YYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        83 ~p~ilv~nK~Dl~~~~---~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      .|+++|++|+|+.+..   ..+. -+++.+++++ -+.+|.++... .++|..|+.....
T Consensus       527 ~Pc~~va~K~dlDe~~Q~~~iqp-de~~~~~~i~~P~~~S~~~~~s-~~lf~kL~~~A~~  584 (625)
T KOG1707|consen  527 IPCLMVATKADLDEVPQRYSIQP-DEFCRQLGLPPPIHISSKTLSS-NELFIKLATMAQY  584 (625)
T ss_pred             CceEEEeeccccchhhhccCCCh-HHHHHhcCCCCCeeeccCCCCC-chHHHHHHHhhhC
Confidence            9999999999997533   1122 5788888875 56667664222 7899988876643

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=98.18  E-value=9.3e-07  Score=60.63  Aligned_cols=79  Identities=18%  Similarity=0.183  Sum_probs=57.6

Q ss_pred             cCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEec
Q 029854           40 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEIS  118 (186)
Q Consensus        40 ~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S  118 (186)
                      +..+...++++++++++||+.++..+++.+  |...+.... .+.|.++++||.|+.+..      .++...+..++++|
T Consensus        36 ~~~~~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~------~~~~~~~~~~~~~s  107 (124)
T smart00010       36 IDVYDPTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEER------QVATEEGLEFAETS  107 (124)
T ss_pred             hhhccccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhC------cCCHHHHHHHHHHh
Confidence            444556678899999999999999998765  877766543 468899999999984321      11222234567889


Q ss_pred             cCCCCCch
Q 029854          119 AKSNYNFE  126 (186)
Q Consensus       119 a~~~~gi~  126 (186)
                      +++|.|+.
T Consensus       108 ~~~~~~~~  115 (124)
T smart00010      108 AKTPEEGE  115 (124)
T ss_pred             CCCcchhh
Confidence            99999984

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=98.17  E-value=8.3e-06  Score=63.46  Aligned_cols=112  Identities=14%  Similarity=0.162  Sum_probs=66.6

Q ss_pred             EEEEEEEeCCCccccCC------cc-cccc-ccCcEEEEEEeCCC---hhhHHh-HHHHHHHHHhhcCCCCEEEEEeCCC
Q 029854           26 KIRFYCWDTAGQEKFGG------LR-DGYY-IHGQCAIIMFDVTA---RLTYKN-VPTWHRDLCRVCENIPIVLCGNKVD   93 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~------~~-~~~~-~~ad~vilv~D~~~---~~s~~~-i~~~~~~~~~~~~~~p~ilv~nK~D   93 (186)
                      ....-|+|||||-.--.      +. ..+. ..--++++++|...   +.+|=. +-.....+.  ....|+|++.||+|
T Consensus       115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSily--ktklp~ivvfNK~D  192 (366)
T KOG1532|consen  115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILY--KTKLPFIVVFNKTD  192 (366)
T ss_pred             ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHH--hccCCeEEEEeccc
Confidence            35566789999854211      11 1111 23567888888744   334432 111111111  14799999999999


Q ss_pred             CCCcccC------hHHH-HHHH-------------------H--cCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           94 VKNRQVK------AKQV-TFHR-------------------K--KNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        94 l~~~~~~------~~~~-~~~~-------------------~--~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      +.+...-      -+.. +...                   +  .++..+.+|+.+|.|.+++|..+-..+.+.
T Consensus       193 v~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy  266 (366)
T KOG1532|consen  193 VSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY  266 (366)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence            9763210      0100 0001                   0  135689999999999999999998888664

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=98.17  E-value=2.1e-05  Score=59.40  Aligned_cols=99  Identities=13%  Similarity=0.103  Sum_probs=60.3

Q ss_pred             EEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCccc--ChHHH
Q 029854           27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KAKQV  104 (186)
Q Consensus        27 ~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--~~~~~  104 (186)
                      ..+.|.+|.|.-..   ...+....+..+.|+|+.+.+...  ......     ...|.++++||+|+.+...  ..+..
T Consensus       103 ~d~IiIEt~G~l~~---~~~~~~~~~~~i~Vvd~~~~d~~~--~~~~~~-----~~~a~iiv~NK~Dl~~~~~~~~~~~~  172 (207)
T TIGR00073       103 IDLLFIENVGNLVC---PADFDLGEHMRVVLLSVTEGDDKP--LKYPGM-----FKEADLIVINKADLAEAVGFDVEKMK  172 (207)
T ss_pred             CCEEEEecCCCcCC---CcccccccCeEEEEEecCcccchh--hhhHhH-----HhhCCEEEEEHHHccccchhhHHHHH
Confidence            35567788772110   111223456667888887654211  111111     1467899999999975321  12223


Q ss_pred             HHHHHcC--CcEEEeccCCCCCchHHHHHHHHH
Q 029854          105 TFHRKKN--LQYYEISAKSNYNFEKPFLYLARK  135 (186)
Q Consensus       105 ~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~  135 (186)
                      ...++.+  .+++.+||++|.|++++|+++.+.
T Consensus       173 ~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       173 ADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             HHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3333333  789999999999999999999875

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>COG3596 Predicted GTPase [General function prediction only]

Probab=98.16  E-value=8.9e-06  Score=63.27  Aligned_cols=113  Identities=14%  Similarity=0.172  Sum_probs=79.6

Q ss_pred             EEEEEEeCCCccc-------cCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCc--
Q 029854           27 IRFYCWDTAGQEK-------FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR--   97 (186)
Q Consensus        27 ~~l~l~Dt~G~~~-------~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~--   97 (186)
                      =.+.||||||.+.       |+.....++...|.++++.++.++.---+ ...+..+...+-+.++++++|.+|....  
T Consensus        87 ~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~  165 (296)
T COG3596          87 ENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTD-EDFLRDVIILGLDKRVLFVVTQADRAEPGR  165 (296)
T ss_pred             cceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCC-HHHHHHHHHhccCceeEEEEehhhhhcccc
Confidence            4688999999765       66677788899999999999998752112 2344555555556899999999997532  


Q ss_pred             -------ccChHHHHHHHHc----------CCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029854           98 -------QVKAKQVTFHRKK----------NLQYYEISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus        98 -------~~~~~~~~~~~~~----------~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                             .......++..+.          -.|++.+|...+-|++.+...++..+....
T Consensus       166 ~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~  225 (296)
T COG3596         166 EWDSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALPVEA  225 (296)
T ss_pred             ccccccCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCcccc
Confidence                   1222222222111          136888889999999999999999997443

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=98.14  E-value=1.1e-05  Score=70.94  Aligned_cols=76  Identities=18%  Similarity=0.210  Sum_probs=58.7

Q ss_pred             EEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcc
Q 029854           19 DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ   98 (186)
Q Consensus        19 ~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~   98 (186)
                      ++.+.+ .+++.|+||||+-.|..-....++-+|++|+|+|+...-..+.-.-|.+....   ++|.+++.||+|.....
T Consensus        69 s~~~~~-~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~---~vp~i~fiNKmDR~~a~  144 (697)
T COG0480          69 TLFWKG-DYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY---GVPRILFVNKMDRLGAD  144 (697)
T ss_pred             EEEEcC-ceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhc---CCCeEEEEECccccccC
Confidence            333343 57888899999999999999999999999999999886554444445444333   79999999999987543

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=98.11  E-value=6.1e-06  Score=74.47  Aligned_cols=68  Identities=18%  Similarity=0.150  Sum_probs=53.4

Q ss_pred             eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 029854           25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK   95 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~   95 (186)
                      ..+.+.|+||||+..|.......++.+|++|+|+|+...-......-|.. +..  .++|+++++||+|+.
T Consensus        96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~-~~~--~~~p~i~~iNK~D~~  163 (843)
T PLN00116         96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG--ERIRPVLTVNKMDRC  163 (843)
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHH-HHH--CCCCEEEEEECCccc
Confidence            46788999999999998877888899999999999997654443333332 322  378999999999987

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=98.10  E-value=1.5e-05  Score=66.40  Aligned_cols=126  Identities=14%  Similarity=0.102  Sum_probs=79.3

Q ss_pred             EEEEEEEEEECCeEEEEEEEeCCCcccc-CC--------ccccccccCcEEEEEEeC--CChhhHHhHHHHHHHHHhhc-
Q 029854           13 VEVHPLDFFTNCGKIRFYCWDTAGQEKF-GG--------LRDGYYIHGQCAIIMFDV--TARLTYKNVPTWHRDLCRVC-   80 (186)
Q Consensus        13 ~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-~~--------~~~~~~~~ad~vilv~D~--~~~~s~~~i~~~~~~~~~~~-   80 (186)
                      -|.....++++|.++.|.  ||+|...- ..        ..+..+..||++++|+|+  ++-.+-..+...++....-+ 
T Consensus       304 RDaiea~v~~~G~~v~L~--DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~  381 (531)
T KOG1191|consen  304 RDAIEAQVTVNGVPVRLS--DTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLV  381 (531)
T ss_pred             hhhheeEeecCCeEEEEE--eccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceE
Confidence            455566677788777665  99997762 11        123456789999999999  44333333333333332211 


Q ss_pred             ------CCCCEEEEEeCCCCCCc--ccChHHHHHHHHc---CCc-EEEeccCCCCCchHHHHHHHHHHhCCC
Q 029854           81 ------ENIPIVLCGNKVDVKNR--QVKAKQVTFHRKK---NLQ-YYEISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus        81 ------~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~---~~~-~~~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                            ...|++++.||.|+...  ........+....   ..+ ..++|+++++|++++...+...+....
T Consensus       382 ~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~  453 (531)
T KOG1191|consen  382 VIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVERLV  453 (531)
T ss_pred             EEeccccccceEEEechhhccCccccccCCceeccccccCcccceEEEeeechhhhHHHHHHHHHHHHHHhh
Confidence                  24799999999999754  1111111111111   234 456999999999999999998887654

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=98.09  E-value=0.00012  Score=54.76  Aligned_cols=112  Identities=8%  Similarity=-0.054  Sum_probs=69.8

Q ss_pred             EEEEEEeCCCccccCCc-----------cccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC---CCCEEEEEeCC
Q 029854           27 IRFYCWDTAGQEKFGGL-----------RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNKV   92 (186)
Q Consensus        27 ~~l~l~Dt~G~~~~~~~-----------~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~---~~p~ilv~nK~   92 (186)
                      ..+.++||||.......           ......++|++|+|+++.+ .+-.+ ...++.+.+.+.   -.+++++.|++
T Consensus        49 ~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~  126 (196)
T cd01852          49 RRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRG  126 (196)
T ss_pred             eEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECc
Confidence            36778899996544211           1223467899999999987 33222 233444444332   36889999999


Q ss_pred             CCCCcc--------cChHHHHHHHHcCCcEEEec-----cCCCCCchHHHHHHHHHHhCCC
Q 029854           93 DVKNRQ--------VKAKQVTFHRKKNLQYYEIS-----AKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus        93 Dl~~~~--------~~~~~~~~~~~~~~~~~~~S-----a~~~~gi~~l~~~l~~~i~~~~  140 (186)
                      |.....        .......+....+-.|+.++     +..+.++.++++.+.+.+.+..
T Consensus       127 d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~  187 (196)
T cd01852         127 DDLEGGTLEDYLENSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVESMVKENG  187 (196)
T ss_pred             cccCCCcHHHHHHhccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHHHHHHhcC
Confidence            975432        11222344455555565554     4567789999999999888744

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.07  E-value=1e-05  Score=64.62  Aligned_cols=102  Identities=10%  Similarity=-0.003  Sum_probs=65.2

Q ss_pred             EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChH---
Q 029854           26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK---  102 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~---  102 (186)
                      .+.+.|.||+|....   ....+..+|.++++.+...   -+++..+...+    ...|.+++.||+|+.+......   
T Consensus       126 g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~~---~~el~~~~~~l----~~~~~ivv~NK~Dl~~~~~~~~~~~  195 (300)
T TIGR00750       126 GYDVIIVETVGVGQS---EVDIANMADTFVVVTIPGT---GDDLQGIKAGL----MEIADIYVVNKADGEGATNVTIARL  195 (300)
T ss_pred             CCCEEEEeCCCCchh---hhHHHHhhceEEEEecCCc---cHHHHHHHHHH----hhhccEEEEEcccccchhHHHHHHH
Confidence            567788899985421   1235667888888854432   23333333333    2578899999999975432110   


Q ss_pred             H-----HHHHHH---cCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854          103 Q-----VTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus       103 ~-----~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                      .     ..+..+   ++.+++.+||++|.|+++++.++.+.+.
T Consensus       196 ~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       196 MLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence            0     011111   2246999999999999999999998754

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.04  E-value=1.3e-05  Score=63.67  Aligned_cols=112  Identities=14%  Similarity=0.103  Sum_probs=72.9

Q ss_pred             EEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChH----
Q 029854           27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK----  102 (186)
Q Consensus        27 ~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~----  102 (186)
                      -++.|.|.||++-.....-+-..=-|+.+||+.++.+..-=+.+.-+- ..+...-..+|++-||+|+..+..-.+    
T Consensus        86 R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~-AleIigik~iiIvQNKIDlV~~E~AlE~y~q  164 (415)
T COG5257          86 RRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLM-ALEIIGIKNIIIVQNKIDLVSRERALENYEQ  164 (415)
T ss_pred             EEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHH-HHhhhccceEEEEecccceecHHHHHHHHHH
Confidence            467788999998754433333333599999999987542111111111 111123467999999999975432222    


Q ss_pred             HHHHHHHc---CCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854          103 QVTFHRKK---NLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus       103 ~~~~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      ..+|.+.-   +.+++.+||..+.||+-+++.+.+.+...
T Consensus       165 Ik~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP  204 (415)
T COG5257         165 IKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTP  204 (415)
T ss_pred             HHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence            22343322   46899999999999999999999998654

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=98.04  E-value=2.2e-05  Score=46.53  Aligned_cols=43  Identities=14%  Similarity=0.352  Sum_probs=30.8

Q ss_pred             CcEEEEEEeCCChh--hHHhHHHHHHHHHhhcCCCCEEEEEeCCC
Q 029854           51 GQCAIIMFDVTARL--TYKNVPTWHRDLCRVCENIPIVLCGNKVD   93 (186)
Q Consensus        51 ad~vilv~D~~~~~--s~~~i~~~~~~~~~~~~~~p~ilv~nK~D   93 (186)
                      +++++|++|+|...  |.++-...++.++...++.|+++|.||+|
T Consensus        14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID   58 (58)
T ss_dssp             -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred             cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence            68999999999865  45555677888888888999999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=98.02  E-value=6.4e-05  Score=63.46  Aligned_cols=135  Identities=20%  Similarity=0.263  Sum_probs=95.8

Q ss_pred             ccccccceEEEEEEEEEEC--CeEEEEEEEeCCCccccCCcccccccc----CcEEEEEEeCCChhhH-HhHHHHHHHHH
Q 029854            5 VWGKATIGVEVHPLDFFTN--CGKIRFYCWDTAGQEKFGGLRDGYYIH----GQCAIIMFDVTARLTY-KNVPTWHRDLC   77 (186)
Q Consensus         5 ~~~~~Tig~~~~~~~~~~~--~~~~~l~l~Dt~G~~~~~~~~~~~~~~----ad~vilv~D~~~~~s~-~~i~~~~~~~~   77 (186)
                      .++.+|.|.+|....+.-+  ....++.+|-.+|...+..+.+..+..    --++|+|.|.+.+..+ +++..|+..+.
T Consensus        49 e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~  128 (472)
T PF05783_consen   49 EDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNTLVVIVLDLSKPWNIMESLEKWLSVLR  128 (472)
T ss_pred             CCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccceEEEEEecCCChHHHHHHHHHHHHHHH
Confidence            4577899999987765432  234789999998877777776665553    3688999999998754 34555544321


Q ss_pred             h-------------------------hc-----C---------------------------------CCCEEEEEeCCCC
Q 029854           78 R-------------------------VC-----E---------------------------------NIPIVLCGNKVDV   94 (186)
Q Consensus        78 ~-------------------------~~-----~---------------------------------~~p~ilv~nK~Dl   94 (186)
                      .                         +.     .                                 ++|++||++|+|.
T Consensus       129 ~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~~lpl~~g~l~~nlGipi~VV~tksD~  208 (472)
T PF05783_consen  129 EHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESVLLPLGEGVLTENLGIPIVVVCTKSDK  208 (472)
T ss_pred             HHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccccCCCCCcccccccCcceEEEEecccH
Confidence            1                         10     0                                 1599999999997


Q ss_pred             CC---cc----------cChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           95 KN---RQ----------VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        95 ~~---~~----------~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      ..   +.          +.+-.+.+|-.+|...+.+|++...|++-+++.|...+...
T Consensus       209 ~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~~~  266 (472)
T PF05783_consen  209 IETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRLYGF  266 (472)
T ss_pred             HHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHhccC
Confidence            42   11          11123478888999999999999999999999999888653

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>PTZ00416 elongation factor 2; Provisional

Probab=97.98  E-value=1.2e-05  Score=72.63  Aligned_cols=67  Identities=22%  Similarity=0.189  Sum_probs=52.2

Q ss_pred             EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 029854           26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK   95 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~   95 (186)
                      ...+.|+||||+..|.......++.+|++|+|+|++..-..+.. ..+..+..  .+.|++++.||+|+.
T Consensus        91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~~~~--~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQALQ--ERIRPVLFINKVDRA  157 (836)
T ss_pred             ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHHHHH--cCCCEEEEEEChhhh
Confidence            57888999999998877778888999999999999886443332 23333333  368999999999986

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=97.93  E-value=2e-05  Score=67.81  Aligned_cols=70  Identities=19%  Similarity=0.226  Sum_probs=55.9

Q ss_pred             CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 029854           23 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK   95 (186)
Q Consensus        23 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~   95 (186)
                      +++.+.++|.||||+-.|..-....++-+|++++|+|+...-.+..- +.++...+  .+.|+++|+||+|..
T Consensus       193 ~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE-r~ikhaiq--~~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  193 KGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE-RIIKHAIQ--NRLPIVVVINKVDRL  262 (971)
T ss_pred             cCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHH-HHHHHHHh--ccCcEEEEEehhHHH
Confidence            67789999999999999988888889999999999999987665532 22333222  379999999999963

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.92  E-value=0.00011  Score=58.19  Aligned_cols=100  Identities=17%  Similarity=0.043  Sum_probs=74.2

Q ss_pred             cccCCccccccccCcEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccCh--HHHHHHHHcCCcE
Q 029854           38 EKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA--KQVTFHRKKNLQY  114 (186)
Q Consensus        38 ~~~~~~~~~~~~~ad~vilv~D~~~~~-s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~  114 (186)
                      ++-..+.+.-+.++|-.++|+.+.+++ +..-+.+++-.+..  .++.-+|+.||+||.+.....  +........+++.
T Consensus        67 ~Rkn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~--~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v  144 (301)
T COG1162          67 PRKNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA--GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPV  144 (301)
T ss_pred             cccCceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH--cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeE
Confidence            344556666677788899999988876 55556666555444  367777779999998654444  3446677789999


Q ss_pred             EEeccCCCCCchHHHHHHHHHHhCC
Q 029854          115 YEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus       115 ~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      +.+|++++.|++++...+...+.-.
T Consensus       145 ~~~s~~~~~~~~~l~~~l~~~~svl  169 (301)
T COG1162         145 LFVSAKNGDGLEELAELLAGKITVL  169 (301)
T ss_pred             EEecCcCcccHHHHHHHhcCCeEEE
Confidence            9999999999999999888776443

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=97.81  E-value=0.00026  Score=56.59  Aligned_cols=133  Identities=17%  Similarity=0.208  Sum_probs=89.3

Q ss_pred             cccccceEEEEEEEEEEC--CeEEEEEEEeCCCccccCCcccccccc----CcEEEEEEeCCChh-hHHhHHHHHHHHHh
Q 029854            6 WGKATIGVEVHPLDFFTN--CGKIRFYCWDTAGQEKFGGLRDGYYIH----GQCAIIMFDVTARL-TYKNVPTWHRDLCR   78 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~--~~~~~l~l~Dt~G~~~~~~~~~~~~~~----ad~vilv~D~~~~~-s~~~i~~~~~~~~~   78 (186)
                      .+.+--|.+|....+.-+  ....++..|=.-|......+.+..+.-    --+|||+.|++++- -.+.+..|..-+.+
T Consensus        77 ~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetlviltasms~Pw~~lesLqkWa~Vl~e  156 (473)
T KOG3905|consen   77 TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETLVILTASMSNPWTLLESLQKWASVLRE  156 (473)
T ss_pred             ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceEEEEEEecCCcHHHHHHHHHHHHHHHH
Confidence            444555666654444322  234677778777765544444444332    24788999999984 45667788765432


Q ss_pred             hcC--------------------------------------------------------------CCCEEEEEeCCCCCC
Q 029854           79 VCE--------------------------------------------------------------NIPIVLCGNKVDVKN   96 (186)
Q Consensus        79 ~~~--------------------------------------------------------------~~p~ilv~nK~Dl~~   96 (186)
                      ...                                                              ++|++||++|||...
T Consensus       157 hidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s  236 (473)
T KOG3905|consen  157 HIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVS  236 (473)
T ss_pred             HHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccccccCCcchhhcCCCcEEEEEeccchhh
Confidence            210                                                              149999999999832


Q ss_pred             -----cc--------cChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           97 -----RQ--------VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        97 -----~~--------~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                           ..        +....++||..+|...+.+|++...||+-+...|+..+..
T Consensus       237 ~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~yG  291 (473)
T KOG3905|consen  237 VLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSYG  291 (473)
T ss_pred             HhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhcC
Confidence                 11        2223458899999999999999999999999999998865

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.72  E-value=0.00016  Score=58.14  Aligned_cols=110  Identities=17%  Similarity=0.117  Sum_probs=68.8

Q ss_pred             CCeEEEEEEEeCCCccccCCcccccccc---CcEEEEEEeCCChhhHHhHH-HHHHHHHhhcCCCCEEEEEeCCCCCCc-
Q 029854           23 NCGKIRFYCWDTAGQEKFGGLRDGYYIH---GQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-   97 (186)
Q Consensus        23 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~---ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~-   97 (186)
                      .+...++.+.|+||+..   +.+..+-+   .|..++|+|+...-.-+... -.+-++.    ....++|.||+|+... 
T Consensus        66 q~e~lq~tlvDCPGHas---LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~----c~klvvvinkid~lpE~  138 (522)
T KOG0461|consen   66 QGEQLQFTLVDCPGHAS---LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL----CKKLVVVINKIDVLPEN  138 (522)
T ss_pred             ccccceeEEEeCCCcHH---HHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh----ccceEEEEeccccccch
Confidence            56778999999999754   33444433   58899999997643211111 1122221    3457788888887532 


Q ss_pred             ccCh----HHHHHHHHc-------CCcEEEeccCCC----CCchHHHHHHHHHHhCC
Q 029854           98 QVKA----KQVTFHRKK-------NLQYYEISAKSN----YNFEKPFLYLARKLAGD  139 (186)
Q Consensus        98 ~~~~----~~~~~~~~~-------~~~~~~~Sa~~~----~gi~~l~~~l~~~i~~~  139 (186)
                      +...    ...++.+.+       +.|++++||+.|    ++|.++...|..++.+.
T Consensus       139 qr~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P  195 (522)
T KOG0461|consen  139 QRASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEP  195 (522)
T ss_pred             hhhhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCC
Confidence            1111    122333332       268999999999    78888888888888654

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.65  E-value=0.00039  Score=59.56  Aligned_cols=108  Identities=19%  Similarity=0.198  Sum_probs=71.2

Q ss_pred             eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHH
Q 029854           25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV  104 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~  104 (186)
                      +.+++.|+||||+-.|.--....++--|++|+|+|+...-.-+...-|.+ +.++  +.|.+..+||+|...+..-....
T Consensus       102 ~~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ-~~ry--~vP~i~FiNKmDRmGa~~~~~l~  178 (721)
T KOG0465|consen  102 RDYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQ-MKRY--NVPRICFINKMDRMGASPFRTLN  178 (721)
T ss_pred             ccceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHH-HHhc--CCCeEEEEehhhhcCCChHHHHH
Confidence            37888999999999999888999999999999999976543333334443 3333  89999999999987654433333


Q ss_pred             HHHHHcCCc--EEEeccCCCCCchHHHHHHHHHHhCC
Q 029854          105 TFHRKKNLQ--YYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus       105 ~~~~~~~~~--~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      .+..+++.+  .+.+    ..|.+..|..++..+..+
T Consensus       179 ~i~~kl~~~~a~vqi----Pig~e~~f~GvvDlv~~k  211 (721)
T KOG0465|consen  179 QIRTKLNHKPAVVQI----PIGSESNFKGVVDLVNGK  211 (721)
T ss_pred             HHHhhcCCchheeEc----cccccccchhHHhhhhce
Confidence            343444422  1111    224444666666655543

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=97.64  E-value=0.00035  Score=47.55  Aligned_cols=67  Identities=24%  Similarity=0.187  Sum_probs=41.4

Q ss_pred             EEEECCeEEEEEEEeCCCccccCC---------ccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEE
Q 029854           19 DFFTNCGKIRFYCWDTAGQEKFGG---------LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG   89 (186)
Q Consensus        19 ~~~~~~~~~~l~l~Dt~G~~~~~~---------~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~   89 (186)
                      .+.+++..+  .|+||||...-..         .....+..+|++++|+|++++.. +.....++.+.   .+.|+++|.
T Consensus        41 ~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~---~~~~~i~v~  114 (116)
T PF01926_consen   41 QFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPIT-EDDKNILRELK---NKKPIILVL  114 (116)
T ss_dssp             EEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSH-HHHHHHHHHHH---TTSEEEEEE
T ss_pred             eeeeceeeE--EEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCC-HHHHHHHHHHh---cCCCEEEEE
Confidence            334455555  5889999643211         12223478999999999887422 12223333332   479999999


Q ss_pred             eC
Q 029854           90 NK   91 (186)
Q Consensus        90 nK   91 (186)
                      ||
T Consensus       115 NK  116 (116)
T PF01926_consen  115 NK  116 (116)
T ss_dssp             ES
T ss_pred             cC
Confidence            98

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=97.57  E-value=0.0002  Score=56.40  Aligned_cols=95  Identities=16%  Similarity=0.049  Sum_probs=60.7

Q ss_pred             CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCC-CEEEEEeCCCCCCcc---
Q 029854           23 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI-PIVLCGNKVDVKNRQ---   98 (186)
Q Consensus        23 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~-p~ilv~nK~Dl~~~~---   98 (186)
                      +..+-.....|+||+..|-...-.-....|+.|||+.+++..--+.... +-..++.  .. .++++.||+|+.+..   
T Consensus        71 et~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEH-iLlarqv--Gvp~ivvflnK~Dmvdd~ell  147 (394)
T COG0050          71 ETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH-ILLARQV--GVPYIVVFLNKVDMVDDEELL  147 (394)
T ss_pred             ecCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhh-hhhhhhc--CCcEEEEEEecccccCcHHHH
Confidence            3344455667999999986655555667899999999998643222111 1111111  45 477899999998632   


Q ss_pred             --cChHHHHHHHHcCC-----cEEEeccC
Q 029854           99 --VKAKQVTFHRKKNL-----QYYEISAK  120 (186)
Q Consensus        99 --~~~~~~~~~~~~~~-----~~~~~Sa~  120 (186)
                        +..+.+.+...+++     |++.-||.
T Consensus       148 elVemEvreLLs~y~f~gd~~Pii~gSal  176 (394)
T COG0050         148 ELVEMEVRELLSEYGFPGDDTPIIRGSAL  176 (394)
T ss_pred             HHHHHHHHHHHHHcCCCCCCcceeechhh
Confidence              23344577788875     57777775

>cd01882 BMS1 Bms1

Probab=97.51  E-value=0.00049  Score=52.73  Aligned_cols=94  Identities=10%  Similarity=0.077  Sum_probs=55.1

Q ss_pred             eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCE-EEEEeCCCCCCccc-ChH
Q 029854           25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDVKNRQV-KAK  102 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~-ilv~nK~Dl~~~~~-~~~  102 (186)
                      ...++.++||||..  ..+ ...++.+|++++|+|++....... ...+..+..  .+.|. ++|.||+|+.+... ..+
T Consensus        81 ~~~~i~~vDtPg~~--~~~-l~~ak~aDvVllviDa~~~~~~~~-~~i~~~l~~--~g~p~vi~VvnK~D~~~~~~~~~~  154 (225)
T cd01882          81 KKRRLTFIECPNDI--NAM-IDIAKVADLVLLLIDASFGFEMET-FEFLNILQV--HGFPRVMGVLTHLDLFKKNKTLRK  154 (225)
T ss_pred             CCceEEEEeCCchH--HHH-HHHHHhcCEEEEEEecCcCCCHHH-HHHHHHHHH--cCCCeEEEEEeccccCCcHHHHHH
Confidence            45567788999853  222 233678999999999986543222 122333322  25674 45999999863211 111


Q ss_pred             HH-----HHHHHc--CCcEEEeccCCCCC
Q 029854          103 QV-----TFHRKK--NLQYYEISAKSNYN  124 (186)
Q Consensus       103 ~~-----~~~~~~--~~~~~~~Sa~~~~g  124 (186)
                      ..     .+..+.  +.+++.+||+++-.
T Consensus       155 ~~~~l~~~~~~~~~~~~ki~~iSa~~~~~  183 (225)
T cd01882         155 TKKRLKHRFWTEVYQGAKLFYLSGIVHGR  183 (225)
T ss_pred             HHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence            11     122111  35799999998853

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.47  E-value=0.00066  Score=55.27  Aligned_cols=108  Identities=16%  Similarity=0.142  Sum_probs=68.9

Q ss_pred             EEEEEEEeCCCccccCCccccccc--cCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccC---
Q 029854           26 KIRFYCWDTAGQEKFGGLRDGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK---  100 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~~~~~~~~--~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~---  100 (186)
                      .-.+.|+|.+|+.+|....-..+.  ..|..++|+.+.....+-. +.-+-.+..  -++|++++.+|+|+..++..   
T Consensus       248 SKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~A--L~iPfFvlvtK~Dl~~~~~~~~t  324 (591)
T KOG1143|consen  248 SKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAA--LNIPFFVLVTKMDLVDRQGLKKT  324 (591)
T ss_pred             cceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHH--hCCCeEEEEEeeccccchhHHHH
Confidence            456788899999999876655554  3688899998876543221 122222222  38999999999999764211   


Q ss_pred             -----------------------hHHHH----HHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854          101 -----------------------AKQVT----FHRKKNLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus       101 -----------------------~~~~~----~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                                             .++..    ++..+-.|+|.+|+.+|+|+. ++..+...+.
T Consensus       325 v~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~-ll~~fLn~Ls  387 (591)
T KOG1143|consen  325 VKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLR-LLRTFLNCLS  387 (591)
T ss_pred             HHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchh-HHHHHHhhcC
Confidence                                   11222    222223589999999999987 4444444443

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=97.44  E-value=0.00076  Score=55.09  Aligned_cols=107  Identities=10%  Similarity=0.041  Sum_probs=65.3

Q ss_pred             EEEEEEeCCCccccCCc--cccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccC----
Q 029854           27 IRFYCWDTAGQEKFGGL--RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK----  100 (186)
Q Consensus        27 ~~l~l~Dt~G~~~~~~~--~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~----  100 (186)
                      -.+.|.||.|++.|-+.  +-.+-...|..++++.+++..+.-. +.-+-.+.  ....|++++.+|+|+.+....    
T Consensus       201 klVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLgi~~--a~~lPviVvvTK~D~~~ddr~~~v~  277 (527)
T COG5258         201 KLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLGIAL--AMELPVIVVVTKIDMVPDDRFQGVV  277 (527)
T ss_pred             cEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhhhhh--hhcCCEEEEEEecccCcHHHHHHHH
Confidence            35668899999998543  3334467899999999988654211 11111111  147999999999999752211    


Q ss_pred             hHHHH----------------------HH-HHcC--CcEEEeccCCCCCchHHHHHHHHHHh
Q 029854          101 AKQVT----------------------FH-RKKN--LQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus       101 ~~~~~----------------------~~-~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                      ++...                      .+ +...  .|++.+|+.+|.|++ ++..+...+.
T Consensus       278 ~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gld-lL~e~f~~Lp  338 (527)
T COG5258         278 EEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLD-LLDEFFLLLP  338 (527)
T ss_pred             HHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHH-HHHHHHHhCC
Confidence            11111                      11 1111  489999999999987 4444444443

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=97.43  E-value=0.0062  Score=50.68  Aligned_cols=118  Identities=14%  Similarity=0.159  Sum_probs=71.7

Q ss_pred             EEEEEE-CCeEEEEEEEeCCCccccCCc-----------------------------cccccc-cCcEEEEEE-eCC---
Q 029854           17 PLDFFT-NCGKIRFYCWDTAGQEKFGGL-----------------------------RDGYYI-HGQCAIIMF-DVT---   61 (186)
Q Consensus        17 ~~~~~~-~~~~~~l~l~Dt~G~~~~~~~-----------------------------~~~~~~-~ad~vilv~-D~~---   61 (186)
                      ..++.. ++-+..+.|+||+|-..-..+                             .+..+. ++++.|+|. |.+   
T Consensus        80 AvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~d  159 (492)
T TIGR02836        80 AVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITD  159 (492)
T ss_pred             ceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccc
Confidence            334433 466688888999984321110                             233455 899999998 775   


Q ss_pred             -ChhhHHh-HHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccC--CCCCchHHHHHHHHHH
Q 029854           62 -ARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAK--SNYNFEKPFLYLARKL  136 (186)
Q Consensus        62 -~~~s~~~-i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~gi~~l~~~l~~~i  136 (186)
                       .+..+.. -.+|++.+++.  ++|++++.||+|-..........++..+++.+++.+|+.  +...|..+|+.++..+
T Consensus       160 I~Re~y~~aEe~~i~eLk~~--~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~EF  236 (492)
T TIGR02836       160 IPREDYVEAEERVIEELKEL--NKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLYEF  236 (492)
T ss_pred             cccccchHHHHHHHHHHHhc--CCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHhcC
Confidence             1122222 24788888775  899999999999322221112235667778888877775  4445666666555444

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=97.42  E-value=0.00074  Score=57.33  Aligned_cols=119  Identities=15%  Similarity=0.276  Sum_probs=90.0

Q ss_pred             EEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCCCEEEEEeCCC
Q 029854           16 HPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVD   93 (186)
Q Consensus        16 ~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~p~ilv~nK~D   93 (186)
                      +.+++.+++....+-+.|.+|..     -..|..++|++||||...+..+|+.+..+...+..+.  ..+|+++++++.-
T Consensus        66 ~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~  140 (749)
T KOG0705|consen   66 FKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDH  140 (749)
T ss_pred             ceeeEEeeccceEeeeecccCCc-----hhhhhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcch
Confidence            44677778888888888988732     2456778999999999999999999887776665443  5789999998876


Q ss_pred             CCC----cccChHHHH-HHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           94 VKN----RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        94 l~~----~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      ..-    .....+..+ .+....+.||+.++.+|.++..+|+.+...+...
T Consensus       141 iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~~~~k~i~~  191 (749)
T KOG0705|consen  141 ISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQEVAQKIVQL  191 (749)
T ss_pred             hhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHHHHHHHHHHH
Confidence            542    223333444 4445568899999999999999999999877654

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=97.37  E-value=0.00022  Score=51.61  Aligned_cols=64  Identities=17%  Similarity=0.181  Sum_probs=45.1

Q ss_pred             EEEEEEeCCCccc----cCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCC
Q 029854           27 IRFYCWDTAGQEK----FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV   92 (186)
Q Consensus        27 ~~l~l~Dt~G~~~----~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~   92 (186)
                      ..+.|+||||...    ...++..++..+|++|+|.+++...+-.....|.+.....  ...+++|.||.
T Consensus       101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~--~~~~i~V~nk~  168 (168)
T PF00350_consen  101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD--KSRTIFVLNKA  168 (168)
T ss_dssp             CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT--CSSEEEEEE-G
T ss_pred             cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC--CCeEEEEEcCC
Confidence            4578889999643    2356778889999999999999865544444555554443  34488999984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=97.28  E-value=0.0011  Score=54.62  Aligned_cols=83  Identities=19%  Similarity=0.199  Sum_probs=62.9

Q ss_pred             eEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeC
Q 029854           12 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNK   91 (186)
Q Consensus        12 g~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK   91 (186)
                      |+.+.+-.++.+=+..++.++||||+-.|+--....++--||++.|||++-.-.-+.+.-|.+.-..   ++|-.+..||
T Consensus        87 gitiqsaav~fdwkg~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqadk~---~ip~~~fink  163 (753)
T KOG0464|consen   87 GITIQSAAVNFDWKGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKF---KIPAHCFINK  163 (753)
T ss_pred             CceeeeeeeecccccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhcccc---CCchhhhhhh
Confidence            3444444555555666777889999999999899999999999999999976555555567655333   7899999999


Q ss_pred             CCCCCc
Q 029854           92 VDVKNR   97 (186)
Q Consensus        92 ~Dl~~~   97 (186)
                      +|....
T Consensus       164 mdk~~a  169 (753)
T KOG0464|consen  164 MDKLAA  169 (753)
T ss_pred             hhhhhh
Confidence            997543

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.25  E-value=0.0018  Score=47.54  Aligned_cols=86  Identities=9%  Similarity=0.079  Sum_probs=60.1

Q ss_pred             eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHH
Q 029854           25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV  104 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~  104 (186)
                      ..+.+.++|||+...  ......+..||.+++++..+.. +...+..+++.+.+.  +.|+.+|.||+|.... ...+..
T Consensus        91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~-~~~~~~~~~~~l~~~--~~~~~vV~N~~~~~~~-~~~~~~  164 (179)
T cd03110          91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPS-GLHDLERAVELVRHF--GIPVGVVINKYDLNDE-IAEEIE  164 (179)
T ss_pred             cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcc-cHHHHHHHHHHHHHc--CCCEEEEEeCCCCCcc-hHHHHH
Confidence            567888999986532  2334567889999999999854 666666777666554  5678999999997533 233455


Q ss_pred             HHHHHcCCcEEE
Q 029854          105 TFHRKKNLQYYE  116 (186)
Q Consensus       105 ~~~~~~~~~~~~  116 (186)
                      +++++.+++++.
T Consensus       165 ~~~~~~~~~vl~  176 (179)
T cd03110         165 DYCEEEGIPILG  176 (179)
T ss_pred             HHHHHcCCCeEE
Confidence            667777777654

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>smart00053 DYNc Dynamin, GTPase

Probab=97.17  E-value=0.00077  Score=52.17  Aligned_cols=70  Identities=9%  Similarity=0.086  Sum_probs=46.0

Q ss_pred             EEEEEEEeCCCcccc-------------CCccccccc-cCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeC
Q 029854           26 KIRFYCWDTAGQEKF-------------GGLRDGYYI-HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNK   91 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~-------------~~~~~~~~~-~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK   91 (186)
                      ...|.|+||||....             ..+...|++ .++++++|+|++...+-.......+.+..  ...|+++|+||
T Consensus       124 ~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~--~~~rti~ViTK  201 (240)
T smart00053      124 VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP--QGERTIGVITK  201 (240)
T ss_pred             CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH--cCCcEEEEEEC
Confidence            378899999997421             124556777 45699999998754322222233333332  36899999999


Q ss_pred             CCCCCc
Q 029854           92 VDVKNR   97 (186)
Q Consensus        92 ~Dl~~~   97 (186)
                      +|..++
T Consensus       202 ~D~~~~  207 (240)
T smart00053      202 LDLMDE  207 (240)
T ss_pred             CCCCCc
Confidence            998754

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=97.15  E-value=0.0011  Score=51.65  Aligned_cols=71  Identities=15%  Similarity=0.182  Sum_probs=52.4

Q ss_pred             eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhh----------HHhHHHHHHHHHhhc--CCCCEEEEEeCC
Q 029854           25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT----------YKNVPTWHRDLCRVC--ENIPIVLCGNKV   92 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s----------~~~i~~~~~~~~~~~--~~~p~ilv~nK~   92 (186)
                      .+++++++|.+||+.-+.-|-..+.+..++|||+..+..+-          +++....++.+.+..  ...-+|+..||.
T Consensus       200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKq  279 (379)
T KOG0099|consen  200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQ  279 (379)
T ss_pred             cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence            45678999999999999999999999999999998875321          222222333333321  467899999999


Q ss_pred             CCC
Q 029854           93 DVK   95 (186)
Q Consensus        93 Dl~   95 (186)
                      |+.
T Consensus       280 Dll  282 (379)
T KOG0099|consen  280 DLL  282 (379)
T ss_pred             HHH
Confidence            974

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=97.13  E-value=0.00015  Score=55.35  Aligned_cols=130  Identities=18%  Similarity=0.148  Sum_probs=86.6

Q ss_pred             ccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhh----------HHhHHHHHHHH
Q 029854            7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT----------YKNVPTWHRDL   76 (186)
Q Consensus         7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s----------~~~i~~~~~~~   76 (186)
                      ..||.|+.-++..+    .++.+.+.|.+||..-+.-|-..+.+.-.+++++..+..+.          .++-...+.-+
T Consensus       183 RvPTTGi~eypfdl----~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTI  258 (359)
T KOG0085|consen  183 RVPTTGIIEYPFDL----QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTI  258 (359)
T ss_pred             ecCcccceecCcch----hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHH
Confidence            35778866555444    67788899999999988889999988888888776654332          22223344444


Q ss_pred             Hhhc--CCCCEEEEEeCCCCCCccc-----------------ChH-HHHHHH----HcC------CcEEEeccCCCCCch
Q 029854           77 CRVC--ENIPIVLCGNKVDVKNRQV-----------------KAK-QVTFHR----KKN------LQYYEISAKSNYNFE  126 (186)
Q Consensus        77 ~~~~--~~~p~ilv~nK~Dl~~~~~-----------------~~~-~~~~~~----~~~------~~~~~~Sa~~~~gi~  126 (186)
                      ..+.  .+.++|+..||.|+.+..+                 ... +.++..    ..+      +--..++|.+-.||.
T Consensus       259 i~yPWF~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIR  338 (359)
T KOG0085|consen  259 ITYPWFQNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIR  338 (359)
T ss_pred             hccccccCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHH
Confidence            4442  5899999999999864221                 111 222221    112      123467888999999


Q ss_pred             HHHHHHHHHHhCCC
Q 029854          127 KPFLYLARKLAGDP  140 (186)
Q Consensus       127 ~l~~~l~~~i~~~~  140 (186)
                      -+|.++-..+++..
T Consensus       339 fVFaaVkDtiLq~~  352 (359)
T KOG0085|consen  339 FVFAAVKDTILQLN  352 (359)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999988887653

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=97.05  E-value=0.0045  Score=50.62  Aligned_cols=107  Identities=12%  Similarity=0.107  Sum_probs=64.9

Q ss_pred             EEEEEEEeCCCccccCCccc--cccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHH
Q 029854           26 KIRFYCWDTAGQEKFGGLRD--GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ  103 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~~~~--~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~  103 (186)
                      --.+.|+|.+|+++|-...-  +.-.-.|..++++-++-.. .--.+.-+.....  -++|+++|.+|+|+....+-++.
T Consensus       218 aKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgLALa--L~VPVfvVVTKIDMCPANiLqEt  294 (641)
T KOG0463|consen  218 AKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGLALA--LHVPVFVVVTKIDMCPANILQET  294 (641)
T ss_pred             ceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhhhhhh--hcCcEEEEEEeeccCcHHHHHHH
Confidence            35678999999999865432  2223467778887665431 0000111111111  37999999999999876665554


Q ss_pred             HHHH----HHcC--------------------------CcEEEeccCCCCCchHHHHHHHHHH
Q 029854          104 VTFH----RKKN--------------------------LQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus       104 ~~~~----~~~~--------------------------~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      .++.    +..+                          +++|.+|-.+|.|+. ++......+
T Consensus       295 mKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~-LLkmFLNll  356 (641)
T KOG0463|consen  295 MKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLP-LLKMFLNLL  356 (641)
T ss_pred             HHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChH-HHHHHHhhc
Confidence            3222    1111                          478999999999986 444444333

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=96.94  E-value=0.0025  Score=52.39  Aligned_cols=106  Identities=16%  Similarity=0.132  Sum_probs=69.0

Q ss_pred             eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCCh---hhHHhHHHHHHHHHh--hcCCCCEEEEEeCCCCCCcc-
Q 029854           25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR---LTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKNRQ-   98 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~---~s~~~i~~~~~~~~~--~~~~~p~ilv~nK~Dl~~~~-   98 (186)
                      ..-++.+.|+||+..|....-.-.+.||..++|+.+...   ..|+.=-+..+...-  ...-..+|++.||+|-+... 
T Consensus       155 e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnW  234 (501)
T KOG0459|consen  155 ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW  234 (501)
T ss_pred             cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCc
Confidence            445777889999999887777777889999999988543   133322112222221  12357899999999987422 


Q ss_pred             -------cChHHHHHHHHcC------CcEEEeccCCCCCchHHHH
Q 029854           99 -------VKAKQVTFHRKKN------LQYYEISAKSNYNFEKPFL  130 (186)
Q Consensus        99 -------~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~  130 (186)
                             ...+...+.+..+      ..++.||..+|.++.+...
T Consensus       235 s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  235 SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence                   1122223444333      3599999999999987665

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=96.92  E-value=0.0034  Score=46.13  Aligned_cols=45  Identities=20%  Similarity=0.288  Sum_probs=29.2

Q ss_pred             cEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCc
Q 029854           52 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR   97 (186)
Q Consensus        52 d~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~   97 (186)
                      |++++|+|+..+.+-.. ..+.+.+.-...+.|+++|.||+|+.+.
T Consensus         1 DvVl~VvDar~p~~~~~-~~i~~~~~l~~~~kp~IlVlNK~DL~~~   45 (172)
T cd04178           1 DVILEVLDARDPLGCRC-PQVEEAVLQAGGNKKLVLVLNKIDLVPK   45 (172)
T ss_pred             CEEEEEEECCCCCCCCC-HHHHHHHHhccCCCCEEEEEehhhcCCH
Confidence            78999999988643322 1222222111136899999999999643

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>COG1161 Predicted GTPases [General function prediction only]

Probab=96.89  E-value=0.001  Score=53.71  Aligned_cols=93  Identities=22%  Similarity=0.200  Sum_probs=64.9

Q ss_pred             eCCCc-cccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChH-HHHHHHHc
Q 029854           33 DTAGQ-EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFHRKK  110 (186)
Q Consensus        33 Dt~G~-~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~  110 (186)
                      +.+|+ .++.......+..+|+|+-|+|+.++.+-..     ..+.+...+.|.++|+||+|+.+...... ...+.+..
T Consensus        16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~-----~~l~~~v~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~   90 (322)
T COG1161          16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN-----PELERIVKEKPKLLVLNKADLAPKEVTKKWKKYFKKEE   90 (322)
T ss_pred             CCCCchHHHHHHHHHhcccCCEEEEEEeccccccccC-----ccHHHHHccCCcEEEEehhhcCCHHHHHHHHHHHHhcC
Confidence            33553 4556667778889999999999999876432     33334444677799999999987655333 22344444


Q ss_pred             CCcEEEeccCCCCCchHHHH
Q 029854          111 NLQYYEISAKSNYNFEKPFL  130 (186)
Q Consensus       111 ~~~~~~~Sa~~~~gi~~l~~  130 (186)
                      +...+.++++.+.+...+..
T Consensus        91 ~~~~~~v~~~~~~~~~~i~~  110 (322)
T COG1161          91 GIKPIFVSAKSRQGGKKIRK  110 (322)
T ss_pred             CCccEEEEeecccCccchHH
Confidence            67788999998888776664

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=96.75  E-value=0.0028  Score=47.20  Aligned_cols=98  Identities=9%  Similarity=0.017  Sum_probs=57.9

Q ss_pred             EEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC--CCCEEEEEeCCCCCCcccC--hH
Q 029854           27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNRQVK--AK  102 (186)
Q Consensus        27 ~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~--~~  102 (186)
                      ..+-|+..+|.--   ..-++.-..+.-|+|+|.+..+.   +      .++-.+  ..-=++|+||.||.+...-  +.
T Consensus        97 ~Dll~iEs~GNL~---~~~sp~L~d~~~v~VidvteGe~---~------P~K~gP~i~~aDllVInK~DLa~~v~~dlev  164 (202)
T COG0378          97 LDLLFIESVGNLV---CPFSPDLGDHLRVVVIDVTEGED---I------PRKGGPGIFKADLLVINKTDLAPYVGADLEV  164 (202)
T ss_pred             CCEEEEecCccee---cccCcchhhceEEEEEECCCCCC---C------cccCCCceeEeeEEEEehHHhHHHhCccHHH
Confidence            4555666666111   11122233458889999887532   0      011011  1134688999999753322  22


Q ss_pred             HHHHHHHc--CCcEEEeccCCCCCchHHHHHHHHHH
Q 029854          103 QVTFHRKK--NLQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus       103 ~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      ..+-+++.  +.+++++|+++|.|+++++.++....
T Consensus       165 m~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         165 MARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             HHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            22333333  47899999999999999999987654

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=96.72  E-value=0.005  Score=49.69  Aligned_cols=106  Identities=15%  Similarity=0.022  Sum_probs=63.6

Q ss_pred             EEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCC
Q 029854           14 EVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD   93 (186)
Q Consensus        14 ~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~D   93 (186)
                      +..+..++.  .+-...=.|+||+..|-...-.-...-|++|+|+.++|..=-+ .+.-+-..++ ..-..+++..||.|
T Consensus       106 n~aHveYeT--a~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQ-TrEHlLLArQ-VGV~~ivvfiNKvD  181 (449)
T KOG0460|consen  106 NAAHVEYET--AKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQ-TREHLLLARQ-VGVKHIVVFINKVD  181 (449)
T ss_pred             eeeeeeeec--cccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcc-hHHHHHHHHH-cCCceEEEEEeccc
Confidence            344444433  3334445599999988655555556679999999999863211 1111111122 22355889999999


Q ss_pred             CCCcc-----cChHHHHHHHHcCC-----cEEEecc---CCCC
Q 029854           94 VKNRQ-----VKAKQVTFHRKKNL-----QYYEISA---KSNY  123 (186)
Q Consensus        94 l~~~~-----~~~~~~~~~~~~~~-----~~~~~Sa---~~~~  123 (186)
                      +.+..     +.-+.+++..++++     |++.-||   +.|.
T Consensus       182 ~V~d~e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL~ALeg~  224 (449)
T KOG0460|consen  182 LVDDPEMLELVEMEIRELLSEFGFDGDNTPVIRGSALCALEGR  224 (449)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHcCCCCCCCCeeecchhhhhcCC
Confidence            98432     33345677788864     6776655   4553

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=96.69  E-value=0.0041  Score=54.75  Aligned_cols=80  Identities=18%  Similarity=0.170  Sum_probs=57.4

Q ss_pred             cceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh-cCCCCEEEE
Q 029854           10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLC   88 (186)
Q Consensus        10 Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~-~~~~p~ilv   88 (186)
                      |=|+...+-.+..-.+.+.+.|+|+||+-.|........+=+|++++++|+...-.-+.    +.-+++. ......++|
T Consensus        55 ~rgitmkss~is~~~~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt----~~vlrq~~~~~~~~~lv  130 (887)
T KOG0467|consen   55 TRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQT----YAVLRQAWIEGLKPILV  130 (887)
T ss_pred             hhceeeeccccccccCceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhH----HHHHHHHHHccCceEEE
Confidence            44555544444445577888999999999999999999999999999999987543322    1122221 135678899


Q ss_pred             EeCCC
Q 029854           89 GNKVD   93 (186)
Q Consensus        89 ~nK~D   93 (186)
                      +||+|
T Consensus       131 inkid  135 (887)
T KOG0467|consen  131 INKID  135 (887)
T ss_pred             Eehhh
Confidence            99999

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=96.61  E-value=0.0022  Score=54.04  Aligned_cols=71  Identities=17%  Similarity=0.221  Sum_probs=49.8

Q ss_pred             ccccccCcEEEEEEeCCChhhHH--hHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHH---HHcCCcEEEecc
Q 029854           45 DGYYIHGQCAIIMFDVTARLTYK--NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFH---RKKNLQYYEISA  119 (186)
Q Consensus        45 ~~~~~~ad~vilv~D~~~~~s~~--~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~---~~~~~~~~~~Sa  119 (186)
                      +..+..+|+||.++|+.++-=|.  ++..|+..+.   +++..+|+.||.||.....   ...|+   ..++++++..||
T Consensus       169 WRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d---~~K~~~LLvNKaDLl~~~q---r~aWa~YF~~~ni~~vf~SA  242 (562)
T KOG1424|consen  169 WRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVD---PSKANVLLVNKADLLPPEQ---RVAWAEYFRQNNIPVVFFSA  242 (562)
T ss_pred             HHHHhhcceEEEEeecCCccccCChhHHHHHhccc---cccceEEEEehhhcCCHHH---HHHHHHHHHhcCceEEEEec
Confidence            34577899999999999986554  2344444433   4678899999999964322   22443   455699999999


Q ss_pred             CC
Q 029854          120 KS  121 (186)
Q Consensus       120 ~~  121 (186)
                      ..
T Consensus       243 ~~  244 (562)
T KOG1424|consen  243 LA  244 (562)
T ss_pred             cc
Confidence            86

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=96.58  E-value=0.0039  Score=49.51  Aligned_cols=54  Identities=20%  Similarity=0.178  Sum_probs=38.4

Q ss_pred             CCCEEEEEeCCCCCCcc--cChHHHHHHHHc--CCcEEEeccCCCCCchHHHHHHHHH
Q 029854           82 NIPIVLCGNKVDVKNRQ--VKAKQVTFHRKK--NLQYYEISAKSNYNFEKPFLYLARK  135 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~~--~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~  135 (186)
                      ..+-++|.||+|+.+..  ......+..+..  ..+++.+||++|.|+++++.+|..+
T Consensus       230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            35678999999997521  111222323332  4689999999999999999999864

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=96.51  E-value=0.014  Score=46.36  Aligned_cols=103  Identities=12%  Similarity=0.018  Sum_probs=63.7

Q ss_pred             EEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHH
Q 029854           27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTF  106 (186)
Q Consensus        27 ~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~  106 (186)
                      +-+.|+.|.|--...   -...+.||.+++|.=+.-.+..+-++.   .+.    ..-=++|+||.|..+.........+
T Consensus       144 ~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~---Gim----EiaDi~vINKaD~~~A~~a~r~l~~  213 (323)
T COG1703         144 YDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKA---GIM----EIADIIVINKADRKGAEKAARELRS  213 (323)
T ss_pred             CCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHh---hhh----hhhheeeEeccChhhHHHHHHHHHH
Confidence            445566775532211   123456899999987766655554432   222    2345788999997654322221111


Q ss_pred             H----H------HcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854          107 H----R------KKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus       107 ~----~------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      +    .      .+..+++.+||.+|+|++++++.+.++..-.
T Consensus       214 al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~  256 (323)
T COG1703         214 ALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFL  256 (323)
T ss_pred             HHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHH
Confidence            1    1      1124799999999999999999999888644

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=96.50  E-value=0.0026  Score=50.63  Aligned_cols=109  Identities=15%  Similarity=0.156  Sum_probs=69.7

Q ss_pred             EEEEEEeCCCccccCCccccccccCcEEEEEEeCCCh----hhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChH
Q 029854           27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR----LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK  102 (186)
Q Consensus        27 ~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~----~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~  102 (186)
                      -.+.|.|+||++-.....-.-..-.|++++++..+..    ++-+.+..  -++.+   -..++++-||+||.....-.+
T Consensus       125 RHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--veiM~---LkhiiilQNKiDli~e~~A~e  199 (466)
T KOG0466|consen  125 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEIMK---LKHIIILQNKIDLIKESQALE  199 (466)
T ss_pred             EEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHHhh---hceEEEEechhhhhhHHHHHH
Confidence            3567889999876443222222234788888877653    23332211  12222   367999999999975332222


Q ss_pred             ----HHHHHHHc---CCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029854          103 ----QVTFHRKK---NLQYYEISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus       103 ----~~~~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                          ..+|...-   +.|++.+||.-..||+-+.+.+++.+....
T Consensus       200 q~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPv  244 (466)
T KOG0466|consen  200 QHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPV  244 (466)
T ss_pred             HHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCc
Confidence                22344322   468999999999999999999999987543

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.41  E-value=0.029  Score=43.42  Aligned_cols=111  Identities=19%  Similarity=0.228  Sum_probs=68.5

Q ss_pred             eEEEEEEEeCCCccccCC---ccccccccCcEEEEEEeCCChhhHHhHHHHHHHHH---hhcCCCCEEEEEeCCCCCCcc
Q 029854           25 GKIRFYCWDTAGQEKFGG---LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC---RVCENIPIVLCGNKVDVKNRQ   98 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~~---~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~---~~~~~~p~ilv~nK~Dl~~~~   98 (186)
                      .-+.+++||.|||-.+-.   -..+.++++-+.|+|+|+.+.. .+.+.+....+.   +..+++-+=+.+.|.|-....
T Consensus        73 sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy-~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd  151 (347)
T KOG3887|consen   73 SFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDY-MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDD  151 (347)
T ss_pred             hhcceEEeecCCccccCCCccCHHHHHhccCeEEEEEechHHH-HHHHHHHHHHhhheeecCCCceEEEEEEeccCCchh
Confidence            458899999999976532   2356688999999999998742 222333333332   233778888999999965322


Q ss_pred             --cChH------HHHHHHHcC-----CcEEEeccCCCCCchHHHHHHHHHHh
Q 029854           99 --VKAK------QVTFHRKKN-----LQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus        99 --~~~~------~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                        +...      ...-....+     +.++.+|.. ...|-|+|..+++++.
T Consensus       152 ~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSIy-DHSIfEAFSkvVQkLi  202 (347)
T KOG3887|consen  152 FKIETQRDIHQRTNDELADAGLEKVQVSFYLTSIY-DHSIFEAFSKVVQKLI  202 (347)
T ss_pred             hhhhhHHHHHHHhhHHHHhhhhccceEEEEEeeec-chHHHHHHHHHHHHHh
Confidence              1111      111111222     345666655 4578888888887775

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=96.39  E-value=0.004  Score=48.47  Aligned_cols=84  Identities=8%  Similarity=0.048  Sum_probs=51.5

Q ss_pred             cccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHH----HHHHH----cCCcEEEecc
Q 029854           48 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV----TFHRK----KNLQYYEISA  119 (186)
Q Consensus        48 ~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~----~~~~~----~~~~~~~~Sa  119 (186)
                      ..-||.+++|.-+.-.+..+.++.   .+.+    ..=++|+||+|++.........    .+...    +..+++.+||
T Consensus       140 ~~~aD~~v~v~~Pg~GD~iQ~~Ka---GimE----iaDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA  212 (266)
T PF03308_consen  140 ADMADTVVLVLVPGLGDEIQAIKA---GIME----IADIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSA  212 (266)
T ss_dssp             HTTSSEEEEEEESSTCCCCCTB-T---THHH----H-SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBT
T ss_pred             HHhcCeEEEEecCCCccHHHHHhh---hhhh----hccEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEe
Confidence            456999999998877666554432   2222    3457888999965432211111    11111    1247999999


Q ss_pred             CCCCCchHHHHHHHHHHhC
Q 029854          120 KSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus       120 ~~~~gi~~l~~~l~~~i~~  138 (186)
                      .+|.||+++++.+.++...
T Consensus       213 ~~~~Gi~eL~~~i~~~~~~  231 (266)
T PF03308_consen  213 LEGEGIDELWEAIDEHRDY  231 (266)
T ss_dssp             TTTBSHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999876643

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=96.33  E-value=0.015  Score=46.67  Aligned_cols=69  Identities=9%  Similarity=0.001  Sum_probs=41.2

Q ss_pred             EEEEEEEeCCCccccCCcc-------cccc--ccCcEEEEEEeCCChhhHHhH-HHHHHHHHhhcC---CCCEEEEEeCC
Q 029854           26 KIRFYCWDTAGQEKFGGLR-------DGYY--IHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE---NIPIVLCGNKV   92 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~~~-------~~~~--~~ad~vilv~D~~~~~s~~~i-~~~~~~~~~~~~---~~p~ilv~nK~   92 (186)
                      ...+.+|||||........       +.++  .+.|++|+|..++.. .+... ...++.+...+.   -.+.+|+.|++
T Consensus        85 G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~  163 (313)
T TIGR00991        85 GFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHA  163 (313)
T ss_pred             CeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECC
Confidence            4578899999976542221       1111  268999999655422 12111 234444544432   36799999999


Q ss_pred             CCC
Q 029854           93 DVK   95 (186)
Q Consensus        93 Dl~   95 (186)
                      |..
T Consensus       164 d~~  166 (313)
T TIGR00991       164 QFS  166 (313)
T ss_pred             ccC
Confidence            975

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=96.23  E-value=0.036  Score=42.60  Aligned_cols=64  Identities=23%  Similarity=0.227  Sum_probs=44.1

Q ss_pred             EEEEEEeC-CCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 029854           27 IRFYCWDT-AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK   95 (186)
Q Consensus        27 ~~l~l~Dt-~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~   95 (186)
                      ..+.+.|| +|.+.|.   +...+++|.+|.|+|++.+ |+....+..+...+. .=.++.+|.||.|-.
T Consensus       134 ~e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~~-sl~taeri~~L~~el-g~k~i~~V~NKv~e~  198 (255)
T COG3640         134 YEVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSYK-SLRTAERIKELAEEL-GIKRIFVVLNKVDEE  198 (255)
T ss_pred             CcEEEEecccchhhhc---cccccCCCEEEEEeCCcHH-HHHHHHHHHHHHHHh-CCceEEEEEeeccch
Confidence            45667799 8887765   4567899999999999965 444433333222222 127899999999853

>PTZ00258 GTP-binding protein; Provisional

Probab=96.23  E-value=0.035  Score=46.03  Aligned_cols=41  Identities=20%  Similarity=0.099  Sum_probs=26.5

Q ss_pred             CCCEEEEEeCC--CCC-C-cccChHHHHHHHHc-CCcEEEeccCCC
Q 029854           82 NIPIVLCGNKV--DVK-N-RQVKAKQVTFHRKK-NLQYYEISAKSN  122 (186)
Q Consensus        82 ~~p~ilv~nK~--Dl~-~-~~~~~~~~~~~~~~-~~~~~~~Sa~~~  122 (186)
                      .+|+++|+|+.  |+. . ........+++... +.+++.+||+..
T Consensus       220 ~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~~~~~~~~v~~sa~~E  265 (390)
T PTZ00258        220 AKPMIYLVNMSEKDFIRQKNKWLAKIKEWVGEKGGGPIIPYSAEFE  265 (390)
T ss_pred             cCCEEEEEECchhhhcccchHHHHHHHHHHHhcCCCeEEEeeHHHH
Confidence            47999999999  762 2 11122234555565 478999998544

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=96.02  E-value=0.035  Score=42.03  Aligned_cols=126  Identities=9%  Similarity=-0.033  Sum_probs=69.8

Q ss_pred             cceEEEEEEEEEECCeEEEEEEEeCCCccccCCc--------c---ccccccCcEEEEEEeCCChhhHHhHHHHHHHHHh
Q 029854           10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------R---DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR   78 (186)
Q Consensus        10 Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~--------~---~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~   78 (186)
                      |..+....  ..++|..  +.++||||.......        .   .....+.+++|||+..+.. +-.+ ...++.+..
T Consensus        36 t~~~~~~~--~~~~g~~--v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~-t~~~-~~~l~~l~~  109 (212)
T PF04548_consen   36 TQECQKYS--GEVDGRQ--VTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRF-TEED-REVLELLQE  109 (212)
T ss_dssp             -SS-EEEE--EEETTEE--EEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB--SHHH-HHHHHHHHH
T ss_pred             ccccceee--eeecceE--EEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcc-hHHH-HHHHHHHHH
Confidence            44444443  3556654  567799995432211        1   1234578999999999833 3222 233334444


Q ss_pred             hcC---CCCEEEEEeCCCCCCcccCh--------H-HHHHHHHcCCcEEEeccC------CCCCchHHHHHHHHHHhCCC
Q 029854           79 VCE---NIPIVLCGNKVDVKNRQVKA--------K-QVTFHRKKNLQYYEISAK------SNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus        79 ~~~---~~p~ilv~nK~Dl~~~~~~~--------~-~~~~~~~~~~~~~~~Sa~------~~~gi~~l~~~l~~~i~~~~  140 (186)
                      .+.   -..++||.|..|........        . ...+.+..+-.|..++.+      ....+.+||..+-+.+.++.
T Consensus       110 ~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~  189 (212)
T PF04548_consen  110 IFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYHVFNNKTKDKEKDESQVSELLEKIEEMVQENG  189 (212)
T ss_dssp             HHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence            332   24688888988865432211        1 224556667778888777      33468888888888887665


Q ss_pred             C
Q 029854          141 N  141 (186)
Q Consensus       141 ~  141 (186)
                      .
T Consensus       190 g  190 (212)
T PF04548_consen  190 G  190 (212)
T ss_dssp             T
T ss_pred             C
Confidence            3

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>KOG2484 consensus GTPase [General function prediction only]

Probab=95.99  E-value=0.006  Score=50.04  Aligned_cols=62  Identities=18%  Similarity=0.209  Sum_probs=41.9

Q ss_pred             cCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChH
Q 029854           40 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK  102 (186)
Q Consensus        40 ~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~  102 (186)
                      |..-.+..+.-+|+||-|.|+.|+.+=.. ...-+.+.+...+..+|+|.||+||..+..-++
T Consensus       136 Y~ke~rkvve~sDVVleVlDARDPlgtR~-~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~  197 (435)
T KOG2484|consen  136 YDKEFRKVVEASDVVLEVLDARDPLGTRC-PEVEEAVLQAHGNKKLILVLNKIDLVPREVVEK  197 (435)
T ss_pred             HHHHHHHHHhhhheEEEeeeccCCCCCCC-hhHHHHHHhccCCceEEEEeehhccCCHHHHHH
Confidence            33344555677999999999999875331 222333444445789999999999976554333

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.73  E-value=0.0089  Score=48.82  Aligned_cols=69  Identities=20%  Similarity=0.121  Sum_probs=45.5

Q ss_pred             EEEEEeCCCccc-----------cCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCC
Q 029854           28 RFYCWDTAGQEK-----------FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN   96 (186)
Q Consensus        28 ~l~l~Dt~G~~~-----------~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~   96 (186)
                      .+.|+||||.-.           |.....=|+..+|.++++||+...+--++....+..++..  .-.+-||.||.|..+
T Consensus       148 ~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~--EdkiRVVLNKADqVd  225 (532)
T KOG1954|consen  148 SVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH--EDKIRVVLNKADQVD  225 (532)
T ss_pred             heeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC--cceeEEEeccccccC
Confidence            567889999432           1223344567899999999998765333444555555543  456778899999865


Q ss_pred             cc
Q 029854           97 RQ   98 (186)
Q Consensus        97 ~~   98 (186)
                      .+
T Consensus       226 tq  227 (532)
T KOG1954|consen  226 TQ  227 (532)
T ss_pred             HH
Confidence            43

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=95.62  E-value=0.056  Score=42.12  Aligned_cols=69  Identities=9%  Similarity=0.008  Sum_probs=40.2

Q ss_pred             EEEEEEeCCCccccCC---c-------cccccc--cCcEEEEEEeCCCh-hhHHhHHHHHHHHHhhcC---CCCEEEEEe
Q 029854           27 IRFYCWDTAGQEKFGG---L-------RDGYYI--HGQCAIIMFDVTAR-LTYKNVPTWHRDLCRVCE---NIPIVLCGN   90 (186)
Q Consensus        27 ~~l~l~Dt~G~~~~~~---~-------~~~~~~--~ad~vilv~D~~~~-~s~~~i~~~~~~~~~~~~---~~p~ilv~n   90 (186)
                      ..+.+|||||......   .       ...+++  ..+++++|..++.. .++.+ ...++.+...+.   -.++++|.|
T Consensus        79 ~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T  157 (249)
T cd01853          79 FKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLT  157 (249)
T ss_pred             eEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEe
Confidence            5678999999765421   0       122332  57888888766532 12221 234444444332   257999999


Q ss_pred             CCCCCC
Q 029854           91 KVDVKN   96 (186)
Q Consensus        91 K~Dl~~   96 (186)
                      |+|...
T Consensus       158 ~~d~~~  163 (249)
T cd01853         158 HAASSP  163 (249)
T ss_pred             CCccCC
Confidence            999863

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PHA02518 ParA-like protein; Provisional

Probab=95.41  E-value=0.052  Score=40.57  Aligned_cols=68  Identities=10%  Similarity=0.011  Sum_probs=43.9

Q ss_pred             eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChh--hHHhHHHHHHHHHhhcCCCCE-EEEEeCCCC
Q 029854           25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVCENIPI-VLCGNKVDV   94 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~--s~~~i~~~~~~~~~~~~~~p~-ilv~nK~Dl   94 (186)
                      ..+.+.|+||||.  ...+....+..||.+|++...+...  +...+..++..+.......|. .++.|+.+.
T Consensus        75 ~~~d~viiD~p~~--~~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~  145 (211)
T PHA02518         75 SGYDYVVVDGAPQ--DSELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIK  145 (211)
T ss_pred             ccCCEEEEeCCCC--ccHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCC
Confidence            3467889999986  3455677888999999999888542  333344445444333334544 466777653

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=95.10  E-value=0.11  Score=41.01  Aligned_cols=96  Identities=11%  Similarity=-0.038  Sum_probs=57.7

Q ss_pred             eEEEEEEEeCCCccccCCccc------------cccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCC
Q 029854           25 GKIRFYCWDTAGQEKFGGLRD------------GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV   92 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~~~~~------------~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~   92 (186)
                      ..+.+.|+||+|........-            ..-..++.+++|+|++-..  +.+. +...+.+..  .+.-+|.||.
T Consensus       153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~-~~~~f~~~~--~~~g~IlTKl  227 (272)
T TIGR00064       153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALE-QAKVFNEAV--GLTGIILTKL  227 (272)
T ss_pred             CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHH-HHHHHHhhC--CCCEEEEEcc
Confidence            346778889999754322110            1112489999999997532  2222 223333221  2456889999


Q ss_pred             CCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHH
Q 029854           93 DVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF  129 (186)
Q Consensus        93 Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  129 (186)
                      |...+  .-....+....+.|+..++  +|.+++++-
T Consensus       228 De~~~--~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~  260 (272)
T TIGR00064       228 DGTAK--GGIILSIAYELKLPIKFIG--VGEKIDDLA  260 (272)
T ss_pred             CCCCC--ccHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence            97433  2234455667788988888  788776654

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.09  E-value=0.2  Score=39.06  Aligned_cols=88  Identities=16%  Similarity=0.233  Sum_probs=62.4

Q ss_pred             ccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCc-------------------------------
Q 029854           49 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-------------------------------   97 (186)
Q Consensus        49 ~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-------------------------------   97 (186)
                      ....++++|||.+....+..+..|+..-.-. .=-.++++|||.|....                               
T Consensus        77 ~pl~a~vmvfdlse~s~l~alqdwl~htdin-sfdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgis  155 (418)
T KOG4273|consen   77 EPLQAFVMVFDLSEKSGLDALQDWLPHTDIN-SFDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGIS  155 (418)
T ss_pred             cceeeEEEEEeccchhhhHHHHhhccccccc-cchhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccc
Confidence            3467899999999999999999998643221 11246788999985320                               


Q ss_pred             ---------------ccChHHHHHHHHcCCcEEEeccCCC------------CCchHHHHHHHHHHh
Q 029854           98 ---------------QVKAKQVTFHRKKNLQYYEISAKSN------------YNFEKPFLYLARKLA  137 (186)
Q Consensus        98 ---------------~~~~~~~~~~~~~~~~~~~~Sa~~~------------~gi~~l~~~l~~~i~  137 (186)
                                     .+....++|+.++++.+++.||.+.            .|++.+|.+|..++.
T Consensus       156 etegssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmw  222 (418)
T KOG4273|consen  156 ETEGSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMW  222 (418)
T ss_pred             ccccccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccC
Confidence                           0111235899999999999998543            478888888876664

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=95.00  E-value=0.079  Score=37.28  Aligned_cols=65  Identities=8%  Similarity=0.140  Sum_probs=45.9

Q ss_pred             EEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCC
Q 029854           27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV   94 (186)
Q Consensus        27 ~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl   94 (186)
                      +.+.++|+++.  ........+..+|.++++.+.+.. ++......++.+.+.....++.+|.|+++-
T Consensus        45 yd~VIiD~p~~--~~~~~~~~l~~aD~vviv~~~~~~-s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~  109 (139)
T cd02038          45 YDYIIIDTGAG--ISDNVLDFFLAADEVIVVTTPEPT-SITDAYALIKKLAKQLRVLNFRVVVNRAES  109 (139)
T ss_pred             CCEEEEECCCC--CCHHHHHHHHhCCeEEEEcCCChh-HHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence            66788999874  333445678999999999999754 555545555555444345678899999974

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=94.92  E-value=0.15  Score=41.21  Aligned_cols=96  Identities=11%  Similarity=0.031  Sum_probs=57.8

Q ss_pred             eEEEEEEEeCCCccccCC-----ccc------c-ccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCC
Q 029854           25 GKIRFYCWDTAGQEKFGG-----LRD------G-YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV   92 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~~-----~~~------~-~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~   92 (186)
                      ..+.+.|+||||......     +..      . .-...+.+++|.|++-..  ..+.. .....+.  -.+.-+|.||.
T Consensus       195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~--~~~~giIlTKl  269 (318)
T PRK10416        195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEA--VGLTGIILTKL  269 (318)
T ss_pred             CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhh--CCCCEEEEECC
Confidence            346788889999754221     111      1 112467899999998542  22222 1222211  13456889999


Q ss_pred             CCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHH
Q 029854           93 DVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF  129 (186)
Q Consensus        93 Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  129 (186)
                      |...+  .-....++...+.|+..++  +|++++++-
T Consensus       270 D~t~~--~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~  302 (318)
T PRK10416        270 DGTAK--GGVVFAIADELGIPIKFIG--VGEGIDDLQ  302 (318)
T ss_pred             CCCCC--ccHHHHHHHHHCCCEEEEe--CCCChhhCc
Confidence            95422  2334566777799999888  788887664

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=94.86  E-value=0.12  Score=42.86  Aligned_cols=88  Identities=15%  Similarity=0.132  Sum_probs=52.9

Q ss_pred             cccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChH-HHHHHHHcCCcEEEeccCCCCCch
Q 029854           48 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFE  126 (186)
Q Consensus        48 ~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~  126 (186)
                      +..+|++|-|.|+.++-.=. ....-+.+++..+...+|+|.|||||...-+... ...+.+++..--|..|..+..|=-
T Consensus       211 iDSSDVvvqVlDARDPmGTr-c~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTiAfHAsi~nsfGKg  289 (572)
T KOG2423|consen  211 IDSSDVVVQVLDARDPMGTR-CKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTIAFHASINNSFGKG  289 (572)
T ss_pred             hcccceeEEeeeccCCcccc-cHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCcceeeehhhcCccchh
Confidence            34789999999999985311 1233334445567899999999999975433333 234444444445666655656633


Q ss_pred             HHHHHHHHHHh
Q 029854          127 KPFLYLARKLA  137 (186)
Q Consensus       127 ~l~~~l~~~i~  137 (186)
                      .++ .|++++.
T Consensus       290 alI-~llRQf~  299 (572)
T KOG2423|consen  290 ALI-QLLRQFA  299 (572)
T ss_pred             HHH-HHHHHHH
Confidence            333 3334443

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=94.77  E-value=0.52  Score=36.91  Aligned_cols=49  Identities=16%  Similarity=0.148  Sum_probs=32.0

Q ss_pred             CEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854           84 PIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus        84 p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                      +++.|-||+|..   ..++.-++++.-  ..+.+|+...-|++.+++.+-..+.
T Consensus       240 ~ClYvYnKID~v---s~eevdrlAr~P--nsvViSC~m~lnld~lle~iWe~l~  288 (364)
T KOG1486|consen  240 KCLYVYNKIDQV---SIEEVDRLARQP--NSVVISCNMKLNLDRLLERIWEELN  288 (364)
T ss_pred             EEEEEeecccee---cHHHHHHHhcCC--CcEEEEeccccCHHHHHHHHHHHhc
Confidence            677777777742   112222444432  3667888888999999988887774

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=94.77  E-value=0.084  Score=42.59  Aligned_cols=84  Identities=18%  Similarity=0.181  Sum_probs=57.8

Q ss_pred             cccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCC----EEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCC
Q 029854           48 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIP----IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSN  122 (186)
Q Consensus        48 ~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~~~p----~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  122 (186)
                      ...||+++-|.|++.+..-+.....+.-+.+.- +..|    ++=|-||+|..+.....+      .++  .+.+||++|
T Consensus       255 VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E------~n~--~v~isaltg  326 (410)
T KOG0410|consen  255 VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE------KNL--DVGISALTG  326 (410)
T ss_pred             HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc------cCC--ccccccccC
Confidence            457999999999999976555444444444432 2233    556778888765443222      222  788999999


Q ss_pred             CCchHHHHHHHHHHhCC
Q 029854          123 YNFEKPFLYLARKLAGD  139 (186)
Q Consensus       123 ~gi~~l~~~l~~~i~~~  139 (186)
                      .|.+++...+-..+...
T Consensus       327 dgl~el~~a~~~kv~~~  343 (410)
T KOG0410|consen  327 DGLEELLKAEETKVASE  343 (410)
T ss_pred             ccHHHHHHHHHHHhhhh
Confidence            99999999988877543

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=94.71  E-value=0.34  Score=38.46  Aligned_cols=108  Identities=11%  Similarity=0.078  Sum_probs=55.9

Q ss_pred             ccceEEEEEEEEEECCeEEEEEEEeCCCccccC-------------------------Cccc--cccccCcEEEEEEeCC
Q 029854            9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-------------------------GLRD--GYYIHGQCAIIMFDVT   61 (186)
Q Consensus         9 ~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-------------------------~~~~--~~~~~ad~vilv~D~~   61 (186)
                      +|..+......+.-++..+.|.++||||-....                         ...+  ..=...|+||++++++
T Consensus        45 ~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt  124 (281)
T PF00735_consen   45 RTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPT  124 (281)
T ss_dssp             SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TT
T ss_pred             cccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCC
Confidence            455555555555558889999999999932110                         0011  1113589999999987


Q ss_pred             Chh-hHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccC----hHHHHHHHHcCCcEEEeccC
Q 029854           62 ARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AKQVTFHRKKNLQYYEISAK  120 (186)
Q Consensus        62 ~~~-s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~Sa~  120 (186)
                      ... +-.+    ++.+++....+++|-|+.|.|.......    .....-...++++++....-
T Consensus       125 ~~~L~~~D----i~~mk~Ls~~vNvIPvIaKaD~lt~~el~~~k~~i~~~l~~~~I~~f~f~~~  184 (281)
T PF00735_consen  125 GHGLKPLD----IEFMKRLSKRVNVIPVIAKADTLTPEELQAFKQRIREDLEENNIKIFDFPED  184 (281)
T ss_dssp             SSSS-HHH----HHHHHHHTTTSEEEEEESTGGGS-HHHHHHHHHHHHHHHHHTT--S------
T ss_pred             CccchHHH----HHHHHHhcccccEEeEEecccccCHHHHHHHHHHHHHHHHHcCceeeccccc
Confidence            532 2112    3345555557889999999998642211    11224445667776654443

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=94.57  E-value=0.058  Score=45.94  Aligned_cols=70  Identities=16%  Similarity=0.183  Sum_probs=51.6

Q ss_pred             CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 029854           23 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK   95 (186)
Q Consensus        23 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~   95 (186)
                      ++..+.+.|+|.||+-.|.+-....++-.||.+.|+|.-+.-..+.-.-..+.+.+   .+.-+++.||.|..
T Consensus        94 d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E---RIkPvlv~NK~DRA  163 (842)
T KOG0469|consen   94 DGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE---RIKPVLVMNKMDRA  163 (842)
T ss_pred             CCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh---hccceEEeehhhHH
Confidence            45678899999999999999999999999999999999876554432122222222   34456678999964

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=94.30  E-value=0.48  Score=34.75  Aligned_cols=90  Identities=9%  Similarity=-0.040  Sum_probs=64.8

Q ss_pred             cCcEEEEEEeCCChhhHHhHHHHHHHHHhh-cCCCCEEEEEeCCCCCCcccC-hHHHHHHHHcCCcEEEeccCCCCCchH
Q 029854           50 HGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEK  127 (186)
Q Consensus        50 ~ad~vilv~D~~~~~s~~~i~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~  127 (186)
                      ..|.|+|++|.+.+.|++.+..=+..+.-. .-++-++++-|-.......+. .+..+++..++++++.+.-.+..+...
T Consensus        64 rIDlIVFvinl~sk~SL~~ve~SL~~vd~~fflGKVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~  143 (176)
T PF11111_consen   64 RIDLIVFVINLHSKYSLQSVEASLSHVDPSFFLGKVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTS  143 (176)
T ss_pred             eeEEEEEEEecCCcccHHHHHHHHhhCChhhhccceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHH
Confidence            479999999999999988876655444332 235556666555554433333 446699999999999999998888887


Q ss_pred             HHHHHHHHHhCC
Q 029854          128 PFLYLARKLAGD  139 (186)
Q Consensus       128 l~~~l~~~i~~~  139 (186)
                      +-+.|++.+...
T Consensus       144 lAqRLL~~lqi~  155 (176)
T PF11111_consen  144 LAQRLLRMLQIC  155 (176)
T ss_pred             HHHHHHHHHHHH
Confidence            777777766543

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=94.13  E-value=0.53  Score=33.98  Aligned_cols=84  Identities=6%  Similarity=-0.100  Sum_probs=51.4

Q ss_pred             EEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHH
Q 029854           28 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFH  107 (186)
Q Consensus        28 ~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~  107 (186)
                      .+.++||++....  .....+..||.+|++++.+.. ++..+..+++.+.+. ....+.++.|+++............+.
T Consensus        64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~~~~~-~~~~~~iv~N~~~~~~~~~~~~~~~~~  139 (179)
T cd02036          64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEIS-SLRDADRVKGLLEAL-GIKVVGVIVNRVRPDMVEGGDMVEDIE  139 (179)
T ss_pred             CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcc-hHHHHHHHHHHHHHc-CCceEEEEEeCCcccccchhhHHHHHH
Confidence            5778899875432  344557889999999988764 555555666555542 223467899999864322111123444


Q ss_pred             HHcCCcEE
Q 029854          108 RKKNLQYY  115 (186)
Q Consensus       108 ~~~~~~~~  115 (186)
                      +.++.+++
T Consensus       140 ~~~~~~v~  147 (179)
T cd02036         140 EILGVPLL  147 (179)
T ss_pred             HHhCCCEE
Confidence            45566654

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=94.13  E-value=0.28  Score=40.42  Aligned_cols=38  Identities=18%  Similarity=0.174  Sum_probs=25.6

Q ss_pred             CCEEEEEeCCCCC--C-cccChHHHHHHHHcCCcEEEeccC
Q 029854           83 IPIVLCGNKVDVK--N-RQVKAKQVTFHRKKNLQYYEISAK  120 (186)
Q Consensus        83 ~p~ilv~nK~Dl~--~-~~~~~~~~~~~~~~~~~~~~~Sa~  120 (186)
                      +|+++++|+.|..  . .....+..+++.+.+.+++.+||+
T Consensus       200 KP~i~v~N~~e~~~~~~~~~~~~i~~~~~~~~~~~i~~sa~  240 (364)
T PRK09601        200 KPVLYVANVDEDDLADGNPYVKKVREIAAKEGAEVVVICAK  240 (364)
T ss_pred             CCeEEEEECCccccccccHHHHHHHHHHHHcCCeEEEEEHH
Confidence            6999999999852  1 111123345666778889999874

>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]

Probab=94.02  E-value=0.56  Score=36.94  Aligned_cols=80  Identities=11%  Similarity=0.098  Sum_probs=56.4

Q ss_pred             EEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHH
Q 029854           27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTF  106 (186)
Q Consensus        27 ~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~  106 (186)
                      ..+.|+|+|-.-  .--.-..+.+||.+|+|--+|-. ++-+++..++.+.+.  +.|..+|.||.++..   . +..++
T Consensus       164 ~~~~IIDsaaG~--gCpVi~sl~~aD~ai~VTEPTp~-glhD~kr~~el~~~f--~ip~~iViNr~~~g~---s-~ie~~  234 (284)
T COG1149         164 ADLLIIDSAAGT--GCPVIASLKGADLAILVTEPTPF-GLHDLKRALELVEHF--GIPTGIVINRYNLGD---S-EIEEY  234 (284)
T ss_pred             cceeEEecCCCC--CChHHHhhccCCEEEEEecCCcc-chhHHHHHHHHHHHh--CCceEEEEecCCCCc---h-HHHHH
Confidence            356677874321  11223457899999999988853 566677777777665  899999999995432   2 66788


Q ss_pred             HHHcCCcEE
Q 029854          107 HRKKNLQYY  115 (186)
Q Consensus       107 ~~~~~~~~~  115 (186)
                      +.+.+++++
T Consensus       235 ~~e~gi~il  243 (284)
T COG1149         235 CEEEGIPIL  243 (284)
T ss_pred             HHHcCCCee
Confidence            999988765

>PRK14974 cell division protein FtsY; Provisional

Probab=93.24  E-value=0.42  Score=38.99  Aligned_cols=95  Identities=14%  Similarity=0.026  Sum_probs=56.1

Q ss_pred             EEEEEEeCCCccccCC-cc---ccc--cccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccC
Q 029854           27 IRFYCWDTAGQEKFGG-LR---DGY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK  100 (186)
Q Consensus        27 ~~l~l~Dt~G~~~~~~-~~---~~~--~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~  100 (186)
                      +.+.|+||+|.-.... +.   +..  ....+.+++|.|++......   .....+...  -..--+|.||.|...+.  
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~---~~a~~f~~~--~~~~giIlTKlD~~~~~--  295 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAV---EQAREFNEA--VGIDGVILTKVDADAKG--  295 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHH---HHHHHHHhc--CCCCEEEEeeecCCCCc--
Confidence            4577889999754321 11   111  12578899999997643211   112222221  12355778999974322  


Q ss_pred             hHHHHHHHHcCCcEEEeccCCCCCchHHHH
Q 029854          101 AKQVTFHRKKNLQYYEISAKSNYNFEKPFL  130 (186)
Q Consensus       101 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  130 (186)
                      -....++...+.|+..++  +|.+++++..
T Consensus       296 G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~  323 (336)
T PRK14974        296 GAALSIAYVIGKPILFLG--VGQGYDDLIP  323 (336)
T ss_pred             cHHHHHHHHHCcCEEEEe--CCCChhhccc
Confidence            234455666788988887  7898877654

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.23  E-value=1.8  Score=35.59  Aligned_cols=125  Identities=13%  Similarity=0.164  Sum_probs=76.4

Q ss_pred             cccceEEEEEEEEEECCeEEEEEEEeCCCcccc-------------------------CCccccccc--cCcEEEEEEeC
Q 029854            8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-------------------------GGLRDGYYI--HGQCAIIMFDV   60 (186)
Q Consensus         8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------------------------~~~~~~~~~--~ad~vilv~D~   60 (186)
                      ..|+.+......+.-+|..++|++.||||-...                         ..+.+..+.  .+|+|++.+.+
T Consensus        60 ~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P  139 (366)
T KOG2655|consen   60 KETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISP  139 (366)
T ss_pred             cccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCC
Confidence            347777777777776899999999999993221                         112223333  68999999998


Q ss_pred             CChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccCh----HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029854           61 TARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        61 ~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      +... ...+  =+..+++.+..+.+|-|+.|.|........    ...+-+..++++++....-..   ++-+....+.+
T Consensus       140 ~ghg-L~p~--Di~~Mk~l~~~vNiIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~fp~~~~---d~~~~~~~~~l  213 (366)
T KOG2655|consen  140 TGHG-LKPL--DIEFMKKLSKKVNLIPVIAKADTLTKDELNQFKKRIRQDIEEHNIKVFDFPTDES---DEELKEEEQDL  213 (366)
T ss_pred             CCCC-CcHh--hHHHHHHHhccccccceeeccccCCHHHHHHHHHHHHHHHHHcCcceecCCCCcc---hhhhHHHHHHH
Confidence            7641 1111  123444555567888888999986433221    223455666777776655544   44554555555


Q ss_pred             hC
Q 029854          137 AG  138 (186)
Q Consensus       137 ~~  138 (186)
                      ..
T Consensus       214 ~~  215 (366)
T KOG2655|consen  214 KS  215 (366)
T ss_pred             hh
Confidence            44

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=93.12  E-value=0.22  Score=41.08  Aligned_cols=108  Identities=19%  Similarity=0.246  Sum_probs=54.5

Q ss_pred             EEEEEeCCCccccCCccccc-----cccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhcCCCCEEEEEeCCCCC--C---
Q 029854           28 RFYCWDTAGQEKFGGLRDGY-----YIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVK--N---   96 (186)
Q Consensus        28 ~l~l~Dt~G~~~~~~~~~~~-----~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~~~~p~ilv~nK~Dl~--~---   96 (186)
                      .+.+||.||...-......|     +..-|.+|++.+..    |.... .....+++.  ++|+.+|-+|+|.-  +   
T Consensus        87 nv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s~r----f~~ndv~La~~i~~~--gK~fyfVRTKvD~Dl~~~~~  160 (376)
T PF05049_consen   87 NVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISSER----FTENDVQLAKEIQRM--GKKFYFVRTKVDSDLYNERR  160 (376)
T ss_dssp             TEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEESSS------HHHHHHHHHHHHT--T-EEEEEE--HHHHHHHHHC
T ss_pred             CCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeCCC----CchhhHHHHHHHHHc--CCcEEEEEecccccHhhhhc
Confidence            57899999965433333333     45679888877644    32222 233444443  78999999999961  1   


Q ss_pred             ---cccC-----hHHHHHH----HHcCC---cEEEeccCCC--CCchHHHHHHHHHHhCCCC
Q 029854           97 ---RQVK-----AKQVTFH----RKKNL---QYYEISAKSN--YNFEKPFLYLARKLAGDPN  141 (186)
Q Consensus        97 ---~~~~-----~~~~~~~----~~~~~---~~~~~Sa~~~--~gi~~l~~~l~~~i~~~~~  141 (186)
                         +.-.     ++.++-|    ++.++   ++|-+|+.+-  .+...+.+.|.+.+.....
T Consensus       161 ~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr  222 (376)
T PF05049_consen  161 RKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKR  222 (376)
T ss_dssp             C-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGH
T ss_pred             cCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHH
Confidence               1111     1112222    12233   5888998754  4577888888888876543

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PF14331 ImcF-related_N: ImcF-related N-terminal domain

Probab=93.11  E-value=0.24  Score=39.03  Aligned_cols=88  Identities=14%  Similarity=0.151  Sum_probs=46.8

Q ss_pred             cCcEEEEEEeCCChhhHH----hHHH-------HHHHHHhhc-CCCCEEEEEeCCCCCCc------ccChHHHHHHHHcC
Q 029854           50 HGQCAIIMFDVTARLTYK----NVPT-------WHRDLCRVC-ENIPIVLCGNKVDVKNR------QVKAKQVTFHRKKN  111 (186)
Q Consensus        50 ~ad~vilv~D~~~~~s~~----~i~~-------~~~~~~~~~-~~~p~ilv~nK~Dl~~~------~~~~~~~~~~~~~~  111 (186)
                      ..+|||+++|+.+-..-.    .+..       -+.++.... -..|+.||.||+|+...      ....+  ....-+|
T Consensus        25 PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~~PVYvv~Tk~D~l~GF~ef~~~L~~~--~r~q~lG  102 (266)
T PF14331_consen   25 PLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVRLPVYVVFTKCDLLPGFDEFFSDLSEE--EREQVLG  102 (266)
T ss_pred             CCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCCCCeEeeeECCCcccCHHHHHHhCCHH--HHhCCcc
Confidence            469999999985422110    1222       233333322 47999999999998641      11111  1122334


Q ss_pred             CcEEEeccCCCCC---chHHHHHHHHHHhCC
Q 029854          112 LQYYEISAKSNYN---FEKPFLYLARKLAGD  139 (186)
Q Consensus       112 ~~~~~~Sa~~~~g---i~~l~~~l~~~i~~~  139 (186)
                      +.+-.-....+..   +.+.|..+...+...
T Consensus       103 ~t~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  133 (266)
T PF14331_consen  103 FTFPYDEDADGDAWAWFDEEFDELVARLNAR  133 (266)
T ss_pred             cccCCccccccchHHHHHHHHHHHHHHHHHH
Confidence            3322222333333   777777777666543

>PRK13505 formate--tetrahydrofolate ligase; Provisional

Probab=92.98  E-value=1.2  Score=38.64  Aligned_cols=71  Identities=11%  Similarity=0.071  Sum_probs=51.3

Q ss_pred             HHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEec--cCCCCCchHHHHHHHHHHhC
Q 029854           66 YKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEIS--AKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        66 ~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~S--a~~~~gi~~l~~~l~~~i~~  138 (186)
                      +.++.+-++.++++  ++|++|++||.|.-.........++|.+.++++..+.  ++=|.|-.++-+.+++.+.+
T Consensus       358 l~NL~RHIenvr~F--GvPvVVAINKFd~DTe~Ei~~I~~~c~e~Gv~va~~~~~~~Gg~Gai~LA~aVveA~~~  430 (557)
T PRK13505        358 FANLERHIENIRKF--GVPVVVAINKFVTDTDAEIAALKELCEELGVEVALSEVWAKGGEGGVELAEKVVELIEE  430 (557)
T ss_pred             HHHHHHHHHHHHHc--CCCEEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEecccccCCcchHHHHHHHHHHHhc
Confidence            34444455555553  8999999999997544344556689999999887555  45677888888888887774

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=92.61  E-value=2.4  Score=34.80  Aligned_cols=107  Identities=12%  Similarity=0.162  Sum_probs=65.7

Q ss_pred             ccccceEEEEEEEEEECCeEEEEEEEeCCCcccc---CCc-----------------------ccccc--ccCcEEEEEE
Q 029854            7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF---GGL-----------------------RDGYY--IHGQCAIIMF   58 (186)
Q Consensus         7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~---~~~-----------------------~~~~~--~~ad~vilv~   58 (186)
                      ..||+-+.+....+.-+|..++|.++||||--.+   ...                       +...+  ..+|+|++.+
T Consensus        62 ~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI  141 (373)
T COG5019          62 TSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFI  141 (373)
T ss_pred             CCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEe
Confidence            4678878888777777899999999999994321   111                       11112  2589999999


Q ss_pred             eCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCccc----ChHHHHHHHHcCCcEEE
Q 029854           59 DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYE  116 (186)
Q Consensus        59 D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~  116 (186)
                      -++... ...+  =+..+++....+-+|=|+.|.|......    .....+-...+++++|.
T Consensus       142 ~Ptgh~-l~~~--DIe~Mk~ls~~vNlIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~  200 (373)
T COG5019         142 RPTGHG-LKPL--DIEAMKRLSKRVNLIPVIAKADTLTDDELAEFKERIREDLEQYNIPVFD  200 (373)
T ss_pred             cCCCCC-CCHH--HHHHHHHHhcccCeeeeeeccccCCHHHHHHHHHHHHHHHHHhCCceeC
Confidence            887642 1111  1233444445677888889999864221    11223444566677664

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=92.16  E-value=0.57  Score=31.26  Aligned_cols=61  Identities=10%  Similarity=-0.002  Sum_probs=41.9

Q ss_pred             EEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C-CCCEEEEEeC
Q 029854           28 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E-NIPIVLCGNK   91 (186)
Q Consensus        28 ~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~-~~p~ilv~nK   91 (186)
                      .+.++|||+...  ......+..||.++++.+.+.. +...+..+++.+.+.. + ...+.+|+|+
T Consensus        44 D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~~~-s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          44 DYVVVDLGRSLD--EVSLAALDQADRVFLVTQQDLP-SIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             CEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCChH-HHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            567889987543  3344577889999999988764 6666667776666543 2 3567677775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=92.06  E-value=0.43  Score=38.30  Aligned_cols=90  Identities=14%  Similarity=0.116  Sum_probs=54.2

Q ss_pred             ccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHH-HHHHHHcCCcEEEeccC--C
Q 029854           45 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAK--S  121 (186)
Q Consensus        45 ~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~Sa~--~  121 (186)
                      ..-++..|++|=|-|+.-+-|-++     ..++...+.+|-|||.||+||.+....... ..+..+....++..++.  .
T Consensus        41 ~~~l~~~D~iiEvrDaRiPLssrn-----~~~~~~~~~k~riiVlNK~DLad~~~~k~~iq~~~~~~~~~~~~~~c~~~~  115 (335)
T KOG2485|consen   41 QNRLPLVDCIIEVRDARIPLSSRN-----ELFQDFLPPKPRIIVLNKMDLADPKEQKKIIQYLEWQNLESYIKLDCNKDC  115 (335)
T ss_pred             HhhcccccEEEEeeccccCCcccc-----HHHHHhcCCCceEEEEecccccCchhhhHHHHHHHhhcccchhhhhhhhhh
Confidence            445678999999999987755333     122233347899999999999984444443 34444433344443333  4


Q ss_pred             CCCchHHHHHHHHHHhCC
Q 029854          122 NYNFEKPFLYLARKLAGD  139 (186)
Q Consensus       122 ~~gi~~l~~~l~~~i~~~  139 (186)
                      +.++..++..+.....+.
T Consensus       116 ~~~v~~l~~il~~~~~~l  133 (335)
T KOG2485|consen  116 NKQVSPLLKILTILSEEL  133 (335)
T ss_pred             hhccccHHHHHHHHHHHH
Confidence            434666666555554443

>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases

Probab=91.39  E-value=2.8  Score=30.67  Aligned_cols=86  Identities=12%  Similarity=0.187  Sum_probs=58.3

Q ss_pred             cccCcEEEEEEeCCChh-------hHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccC
Q 029854           48 YIHGQCAIIMFDVTARL-------TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAK  120 (186)
Q Consensus        48 ~~~ad~vilv~D~~~~~-------s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~  120 (186)
                      ++...+=.+++|..|--       -..++..|++++++......++||.|-.-..++....+...+.+.++++++.-+++
T Consensus        36 Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpvl~h~~k  115 (168)
T PF09419_consen   36 LKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIPVLRHRAK  115 (168)
T ss_pred             hhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCcEEEeCCC
Confidence            44444455666665421       12456789999988765456999999875554333445667888899999999998


Q ss_pred             CCCCchHHHHHHH
Q 029854          121 SNYNFEKPFLYLA  133 (186)
Q Consensus       121 ~~~gi~~l~~~l~  133 (186)
                      ...+..++...+.
T Consensus       116 KP~~~~~i~~~~~  128 (168)
T PF09419_consen  116 KPGCFREILKYFK  128 (168)
T ss_pred             CCccHHHHHHHHh
Confidence            8877776666554

All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=90.82  E-value=0.13  Score=40.60  Aligned_cols=103  Identities=14%  Similarity=0.205  Sum_probs=59.1

Q ss_pred             EEEEEEeCCCc----------cccCCcccccccc---CcEEEEEEeCCChh-hHH-hHHHHHHHHHhhcCCCCEEEEEeC
Q 029854           27 IRFYCWDTAGQ----------EKFGGLRDGYYIH---GQCAIIMFDVTARL-TYK-NVPTWHRDLCRVCENIPIVLCGNK   91 (186)
Q Consensus        27 ~~l~l~Dt~G~----------~~~~~~~~~~~~~---ad~vilv~D~~~~~-s~~-~i~~~~~~~~~~~~~~p~ilv~nK   91 (186)
                      -.+.+.|.||-          ..+..+...|+.+   --.+.+++|++.+. .-+ ....|+.+     .++|+.+|.||
T Consensus       183 ~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge-----~~VP~t~vfTK  257 (320)
T KOG2486|consen  183 KSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE-----NNVPMTSVFTK  257 (320)
T ss_pred             ceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh-----cCCCeEEeeeh
Confidence            35566799992          1223344455432   23456667776542 111 12345544     48999999999


Q ss_pred             CCCCCccc------ChH----HH---HHHHHcCCcEEEeccCCCCCchHHHHHHHH
Q 029854           92 VDVKNRQV------KAK----QV---TFHRKKNLQYYEISAKSNYNFEKPFLYLAR  134 (186)
Q Consensus        92 ~Dl~~~~~------~~~----~~---~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  134 (186)
                      ||......      ...    ..   +.+.....+++.+|+.++.|++.++-.+..
T Consensus       258 ~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  258 CDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             hhhhhhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeeehhh
Confidence            99763221      111    11   111222356778999999999988766653

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=90.79  E-value=0.93  Score=40.09  Aligned_cols=91  Identities=13%  Similarity=0.203  Sum_probs=54.4

Q ss_pred             EEEEEeCCCccc---cCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCccc-ChH-
Q 029854           28 RFYCWDTAGQEK---FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-KAK-  102 (186)
Q Consensus        28 ~l~l~Dt~G~~~---~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-~~~-  102 (186)
                      .+.+.|.||..-   ..........+||++|||..+-+.-+..+ ..++..+.+.  ..-++|+.||+|..-... ..+ 
T Consensus       207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~~--KpniFIlnnkwDasase~ec~e~  283 (749)
T KOG0448|consen  207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSEE--KPNIFILNNKWDASASEPECKED  283 (749)
T ss_pred             cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhcc--CCcEEEEechhhhhcccHHHHHH
Confidence            456779999653   34455667789999999999887644332 3344443332  334778889999864321 122 


Q ss_pred             HHHHHHHcC--------CcEEEeccCC
Q 029854          103 QVTFHRKKN--------LQYYEISAKS  121 (186)
Q Consensus       103 ~~~~~~~~~--------~~~~~~Sa~~  121 (186)
                      ..+...+++        -.++.+||+.
T Consensus       284 V~~Qi~eL~v~~~~eA~DrvfFVS~~e  310 (749)
T KOG0448|consen  284 VLKQIHELSVVTEKEAADRVFFVSAKE  310 (749)
T ss_pred             HHHHHHhcCcccHhhhcCeeEEEeccc
Confidence            122222332        2488899874

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=90.70  E-value=1.1  Score=38.01  Aligned_cols=84  Identities=11%  Similarity=0.069  Sum_probs=48.1

Q ss_pred             EEEEEeCCCccccCCc-----cc-cccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC-EEEEEeCCCCCCcccC
Q 029854           28 RFYCWDTAGQEKFGGL-----RD-GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVK  100 (186)
Q Consensus        28 ~l~l~Dt~G~~~~~~~-----~~-~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~  100 (186)
                      .+.|+||+|.-.....     .. ..+..++.+++|+|++...   +.......+..   ..+ .-+|.||.|...+  -
T Consensus       177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~---~l~i~gvIlTKlD~~a~--~  248 (437)
T PRK00771        177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHE---AVGIGGIIITKLDGTAK--G  248 (437)
T ss_pred             CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHh---cCCCCEEEEecccCCCc--c
Confidence            6788899997553211     11 1133588999999997642   22122222222   233 3477899996432  1


Q ss_pred             hHHHHHHHHcCCcEEEecc
Q 029854          101 AKQVTFHRKKNLQYYEISA  119 (186)
Q Consensus       101 ~~~~~~~~~~~~~~~~~Sa  119 (186)
                      -.........+.|+.+++.
T Consensus       249 G~~ls~~~~~~~Pi~fig~  267 (437)
T PRK00771        249 GGALSAVAETGAPIKFIGT  267 (437)
T ss_pred             cHHHHHHHHHCcCEEEEec
Confidence            2344566667777766654

>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ

Probab=90.30  E-value=1.3  Score=33.94  Aligned_cols=65  Identities=11%  Similarity=0.047  Sum_probs=42.6

Q ss_pred             EEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHh-hcCCCCEEEEEeCCCCC
Q 029854           28 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVK   95 (186)
Q Consensus        28 ~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~-~~~~~p~ilv~nK~Dl~   95 (186)
                      .+.++|||+.  ...+....+..||.+|+++..+. .++..+...+..+.+ .....++-+|.|+.+..
T Consensus       116 D~viiD~pp~--~~~~~~~~l~~ad~vii~~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~~  181 (246)
T TIGR03371       116 DWVLIDVPRG--PSPITRQALAAADLVLVVVNADA-ACYATLHQQALALFAGSGPRIGPHFLINQFDPA  181 (246)
T ss_pred             CEEEEECCCC--chHHHHHHHHhCCeEEEEeCCCH-HHHHHHHHHHHHHhhcccccccceEEeeccCcc
Confidence            5778899883  34456677889999999998864 355555432222222 22345677899999854

Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]

Probab=89.80  E-value=1.7  Score=35.69  Aligned_cols=69  Identities=16%  Similarity=0.196  Sum_probs=55.1

Q ss_pred             eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCEEEEEeCCCCCC
Q 029854           25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN   96 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~~~p~ilv~nK~Dl~~   96 (186)
                      ..+.+.++|.|  ..+......++..||.+++|++.+=. +....++.+..+.+.. ...+..++.|+.....
T Consensus       216 ~~~~~vV~Dlp--~~~~~~t~~vL~~Sd~iviv~e~sl~-slR~ak~lld~l~~~r~~~~~p~lv~n~~~~~~  285 (366)
T COG4963         216 GSFDFVVVDLP--NIWTDWTRQVLSGSDEIVIVAEPSLA-SLRNAKELLDELKRLRPNDPKPILVLNRVGVPK  285 (366)
T ss_pred             ccCCeEEEcCC--CccchHHHHHHhcCCeEEEEecccHH-HHHHHHHHHHHHHHhCCCCCCceEEeeecCCCC
Confidence            46778888999  45566778899999999999998854 7777788888888876 4567888999998653

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

Probab=89.71  E-value=2.9  Score=31.37  Aligned_cols=89  Identities=10%  Similarity=0.035  Sum_probs=49.8

Q ss_pred             eEEEEEEEeCCCccccCCccc-cccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCCC-EEEEEeCCCCCCcccC
Q 029854           25 GKIRFYCWDTAGQEKFGGLRD-GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIP-IVLCGNKVDVKNRQVK  100 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~~~~~-~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~p-~ilv~nK~Dl~~~~~~  100 (186)
                      ..+.+.|+||+|......+.. ...+.||.+|+++..+. .+...+...++.+.+..  .+.+ ..++.|+++..  ...
T Consensus       115 ~~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~~-~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~--~~~  191 (212)
T cd02117         115 DDLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGEF-MALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD--RET  191 (212)
T ss_pred             cCCCEEEEecCCCceecccccccccccCcEEEEEecccH-HHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc--cHH
Confidence            357888899976543223211 11247999999998864 35544444444444332  1333 44899999853  111


Q ss_pred             hHHHHHHHHcCCcEEE
Q 029854          101 AKQVTFHRKKNLQYYE  116 (186)
Q Consensus       101 ~~~~~~~~~~~~~~~~  116 (186)
                      ....++.+.++.+++.
T Consensus       192 ~~~~~~~~~~~~~vl~  207 (212)
T cd02117         192 ELIDAFAERLGTQVIH  207 (212)
T ss_pred             HHHHHHHHHcCCCEEE
Confidence            2234566666665443

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=89.56  E-value=0.5  Score=44.88  Aligned_cols=46  Identities=15%  Similarity=0.190  Sum_probs=32.6

Q ss_pred             cCcEEEEEEeCCChhh--H-------HhHHHHHHHHHhhc-CCCCEEEEEeCCCCC
Q 029854           50 HGQCAIIMFDVTARLT--Y-------KNVPTWHRDLCRVC-ENIPIVLCGNKVDVK   95 (186)
Q Consensus        50 ~ad~vilv~D~~~~~s--~-------~~i~~~~~~~~~~~-~~~p~ilv~nK~Dl~   95 (186)
                      ..+|||+++|+.+--+  -       ..++..++++.+.. -..|+.|+.||||+.
T Consensus       201 plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll  256 (1169)
T TIGR03348       201 PLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLL  256 (1169)
T ss_pred             CCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhh
Confidence            5899999999965421  1       23444555555443 589999999999985

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=88.68  E-value=3.8  Score=36.68  Aligned_cols=70  Identities=9%  Similarity=0.051  Sum_probs=44.5

Q ss_pred             EEEEEEeCCCccccCC-------c---cccccc--cCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC---CCCEEEEEeC
Q 029854           27 IRFYCWDTAGQEKFGG-------L---RDGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNK   91 (186)
Q Consensus        27 ~~l~l~Dt~G~~~~~~-------~---~~~~~~--~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~---~~p~ilv~nK   91 (186)
                      ..+.++||||......       +   ...+++  ++|++|+|..++.......-..+++.+...+.   -..+|||.|.
T Consensus       166 ~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFTh  245 (763)
T TIGR00993       166 VKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTH  245 (763)
T ss_pred             ceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeC
Confidence            4677889999765321       1   112333  58999999887643322222356777766653   2578999999


Q ss_pred             CCCCC
Q 029854           92 VDVKN   96 (186)
Q Consensus        92 ~Dl~~   96 (186)
                      .|..+
T Consensus       246 gD~lp  250 (763)
T TIGR00993       246 AASAP  250 (763)
T ss_pred             CccCC
Confidence            99864

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional

Probab=88.25  E-value=7.3  Score=30.35  Aligned_cols=84  Identities=11%  Similarity=0.042  Sum_probs=49.2

Q ss_pred             EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCCCCEE-EEEeCCCCCCcccChH
Q 029854           26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIV-LCGNKVDVKNRQVKAK  102 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~~p~i-lv~nK~Dl~~~~~~~~  102 (186)
                      .+.+.|+||+|.-.... ....+..||.+|+++.++ ..++..+...++.+...  ..+.+++ ++.|+.+..     ..
T Consensus       117 ~yD~viIDt~g~~~~~~-~~~~l~~AD~viip~~~~-~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~~-----~~  189 (270)
T PRK13185        117 DYDVILFDVLGDVVCGG-FAAPLQYADYALIVTAND-FDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAGT-----DL  189 (270)
T ss_pred             cCCEEEEecCCCcccCc-ccchhhhCcEEEEEecCc-hhhHHHHHHHHHHHHhhhhccCCCceEEEEeccChH-----HH
Confidence            47788999977543222 233467799999999664 34555555544444322  2456644 788997621     22


Q ss_pred             HHHHHHHcCCcEEE
Q 029854          103 QVTFHRKKNLQYYE  116 (186)
Q Consensus       103 ~~~~~~~~~~~~~~  116 (186)
                      ..++...++.+++.
T Consensus       190 ~~~~~~~~g~~vl~  203 (270)
T PRK13185        190 IDKFNEAVGLKVLA  203 (270)
T ss_pred             HHHHHHHcCCCEEE
Confidence            33455556655543

>TIGR00959 ffh signal recognition particle protein

Probab=87.81  E-value=2.2  Score=35.98  Aligned_cols=87  Identities=11%  Similarity=0.066  Sum_probs=49.3

Q ss_pred             EEEEEEEeCCCccccCC-cccc-----ccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCccc
Q 029854           26 KIRFYCWDTAGQEKFGG-LRDG-----YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV   99 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~-~~~~-----~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~   99 (186)
                      .+.+.|+||+|.-.... +...     ..-..+.++||+|++..   ++...+...+....  ...=+|.||.|...+. 
T Consensus       182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v--~i~giIlTKlD~~~~~-  255 (428)
T TIGR00959       182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL--GLTGVVLTKLDGDARG-  255 (428)
T ss_pred             CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC--CCCEEEEeCccCcccc-
Confidence            35678889999644322 1110     12247889999998754   23333444443322  1234778999953222 


Q ss_pred             ChHHHHHHHHcCCcEEEecc
Q 029854          100 KAKQVTFHRKKNLQYYEISA  119 (186)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~Sa  119 (186)
                       -.....+...++|+..++.
T Consensus       256 -G~~lsi~~~~~~PI~fi~~  274 (428)
T TIGR00959       256 -GAALSVRSVTGKPIKFIGV  274 (428)
T ss_pred             -cHHHHHHHHHCcCEEEEeC
Confidence             2245666677788766654

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>cd03114 ArgK-like The function of this protein family is unkown

Probab=86.58  E-value=1.6  Score=31.05  Aligned_cols=58  Identities=12%  Similarity=0.072  Sum_probs=35.8

Q ss_pred             EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCC
Q 029854           26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD   93 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~D   93 (186)
                      .+.+.|+||+|...   ....++..||-+|++..+.-.+.+-- .++  .+.    ..--++++||+|
T Consensus        91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~-~k~--~~~----~~~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQA-IKA--GIM----EIADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHH-hhh--hHh----hhcCEEEEeCCC
Confidence            57788899988542   22348899999999998873322221 111  111    223467789987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=86.14  E-value=3.8  Score=29.53  Aligned_cols=84  Identities=10%  Similarity=0.028  Sum_probs=46.0

Q ss_pred             EEEEEEEeCCCccccCC----ccccc--cccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCccc
Q 029854           26 KIRFYCWDTAGQEKFGG----LRDGY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV   99 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~----~~~~~--~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~   99 (186)
                      ...+.+.||+|...+..    ....+  ....+.+++|+|.....+   ...+...+.+...  ..-+|.||.|...+. 
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~~--~~~viltk~D~~~~~-  155 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEALG--ITGVILTKLDGDARG-  155 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhCC--CCEEEEECCcCCCCc-
Confidence            34566789999743211    11111  124899999999965432   2233444433222  355777999975432 


Q ss_pred             ChHHHHHHHHcCCcEEE
Q 029854          100 KAKQVTFHRKKNLQYYE  116 (186)
Q Consensus       100 ~~~~~~~~~~~~~~~~~  116 (186)
                       ......+...++|+..
T Consensus       156 -g~~~~~~~~~~~p~~~  171 (173)
T cd03115         156 -GAALSIRAVTGKPIKF  171 (173)
T ss_pred             -chhhhhHHHHCcCeEe
Confidence             2233456666666544

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>TIGR01007 eps_fam capsular exopolysaccharide family

Probab=85.79  E-value=3  Score=31.06  Aligned_cols=66  Identities=15%  Similarity=0.077  Sum_probs=41.6

Q ss_pred             EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC-EEEEEeCCCCC
Q 029854           26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVK   95 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p-~ilv~nK~Dl~   95 (186)
                      .+.+.|+|+|..... .......+.+|.+|+|.+.... +...+...++.+.+.  +.+ +-+|.||.+..
T Consensus       127 ~yD~ViiD~pp~~~~-~~~~~~~~~~D~vilV~~~~~~-~~~~~~~~~~~l~~~--~~~~~gvVlN~~~~~  193 (204)
T TIGR01007       127 YFDYIIIDTPPIGTV-TDAAIIARACDASILVTDAGEI-KKRDVQKAKEQLEQT--GSNFLGVVLNKVDIS  193 (204)
T ss_pred             cCCEEEEeCCCcccc-chHHHHHHhCCeEEEEEECCCC-CHHHHHHHHHHHHhC--CCCEEEEEEeCcccc
Confidence            467788899863211 1122345679999999999643 444555555555443  334 55899999864

This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=84.76  E-value=14  Score=28.95  Aligned_cols=111  Identities=14%  Similarity=0.109  Sum_probs=59.4

Q ss_pred             cccceEEEEEEEEEECCeEEEEEEEeCCCcccc---CCcc-----------------------ccccc--cCcEEEEEEe
Q 029854            8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF---GGLR-----------------------DGYYI--HGQCAIIMFD   59 (186)
Q Consensus         8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~---~~~~-----------------------~~~~~--~ad~vilv~D   59 (186)
                      .-|+.+-.....+.-+|.+.++.++||||-...   ...|                       ...+.  .+++|++.+.
T Consensus        85 pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~  164 (336)
T KOG1547|consen   85 PKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIP  164 (336)
T ss_pred             cceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeC
Confidence            345555555555555788899999999993221   1111                       11222  4789999998


Q ss_pred             CCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCC---cccC-hHHHHHHHHcCCcEEEeccCC
Q 029854           60 VTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN---RQVK-AKQVTFHRKKNLQYYEISAKS  121 (186)
Q Consensus        60 ~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~---~~~~-~~~~~~~~~~~~~~~~~Sa~~  121 (186)
                      ++.. ++.-+.  ++.+++.+.-.-++-|+-|.|...   +... +...+-...+++.++.-.+.+
T Consensus       165 ptGh-sLrplD--ieflkrLt~vvNvvPVIakaDtlTleEr~~FkqrI~~el~~~~i~vYPq~~fd  227 (336)
T KOG1547|consen  165 PTGH-SLRPLD--IEFLKRLTEVVNVVPVIAKADTLTLEERSAFKQRIRKELEKHGIDVYPQDSFD  227 (336)
T ss_pred             CCCC-ccCccc--HHHHHHHhhhheeeeeEeecccccHHHHHHHHHHHHHHHHhcCcccccccccc
Confidence            8754 322221  122333333455777778999642   1111 112233345666666554443

>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases

Probab=84.53  E-value=2.1  Score=31.26  Aligned_cols=68  Identities=15%  Similarity=0.079  Sum_probs=49.0

Q ss_pred             EEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCC-CEEEEEeCCCCCCc
Q 029854           27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI-PIVLCGNKVDVKNR   97 (186)
Q Consensus        27 ~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~-p~ilv~nK~Dl~~~   97 (186)
                      +.+.|+|||+.....  ....+..||.+|++++.+.. +...+..+++.+.+..... .+.+|.|+.+..+.
T Consensus        95 yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~~-~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~~~  163 (195)
T PF01656_consen   95 YDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDPS-SIEGAERLIELLKRLGKKLKIIGVVINRVDPGNE  163 (195)
T ss_dssp             SSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSHH-HHHHHHHHHHHHHHHTHTEEEEEEEEEEETSCCH
T ss_pred             ccceeecccccccHH--HHHHHHhCceeeeecCCcHH-HHHHHHHHHHHHHHhccccceEEEEEeeeCCCcc
Confidence            567788998754333  56677899999999999864 5667777777777654222 45789999987543

These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....

>PRK13849 putative crown gall tumor protein VirC1; Provisional

Probab=84.07  E-value=4  Score=31.39  Aligned_cols=66  Identities=15%  Similarity=0.098  Sum_probs=44.7

Q ss_pred             eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHh----hcCCCCEEEEEeCCC
Q 029854           25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR----VCENIPIVLCGNKVD   93 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~----~~~~~p~ilv~nK~D   93 (186)
                      ..+.+.|+||||...  ......+..||.+|+.+.++.. ++.....++..+..    ..++.|..++.|.++
T Consensus        82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~-d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~  151 (231)
T PRK13849         82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPL-DIDEALSTYRYVIELLLSENLAIPTAILRQRVP  151 (231)
T ss_pred             CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHH-HHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence            357888999998553  4455677889999999887653 44444444433332    235778889999986

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=82.75  E-value=6.8  Score=31.84  Aligned_cols=66  Identities=18%  Similarity=0.086  Sum_probs=39.6

Q ss_pred             cCcEEEEEEeCCChhhHHh-HHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHHHHcC--CcEEEecc
Q 029854           50 HGQCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISA  119 (186)
Q Consensus        50 ~ad~vilv~D~~~~~s~~~-i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~Sa  119 (186)
                      .-|++|-|+|+.+-..-.. +..........    -=+|+.||.|+.+...........+..+  .+++.++.
T Consensus       116 ~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~----AD~ivlNK~Dlv~~~~l~~l~~~l~~lnp~A~i~~~~~  184 (323)
T COG0523         116 RLDGVVTVVDAAHFLEGLDAIAELAEDQLAF----ADVIVLNKTDLVDAEELEALEARLRKLNPRARIIETSY  184 (323)
T ss_pred             eeceEEEEEeHHHhhhhHHHHHHHHHHHHHh----CcEEEEecccCCCHHHHHHHHHHHHHhCCCCeEEEccc
Confidence            3688999999987654322 33333332222    2467789999987553233344455554  56777777

>cd02032 Bchl_like This family of proteins contains bchL and chlL

Probab=81.31  E-value=6.5  Score=30.59  Aligned_cols=83  Identities=12%  Similarity=0.042  Sum_probs=46.4

Q ss_pred             EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCCCCEE-EEEeCCCCCCcccChH
Q 029854           26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIV-LCGNKVDVKNRQVKAK  102 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~~p~i-lv~nK~Dl~~~~~~~~  102 (186)
                      .+.+.|+||+|..... .....+..||.+|++..++. .++..+...++.+...  ..+.+++ +|.|+++..     ..
T Consensus       115 ~yD~vIIDt~g~~~~~-~~~~al~~aD~vlip~~p~~-~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~~-----~~  187 (267)
T cd02032         115 EYDVILFDVLGDVVCG-GFAAPLNYADYALIVTDNDF-DSIFAANRIAAAVREKAKTYKVRLAGLIANRTDKT-----DL  187 (267)
T ss_pred             cCCEEEEeCCCCcccc-cchhhhhhcCEEEEEecCCc-ccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCHH-----HH
Confidence            4677888997754322 12234778999999987764 3444444433333322  2355543 788999831     12


Q ss_pred             HHHHHHHcCCcEE
Q 029854          103 QVTFHRKKNLQYY  115 (186)
Q Consensus       103 ~~~~~~~~~~~~~  115 (186)
                      ...+...++.+++
T Consensus       188 i~~~~~~~~~~vl  200 (267)
T cd02032         188 IDKFVEAVGMPVL  200 (267)
T ss_pred             HHHHHHhCCCCEE
Confidence            2334445555544

Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=81.20  E-value=4.8  Score=34.01  Aligned_cols=86  Identities=12%  Similarity=0.008  Sum_probs=46.3

Q ss_pred             EEEEEEEeCCCccccCC-----cccc-ccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCccc
Q 029854           26 KIRFYCWDTAGQEKFGG-----LRDG-YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV   99 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~-----~~~~-~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~   99 (186)
                      .+.+.|+||+|.-....     +... .....+-++||+|++-.....   ...+.+.+.  -.+--+|.||.|...+. 
T Consensus       182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~---~~a~~F~~~--~~~~g~IlTKlD~~arg-  255 (429)
T TIGR01425       182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAE---AQAKAFKDS--VDVGSVIITKLDGHAKG-  255 (429)
T ss_pred             CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHH---HHHHHHHhc--cCCcEEEEECccCCCCc-
Confidence            46778899999643321     1111 122468899999997543222   122233221  23566889999964321 


Q ss_pred             ChHHHHHHHHcCCcEEEec
Q 029854          100 KAKQVTFHRKKNLQYYEIS  118 (186)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~S  118 (186)
                       -.........+.|+.+++
T Consensus       256 -G~aLs~~~~t~~PI~fig  273 (429)
T TIGR01425       256 -GGALSAVAATKSPIIFIG  273 (429)
T ss_pred             -cHHhhhHHHHCCCeEEEc
Confidence             112344445566555444

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>cd03112 CobW_like The function of this protein family is unkown

Probab=81.19  E-value=2.3  Score=30.56  Aligned_cols=64  Identities=13%  Similarity=-0.001  Sum_probs=36.3

Q ss_pred             EEEEEEEeCCCccccCCcc--------ccccccCcEEEEEEeCCChhhHH-hHHHHHHHHHhhcCCCCEEEEEeCCCC
Q 029854           26 KIRFYCWDTAGQEKFGGLR--------DGYYIHGQCAIIMFDVTARLTYK-NVPTWHRDLCRVCENIPIVLCGNKVDV   94 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~~~--------~~~~~~ad~vilv~D~~~~~s~~-~i~~~~~~~~~~~~~~p~ilv~nK~Dl   94 (186)
                      .....+.||+|...-..+.        ....-..+++++++|+....... ....+..++..    .. +||.||+|+
T Consensus        86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~----ad-~ivlnk~dl  158 (158)
T cd03112          86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF----AD-RILLNKTDL  158 (158)
T ss_pred             CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH----CC-EEEEecccC
Confidence            4566788999964322211        11233589999999987543321 11223333333    23 457899996

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily

Probab=81.05  E-value=4.4  Score=29.15  Aligned_cols=65  Identities=17%  Similarity=0.144  Sum_probs=43.5

Q ss_pred             eEEEEEEEeCCCccccCCcccccc--ccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCE-EEEEeCCCC
Q 029854           25 GKIRFYCWDTAGQEKFGGLRDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDV   94 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~~~~~~~~--~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~-ilv~nK~Dl   94 (186)
                      ..+.+.+.|||+.-.  ......+  ..+|.+|++..++. .+......+++.+.+.  +.++ -+|.|+.+-
T Consensus        66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~-~s~~~~~~~~~~l~~~--~~~~~gvv~N~~~~  133 (169)
T cd02037          66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQE-VALDDVRKAIDMFKKV--NIPILGVVENMSYF  133 (169)
T ss_pred             CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCch-hhHHHHHHHHHHHHhc--CCCeEEEEEcCCcc
Confidence            356778889987532  2122222  57899999997774 5667777777777765  4444 478999874

Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.

>PRK10867 signal recognition particle protein; Provisional

Probab=80.99  E-value=7.6  Score=32.89  Aligned_cols=87  Identities=13%  Similarity=0.066  Sum_probs=47.6

Q ss_pred             EEEEEEEeCCCccccCC-ccc---cc--cccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCccc
Q 029854           26 KIRFYCWDTAGQEKFGG-LRD---GY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV   99 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~-~~~---~~--~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~   99 (186)
                      .+.+.|+||+|.-.... +..   .+  .-..+.+++|+|++...   +.......+.+..  ...-+|.||.|...+. 
T Consensus       183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~--~i~giIlTKlD~~~rg-  256 (433)
T PRK10867        183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL--GLTGVILTKLDGDARG-  256 (433)
T ss_pred             CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC--CCCEEEEeCccCcccc-
Confidence            36678889999643221 111   00  12467789999987532   2223333333321  1234667999953222 


Q ss_pred             ChHHHHHHHHcCCcEEEecc
Q 029854          100 KAKQVTFHRKKNLQYYEISA  119 (186)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~Sa  119 (186)
                       -.........++|+.+++.
T Consensus       257 -G~alsi~~~~~~PI~fig~  275 (433)
T PRK10867        257 -GAALSIRAVTGKPIKFIGT  275 (433)
T ss_pred             -cHHHHHHHHHCcCEEEEeC
Confidence             2245566677788766655

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=80.93  E-value=7.6  Score=29.94  Aligned_cols=101  Identities=15%  Similarity=0.142  Sum_probs=64.0

Q ss_pred             EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhH--HHHHHHHHhh-cCCCCEEEEEeCCCCCCcccChH
Q 029854           26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV--PTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKAK  102 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i--~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~  102 (186)
                      .+.+.|.||.|...  .+....+..||.+|+=+-.+..+.-+.+  ..|+.++.+. ....|.-|+.|++.-........
T Consensus        83 ~~d~VlvDleG~as--~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~~~~~~~  160 (231)
T PF07015_consen   83 GFDFVLVDLEGGAS--ELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAARLTRAQR  160 (231)
T ss_pred             CCCEEEEeCCCCCc--hhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcchhhHHHH
Confidence            36778889987533  3355567789999998888865543332  3556555543 36799999999986321111111


Q ss_pred             H-HHHHHHcCCcEEEeccCCCCCchHHHH
Q 029854          103 Q-VTFHRKKNLQYYEISAKSNYNFEKPFL  130 (186)
Q Consensus       103 ~-~~~~~~~~~~~~~~Sa~~~~gi~~l~~  130 (186)
                      . ..+..  ++|++.+.-.......++|.
T Consensus       161 ~~~e~~~--~lpvl~t~l~eR~Af~~m~~  187 (231)
T PF07015_consen  161 IISEQLE--SLPVLDTELHERDAFRAMFS  187 (231)
T ss_pred             HHHHHHh--cCCccccccccHHHHHHHHH
Confidence            1 22222  58888888877766666666

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>TIGR01968 minD_bact septum site-determining protein MinD

Probab=80.74  E-value=4.4  Score=31.10  Aligned_cols=65  Identities=11%  Similarity=-0.055  Sum_probs=44.0

Q ss_pred             EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCC
Q 029854           26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV   94 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl   94 (186)
                      .+.+.|+|+|+...  ......+..||.+|+++..+- .++..+...++.+.+.. ..++.++.|+++-
T Consensus       111 ~~D~viiD~p~~~~--~~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~-~~~~~iviN~~~~  175 (261)
T TIGR01968       111 EFDYVIIDCPAGIE--SGFRNAVAPADEAIVVTTPEV-SAVRDADRVIGLLEAKG-IEKIHLIVNRLRP  175 (261)
T ss_pred             hCCEEEEeCCCCcC--HHHHHHHHhCCeEEEEcCCCc-HHHHHHHHHHHHHHHcC-CCceEEEEeCcCc
Confidence            46778899987543  223445678999999998864 46666666665555432 3467788899874

This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.

>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring

Probab=80.62  E-value=23  Score=28.88  Aligned_cols=107  Identities=16%  Similarity=0.114  Sum_probs=53.8

Q ss_pred             EEEEEEeCCCccccCCcccccc-ccCcEEEEEEeCCChhhHH---hHHHHHHHHHhhcCCCC-EEEEEeCCCCCCcccCh
Q 029854           27 IRFYCWDTAGQEKFGGLRDGYY-IHGQCAIIMFDVTARLTYK---NVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKA  101 (186)
Q Consensus        27 ~~l~l~Dt~G~~~~~~~~~~~~-~~ad~vilv~D~~~~~s~~---~i~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~  101 (186)
                      +.+.|+|+.|......+..... .-++.+|+| -..+..+..   .+.+.++.+.+...+.+ +-+|.||.|...     
T Consensus       148 ~DyVliD~~gdv~~ggf~l~i~~~~ad~VIVV-t~pe~~si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d~~~-----  221 (329)
T cd02033         148 FDYVLLDFLGDVVCGGFGLPIARDMAQKVIVV-GSNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDGTG-----  221 (329)
T ss_pred             CCEEEEecCCcceeccccchhhhcCCceEEEe-CCchHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcCCcc-----
Confidence            4566777766332111111111 124444444 444455553   34555555555432333 568999998532     


Q ss_pred             HHHHHHHHcCCcEEEec----------------cCCCCCchHHHHHHHHHHhCC
Q 029854          102 KQVTFHRKKNLQYYEIS----------------AKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus       102 ~~~~~~~~~~~~~~~~S----------------a~~~~gi~~l~~~l~~~i~~~  139 (186)
                      ....+++.++++++..=                ...+..+.+.|..+++.+.+.
T Consensus       222 ~ie~~ae~lgi~vLg~IP~D~~V~~a~~~g~~~~~p~s~~a~~f~~LA~~I~~~  275 (329)
T cd02033         222 EAQAFAAHAGIPILAAIPADEELRRKSAAYQIVGRPGTTWGPLFEQLATNVAEA  275 (329)
T ss_pred             hHHHHHHHhCCCEEEECCCCHHHHHHHHcCCeecCCCCHHHHHHHHHHHHHHHh
Confidence            23456666665543210                111234667788888877664

This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.

>CHL00175 minD septum-site determining protein; Validated

Probab=80.06  E-value=4.5  Score=31.74  Aligned_cols=65  Identities=12%  Similarity=-0.088  Sum_probs=42.6

Q ss_pred             EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCC
Q 029854           26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV   94 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl   94 (186)
                      .+.+.|+|||+.-  .......+..||.+++|++.+- .+...+...++.+.+.. ...+.+|.|+++-
T Consensus       126 ~yD~VIiDtpp~~--~~~~~~~l~~aD~viiV~~p~~-~si~~~~~~~~~l~~~~-~~~~~lvvN~~~~  190 (281)
T CHL00175        126 GYDYILIDCPAGI--DVGFINAIAPAQEAIVVTTPEI-TAIRDADRVAGLLEANG-IYNVKLLVNRVRP  190 (281)
T ss_pred             CCCEEEEeCCCCC--CHHHHHHHHhcCeeEEEcCCCh-HHHHHHHHHHHHHHHcC-CCceEEEEeccCh
Confidence            5778899998753  2333445677999999988764 45555555555555432 2345678899874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	186
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		6e-76
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		1e-73
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		1e-73
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		2e-73
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		3e-73
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		5e-73
1byu_A	216	Canine Gdp-Ran Length = 216		5e-73
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		9e-73
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		9e-73
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		2e-72
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		2e-71
3icq_B	171	Karyopherin Nuclear State Length = 171		1e-65
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		1e-65
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		5e-65
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		8e-65
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		1e-64
2bku_A	177	Kap95p:rangtp Complex Length = 177		2e-64
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		1e-32
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		1e-19
1vg1_A	185	Gdp-bound Rab7 Length = 185		1e-19
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		2e-19
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		8e-19
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		3e-17
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		2e-16
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		7e-16
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		1e-15
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		2e-15
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		2e-15
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		2e-15
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		2e-15
2efc_B	181	Ara7-GdpATVPS9A Length = 181		5e-15
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		6e-15
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		6e-15
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		7e-15
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		9e-15
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		1e-14
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		1e-14
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		1e-14
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		1e-14
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		1e-14
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		1e-14
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		2e-14
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		2e-14
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		2e-14
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		2e-14
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		2e-14
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		3e-14
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		3e-14
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		4e-14
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		4e-14
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		4e-14
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		4e-14
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		5e-14
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		5e-14
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		6e-14
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		9e-14
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		1e-13
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		1e-13
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		1e-13
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		1e-13
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		1e-13
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		1e-13
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		1e-13
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		1e-13
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		1e-13
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		2e-13
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		2e-13
4fmc_B	171	Espg-Rab1 Complex Length = 171		2e-13
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		2e-13
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		2e-13
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		3e-13
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		4e-13
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		4e-13
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		4e-13
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		5e-13
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		5e-13
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		6e-13
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		8e-13
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		8e-13
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		9e-13
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		1e-12
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		1e-12
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		1e-12
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		1e-12
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		1e-12
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		1e-12
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		2e-12
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		2e-12
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		2e-12
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		2e-12
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		2e-12
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		2e-12
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		2e-12
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		3e-12
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		4e-12
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		4e-12
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		4e-12
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		4e-12
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		5e-12
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		5e-12
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		7e-12
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		7e-12
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		7e-12
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		8e-12
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		1e-11
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		2e-11
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		2e-11
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		3e-11
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		3e-11
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		3e-11
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		3e-11
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		3e-11
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		3e-11
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		4e-11
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		4e-11
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		4e-11
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		4e-11
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		6e-11
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		6e-11
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		6e-11
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		6e-11
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		6e-11
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		6e-11
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		6e-11
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		6e-11
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		7e-11
4q21_A	189	Molecular Switch For Signal Transduction: Structura		7e-11
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		7e-11
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		7e-11
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		7e-11
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		8e-11
1wq1_R	166	Ras-Rasgap Complex Length = 166		8e-11
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		8e-11
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		8e-11
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		8e-11
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		9e-11
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		9e-11
6q21_A	171	Molecular Switch For Signal Transduction: Structura		9e-11
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		9e-11
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		1e-10
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		1e-10
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		1e-10
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-10
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		2e-10
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		2e-10
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-10
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-10
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		2e-10
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		2e-10
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		2e-10
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		3e-10
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-10
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		3e-10
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		3e-10
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		3e-10
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		3e-10
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		3e-10
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-10
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		4e-10
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		4e-10
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		5e-10
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		5e-10
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		5e-10
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		5e-10
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		6e-10
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		6e-10
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		6e-10
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		7e-10
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		7e-10
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		7e-10
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		7e-10
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		7e-10
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		1e-09
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		1e-09
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		1e-09
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		1e-09
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		2e-09
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		2e-09
4fmc_F	117	Espg-Rab1 Complex Length = 117		3e-09
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		5e-09
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		2e-08
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		3e-08
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		5e-08
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		5e-08
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		5e-08
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		5e-08
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		5e-08
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		5e-08
1s1c_A	183	Crystal Structure Of The Complex Between The Human		6e-08
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		6e-08
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		8e-08
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		8e-08
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		9e-08
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		9e-08
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		1e-07
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		1e-07
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		1e-07
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		3e-07
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		3e-07
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		3e-07
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		3e-07
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		4e-07
1mh1_A	186	Small G-Protein Length = 186		7e-07
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		7e-07
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		8e-07
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		8e-07
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		2e-06
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		2e-06
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		2e-06
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		2e-06
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		2e-06
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		2e-06
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		2e-06
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		2e-06
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		2e-06
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		2e-06
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		3e-06
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		3e-06
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		3e-06
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		3e-06
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		3e-06
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		3e-06
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		6e-06
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		7e-06
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		1e-05
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		1e-05
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		1e-05
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		1e-05
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		1e-05
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		1e-05
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		1e-05
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		2e-05
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		2e-05
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		3e-05
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		6e-05
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		7e-05
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		8e-05
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		8e-05
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		9e-05
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		2e-04
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		2e-04
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		3e-04
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		3e-04
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		3e-04
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		4e-04
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		4e-04
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		5e-04
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		5e-04
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		5e-04
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		5e-04
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		5e-04
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		5e-04
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		5e-04
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		5e-04
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		5e-04
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		5e-04
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		5e-04
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		6e-04
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		6e-04
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		6e-04
2kb0_A	178	Cdc42(T35a) Length = 178		6e-04
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		6e-04
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		6e-04
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		7e-04
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		7e-04
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		9e-04

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score =  279 bits (714), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 131/174 (75%), Positives = 145/174 (83%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           ATIGVEVHPL F+TN G+I+F  WDTAG EKFGGLRDGYYI+ QCAIIMFDVT+R+TYKN
Sbjct: 43  ATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKN 102
Query: 69  VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128
           VP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKP
Sbjct: 103 VPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKP 162
Query: 129 FLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDD 182
           FL+LARKLAG+P L FV SPALAPPEVQ+D               + PLPD+DD
Sbjct: 163 FLWLARKLAGNPQLEFVASPALAPPEVQVDEQLMQQYQQEMEQATALPLPDEDD 216

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score =  272 bits (695), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 128/175 (73%), Positives = 141/175 (80%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           AT+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKN
Sbjct: 46  ATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKN 105
Query: 69  VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128
           VP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKP
Sbjct: 106 VPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKP 165
Query: 129 FLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 183
           FL+LARKL GDPNL FV  PALAPPEV +D               +  LPD+DDD
Sbjct: 166 FLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 220

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score =  271 bits (694), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 128/175 (73%), Positives = 141/175 (80%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           AT+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKN
Sbjct: 41  ATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKN 100
Query: 69  VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128
           VP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKP
Sbjct: 101 VPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKP 160
Query: 129 FLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 183
           FL+LARKL GDPNL FV  PALAPPEV +D               +  LPD+DDD
Sbjct: 161 FLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score =  271 bits (693), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 128/175 (73%), Positives = 141/175 (80%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           AT+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKN
Sbjct: 46  ATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKN 105
Query: 69  VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128
           VP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKP
Sbjct: 106 VPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKP 165
Query: 129 FLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 183
           FL+LARKL GDPNL FV  PALAPPEV +D               +  LPD+DDD
Sbjct: 166 FLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 220

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score =  270 bits (691), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 127/175 (72%), Positives = 141/175 (80%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           AT+GVEVHPL F TN G I+F  WDTAGQEK+GGLRDGYYI  QCAIIMFDVT+R+TYKN
Sbjct: 41  ATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKN 100
Query: 69  VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128
           VP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKP
Sbjct: 101 VPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKP 160
Query: 129 FLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 183
           FL+LARKL GDPNL FV  PALAPPEV +D               +  LPD+DDD
Sbjct: 161 FLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score =  270 bits (689), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 127/175 (72%), Positives = 140/175 (80%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           AT+GVEVHPL F TN G I+F  WDTAGQEKFGGL DGYYI  QCAIIMFDVT+R+TYKN
Sbjct: 41  ATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKN 100
Query: 69  VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128
           VP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKP
Sbjct: 101 VPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKP 160
Query: 129 FLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 183
           FL+LARKL GDPNL FV  PALAPPEV +D               +  LPD+DDD
Sbjct: 161 FLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score =  270 bits (689), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 127/174 (72%), Positives = 140/174 (80%)
Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           T+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNV
Sbjct: 42  TLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV 101
Query: 70  PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 129
           P WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPF
Sbjct: 102 PNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161
Query: 130 LYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 183
           L+LARKL GDPNL FV  PALAPPEV +D               +  LPD+DDD
Sbjct: 162 LWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score =  268 bits (686), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 127/175 (72%), Positives = 140/175 (80%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           AT+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKN
Sbjct: 41  ATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKN 100
Query: 69  VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128
           VP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKP
Sbjct: 101 VPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKP 160
Query: 129 FLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 183
           FL+LARKL GDPNL FV  P LAPPEV +D               +  LPD+DDD
Sbjct: 161 FLWLARKLIGDPNLEFVAMPCLAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score =  268 bits (686), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 127/175 (72%), Positives = 140/175 (80%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           AT+GVEVHPL F TN G I+F  WDTAG EKFGGLRDGYYI  QCAIIMFDVT+R+TYKN
Sbjct: 41  ATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKN 100
Query: 69  VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128
           VP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKP
Sbjct: 101 VPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKP 160
Query: 129 FLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 183
           FL+LARKL GDPNL FV  PALAPPEV +D               +  LPD+DDD
Sbjct: 161 FLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score =  268 bits (684), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 127/175 (72%), Positives = 139/175 (79%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           AT+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAII FDVT+R+TYKN
Sbjct: 41  ATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKN 100
Query: 69  VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128
           VP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKP
Sbjct: 101 VPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKP 160
Query: 129 FLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 183
           FL+LARKL GDPNL FV  PALAPPEV  D               +  LPD+DDD
Sbjct: 161 FLWLARKLIGDPNLEFVAXPALAPPEVVXDPALAAQYEHDLEVAQTTALPDEDDD 215

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score =  264 bits (675), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 125/171 (73%), Positives = 137/171 (80%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           AT+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKN
Sbjct: 34  ATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKN 93
Query: 69  VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128
           VP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKP
Sbjct: 94  VPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKP 153
Query: 129 FLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPD 179
           FL+LARKL GDPNL FV  PALAPPEV +D               +  LPD
Sbjct: 154 FLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPD 204

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score =  245 bits (626), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 114/137 (83%), Positives = 125/137 (91%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           ATIGVEVHPL F+TN G+I+F  WDTAG EKFGGLRDGYYI+ QCAIIMFDVT+R+TYKN
Sbjct: 35  ATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKN 94
Query: 69  VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128
           VP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKP
Sbjct: 95  VPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKP 154
Query: 129 FLYLARKLAGDPNLHFV 145
           FL+LARKLAG+P L FV
Sbjct: 155 FLWLARKLAGNPQLEFV 171

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score =  245 bits (625), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 114/137 (83%), Positives = 125/137 (91%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           ATIGVEVHPL F+TN G+I+F  WDTAG EKFGGLRDGYYI+ QCAIIMFDVT+R+TYKN
Sbjct: 36  ATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKN 95
Query: 69  VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128
           VP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKP
Sbjct: 96  VPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKP 155
Query: 129 FLYLARKLAGDPNLHFV 145
           FL+LARKLAG+P L FV
Sbjct: 156 FLWLARKLAGNPQLEFV 172

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score =  243 bits (620), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 113/140 (80%), Positives = 123/140 (87%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           AT+GVEVHPL F TN G I+F  WDTAG EKFGGLRDGYYI  QCAIIMFDVT+R+TYKN
Sbjct: 43  ATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKN 102
Query: 69  VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128
           VP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKP
Sbjct: 103 VPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKP 162
Query: 129 FLYLARKLAGDPNLHFVESP 148
           FL+LARKL GDPNL FV  P
Sbjct: 163 FLWLARKLIGDPNLEFVAMP 182

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score =  242 bits (618), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 113/140 (80%), Positives = 123/140 (87%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           AT+GVEVHPL F TN G I+F  WDTAG EKFGGLRDGYYI  QCAIIMFDVT+R+TYKN
Sbjct: 37  ATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKN 96
Query: 69  VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128
           VP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKP
Sbjct: 97  VPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKP 156
Query: 129 FLYLARKLAGDPNLHFVESP 148
           FL+LARKL GDPNL FV  P
Sbjct: 157 FLWLARKLIGDPNLEFVAMP 176

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score =  242 bits (617), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 112/136 (82%), Positives = 122/136 (89%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           AT+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKN
Sbjct: 41  ATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKN 100
Query: 69  VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128
           VP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKP
Sbjct: 101 VPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKP 160
Query: 129 FLYLARKLAGDPNLHF 144
           FL+LARKL GDPNL F
Sbjct: 161 FLWLARKLIGDPNLEF 176

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score =  241 bits (615), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 112/136 (82%), Positives = 122/136 (89%)
Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           T+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNV
Sbjct: 42  TLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV 101
Query: 70  PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 129
           P WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPF
Sbjct: 102 PNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161
Query: 130 LYLARKLAGDPNLHFV 145
           L+LARKL GDPNL FV
Sbjct: 162 LWLARKLIGDPNLEFV 177

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score =  135 bits (341), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 72/154 (46%), Positives = 98/154 (63%), Gaps = 4/154 (2%)
Query: 9   ATIGVEVHPLDFFTNCGK-IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
           AT+G   HP+ F  + G  I+F  WDTAGQEK   L+D YYI    AI+ FDVT+R+T +
Sbjct: 42  ATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQ 101
Query: 68  NVPTWHRDLCRVCEN-IPIVLCGNKVDVKNRQVKAKQVTFH--RKKNLQYYEISAKSNYN 124
           N+  W ++   V  N  PIV+C NK+D+KNRQ  +K++     + KN +Y+EISAK+ +N
Sbjct: 102 NLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHN 161
Query: 125 FEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 158
           F  PFL+LAR   G P+L FV +  L P EV  D
Sbjct: 162 FGLPFLHLARIFTGRPDLIFVSNVNLEPTEVNYD 195

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 73/134 (54%), Gaps = 7/134 (5%)
Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
           KATIG +    +   +   +    WDTAGQE+F  L   +Y    C +++FDVTA  T+K
Sbjct: 38  KATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFK 97
Query: 68  NVPTWHRDLC-----RVCENIPIVLCGNKVDVKNRQVKAK--QVTFHRKKNLQYYEISAK 120
            + +W  +       R  EN P V+ GNK+D++NRQV  K  Q   + K N+ Y+E SAK
Sbjct: 98  TLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAK 157
Query: 121 SNYNFEKPFLYLAR 134
              N E+ F  +AR
Sbjct: 158 EAINVEQAFQTIAR 171

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 73/134 (54%), Gaps = 7/134 (5%)
Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
           KATIG +    +   +   +    WDTAGQE+F  L   +Y    C +++FDVTA  T+K
Sbjct: 38  KATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFK 97
Query: 68  NVPTWHRDLC-----RVCENIPIVLCGNKVDVKNRQVKAK--QVTFHRKKNLQYYEISAK 120
            + +W  +       R  EN P V+ GNK+D++NRQV  K  Q   + K N+ Y+E SAK
Sbjct: 98  TLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAK 157
Query: 121 SNYNFEKPFLYLAR 134
              N E+ F  +AR
Sbjct: 158 EAINVEQAFQTIAR 171

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 72/134 (53%), Gaps = 7/134 (5%)
Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
           KATIG +    +   +   +    WDTAGQE+F  L   +Y    C +++FDVTA  T+K
Sbjct: 38  KATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFK 97
Query: 68  NVPTWHRDLC-----RVCENIPIVLCGNKVDVKNRQVKAK--QVTFHRKKNLQYYEISAK 120
            + +W  +       R  EN P V+ GNK+D +NRQV  K  Q   + K N+ Y+E SAK
Sbjct: 98  TLDSWRDEFLIQASPRDPENFPFVVLGNKIDFENRQVATKRAQAWCYSKNNIPYFETSAK 157
Query: 121 SNYNFEKPFLYLAR 134
              N E+ F  +AR
Sbjct: 158 EAINVEQAFQTIAR 171

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score = 89.7 bits (221), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 50/134 (37%), Positives = 72/134 (53%), Gaps = 7/134 (5%)
Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
           KATIG +    +   +   +    WDTAG E+F  L   +Y    C +++FDVTA  T+K
Sbjct: 38  KATIGADFLTKEVMVDDRLVTMQIWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFK 97
Query: 68  NVPTWHRDLC-----RVCENIPIVLCGNKVDVKNRQVKAK--QVTFHRKKNLQYYEISAK 120
            + +W  +       R  EN P V+ GNK+D++NRQV  K  Q   + K N+ Y+E SAK
Sbjct: 98  TLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAK 157
Query: 121 SNYNFEKPFLYLAR 134
              N E+ F  +AR
Sbjct: 158 EAINVEQAFQTIAR 171

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 73/135 (54%), Gaps = 3/135 (2%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           ATIGV+        N  K++   WDTAGQE+F  +   YY      I+ +D+T   +++ 
Sbjct: 57  ATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRC 116
Query: 69  VPTWHRDLCRVCEN-IPIVLCGNKVDVKNRQVKAKQVT--FHRKKNLQYYEISAKSNYNF 125
           +P W R++ +   N +  VL GNK+D+  R+  ++Q    F   +++ Y E SAK + N 
Sbjct: 117 LPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNV 176
Query: 126 EKPFLYLARKLAGDP 140
           EK FL LA +L  + 
Sbjct: 177 EKLFLDLACRLISEA 191

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 79/149 (53%), Gaps = 8/149 (5%)
Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIGVE            ++   WDTAGQE+F  +   YY     A++++D+T+R TY  +
Sbjct: 42  TIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNAL 101
Query: 70  PTWHRDLCRVC-ENIPIVLCGNKVDV-KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFE 126
             W  D   +  +NI I+LCGNK D+  +R+V   + + F ++  L + E SA +  N E
Sbjct: 102 TNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVE 161
Query: 127 KPFLYLARKLAGDPNLHFVESPALAPPEV 155
           + F+  ARK+     L+ +ES  L P  +
Sbjct: 162 EAFVQCARKI-----LNKIESGELDPERM 185

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 80.1 bits (196), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 73/148 (49%), Gaps = 3/148 (2%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           ATIGV+        +  K +   WDTAGQE+F  L   YY   Q  I+++DVT R T+  
Sbjct: 46  ATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVK 105
Query: 69  VPTWHRDLCRVCENIPIV--LCGNKVDVKNRQV-KAKQVTFHRKKNLQYYEISAKSNYNF 125
           +  W  +L   C    IV  L GNK+D +NR+V + + + F RK +  + E SAK+    
Sbjct: 106 LDNWLNELETYCTRNDIVNXLVGNKIDKENREVDRNEGLKFARKHSXLFIEASAKTCDGV 165
Query: 126 EKPFLYLARKLAGDPNLHFVESPALAPP 153
           +  F  L  K+   P L   E+    P 
Sbjct: 166 QCAFEELVEKIIQTPGLWESENQNSGPS 193

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 77/149 (51%), Gaps = 8/149 (5%)
Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIGVE            ++   WDTAGQE+F  +   YY     A++++D+T+R TY ++
Sbjct: 57  TIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSL 116
Query: 70  PTWHRDLCRVCE-NIPIVLCGNKVDVK-NRQVKAKQVT-FHRKKNLQYYEISAKSNYNFE 126
             W  D   +   NI ++LCGNK D+   R+V   + + F ++  L + E SA +  N E
Sbjct: 117 AAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVE 176
Query: 127 KPFLYLARKLAGDPNLHFVESPALAPPEV 155
           + FL  AR +     L+ ++S  L P  +
Sbjct: 177 EAFLKCARTI-----LNKIDSGELDPERM 200

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 67/126 (53%), Gaps = 3/126 (2%)
Query: 7   GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTY 66
            K+TIGVE        +   I+   WDTAGQE++  +   YY     A++++D+   LTY
Sbjct: 34  SKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTY 93
Query: 67  KNVPTWHRDLC-RVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNY 123
           +NV  W ++L      NI I+L GNK D+++ R V   +   F  K NL + E SA  + 
Sbjct: 94  ENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDST 153
Query: 124 NFEKPF 129
           N E+ F
Sbjct: 154 NVEEAF 159

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 72/130 (55%), Gaps = 3/130 (2%)
Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIGVE        +  +I+   WDTAGQE F  +   YY     A++++D+T R T+ ++
Sbjct: 42  TIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHL 101
Query: 70  PTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFE 126
            TW  D  +    N+ I+L GNK D+++R+   K+    F R+  L + E SAK+  N E
Sbjct: 102 TTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVE 161
Query: 127 KPFLYLARKL 136
           + F+  A+++
Sbjct: 162 EAFINTAKEI 171

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 72/134 (53%), Gaps = 3/134 (2%)
Query: 6   WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT 65
           + ++TIG          +   ++F  WDTAGQE++  L   YY   Q AI+++D+T + T
Sbjct: 36  YQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQET 95
Query: 66  YKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKSN 122
           +    TW ++L R    +I I L GNK D+ N R V+ ++   +   N L + E SAK+ 
Sbjct: 96  FARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTA 155
Query: 123 YNFEKPFLYLARKL 136
            N    FL +A+KL
Sbjct: 156 MNVNDLFLAIAKKL 169

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 71/132 (53%), Gaps = 7/132 (5%)
Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIGVE        +  KI+   WDTAGQE+F  +   YY     A++++D+T R TY ++
Sbjct: 47  TIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHL 106
Query: 70  PTWHRDLCRVCE-NIPIVLCGNKVDVK-NRQV---KAKQVTFHRKKNLQYYEISAKSNYN 124
            +W  D   +   N  I+L GNK D++  R V   +AKQ  F  +  L + E SAK+  N
Sbjct: 107 SSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQ--FAEENGLLFLEASAKTGEN 164
Query: 125 FEKPFLYLARKL 136
            E  FL  A+K+
Sbjct: 165 VEDAFLEAAKKI 176

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score = 77.0 bits (188), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 73/132 (55%), Gaps = 3/132 (2%)
Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
           ++TIG          N   ++F  WDTAGQE++  L   YY     AII+FDVT + +++
Sbjct: 42  ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFE 101
Query: 68  NVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYN 124
               W ++L  +   N+ + L GNK D+ + R+V A+   T+ ++  L + E SAK+  N
Sbjct: 102 RAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATN 161
Query: 125 FEKPFLYLARKL 136
            ++ F  +AR+L
Sbjct: 162 VKEIFYEIARRL 173

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 71/130 (54%), Gaps = 3/130 (2%)
Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIGVE            ++   WDTAGQE+F  +   YY     A++++D+T+R TY  +
Sbjct: 43  TIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNAL 102
Query: 70  PTWHRDLCRVC-ENIPIVLCGNKVDV-KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFE 126
             W  D   +  +NI I+LCGNK D+  +R+V   + + F ++  L + E SA +  + E
Sbjct: 103 TNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVE 162
Query: 127 KPFLYLARKL 136
           + F+  ARK+
Sbjct: 163 EAFVQCARKI 172

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 76.6 bits (187), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 10/134 (7%)
Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
           K TIGV+        N   +R   WDTAGQE+F  +   YY   Q  +++F  T R +++
Sbjct: 35  KKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFE 94
Query: 68  NVPTWHRDLCRVCENIPIVLCGNKVD------VKNRQVKAKQVTFHRKKNLQYYEISAKS 121
            + +W   +     +IP  L  NK+D      +KN + +       ++  L++Y  S K 
Sbjct: 95  AISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEG----LAKRLKLRFYRTSVKE 150
Query: 122 NYNFEKPFLYLARK 135
           + N  + F YLA K
Sbjct: 151 DLNVSEVFKYLAEK 164

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 76.6 bits (187), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 65/125 (52%), Gaps = 3/125 (2%)
Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
           K+TIGVE        +   I+   WDTAGQE++  +   YY     A++++D+   LTY+
Sbjct: 59  KSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYE 118
Query: 68  NVPTWHRDLC-RVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYN 124
           NV  W ++L      NI I+L GNK D+++ R V   +   F  K  L + E SA  + N
Sbjct: 119 NVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTN 178
Query: 125 FEKPF 129
            E  F
Sbjct: 179 VEAAF 183

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 76.3 bits (186), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 65/125 (52%), Gaps = 3/125 (2%)
Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
           K+TIGVE        +   I+   WDTAGQE++  +   YY     A++++D+   LTY+
Sbjct: 50  KSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYE 109
Query: 68  NVPTWHRDLC-RVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYN 124
           NV  W ++L      NI I+L GNK D+++ R V   +   F  K  L + E SA  + N
Sbjct: 110 NVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTN 169
Query: 125 FEKPF 129
            E  F
Sbjct: 170 VEAAF 174

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 70/132 (53%), Gaps = 3/132 (2%)
Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
           ++TIG          +   ++F  WDTAGQE++  L   YY   Q AI+++D+T   ++ 
Sbjct: 37  ESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFA 96
Query: 68  NVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKSNYN 124
               W ++L R    NI I L GNK D+ N R V  ++   +   N L + E SAK++ N
Sbjct: 97  RAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN 156
Query: 125 FEKPFLYLARKL 136
             + F+ +A+KL
Sbjct: 157 VNEIFMAIAKKL 168

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 74/130 (56%), Gaps = 3/130 (2%)
Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIGVE        +  +I+   WDTAGQE F  +   YY     A++++D+T R T+ ++
Sbjct: 53  TIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL 112
Query: 70  PTWHRDLCR-VCENIPIVLCGNKVDVKNRQ-VKAKQ-VTFHRKKNLQYYEISAKSNYNFE 126
            +W  D  +    N+ I+L GNK D+++R+ VK ++   F R+  L + E SAK+  N E
Sbjct: 113 TSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVE 172
Query: 127 KPFLYLARKL 136
           + F+  A+++
Sbjct: 173 EAFINTAKEI 182

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 70/132 (53%), Gaps = 7/132 (5%)
Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIGVE        +  KI+   WDTAGQ +F  +   YY     A++++D+T R TY ++
Sbjct: 62  TIGVEFGTRIIEVSGQKIKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHL 121
Query: 70  PTWHRDLCRVCE-NIPIVLCGNKVDVK-NRQV---KAKQVTFHRKKNLQYYEISAKSNYN 124
            +W  D   +   N  I+L GNK D++  R V   +AKQ  F  +  L + E SAK+  N
Sbjct: 122 SSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQ--FAEENGLLFLEASAKTGEN 179
Query: 125 FEKPFLYLARKL 136
            E  FL  A+K+
Sbjct: 180 VEDAFLEAAKKI 191

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 70/132 (53%), Gaps = 3/132 (2%)
Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
           ++TIG          +   ++F  WDTAGQE++  L   YY   Q AI+++D+T   ++ 
Sbjct: 36  ESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFA 95
Query: 68  NVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKSNYN 124
               W ++L R    NI I L GNK D+ N R V  ++   +   N L + E SAK++ N
Sbjct: 96  RAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN 155
Query: 125 FEKPFLYLARKL 136
             + F+ +A+KL
Sbjct: 156 VNEIFMAIAKKL 167

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 70/132 (53%), Gaps = 3/132 (2%)
Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
           ++TIG          +   ++F  WDTAGQE++  L   YY   Q AI+++D+T   ++ 
Sbjct: 36  ESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFA 95
Query: 68  NVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKSNYN 124
               W ++L R    NI I L GNK D+ N R V  ++   +   N L + E SAK++ N
Sbjct: 96  RAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN 155
Query: 125 FEKPFLYLARKL 136
             + F+ +A+KL
Sbjct: 156 VNEIFMAIAKKL 167

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 70/132 (53%), Gaps = 3/132 (2%)
Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
           ++TIG          +   ++F  WDTAGQE++  L   YY   Q AI+++D+T   ++ 
Sbjct: 36  ESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFA 95
Query: 68  NVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKSNYN 124
               W ++L R    NI I L GNK D+ N R V  ++   +   N L + E SAK++ N
Sbjct: 96  RAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN 155
Query: 125 FEKPFLYLARKL 136
             + F+ +A+KL
Sbjct: 156 VNEIFMAIAKKL 167

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 75/135 (55%), Gaps = 14/135 (10%)
Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
           K+T+GV+           KIR   WDTAGQE+F  +   YY   +  I+++D+T + T+ 
Sbjct: 56  KSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFD 115
Query: 68  NVPTWHRDLCR-VCENIPIVLCGNKVDVK-NRQVK-------AKQVTFHRKKNLQYYEIS 118
           ++P W + + +   E+  ++L GNK+D + +R++        A+Q+T      +++ E S
Sbjct: 116 DLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQIT-----GMRFCEAS 170
Query: 119 AKSNYNFEKPFLYLA 133
           AK N+N ++ FL L 
Sbjct: 171 AKDNFNVDEIFLKLV 185

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 70/132 (53%), Gaps = 3/132 (2%)
Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
           ++TIG          +   ++F  WDTAGQE++  L   YY   Q AI+++D+T   ++ 
Sbjct: 36  ESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFA 95
Query: 68  NVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKSNYN 124
               W ++L R    NI I L GNK D+ N R V  ++   +   N L + E SAK++ N
Sbjct: 96  RAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN 155
Query: 125 FEKPFLYLARKL 136
             + F+ +A+KL
Sbjct: 156 VNEIFMAIAKKL 167

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 7/134 (5%)
Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIGVE    D   +   +    WDTAGQE+F  LR  +Y    C ++ F V    +++N+
Sbjct: 43  TIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL 102
Query: 70  PTWHRDL-----CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSN 122
             W ++       +  E+ P V+ GNK D+K RQV  ++     K N    Y+E SAK +
Sbjct: 103 SNWKKEFIYYADVKEPESFPFVILGNKTDIKERQVSTEEAQAWCKDNGDYPYFETSAKDS 162
Query: 123 YNFEKPFLYLARKL 136
            N    F    R++
Sbjct: 163 TNVAAAFEEAVRRI 176

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 70/132 (53%), Gaps = 3/132 (2%)
Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
           ++TIG          +   ++F  WDTAGQE++  L   YY   Q AI+++D+T   ++ 
Sbjct: 36  ESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFA 95
Query: 68  NVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKSNYN 124
               W ++L R    NI I L GNK D+ N R V  ++   +   N L + E SAK++ N
Sbjct: 96  RAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN 155
Query: 125 FEKPFLYLARKL 136
             + F+ +A+KL
Sbjct: 156 VNEIFMAIAKKL 167

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 70/132 (53%), Gaps = 3/132 (2%)
Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
           ++TIG          +   ++F  WDTAGQE++  L   YY   Q AI+++D+T   ++ 
Sbjct: 36  ESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFA 95
Query: 68  NVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKSNYN 124
               W ++L R    NI I L GNK D+ N R V  ++   +   N L + E SAK++ N
Sbjct: 96  RAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN 155
Query: 125 FEKPFLYLARKL 136
             + F+ +A+KL
Sbjct: 156 VNEIFMAIAKKL 167

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 2/123 (1%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
            TIGV+        N  K++   WDTAGQE+F  +   YY      I+++DVT+  ++ N
Sbjct: 40  TTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVN 99
Query: 69  VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFE 126
           V  W  ++ + C+++  +L GNK D   R+V   +    F  +  +Q +E SAK N N E
Sbjct: 100 VKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVE 159
Query: 127 KPF 129
           + F
Sbjct: 160 EMF 162

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 71/134 (52%), Gaps = 3/134 (2%)
Query: 6   WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT 65
           + ++TIG          +   ++F  WDTAGQE++  L   YY   Q AI+++D+T   T
Sbjct: 31  YQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDT 90
Query: 66  YKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKSN 122
           +     W ++L R    NI I L GNK D+ + R V+ ++   +   N L + E SAK+ 
Sbjct: 91  FARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTA 150
Query: 123 YNFEKPFLYLARKL 136
            N  + F+ +A+KL
Sbjct: 151 MNVNEIFMAIAKKL 164

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
Query: 27  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPI 85
           ++F  WDTAGQE++  L   YY   Q AI+++D+T   T+     W ++L R    NI I
Sbjct: 54  VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 113
Query: 86  VLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 136
            L GNK D+ + R V+ ++   +   N L + E SAK+  N  + F+ +A+KL
Sbjct: 114 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 71/133 (53%), Gaps = 7/133 (5%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           +TIGV+        +   I+   WDTAGQE+F  +   YY      I+++DVT + +Y N
Sbjct: 40  STIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYAN 99
Query: 69  VPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNY 123
           V  W +++ R   EN+  +L GNK D+  ++V     AK+  F     + + E SAK+  
Sbjct: 100 VKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKE--FADSLGIPFLETSAKNAT 157
Query: 124 NFEKPFLYLARKL 136
           N E+ F+ +A ++
Sbjct: 158 NVEQAFMTMAAEI 170

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 71/133 (53%), Gaps = 7/133 (5%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           +TIGV+        +   I+   WDTAGQE+F  +   YY      I+++DVT + +Y N
Sbjct: 40  STIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYAN 99
Query: 69  VPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNY 123
           V  W +++ R   EN+  +L GNK D+  ++V     AK+  F     + + E SAK+  
Sbjct: 100 VKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKE--FADSLGIPFLETSAKNAT 157
Query: 124 NFEKPFLYLARKL 136
           N E+ F+ +A ++
Sbjct: 158 NVEQAFMTMAAEI 170

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 73.9 bits (180), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 3/132 (2%)
Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
           ++TIG          +   ++F  WDTAGQE++  L   YY   Q AI+++D+T   ++ 
Sbjct: 37  ESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFA 96
Query: 68  NVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKSNYN 124
               W ++L R    NI I L GNK D+ N R V  ++   +   N L + E SAK++ N
Sbjct: 97  RAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFXETSAKTSXN 156
Query: 125 FEKPFLYLARKL 136
             + F  +A+KL
Sbjct: 157 VNEIFXAIAKKL 168

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 70/130 (53%), Gaps = 3/130 (2%)
Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIGVE            ++   WDTAG E+F  +   YY     A++++D+T+R TY  +
Sbjct: 40  TIGVEFGSKIINVGGKYVKLQIWDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNAL 99
Query: 70  PTWHRDLCRVC-ENIPIVLCGNKVDV-KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFE 126
             W  D   +  +NI I+LCGNK D+  +R+V   + + F ++  L + E SA +  + E
Sbjct: 100 TNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVE 159
Query: 127 KPFLYLARKL 136
           + F+  ARK+
Sbjct: 160 EAFVQCARKI 169

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
           K+TIGVE        +   I+   WDTAG E++  +   YY     A++++D+   LTY+
Sbjct: 59  KSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYE 118
Query: 68  NVPTWHRDLC-RVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYN 124
           NV  W ++L      NI I+L GNK D+++ R V   +   F  K  L + E SA  + N
Sbjct: 119 NVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTN 178
Query: 125 FEKPF 129
            E  F
Sbjct: 179 VEAAF 183

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score = 73.6 bits (179), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
           K+TIGVE        +   I+   WDTAG E++  +   YY     A++++D+   LTY+
Sbjct: 38  KSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYE 97
Query: 68  NVPTWHRDLC-RVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYN 124
           NV  W ++L      NI I+L GNK D+++ R V   +   F  K  L + E SA  + N
Sbjct: 98  NVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTN 157
Query: 125 FEKPF 129
            E  F
Sbjct: 158 VEAAF 162

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 73.2 bits (178), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 73/136 (53%), Gaps = 11/136 (8%)
Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
           ++TIG++      + + G +R   WDTAGQE+F  L   Y      AI+++D+T R +++
Sbjct: 31  QSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFE 90
Query: 68  NVPTWHRD-LCRVCENIPIVLCGNKVDVKNRQVKAKQVTFH------RKKNLQYYEISAK 120
           N   W +D L    +++ I L GNK D+ +     ++VT+       ++ N  ++E SAK
Sbjct: 91  NTTKWIQDILNERGKDVIIALVGNKTDLGD----LRKVTYEEGXQKAQEYNTXFHETSAK 146
Query: 121 SNYNFEKPFLYLARKL 136
           + +N +  F   A KL
Sbjct: 147 AGHNIKVLFKKTASKL 162

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 3/125 (2%)
Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
           K+TIGVE        +   I+   WDTAG E++  +   YY     A++++D+   LTY+
Sbjct: 41  KSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYE 100
Query: 68  NVPTWHRDLC-RVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYN 124
           NV  W ++L      NI I L GNK D+++ R V   +   F  K  L + E SA  + N
Sbjct: 101 NVERWLKELRDHADSNIVIXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTN 160
Query: 125 FEKPF 129
            E  F
Sbjct: 161 VEAAF 165

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 7/134 (5%)
Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIGVE    D   +   +    WDTAGQE+F  LR  +Y    C ++ F V    +++N+
Sbjct: 39  TIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL 98
Query: 70  PTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSN 122
             W ++          E+ P V+ GNK+D+  RQV  ++     + N    Y+E SAK  
Sbjct: 99  SNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDA 158
Query: 123 YNFEKPFLYLARKL 136
            N    F    R++
Sbjct: 159 TNVAAAFEEAVRRV 172

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 7/133 (5%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           +TIGV+        +   I+   WDTAGQE+F  +   YY      I+++DVT + ++ N
Sbjct: 47  STIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNN 106
Query: 69  VPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNY 123
           V  W +++ R   EN+  +L GNK D+  ++V     AK+  F     + + E SAK+  
Sbjct: 107 VKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKE--FADSLGIPFLETSAKNAT 164
Query: 124 NFEKPFLYLARKL 136
           N E+ F+ +A ++
Sbjct: 165 NVEQSFMTMAAEI 177

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 3/132 (2%)
Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
           ++TIG          +   ++F  WDTAG E++  L   YY   Q AI+++D+T   ++ 
Sbjct: 35  ESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFA 94
Query: 68  NVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKSNYN 124
               W ++L R    NI I L GNK D+ N R V  ++   +   N L + E SAK++ N
Sbjct: 95  RAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN 154
Query: 125 FEKPFLYLARKL 136
             + F+ +A+KL
Sbjct: 155 VNEIFMAIAKKL 166

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 3/125 (2%)
Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
           K+TIGVE        +   I+   WDTAG E++  +   YY     A++++D+   LTY+
Sbjct: 35  KSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYE 94
Query: 68  NVPTWHRDLC-RVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYN 124
           NV  W ++L      NI I L GNK D+++ R V   +   F  K  L + E SA  + N
Sbjct: 95  NVERWLKELRDHADSNIVIXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTN 154
Query: 125 FEKPF 129
            E  F
Sbjct: 155 VEAAF 159

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 7/134 (5%)
Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIGVE    D   +   +    WDTAGQE+F  LR  +Y    C ++ F V    +++N+
Sbjct: 41  TIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL 100
Query: 70  PTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSN 122
             W ++          E+ P V+ GNK+D+  RQV  ++     + N    Y+E SAK  
Sbjct: 101 SNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDA 160
Query: 123 YNFEKPFLYLARKL 136
            N    F    R++
Sbjct: 161 TNVAAAFEEAVRRV 174

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 7/133 (5%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           +TIGV+        +   I+   WDTAGQE+F  +   YY      I+++DVT + ++ N
Sbjct: 37  STIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNN 96
Query: 69  VPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNY 123
           V  W +++ R   EN+  +L GNK D+  ++V     AK+  F     + + E SAK+  
Sbjct: 97  VKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKE--FADSLGIPFLETSAKNAT 154
Query: 124 NFEKPFLYLARKL 136
           N E+ F+ +A ++
Sbjct: 155 NVEQSFMTMAAEI 167

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 7/133 (5%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           +TIGV+        +   I+   WDTAGQE+F  +   YY      I+++DVT + ++ N
Sbjct: 47  STIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNN 106
Query: 69  VPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNY 123
           V  W +++ R   EN+  +L GNK D+  ++V     AK+  F     + + E SAK+  
Sbjct: 107 VKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKE--FADSLGIPFLETSAKNAT 164
Query: 124 NFEKPFLYLARKL 136
           N E+ F+ +A ++
Sbjct: 165 NVEQSFMTMAAEI 177

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 7/133 (5%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           +TIGV+        +   I+   WDTAGQE+F  +   YY      I+++DVT + ++ N
Sbjct: 30  STIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNN 89
Query: 69  VPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNY 123
           V  W +++ R   EN+  +L GNK D+  ++V     AK+  F     + + E SAK+  
Sbjct: 90  VKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKE--FADSLGIPFLETSAKNAT 147
Query: 124 NFEKPFLYLARKL 136
           N E+ F+ +A ++
Sbjct: 148 NVEQSFMTMAAEI 160

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 7/133 (5%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           +TIGV+        +   I+   WDTAGQE+F  +   YY      I+++DVT + ++ N
Sbjct: 56  STIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNN 115
Query: 69  VPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNY 123
           V  W +++ R   EN+  +L GNK D+  ++V     AK+  F     + + E SAK+  
Sbjct: 116 VKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKE--FADSLGIPFLETSAKNAT 173
Query: 124 NFEKPFLYLARKL 136
           N E+ F+ +A ++
Sbjct: 174 NVEQSFMTMAAEI 186

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 7/134 (5%)
Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIGVE    D   +   +    WDTAGQE+F  LR  +Y    C ++ F V  R +++N+
Sbjct: 39  TIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENL 98
Query: 70  PTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAK--QVTFHRKKNLQYYEISAKSN 122
             W ++          E+ P V+ GNKVD ++RQV  +  Q       +  Y E SAK +
Sbjct: 99  GNWQKEFIYYADVKDPEHFPFVVLGNKVDKEDRQVTTEEAQTWCMENGDYPYLETSAKDD 158
Query: 123 YNFEKPFLYLARKL 136
            N    F    R++
Sbjct: 159 TNVTVAFEEAVRQV 172

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 7/133 (5%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           +TIGV+        +   I+   WDTAGQE+F  +   YY      I+++DVT + ++ N
Sbjct: 37  STIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNN 96
Query: 69  VPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNY 123
           V  W +++ R   EN+  +L GNK D+  ++V     AK+  F     + + E SAK+  
Sbjct: 97  VKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKE--FADSLGIPFLETSAKNAT 154
Query: 124 NFEKPFLYLARKL 136
           N E+ F+ +A ++
Sbjct: 155 NVEQSFMTMAAEI 167

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 73/136 (53%), Gaps = 12/136 (8%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           +TIGV+           +++   WDTAGQE+F  +   YY     AI+ +D+T R ++ +
Sbjct: 60  STIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLS 119
Query: 69  VPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEI------SAK 120
           VP W  D+ +    NI  +L GNK D+     + ++V+    ++L ++Y+I      SAK
Sbjct: 120 VPHWIEDVRKYAGSNIVQLLIGNKSDLS----ELREVSLAEAQSLAEHYDILCAIETSAK 175
Query: 121 SNYNFEKPFLYLARKL 136
            + N E+ FL +A +L
Sbjct: 176 DSSNVEEAFLRVATEL 191

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 3/134 (2%)
Query: 6   WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT 65
           + ++TIG          +   ++F  WDTAG E++  L   YY   Q AI+++D+T   T
Sbjct: 33  YQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNTDT 92
Query: 66  YKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKSN 122
           +     W ++L R    NI I L GNK D+ + R V+ ++   +   N L + E SAK+ 
Sbjct: 93  FARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTA 152
Query: 123 YNFEKPFLYLARKL 136
            N  + F+ +A+KL
Sbjct: 153 MNVNEIFMAIAKKL 166

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 71/135 (52%), Gaps = 11/135 (8%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           +TIGV+            ++   WDTAGQE+F  +   YY      II++DVT R ++ N
Sbjct: 40  STIGVDFKIRTISLENKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDN 99
Query: 69  VPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL------QYYEISAKS 121
           V  W +++ R   EN+  +L GNK D+ +++V    VT    + L      ++ E SAK+
Sbjct: 100 VKQWIQEIDRYAMENVNKLLVGNKCDLVSKRV----VTSDEGRELADSHGIKFIETSAKN 155
Query: 122 NYNFEKPFLYLARKL 136
            YN E+ F  +A ++
Sbjct: 156 AYNVEQAFHTMAGEI 170

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 75/148 (50%), Gaps = 11/148 (7%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           +TIG++        +  +I+   WDTAGQE+F  +   YY      ++++D+T   ++ N
Sbjct: 39  STIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 98
Query: 69  VPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL------QYYEISAKS 121
           +  W R++      ++  ++ GNK DV ++    +QV+  R + L      ++ E SAK+
Sbjct: 99  IRNWIRNIEEHASADVEKMILGNKCDVNDK----RQVSKERGEKLALDYGIKFMETSAKA 154
Query: 122 NYNFEKPFLYLARKLAGDPNLHFVESPA 149
           N N E  F  LAR +    + ++  + A
Sbjct: 155 NINVENAFFTLARDIKAKMDKNWKATAA 182

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 70/134 (52%), Gaps = 3/134 (2%)
Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
           +ATIG++      +     IR   WDTAGQE+F  L   Y      A++++D+T   +++
Sbjct: 36  QATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQ 95
Query: 68  NVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYN 124
               W  D+      ++ I+L GNK D+ + RQV  ++     K+ N+ + E SAK+ YN
Sbjct: 96  QTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN 155
Query: 125 FEKPFLYLARKLAG 138
            ++ F  +A  L G
Sbjct: 156 VKQLFRRVAAALPG 169

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 69/134 (51%), Gaps = 3/134 (2%)
Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
           +ATIG++      +     +R   WDTAGQE+F  L   Y      A++++D+T   ++ 
Sbjct: 44  QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFH 103
Query: 68  NVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYN 124
               W  D+      ++ I+L GNK D+ + RQV  ++     K+ N+ + E SAK+ YN
Sbjct: 104 QTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 163
Query: 125 FEKPFLYLARKLAG 138
            ++ F  +A  L G
Sbjct: 164 VKQLFRRVAAALPG 177

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 6/133 (4%)
Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIG          N   ++F  WDTAGQE+F  L   YY + Q A++++DVT   ++   
Sbjct: 35  TIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKA 94
Query: 70  PTWHRDLC-RVCENIPIVLCGNKVDV-----KNRQVKAKQVTFHRKKNLQYYEISAKSNY 123
             W ++L  +  ++I I L GNK+D      + +  + +      +K L ++E SAK+  
Sbjct: 95  RHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGE 154
Query: 124 NFEKPFLYLARKL 136
           N    FL +  K+
Sbjct: 155 NVNDVFLGIGEKI 167

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 70/135 (51%), Gaps = 11/135 (8%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           +TIG++        +  +I+   WDTAGQE+F  +   YY      ++++D+T   ++ N
Sbjct: 37  STIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 96
Query: 69  VPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL------QYYEISAKS 121
           +  W R++      ++  ++ GNK DV ++    +QV+  R + L      ++ E SAK+
Sbjct: 97  IRNWIRNIEEHASADVEKMILGNKCDVNDK----RQVSKERGEKLALDYGIKFMETSAKA 152
Query: 122 NYNFEKPFLYLARKL 136
           N N E  F  LAR +
Sbjct: 153 NINVENAFFTLARDI 167

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 2/115 (1%)
Query: 23  NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN 82
           N   I+F  WDTAGQE++  +   YY    CAI++FD++   T     TW   L ++  N
Sbjct: 89  NLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQL-KISSN 147
Query: 83  IPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
             I+L  NK+D    QV   +V  + +  NL + + SAK+  N +  F  LA ++
Sbjct: 148 YIIILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEI 202

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 3/131 (2%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           +TIGV+        +   ++   WDTAGQE+F  +   YY      II++DVT + ++  
Sbjct: 52  STIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNG 111
Query: 69  VPTWHRDLCRVCENIPI-VLCGNKVDVKNRQVKAKQVT--FHRKKNLQYYEISAKSNYNF 125
           V  W +++ R   +  + +L GNK D+K+++V    V   F     + + E SA  + N 
Sbjct: 112 VKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNV 171
Query: 126 EKPFLYLARKL 136
           E  FL +AR++
Sbjct: 172 EDAFLTMARQI 182

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 69.7 bits (169), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 2/128 (1%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
            TIG++        N  K++   WDTAGQE+F  +   YY      I+++DVT   T+ N
Sbjct: 38  TTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTN 97
Query: 69  VPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFE 126
           +  W + +     +   ++L GNK D++ R V A Q     ++  + + E SAK++ N  
Sbjct: 98  IKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVN 157
Query: 127 KPFLYLAR 134
           + F  LA+
Sbjct: 158 EIFFTLAK 165

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 69.7 bits (169), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 2/128 (1%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
            TIG++        N  K++   WDTAGQE+F  +   YY      I+++DVT   T+ N
Sbjct: 51  TTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTN 110
Query: 69  VPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFE 126
           +  W + +     +   ++L GNK D++ R V A Q     ++  + + E SAK++ N  
Sbjct: 111 IKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVN 170
Query: 127 KPFLYLAR 134
           + F  LA+
Sbjct: 171 EIFFTLAK 178

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 67/127 (52%), Gaps = 4/127 (3%)
Query: 7   GKATIGVEVHPLDF-FTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT 65
            K+TIGVE         N   I+   WDTAGQE++  +   YY     A++++D+T + +
Sbjct: 36  SKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKNS 95
Query: 66  YKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSN 122
           ++N+  W ++L    + NI I+L GNK D+K+ +V        + +K+ L + E SA   
Sbjct: 96  FENIEKWLKELRDNADSNIVILLVGNKSDLKHLRVINDNDATQYAKKEKLAFIETSALEA 155
Query: 123 YNFEKPF 129
            N E  F
Sbjct: 156 TNVELAF 162

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 70/131 (53%), Gaps = 3/131 (2%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           +T+G++        +  K++   WDTAGQE+F  +   YY      ++++DVT + ++ N
Sbjct: 42  STVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDN 101
Query: 69  VPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNF 125
           +  W  ++    + ++ ++L GNKVD  + +V  ++      ++  L + E SAK+  N 
Sbjct: 102 IQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNV 161
Query: 126 EKPFLYLARKL 136
           +  F  +A++L
Sbjct: 162 DLAFTAIAKEL 172

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 2/128 (1%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
            TIG++        N  K++   WDTAGQE+F  +   YY      I+++D+T   T+ N
Sbjct: 34  TTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTN 93
Query: 69  VPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFE 126
           +  W + +     +   ++L GNK D++ R V A Q     ++  + + E SAK++ N  
Sbjct: 94  IKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVN 153
Query: 127 KPFLYLAR 134
           + F  LA+
Sbjct: 154 EIFFTLAK 161

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 57/106 (53%), Gaps = 4/106 (3%)
Query: 26  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENI 83
           K+    WDTAGQE+F  L   ++      ++MFD+T++ ++ NV  W   L     CEN 
Sbjct: 83  KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 142
Query: 84  PIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEK 127
            IVL GNK D+ + R+V  +Q      K  + Y+E SA +  N EK
Sbjct: 143 DIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEK 188

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 3/131 (2%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           +TIGV+        +   ++   WDTAGQE+F  +   YY      II++DVT + ++  
Sbjct: 39  STIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNG 98
Query: 69  VPTWHRDLCRVCENIPI-VLCGNKVDVKNRQVKAKQVT--FHRKKNLQYYEISAKSNYNF 125
           V  W +++ R   +  + +L GNK D+K+++V    V   F     + + E SA  + N 
Sbjct: 99  VKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNV 158
Query: 126 EKPFLYLARKL 136
           E  FL +AR++
Sbjct: 159 EDAFLTMARQI 169

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 7/133 (5%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           +TIGV+        +   I+   WDTAGQE+F  +   YY      I+++DVT + ++ N
Sbjct: 64  STIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNN 123
Query: 69  VPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNY 123
           V  W +++ R   EN+  +L GNK D+  ++V     AK+  F     + + E SAK+  
Sbjct: 124 VKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKE--FADSLGIPFLETSAKNAT 181
Query: 124 NFEKPFLYLARKL 136
           N E+ F   A ++
Sbjct: 182 NVEQSFXTXAAEI 194

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 3/131 (2%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           +TIGV+        +   ++   WDTAGQE+F  +   YY      II++DVT + ++  
Sbjct: 39  STIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNG 98
Query: 69  VPTWHRDLCRVCENIPI-VLCGNKVDVKNRQVKAKQVT--FHRKKNLQYYEISAKSNYNF 125
           V  W +++ R   +  + +L GNK D+K+++V    V   F     + + E SA  + N 
Sbjct: 99  VKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNV 158
Query: 126 EKPFLYLARKL 136
           E  FL +AR++
Sbjct: 159 EDAFLTMARQI 169

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 2/128 (1%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
            TIG++        N  K++   WDTAGQE+F  +   YY      I+++DVT   T+ N
Sbjct: 34  TTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAXGIILVYDVTDERTFTN 93
Query: 69  VPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFE 126
           +  W + +     +   ++L GNK D + R V A Q     ++  + + E SAK++ N  
Sbjct: 94  IKQWFKTVNEHANDEAQLLLVGNKSDXETRVVTADQGEALAKELGIPFIESSAKNDDNVN 153
Query: 127 KPFLYLAR 134
           + F  LA+
Sbjct: 154 EIFFTLAK 161

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 7/133 (5%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           +TIGV+        +   I+   WDTAGQE+F  +   YY      I+++DVT + ++ N
Sbjct: 39  STIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNN 98
Query: 69  VPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNY 123
           V  W +++ R   EN+  +L G K D+  ++V     AK+  F     + + E SAK+  
Sbjct: 99  VKQWLQEIDRYASENVNKLLVGIKCDLTTKKVVDYTTAKE--FADSLGIPFLETSAKNAT 156
Query: 124 NFEKPFLYLARKL 136
           N E+ F+ +A ++
Sbjct: 157 NVEQSFMTMAAEI 169

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 68/128 (53%), Gaps = 3/128 (2%)
Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
           K+TIGVE           +I+   WDTAGQE++  +   YY     A+I++D++   +Y+
Sbjct: 43  KSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYE 102
Query: 68  NVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYN 124
           N   W  +L     +N+ + L GNK D+ + R V  ++  TF ++  L + E SA ++ N
Sbjct: 103 NCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSEN 162
Query: 125 FEKPFLYL 132
            +K F  L
Sbjct: 163 VDKAFEEL 170

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 2/128 (1%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
            TIG++        N  K++   WDTAGQE+F  +   YY      I+++D+T   T+ N
Sbjct: 34  TTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAXGIILVYDITDERTFTN 93
Query: 69  VPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFE 126
           +  W + +     +   ++L GNK D + R V A Q     ++  + + E SAK++ N  
Sbjct: 94  IKQWFKTVNEHANDEAQLLLVGNKSDXETRVVTADQGEALAKELGIPFIESSAKNDDNVN 153
Query: 127 KPFLYLAR 134
           + F  LA+
Sbjct: 154 EIFFTLAK 161

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 69/134 (51%), Gaps = 3/134 (2%)
Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
           +ATIG++      +     IR   WDTAG E+F  L   Y      A++++D+T   +++
Sbjct: 43  QATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQ 102
Query: 68  NVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYN 124
               W  D+      ++ I+L GNK D+ + RQV  ++     K+ N+ + E SAK+ YN
Sbjct: 103 QTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN 162
Query: 125 FEKPFLYLARKLAG 138
            ++ F  +A  L G
Sbjct: 163 VKQLFRRVAAALPG 176

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 69/132 (52%), Gaps = 3/132 (2%)
Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
           +ATIG++      +     +R   WDTAGQE+F  L   Y      A++++D+T   +++
Sbjct: 31  QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQ 90
Query: 68  NVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYN 124
               W  D+      ++ I+L GNK D+ + RQV  ++     K+ N+ + E SAK+ YN
Sbjct: 91  QTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN 150
Query: 125 FEKPFLYLARKL 136
            ++ F  +A  L
Sbjct: 151 VKQLFRRVAAAL 162

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 3/134 (2%)
Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
           +ATIG++      +     +R   WDTAG E+F  L   Y      A++++D+T   +++
Sbjct: 46  QATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQ 105
Query: 68  NVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYN 124
               W  D+      ++ I+L GNK D+ + RQV  ++     K+ N+ + E SAK+ YN
Sbjct: 106 QTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN 165
Query: 125 FEKPFLYLARKLAG 138
            ++ F  +A  L G
Sbjct: 166 VKQLFRRVAAALPG 179

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 3/134 (2%)
Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
           +ATIG++      +     +R   WDTAG E+F  L   Y      A++++D+T   +++
Sbjct: 36  QATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQ 95
Query: 68  NVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYN 124
               W  D+      ++ I+L GNK D+ + RQV  ++     K+ N+ + E SAK+ YN
Sbjct: 96  QTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN 155
Query: 125 FEKPFLYLARKLAG 138
            ++ F  +A  L G
Sbjct: 156 VKQLFRRVAAALPG 169

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 26  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENI 83
           +++    DTAGQE +  +RD Y+  G+  + +F +T   ++     +   + RV   EN+
Sbjct: 65  EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV 124
Query: 84  PIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 136
           P +L GNK D+++ RQV  ++     ++ N+ Y E SAK+  N +K F  L R++
Sbjct: 125 PFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 26  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENI 83
           +++    DTAGQE +  +RD Y+  G+  + +F +T   ++     +   + RV   EN+
Sbjct: 53  EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV 112
Query: 84  PIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 136
           P +L GNK D+++ RQV  ++     ++ N+ Y E SAK+  N +K F  L R++
Sbjct: 113 PFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 62/111 (55%), Gaps = 4/111 (3%)
Query: 28  RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPI 85
           R    DTAGQE+FG +R+ Y   G+  +++F VT R +++ +  + R + RV   +  P+
Sbjct: 54  RLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPM 113
Query: 86  VLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 134
           +L GNK D+ + RQV  ++     R+  + Y E SAK   N ++ F  L R
Sbjct: 114 ILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVR 164

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 26  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENI 83
           K+    WDTAG E+F  L   ++      ++MFD+T++ ++ NV  W   L     CEN 
Sbjct: 69  KVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 128
Query: 84  PIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKP 128
            IVL GNK D+ + R+V  +Q      K  + Y+E SA +  N EK 
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 3/132 (2%)
Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
           +ATIG++      +     +R   WDTAGQE+F  L   Y      A++++D+T   +++
Sbjct: 32  QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQ 91
Query: 68  NVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ--YYEISAKSNYN 124
               W  D+      ++ I+L GNK D+ +++    +    R K L   + E SAK+ YN
Sbjct: 92  QTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYN 151
Query: 125 FEKPFLYLARKL 136
            ++ F  +A  L
Sbjct: 152 VKQLFRRVASAL 163

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 26  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENI 83
           +++    DTAGQE +  +RD Y+  G+  + +F +T   ++     +   + RV   EN+
Sbjct: 51  EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV 110
Query: 84  PIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 136
           P +L GNK D+++ RQV  ++      + N+ Y E SAK+  N +K F  L R++
Sbjct: 111 PFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 26  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENI 83
           K+    WDTAG E+F  L   ++      ++MFD+T++ ++ NV  W   L     CEN 
Sbjct: 69  KVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 128
Query: 84  PIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKP 128
            IVL GNK D+ + R+V  +Q      K  + Y+E SA +  N EK 
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 26  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENI 83
           +++    DTAGQE +  +RD Y+  G+  + +F +T   ++     +   + RV   EN+
Sbjct: 61  EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV 120
Query: 84  PIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 136
           P +L GNK D+++ RQV  ++     ++ N+ Y E SAK+  N +K F  L R++
Sbjct: 121 PFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 66/126 (52%), Gaps = 7/126 (5%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           +T+G++      + N  +I+   WDTAGQE++  +   YY      I+M+D+T   ++  
Sbjct: 36  STVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNA 95
Query: 69  VPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNY 123
           V  W   +     +N  ++L GNK D+++ +V    + +Q+  H     +++E SAK N 
Sbjct: 96  VQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHL--GFEFFEASAKDNI 153
Query: 124 NFEKPF 129
           N ++ F
Sbjct: 154 NVKQTF 159

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 62/113 (54%), Gaps = 4/113 (3%)
Query: 28  RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPI 85
           R    DTAGQE+FG +R+ Y   G   +++F +  R ++  V      + RV   ++ P+
Sbjct: 58  RLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPV 117
Query: 86  VLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           VL GNK D+++ RQV +++   F    ++ Y+E SAK   N ++ F  L R +
Sbjct: 118 VLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 3/125 (2%)
Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
           + TIGVE            ++   WDTAG E++  +   YY     A+++FD+T   TY 
Sbjct: 55  RTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYA 114
Query: 68  NVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYN 124
            V  W ++L    E  I ++L GNK D+   R+V  ++   F     L + E SA  + N
Sbjct: 115 VVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTN 174
Query: 125 FEKPF 129
            E  F
Sbjct: 175 VELAF 179

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 3/125 (2%)
Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
           + TIGVE            ++   WDTAG E++  +   YY     A+++FD+T   TY 
Sbjct: 40  RTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYA 99
Query: 68  NVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYN 124
            V  W ++L    E  I ++L GNK D+   R+V  ++   F     L + E SA  + N
Sbjct: 100 VVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTN 159
Query: 125 FEKPF 129
            E  F
Sbjct: 160 VELAF 164

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 26  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IP 84
           ++    WDTAGQE+F  L   YY     AI+++D+T   +++ V  W ++L ++  N I 
Sbjct: 68  RVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEIC 127
Query: 85  IVLCGNKVDV-KNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           + + GNK+D+ K R V  ++  ++      ++Y  SAK N   E+ FL L +++
Sbjct: 128 LCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 181

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 65/120 (54%), Gaps = 5/120 (4%)
Query: 22  TNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-- 79
            +C +      DTAG E+F  +RD Y  +GQ   +++ +TA+ T+ ++      + RV  
Sbjct: 46  VDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD 105
Query: 80  CENIPIVLCGNKVDVKNRQVKAKQVTFHRKK---NLQYYEISAKSNYNFEKPFLYLARKL 136
            E++P++L GNK D+++ +V  K+   +  +   N  + E SAKS  N  + F  L R++
Sbjct: 106 TEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 26  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IP 84
           ++    WDTAGQE+F  L   YY     AI+++D+T   +++ V  W ++L ++  N I 
Sbjct: 54  RVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEIC 113
Query: 85  IVLCGNKVDV-KNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           + + GNK+D+ K R V  ++  ++      ++Y  SAK N   E+ FL L +++
Sbjct: 114 LCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 65/120 (54%), Gaps = 5/120 (4%)
Query: 22  TNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-- 79
            +C +      DTAG E+F  +RD Y  +GQ   +++ +TA+ T+ ++      + RV  
Sbjct: 46  VDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD 105
Query: 80  CENIPIVLCGNKVDVKNRQVKAKQVTFHRKK---NLQYYEISAKSNYNFEKPFLYLARKL 136
            E++P++L GNK D+++ +V  K+   +  +   N  + E SAKS  N  + F  L R++
Sbjct: 106 TEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 26  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IP 84
           ++    WDTAGQE+F  L   YY     AI+++D+T   +++ V  W ++L ++  N I 
Sbjct: 54  RVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEIC 113
Query: 85  IVLCGNKVDV-KNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           + + GNK+D+ K R V  ++  ++      ++Y  SAK N   E+ FL L +++
Sbjct: 114 LCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 26  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENI 83
           +++    DTAG E +  +RD Y+  G+  + +F +T   ++     +   + RV   EN+
Sbjct: 53  EVQIDILDTAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV 112
Query: 84  PIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 136
           P +L GNK D+++ RQV  ++     ++ N+ Y E SAK+  N +K F  L R++
Sbjct: 113 PFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90  NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 116 NKCDLAGRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 11/138 (7%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           AT+GV+        +  +     WDTAGQE+F  +   Y+      ++++DVT   ++ N
Sbjct: 59  ATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLN 118
Query: 69  VPTWHRDLCR--VCENIPIVLCGNKVDVKNRQVKAKQVT----FHRKKNLQYY----EIS 118
           +  W  D+      E +PI+L GNK D+++      Q      F  K  + Y     E S
Sbjct: 119 IREWV-DMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETS 177
Query: 119 AKSNYNFEKPFLYLARKL 136
           AK   N  +  L+LAR++
Sbjct: 178 AKDGSNIVEAVLHLAREV 195

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
Query: 26  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENI 83
           K+    WDTAG E+F  L   ++      ++ FD+T++ ++ NV  W   L     CEN 
Sbjct: 69  KVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENP 128
Query: 84  PIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKP 128
            IVL GNK D+ + R+V  +Q      K  + Y+E SA +  N EK 
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 4/107 (3%)
Query: 26  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENI 83
           K+    WDTAG E+F  L   ++      ++ FD+T++ ++ NV  W   L     CEN 
Sbjct: 69  KVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENP 128
Query: 84  PIVLCGNKVDV-KNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKP 128
            IVL GNK D+   R+V  +Q      K  + Y+E SA +  N EK 
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 62  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 121
Query: 90  NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 122 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 169

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90  NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 63  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 122
Query: 90  NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 170

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90  NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 116 NKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90  NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 61  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 120
Query: 90  NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 121 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 61  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 120
Query: 90  NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 121 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90  NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90  NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90  NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90  NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 56  LDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90  NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90  NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90  NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90  NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90  NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90  NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90  NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90  NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90  NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90  NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 8   KATIGVEVHPLDFFTNCGKI-RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTY 66
           KATIG +    +   +  K+     WDTAGQE+F  L   +Y    C ++++DVT   ++
Sbjct: 38  KATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSF 97
Query: 67  KNVPTWHRDLCRVCENI------PIVLCGNKVDV-KNRQVKAKQVTFHRKKNLQ---YYE 116
           +N+ +W RD   V  N+      P V+ GNK+D  +++++ +++      K+L     + 
Sbjct: 98  ENIKSW-RDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFL 156
Query: 117 ISAKSNYNFEKPFLYLAR 134
            SAK+  N +  F  +AR
Sbjct: 157 TSAKNAINVDTAFEEIAR 174

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90  NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+  R V+++Q     R   + Y E SAK+    E  F  L R+ 
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREF 163

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90  NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           N+ D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 116 NRCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   E++P+VL G
Sbjct: 57  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 116
Query: 90  NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+ +R V  KQ     R   + + E SAK+    +  F  L R++
Sbjct: 117 NKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 5/109 (4%)
Query: 33  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGN 90
           DTAG E+F  +RD Y  +GQ   +++ +TA+ T+ ++      + RV   +++P++L GN
Sbjct: 59  DTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGN 118
Query: 91  KVDVKNRQVKAK---QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           K D+++ +V  K   Q    +  N  + E SAKS  N  + F  L R++
Sbjct: 119 KCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 5/109 (4%)
Query: 33  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGN 90
           DTAG E+F  +RD Y  +GQ   +++ +TA+ T+ ++      + RV   +++P++L GN
Sbjct: 57  DTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGN 116
Query: 91  KVDVKNRQVKAK---QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           K D+++ +V  K   Q    +  N  + E SAKS  N  + F  L R++
Sbjct: 117 KCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   E++P+VL G
Sbjct: 57  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 116
Query: 90  NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+ +R V  KQ     R   + + E SAK+    +  F  L R++
Sbjct: 117 NKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   E++P+VL G
Sbjct: 57  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 116
Query: 90  NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+ +R V  KQ     R   + + E SAK+    +  F  L R++
Sbjct: 117 NKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 28  RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIV 86
           +F  WDTAGQE+F  L   YY     AII++D+T   T+  +  W R+L +    +I + 
Sbjct: 55  KFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVA 114
Query: 87  LCGNKVDVKN-RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           + GNK D+ + R+V  +    +    +  + E SAK+  N  + F+ ++R++
Sbjct: 115 IAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAGQE+   +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 56  LDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90  NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   E++P+VL G
Sbjct: 57  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 116
Query: 90  NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+ +R V  KQ     R   + + E SAK+    +  F  L R++
Sbjct: 117 NKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DT GQE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 56  LDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90  NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DT GQE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 56  LDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90  NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAG+E++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 56  LDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90  NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTA QE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 56  LDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90  NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 116 NKXDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 3/132 (2%)
Query: 4   SVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR 63
           ++  K+TIGVE           KI+   WDTAG E++  +   YY     A+I++D++  
Sbjct: 36  NIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLERYRAITSAYYRGAVGALIVYDISKS 95
Query: 64  LTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAK 120
            +Y+N   W  +L     +N+ + L GNK D+ + R V   +   F  +  + + E SA 
Sbjct: 96  SSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSAL 155
Query: 121 SNYNFEKPFLYL 132
           ++ N +K F  L
Sbjct: 156 NSDNVDKAFREL 167

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTA QE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 56  LDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90  NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 116 NKXDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 64/129 (49%), Gaps = 7/129 (5%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           +T+G++      + N  +I+   WDTAG E++  +   YY      I+ +D+T   ++  
Sbjct: 39  STVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAXGFILXYDITNEESFNA 98
Query: 69  VPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNY 123
           V  W   +     +N  ++L GNK D ++ +V    + +Q+  H     +++E SAK N 
Sbjct: 99  VQDWSTQIKTYSWDNAQVLLVGNKCDXEDERVVSSERGRQLADHL--GFEFFEASAKDNI 156
Query: 124 NFEKPFLYL 132
           N ++ F  L
Sbjct: 157 NVKQTFERL 165

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAG E++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 56  LDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90  NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 26  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---EN 82
           +++    DTAG E +  +RD Y+  G+  +++F +T   ++     +   + RV    + 
Sbjct: 54  EVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDK 113
Query: 83  IPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 136
           IP+++ GNK D++  RQV  ++     ++  +QY E SAK+  N +K F  L R++
Sbjct: 114 IPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 26  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---EN 82
           +++    DTAG E +  +RD Y+  G+  +++F +T   ++     +   + RV    + 
Sbjct: 50  EVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDK 109
Query: 83  IPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 136
           IP+++ GNK D++  RQV  ++     ++  +QY E SAK+  N +K F  L R++
Sbjct: 110 IPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAG E++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 61  LDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 120
Query: 90  NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 121 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 28  RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIV 86
           +F  WDTAGQE+F  L   YY     A+I++D+T + ++  +  W ++L     ENI + 
Sbjct: 73  KFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMA 132
Query: 87  LCGNKVDVKN-RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           + GNK D+ + R+V  K    +         E SAK+  N E+ F  ++R++
Sbjct: 133 IAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAG E++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 56  LDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90  NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAG E++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 56  LDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90  NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAG E++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 56  LDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90  NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 5/109 (4%)
Query: 31  CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLC 88
             DTAGQE+F  +R+ Y   G   +I++ VT + ++++V  +H+ + RV   E+ P++L 
Sbjct: 70  VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 129
Query: 89  GNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKS-NYNFEKPFLYLAR 134
            NKVD+ + R+V   Q      K N+ Y E SAK    N +K F  L R
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAG E++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 56  LDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90  NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 5/109 (4%)
Query: 31  CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLC 88
             DTAGQE+F  +R+ Y   G   +I++ VT + ++++V  +H+ + RV   E+ P++L 
Sbjct: 65  VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 124
Query: 89  GNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKS-NYNFEKPFLYLAR 134
            NKVD+ + R+V   Q      K N+ Y E SAK    N +K F  L R
Sbjct: 125 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 173

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 5/109 (4%)
Query: 31  CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLC 88
             DTAGQE+F  +R+ Y   G   +I++ VT + ++++V  +H+ + RV   E+ P++L 
Sbjct: 70  VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 129
Query: 89  GNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKS-NYNFEKPFLYLAR 134
            NKVD+ + R+V   Q      K N+ Y E SAK    N +K F  L R
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAG E++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 56  LDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 90  NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 116 NKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 5/109 (4%)
Query: 31  CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLC 88
             DTAGQE+F  +R+ Y   G   +I++ VT + ++++V  +H+ + RV   E+ P++L 
Sbjct: 70  VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 129
Query: 89  GNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKS-NYNFEKPFLYLAR 134
            NKVD+ + R+V   Q      K N+ Y E SAK    N +K F  L R
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           +T+G++      + +  +++   WDTAGQE++  +   YY      I+M+D+T   ++  
Sbjct: 54  STVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNA 113
Query: 69  VPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNF 125
           V  W   +     +N  ++L GNK D++  +V    K      +    ++E SAK N + 
Sbjct: 114 VQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISV 173
Query: 126 EKPF 129
            + F
Sbjct: 174 RQAF 177

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 3/108 (2%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAGQE++  +RD Y   G+  + +F +    ++ ++  +   + RV   +++P+VL G
Sbjct: 74  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVG 133
Query: 90  NKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+  R V  KQ     +   + + E SAK+    E  F  L R++
Sbjct: 134 NKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI 181

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 64/124 (51%), Gaps = 3/124 (2%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           +T+G++      + +  +I+   WDTAGQE++  +   YY      ++M+D+  + ++  
Sbjct: 53  STVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAA 112
Query: 69  VPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL--QYYEISAKSNYNF 125
           V  W   +     +N  ++L GNK D+++ +V   +       +L  +++E SAK N N 
Sbjct: 113 VQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINV 172
Query: 126 EKPF 129
           ++ F
Sbjct: 173 KQVF 176

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 3/108 (2%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAG E++  +RD Y   G+  + +F +    +++++  +   + RV   E++P+VL G
Sbjct: 74  LDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 133
Query: 90  NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+ +R V  KQ     R   + + E SAK+    +  F  L R++
Sbjct: 134 NKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 181

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 10/138 (7%)
Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-GGLRDGYYIHGQCAIIMFDVTARLTY 66
           +ATIGV+        +  +I+   WDTAGQE+F   +   YY +    + ++D+T   ++
Sbjct: 50  EATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASF 109
Query: 67  KNVPTWHRDLCR---VCENIPIVLCGNKVDVKNR-QVKAKQVT-FHRKKNLQYYEISAKS 121
            ++P W  + C+   +  +IP +L GNK D+++  QV       F    ++  +E SAK+
Sbjct: 110 HSLPAWIEE-CKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKN 168
Query: 122 ---NYNFEKPFLYLARKL 136
              N + E  F+ LA KL
Sbjct: 169 PNDNDHVEAIFMTLAHKL 186

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 26  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENI 83
           +I    WDTAG E+F  L   ++      +++FD+T   ++ NV  W   L      EN 
Sbjct: 69  RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENP 128
Query: 84  PIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYN 124
            IVLCGNK D+++ R VK ++      K  + Y+E SA +  N
Sbjct: 129 DIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTN 171

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 28  RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIV 86
           +F  WDTAG E+F  L   YY     AII++D+T   T+  +  W R+L +    +I + 
Sbjct: 56  KFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVA 115
Query: 87  LCGNKVDVKN-RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           + GNK D+ + R+V  +    +    +  + E SAK+  N  + F+ ++R++
Sbjct: 116 IAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           +TIGV+        +   I+   WDTAGQE+F  +   YY      I+++DVT + ++ N
Sbjct: 29  STIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNN 88
Query: 69  VPTWHRDLCR-VCENIPIVLCGNKVDV 94
           V  W +++ R   EN+  +L GNK D+
Sbjct: 89  VKQWLQEIDRYASENVNKLLVGNKCDL 115

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 26  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIP 84
           ++    WDTAGQE +  LR   Y      +I F +    + +NV   W  ++   C+ +P
Sbjct: 57  RVELALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVP 116
Query: 85  IVLCGNKVDVKN--------RQVKAKQVTFHRKKNLQ-------YYEISAKSNYNFEKPF 129
           I+L G KVD++N        RQ   + VT    +++        YYE SAK+ Y   + F
Sbjct: 117 IILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVF 176
Query: 130 LYLAR 134
               R
Sbjct: 177 EAATR 181

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 10/138 (7%)
Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-GGLRDGYYIHGQCAIIMFDVTARLTY 66
           +ATIGV+        +  +I+   WDTAGQE+F   +   YY +    + ++D T   ++
Sbjct: 59  EATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASF 118
Query: 67  KNVPTWHRDLCR---VCENIPIVLCGNKVDVKNR-QVKAKQVT-FHRKKNLQYYEISAKS 121
            ++P W  + C+   +  +IP +L GNK D+++  QV       F    +   +E SAK+
Sbjct: 119 HSLPAWIEE-CKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSXPLFETSAKN 177
Query: 122 ---NYNFEKPFLYLARKL 136
              N + E  F  LA KL
Sbjct: 178 PNDNDHVEAIFXTLAHKL 195

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 16/119 (13%)
Query: 27  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPI 85
           +  + WDTAGQ+ +  LR  +Y      ++ FDVT+  ++ N+   W+ ++   C+ +PI
Sbjct: 82  VHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPI 141
Query: 86  VLCGNKVDVKN--------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPF 129
           ++ G K D++         R+   + VT+HR + +        Y E SA+ + N    F
Sbjct: 142 IVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF 200

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 19  DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLC 77
           D   +  ++    WDTAGQE +  LR   Y      ++ F + +  + +N+P  W  ++ 
Sbjct: 45  DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 104
Query: 78  RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSN 122
             C N+PI+L GNK D++N +   +++   +++ ++               Y E SAK+ 
Sbjct: 105 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 164
Query: 123 YNFEKPFLYLAR 134
               + F    R
Sbjct: 165 DGVREVFEMATR 176

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 19  DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLC 77
           D   +  ++    WDTAGQE +  LR   Y      ++ F + +  + +N+P  W  ++ 
Sbjct: 49  DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 108
Query: 78  RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSN 122
             C N+PI+L GNK D++N +   +++   +++ ++               Y E SAK+ 
Sbjct: 109 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 168
Query: 123 YNFEKPFLYLAR 134
               + F    R
Sbjct: 169 DGVREVFEMATR 180

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 19  DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLC 77
           D   +  ++    WDTAGQE +  LR   Y      ++ F + +  + +N+P  W  ++ 
Sbjct: 43  DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 102
Query: 78  RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSN 122
             C N+PI+L GNK D++N +   +++   +++ ++               Y E SAK+ 
Sbjct: 103 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 162
Query: 123 YNFEKPFLYLAR 134
               + F    R
Sbjct: 163 DGVREVFEMATR 174

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 19  DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLC 77
           D   +  ++    WDTAGQE +  LR   Y      ++ F + +  + +N+P  W  ++ 
Sbjct: 43  DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 102
Query: 78  RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSN 122
             C N+PI+L GNK D++N +   +++   +++ ++               Y E SAK+ 
Sbjct: 103 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 162
Query: 123 YNFEKPFLYLAR 134
               + F    R
Sbjct: 163 DGVREVFEMATR 174

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 19  DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLC 77
           D   +  ++    WDTAGQE +  LR   Y      ++ F + +  + +N+P  W  ++ 
Sbjct: 46  DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 105
Query: 78  RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSN 122
             C N+PI+L GNK D++N +   +++   +++ ++               Y E SAK+ 
Sbjct: 106 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 165
Query: 123 YNFEKPFLYLAR 134
               + F    R
Sbjct: 166 DGVREVFEMATR 177

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 19  DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLC 77
           D   +  ++    WDTAGQE +   R   Y      ++ F + +  + +N+P  W  ++ 
Sbjct: 45  DIEVDGKQVELALWDTAGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 104
Query: 78  RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSN 122
             C N+PI+L GNK D++N +  A+++   +++ ++               Y E SAK+ 
Sbjct: 105 HFCPNVPIILVGNKKDLRNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTK 164
Query: 123 YNFEKPFLYLAR 134
               + F    R
Sbjct: 165 DGVREVFEMATR 176

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 19  DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLC 77
           D   +  ++    WDTAGQE +  LR   Y      ++ F + +  + +N+P  W  ++ 
Sbjct: 47  DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 106
Query: 78  RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSN 122
             C N+PI+L GNK D++N +   +++   +++ ++               Y E SAK+ 
Sbjct: 107 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 166
Query: 123 YNFEKPFLYLAR 134
               + F    R
Sbjct: 167 DGVREVFEMATR 178

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 19  DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLC 77
           D   +  ++    WDTAGQE +  LR   Y      ++ F + +  + +N+P  W  ++ 
Sbjct: 46  DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 105
Query: 78  RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSN 122
             C N+PI+L GNK D++N +   +++   +++ ++               Y E SAK+ 
Sbjct: 106 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 165
Query: 123 YNFEKPFLYLAR 134
               + F    R
Sbjct: 166 DGVREVFEMATR 177

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 19  DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLC 77
           D   +  ++    WDTAGQE +  LR   Y      ++ F + +  + +N+P  W  ++ 
Sbjct: 47  DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 106
Query: 78  RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSN 122
             C N+PI+L GNK D++N +   +++   +++ ++               Y E SAK+ 
Sbjct: 107 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 166
Query: 123 YNFEKPFLYLAR 134
               + F    R
Sbjct: 167 DGVREVFEMATR 178

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 19  DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLC 77
           D   +  ++    WDTAGQE +  LR   Y      ++ F + +  + +N+P  W  ++ 
Sbjct: 45  DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 104
Query: 78  RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSN 122
             C N+PI+L GNK D++N +   +++   +++ ++               Y E SAK+ 
Sbjct: 105 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 164
Query: 123 YNFEKPFLYLAR 134
               + F    R
Sbjct: 165 DGVREVFEMATR 176

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 19  DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLC 77
           D   +  ++    WDTAGQE +  LR   Y      ++ F + +  + +N+P  W  ++ 
Sbjct: 45  DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 104
Query: 78  RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSN 122
             C N+PI+L GNK D++N +   +++   +++ ++               Y E SAK+ 
Sbjct: 105 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 164
Query: 123 YNFEKPFLYLAR 134
               + F    R
Sbjct: 165 DGVREVFEMATR 176

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 19  DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLC 77
           D   +  ++    WDTAGQE +  LR   Y      ++ F + +  + +N+P  W  ++ 
Sbjct: 45  DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 104
Query: 78  RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSN 122
             C N+PI+L GNK D++N +   +++   +++ ++               Y E SAK+ 
Sbjct: 105 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 164
Query: 123 YNFEKPFLYLAR 134
               + F    R
Sbjct: 165 DGVREVFEMATR 176

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 19  DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLC 77
           D   +  ++    WDTAGQE +  LR   Y      ++ F + +  + +N+P  W  ++ 
Sbjct: 47  DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 106
Query: 78  RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSN 122
             C N+PI+L GNK D++N +   +++   +++ ++               Y E SAK+ 
Sbjct: 107 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 166
Query: 123 YNFEKPFLYLAR 134
               + F    R
Sbjct: 167 DGVREVFEMATR 178

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 19  DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLC 77
           D   +  ++    WDTAGQE +  LR   Y      ++ F + +  + +N+P  W  ++ 
Sbjct: 48  DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 107
Query: 78  RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSN 122
             C N+PI+L GNK D++N +   +++   +++ ++               Y E SAK+ 
Sbjct: 108 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 167
Query: 123 YNFEKPFLYLAR 134
               + F    R
Sbjct: 168 DGVREVFEMATR 179

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 12/110 (10%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           WDTAGQE +  LR   Y      ++ F + ++ +Y+NV   W  +L R   N+PIVL G 
Sbjct: 62  WDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGT 121
Query: 91  KVDVKNRQ---------VKAKQVTFHRKK--NLQYYEISAKSNYNFEKPF 129
           K+D+++ +         + + Q    RK+     Y E S+K+  N +  F
Sbjct: 122 KLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF 171

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 16/132 (12%)
Query: 19  DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLC 77
           D   +  ++    WDTAGQE +  LR   Y      ++ F + +  + +N+P  W  ++ 
Sbjct: 65  DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 124
Query: 78  RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSN 122
             C N+PI+L GNK D++  +   +++   +++ ++               Y E SAK+ 
Sbjct: 125 HFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTK 184
Query: 123 YNFEKPFLYLAR 134
               + F    R
Sbjct: 185 EGVREVFEMATR 196

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 16/132 (12%)
Query: 19  DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLC 77
           D   +  ++    WDTAG E +  LR   Y      ++ F + +  + +N+P  W  ++ 
Sbjct: 48  DIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 107
Query: 78  RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSN 122
             C N+PI+L GNK D++N +   +++   +++ ++               Y E SAK+ 
Sbjct: 108 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 167
Query: 123 YNFEKPFLYLAR 134
               + F    R
Sbjct: 168 DGVREVFEMATR 179

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 16/132 (12%)
Query: 19  DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLC 77
           D   +  ++    WDTAGQE +  LR   Y      ++ F + +  + +N+P  W  ++ 
Sbjct: 45  DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 104
Query: 78  RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSN 122
             C N+PI+L GNK D++  +   +++   +++ ++               Y E SAK+ 
Sbjct: 105 HFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTK 164
Query: 123 YNFEKPFLYLAR 134
               + F    R
Sbjct: 165 EGVREVFEMATR 176

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Query: 33  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGN 90
           DTAG E+F  +RD Y  +GQ  I+++ +  + +++++      + RV   E +P++L GN
Sbjct: 57  DTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGN 116
Query: 91  KVDVKNRQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           KVD+++ +  +         +    + E SAKS    ++ F  + R++
Sbjct: 117 KVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 14/121 (11%)
Query: 23  NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCE 81
           N   +    WDTAGQE +  LR   Y      I+ F + ++ +Y+NV   W  +L     
Sbjct: 52  NGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP 111
Query: 82  NIPIVLCGNKVDVKNRQ---------VKAKQVTFHRKKNL----QYYEISAKSNYNFEKP 128
            +PIVL G K+D+++ +         V    V     K L     Y E S+KS  N +  
Sbjct: 112 GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGV 171
Query: 129 F 129
           F
Sbjct: 172 F 172

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           WDTAGQE +  LR   Y     ++I F + +  +++NV   W+ ++   C N PI+L G 
Sbjct: 58  WDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 117
Query: 91  KVDVKN-----RQVKAKQVT 105
           K+D+++      ++K K++T
Sbjct: 118 KLDLRDDKDTIEKLKEKKLT 137

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           WDTAGQE +  LR   Y     ++I F + +  +++NV   W+ ++   C N PI+L G 
Sbjct: 56  WDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 115
Query: 91  KVDVKN-----RQVKAKQVT 105
           K+D+++      ++K K++T
Sbjct: 116 KLDLRDDKDTIEKLKEKKLT 135

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           WDTAGQE +  LR   Y     ++I F + +  +++NV   W+ ++   C N PI+L G 
Sbjct: 60  WDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 119
Query: 91  KVDVKN-----RQVKAKQVT 105
           K+D+++      ++K K++T
Sbjct: 120 KLDLRDDKDTIEKLKEKKLT 139

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           WDTAGQE +  LR   Y     ++I F + +  +++NV   W+ ++   C N PI+L G 
Sbjct: 56  WDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 115
Query: 91  KVDVKN-----RQVKAKQVT 105
           K+D+++      ++K K++T
Sbjct: 116 KLDLRDDKDTIEKLKEKKLT 135

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 14/117 (11%)
Query: 27  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPI 85
           +    WDTAGQE +  LR   Y      ++ F + ++ +Y+N+   W  +L      IPI
Sbjct: 54  VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPI 113
Query: 86  VLCGNKVDVKNRQV------KAKQVTFHRKKNL-------QYYEISAKSNYNFEKPF 129
           VL G K+D+++ +        A  +T  + + L       +Y E S+K+  N +  F
Sbjct: 114 VLVGTKLDLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 19  DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLC 77
           D   +  ++    WDTAGQE +  LR   Y      ++ F V +  + +N+P  W  ++ 
Sbjct: 65  DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK 124
Query: 78  RVCENIPIVLCGNKVDVKN 96
             C N+PI+L  NK D+++
Sbjct: 125 HFCPNVPIILVANKKDLRS 143

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 14/117 (11%)
Query: 27  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPI 85
           +    WDTAGQE +  LR   Y      I+ F + ++ +Y+NV   W  +L      +PI
Sbjct: 54  VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPI 113
Query: 86  VLCGNKVDVKNRQV------KAKQVTFHRKKNLQ-------YYEISAKSNYNFEKPF 129
           +L G K+D+++ +        A  +T ++ + L+       Y E S+K+  N +  F
Sbjct: 114 ILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVF 170

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           WDTAGQE +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G 
Sbjct: 56  WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 115
Query: 91  KVDVKN-----RQVKAKQVT 105
           K+D+++      ++K K++T
Sbjct: 116 KLDLRDDKDTIEKLKEKKLT 135

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           WDTAGQE +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G 
Sbjct: 56  WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 115
Query: 91  KVDVKN-----RQVKAKQVT 105
           K+D+++      ++K K++T
Sbjct: 116 KLDLRDDKDTIEKLKEKKLT 135

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           WDTAGQE +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G 
Sbjct: 56  WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 115
Query: 91  KVDVKN-----RQVKAKQVT 105
           K+D+++      ++K K++T
Sbjct: 116 KLDLRDDKDTIEKLKEKKLT 135

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           WDTAGQE +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G 
Sbjct: 56  WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 115
Query: 91  KVDVKN-----RQVKAKQVT 105
           K+D+++      ++K K++T
Sbjct: 116 KLDLRDDKDTIEKLKEKKLT 135

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           WDTAGQE +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G 
Sbjct: 56  WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 115
Query: 91  KVDVKN-----RQVKAKQVT 105
           K+D+++      ++K K++T
Sbjct: 116 KLDLRDDKDTIEKLKEKKLT 135

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           WDTAGQE +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G 
Sbjct: 75  WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 134
Query: 91  KVDVKN-----RQVKAKQVT 105
           K+D+++      ++K K++T
Sbjct: 135 KLDLRDDKDTIEKLKEKKLT 154

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 27  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPI 85
           +    WDTAGQE +  LR   Y      +I F + +  +++NV   W+ ++   C N PI
Sbjct: 58  VNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI 117
Query: 86  VLCGNKVDVKN-----RQVKAKQVT 105
           +L G K+D+++      ++K K++T
Sbjct: 118 ILVGTKLDLRDDKDTIEKLKEKKLT 142

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           WDTAGQE +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G 
Sbjct: 56  WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 115
Query: 91  KVDVKN-----RQVKAKQVT 105
           K+D+++      ++K K++T
Sbjct: 116 KLDLRDDKDTIEKLKEKKLT 135

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           WDTAGQE +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G 
Sbjct: 66  WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 125
Query: 91  KVDVKN-----RQVKAKQVT 105
           K+D+++      ++K K++T
Sbjct: 126 KLDLRDDKDTIEKLKEKKLT 145

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 27  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPI 85
           +    WDTAGQE +  LR   Y      +I F + +  +++NV   W+ ++   C N PI
Sbjct: 78  VNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI 137
Query: 86  VLCGNKVDVKN-----RQVKAKQVT 105
           +L G K+D+++      ++K K++T
Sbjct: 138 ILVGTKLDLRDDKDTIEKLKEKKLT 162

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 27  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPI 85
           +    WDTAGQE +  LR   Y      +I F + +  +++NV   W+ ++   C N PI
Sbjct: 78  VNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI 137
Query: 86  VLCGNKVDVKN-----RQVKAKQVT 105
           +L G K+D+++      ++K K++T
Sbjct: 138 ILVGTKLDLRDDKDTIEKLKEKKLT 162

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 33  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCG 89
           DT G  +F  ++      G   I+++ +T+R + + +   +  +C +    E+IPI+L G
Sbjct: 57  DTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVG 116
Query: 90  NKVDVK-NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL 132
           NK D   +R+V++ +     R     + E SAK N+N ++ F  L
Sbjct: 117 NKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL 161

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 16/132 (12%)
Query: 19  DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLC 77
           D   +  ++    WDTAGQE +  LR   Y      ++ F + +  + +N+P  W  ++ 
Sbjct: 65  DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 124
Query: 78  RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---------------YYEISAKSN 122
               N+PI+L GNK D++  +   +++   +++ ++               Y E SAK+ 
Sbjct: 125 HFXPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTK 184
Query: 123 YNFEKPFLYLAR 134
               + F    R
Sbjct: 185 EGVREVFEMATR 196

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Query: 33  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCG 89
           DT G  +F  ++      G   I++F VT++ + + +   ++ + ++    E+IP++L G
Sbjct: 62  DTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVG 121
Query: 90  NKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL 132
           NK D   R+V  ++     ++    + E SAK NYN ++ F  L
Sbjct: 122 NKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQEL 165

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           WDTAGQE +  LR   Y      +I F + +  +Y+NV   W  ++   C + PI+L G 
Sbjct: 56  WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGT 115
Query: 91  KVDVKN 96
           K+D+++
Sbjct: 116 KLDLRD 121

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 17/143 (11%)
Query: 8   KATIGVEVHPLDFF----TNCGK--IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT 61
           K TIG     LDFF    T  G   +    WD  GQ   G + D Y    Q  ++++D+T
Sbjct: 36  KQTIG-----LDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDIT 90
Query: 62  ARLTYKNVPTWHRDLCRVCENI---PIV-LCGNKVDVKN-RQVK-AKQVTFHRKKNLQYY 115
              +++N+  W+  + +V E     P+V L GNK+D+++ R +K  K + F ++     +
Sbjct: 91  NYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSH 150
Query: 116 EISAKSNYNFEKPFLYLARKLAG 138
            +SAK+  +    F  +A ++ G
Sbjct: 151 FVSAKTGDSVFLCFQKVAAEILG 173

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 27  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPI 85
           +    WDTAGQE +  LR   Y      +I F + +  +Y+NV   W  ++   C + PI
Sbjct: 58  VNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPI 117
Query: 86  VLCGNKVDVKN 96
           +L G K+D+++
Sbjct: 118 ILVGTKLDLRD 128

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           WDTAGQE +  LR   Y      +I F + +  +Y+NV   W  ++   C + PI+L G 
Sbjct: 62  WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGT 121
Query: 91  KVDVKN 96
           K+D+++
Sbjct: 122 KLDLRD 127

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 16/123 (13%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           WDTAGQE +  LR   Y      +I F + +  +++NV   W+ ++   C + PI+L G 
Sbjct: 57  WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGT 116
Query: 91  KVDVKN--------RQVKAKQVTFHRK-------KNLQYYEISAKSNYNFEKPFLYLARK 135
           K+D+++        R  K   +T+ +         +++Y E SA +    +  F    R 
Sbjct: 117 KLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRA 176
Query: 136 LAG 138
           + G
Sbjct: 177 VLG 179

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           WDTAG E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G 
Sbjct: 56  WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 115
Query: 91  KVDVKN-----RQVKAKQVT 105
           K+D+++      ++K K++T
Sbjct: 116 KLDLRDDKDTIEKLKEKKLT 135

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 16/123 (13%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           WDTAGQE +  LR   Y      +I F + +  +++NV   W+ ++   C + PI+L G 
Sbjct: 57  WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGT 116
Query: 91  KVDVKN--------RQVKAKQVTFHRK-------KNLQYYEISAKSNYNFEKPFLYLARK 135
           K+D+++        R  K   +T+ +         +++Y E SA +    +  F    R 
Sbjct: 117 KLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRA 176
Query: 136 LAG 138
           + G
Sbjct: 177 VLG 179

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           WDTAG E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G 
Sbjct: 59  WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 118
Query: 91  KVDVKN-----RQVKAKQVT 105
           K+D+++      ++K K++T
Sbjct: 119 KLDLRDDKDTIEKLKEKKLT 138

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           WDTAG E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G 
Sbjct: 56  WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 115
Query: 91  KVDVKN-----RQVKAKQVT 105
           K+D+++      ++K K++T
Sbjct: 116 KLDLRDDKDTIEKLKEKKLT 135

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           WDTAG E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G 
Sbjct: 83  WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 142
Query: 91  KVDVKN-----RQVKAKQVT 105
           K+D+++      ++K K++T
Sbjct: 143 KLDLRDDKDTIEKLKEKKLT 162

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           WDTAGQE +  LR   Y      +I F + +  +++NV   W+ ++   C + PI+L G 
Sbjct: 56  WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGT 115
Query: 91  KVDVKN 96
           K+D+++
Sbjct: 116 KLDLRD 121

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 29  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVL 87
            + WDTAGQE++  LR   Y      ++ F V  R ++ N+ T W  ++    +    VL
Sbjct: 73  LHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVL 132
Query: 88  CGNKVDVK 95
            G KVD++
Sbjct: 133 VGLKVDLR 140

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 29  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVL 87
            + WDTAGQE++  LR   Y      ++ F V  R ++ N+ T W  ++    +    VL
Sbjct: 72  LHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVL 131
Query: 88  CGNKVDVK 95
            G KVD++
Sbjct: 132 VGLKVDLR 139

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 27  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPI 85
           +    WDTAG E +  LR   Y      +I F + +  ++ +V   W+ ++   C N PI
Sbjct: 203 VNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPI 262
Query: 86  VLCGNKVDVKN-----RQVKAKQVT 105
           +L G K+D+++      ++K K++T
Sbjct: 263 ILVGTKLDLRDDKDTIEKLKEKKLT 287

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 27  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPI 85
           +    WDTAG E +  LR   Y      +I F + +  ++ +V   W+ ++   C N PI
Sbjct: 203 VNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPI 262
Query: 86  VLCGNKVDVKN-----RQVKAKQVT 105
           +L G K+D+++      ++K K++T
Sbjct: 263 ILVGTKLDLRDDKDTIEKLKEKKLT 287

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 27  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPI 85
           +    WDTAG E +  LR   Y      +I F + +  ++ +V   W+ ++   C N PI
Sbjct: 203 VNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPI 262
Query: 86  VLCGNKVDVKN-----RQVKAKQVT 105
           +L G K+D+++      ++K K++T
Sbjct: 263 ILVGTKLDLRDDKDTIEKLKEKKLT 287

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Query: 14  EVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTW 72
           E +   F  +  +I    WDT+G   +  +R   Y      +I FD++   T  +V   W
Sbjct: 63  ENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKW 122
Query: 73  HRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQY 114
             ++   C N  ++L G K D++       +++ HR+  + Y
Sbjct: 123 KGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSY 164

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Query: 14  EVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTW 72
           E +   F  +  +I    WDT+G   +  +R   Y      +I FD++   T  +V   W
Sbjct: 58  ENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKW 117
Query: 73  HRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQY 114
             ++   C N  ++L G K D++       +++ HR+  + Y
Sbjct: 118 KGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSY 159

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Query: 14  EVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTW 72
           E +   F  +  +I    WDT+G   +  +R   Y      +I FD++   T  +V   W
Sbjct: 42  ENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKW 101
Query: 73  HRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQY 114
             ++   C N  ++L G K D++       +++ HR+  + Y
Sbjct: 102 KGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSY 143

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 14/114 (12%)
Query: 31  CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLC 88
            W+  G+ ++  L D     G   +I++ +T R +++        L   R  E+IPI+L 
Sbjct: 63  MWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILV 120
Query: 89  GNKVD-VKNRQV-----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           GNK D V+ R+V     +A  V F    + ++ E SA   +N ++ F  + R++
Sbjct: 121 GNKSDLVRXREVSVSEGRAXAVVF----DCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 14/114 (12%)
Query: 31  CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLC 88
            W+  G+ ++  L D     G   +I++ +T R +++        L   R  E+IPI+L 
Sbjct: 63  MWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILV 120
Query: 89  GNKVD-VKNRQV-----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           GNK D V+ R+V     +A  V F  K    + E SA   +N ++ F  + R++
Sbjct: 121 GNKSDLVRXREVSVSEGRAXAVVFDXK----FIETSAAVQHNVKELFEGIVRQV 170

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           +DTAGQE +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G 
Sbjct: 66  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 125
Query: 91  KVDVKNRQVKAKQVTFHRKKNL 112
           ++D+++     +++  +++K +
Sbjct: 126 QIDLRDDPSTIEKLAKNKQKPI 147

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           +DTAGQE +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G 
Sbjct: 56  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 91  KVDVKNRQVKAKQVTFHRKKNL 112
           ++D+++     +++  +++K +
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPI 137

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           +DTAGQE +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G 
Sbjct: 59  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 118
Query: 91  KVDVKNRQVKAKQVTFHRKKNL 112
           ++D+++     +++  +++K +
Sbjct: 119 QIDLRDDPSTIEKLAKNKQKPI 140

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           +DTAGQE +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G 
Sbjct: 63  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 122
Query: 91  KVDVKNRQVKAKQVTFHRKKNL 112
           ++D+++     +++  +++K +
Sbjct: 123 QIDLRDDPSTIEKLAKNKQKPI 144

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           +DTAGQE +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G 
Sbjct: 56  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 91  KVDVKNRQVKAKQVTFHRKKNL 112
           ++D+++     +++  +++K +
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPI 137

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           +DTAGQE +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G 
Sbjct: 63  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 122
Query: 91  KVDVKNRQVKAKQVTFHRKKNL 112
           ++D+++     +++  +++K +
Sbjct: 123 QIDLRDDPSTIEKLAKNKQKPI 144

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 16/119 (13%)
Query: 27  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPI 85
           +R    DTAGQ++F  LR   Y +    ++ F V +  +++NV   W  ++   C   PI
Sbjct: 68  VRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPI 127
Query: 86  VLCGNKVDV-------------KNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 129
           +L G + D+             K + V  +A ++     K   Y E SA +  N ++ F
Sbjct: 128 ILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           +DTAGQE +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G 
Sbjct: 56  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 91  KVDVKNRQVKAKQVTFHRKKNL 112
           ++D+++     +++  +++K +
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPI 137

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           +DTAGQE +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G 
Sbjct: 58  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 117
Query: 91  KVDVKNRQVKAKQVTFHRKKNL 112
           ++D+++     +++  +++K +
Sbjct: 118 QIDLRDDPSTIEKLAKNKQKPI 139

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           +DTAGQE +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G 
Sbjct: 56  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 91  KVDVKNRQVKAKQVTFHRKKNL 112
           ++D+++     +++  +++K +
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPI 137

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           +DTAGQE +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G 
Sbjct: 56  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 91  KVDVKNRQVKAKQVTFHRKKNL 112
           ++D+++     +++  +++K +
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPI 137

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           +DTAGQE +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G 
Sbjct: 57  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 116
Query: 91  KVDVKNRQVKAKQVTFHRKKNL 112
           ++D+++     +++  +++K +
Sbjct: 117 QIDLRDDPSTIEKLAKNKQKPI 138

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           +DTAGQE +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G 
Sbjct: 56  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 91  KVDVKNRQVKAKQVTFHRKKNL 112
           ++D+++     +++  +++K +
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPI 137

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           +DTAGQE +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G 
Sbjct: 56  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 91  KVDVKNRQVKAKQVTFHRKKNL 112
           ++D+++     +++  +++K +
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPI 137

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           +DTAGQE +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G 
Sbjct: 59  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 118
Query: 91  KVDVKNRQVKAKQVTFHRKKNL 112
           ++D+++     +++  +++K +
Sbjct: 119 QIDLRDDPSTIEKLAKNKQKPI 140

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           +DTAGQE +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G 
Sbjct: 60  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 119
Query: 91  KVDVKNRQVKAKQVTFHRKKNL 112
           ++D+++     +++  +++K +
Sbjct: 120 QIDLRDDPSTIEKLAKNKQKPI 141

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           +DTAGQE +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G 
Sbjct: 56  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 91  KVDVKNRQVKAKQVTFHRKKNL 112
           ++D+++     +++  +++K +
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPI 137

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           +DTAGQE +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G 
Sbjct: 56  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 91  KVDVKNRQVKAKQVTFHRKKNL 112
           ++D+++     +++  +++K +
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPI 137

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           +DTAGQE +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G 
Sbjct: 56  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 91  KVDVKNRQVKAKQVTFHRKKNL 112
           ++D+++     +++  +++K +
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPI 137

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           +DTAGQE +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G 
Sbjct: 56  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 91  KVDVKNRQVKAKQVTFHRKK 110
           ++D+++     +++  +++K
Sbjct: 116 QIDLRDDPSTIEKLAKNKQK 135

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN 90
           +DTAGQE +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G 
Sbjct: 58  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 117
Query: 91  KVDVKNRQVKAKQVTFHRKKNL 112
           ++D+++     +++  +++K +
Sbjct: 118 QIDLRDDPSTIEKLAKNKQKPI 139

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 39.7 bits (91), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 13/120 (10%)
Query: 26  KIRFYCWDTAGQEKFGG-LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCEN 82
           ++    +D   Q   GG LRD     G   +I+F VT R ++  VP     L   R   +
Sbjct: 71  EVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHD 130
Query: 83  IPIVLCGNKVDVKNRQVKAKQVTFHRKKNL------QYYEISAKSNYNFEKPFLYLARKL 136
           +P++L GNK D+     ++++V+    ++L      ++ E SA  ++N  + F    R++
Sbjct: 131 LPVILVGNKSDL----ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	186
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	1e-106
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	3e-91
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	3e-35
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	3e-34
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	3e-34
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	7e-33
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	1e-32
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	1e-32
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	3e-32
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	8e-32
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	1e-31
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	2e-31
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	2e-31
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	2e-31
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	3e-31
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	3e-31
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	5e-31
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	7e-31
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	7e-31
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	8e-31
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	9e-31
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	1e-30
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	1e-30
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	1e-30
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	1e-30
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	1e-30
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	2e-30
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	2e-30
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	3e-30
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	3e-30
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	4e-30
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	4e-30
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	6e-30
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	6e-30
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	8e-30
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	1e-29
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	1e-29
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	1e-29
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	1e-29
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	1e-29
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	2e-29
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	2e-29
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	2e-29
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	2e-29
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	2e-29
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	2e-29
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	2e-29
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	2e-29
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	3e-29
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	5e-29
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	6e-29
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	6e-29
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	8e-29
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	8e-29
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	8e-29
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-28
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	1e-28
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	2e-28
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	2e-28
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	5e-28
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	1e-27
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	4e-27
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	2e-26
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	3e-26
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	1e-25
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	5e-25
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	1e-23
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	4e-23
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	7e-23
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	3e-22
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	3e-21
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	1e-19
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	4e-19
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	4e-18
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	6e-17
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	6e-17
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	7e-17
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	1e-16
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	2e-16
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	3e-16
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	4e-16
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	9e-16
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	2e-15
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	2e-14
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	1e-13
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	5e-11
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	5e-08
3llu_A	196	RAS-related GTP-binding protein C; structural geno	3e-06
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	8e-04

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  301 bits (774), Expect = e-106
 Identities = 133/176 (75%), Positives = 148/176 (84%)

Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
            AT+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYK
Sbjct: 45  VATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYK 104

Query: 68  NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 127
           NVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEK
Sbjct: 105 NVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEK 164

Query: 128 PFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDD 183
           PFL+LARKL GDPNL FV  PALAPPEV +D A   Q+E +L  A +  LPD+DDD
Sbjct: 165 PFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 220

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  264 bits (677), Expect = 3e-91
 Identities = 74/178 (41%), Positives = 108/178 (60%), Gaps = 5/178 (2%)

Query: 8   KATIGVEVHPLDFFTNCGK-IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTY 66
            AT+G   HP+ F  + G  I+F  WDTAGQEK   L+D YYI    AI+ FDVT+R+T 
Sbjct: 41  NATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITC 100

Query: 67  KNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFH--RKKNLQYYEISAKSNY 123
           +N+  W ++   V     PIV+C NK+D+KNRQ  +K++     + KN +Y+EISAK+ +
Sbjct: 101 QNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAH 160

Query: 124 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEA-ELAAAASQPLPDD 180
           NF  PFL+LAR   G P+L FV +  L P EV  D  + ++ +  +    AS+  P++
Sbjct: 161 NFGLPFLHLARIFTGRPDLIFVSNVNLEPTEVNYDYHSPEESKYIDYMEQASKMAPEE 218

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  121 bits (307), Expect = 3e-35
 Identities = 53/141 (37%), Positives = 74/141 (52%), Gaps = 17/141 (12%)

Query: 8   KATIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 62
           KATIG      DF T     +   +    WDTAGQE+F  L   +Y    C +++FDVTA
Sbjct: 38  KATIGA-----DFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTA 92

Query: 63  RLTYKNVPTWHRDL-----CRVCENIPIVLCGNKVDVKNRQVKAKQVT--FHRKKNLQYY 115
             T+K + +W  +       R  EN P V+ GNK+D++NRQV  K+     + K N+ Y+
Sbjct: 93  PNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYF 152

Query: 116 EISAKSNYNFEKPFLYLARKL 136
           E SAK   N E+ F  +AR  
Sbjct: 153 ETSAKEAINVEQAFQTIARNA 173

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  118 bits (297), Expect = 3e-34
 Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 17/141 (12%)

Query: 8   KATIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 62
             TIGV     +F       +   +    WDTAGQE+F  LR  +Y    C ++ F V  
Sbjct: 37  FHTIGV-----EFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDD 91

Query: 63  RLTYKNVPTWHRDL-----CRVCENIPIVLCGNKVDVKNRQVKAKQVT--FHRKKNLQYY 115
             +++N+  W ++       +  E+ P V+ GNK+D+  RQV  ++         +  Y+
Sbjct: 92  SQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYF 151

Query: 116 EISAKSNYNFEKPFLYLARKL 136
           E SAK   N    F    R++
Sbjct: 152 ETSAKDATNVAAAFEEAVRRV 172

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  117 bits (297), Expect = 3e-34
 Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 12/136 (8%)

Query: 8   KATIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 62
           K TIGV     DF       N   +R   WDTAGQE+F  +   YY   Q  +++F  T 
Sbjct: 35  KKTIGV-----DFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTD 89

Query: 63  RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAK 120
           R +++ + +W   +     +IP  L  NK+D+ +   +K ++     ++  L++Y  S K
Sbjct: 90  RESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVK 149

Query: 121 SNYNFEKPFLYLARKL 136
            + N  + F YLA K 
Sbjct: 150 EDLNVSEVFKYLAEKH 165

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  114 bits (288), Expect = 7e-33
 Identities = 33/107 (30%), Positives = 58/107 (54%), Gaps = 3/107 (2%)

Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115

Query: 90  NKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARK 135
           NK D+  R V+++Q     R   + Y E SAK+    E  F  L R+
Sbjct: 116 NKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  114 bits (288), Expect = 1e-32
 Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 3/108 (2%)

Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   E++P+VL G
Sbjct: 57  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 116

Query: 90  NKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+ +R V  KQ     R   + + E SAK+    +  F  L R++
Sbjct: 117 NKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  114 bits (287), Expect = 1e-32
 Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 20/144 (13%)

Query: 8   KATIGVEVHPLDFFT-----NCGK-IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT 61
           KATIG      DF T     +  K      WDTAGQE+F  L   +Y    C ++++DVT
Sbjct: 38  KATIGA-----DFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVT 92

Query: 62  ARLTYKNVPTWHRDL-----CRVCENIPIVLCGNKVDVK--NRQVKAKQV-TFHRKK-NL 112
              +++N+ +W  +          E  P V+ GNK+D +   + V  K      +   ++
Sbjct: 93  NASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDI 152

Query: 113 QYYEISAKSNYNFEKPFLYLARKL 136
             +  SAK+  N +  F  +AR  
Sbjct: 153 PLFLTSAKNAINVDTAFEEIARSA 176

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  113 bits (286), Expect = 3e-32
 Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 3/107 (2%)

Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAGQE++  +RD Y   G+  + +F +    ++ ++  +   + RV   +++P+VL G
Sbjct: 74  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVG 133

Query: 90  NKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 135
           NK D+  R V  KQ     +   + + E SAK+    E  F  L R+
Sbjct: 134 NKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVRE 180

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  112 bits (282), Expect = 8e-32
 Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 21/143 (14%)

Query: 8   KATIGVEVHPLDFFT------NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT 61
           K TIG+     DFF           +    WD  GQ   G + D Y    Q  ++++D+T
Sbjct: 36  KQTIGL-----DFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDIT 90

Query: 62  ARLTYKNVPTWHRDLCRVCE----NIPIVLCGNKVDVKN-RQV---KAKQVTFHRKKNLQ 113
              +++N+  W+  + +V E       + L GNK+D+++ R +   K  +  F ++    
Sbjct: 91  NYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLR--FCQENGFS 148

Query: 114 YYEISAKSNYNFEKPFLYLARKL 136
            + +SAK+  +    F  +A ++
Sbjct: 149 SHFVSAKTGDSVFLCFQKVAAEI 171

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  111 bits (281), Expect = 1e-31
 Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 4/109 (3%)

Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAGQE+FG +R+ Y   G   +++F +  R ++  V      + RV   ++ P+VL G
Sbjct: 62  LDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVG 121

Query: 90  NKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+++ RQV   +   F    ++ Y+E SAK   N ++ F  L R +
Sbjct: 122 NKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  111 bits (279), Expect = 2e-31
 Identities = 36/107 (33%), Positives = 58/107 (54%), Gaps = 4/107 (3%)

Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAGQE +  +RD Y+  G+  + +F +T   ++     +   + RV   EN+P +L G
Sbjct: 57  LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 116

Query: 90  NKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 134
           NK D+++ RQV  ++      + N+ Y E SAK+  N +K F  L R
Sbjct: 117 NKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMR 163

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  111 bits (280), Expect = 2e-31
 Identities = 28/107 (26%), Positives = 54/107 (50%), Gaps = 4/107 (3%)

Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLC 88
            DT G  +F  ++      G   I++F VT++ + + +   ++ + ++    E+IP++L 
Sbjct: 61  TDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLV 120

Query: 89  GNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 134
           GNK D   R+V  ++     ++    + E SAK NYN ++ F  L  
Sbjct: 121 GNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLT 167

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  110 bits (278), Expect = 2e-31
 Identities = 42/136 (30%), Positives = 68/136 (50%), Gaps = 12/136 (8%)

Query: 8   KATIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 62
             TIGV     DF       N  K++   WDTAGQE+F  +   YY      I+++DVT+
Sbjct: 39  ITTIGV-----DFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTS 93

Query: 63  RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAK 120
             ++ NV  W  ++ + C+++  +L GNK D    + V+ +    F  +  +Q +E SAK
Sbjct: 94  AESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAK 153

Query: 121 SNYNFEKPFLYLARKL 136
            N N E+ F  +   +
Sbjct: 154 ENVNVEEMFNCITELV 169

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  110 bits (278), Expect = 3e-31
 Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 4/109 (3%)

Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAGQ+++      Y I     I+++ VT+  +++ +   H  L  +     IPI+L G
Sbjct: 59  VDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVG 118

Query: 90  NKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D    R +  ++        N  + E SAK N      F  +  + 
Sbjct: 119 NKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 167

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  110 bits (278), Expect = 3e-31
 Identities = 36/107 (33%), Positives = 58/107 (54%), Gaps = 4/107 (3%)

Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAGQE +  +RD Y+  G+  + +F +T   ++     +   + RV   EN+P +L G
Sbjct: 71  LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 130

Query: 90  NKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 134
           NK D+++ RQV  ++      + N+ Y E SAK+  N +K F  L R
Sbjct: 131 NKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMR 177

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  109 bits (276), Expect = 5e-31
 Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 5/108 (4%)

Query: 32  WDTAGQEKFGG-LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLC 88
           +D   Q   GG L+D     G   +I+F VT R ++  VP     L       ++P++L 
Sbjct: 56  YDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILV 115

Query: 89  GNKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 134
           GNK D  ++R+V  ++        + ++ E SA  ++N  + F    R
Sbjct: 116 GNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVR 163

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  109 bits (275), Expect = 7e-31
 Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 12/136 (8%)

Query: 8   KATIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 62
             TIG+     DF       N  K++   WDTAGQE+F  +   YY      I+++D+T 
Sbjct: 33  ITTIGI-----DFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITD 87

Query: 63  RLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAK 120
             T+ N+  W + +     +   ++L GNK D++ R V A Q     ++  + + E SAK
Sbjct: 88  ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAK 147

Query: 121 SNYNFEKPFLYLARKL 136
           ++ N  + F  LA+ +
Sbjct: 148 NDDNVNEIFFTLAKLI 163

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  109 bits (275), Expect = 7e-31
 Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 13/139 (9%)

Query: 8   KATIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 62
           +ATIG+     DF +         +R   WDTAGQE+F  L   Y      A++++D+T 
Sbjct: 44  QATIGI-----DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 98

Query: 63  RLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISA 119
             ++     W  D+      ++ I+L GNK D+ + RQV  ++     ++ N+ + E SA
Sbjct: 99  TNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSA 158

Query: 120 KSNYNFEKPFLYLARKLAG 138
           K+ YN ++ F  +A  L G
Sbjct: 159 KAGYNVKQLFRRVAAALPG 177

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  109 bits (274), Expect = 8e-31
 Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 4/107 (3%)

Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
           +D   Q+    L       G   +I++ VT + +++        L R    +++PI+L G
Sbjct: 54  YDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVG 113

Query: 90  NKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 134
           NK D V++R+V   +        + ++ E SA  ++N +  F  + R
Sbjct: 114 NKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR 160

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  109 bits (274), Expect = 9e-31
 Identities = 31/107 (28%), Positives = 59/107 (55%), Gaps = 4/107 (3%)

Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAG E+F  +RD Y  +GQ  I+++ +  + +++++      + RV   E +P++L G
Sbjct: 56  LDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVG 115

Query: 90  NKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 134
           NKVD+++ R+V + +      +    + E SAKS    ++ F  + R
Sbjct: 116 NKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVR 162

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  110 bits (276), Expect = 1e-30
 Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 2/131 (1%)

Query: 7   GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTY 66
               + +     ++  N   I+F  WDTAGQE++  +   YY    CAI++FD++   T 
Sbjct: 73  DDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTL 132

Query: 67  KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNF 125
               TW   L ++  N  I+L  NK+D    QV   +V  + +  NL + + SAK+  N 
Sbjct: 133 DRAKTWVNQL-KISSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNI 191

Query: 126 EKPFLYLARKL 136
           +  F  LA ++
Sbjct: 192 KNIFYMLAEEI 202

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  110 bits (276), Expect = 1e-30
 Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 17/168 (10%)

Query: 8   KATIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 62
           +ATIG+     DF +         +R   WDTAG E+F  L   Y      A++++D+T 
Sbjct: 46  QATIGI-----DFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITN 100

Query: 63  RLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISA 119
             +++    W  D+      ++ I+L GNK D+ + RQV  ++     ++ N+ + E SA
Sbjct: 101 VNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSA 160

Query: 120 KSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEA 167
           K+ YN ++ F  +A  L G  +             + I L   Q+   
Sbjct: 161 KAGYNVKQLFRRVAAALPGMES----TQDRSREDMIDIKLEKPQEQPV 204

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  109 bits (275), Expect = 1e-30
 Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 14/143 (9%)

Query: 8   KATIGVE---------VHPLDFFTNCGK-IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 57
             T+G++          +  D     G+ I    WDTAG E+F  L   ++      +++
Sbjct: 41  ITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLL 100

Query: 58  FDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQ 113
           FD+T   ++ NV  W   L      EN  IVLCGNK D+++ R VK ++      K  + 
Sbjct: 101 FDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIP 160

Query: 114 YYEISAKSNYNFEKPFLYLARKL 136
           Y+E SA +  N       L   +
Sbjct: 161 YFETSAANGTNISHAIEMLLDLI 183

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  110 bits (276), Expect = 1e-30
 Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 12/136 (8%)

Query: 8   KATIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 62
             TIG+     DF       N  K++   WDTAGQE+F  +   YY      I+++DVT 
Sbjct: 50  ITTIGI-----DFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTD 104

Query: 63  RLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAK 120
             T+ N+  W + +     +   ++L GNK D++ R V A Q     ++  + + E SAK
Sbjct: 105 ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAK 164

Query: 121 SNYNFEKPFLYLARKL 136
           ++ N  + F  LA+ +
Sbjct: 165 NDDNVNEIFFTLAKLI 180

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  109 bits (275), Expect = 1e-30
 Identities = 25/109 (22%), Positives = 54/109 (49%), Gaps = 4/109 (3%)

Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAGQ+++  L   + I     ++++ VT+  +++ + + ++ L        +P+VL G
Sbjct: 77  VDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVG 136

Query: 90  NKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           NK D+   R+V+A +           + E SA+ N   +  F  + +++
Sbjct: 137 NKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  108 bits (272), Expect = 2e-30
 Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 5/108 (4%)

Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLC 88
            DT G  +F  ++      G   I+++ +T+R + + +   +  +C +    E+IPI+L 
Sbjct: 56  TDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLV 115

Query: 89  GNKVD-VKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 134
           GNK D   +R+V++ +     R     + E SAK N+N ++ F  L  
Sbjct: 116 GNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLN 163

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  109 bits (274), Expect = 2e-30
 Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 4/107 (3%)

Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAGQE +  +RD Y+  G+  + +F +T   ++     +   + RV   EN+P +L G
Sbjct: 67  LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 126

Query: 90  NKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 134
           NK D    RQV  ++      + N+ Y E SAK+  N +K F  L R
Sbjct: 127 NKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMR 173

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  107 bits (271), Expect = 3e-30
 Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 13/137 (9%)

Query: 8   KATIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 62
             T+G       F T        ++    WDTAGQE+F  L   YY     AI+++D+T 
Sbjct: 36  ITTLGA-----SFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITD 90

Query: 63  RLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISA 119
             +++ V  W ++L ++    I + + GNK+D++  R V  ++  ++      ++Y  SA
Sbjct: 91  EDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSA 150

Query: 120 KSNYNFEKPFLYLARKL 136
           K N   E+ FL L +++
Sbjct: 151 KQNKGIEELFLDLCKRM 167

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  108 bits (272), Expect = 3e-30
 Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 5/108 (4%)

Query: 32  WDTAGQEKFGG-LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLC 88
           +D   Q   GG LRD     G   +I+F VT R ++  VP     L       ++P++L 
Sbjct: 77  YDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILV 136

Query: 89  GNKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 134
           GNK D  ++R+V  ++        + ++ E SA  ++N  + F    R
Sbjct: 137 GNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVR 184

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  108 bits (271), Expect = 4e-30
 Identities = 46/137 (33%), Positives = 75/137 (54%), Gaps = 13/137 (9%)

Query: 8   KATIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 62
           ++TIG       FF+     N   ++F  WDTAGQE++  L   YY     AII+FDVT 
Sbjct: 42  ESTIGA-----AFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTN 96

Query: 63  RLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISA 119
           + +++    W ++L      N+ + L GNK D+ + R+V A+   T+ ++  L + E SA
Sbjct: 97  QASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSA 156

Query: 120 KSNYNFEKPFLYLARKL 136
           K+  N ++ F  +AR+L
Sbjct: 157 KTATNVKEIFYEIARRL 173

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  107 bits (269), Expect = 4e-30
 Identities = 45/137 (32%), Positives = 73/137 (53%), Gaps = 13/137 (9%)

Query: 8   KATIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 62
           ++TIG       F T     +   ++F  WDTAGQE++  L   YY   Q AI+++D+T 
Sbjct: 36  ESTIGA-----AFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN 90

Query: 63  RLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISA 119
             ++     W ++L R    NI I L GNK D+ N R V  ++  ++    +L + E SA
Sbjct: 91  EESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSA 150

Query: 120 KSNYNFEKPFLYLARKL 136
           K++ N  + F+ +A+KL
Sbjct: 151 KTSMNVNEIFMAIAKKL 167

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  108 bits (272), Expect = 6e-30
 Identities = 43/143 (30%), Positives = 65/143 (45%), Gaps = 14/143 (9%)

Query: 8   KATIGVE----------VHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM 57
             T+G++            P        K+    WDTAGQE+F  L   ++      ++M
Sbjct: 55  ITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLM 114

Query: 58  FDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQ 113
           FD+T++ ++ NV  W   L     CEN  IVL GNK D+ + R+V  +Q      K  + 
Sbjct: 115 FDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIP 174

Query: 114 YYEISAKSNYNFEKPFLYLARKL 136
           Y+E SA +  N EK    L   +
Sbjct: 175 YFETSAATGQNVEKAVETLLDLI 197

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  106 bits (268), Expect = 6e-30
 Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 17/139 (12%)

Query: 8   KATIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 62
             TIG       F T          +F  WDTAG E+F  L   YY     AII++D+T 
Sbjct: 36  NPTIGA-----SFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITK 90

Query: 63  RLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVK---AKQVTFHRKKNLQYYEI 117
             T+  +  W R+L +    +I + + GNK D+ + R+V    AK   +    +  + E 
Sbjct: 91  EETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKD--YADSIHAIFVET 148

Query: 118 SAKSNYNFEKPFLYLARKL 136
           SAK+  N  + F+ ++R++
Sbjct: 149 SAKNAININELFIEISRRI 167

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  107 bits (269), Expect = 8e-30
 Identities = 52/153 (33%), Positives = 75/153 (49%), Gaps = 13/153 (8%)

Query: 8   KATIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 62
            ATIGV     DF       +  K +   WDTAGQE+F  L   YY   Q  I+++DVT 
Sbjct: 45  AATIGV-----DFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTR 99

Query: 63  RLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISA 119
           R T+  +  W  +L   C   +I  +L GNK+D +NR+V   + + F RK ++ + E SA
Sbjct: 100 RDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASA 159

Query: 120 KSNYNFEKPFLYLARKLAGDPNLHFVESPALAP 152
           K+    +  F  L  K+   P L   E+    P
Sbjct: 160 KTCDGVQCAFEELVEKIIQTPGLWESENQNSGP 192

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  106 bits (268), Expect = 1e-29
 Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 13/137 (9%)

Query: 8   KATIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 62
           K+TIGV     +F T     +   I+   WDTAG E++  +   YY     A++++D+  
Sbjct: 59  KSTIGV-----EFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAK 113

Query: 63  RLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISA 119
            LTY+NV  W ++L      NI I+L GNK D+++ R V   +   F  K  L + E SA
Sbjct: 114 HLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSA 173

Query: 120 KSNYNFEKPFLYLARKL 136
             + N E  F  +  ++
Sbjct: 174 LDSTNVEAAFQTILTEI 190

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  106 bits (268), Expect = 1e-29
 Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 13/137 (9%)

Query: 8   KATIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 62
             TIG       F T          +F  WDTAGQE+F  L   YY     A+I++D+T 
Sbjct: 53  SPTIGA-----SFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITK 107

Query: 63  RLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISA 119
           + ++  +  W ++L     ENI + + GNK D+ + R+V  K    +         E SA
Sbjct: 108 QDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSA 167

Query: 120 KSNYNFEKPFLYLARKL 136
           K+  N E+ F  ++R++
Sbjct: 168 KNAINIEELFQGISRQI 184

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  106 bits (268), Expect = 1e-29
 Identities = 46/139 (33%), Positives = 73/139 (52%), Gaps = 17/139 (12%)

Query: 8   KATIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 62
             TIGV     +F +         ++   WDTAGQE+F  +   YY     A++++D+T+
Sbjct: 40  NHTIGV-----EFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS 94

Query: 63  RLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVK-NRQVK---AKQVTFHRKKNLQYYEI 117
           R TY  +  W  D   +  +NI I+LCGNK D+  +R+V    A +  F ++  L + E 
Sbjct: 95  RETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASR--FAQENELMFLET 152

Query: 118 SAKSNYNFEKPFLYLARKL 136
           SA +  N E+ F+  ARK+
Sbjct: 153 SALTGENVEEAFVQCARKI 171

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  106 bits (266), Expect = 1e-29
 Identities = 47/137 (34%), Positives = 71/137 (51%), Gaps = 13/137 (9%)

Query: 8   KATIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 62
             TIGV     +F T     +  KI+   WDTAGQE+F  +   YY     A++++D+T 
Sbjct: 45  PHTIGV-----EFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR 99

Query: 63  RLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVK-NRQVKAKQV-TFHRKKNLQYYEISA 119
           R TY ++ +W  D   +   N  I+L GNK D++  R V  ++   F  +  L + E SA
Sbjct: 100 RSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASA 159

Query: 120 KSNYNFEKPFLYLARKL 136
           K+  N E  FL  A+K+
Sbjct: 160 KTGENVEDAFLEAAKKI 176

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  106 bits (267), Expect = 1e-29
 Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 13/137 (9%)

Query: 8   KATIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 62
           + TIGV     +F T         ++   WDTAG E++  +   YY     A+++FD+T 
Sbjct: 55  RTTIGV-----EFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTK 109

Query: 63  RLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISA 119
             TY  V  W ++L       I ++L GNK D+   R+V  ++   F     L + E SA
Sbjct: 110 HQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSA 169

Query: 120 KSNYNFEKPFLYLARKL 136
             + N E  F  + +++
Sbjct: 170 LDSTNVELAFETVLKEI 186

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  106 bits (267), Expect = 2e-29
 Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 13/137 (9%)

Query: 8   KATIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 62
            +T+G+     DF       +  +I+   WDTAGQE++  +   YY      ++M+D+  
Sbjct: 52  VSTVGI-----DFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIAN 106

Query: 63  RLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISA 119
           + ++  V  W   +     +N  ++L GNK D+++ R V A+           +++E SA
Sbjct: 107 QESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASA 166

Query: 120 KSNYNFEKPFLYLARKL 136
           K N N ++ F  L   +
Sbjct: 167 KENINVKQVFERLVDVI 183

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  106 bits (267), Expect = 2e-29
 Identities = 46/137 (33%), Positives = 72/137 (52%), Gaps = 13/137 (9%)

Query: 8   KATIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 62
           K+TIGV     +F T     +   I+   WDTAGQE++  +   YY     A++++D+  
Sbjct: 35  KSTIGV-----EFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAK 89

Query: 63  RLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISA 119
            LTY+NV  W ++L      NI I+L GNK D+++ R V   +   F  K NL + E SA
Sbjct: 90  HLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSA 149

Query: 120 KSNYNFEKPFLYLARKL 136
             + N E+ F  +  ++
Sbjct: 150 LDSTNVEEAFKNILTEI 166

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  106 bits (267), Expect = 2e-29
 Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 13/137 (9%)

Query: 8   KATIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 62
            +T+G+     DF       +  +++   WDTAGQE++  +   YY      I+M+D+T 
Sbjct: 53  VSTVGI-----DFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITN 107

Query: 63  RLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISA 119
             ++  V  W   +     +N  ++L GNK D++  R V  ++      +    ++E SA
Sbjct: 108 EESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASA 167

Query: 120 KSNYNFEKPFLYLARKL 136
           K N +  + F  L   +
Sbjct: 168 KENISVRQAFERLVDAI 184

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  106 bits (267), Expect = 2e-29
 Identities = 47/137 (34%), Positives = 72/137 (52%), Gaps = 13/137 (9%)

Query: 8   KATIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 62
            ATIGV     DF       N  K++   WDTAGQE+F  +   YY      I+ +D+T 
Sbjct: 56  GATIGV-----DFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITC 110

Query: 63  RLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISA 119
             +++ +P W R++ +     +  VL GNK+D+   R+V  ++   F   +++ Y E SA
Sbjct: 111 EESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSA 170

Query: 120 KSNYNFEKPFLYLARKL 136
           K + N EK FL LA +L
Sbjct: 171 KESDNVEKLFLDLACRL 187

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  106 bits (267), Expect = 2e-29
 Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 13/137 (9%)

Query: 8   KATIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 62
             TIGV     +F +         ++   WDTAGQE+F  +   YY     A++++D+T+
Sbjct: 55  NHTIGV-----EFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS 109

Query: 63  RLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVK-NRQVKAKQV-TFHRKKNLQYYEISA 119
           R TY ++  W  D   +   NI ++LCGNK D+   R+V   +   F ++  L + E SA
Sbjct: 110 RETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSA 169

Query: 120 KSNYNFEKPFLYLARKL 136
            +  N E+ FL  AR +
Sbjct: 170 LTGENVEEAFLKCARTI 186

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  106 bits (266), Expect = 2e-29
 Identities = 43/139 (30%), Positives = 73/139 (52%), Gaps = 17/139 (12%)

Query: 8   KATIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 62
             TIGV     +F       +  +I+   WDTAGQE F  +   YY     A++++D+T 
Sbjct: 51  DLTIGV-----EFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR 105

Query: 63  RLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQV---KAKQVTFHRKKNLQYYEI 117
           R T+ ++ +W  D  +    N+ I+L GNK D+++ R V   + +   F R+  L + E 
Sbjct: 106 RETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEA--FAREHGLIFMET 163

Query: 118 SAKSNYNFEKPFLYLARKL 136
           SAK+  N E+ F+  A+++
Sbjct: 164 SAKTACNVEEAFINTAKEI 182

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  105 bits (265), Expect = 2e-29
 Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 13/137 (9%)

Query: 8   KATIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 62
            +T+G+     DF       +  K++   WDTAGQE+F  +   YY      ++++DVT 
Sbjct: 41  ISTVGI-----DFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTN 95

Query: 63  RLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISA 119
           + ++ N+  W  ++      ++ ++L GNKVD  + R VK +      ++  L + E SA
Sbjct: 96  KASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSA 155

Query: 120 KSNYNFEKPFLYLARKL 136
           K+  N +  F  +A++L
Sbjct: 156 KTGLNVDLAFTAIAKEL 172

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  105 bits (265), Expect = 2e-29
 Identities = 39/108 (36%), Positives = 61/108 (56%), Gaps = 5/108 (4%)

Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAGQE+F  +R+ Y   G   +I++ VT + ++++V  +H+ + RV   E+ P++L  
Sbjct: 71  LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA 130

Query: 90  NKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSN-YNFEKPFLYLAR 134
           NKVD+ + R+V   Q      K N+ Y E SAK    N +K F  L R
Sbjct: 131 NKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  105 bits (264), Expect = 3e-29
 Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 6/109 (5%)

Query: 32  WDTAGQEKFGG--LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVL 87
            DT   EK      ++     G   +I++ +  R ++++       L R    +++PI+L
Sbjct: 57  VDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIIL 116

Query: 88  CGNKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 134
            GNK D  + R+V  ++        + ++ E SA   +N  + F  + R
Sbjct: 117 VGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVR 165

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  105 bits (264), Expect = 5e-29
 Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 13/137 (9%)

Query: 8   KATIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 62
            +TIGV     DF       +   I+   WDTAGQE+F  +   YY      I+++DVT 
Sbjct: 63  ISTIGV-----DFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD 117

Query: 63  RLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISA 119
           + ++ NV  W +++ R   EN+  +L GNK D+   + V       F     + + E SA
Sbjct: 118 QESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSA 177

Query: 120 KSNYNFEKPFLYLARKL 136
           K+  N E+ F+ +A ++
Sbjct: 178 KNATNVEQSFMTMAAEI 194

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  105 bits (264), Expect = 6e-29
 Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 13/137 (9%)

Query: 8   KATIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 62
            +T+G+     DF       N  +I+   WDTAG E++  +   YY      I+M+D+T 
Sbjct: 38  VSTVGI-----DFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITN 92

Query: 63  RLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISA 119
             ++  V  W   +     +N  ++L GNK D+++ R V +++          +++E SA
Sbjct: 93  EESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASA 152

Query: 120 KSNYNFEKPFLYLARKL 136
           K N N ++ F  L   +
Sbjct: 153 KDNINVKQTFERLVDVI 169

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  104 bits (261), Expect = 6e-29
 Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 7/109 (6%)

Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAG E+F  +RD Y  +GQ   +++ +TA+ T+ ++      + RV   E++P++L G
Sbjct: 56  LDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVG 115

Query: 90  NKVD-VKNRQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 134
           NK D    R V   + + +   +  N  + E SAKS  N  + F  L R
Sbjct: 116 NKCDLEDERVVGKEQGQNLA-RQWCNCAFLESSAKSKINVNEIFYDLVR 163

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  105 bits (263), Expect = 8e-29
 Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 23/145 (15%)

Query: 8   KATIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 62
            AT+GV     DF       +  +     WDTAGQE+F  +   Y+      ++++DVT 
Sbjct: 58  SATLGV-----DFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTC 112

Query: 63  RLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-------RQVK---AKQVTFHRKKN 111
             ++ N+  W   +     E +PI+L GNK D+++       + V     ++        
Sbjct: 113 EKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEK--LAMTYG 170

Query: 112 LQYYEISAKSNYNFEKPFLYLARKL 136
             + E SAK   N  +  L+LAR++
Sbjct: 171 ALFCETSAKDGSNIVEAVLHLAREV 195

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  105 bits (263), Expect = 8e-29
 Identities = 29/144 (20%), Positives = 54/144 (37%), Gaps = 20/144 (13%)

Query: 8   KATIGVEVHPLDFFT-----NCGKIRF--YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDV 60
             T GV     +            +    +  DTAG + +      Y+     AI++FDV
Sbjct: 52  AMTSGV-----EVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDV 106

Query: 61  TARLTYKNVPTWHRDL----CRVCENIPIVLCGNKVDVKN--RQVKAKQV-TFHRKKNLQ 113
           ++  ++++   W   L          +  VL  NK D+     QV+      +     L 
Sbjct: 107 SSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLD 166

Query: 114 YYEISAK-SNYNFEKPFLYLARKL 136
           ++++SA     + + PFL +A   
Sbjct: 167 FFDVSANPPGKDADAPFLSIATTF 190

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  104 bits (262), Expect = 8e-29
 Identities = 40/137 (29%), Positives = 69/137 (50%), Gaps = 13/137 (9%)

Query: 8   KATIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 62
            +TIG+     DF       +  +I+   WDTAGQE+F  +   YY      ++++D+T 
Sbjct: 38  ISTIGI-----DFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITN 92

Query: 63  RLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISA 119
             ++ N+  W R++      ++  ++ GNK DV + RQV  ++         +++ E SA
Sbjct: 93  EKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSA 152

Query: 120 KSNYNFEKPFLYLARKL 136
           K+N N E  F  LAR +
Sbjct: 153 KANINVENAFFTLARDI 169

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  104 bits (262), Expect = 1e-28
 Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 17/139 (12%)

Query: 8   KATIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 62
            +TIGV     DF       +   I+   WDTAGQE+F  +   YY      I+++DVT 
Sbjct: 46  ISTIGV-----DFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD 100

Query: 63  RLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVK---AKQVTFHRKKNLQYYEI 117
           + ++ NV  W +++ R   EN+  +L GNK D+   + V    AK+  F     + + E 
Sbjct: 101 QESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKE--FADSLGIPFLET 158

Query: 118 SAKSNYNFEKPFLYLARKL 136
           SAK+  N E+ F+ +A ++
Sbjct: 159 SAKNATNVEQSFMTMAAEI 177

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  104 bits (262), Expect = 1e-28
 Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 6/107 (5%)

Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
           W+  G+ ++  L D     G   +I++ +T R +++        L R    E+IPI+L G
Sbjct: 95  WENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVG 152

Query: 90  NKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 134
           NK D V+ R+V   +        + ++ E SA   +N ++ F  + R
Sbjct: 153 NKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVR 199

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  103 bits (260), Expect = 2e-28
 Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 6/117 (5%)

Query: 24  CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CE 81
              I    W+  G+ ++  L D     G   +I++ +T R +++        L R    E
Sbjct: 56  ATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTE 113

Query: 82  NIPIVLCGNKVD-VKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           +IPI+L GNK D V+ R+V   +        + ++ E SA   +N ++ F  + R++
Sbjct: 114 DIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  103 bits (260), Expect = 2e-28
 Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 13/137 (9%)

Query: 8   KATIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 62
            +TIGV     DF       +   ++   WDTAGQE+F  +   YY      II++DVT 
Sbjct: 38  ISTIGV-----DFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTD 92

Query: 63  RLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISA 119
           + ++  V  W +++ R     +  +L GNK D+K+ R V+      F     + + E SA
Sbjct: 93  QESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSA 152

Query: 120 KSNYNFEKPFLYLARKL 136
             + N E  FL +AR++
Sbjct: 153 LDSTNVEDAFLTMARQI 169

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  103 bits (259), Expect = 5e-28
 Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 13/137 (9%)

Query: 8   KATIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 62
           K+TIGV     +F T        +I+   WDTAGQE++  +   YY     A+I++D++ 
Sbjct: 43  KSTIGV-----EFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISK 97

Query: 63  RLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISA 119
             +Y+N   W  +L     +N+ + L GNK D+ + R V  ++  TF ++  L + E SA
Sbjct: 98  SSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSA 157

Query: 120 KSNYNFEKPFLYLARKL 136
            ++ N +K F  L   +
Sbjct: 158 LNSENVDKAFEELINTI 174

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  101 bits (254), Expect = 1e-27
 Identities = 45/138 (32%), Positives = 69/138 (50%), Gaps = 14/138 (10%)

Query: 8   KATIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 62
            +TIGV     DF          +++   WDTAGQE+F  +   YY     AI+ +D+T 
Sbjct: 59  GSTIGV-----DFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITK 113

Query: 63  RLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKN-LQYYEIS 118
           R ++ +VP W  D+ +    NI  +L GNK D+   R+V   +  +     + L   E S
Sbjct: 114 RSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETS 173

Query: 119 AKSNYNFEKPFLYLARKL 136
           AK + N E+ FL +A +L
Sbjct: 174 AKDSSNVEEAFLRVATEL 191

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  100 bits (251), Expect = 4e-27
 Identities = 43/138 (31%), Positives = 77/138 (55%), Gaps = 14/138 (10%)

Query: 8   KATIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 62
           K+T+GV     DF          KIR   WDTAGQE+F  +   YY   +  I+++D+T 
Sbjct: 56  KSTVGV-----DFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITK 110

Query: 63  RLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVK-NRQVKAKQ-VTFHRKKN-LQYYEIS 118
           + T+ ++P W + + +   E+  ++L GNK+D + +R++  +Q   F ++   +++ E S
Sbjct: 111 KETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEAS 170

Query: 119 AKSNYNFEKPFLYLARKL 136
           AK N+N ++ FL L   +
Sbjct: 171 AKDNFNVDEIFLKLVDDI 188

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score = 98.5 bits (246), Expect = 2e-26
 Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 6/110 (5%)

Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            DTAGQE     R+G+   G+  ++++D+T R +++ V      L  +   +N+ ++L G
Sbjct: 81  LDTAGQEDTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVG 139

Query: 90  NKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNY-NFEKPFLYLARKL 136
           NK D   +RQV  ++      +    +YE SA +   N  + F  L R++
Sbjct: 140 NKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score = 98.0 bits (245), Expect = 3e-26
 Identities = 22/112 (19%), Positives = 45/112 (40%), Gaps = 14/112 (12%)

Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 89
            D  G  +       +       + +F +   ++++ V  +   LC       +P+VL G
Sbjct: 72  RDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVG 126

Query: 90  NKVDVKN---RQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 135
            +  +     R +   +A++++    K   YYE  A    N E+ F  +A+K
Sbjct: 127 TQDAISAANPRVIDDSRARKLS-TDLKRCTYYETCATYGLNVERVFQDVAQK 177

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score = 96.5 bits (241), Expect = 1e-25
 Identities = 45/144 (31%), Positives = 75/144 (52%), Gaps = 22/144 (15%)

Query: 8   KATIGVEVHPLDFFTNC----GK-IRFYCWDTAGQEKF-GGLRDGYYIHGQCAIIMFDVT 61
           +ATIGV     DF        G+ I+   WDTAGQE+F   +   YY +    + ++D+T
Sbjct: 50  EATIGV-----DFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMT 104

Query: 62  ARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKN-RQV---KAKQVTFHRKKNLQYY 115
              ++ ++P W  +  +  +  +IP +L GNK D+++  QV    A++  F    ++  +
Sbjct: 105 NMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQK--FADTHSMPLF 162

Query: 116 EISAKS---NYNFEKPFLYLARKL 136
           E SAK+   N + E  F+ LA KL
Sbjct: 163 ETSAKNPNDNDHVEAIFMTLAHKL 186

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score = 94.5 bits (235), Expect = 5e-25
 Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 16/140 (11%)

Query: 8   KATIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 62
           + TIG       F T     N   ++F  WDTAGQE+F  L   YY + Q A++++DVT 
Sbjct: 33  EPTIGA-----AFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTK 87

Query: 63  RLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVK----NRQVKAKQV-TFHRKKNLQYYE 116
             ++     W ++L     ++I I L GNK+D       R+V  ++      +K L ++E
Sbjct: 88  PQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFE 147

Query: 117 ISAKSNYNFEKPFLYLARKL 136
            SAK+  N    FL +  K+
Sbjct: 148 TSAKTGENVNDVFLGIGEKI 167

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score = 90.9 bits (226), Expect = 1e-23
 Identities = 19/148 (12%), Positives = 50/148 (33%), Gaps = 24/148 (16%)

Query: 8   KATIGVEVHPLDFFT--------NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 59
            AT+G+     D               +    WD AG+E+F      +       + ++D
Sbjct: 34  SATVGI-----DVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYD 88

Query: 60  VTARLT-YKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQ 113
           ++        +  W  ++     + P++L G  +DV + + +   ++        K+   
Sbjct: 89  LSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFP 148

Query: 114 -----YYEISAKSNYNFEKPFLYLARKL 136
                ++  + + +    K    +  + 
Sbjct: 149 AIRDYHFVNATEESDALAKLRKTIINES 176

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 94.7 bits (235), Expect = 4e-23
 Identities = 25/152 (16%), Positives = 51/152 (33%), Gaps = 13/152 (8%)

Query: 8   KATIGVEVHPLDFFTNCG--------KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 59
             T G+ V         G        +  F+ WD  GQE        +       +++ D
Sbjct: 71  SQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLD 130

Query: 60  VTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD-VKNRQVKAKQVT-FHRKKNLQYYEI 117
                T  N   W R + +     P+++  NK+D   +  ++ K++         +++ I
Sbjct: 131 SR---TDSNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRI 187

Query: 118 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPA 149
           S K+    E     L   +    +++      
Sbjct: 188 SCKNGDGVESIAKSLKSAVLHPDSIYGTPLAP 219

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score = 89.2 bits (222), Expect = 7e-23
 Identities = 23/110 (20%), Positives = 48/110 (43%), Gaps = 8/110 (7%)

Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVL 87
            DTA  +      + Y       ++++ V +R ++ +  ++   L         +IP +L
Sbjct: 74  MDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALL 132

Query: 88  CGNKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNY-NFEKPFLYLAR 134
            GNK+D  + RQV   + V    +    ++E+SA  ++ + +  F    R
Sbjct: 133 LGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVR 182

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score = 87.7 bits (218), Expect = 3e-22
 Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 14/114 (12%)

Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV----CENIPIVL 87
            + AG          +       I +F +    +++ V   H  L  +       + + L
Sbjct: 59  REEAGAP-----DAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALAL 113

Query: 88  --CGNKVDVKN-RQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
               +++   + R V   +        K   YYE  A    N ++ F  +A+K+
Sbjct: 114 VGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKV 167

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 86.6 bits (214), Expect = 3e-21
 Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 7/127 (5%)

Query: 17  PLDFFTNCGKIRFYCWDTAGQEKF--GGLRDGYYIHGQCAIIMFDVT--ARLTYKNVPTW 72
                 +  K+ ++C D  G E+           +     ++  DV+      + +   +
Sbjct: 127 AATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKF 186

Query: 73  HRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 129
             +L         PIV+   K D    R ++        KKNLQ  E SA+SN N +  F
Sbjct: 187 VSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVNVDLAF 246

Query: 130 LYLARKL 136
             L + +
Sbjct: 247 STLVQLI 253

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score = 80.8 bits (200), Expect = 1e-19
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 10/117 (8%)

Query: 26  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIP 84
           +   + WDTAGQE++  LR   Y      ++ F V  R ++ N+ T W  ++    +   
Sbjct: 70  EFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAK 129

Query: 85  IVLCGNKVDVKNRQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPFLYLAR 134
            VL G KVD+  R+  +  VT     +L        Y E S+ +     + F     
Sbjct: 130 TVLVGLKVDL--RKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVD 184

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score = 79.7 bits (197), Expect = 4e-19
 Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 12/121 (9%)

Query: 26  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIP 84
            +    WDTAGQE +  LR   Y      ++ F + ++ +Y+NV   W  +L R   N+P
Sbjct: 56  IVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVP 115

Query: 85  IVLCGNKVDVKN----RQVKAKQVTFH-------RKKNLQYYEISAKSNYNFEKPFLYLA 133
           IVL G K+D+++           +T         +     Y E S+K+  N +  F    
Sbjct: 116 IVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI 175

Query: 134 R 134
           +
Sbjct: 176 K 176

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score = 76.6 bits (189), Expect = 4e-18
 Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 14/123 (11%)

Query: 26  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIP 84
            +    WDTAGQE +  LR   Y      I+ F + ++ +Y+NV   W  +L      +P
Sbjct: 55  TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVP 114

Query: 85  IVLCGNKVDVKN------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPFLY 131
           IVL G K+D+++          A  +T  + + L        Y E S+KS  N +  F  
Sbjct: 115 IVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDA 174

Query: 132 LAR 134
             R
Sbjct: 175 AIR 177

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score = 74.4 bits (183), Expect = 6e-17
 Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 16/125 (12%)

Query: 26  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIP 84
            +  + WDTAGQ+ +  LR  +Y      ++ FDVT+  ++ N+   W+ ++   C+ +P
Sbjct: 81  PVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVP 140

Query: 85  IVLCGNKVDVKN--------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPF 129
           I++ G K D++         R+   + VT+HR + +        Y E SA+ + N    F
Sbjct: 141 IIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF 200

Query: 130 LYLAR 134
              A 
Sbjct: 201 QEAAE 205

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score = 74.0 bits (182), Expect = 6e-17
 Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 16/120 (13%)

Query: 26  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIP 84
           ++    WDTAGQE +  LR   Y      ++ F + +  + +N+P  W  ++   C N+P
Sbjct: 72  QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP 131

Query: 85  IVLCGNKVDVKN--------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPF 129
           I+L GNK D++          ++K + V     +++        Y E SAK+     + F
Sbjct: 132 IILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score = 74.0 bits (182), Expect = 7e-17
 Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 16/114 (14%)

Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGN 90
           WDTAGQE +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G 
Sbjct: 83  WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 142

Query: 91  KVDVKN--------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPF 129
           K+D+++        ++ K   +T+ +   +       +Y E SA +    +  F
Sbjct: 143 KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score = 73.2 bits (180), Expect = 1e-16
 Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 16/109 (14%)

Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGN 90
            DTAGQ++F  LR   Y +    ++ F V +  +++NV   W  ++   C   PI+L G 
Sbjct: 73  CDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGT 132

Query: 91  KVDVKN--------RQVKAKQVTFH-------RKKNLQYYEISAKSNYN 124
           + D++          + K K V            K   Y E SA +  N
Sbjct: 133 QSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKN 181

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score = 72.5 bits (178), Expect = 2e-16
 Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 16/120 (13%)

Query: 26  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIP 84
            +    WDTAGQE +  LR   Y     ++I F + +  +++NV   W+ ++   C N P
Sbjct: 52  PVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTP 111

Query: 85  IVLCGNKVDVKN--------RQVKAKQVTFH-------RKKNLQYYEISAKSNYNFEKPF 129
           I+L G K+D+++        ++ K   +T+            ++Y E SA +    +  F
Sbjct: 112 IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score = 72.1 bits (177), Expect = 3e-16
 Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 16/114 (14%)

Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGN 90
           WDTAGQE +  LR   Y      ++ F V +  + +N+P  W  ++   C N+PI+L  N
Sbjct: 78  WDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVAN 137

Query: 91  KVDVKN--------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPF 129
           K D+++         ++K + V     + +        Y E SAK+     + F
Sbjct: 138 KKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF 191

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score = 71.7 bits (176), Expect = 4e-16
 Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 16/115 (13%)

Query: 26  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIP 84
           +I    WDT+G   +  +R   Y      +I FD++   T  +V   W  ++   C N  
Sbjct: 54  RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK 113

Query: 85  IVLCGNKVDVKN--------RQVKAKQVTFHRKKNL-------QYYEISAKSNYN 124
           ++L G K D++            +   V++ +  N+        Y E SA  + N
Sbjct: 114 MLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 168

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score = 70.6 bits (173), Expect = 9e-16
 Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 16/114 (14%)

Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGN 90
           +DTAGQE +  LR   Y      +I F V    +++NV   W  +L     N+P +L G 
Sbjct: 71  YDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGT 130

Query: 91  KVDVKN--------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPF 129
           ++D+++          +K K +   + + L        Y E SA +    +  F
Sbjct: 131 QIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score = 70.2 bits (172), Expect = 2e-15
 Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 16/109 (14%)

Query: 32  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGN 90
           WDT+G   +  +R   Y      +I FD++   T  +V   W  ++   C N  ++L G 
Sbjct: 81  WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGC 140

Query: 91  KVDVKN--------RQVKAKQVTFHRKKNL-------QYYEISAKSNYN 124
           K D++            +   V++ +  N+        Y E SA  + N
Sbjct: 141 KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 189

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 68.9 bits (168), Expect = 2e-14
 Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 16/115 (13%)

Query: 26  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIP 84
            +    WDTAG E +  LR   Y      +I F + +  ++ +V   W+ ++   C N P
Sbjct: 202 PVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTP 261

Query: 85  IVLCGNKVDVKN--------RQVKAKQVTFHRKKNL-------QYYEISAKSNYN 124
           I+L G K+D+++        ++ K   +T+ +   +       +Y E SA +   
Sbjct: 262 IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG 316

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 65.3 bits (159), Expect = 1e-13
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 26  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIP 84
           ++    WDT+G   +  +R   Y      ++ FD++   T  +    W  ++   C +  
Sbjct: 74  RVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR 133

Query: 85  IVLCGNKVD 93
           ++L G K D
Sbjct: 134 VLLIGCKTD 142

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 57.8 bits (140), Expect = 5e-11
 Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 10/130 (7%)

Query: 1   MNVSVWGKATIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 59
           ++++   + T+  +  PLD     G K RF+ +   GQ  +   R          + + D
Sbjct: 47  VSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVAD 106

Query: 60  VTARLTYKNVPTWHRDLCRVCE------NIPIVLCGNKVDVKNRQVKAKQVT--FHRKKN 111
                   N  +       + E      ++PIV+  NK D+ +  +  + V      +  
Sbjct: 107 SAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA-LPVEMVRAVVDPEGK 165

Query: 112 LQYYEISAKS 121
               E  A  
Sbjct: 166 FPVLEAVATE 175

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 50.4 bits (120), Expect = 5e-08
 Identities = 29/157 (18%), Positives = 56/157 (35%), Gaps = 23/157 (14%)

Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-----GGLRDGYYIHGQCAIIMFDVTAR 63
           ATI VE   L F  N   +    WD  GQ+ F        +D  +   Q  I +FDV + 
Sbjct: 37  ATIDVEHSHLRFLGN---MTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVEST 93

Query: 64  LTYKNVPTWHR---DLCRVCENIPIVLCGNKVDV----------KNRQVKAKQVTFHRKK 110
              K++  + +    L +   +  I +  +K+D+          +       + +     
Sbjct: 94  EVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGF 153

Query: 111 NLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVES 147
                  ++  + +  K +  +   L   PN+   +S
Sbjct: 154 PNLIGFPTSIWDESLYKAWSQIVCSLI--PNMSNHQS 188

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 45.0 bits (106), Expect = 3e-06
 Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 8/90 (8%)

Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL---RDGYYIHGQCAIIMFDVTARLT 65
           +T  +    +   +    + F  WD  GQ  F       +  +      I + D      
Sbjct: 54  STNKIYKDDISNSSF---VNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYM 110

Query: 66  --YKNVPTWHRDLCRVCENIPIVLCGNKVD 93
                +        +V  ++   +  +KVD
Sbjct: 111 EALTRLHITVSKAYKVNPDMNFEVFIHKVD 140

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 37.6 bits (88), Expect = 8e-04
 Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 12/92 (13%)

Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIG  V  L +      ++   WD  GQ         YY      I + D T +     +
Sbjct: 49  TIGFNVETLSY----KNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDK---DRM 101

Query: 70  PTWHRDLCRVCE-----NIPIVLCGNKVDVKN 96
            T  ++L  + +     +  +++  NK D   
Sbjct: 102 STASKELHLMLQEEELQDAALLVFANKQDQPG 133

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	186
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	100.0
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.98
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.94
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.94
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.94
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.94
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.94
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.94
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.94
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.94
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.93
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.93
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.93
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.93
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.93
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.93
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.93
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.93
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.93
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.93
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.93
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.93
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.93
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.93
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.93
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.93
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.93
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.93
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.93
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.93
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.93
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.93
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.93
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.93
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.93
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.93
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.93
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.93
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.93
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.92
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.92
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.92
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.92
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.92
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.92
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.92
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.92
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.92
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.92
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.92
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.92
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.92
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.92
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.92
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.92
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.92
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.92
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.92
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.92
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.92
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.92
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.91
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.91
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.91
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.91
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.91
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.91
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.91
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.91
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.91
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.91
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.91
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.91
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.91
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.91
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.91
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.91
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.9
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.9
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.9
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.9
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.9
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.9
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.9
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.89
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.89
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.89
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.89
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.89
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.89
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.89
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.89
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.88
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.88
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.88
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.87
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.79
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.87
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.86
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.86
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.86
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.85
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.85
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.85
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.85
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.85
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.84
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.83
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.83
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.83
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.82
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.81
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.81
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.81
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.79
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.77
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.77
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.76
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.75
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.74
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.74
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.73
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.72
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.72
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.7
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.69
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.68
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.68
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.67
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.67
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.66
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.66
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.65
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.65
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.63
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.63
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.63
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.62
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.61
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.6
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.59
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.59
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.58
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.58
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.57
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.57
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.56
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.56
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.55
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.55
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.54
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.53
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.53
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.52
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.51
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.5
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.5
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.49
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.49
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.48
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.47
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.46
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.46
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.46
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.44
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.43
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.43
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.42
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.42
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.42
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.41
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.41
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.4
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.36
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.36
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.35
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.35
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.33
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.32
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.3
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.28
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.27
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.26
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.2
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.19
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.17
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.12
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.12
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.11
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.06
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.05
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.04
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.03
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.02
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.01
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.0
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	98.98
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.91
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	98.89
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	98.85
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	98.84
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	98.83
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	98.8
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.8
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	98.78
2hf9_A	226	Probable hydrogenase nickel incorporation protein	98.75
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.64
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	98.61
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	98.52
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.48
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	98.47
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	98.41
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.41
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.15
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.1
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	97.07
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	97.07
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	96.57
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	96.08
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	95.46
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	95.42
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	95.22
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	95.07
3cwq_A	209	Para family chromosome partitioning protein; alpha	94.1
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	93.58
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	92.94
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	92.03
3end_A	307	Light-independent protochlorophyllide reductase ir	91.81
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	91.61
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	90.87
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	90.43
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	89.38
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	89.18
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	88.8
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	87.97
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	87.96
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	87.77
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	87.65
2xj4_A	286	MIPZ; replication, cell division, ATPase, WACA; 1.	85.62
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	83.41
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	82.48
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	81.7
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	81.26

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=100.00  E-value=1.1e-31  Score=203.15  Aligned_cols=180  Identities=74%  Similarity=1.205  Sum_probs=161.1

Q ss_pred             CccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCC
Q 029854            4 SVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI   83 (186)
Q Consensus         4 ~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~   83 (186)
                      ...+.||+|.++....+.+++..+.+.||||+|++.|..++..++++++++|+|||++++.+|+.+..|+..+.....+.
T Consensus        41 ~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~  120 (221)
T 3gj0_A           41 EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENI  120 (221)
T ss_dssp             TCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTC
T ss_pred             CCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999988899


Q ss_pred             CEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCCcccccCCCCCCCccccCHHHHH
Q 029854           84 PIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  163 (186)
Q Consensus        84 p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (186)
                      |+++|+||+|+.++....+...++...+++++++||++|.|++++|.++.+.+...+.......+...+++...+....+
T Consensus       121 p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (221)
T 3gj0_A          121 PIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAA  200 (221)
T ss_dssp             CEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHHHTCTTCCEEECCCBCCCSSCCCHHHHH
T ss_pred             CEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhCcccccccCCCCCCCCCCcchhhhh
Confidence            99999999999876666666678888899999999999999999999999999999888888888888999999999999


Q ss_pred             HHHHHHHHHhCCCCCCCccc
Q 029854          164 QHEAELAAAASQPLPDDDDD  183 (186)
Q Consensus       164 ~~~~~~~~~~~~~~p~~~~~  183 (186)
                      +++..++.++.+++|++||+
T Consensus       201 ~~~~~~~~~~~~~~p~~~~~  220 (221)
T 3gj0_A          201 QYEHDLEVAQTTALPDEDDD  220 (221)
T ss_dssp             HHHHHHHHHHTC--------
T ss_pred             hhHHHHhhhhccCCCCCCCC
Confidence            99999999999999998876

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.98  E-value=6.1e-32  Score=204.75  Aligned_cols=139  Identities=29%  Similarity=0.475  Sum_probs=115.6

Q ss_pred             CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-
Q 029854            2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-   80 (186)
Q Consensus         2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-   80 (186)
                      .++..|.||+|.++..+.+.+++..+.++||||+|+++|..++..|+++|+++++|||++++.||+.+..|+..+.... 
T Consensus        37 ~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~  116 (216)
T 4dkx_A           37 SFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG  116 (216)
T ss_dssp             CCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT
T ss_pred             CCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcC
Confidence            3577899999999999999999999999999999999999999999999999999999999999999999999998765 


Q ss_pred             CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029854           81 ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                      ++.|++|||||+|+.+ +.+..+ ..+++++++++|++|||++|.||+++|..|++.+....
T Consensus       117 ~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~~~~  178 (216)
T 4dkx_A          117 SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGME  178 (216)
T ss_dssp             TSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHHC----
T ss_pred             CCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHHHHhhh
Confidence            6899999999999985 555544 66899999999999999999999999999999986543

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.94  E-value=3.1e-26  Score=172.72  Aligned_cols=138  Identities=17%  Similarity=0.276  Sum_probs=119.5

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHh-HHHHHHHHHhhcC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN-VPTWHRDLCRVCE   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~-i~~~~~~~~~~~~   81 (186)
                      +...|.||+|.++. +.+.+++..+.+.||||+|+++|..++..+++++|++|+|||++++.+|+. +..|+..+....+
T Consensus        52 ~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~  130 (214)
T 3q3j_B           52 YPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP  130 (214)
T ss_dssp             CCSSCCCCSEEEEE-EEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT
T ss_pred             CCCCcCCeeeeeEE-EEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC
Confidence            56778999998874 677788999999999999999999999999999999999999999999998 6899999999888


Q ss_pred             CCCEEEEEeCCCCCC-------------cccChH-HHHHHHHcCC-cEEEeccCCCCC-chHHHHHHHHHHhCCCC
Q 029854           82 NIPIVLCGNKVDVKN-------------RQVKAK-QVTFHRKKNL-QYYEISAKSNYN-FEKPFLYLARKLAGDPN  141 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-------------~~~~~~-~~~~~~~~~~-~~~~~Sa~~~~g-i~~l~~~l~~~i~~~~~  141 (186)
                      +.|++||+||+|+.+             +.+..+ ...++..+++ +|++|||++|.| |+++|..+++.+.....
T Consensus       131 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~  206 (214)
T 3q3j_B          131 STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPS  206 (214)
T ss_dssp             TSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred             CCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhccCc
Confidence            999999999999975             334443 5688899998 999999999998 99999999999986643

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.94  E-value=1.8e-26  Score=169.02  Aligned_cols=136  Identities=28%  Similarity=0.514  Sum_probs=107.3

Q ss_pred             CccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-CC
Q 029854            4 SVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-EN   82 (186)
Q Consensus         4 ~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~~   82 (186)
                      ...+.||+|.++....+.+++..+.+.||||||++.|..++..+++++|++|+|||++++.+|+.+..|+..+.... .+
T Consensus        34 ~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~  113 (183)
T 2fu5_C           34 NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASAD  113 (183)
T ss_dssp             --CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT
T ss_pred             CCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999998764 57


Q ss_pred             CCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           83 IPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        83 ~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      .|+++|+||+|+.+ +.+.. +...++..++++++++||++|.||+++|.++.+.+...
T Consensus       114 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i~~~  172 (183)
T 2fu5_C          114 VEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAK  172 (183)
T ss_dssp             CEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999975 34443 35678888899999999999999999999999988653

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.94  E-value=3e-26  Score=171.07  Aligned_cols=138  Identities=31%  Similarity=0.501  Sum_probs=115.0

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      ++..+.||+|.++....+.+++..+.+.||||+|+++|..++..+++++|++|+|||++++.+|+.+..|+..+.... .
T Consensus        54 ~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~  133 (201)
T 2hup_A           54 FSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGS  133 (201)
T ss_dssp             C----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCT
T ss_pred             CCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence            456789999999999999999999999999999999999999999999999999999999999999999999998876 6


Q ss_pred             CCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029854           82 NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                      +.|++||+||+|+.+ +.+.. +..+++..+++ +++++||++|.||+++|.+|++.+....
T Consensus       134 ~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~  195 (201)
T 2hup_A          134 NIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRH  195 (201)
T ss_dssp             TCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            799999999999975 34443 35678888898 9999999999999999999999987543

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.94  E-value=3.6e-25  Score=161.24  Aligned_cols=137  Identities=31%  Similarity=0.490  Sum_probs=122.3

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN   82 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~   82 (186)
                      +...+.||++.++....+.+++..+.+.+|||||++.+..++..+++++|++|+|||++++.++..+..|+..+....++
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  113 (181)
T 3tw8_B           34 FSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDD  113 (181)
T ss_dssp             ---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTT
T ss_pred             CCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             CCEEEEEeCCCCCCcc-cC-hHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           83 IPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        83 ~p~ilv~nK~Dl~~~~-~~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      .|+++|+||+|+.+.. +. .....++...+++++++||++|.|++++|+++.+.+...
T Consensus       114 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  172 (181)
T 3tw8_B          114 VCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRA  172 (181)
T ss_dssp             SEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            9999999999997533 33 335578888899999999999999999999999988654

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.94  E-value=4.5e-25  Score=163.33  Aligned_cols=137  Identities=20%  Similarity=0.313  Sum_probs=121.5

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhH-HHHHHHHHhhcC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i-~~~~~~~~~~~~   81 (186)
                      +...|.||+|.++.. .+.+++..+.++||||||+++|..++..+++++|++|+|||++++.+|+.+ ..|+..+.+...
T Consensus        48 ~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  126 (194)
T 3reg_A           48 IPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID  126 (194)
T ss_dssp             CCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT
T ss_pred             CCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC
Confidence            456789999988875 677899999999999999999999999999999999999999999999997 789999988878


Q ss_pred             CCCEEEEEeCCCCCC---cccChH-HHHHHHHcCCc-EEEeccCCCCCchHHHHHHHHHHhCCC
Q 029854           82 NIPIVLCGNKVDVKN---RQVKAK-QVTFHRKKNLQ-YYEISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~---~~~~~~-~~~~~~~~~~~-~~~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                      +.|+++|+||+|+.+   +.+..+ ...++..+++. ++++||++|.||+++|.++++.+....
T Consensus       127 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  190 (194)
T 3reg_A          127 TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNK  190 (194)
T ss_dssp             TSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHCSC
T ss_pred             CCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHhcC
Confidence            899999999999974   334433 55788888988 999999999999999999999998764

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=2.8e-25  Score=163.96  Aligned_cols=139  Identities=34%  Similarity=0.532  Sum_probs=125.2

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      +...+.||+|.++....+.+++..+.+.||||||++.+..++..+++++|++|+|||++++.++..+..|+..+....  
T Consensus        40 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~  119 (195)
T 1x3s_A           40 FDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTR  119 (195)
T ss_dssp             CCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSC
T ss_pred             CCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCc
Confidence            456789999999999999999999999999999999999999999999999999999999999999999999998764  


Q ss_pred             CCCCEEEEEeCCCCCCcccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCC
Q 029854           81 ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN  141 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  141 (186)
                      .+.|+++|+||+|+.++.+..+ ...++..++++++++||++|.|++++|.+|.+.+.+.+.
T Consensus       120 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  181 (195)
T 1x3s_A          120 NDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPG  181 (195)
T ss_dssp             SCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTSGG
T ss_pred             CCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhhhh
Confidence            5799999999999976655543 567888889999999999999999999999999987543

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=1.8e-25  Score=167.17  Aligned_cols=137  Identities=33%  Similarity=0.568  Sum_probs=122.3

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...+.||+|.++....+.+++..+.++||||+|+++|..++..+++++|++|+|||++++.+|+.+..|+..+.... .
T Consensus        51 ~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~  130 (201)
T 2ew1_A           51 FPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASN  130 (201)
T ss_dssp             CCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT
T ss_pred             CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence            456788999999999999999999999999999999999999999999999999999999999999999999998875 5


Q ss_pred             CCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           82 NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      +.|+++|+||+|+.+ +.+..+ ...++...+++++++||++|.||+++|.++++.+...
T Consensus       131 ~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~  190 (201)
T 2ew1_A          131 KVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISE  190 (201)
T ss_dssp             TCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            789999999999974 344333 5577888899999999999999999999999988653

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.94  E-value=6.9e-27  Score=172.67  Aligned_cols=135  Identities=16%  Similarity=0.113  Sum_probs=119.0

Q ss_pred             ccccccceEEEEEEEE-EECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCC------ChhhHHhHHHHHHHHH
Q 029854            5 VWGKATIGVEVHPLDF-FTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT------ARLTYKNVPTWHRDLC   77 (186)
Q Consensus         5 ~~~~~Tig~~~~~~~~-~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~------~~~s~~~i~~~~~~~~   77 (186)
                      ..+.||+|.++....+ .+++..+.++||||||+++|..++..+++++|++|+|||++      +..+|+.+..|+..+.
T Consensus        51 ~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~  130 (198)
T 3t1o_A           51 TEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG  130 (198)
T ss_dssp             CSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT
T ss_pred             cccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc
Confidence            4477899999998877 77889999999999999999999999999999999999999      5678888888988886


Q ss_pred             hhcCCCCEEEEEeCCCCCCcccChHHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           78 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        78 ~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      ....+.|+++|+||+|+.+.....+..+++..+++ +++++||++|.|++++|.+|++.+.+.
T Consensus       131 ~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~  193 (198)
T 3t1o_A          131 LTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLAR  193 (198)
T ss_dssp             CCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             cccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence            55578999999999999876444556688888888 999999999999999999999988754

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.93  E-value=2.1e-25  Score=160.91  Aligned_cols=137  Identities=27%  Similarity=0.474  Sum_probs=116.8

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...+.||+|.++....+.+++..+.+.||||||++.+..++..+++++|++|+|||++++.+++.+..|+..+.... .
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~  107 (170)
T 1g16_A           28 FNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND  107 (170)
T ss_dssp             CCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCT
T ss_pred             CCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence            456789999999998899989999999999999999999999999999999999999999999999999999988875 5


Q ss_pred             CCCEEEEEeCCCCCCcccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           82 NIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      +.|+++|+||+|+.++....+ ...+++.++++++++||++|.|++++|.++.+.+.+.
T Consensus       108 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~  166 (170)
T 1g16_A          108 EAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK  166 (170)
T ss_dssp             TCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             CCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            799999999999976555544 4578888899999999999999999999999988654

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.93  E-value=2.3e-25  Score=160.42  Aligned_cols=136  Identities=29%  Similarity=0.527  Sum_probs=122.5

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN   82 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~   82 (186)
                      +...+.||+|.++....+.+++..+.+.+|||||++.+..++..+++++|++++|||++++.+++.+..|+..+.....+
T Consensus        30 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~  109 (168)
T 1z2a_A           30 FTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGD  109 (168)
T ss_dssp             CCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCS
T ss_pred             CCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999887778


Q ss_pred             CCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           83 IPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        83 ~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      .|+++|+||+|+.+ +.+.. +...++..++++++++||++|.|++++|+++.+.+.+
T Consensus       110 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  167 (168)
T 1z2a_A          110 IPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ  167 (168)
T ss_dssp             CCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred             CCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence            99999999999975 33333 3557888889999999999999999999999988864

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.93  E-value=6e-25  Score=160.61  Aligned_cols=139  Identities=22%  Similarity=0.225  Sum_probs=120.5

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      +...|.||++..+ ...+.+++..+.++||||||++.|..++..+++++|++++|||++++.+|+.+..|+..+....  
T Consensus        31 ~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  109 (181)
T 3t5g_A           31 FVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK  109 (181)
T ss_dssp             CCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC--
T ss_pred             CCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence            4567899999888 6778889999999999999999999999999999999999999999999999999999987764  


Q ss_pred             CCCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCCc
Q 029854           81 ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNL  142 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~  142 (186)
                      .+.|+++|+||+|+.+ +.+.. +...++..++++++++||++|.|++++|.++++.+......
T Consensus       110 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~  173 (181)
T 3t5g_A          110 VQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMDGA  173 (181)
T ss_dssp             --CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHTC---
T ss_pred             CCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHhcCC
Confidence            4799999999999974 44443 35678899999999999999999999999999999876543

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.93  E-value=2.6e-25  Score=160.59  Aligned_cols=136  Identities=26%  Similarity=0.487  Sum_probs=114.6

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...+.||+|.++....+.+++..+.+.+|||||++.+..++..+++++|++|+|||++++.+++.+..|+..+.... .
T Consensus        31 ~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  110 (170)
T 1z08_A           31 FNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN  110 (170)
T ss_dssp             CCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGG
T ss_pred             CCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC
Confidence            446789999999999999999999999999999999999999999999999999999999999999999999887765 5


Q ss_pred             CCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           82 NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      +.|+++|+||+|+.+ +.+.. +...+++..+++++++||++|.|++++|+++++.+.+
T Consensus       111 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  169 (170)
T 1z08_A          111 EICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE  169 (170)
T ss_dssp             GSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred             CCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHhh
Confidence            799999999999975 33433 3567888889999999999999999999999998764

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.93  E-value=5.5e-25  Score=159.98  Aligned_cols=137  Identities=30%  Similarity=0.552  Sum_probs=118.2

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      +...+.||+|.++....+.+++..+.+.||||||++.+..++..+++++|++++|||++++.+++.+..|+..+....  
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  111 (177)
T 1wms_A           32 FDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADV  111 (177)
T ss_dssp             CCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTC
T ss_pred             CCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccc
Confidence            456789999999999999999999999999999999999999999999999999999999999999999999987764  


Q ss_pred             ---CCCCEEEEEeCCCCCCcccChH-HHHHHH-HcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           81 ---ENIPIVLCGNKVDVKNRQVKAK-QVTFHR-KKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        81 ---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                         .+.|+++|+||+|+.++....+ ...++. ..+++++++||++|.|++++|+++++.+...
T Consensus       112 ~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  175 (177)
T 1wms_A          112 KEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT  175 (177)
T ss_dssp             SCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             cccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence               5789999999999986555544 456666 5578999999999999999999999998764

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.93  E-value=1.4e-25  Score=163.22  Aligned_cols=137  Identities=25%  Similarity=0.393  Sum_probs=119.5

Q ss_pred             CccccccceEEEEEEEEEECC-eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            4 SVWGKATIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         4 ~~~~~~Tig~~~~~~~~~~~~-~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      ...|.||+|.++....+.+++ ..+.+++|||||++.|..++..+++++|++|+|||++++.+|+.+..|+..+....  
T Consensus        32 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~  111 (178)
T 2hxs_A           32 GKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEE  111 (178)
T ss_dssp             THHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHH
T ss_pred             CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcc
Confidence            456789999999999998876 67999999999999999999999999999999999999999999999999887753  


Q ss_pred             -CCCC-EEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029854           81 -ENIP-IVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus        81 -~~~p-~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                       ...| +++|+||+|+.+ +.+.. +...++..++++++++||++|.|++++|.++++.+.+..
T Consensus       112 ~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  175 (178)
T 2hxs_A          112 SETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIK  175 (178)
T ss_dssp             HTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHTTCC
T ss_pred             cCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence             2556 899999999975 33443 355788888999999999999999999999999987654

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.93  E-value=7.3e-25  Score=159.75  Aligned_cols=135  Identities=27%  Similarity=0.512  Sum_probs=113.3

Q ss_pred             ccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCC
Q 029854            5 VWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENI   83 (186)
Q Consensus         5 ~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~~~   83 (186)
                      ..+.||+|.++....+.+++..+.+++|||||++.|..++..+++++|++|+|||++++.+++.+..|+..+.... .+.
T Consensus        38 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~  117 (180)
T 2g6b_A           38 GTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDV  117 (180)
T ss_dssp             CCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC
T ss_pred             CCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC
Confidence            4688999999999888899999999999999999999999999999999999999999999999999999998876 589


Q ss_pred             CEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           84 PIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        84 p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      |+++|+||+|+.+ +.+.. +...++..++++++++||++|.|++++|.++.+.+.+.
T Consensus       118 piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  175 (180)
T 2g6b_A          118 ALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRR  175 (180)
T ss_dssp             EEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred             cEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            9999999999975 33333 34578888899999999999999999999999998754

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.93  E-value=6.5e-25  Score=162.23  Aligned_cols=138  Identities=29%  Similarity=0.484  Sum_probs=124.1

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...+.||++.++....+.+++..+.+.||||||++.+..++..+++.+|++|+|||++++.+|+.+..|+..+.... .
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~  120 (196)
T 3tkl_A           41 YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE  120 (196)
T ss_dssp             CCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT
T ss_pred             CCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC
Confidence            456789999999999999999999999999999999999999999999999999999999999999999999998875 5


Q ss_pred             CCCEEEEEeCCCCCCc-ccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029854           82 NIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                      +.|+++|+||+|+.+. .+.. ....++..++++++++||++|.|++++|.+|++.+....
T Consensus       121 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~  181 (196)
T 3tkl_A          121 NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM  181 (196)
T ss_dssp             TCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            7899999999999753 3333 355788899999999999999999999999999997654

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.93  E-value=5.7e-25  Score=162.66  Aligned_cols=135  Identities=20%  Similarity=0.269  Sum_probs=118.2

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhcC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCE   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~~   81 (186)
                      +...|.||++..+ ...+.+++..+.+.||||+|+++|..++..+++++|++|+|||++++.+|..+. .|+..+....+
T Consensus        43 ~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  121 (194)
T 2atx_A           43 FPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP  121 (194)
T ss_dssp             CCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST
T ss_pred             CCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC
Confidence            4567899999776 456778888999999999999999999999999999999999999999999987 89999988878


Q ss_pred             CCCEEEEEeCCCCCCc-------------ccCh-HHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           82 NIPIVLCGNKVDVKNR-------------QVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~-------------~~~~-~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      +.|+++|+||+|+.+.             .+.. +...+++.+++ +++++||++|.||+++|.++++.+..
T Consensus       122 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          122 NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence            8999999999999752             3333 35578888887 89999999999999999999988753

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.93  E-value=7.8e-25  Score=163.49  Aligned_cols=138  Identities=29%  Similarity=0.473  Sum_probs=123.5

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...|.||+|.++....+.+++..+.+.||||||+++|..++..+++++|++|+|||++++.+|+.+..|+..+.... .
T Consensus        33 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~  112 (206)
T 2bcg_Y           33 YTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATS  112 (206)
T ss_dssp             CCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT
T ss_pred             CCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC
Confidence            456789999999999999999999999999999999999999999999999999999999999999999999998775 5


Q ss_pred             CCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029854           82 NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                      +.|+++|+||+|+.+ +.+.. ....++..++++++++||++|.||+++|.++.+.+.+..
T Consensus       113 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~  173 (206)
T 2bcg_Y          113 TVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESM  173 (206)
T ss_dssp             TCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            799999999999975 33443 355788888999999999999999999999999987653

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.93  E-value=3.9e-25  Score=163.38  Aligned_cols=136  Identities=32%  Similarity=0.535  Sum_probs=117.3

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...+.||+|.++....+.+++..+.++||||+|++.|..++..+++++|++|+|||++++.+++.+..|+..+.... .
T Consensus        46 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~  125 (191)
T 2a5j_A           46 FQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSS  125 (191)
T ss_dssp             CCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT
T ss_pred             CCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence            445678999999999999999999999999999999999999999999999999999999999999999999998764 5


Q ss_pred             CCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           82 NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      +.|+++|+||+|+.+ +.+.. +...++..++++++++||++|.||+++|.+|++.+.+
T Consensus       126 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  184 (191)
T 2a5j_A          126 NMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR  184 (191)
T ss_dssp             TCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            899999999999975 33433 3557888889999999999999999999999998864

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.93  E-value=1.5e-24  Score=159.89  Aligned_cols=136  Identities=24%  Similarity=0.482  Sum_probs=121.8

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...+.||+|.++....+.+++..+.+.||||+|++++..++..+++++|++|+|||++++.+++.+..|+..+.... .
T Consensus        47 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~  126 (189)
T 2gf9_A           47 FTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWD  126 (189)
T ss_dssp             CCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT
T ss_pred             CCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence            456789999999998888889999999999999999999999999999999999999999999999999999998875 5


Q ss_pred             CCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           82 NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      +.|+++|+||+|+.+ +.+.. +...++..++++++++||++|.|++++|.++++.+.+
T Consensus       127 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~  185 (189)
T 2gf9_A          127 NAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICE  185 (189)
T ss_dssp             TCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            799999999999975 33333 3567888889999999999999999999999998864

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.93  E-value=5.3e-25  Score=161.75  Aligned_cols=135  Identities=21%  Similarity=0.327  Sum_probs=117.6

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhH-HHHHHHHHhhcC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i-~~~~~~~~~~~~   81 (186)
                      +...|.||++.++. ..+.+++..+.+.||||||++.|..++..++++++++|+|||++++.+|+.+ ..|+..+.+..+
T Consensus        32 ~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~  110 (184)
T 1m7b_A           32 FPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP  110 (184)
T ss_dssp             CCSSCCCCSEEEEE-EEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT
T ss_pred             CCCCCCCccceeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC
Confidence            45678999998874 5677889999999999999999999999999999999999999999999998 789999988778


Q ss_pred             CCCEEEEEeCCCCCC-------------cccChH-HHHHHHHcC-CcEEEeccC-CCCCchHHHHHHHHHHhC
Q 029854           82 NIPIVLCGNKVDVKN-------------RQVKAK-QVTFHRKKN-LQYYEISAK-SNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-------------~~~~~~-~~~~~~~~~-~~~~~~Sa~-~~~gi~~l~~~l~~~i~~  138 (186)
                      +.|+++|+||+|+.+             +.+..+ ...+++.++ .+++++||+ +|.||+++|..+++.+..
T Consensus       111 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          111 NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence            899999999999974             234333 557888877 699999999 689999999999998764

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.93  E-value=1.1e-24  Score=159.40  Aligned_cols=135  Identities=30%  Similarity=0.392  Sum_probs=119.8

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      +...+.||++..+ ...+.+++..+.+.+|||+|++.|..++..+++++|++|+|||++++.+|+.+..|+..+....  
T Consensus        43 ~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  121 (183)
T 3kkq_A           43 FVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR  121 (183)
T ss_dssp             CCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS
T ss_pred             CCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence            4567899999888 6778889999999999999999999999999999999999999999999999999999987753  


Q ss_pred             CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccC-CCCCchHHHHHHHHHHhC
Q 029854           81 ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAK-SNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~-~~~gi~~l~~~l~~~i~~  138 (186)
                      .+.|+++|+||+|+.+ +.+..+ ...++..++++++++||+ +|.|++++|.++++.+.+
T Consensus       122 ~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~~  182 (183)
T 3kkq_A          122 ESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ  182 (183)
T ss_dssp             SCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence            6799999999999975 444444 568888999999999999 999999999999988754

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.93  E-value=7.4e-25  Score=157.87  Aligned_cols=135  Identities=32%  Similarity=0.560  Sum_probs=120.0

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...+.||+|.++....+.+++..+.+.+|||||++.|..++..+++++|++|+|||++++.+++.+..|+..+.... +
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  110 (170)
T 1r2q_A           31 FHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP  110 (170)
T ss_dssp             CCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT
T ss_pred             CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence            345688999999999999999999999999999999999999999999999999999999999999999999988764 6


Q ss_pred             CCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854           82 NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                      +.|+++|+||+|+.+ +.... +...++..++++++++||++|.|++++|.+|.+.+.
T Consensus       111 ~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~~  168 (170)
T 1r2q_A          111 NIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP  168 (170)
T ss_dssp             TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred             CCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence            899999999999974 33333 355788888999999999999999999999998764

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.93  E-value=7.4e-25  Score=159.27  Aligned_cols=136  Identities=34%  Similarity=0.517  Sum_probs=121.3

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...+.||+|.++....+.+++..+.+.||||||++.+..++..+++++|++|+|||++++.+++.+..|+..+.... .
T Consensus        40 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  119 (179)
T 1z0f_A           40 FMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP  119 (179)
T ss_dssp             CCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT
T ss_pred             CCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCC
Confidence            456788999999999999999999999999999999999999999999999999999999999999999999988876 6


Q ss_pred             CCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           82 NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      +.|+++|+||+|+.+ +.+.. +..+++..++++++++||++|.|++++|.++++.+.+
T Consensus       120 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  178 (179)
T 1z0f_A          120 NTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ  178 (179)
T ss_dssp             TCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             CCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence            899999999999974 33333 4567888889999999999999999999999988754

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.93  E-value=4.9e-25  Score=158.82  Aligned_cols=135  Identities=31%  Similarity=0.532  Sum_probs=119.8

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...+.||+|.++....+.+++..+.+.+|||||++.+..++..+++++|++|+|||++++.++..+..|+..+.... .
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  107 (170)
T 1ek0_A           28 FAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASK  107 (170)
T ss_dssp             CCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT
T ss_pred             CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCC
Confidence            455788999999999999999999999999999999999999999999999999999999999999999999988775 6


Q ss_pred             CCCEEEEEeCCCCCC----cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854           82 NIPIVLCGNKVDVKN----RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~----~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                      +.|+++|+||+|+.+    +.+..+ ...++..++++++++||++|.|++++|.++.+.+.
T Consensus       108 ~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  168 (170)
T 1ek0_A          108 DIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP  168 (170)
T ss_dssp             TCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTSC
T ss_pred             CCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence            899999999999974    333333 45778888999999999999999999999987664

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.93  E-value=8.9e-25  Score=161.24  Aligned_cols=134  Identities=17%  Similarity=0.239  Sum_probs=114.0

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      +...|.||+|..+ ...+.+++..+.++||||+|+++|..+ ..++++++++|+|||++++.+|+.+..|+..+....  
T Consensus        46 ~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~  123 (187)
T 3c5c_A           46 FISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKE  123 (187)
T ss_dssp             CCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhc
Confidence            4567899999887 456778999999999999999998875 679999999999999999999999999999988764  


Q ss_pred             --CCCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEecc-CCCCCchHHHHHHHHHHhC
Q 029854           81 --ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISA-KSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        81 --~~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa-~~~~gi~~l~~~l~~~i~~  138 (186)
                        .+.|+++|+||+|+.+ +.+.. +..+++..++++++++|| ++|.||+++|..+++.+.+
T Consensus       124 ~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~~  186 (187)
T 3c5c_A          124 TQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARR  186 (187)
T ss_dssp             HCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHHHC
T ss_pred             cCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHHHHhh
Confidence              6899999999999975 44443 356888899999999999 8999999999999988753

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.93  E-value=7.5e-25  Score=159.81  Aligned_cols=137  Identities=32%  Similarity=0.536  Sum_probs=120.8

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...+.||+|.++....+.+++..+.+.||||||+++|..++..+++++|++|+|||++++.+|+.+..|+..+.... +
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  116 (181)
T 2efe_B           37 FVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNP  116 (181)
T ss_dssp             CTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT
T ss_pred             CCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence            455678999999999999999999999999999999999999999999999999999999999999999999998875 5


Q ss_pred             CCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           82 NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      +.|+++|+||+|+.+ +.+.. +...++..++++++++||++|.|++++|.+|++.+...
T Consensus       117 ~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~  176 (181)
T 2efe_B          117 NMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRV  176 (181)
T ss_dssp             TCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHTCC--
T ss_pred             CCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            899999999999974 33333 35578888899999999999999999999999887654

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.93  E-value=1e-24  Score=162.39  Aligned_cols=137  Identities=25%  Similarity=0.493  Sum_probs=122.5

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...+.||+|.++....+.+++..+.+.||||||++++..++..+++++|++|+|||++++.+|+.+..|+..+.... .
T Consensus        33 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~  112 (203)
T 1zbd_A           33 FTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD  112 (203)
T ss_dssp             CCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC
Confidence            456789999999999999999999999999999999999999999999999999999999999999999999998875 5


Q ss_pred             CCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           82 NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      +.|+++|+||+|+.+ +.+.. ....++..++++++++||++|.|++++|.+|++.+.+.
T Consensus       113 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  172 (203)
T 1zbd_A          113 NAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK  172 (203)
T ss_dssp             SCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            799999999999975 33433 35578888899999999999999999999999988654

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.93  E-value=1.5e-24  Score=161.26  Aligned_cols=136  Identities=21%  Similarity=0.280  Sum_probs=114.0

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhcC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCE   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~~   81 (186)
                      +...|.||++..+ ...+.+++..+.++||||+|+++|..++..+++++|++|+|||++++.+|..+. .|+..+....+
T Consensus        45 ~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  123 (201)
T 2q3h_A           45 YPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP  123 (201)
T ss_dssp             ------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS
T ss_pred             CCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC
Confidence            3467889998766 456778999999999999999999999999999999999999999999999986 79999988878


Q ss_pred             CCCEEEEEeCCCCCC-------------cccCh-HHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           82 NIPIVLCGNKVDVKN-------------RQVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-------------~~~~~-~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      +.|+++|+||+|+.+             +.+.. +...++..++. +++++||++|.||+++|.++++.+.+.
T Consensus       124 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~  196 (201)
T 2q3h_A          124 KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQY  196 (201)
T ss_dssp             SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence            999999999999974             22333 34577788887 899999999999999999999988643

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.93  E-value=1.7e-24  Score=161.45  Aligned_cols=137  Identities=36%  Similarity=0.610  Sum_probs=121.2

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      +...|.||+|.++....+.+++..+.+.||||||++.+..++..+++++|++|+|||++++.+|..+..|+..+....  
T Consensus        33 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  112 (207)
T 1vg8_A           33 FSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASP  112 (207)
T ss_dssp             CCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC
T ss_pred             CCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhccc
Confidence            456789999999999999999999999999999999999999999999999999999999999999999999887764  


Q ss_pred             ---CCCCEEEEEeCCCCCCcccChH-HHHHHH-HcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           81 ---ENIPIVLCGNKVDVKNRQVKAK-QVTFHR-KKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        81 ---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                         .+.|+++|+||+|+.++....+ ...++. ..+++++++||++|.|++++|.+|++.+...
T Consensus       113 ~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~  176 (207)
T 1vg8_A          113 RDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ  176 (207)
T ss_dssp             SSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             ccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence               4789999999999986555444 446666 5678999999999999999999999998754

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.93  E-value=5.4e-25  Score=165.03  Aligned_cols=137  Identities=24%  Similarity=0.389  Sum_probs=117.1

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhcC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCE   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~~   81 (186)
                      +...|.||+|..+ ...+.+++..+.++||||||+++|..++..+++++|++|+|||++++.+|+.+. .|+..+....+
T Consensus        34 ~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~  112 (212)
T 2j0v_A           34 FPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP  112 (212)
T ss_dssp             CCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT
T ss_pred             CCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC
Confidence            4567899999776 456778899999999999999999999999999999999999999999999986 89999988877


Q ss_pred             CCCEEEEEeCCCCCCccc---------C-hHHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029854           82 NIPIVLCGNKVDVKNRQV---------K-AKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~~~---------~-~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                      +.|++||+||+|+.+...         . .+...++..++. +++++||++|.||+++|.++++.+.+..
T Consensus       113 ~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~  182 (212)
T 2j0v_A          113 NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP  182 (212)
T ss_dssp             TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC-
T ss_pred             CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhhhh
Confidence            899999999999975321         2 335577888886 8999999999999999999999998764

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.93  E-value=1.1e-24  Score=161.96  Aligned_cols=136  Identities=22%  Similarity=0.264  Sum_probs=119.0

Q ss_pred             ccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCC-ccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--C
Q 029854            5 VWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--E   81 (186)
Q Consensus         5 ~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~-~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~   81 (186)
                      ..+.||++.++....+.+++..+.+.+|||+|++++.. ++..++++++++|+|||++++.+|+.+..|+..+....  .
T Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~  129 (195)
T 3cbq_A           50 SAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH  129 (195)
T ss_dssp             GGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTS
T ss_pred             ccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC
Confidence            35678888888888889999999999999999998765 78888999999999999999999999999999988765  4


Q ss_pred             CCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029854           82 NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                      +.|+++|+||+|+.+ +.+.. +...++..++++++++||++|.||+++|.++++.+....
T Consensus       130 ~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~  190 (195)
T 3cbq_A          130 DLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRR  190 (195)
T ss_dssp             CCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHHhc
Confidence            799999999999975 44443 355788888999999999999999999999999987543

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.93  E-value=9e-25  Score=165.41  Aligned_cols=139  Identities=29%  Similarity=0.490  Sum_probs=114.9

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...+.||+|.++....+.+++..+.+.||||||+++|..++..++++++++|+|||++++.+|+.+..|+..+.... .
T Consensus        38 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~  117 (223)
T 3cpj_B           38 FNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADD  117 (223)
T ss_dssp             CCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC-
T ss_pred             CCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC
Confidence            456788999999999999999999999999999999999999999999999999999999999999999999998764 5


Q ss_pred             CCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCC
Q 029854           82 NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN  141 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  141 (186)
                      +.|++||+||+|+.+ +.+.. +...++..++++++++||++|.||+++|.+|++.+.+...
T Consensus       118 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  179 (223)
T 3cpj_B          118 NVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVS  179 (223)
T ss_dssp             -CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHHHTTCC-
T ss_pred             CCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            789999999999975 33443 3557888889999999999999999999999999987543

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.93  E-value=2.1e-24  Score=161.55  Aligned_cols=137  Identities=28%  Similarity=0.474  Sum_probs=122.6

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...+.||+|.++....+.+++..+.+.||||||++.|..++..+++++|++|+|||++++.+|+.+..|+..+.... .
T Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~  124 (213)
T 3cph_A           45 FNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAND  124 (213)
T ss_dssp             CCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTT
T ss_pred             CCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence            456789999999999999999999999999999999999999999999999999999999999999999999988775 4


Q ss_pred             CCCEEEEEeCCCCCCcccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           82 NIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      +.|+++|+||+|+..+.+..+ ...++..++++++++||++|.||+++|.+|.+.+.+.
T Consensus       125 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  183 (213)
T 3cph_A          125 EAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK  183 (213)
T ss_dssp             CSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            789999999999965555444 4578888899999999999999999999999988654

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.93  E-value=1.4e-24  Score=159.11  Aligned_cols=137  Identities=33%  Similarity=0.548  Sum_probs=122.2

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...+.||+|.++....+.+++..+.+.||||||++.+..++..+++++|++|+|||++++.+++.+..|+..+.... .
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  114 (186)
T 2bme_A           35 FKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQ  114 (186)
T ss_dssp             CCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT
T ss_pred             CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC
Confidence            456788999999999999999999999999999999999999999999999999999999999999999999887764 6


Q ss_pred             CCCEEEEEeCCCCCC-cccC-hHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           82 NIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      +.|+++|+||+|+.+ +.+. .+...++...+++++++||++|.|++++|.++++.+...
T Consensus       115 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  174 (186)
T 2bme_A          115 NIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNK  174 (186)
T ss_dssp             TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence            899999999999974 3343 335578888899999999999999999999999988753

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.93  E-value=9.5e-25  Score=163.67  Aligned_cols=135  Identities=21%  Similarity=0.327  Sum_probs=117.3

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhH-HHHHHHHHhhcC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i-~~~~~~~~~~~~   81 (186)
                      +...|.||++.++. +.+.+++..+.+.||||+|+++|..++..++++++++|+|||++++.+|+.+ ..|+..+.+..+
T Consensus        53 ~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~  131 (205)
T 1gwn_A           53 FPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP  131 (205)
T ss_dssp             CCSSCCCCSEEEEE-EEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT
T ss_pred             CCCCcCCccceeEE-EEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC
Confidence            45678999998874 5677888999999999999999999999999999999999999999999998 789999988878


Q ss_pred             CCCEEEEEeCCCCCC-------------cccChH-HHHHHHHcC-CcEEEeccC-CCCCchHHHHHHHHHHhC
Q 029854           82 NIPIVLCGNKVDVKN-------------RQVKAK-QVTFHRKKN-LQYYEISAK-SNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-------------~~~~~~-~~~~~~~~~-~~~~~~Sa~-~~~gi~~l~~~l~~~i~~  138 (186)
                      +.|+++|+||+|+.+             +.+..+ ...+++.++ .++++|||+ +|.||+++|..+++.+..
T Consensus       132 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          132 NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence            899999999999974             233333 557888877 699999999 689999999999988764

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.93  E-value=9.8e-25  Score=161.45  Aligned_cols=137  Identities=28%  Similarity=0.416  Sum_probs=121.1

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...+.||+|.++....+.+++..+.+.||||||++++..++..+++++|++|+|||++++.+++.+..|+..+.... .
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~  127 (192)
T 2fg5_A           48 FDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPE  127 (192)
T ss_dssp             CCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCT
T ss_pred             CCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC
Confidence            345789999999999999889999999999999999999999999999999999999999999999999999998875 5


Q ss_pred             CCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           82 NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      +.|+++|+||+|+.+ +.+.. +..+++...+++++++||++|.|++++|.+|.+.+.+.
T Consensus       128 ~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  187 (192)
T 2fg5_A          128 NIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPL  187 (192)
T ss_dssp             TCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHTCC--
T ss_pred             CCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHHhh
Confidence            799999999999975 33433 45678888899999999999999999999999887544

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.92  E-value=9.4e-25  Score=162.41  Aligned_cols=136  Identities=26%  Similarity=0.469  Sum_probs=110.5

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...+.||+|.++....+.+++..+.++||||||++.|..++..+++++|++|+|||++++.+++.+..|+..+.... .
T Consensus        53 ~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~  132 (199)
T 2p5s_A           53 FRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHE  132 (199)
T ss_dssp             CC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC--
T ss_pred             CCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCC
Confidence            345688999999999999999999999999999999999999999999999999999999999999999999888765 5


Q ss_pred             CCCEEEEEeCCCCCC-------cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           82 NIPIVLCGNKVDVKN-------RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-------~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      +.|+++|+||+|+.+       +.+..+ ...++..++++++++||++|.||+++|.+|++.+.+
T Consensus       133 ~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          133 TVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKK  197 (199)
T ss_dssp             -CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHTC
T ss_pred             CCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence            799999999999952       333333 457888889999999999999999999999998864

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.92  E-value=2.5e-24  Score=155.21  Aligned_cols=135  Identities=27%  Similarity=0.466  Sum_probs=120.5

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...+.||+|.++....+.+++..+.+.+|||||++++..++..+++++|++|+|||++++.+++.+..|+..+.... +
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~  110 (170)
T 1z0j_A           31 FDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP  110 (170)
T ss_dssp             CCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT
T ss_pred             CCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC
Confidence            355789999999999999999999999999999999999999999999999999999999999999999999998874 6


Q ss_pred             CCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854           82 NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                      ..|+++|+||+|+.+ +.+..+ ...++...+++++++||++|.|++++|.++.+.+.
T Consensus       111 ~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i~  168 (170)
T 1z0j_A          111 SIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP  168 (170)
T ss_dssp             TSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred             CCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHh
Confidence            899999999999975 334333 55778888999999999999999999999998774

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.92  E-value=3e-24  Score=157.12  Aligned_cols=137  Identities=23%  Similarity=0.398  Sum_probs=118.7

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhcC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCE   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~~   81 (186)
                      +...|.||++..+ ...+.+++..+.+++|||||+++|..++..+++++|++|+|||++++.+|..+. .|+..+....+
T Consensus        30 ~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  108 (186)
T 1mh1_A           30 FPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP  108 (186)
T ss_dssp             CCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST
T ss_pred             CCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC
Confidence            4567889998766 456778999999999999999999999999999999999999999999999987 79999988777


Q ss_pred             CCCEEEEEeCCCCCCc-------------ccCh-HHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029854           82 NIPIVLCGNKVDVKNR-------------QVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~-------------~~~~-~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                      +.|+++|+||+|+.+.             .+.. +...++...+. +++++||++|.|++++|.++.+.+...+
T Consensus       109 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~  182 (186)
T 1mh1_A          109 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP  182 (186)
T ss_dssp             TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhccc
Confidence            8999999999999642             2232 34567788887 9999999999999999999999997654

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.92  E-value=2.1e-24  Score=159.46  Aligned_cols=136  Identities=29%  Similarity=0.485  Sum_probs=121.2

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...+.||+|.++....+.+++..+.+.||||||+++|..++..+++++|++|+|||++++.++..+..|+..+.... .
T Consensus        50 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~  129 (193)
T 2oil_A           50 FSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEA  129 (193)
T ss_dssp             CCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCT
T ss_pred             CCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence            455788999999999999999999999999999999999999999999999999999999999999999999988764 5


Q ss_pred             CCCEEEEEeCCCCCC-cccC-hHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           82 NIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      +.|+++|+||+|+.+ +.+. .+...++...+++++++||++|.|++++|.+|++.+.+
T Consensus       130 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  188 (193)
T 2oil_A          130 TIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFA  188 (193)
T ss_dssp             TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            799999999999975 3333 33557888889999999999999999999999988864

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.92  E-value=1.1e-24  Score=162.31  Aligned_cols=137  Identities=32%  Similarity=0.552  Sum_probs=114.2

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...+.||+|.++....+.+++..+.+.||||||+++|..++..+++++|++|+|||++++.+++.+..|+..+.... .
T Consensus        50 ~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  129 (200)
T 2o52_A           50 FKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASP  129 (200)
T ss_dssp             ----------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCT
T ss_pred             CCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC
Confidence            345688999999999999999999999999999999999999999999999999999999999999999999987764 5


Q ss_pred             CCCEEEEEeCCCCCC-cccC-hHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           82 NIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      +.|+++|+||+|+.+ +.+. .+...++...+++++++||++|.||+++|.++++.+...
T Consensus       130 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~  189 (200)
T 2o52_A          130 NIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNK  189 (200)
T ss_dssp             TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            799999999999974 3343 345678888899999999999999999999999988653

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.92  E-value=9.8e-25  Score=161.56  Aligned_cols=136  Identities=29%  Similarity=0.571  Sum_probs=115.9

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...+.||+|.++....+.+++..+.+.||||+|++++..++..+++++|++|+|||++++.+++.+..|+..+.... .
T Consensus        51 ~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~  130 (192)
T 2il1_A           51 FCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASE  130 (192)
T ss_dssp             ------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT
T ss_pred             CCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC
Confidence            345688999999999999999999999999999999999999999999999999999999999999999999888775 4


Q ss_pred             CCCEEEEEeCCCCCC-cccChH-HHHHHHHc-CCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           82 NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      +.|+++|+||+|+.+ +.+..+ ...+++.. +++++++||++|.||+++|.+|.+.+.+
T Consensus       131 ~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~  190 (192)
T 2il1_A          131 DAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK  190 (192)
T ss_dssp             TCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            799999999999975 344433 45677764 7899999999999999999999998864

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.92  E-value=2e-24  Score=156.98  Aligned_cols=136  Identities=29%  Similarity=0.507  Sum_probs=120.1

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...+.||+|.++....+.+++..+.+.+|||||++.+..++..+++++|++|+|||++++.++..+..|+..+.... .
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~  118 (179)
T 2y8e_A           39 FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGS  118 (179)
T ss_dssp             CCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT
T ss_pred             CCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence            456789999999999999999999999999999999999999999999999999999999999999999999987764 5


Q ss_pred             CCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           82 NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      +.|+++|+||+|+.+ +.+.. +...++...+++++++||++|.|++++|.++.+.+.+
T Consensus       119 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  177 (179)
T 2y8e_A          119 DVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG  177 (179)
T ss_dssp             SSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHTCC-
T ss_pred             CCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence            799999999999974 33333 3457778889999999999999999999999987643

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.92  E-value=4.9e-25  Score=164.16  Aligned_cols=136  Identities=23%  Similarity=0.335  Sum_probs=100.5

Q ss_pred             CCccccccceEEEEEEEEEECCe--EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCG--KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~--~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~   80 (186)
                      +...|.||+|.++....+.+++.  .+.+.||||||++.|..++..+++++|++|+|||++++.+|+.+..|+..+....
T Consensus        47 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~  126 (208)
T 2yc2_C           47 FLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSAR  126 (208)
T ss_dssp             --------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHC
T ss_pred             ccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhh
Confidence            45678999999999999998887  8999999999999999999999999999999999999999999999999998875


Q ss_pred             C----CCCEEEEEeCCCCCC--cccC-hHHHHHHHHcCCcEEEeccCC-CCCchHHHHHHHHHHhC
Q 029854           81 E----NIPIVLCGNKVDVKN--RQVK-AKQVTFHRKKNLQYYEISAKS-NYNFEKPFLYLARKLAG  138 (186)
Q Consensus        81 ~----~~p~ilv~nK~Dl~~--~~~~-~~~~~~~~~~~~~~~~~Sa~~-~~gi~~l~~~l~~~i~~  138 (186)
                      .    +.|+++|+||+|+.+  +.+. .+...++..++++++++||++ |.|++++|.++++.+.+
T Consensus       127 ~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~  192 (208)
T 2yc2_C          127 PDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYR  192 (208)
T ss_dssp             SCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHHHHHH
T ss_pred             cccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHHHH
Confidence            4    799999999999976  3444 345688888999999999999 99999999999998864

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.92  E-value=4.4e-24  Score=159.09  Aligned_cols=135  Identities=24%  Similarity=0.390  Sum_probs=117.4

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhH-HHHHHHHHhhcC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i-~~~~~~~~~~~~   81 (186)
                      +...|.||++.++.. .+.+++..+.+.||||||+++|..++..+++++|++|+|||++++.+|+.+ ..|+..+....+
T Consensus        50 ~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  128 (201)
T 2gco_A           50 FPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP  128 (201)
T ss_dssp             CCSSCCCSSCCCCEE-EEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST
T ss_pred             CCcccCCcccceEEE-EEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC
Confidence            456789999988864 467889999999999999999999999999999999999999999999998 689998888777


Q ss_pred             CCCEEEEEeCCCCCCc-------------ccCh-HHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           82 NIPIVLCGNKVDVKNR-------------QVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~-------------~~~~-~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      +.|+++|+||+|+.+.             .+.. +...++...+. +++++||++|.||+++|.++.+.+.+
T Consensus       129 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          129 NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             TCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             CCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence            8999999999999753             2333 34577788887 89999999999999999999988754

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.92  E-value=1.6e-24  Score=159.65  Aligned_cols=136  Identities=29%  Similarity=0.521  Sum_probs=117.4

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccC-CccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-   80 (186)
                      +...+.||+|.++....+.+++..+.+.||||||+++|. .++..+++++|++|+|||++++.+|+.+..|+..+.... 
T Consensus        45 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~  124 (189)
T 1z06_A           45 FPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL  124 (189)
T ss_dssp             CCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC
T ss_pred             CCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC
Confidence            456788999999999999999999999999999999998 889999999999999999999999999999999998874 


Q ss_pred             -CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCC---CCchHHHHHHHHHHhC
Q 029854           81 -ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSN---YNFEKPFLYLARKLAG  138 (186)
Q Consensus        81 -~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~---~gi~~l~~~l~~~i~~  138 (186)
                       .+.|+++|+||+|+.+ +.+..+ ...++..++++++++||++|   .||+++|.+|++.+.+
T Consensus       125 ~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~~  188 (189)
T 1z06_A          125 ANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKS  188 (189)
T ss_dssp             CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC-----
T ss_pred             CCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHHhh
Confidence             5799999999999975 334333 55788888999999999999   9999999999887643

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.92  E-value=3.5e-24  Score=155.98  Aligned_cols=137  Identities=28%  Similarity=0.419  Sum_probs=119.4

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      +...+.||++..+. ..+.+++..+.+.||||||+++|..++..++++++++++|||++++.++..+..|+..+.+..  
T Consensus        34 ~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  112 (181)
T 2fn4_A           34 FVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDR  112 (181)
T ss_dssp             CCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTS
T ss_pred             CccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC
Confidence            45678999998887 677889999999999999999999999999999999999999999999999999999885543  


Q ss_pred             CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029854           81 ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                      .+.|+++|+||+|+.+ +.+..+ ...++...+++++++||++|.|++++|++|.+.+.+..
T Consensus       113 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~  174 (181)
T 2fn4_A          113 DDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ  174 (181)
T ss_dssp             SCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence            5799999999999975 344333 55778888999999999999999999999999987543

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=1.8e-25  Score=165.23  Aligned_cols=137  Identities=23%  Similarity=0.481  Sum_probs=122.8

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...+.||+|.++....+.+++..+.+.||||+|++.|..++..+++++|++|+|||++++.+|+.+..|+..+.... .
T Consensus        48 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~  127 (191)
T 3dz8_A           48 FTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWD  127 (191)
T ss_dssp             TCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCT
T ss_pred             CCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC
Confidence            456788999999999999999999999999999999999999999999999999999999999999999999998876 6


Q ss_pred             CCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           82 NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      +.|+++|+||+|+.+ +.+..+ ...++..++++++++||++|.||+++|.++++.+.+.
T Consensus       128 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  187 (191)
T 3dz8_A          128 NAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDK  187 (191)
T ss_dssp             TCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            899999999999975 333333 5578888899999999999999999999999988654

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.92  E-value=3.4e-24  Score=154.64  Aligned_cols=135  Identities=21%  Similarity=0.261  Sum_probs=106.0

Q ss_pred             CccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCC-ccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC-
Q 029854            4 SVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-   81 (186)
Q Consensus         4 ~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~-~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~-   81 (186)
                      ...+.+|.+.++....+.+++..+.+.+|||+|++++.. ++..+++++|++++|||++++.+|+.+..|+..+..... 
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  107 (169)
T 3q85_A           28 DHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH  107 (169)
T ss_dssp             ----------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTT
T ss_pred             cccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccC
Confidence            345567777888888999999999999999999999876 788889999999999999999999999999999988764 


Q ss_pred             -CCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           82 -NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        82 -~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                       +.|+++|+||+|+.+ +.+..+ ...++..++++++++||++|.|++++|.++++.+..
T Consensus       108 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~  167 (169)
T 3q85_A          108 HDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL  167 (169)
T ss_dssp             SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHHHHh
Confidence             899999999999974 444444 557888999999999999999999999999998754

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.92  E-value=5.4e-24  Score=157.55  Aligned_cols=135  Identities=30%  Similarity=0.450  Sum_probs=117.6

Q ss_pred             CCccccccceEEEEEEEEEECCeE-------------------------------------EEEEEEeCCCccccCCccc
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGK-------------------------------------IRFYCWDTAGQEKFGGLRD   45 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~-------------------------------------~~l~l~Dt~G~~~~~~~~~   45 (186)
                      +...+.||+|.++....+.+++..                                     +.+.||||||++.|..++.
T Consensus        32 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~  111 (208)
T 3clv_A           32 FHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVP  111 (208)
T ss_dssp             CCSSCCCCCSCEEEEEEEETTC-------------------------------CCCTTTCEEEEEEEECTTGGGCTTTHH
T ss_pred             CCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccccCccceeEEEEEECCCcHHHHHHHH
Confidence            456789999999999888887766                                     8999999999999999999


Q ss_pred             cccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccCh-HHHHHHHHcCCcEEEeccCCCCC
Q 029854           46 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYN  124 (186)
Q Consensus        46 ~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~Sa~~~~g  124 (186)
                      .+++.+|++|+|||++++.++..+..|+..+..... .|+++|+||+|+..+.... +..+++..++++++++||++|.|
T Consensus       112 ~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~-~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  190 (208)
T 3clv_A          112 LYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN-YIIILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTN  190 (208)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-CEEEEEEECTTCC-CCSCHHHHHHHHHHTTCEEEEECTTTCTT
T ss_pred             HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC-CcEEEEEECCCcccccCCHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            999999999999999999999999999999987654 9999999999954445543 45678888999999999999999


Q ss_pred             chHHHHHHHHHHhC
Q 029854          125 FEKPFLYLARKLAG  138 (186)
Q Consensus       125 i~~l~~~l~~~i~~  138 (186)
                      ++++|.++.+.+.+
T Consensus       191 i~~l~~~l~~~~~~  204 (208)
T 3clv_A          191 IKNIFYMLAEEIYK  204 (208)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988754

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.92  E-value=3.5e-24  Score=157.58  Aligned_cols=137  Identities=28%  Similarity=0.494  Sum_probs=120.1

Q ss_pred             CCccccccceEEEE-EEEEEECCe---------EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHH
Q 029854            3 VSVWGKATIGVEVH-PLDFFTNCG---------KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTW   72 (186)
Q Consensus         3 ~~~~~~~Tig~~~~-~~~~~~~~~---------~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~   72 (186)
                      +...+.||+|.++. .+.+.+++.         .+.+.||||||++.+..++..+++++|++|+|||++++.++..+..|
T Consensus        36 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~  115 (195)
T 3bc1_A           36 FNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNW  115 (195)
T ss_dssp             CCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHH
T ss_pred             CCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHH
Confidence            45678999999998 677777776         89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhc--CCCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           73 HRDLCRVC--ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        73 ~~~~~~~~--~~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      +..+....  .+.|+++|+||+|+.+ +.+.. ...+++..++++++++||++|.|++++|.+|.+.+.+.
T Consensus       116 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~  186 (195)
T 3bc1_A          116 ISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKR  186 (195)
T ss_dssp             HHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            99998775  5899999999999975 33433 35578888899999999999999999999999988643

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.92  E-value=2.3e-24  Score=160.57  Aligned_cols=138  Identities=21%  Similarity=0.249  Sum_probs=115.5

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      +...|.||++..+ ...+.+++..+.+.||||||++.+..++..+++++|++|+|||++++.+|+.+..|+..+....  
T Consensus        49 ~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~  127 (201)
T 3oes_A           49 FSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGK  127 (201)
T ss_dssp             CCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC----
T ss_pred             CCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC
Confidence            4567889999888 5677778888999999999999999999999999999999999999999999999999987763  


Q ss_pred             CCCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCC
Q 029854           81 ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN  141 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  141 (186)
                      .+.|+++|+||+|+.+ +.+.. +...++..++++++++||++|.|++++|.+|++.+.+...
T Consensus       128 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~~~  190 (201)
T 3oes_A          128 TRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVEN  190 (201)
T ss_dssp             -CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHHC--
T ss_pred             CCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence            4789999999999974 33443 3557888899999999999999999999999999987643

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.92  E-value=3.5e-24  Score=161.26  Aligned_cols=137  Identities=23%  Similarity=0.389  Sum_probs=100.7

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhcC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCE   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~~   81 (186)
                      +...|.||++..+ ...+.+++..+.+.||||||++.|..++..+++++|++|+|||++++.+|+.+. .|+..+....+
T Consensus        59 ~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  137 (214)
T 2j1l_A           59 FPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK  137 (214)
T ss_dssp             -----CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCS
T ss_pred             CCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC
Confidence            4567889998766 456778999999999999999999999999999999999999999999999986 79999988878


Q ss_pred             CCCEEEEEeCCCCCCc-------------ccCh-HHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029854           82 NIPIVLCGNKVDVKNR-------------QVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~-------------~~~~-~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                      +.|+++|+||+|+.+.             .+.. +...+++.+++ +++++||++|.||+++|.++++.+.+..
T Consensus       138 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~~  211 (214)
T 2j1l_A          138 KVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSSR  211 (214)
T ss_dssp             SCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC-
T ss_pred             CCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence            8999999999999753             2332 34577888887 8999999999999999999999987553

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.92  E-value=6.7e-24  Score=152.55  Aligned_cols=134  Identities=29%  Similarity=0.445  Sum_probs=116.2

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      +...|.||++..+. ..+.+++..+.+.+|||||++.+..++..++++++++++|||++++.+|+.+..|+..+....  
T Consensus        28 ~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~  106 (167)
T 1c1y_A           28 FVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT  106 (167)
T ss_dssp             CCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC
T ss_pred             CCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCc
Confidence            45678899997775 567788899999999999999999999999999999999999999999999999999888763  


Q ss_pred             CCCCEEEEEeCCCCCC-cccCh-HHHHHHHHc-CCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854           81 ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                      .+.|+++|+||+|+.+ +.+.. +...++..+ +.+++++||++|.|++++|.++.+.+.
T Consensus       107 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  166 (167)
T 1c1y_A          107 EDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN  166 (167)
T ss_dssp             SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred             CCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHHh
Confidence            5899999999999975 33333 345777777 789999999999999999999998874

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.92  E-value=9.2e-24  Score=158.93  Aligned_cols=148  Identities=44%  Similarity=0.745  Sum_probs=123.0

Q ss_pred             CCccccccceEEEEEEEEEECC-eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~-~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~   81 (186)
                      +...+.+|+|..+....+...+ ..+.+.||||+|++.+..++..+++++|++|+|||+++..+++.+..|+..+.....
T Consensus        36 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~  115 (218)
T 4djt_A           36 FEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVG  115 (218)
T ss_dssp             TTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC
T ss_pred             CCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC
Confidence            3466789999999888876644 449999999999999999999999999999999999999999999999999988764


Q ss_pred             -CCCEEEEEeCCCCCCc-ccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCCcccccCCCC
Q 029854           82 -NIPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPAL  150 (186)
Q Consensus        82 -~~p~ilv~nK~Dl~~~-~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~~~~~~~  150 (186)
                       +.|+++|+||+|+.+. .+..+ ...++...+++++++||++|.|++++|.++.+.+.+............
T Consensus       116 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~~~~~~~~  187 (218)
T 4djt_A          116 NEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNL  187 (218)
T ss_dssp             SSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHHCCTTCCBCSCCCC
T ss_pred             CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhcccccccccccCc
Confidence             5899999999999864 44444 446777788999999999999999999999999988765544443333

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=1.1e-23  Score=157.73  Aligned_cols=136  Identities=24%  Similarity=0.372  Sum_probs=111.9

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhH-HHHHHHHHhhcC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i-~~~~~~~~~~~~   81 (186)
                      +...|.||++.++.. .+.+++..+.+.||||||++++..++..+++++|++|+|||++++.+|+.+ ..|+..+....+
T Consensus        50 ~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  128 (207)
T 2fv8_A           50 FPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP  128 (207)
T ss_dssp             CC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST
T ss_pred             CCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC
Confidence            455688999988865 467899999999999999999999999999999999999999999999998 689998888778


Q ss_pred             CCCEEEEEeCCCCCCc-------------ccCh-HHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           82 NIPIVLCGNKVDVKNR-------------QVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~-------------~~~~-~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      +.|+++|+||+|+.+.             .+.. +...++...+. +++++||++|.||+++|.++.+.+...
T Consensus       129 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~~  201 (207)
T 2fv8_A          129 NVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQK  201 (207)
T ss_dssp             TCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence            8999999999999753             2232 34567777787 899999999999999999999998754

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.92  E-value=7.6e-24  Score=155.99  Aligned_cols=130  Identities=16%  Similarity=0.301  Sum_probs=110.9

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      +...|.||.+ ++ .+.+.+++..+.++||||+|+++|.     +++++|++++|||++++.+|+.+..|+..+....  
T Consensus        45 ~~~~~~~t~~-~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~  117 (184)
T 3ihw_A           45 YVQEESPEGG-RF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNA  117 (184)
T ss_dssp             CCCCCCTTCE-EE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCG
T ss_pred             CCCCcCCCcc-eE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC
Confidence            4556888844 44 4788889999999999999998877     8899999999999999999999999999998864  


Q ss_pred             CCCCEEEEEeCCCCC---CcccChH-HHHHHHHcC-CcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           81 ENIPIVLCGNKVDVK---NRQVKAK-QVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~---~~~~~~~-~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      .+.|+++|+||+|+.   .+.+..+ ..+++..++ ++++++||++|.||+++|.++++.+.+.
T Consensus       118 ~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~  181 (184)
T 3ihw_A          118 SEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVAL  181 (184)
T ss_dssp             GGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence            579999999999994   3444443 557888886 8999999999999999999999988654

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.92  E-value=6.9e-24  Score=152.31  Aligned_cols=135  Identities=27%  Similarity=0.430  Sum_probs=114.8

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC-
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~-   81 (186)
                      +...+.||++..+. ..+.+++..+.+.+|||||++++..++..+++.++++++|||++++.++..+..|+..+..... 
T Consensus        29 ~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~  107 (168)
T 1u8z_A           29 FVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED  107 (168)
T ss_dssp             CCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC
T ss_pred             cCCCCCCCcceEEE-EEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence            45678899997775 4667899999999999999999999999999999999999999999999999999999988753 


Q ss_pred             -CCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           82 -NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        82 -~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                       +.|+++|+||+|+.+ +.... +...++..++++++++||++|.|++++|+++.+.+.+
T Consensus       108 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  167 (168)
T 1u8z_A          108 ENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA  167 (168)
T ss_dssp             TTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             CCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence             899999999999975 33333 3557888889999999999999999999999998754

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.91  E-value=4.2e-24  Score=155.66  Aligned_cols=136  Identities=28%  Similarity=0.498  Sum_probs=104.7

Q ss_pred             CCccccccceEEEEEEEEEEC-CeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-
Q 029854            3 VSVWGKATIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~-~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-   80 (186)
                      +...+.||+|.++....+.++ +..+.+.+|||||++.+..++..+++++|++|+|||++++.+++.+..|+..+.... 
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~  112 (182)
T 1ky3_A           33 YSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHAN  112 (182)
T ss_dssp             CCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHC
T ss_pred             CCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhc
Confidence            456788999999998888887 667999999999999999999999999999999999999999999999999887764 


Q ss_pred             ----CCCCEEEEEeCCCCCC--cccChH-HHHHHH-HcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           81 ----ENIPIVLCGNKVDVKN--RQVKAK-QVTFHR-KKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        81 ----~~~p~ilv~nK~Dl~~--~~~~~~-~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                          .+.|+++|+||+|+.+  +.+..+ ...++. ..+.+++++||++|.|++++|.++.+.+.+
T Consensus       113 ~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  178 (182)
T 1ky3_A          113 VNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ  178 (182)
T ss_dssp             CSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             ccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHHH
Confidence                5789999999999963  223333 456666 456899999999999999999999998864

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.91  E-value=7.6e-25  Score=159.91  Aligned_cols=135  Identities=25%  Similarity=0.378  Sum_probs=100.5

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhcC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCE   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~~   81 (186)
                      +...|.||+|..+. ..+.+++..+.++||||||+++|..++..+++++|++++|||++++.+|+.+. .|+..+....+
T Consensus        33 ~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  111 (182)
T 3bwd_D           33 FPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP  111 (182)
T ss_dssp             CC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT
T ss_pred             CCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC
Confidence            45678899987664 34556788899999999999999999999999999999999999999999987 79999988777


Q ss_pred             CCCEEEEEeCCCCCCccc-----------C-hHHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           82 NIPIVLCGNKVDVKNRQV-----------K-AKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~~~-----------~-~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      +.|+++|+||+|+.+...           . .+..+++..++. +++++||++|.|++++|+++++.+.+
T Consensus       112 ~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  181 (182)
T 3bwd_D          112 GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQ  181 (182)
T ss_dssp             TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred             CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            899999999999864321           2 334578888886 89999999999999999999988753

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.91  E-value=1.3e-23  Score=151.10  Aligned_cols=132  Identities=19%  Similarity=0.239  Sum_probs=95.4

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCC
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENI   83 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~   83 (186)
                      .+.||.|..+ ...+.+++..+.+.+|||+|++.+..++..+++.++++++|||++++.+|+.+..|+..+....  .+.
T Consensus        29 ~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~  107 (166)
T 3q72_A           29 PEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDV  107 (166)
T ss_dssp             -------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CC
T ss_pred             CCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence            4567788777 4677889999999999999999999999999999999999999999999999999999988763  579


Q ss_pred             CEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           84 PIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        84 p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      |+++|+||+|+.+ +.+..+ ...++...+++++++||++|.|++++|.++.+.+..
T Consensus       108 p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  164 (166)
T 3q72_A          108 PIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRL  164 (166)
T ss_dssp             CEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred             CEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHh
Confidence            9999999999975 444444 457888889999999999999999999999988753

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.91  E-value=1.3e-23  Score=153.07  Aligned_cols=127  Identities=16%  Similarity=0.236  Sum_probs=106.4

Q ss_pred             ccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc----CC
Q 029854            7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC----EN   82 (186)
Q Consensus         7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~----~~   82 (186)
                      |.||+|..+ .+.+.+++..+.++||||+|+++     ..+++++|++|+|||++++.+|+.+..|++.+....    ++
T Consensus        35 ~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~  108 (178)
T 2iwr_A           35 LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGG  108 (178)
T ss_dssp             CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCC
T ss_pred             cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            789999665 57788899999999999999987     468899999999999999999999999876665542    47


Q ss_pred             CCEEEEEeCCCCC---CcccChH-HHHHHHHc-CCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           83 IPIVLCGNKVDVK---NRQVKAK-QVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        83 ~p~ilv~nK~Dl~---~~~~~~~-~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      .|+++|+||+|+.   .+.+..+ ..+++... +++++++||++|.|++++|.++++.+...
T Consensus       109 ~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  170 (178)
T 2iwr_A          109 LALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTL  170 (178)
T ss_dssp             CEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHHHH
Confidence            8999999999994   3444433 45677765 68999999999999999999999988653

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=4.4e-24  Score=161.00  Aligned_cols=131  Identities=21%  Similarity=0.271  Sum_probs=111.4

Q ss_pred             cccceEEEEEEEEEECCeEEEEEEEeCCCccc-cCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCCC
Q 029854            8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIP   84 (186)
Q Consensus         8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~-~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~p   84 (186)
                      .||+|.++..+.+.+++..+.+.+|||+|++. +..++..+++.++++|+|||++++.+|+.+..|...+.+..  .+.|
T Consensus        68 ~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~p  147 (211)
T 2g3y_A           68 CEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP  147 (211)
T ss_dssp             ---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSC
T ss_pred             CCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            46788899888999999999999999999887 56677888999999999999999999999999998887642  5799


Q ss_pred             EEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           85 IVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        85 ~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      ++||+||+|+.+ +.+..+ ...++..+++++++|||++|.||+++|.++++.+..
T Consensus       148 iilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~i~~  203 (211)
T 2g3y_A          148 IILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRL  203 (211)
T ss_dssp             EEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            999999999974 444433 456778889999999999999999999999998853

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.91  E-value=2.9e-23  Score=152.23  Aligned_cols=136  Identities=25%  Similarity=0.402  Sum_probs=116.4

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      +...+.||++. .....+.+++..+.+.||||||++.+..++..+++++|++++|||++++.+|+.+..|+..+....  
T Consensus        29 ~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  107 (189)
T 4dsu_A           29 FVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDS  107 (189)
T ss_dssp             CCCCCCTTCCE-EEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCchh-eEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence            34567888864 445677789999999999999999999999999999999999999999999999999999988864  


Q ss_pred             CCCCEEEEEeCCCCCCcccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           81 ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      .+.|+++|+||+|+.++....+ ...++..++++++++||++|.|++++|.++.+.+...
T Consensus       108 ~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~  167 (189)
T 4dsu_A          108 EDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH  167 (189)
T ss_dssp             SCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            5799999999999987665554 4578888899999999999999999999999988654

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.91  E-value=1.5e-24  Score=163.20  Aligned_cols=137  Identities=30%  Similarity=0.477  Sum_probs=119.5

Q ss_pred             CCccccccceEEEEEEEEEECCe----------EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHH
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCG----------KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTW   72 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~----------~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~   72 (186)
                      +...+.||+|.++..+.+.+++.          .+.++||||+|+++|..++..+++++|++|+|||++++.+++.+..|
T Consensus        50 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~  129 (217)
T 2f7s_A           50 FNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNW  129 (217)
T ss_dssp             CCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHH
T ss_pred             CCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHH
Confidence            45678899999999888888776          89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhc--CCCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           73 HRDLCRVC--ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        73 ~~~~~~~~--~~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      +..+....  .+.|+++|+||+|+.+ +.+.. +...++..++++++++||++|.||+++|.+|.+.+.+.
T Consensus       130 l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~  200 (217)
T 2f7s_A          130 MSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKR  200 (217)
T ss_dssp             HHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            98887654  5799999999999975 33433 35578888899999999999999999999999988653

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.91  E-value=1.3e-23  Score=152.34  Aligned_cols=132  Identities=20%  Similarity=0.269  Sum_probs=108.8

Q ss_pred             ccccceEEEEEEEEEECCeEEEEEEEeCCCccc--cCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CC
Q 029854            7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--EN   82 (186)
Q Consensus         7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~--~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~   82 (186)
                      ..+|+|.++....+.+++..+.+.+|||+|++.  +..++..+++.++++++|||++++.+|+.+..|+..+....  .+
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~  111 (175)
T 2nzj_A           32 LHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADH  111 (175)
T ss_dssp             -CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----
T ss_pred             ccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCC
Confidence            346788888888889999999999999999988  56677888999999999999999999999999999887753  47


Q ss_pred             CCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           83 IPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        83 ~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      .|+++|+||+|+.+ +.+..+ ...++..++++++++||++|.|++++|.+|++.+..
T Consensus       112 ~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  169 (175)
T 2nzj_A          112 VPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRL  169 (175)
T ss_dssp             CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            99999999999975 444433 457788889999999999999999999999998854

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.91  E-value=4.1e-23  Score=147.84  Aligned_cols=135  Identities=25%  Similarity=0.419  Sum_probs=117.6

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC-
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~-   81 (186)
                      +...+.||++..+ ...+.+++..+.+.+|||||++++..++..+++.+|++++|||+++..++..+..|+..+..... 
T Consensus        28 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~  106 (166)
T 2ce2_X           28 FVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS  106 (166)
T ss_dssp             CCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             CccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence            3456788888665 45677889999999999999999999999999999999999999999999999999999887753 


Q ss_pred             -CCCEEEEEeCCCCCCcccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           82 -NIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        82 -~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                       +.|+++|+||+|+.++....+ ..+++..++++++++||++|.|++++|.++.+.+.+
T Consensus       107 ~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  165 (166)
T 2ce2_X          107 DDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             SCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHHHHT
T ss_pred             CCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHh
Confidence             799999999999987544443 557888889999999999999999999999998754

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.91  E-value=1.8e-23  Score=155.50  Aligned_cols=136  Identities=27%  Similarity=0.428  Sum_probs=119.2

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC-
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~-   81 (186)
                      +...|.||++..+. ..+.+++..+.+.||||||++.+..++..++++++++++|||+++..+|..+..|+..+..... 
T Consensus        39 ~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~  117 (206)
T 2bov_A           39 FVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED  117 (206)
T ss_dssp             CCTTCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCccceEEE-EEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence            45678899997764 5677899999999999999999999999999999999999999999999999999999988753 


Q ss_pred             -CCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           82 -NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        82 -~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                       +.|+++|+||+|+.+ +.+.. +...++..++++++++||++|.|++++|.++++.+...
T Consensus       118 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~  178 (206)
T 2bov_A          118 ENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR  178 (206)
T ss_dssp             SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence             899999999999975 33433 35578888899999999999999999999999998753

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.91  E-value=5e-25  Score=163.92  Aligned_cols=137  Identities=29%  Similarity=0.500  Sum_probs=112.7

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...+.||++.++....+.+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+|+.+..|+..+.... .
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~  137 (199)
T 3l0i_B           58 YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE  137 (199)
T ss_dssp             CCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-C
T ss_pred             CCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccC
Confidence            355678999999999999999999999999999999999999999999999999999999999999999999997765 4


Q ss_pred             CCCEEEEEeCCCCCCc-ccC-hHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           82 NIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      +.|+++|+||+|+.+. .+. .....++..++++++++||++|.||+++|.+|++.+.+.
T Consensus       138 ~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~~~  197 (199)
T 3l0i_B          138 NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR  197 (199)
T ss_dssp             CSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHTTTTTTT
T ss_pred             CCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            7999999999999753 333 335578888899999999999999999999998877543

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.91  E-value=1.5e-23  Score=153.41  Aligned_cols=135  Identities=27%  Similarity=0.432  Sum_probs=118.0

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcC-
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~-   81 (186)
                      +...|.||++..+. ..+.+++..+.+.||||||++.+..++..+++.+|++|+|||++++.++..+..|+..+..... 
T Consensus        43 ~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~  121 (187)
T 2a9k_A           43 FVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED  121 (187)
T ss_dssp             CCCSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC
T ss_pred             CCCcCCCccceEEE-EEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC
Confidence            45678899997774 4667889999999999999999999999999999999999999999999999999999988764 


Q ss_pred             -CCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           82 -NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        82 -~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                       +.|+++|+||+|+.+ +.+.. +...++..++++++++||++|.|++++|.+|.+.+..
T Consensus       122 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  181 (187)
T 2a9k_A          122 ENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA  181 (187)
T ss_dssp             TTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence             899999999999975 33333 3557888889999999999999999999999998864

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.91  E-value=1.4e-23  Score=150.53  Aligned_cols=134  Identities=25%  Similarity=0.380  Sum_probs=116.6

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      +...+.||++..+ ...+.+++..+.+.+|||||++.+..++..++++++++++|||++++.+++.+..|+..+....  
T Consensus        28 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~  106 (167)
T 1kao_A           28 FIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY  106 (167)
T ss_dssp             CCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT
T ss_pred             CcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC
Confidence            3456889998655 6778889999999999999999999999999999999999999999999999999999888764  


Q ss_pred             CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854           81 ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                      .+.|+++|+||+|+.+ +.+... ...++..++++++++||++|.|++++|+++.+.+.
T Consensus       107 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  165 (167)
T 1kao_A          107 EKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN  165 (167)
T ss_dssp             SCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHHHh
Confidence            4799999999999864 334333 45788888999999999999999999999998874

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=3e-23  Score=153.81  Aligned_cols=135  Identities=24%  Similarity=0.301  Sum_probs=117.0

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      +...|.||++.++ ...+.+++..+.+.||||||++. ..++..+++.++++|+|||++++.+|+.+..|+..+....  
T Consensus        53 ~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~  130 (196)
T 2atv_A           53 FIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKP  130 (196)
T ss_dssp             CCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT
T ss_pred             CCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCC
Confidence            4567899999777 45677899999999999999988 7788899999999999999999999999999999988764  


Q ss_pred             CCCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCC-CchHHHHHHHHHHhCC
Q 029854           81 ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNY-NFEKPFLYLARKLAGD  139 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~~~  139 (186)
                      .+.|+++|+||+|+.+ +.+.. +...++..++++++++||++|. |++++|.++++.+.+.
T Consensus       131 ~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~  192 (196)
T 2atv_A          131 KNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR  192 (196)
T ss_dssp             SCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHHhh
Confidence            5899999999999975 34443 3557888889999999999999 9999999999988653

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.91  E-value=1.8e-23  Score=156.32  Aligned_cols=133  Identities=22%  Similarity=0.383  Sum_probs=112.8

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhcC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCE   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~~   81 (186)
                      +...+.||++.. ....+.+++..+.+.||||||+++|..++..+++++|++|+|||++++.+|+.+. .|+..+....+
T Consensus        55 ~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  133 (204)
T 4gzl_A           55 FPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP  133 (204)
T ss_dssp             CCC-CCCCSEEE-EEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS
T ss_pred             CCCCcCCeecce-eEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC
Confidence            456788999754 4567788999999999999999999999999999999999999999999999986 89999988878


Q ss_pred             CCCEEEEEeCCCCCCcc-------------cCh-HHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHH
Q 029854           82 NIPIVLCGNKVDVKNRQ-------------VKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~~-------------~~~-~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      +.|+++|+||+|+.+..             +.. +...+++..+. +++++||++|.||+++|+++.+.+
T Consensus       134 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          134 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             SCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred             CCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            89999999999997532             222 34577788876 599999999999999999998764

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.91  E-value=1e-22  Score=149.87  Aligned_cols=136  Identities=24%  Similarity=0.390  Sum_probs=108.0

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      +...+.+|++..+. ..+.+++..+.+.||||+|++.+..++..+++.++++++|||+++..+++.+..|+..+....  
T Consensus        46 ~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~  124 (190)
T 3con_A           46 FVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDS  124 (190)
T ss_dssp             CCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             CccccCCccceEEE-EEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC
Confidence            34567888886664 577789999999999999999999999999999999999999999999999999999988765  


Q ss_pred             CCCCEEEEEeCCCCCCcccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           81 ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      .+.|+++|+||+|+.++....+ ..+++..++++++++||++|.|++++|.+|.+.+.+.
T Consensus       125 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  184 (190)
T 3con_A          125 DDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQY  184 (190)
T ss_dssp             SCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            3799999999999987554443 5578888899999999999999999999999988653

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.90  E-value=1.3e-23  Score=155.58  Aligned_cols=131  Identities=21%  Similarity=0.348  Sum_probs=107.5

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-----
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----   80 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-----   80 (186)
                      .|.||+|..+...    ++..+.++||||+|+++|..++..+++++|++|+|||++++.+|..+..|+..+.+..     
T Consensus        46 ~~~~t~~~~~~~~----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~  121 (199)
T 4bas_A           46 HITATVGYNVETF----EKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRE  121 (199)
T ss_dssp             CCCCCSSEEEEEE----EETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSB
T ss_pred             ccccccceeEEEE----EeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhc
Confidence            6899999666543    3467899999999999999999999999999999999999999999999988886642     


Q ss_pred             ----CCCCEEEEEeCCCCCCcccChHHH------HHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029854           81 ----ENIPIVLCGNKVDVKNRQVKAKQV------TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus        81 ----~~~p~ilv~nK~Dl~~~~~~~~~~------~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                          .+.|++||+||+|+.+.....+..      .+++..++++++|||++|.||+++|++|++.+....
T Consensus       122 ~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~  191 (199)
T 4bas_A          122 LPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQS  191 (199)
T ss_dssp             CTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred             ccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence                279999999999998653222211      111345678999999999999999999999987553

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.90  E-value=4.3e-23  Score=152.72  Aligned_cols=136  Identities=22%  Similarity=0.271  Sum_probs=117.3

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      +...|.||++..+. ..+.+++..+.+.||||||++.|..++..+++++|++|+|||++++.+++.+..|+..+.+..  
T Consensus        33 ~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~  111 (199)
T 2gf0_A           33 FRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGS  111 (199)
T ss_dssp             CCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSC
T ss_pred             CCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcC
Confidence            34568899997765 456778899999999999999999999999999999999999999999999988888776653  


Q ss_pred             -CCCCEEEEEeCCCCCCcccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           81 -ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        81 -~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                       .+.|+++|+||+|+.++.+..+ ...++..++++++++||++|.|++++|.++++.+...
T Consensus       112 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  172 (199)
T 2gf0_A          112 VEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRR  172 (199)
T ss_dssp             GGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHCSSS
T ss_pred             CCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHhhh
Confidence             4789999999999987655444 4577888899999999999999999999999987654

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.90  E-value=8.2e-23  Score=151.48  Aligned_cols=131  Identities=21%  Similarity=0.281  Sum_probs=110.1

Q ss_pred             cccceEEEEEEEEEECCeEEEEEEEeCCCccc-cCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCCC
Q 029854            8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIP   84 (186)
Q Consensus         8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~-~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~p   84 (186)
                      .+|+|.++..+.+.+++..+.+.+|||+|+.. +..++..+++.++++++|||++++.||+.+..|...+....  .+.|
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~p  116 (192)
T 2cjw_A           37 XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP  116 (192)
T ss_dssp             -GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCC
T ss_pred             ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCe
Confidence            35688898888899999999999999999877 56678889999999999999999999999999988887653  4799


Q ss_pred             EEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           85 IVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        85 ~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      +++|+||+|+.. +.+..+ ...++..+++++++|||++|.||+++|.++++.+..
T Consensus       117 iilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~~~~  172 (192)
T 2cjw_A          117 IILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRL  172 (192)
T ss_dssp             EEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHHHHHh
Confidence            999999999974 344333 446777888999999999999999999999998853

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.90  E-value=1.9e-23  Score=155.54  Aligned_cols=127  Identities=14%  Similarity=0.190  Sum_probs=97.8

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCCC
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENI   83 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~~   83 (186)
                      .|.||+|...  ..+.+++  +.+++|||||++.+..++..+++++|++|+|||++++.+|..+..|+..+.+.  ..+.
T Consensus        52 ~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~  127 (198)
T 1f6b_A           52 QHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANV  127 (198)
T ss_dssp             ---CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTS
T ss_pred             ccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCC
Confidence            5778998864  3555565  78999999999999999999999999999999999999999999999988764  2689


Q ss_pred             CEEEEEeCCCCCCcccChHHHHHHHH-----------------cCCcEEEeccCCCCCchHHHHHHHHHH
Q 029854           84 PIVLCGNKVDVKNRQVKAKQVTFHRK-----------------KNLQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        84 p~ilv~nK~Dl~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      |+++|+||+|+.+.....+..+++..                 .++++++|||++|.||+++|.++.+.+
T Consensus       128 piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l  197 (198)
T 1f6b_A          128 PILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI  197 (198)
T ss_dssp             CEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             cEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence            99999999999763222333344432                 235799999999999999999998643

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.90  E-value=5.9e-23  Score=151.88  Aligned_cols=126  Identities=16%  Similarity=0.245  Sum_probs=102.8

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCCC
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENI   83 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~~   83 (186)
                      .|.||+|....  .+.+++  +.+++|||||++.+..++..+++++|++|+|||++++.+|+.+..|+..+.+.  ..+.
T Consensus        50 ~~~~t~~~~~~--~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~  125 (190)
T 1m2o_B           50 TLQPTWHPTSE--ELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDV  125 (190)
T ss_dssp             CCCCCCSCEEE--EEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTC
T ss_pred             ccccCCCCCeE--EEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCC
Confidence            57899998643  555565  88999999999999999999999999999999999999999999999888764  2689


Q ss_pred             CEEEEEeCCCCCCcccChHHHHHHHH------------cCCcEEEeccCCCCCchHHHHHHHHH
Q 029854           84 PIVLCGNKVDVKNRQVKAKQVTFHRK------------KNLQYYEISAKSNYNFEKPFLYLARK  135 (186)
Q Consensus        84 p~ilv~nK~Dl~~~~~~~~~~~~~~~------------~~~~~~~~Sa~~~~gi~~l~~~l~~~  135 (186)
                      |+++|+||+|+.+.....+..+++..            .++++++|||++|.|++++|.++++.
T Consensus       126 piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          126 PFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             CEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             CEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence            99999999999763222223333221            34579999999999999999999754

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.90  E-value=6.4e-23  Score=147.93  Aligned_cols=135  Identities=22%  Similarity=0.284  Sum_probs=114.6

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      +...+.||++..+. ..+.+++..+.+.+|||||++.+..++..+++.+|++|+|||++++.+++.+..|+..+.+..  
T Consensus        28 ~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~  106 (172)
T 2erx_A           28 FRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGD  106 (172)
T ss_dssp             CCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC-
T ss_pred             CCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC
Confidence            34578899997765 456678889999999999999999999999999999999999999999999999988887754  


Q ss_pred             -CCCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           81 -ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        81 -~~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                       ++.|+++|+||+|+.+ +.+.. +...++..++++++++||++|.|++++|+++.+.+..
T Consensus       107 ~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  167 (172)
T 2erx_A          107 VESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKR  167 (172)
T ss_dssp             --CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTCCS
T ss_pred             CCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHHhh
Confidence             5799999999999975 33333 3457778888999999999999999999999986643

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.90  E-value=6.4e-23  Score=150.52  Aligned_cols=132  Identities=14%  Similarity=0.167  Sum_probs=106.7

Q ss_pred             CccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cC
Q 029854            4 SVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CE   81 (186)
Q Consensus         4 ~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~   81 (186)
                      ...+.||+|.....  +.++  .+.+++|||||++++..++..+++++|++|+|||++++.+|+.+..|+..+.+.  ..
T Consensus        43 ~~~~~~t~~~~~~~--~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~  118 (186)
T 1ksh_A           43 VDTISPTLGFNIKT--LEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLA  118 (186)
T ss_dssp             CSSCCCCSSEEEEE--EEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGT
T ss_pred             CCcccccCccceEE--EEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcC
Confidence            45688999966543  4343  578999999999999999999999999999999999999999999998888765  36


Q ss_pred             CCCEEEEEeCCCCCCcccChHHHHHH-----HHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           82 NIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      +.|+++|+||+|+.+.....+..+..     ...+++++++||++|.|++++|+++.+.+.+.
T Consensus       119 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          119 GATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR  181 (186)
T ss_dssp             TCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             CCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence            89999999999997643222222211     12356899999999999999999999998765

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.89  E-value=7.1e-24  Score=155.92  Aligned_cols=137  Identities=15%  Similarity=0.270  Sum_probs=104.5

Q ss_pred             CccccccceEEEEEEEEEE---CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCCh-hhHHhHHHHHHHHHhh
Q 029854            4 SVWGKATIGVEVHPLDFFT---NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR-LTYKNVPTWHRDLCRV   79 (186)
Q Consensus         4 ~~~~~~Tig~~~~~~~~~~---~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~-~s~~~i~~~~~~~~~~   79 (186)
                      ...|.||+|.++....+.+   ++..+.+++|||+|+++|..++..++++++++++|||++++ .+|+.+..|+..+...
T Consensus        30 ~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~  109 (184)
T 2zej_A           30 LGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKAR  109 (184)
T ss_dssp             -------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHH
T ss_pred             CCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhh
Confidence            3568999999998877665   34678999999999999999999999999999999999997 5899999999998877


Q ss_pred             cCCCCEEEEEeCCCCCCcccC-----hHHHHHHHHcCCc----EEEeccCCCC-CchHHHHHHHHHHhCCC
Q 029854           80 CENIPIVLCGNKVDVKNRQVK-----AKQVTFHRKKNLQ----YYEISAKSNY-NFEKPFLYLARKLAGDP  140 (186)
Q Consensus        80 ~~~~p~ilv~nK~Dl~~~~~~-----~~~~~~~~~~~~~----~~~~Sa~~~~-gi~~l~~~l~~~i~~~~  140 (186)
                      .++.|+++|+||+|+.+....     .....++..++++    ++++||++|. |+++++..+.+.+.+..
T Consensus       110 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~  180 (184)
T 2zej_A          110 ASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNFK  180 (184)
T ss_dssp             CTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHCC-
T ss_pred             CCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhccc
Confidence            678999999999999753221     1123455556676    9999999997 99999999999887643

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.89  E-value=1.3e-22  Score=149.61  Aligned_cols=131  Identities=22%  Similarity=0.315  Sum_probs=105.3

Q ss_pred             CccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc---
Q 029854            4 SVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---   80 (186)
Q Consensus         4 ~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~---   80 (186)
                      ...+.||+|...  ..+.+++  +.+.||||+|++.+..++..+++++|++|+|||++++.+|..+..|+..+....   
T Consensus        48 ~~~~~~t~~~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~  123 (190)
T 2h57_A           48 SQNILPTIGFSI--EKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIK  123 (190)
T ss_dssp             CSSCCCCSSEEE--EEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTT
T ss_pred             CCCcCCccceeE--EEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhc
Confidence            456889999554  4444454  789999999999999999999999999999999999999999999998887653   


Q ss_pred             -CCCCEEEEEeCCCCCCcccChHHHHHHH-----HcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           81 -ENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        81 -~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                       .+.|+++|+||+|+.+.....+..+++.     ..+++++++||++|.||+++|++|.+.+.+
T Consensus       124 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          124 HRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             TSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred             cCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence             4799999999999975433233333332     235689999999999999999999987743

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.89  E-value=1.9e-22  Score=145.62  Aligned_cols=130  Identities=17%  Similarity=0.246  Sum_probs=105.0

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCC
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENI   83 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~   83 (186)
                      .+.||+|..+..  +.++  .+.+.+|||||++.+..++..+++++|++|+|||++++.+|..+..|+..+....  .+.
T Consensus        34 ~~~~t~~~~~~~--~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~  109 (171)
T 1upt_A           34 TTIPTIGFNVET--VTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKA  109 (171)
T ss_dssp             CCCCCSSEEEEE--EEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTC
T ss_pred             CcCCcCccceEE--EEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCC
Confidence            578999976654  3334  6789999999999999999999999999999999999999999988888876643  689


Q ss_pred             CEEEEEeCCCCCCcccChHHHH-----HHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           84 PIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        84 p~ilv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      |+++|+||+|+.+.....+...     ++...+++++++||++|.|++++|+++++.+.+.
T Consensus       110 piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  170 (171)
T 1upt_A          110 ILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR  170 (171)
T ss_dssp             EEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             EEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHhhc
Confidence            9999999999976432222211     1223356899999999999999999999988654

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.89  E-value=2.8e-22  Score=159.45  Aligned_cols=136  Identities=21%  Similarity=0.355  Sum_probs=117.4

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhcC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCE   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~~   81 (186)
                      +...+.||++..+ ...+.+++..+.+.||||||++.|..++..+++++|++|+|||++++.+|+.+. .|+..+.....
T Consensus       180 ~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  258 (332)
T 2wkq_A          180 FPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP  258 (332)
T ss_dssp             CCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT
T ss_pred             CCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC
Confidence            4567889998666 457788999999999999999999999999999999999999999999999986 79999888777


Q ss_pred             CCCEEEEEeCCCCCCc-------------ccCh-HHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           82 NIPIVLCGNKVDVKNR-------------QVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~-------------~~~~-~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      +.|+++|+||+|+.+.             .+.. +...++...++ ++++|||++|.||+++|..+++.+...
T Consensus       259 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  331 (332)
T 2wkq_A          259 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP  331 (332)
T ss_dssp             TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred             CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhcC
Confidence            8999999999999642             2333 34578888887 899999999999999999999988653

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.89  E-value=3.7e-23  Score=152.15  Aligned_cols=131  Identities=21%  Similarity=0.286  Sum_probs=101.7

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCCC
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENI   83 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~~   83 (186)
                      .+.||+|....  .+.++  .+.+++|||||++++..++..+++++|++|+|||++++.+|+.+..|+..+.+.  ..+.
T Consensus        43 ~~~~t~~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~  118 (187)
T 1zj6_A           43 HTSPTIGSNVE--EIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKA  118 (187)
T ss_dssp             EEECCSCSSCE--EEEET--TEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTC
T ss_pred             cCcCCCccceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCC
Confidence            67899986554  44444  388999999999999999999999999999999999999999999999988775  3689


Q ss_pred             CEEEEEeCCCCCCcccChHHHHHHH-----HcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029854           84 PIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus        84 p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                      |+++|+||+|+.+.....+..+...     ..+++++++||++|.|++++|+++++.+...+
T Consensus       119 piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~  180 (187)
T 1zj6_A          119 GLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRL  180 (187)
T ss_dssp             EEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC--
T ss_pred             eEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHHHh
Confidence            9999999999975432222222221     23568999999999999999999999886654

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.89  E-value=6.2e-23  Score=151.26  Aligned_cols=132  Identities=18%  Similarity=0.310  Sum_probs=105.5

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--c
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--C   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~   80 (186)
                      +...+.||+|.++...    +...+.+.||||||++++..++..+++++|++|+|||++++.+|+.+..|+..+...  .
T Consensus        47 ~~~~~~~t~~~~~~~~----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~  122 (188)
T 1zd9_A           47 FNEDMIPTVGFNMRKI----TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQL  122 (188)
T ss_dssp             CCCSCCCCCSEEEEEE----EETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGG
T ss_pred             CCCccCCCCceeEEEE----EeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCccc
Confidence            4457899999988643    235688999999999999999999999999999999999999999999998888764  2


Q ss_pred             CCCCEEEEEeCCCCCCcccChHHHHHH-----HHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           81 ENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      .+.|+++|+||+|+.+.....+.....     ...+++++++||++|.|++++|++|++.+..
T Consensus       123 ~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~  185 (188)
T 1zd9_A          123 QGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS  185 (188)
T ss_dssp             TTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred             CCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            689999999999997542212211111     1224579999999999999999999987754

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.89  E-value=5.7e-23  Score=147.51  Aligned_cols=129  Identities=22%  Similarity=0.249  Sum_probs=101.0

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCCC
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENI   83 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~~   83 (186)
                      .+.||+|....  .+.  ...+.+++|||||++++..++..+++++|++++|||++++.+|..+..|+..+...  ..+.
T Consensus        27 ~~~~t~~~~~~--~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~  102 (164)
T 1r8s_A           27 TTIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDA  102 (164)
T ss_dssp             CCCCCSSCCEE--EEE--CSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTC
T ss_pred             cccCcCceeEE--EEE--ECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCC
Confidence            46899995443  333  35588999999999999999999999999999999999999999999999888764  2589


Q ss_pred             CEEEEEeCCCCCCcccChHHHHH-----HHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           84 PIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        84 p~ilv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      |+++|+||+|+.+.....+....     +...+++++++||++|.|++++|+++.+.+.+
T Consensus       103 piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  162 (164)
T 1r8s_A          103 VLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN  162 (164)
T ss_dssp             EEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred             eEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHhh
Confidence            99999999999754221121111     11234579999999999999999999988753

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.89  E-value=5.1e-23  Score=151.04  Aligned_cols=129  Identities=16%  Similarity=0.251  Sum_probs=101.7

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCCC
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENI   83 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~~   83 (186)
                      .+.||+|..+.  .+.++  .+.+++|||||++.+..++..+++++|++++|||++++.+|+.+..|+..+...  ..+.
T Consensus        43 ~~~~t~g~~~~--~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~  118 (181)
T 1fzq_A           43 HITPTQGFNIK--SVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCV  118 (181)
T ss_dssp             EEEEETTEEEE--EEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTC
T ss_pred             cccCcCCeEEE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCC
Confidence            47899996544  44444  578999999999999999999999999999999999999999999998887654  2579


Q ss_pred             CEEEEEeCCCCCCcccChHHHHHH-----HHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           84 PIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        84 p~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      |+++|+||+|+.+.....+..+..     ...++++++|||++|.|++++|.++++.+.+
T Consensus       119 piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  178 (181)
T 1fzq_A          119 PVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNA  178 (181)
T ss_dssp             CEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC--
T ss_pred             CEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence            999999999997543222221111     1224579999999999999999999987653

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.88  E-value=6.5e-23  Score=150.16  Aligned_cols=127  Identities=21%  Similarity=0.306  Sum_probs=102.0

Q ss_pred             ccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCC
Q 029854            5 VWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CEN   82 (186)
Q Consensus         5 ~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~   82 (186)
                      ..+.||+|..+.  .+.+++  +.+.+|||+|++++..++..+++++|++|+|||++++.+|..+..|+..+.+.  ..+
T Consensus        47 ~~~~~t~~~~~~--~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~  122 (181)
T 2h17_A           47 VHTSPTIGSNVE--EIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRK  122 (181)
T ss_dssp             EEEECCSSSSCE--EEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTT
T ss_pred             CccCCcCceeeE--EEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCC
Confidence            457899997654  344444  88999999999999999999999999999999999999999999999888765  368


Q ss_pred             CCEEEEEeCCCCCCcccChHHHHHH-----HHcCCcEEEeccCCCCCchHHHHHHHHH
Q 029854           83 IPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYLARK  135 (186)
Q Consensus        83 ~p~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  135 (186)
                      .|+++|+||+|+.+.....+..+..     ...+++++++||++|.|++++|++|++.
T Consensus       123 ~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          123 AGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR  180 (181)
T ss_dssp             CEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred             CeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence            9999999999997532222222222     1234589999999999999999999754

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.88  E-value=2.7e-22  Score=148.57  Aligned_cols=129  Identities=19%  Similarity=0.234  Sum_probs=97.3

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCC
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENI   83 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~   83 (186)
                      .+.||+|....  .+..  ..+.+.+|||||++++..++..+++++|++|+|||++++.+|..+..|+..+....  .+.
T Consensus        56 ~~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~  131 (192)
T 2b6h_A           56 TTIPTIGFNVE--TVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDA  131 (192)
T ss_dssp             EEEEETTEEEE--EEEE--TTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTC
T ss_pred             ccCCcCceeEE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCC
Confidence            46789995543  3333  45889999999999999999999999999999999999999999999998887643  579


Q ss_pred             CEEEEEeCCCCCCcccChHHHHH-----HHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           84 PIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        84 p~ilv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      |+++|+||+|+.+.....+....     +...+++++++||++|.|++++|.+|++.+.+
T Consensus       132 piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~  191 (192)
T 2b6h_A          132 VLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSK  191 (192)
T ss_dssp             EEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTTT
T ss_pred             eEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHhc
Confidence            99999999999754221111111     11223579999999999999999999988753

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.88  E-value=4.2e-22  Score=146.58  Aligned_cols=130  Identities=18%  Similarity=0.204  Sum_probs=103.8

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCC
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENI   83 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~   83 (186)
                      .+.||+|.....  +.++  .+.+.+|||||++++..++..+++++|++|+|||++++.++..+..|+..+....  .+.
T Consensus        49 ~~~~t~~~~~~~--~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~  124 (189)
T 2x77_A           49 TTVPTVGVNLET--LQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKS  124 (189)
T ss_dssp             EECSSTTCCEEE--EEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTC
T ss_pred             CcCCCCceEEEE--EEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCC
Confidence            478999965543  3333  5789999999999999999999999999999999999999999988888876643  579


Q ss_pred             CEEEEEeCCCCCCcccChHHHH-----HHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           84 PIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        84 p~ilv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      |+++|+||+|+.+.....+...     .+...+++++++||++|.|++++|+++.+.+.+.
T Consensus       125 piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  185 (189)
T 2x77_A          125 LLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQ  185 (189)
T ss_dssp             EEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred             eEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHHhc
Confidence            9999999999975422122211     1122345799999999999999999999988654

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.87  E-value=9.6e-23  Score=151.26  Aligned_cols=128  Identities=17%  Similarity=0.194  Sum_probs=102.7

Q ss_pred             cccceEEEEEEEEE--E-CCeEEEEEEEeCCCccccCCcc---ccccccCcEEEEEEeCCCh--hhHHhHHHHHHHHHhh
Q 029854            8 KATIGVEVHPLDFF--T-NCGKIRFYCWDTAGQEKFGGLR---DGYYIHGQCAIIMFDVTAR--LTYKNVPTWHRDLCRV   79 (186)
Q Consensus         8 ~~Tig~~~~~~~~~--~-~~~~~~l~l~Dt~G~~~~~~~~---~~~~~~ad~vilv~D~~~~--~s~~~i~~~~~~~~~~   79 (186)
                      .+|+|.++....+.  + ++..+.++||||+|+++|..+.   ..++++++++|+|||++++  .++..+..|+..+...
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~  126 (196)
T 3llu_A           47 NETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV  126 (196)
T ss_dssp             GGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH
T ss_pred             cceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc
Confidence            36777666554443  3 3677999999999999998776   7999999999999999997  6777778888888766


Q ss_pred             cCCCCEEEEEeCCCCCCc--------ccChH-HHHHHH----HcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029854           80 CENIPIVLCGNKVDVKNR--------QVKAK-QVTFHR----KKNLQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        80 ~~~~p~ilv~nK~Dl~~~--------~~~~~-~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      .++.|++||+||+|+.+.        .+... ...++.    .++++|+++||++ .||+++|..+++.+
T Consensus       127 ~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          127 NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence            779999999999998652        22222 235666    5678999999999 99999999999876

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.79  E-value=5.1e-24  Score=158.93  Aligned_cols=133  Identities=23%  Similarity=0.398  Sum_probs=111.8

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhcC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCE   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~~   81 (186)
                      +...+.||++..+ ...+.+++..+.+++|||||+++|..++..+++++|++|+|||++++.+|+.+. .|+..+....+
T Consensus        55 ~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~  133 (204)
T 3th5_A           55 FPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP  133 (204)
Confidence            3456788987666 456677888899999999999999999999999999999999999999999986 89888887767


Q ss_pred             CCCEEEEEeCCCCCCc-------------ccC-hHHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHH
Q 029854           82 NIPIVLCGNKVDVKNR-------------QVK-AKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~-------------~~~-~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      +.|+++|+||+|+.+.             .+. .+...++...++ +++++||++|.|++++|+++++.+
T Consensus       134 ~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          134 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV  203 (204)
Confidence            8999999999999742             122 223466677776 899999999999999999998765

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.87  E-value=4.2e-22  Score=145.51  Aligned_cols=130  Identities=16%  Similarity=0.199  Sum_probs=100.0

Q ss_pred             ccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CC
Q 029854            5 VWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--EN   82 (186)
Q Consensus         5 ~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~   82 (186)
                      ..+.||+|....  .+.++  .+.+.+|||||++++..++..+++++|++++|||++++.+++.+..|+..+....  .+
T Consensus        44 ~~~~~t~~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  119 (183)
T 1moz_A           44 VTTKPTIGFNVE--TLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQD  119 (183)
T ss_dssp             EEECSSTTCCEE--EEEET--TEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSS
T ss_pred             CccCCcCccceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCC
Confidence            357899996554  34444  3889999999999999999999999999999999999999999999998887653  68


Q ss_pred             CCEEEEEeCCCCCCcccChHHHHHHH-----HcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           83 IPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        83 ~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      .|+++|+||+|+.+.....+......     ..+++++++||++|.|++++|+++.+.+.+
T Consensus       120 ~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  180 (183)
T 1moz_A          120 AALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE  180 (183)
T ss_dssp             CEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred             CeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHHh
Confidence            99999999999975422222222211     123479999999999999999999988754

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.86  E-value=1.1e-20  Score=140.41  Aligned_cols=137  Identities=33%  Similarity=0.542  Sum_probs=117.7

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...+.||+|.++....+.+++..+.+.+|||+|++++..++..++++++++++|||+++..+++.+..|+..+.... .
T Consensus        30 ~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  109 (199)
T 2f9l_A           30 FNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS  109 (199)
T ss_dssp             CCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT
T ss_pred             CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC
Confidence            345688999999999999999999999999999999999999999999999999999999999999989998877654 4


Q ss_pred             CCCEEEEEeCCCCCC-cccC-hHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           82 NIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      +.|+++++||+|+.+ +... .....++...++.++++||+++.|++++|+.+.+.+...
T Consensus       110 ~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~~~~  169 (199)
T 2f9l_A          110 NIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRI  169 (199)
T ss_dssp             TCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            789999999999975 3333 335678888899999999999999999999999988653

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.86  E-value=4.9e-23  Score=163.67  Aligned_cols=127  Identities=13%  Similarity=0.109  Sum_probs=97.8

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCC---ccccccccCcEEEEEEeCCCh--hhHHhHHHHHHHHHhhc
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---LRDGYYIHGQCAIIMFDVTAR--LTYKNVPTWHRDLCRVC   80 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~---~~~~~~~~ad~vilv~D~~~~--~s~~~i~~~~~~~~~~~   80 (186)
                      .+.||+|+++..    + +..+.++|||||||++|..   ++..|+++|+++|+|||++++  .++..+..|+..+.+..
T Consensus        30 ~~~~Tig~~~~~----v-~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~  104 (331)
T 3r7w_B           30 YLESTSNPSLEH----F-STLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVN  104 (331)
T ss_dssp             TCCCCCSCCCEE----E-CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHC
T ss_pred             eecCeeeeeeEE----E-ccEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcC
Confidence            378999999874    2 2458999999999999974   468999999999999999997  33334444566665556


Q ss_pred             CCCCEEEEEeCCCCCCc--------ccChH-HHHHHHH----cCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           81 ENIPIVLCGNKVDVKNR--------QVKAK-QVTFHRK----KNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~~--------~~~~~-~~~~~~~----~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      ++.|++++|||+|+...        ++..+ ..++++.    ++++|+++||++ .||.++|..+++.+..
T Consensus       105 ~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li~  174 (331)
T 3r7w_B          105 PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLIP  174 (331)
T ss_dssp             TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTSST
T ss_pred             CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHHHh
Confidence            78999999999999752        23232 2345554    568899999997 5999999999987753

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.86  E-value=5.2e-22  Score=160.09  Aligned_cols=129  Identities=14%  Similarity=0.137  Sum_probs=104.6

Q ss_pred             ccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCC----------hhhHHhHHHHHHHH
Q 029854            7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA----------RLTYKNVPTWHRDL   76 (186)
Q Consensus         7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~----------~~s~~~i~~~~~~~   76 (186)
                      +.||+|++...  +.++  .+.+++||||||+.++.+|..++++++++|||||+++          ..++.+...|+..+
T Consensus       177 ~~~T~Gi~~~~--~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i  252 (353)
T 1cip_A          177 RVKTTGIVETH--FTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSI  252 (353)
T ss_dssp             CCCCCSEEEEE--EEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHH
T ss_pred             cCceeceEEEE--EeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHH
Confidence            56788987644  3333  6899999999999999999999999999999999999          45788888899888


Q ss_pred             Hhh--cCCCCEEEEEeCCCCCCcc----------------cC-hHHHHHHH-----------HcCCcEEEeccCCCCCch
Q 029854           77 CRV--CENIPIVLCGNKVDVKNRQ----------------VK-AKQVTFHR-----------KKNLQYYEISAKSNYNFE  126 (186)
Q Consensus        77 ~~~--~~~~p~ilv~nK~Dl~~~~----------------~~-~~~~~~~~-----------~~~~~~~~~Sa~~~~gi~  126 (186)
                      ...  ..+.|++|++||+|+.+..                +. .+...++.           ..++.+++|||++|.||.
T Consensus       253 ~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~  332 (353)
T 1cip_A          253 CNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQ  332 (353)
T ss_dssp             HTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHH
T ss_pred             HcCccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHH
Confidence            764  3689999999999985321                22 23445554           245679999999999999


Q ss_pred             HHHHHHHHHHhCC
Q 029854          127 KPFLYLARKLAGD  139 (186)
Q Consensus       127 ~l~~~l~~~i~~~  139 (186)
                      ++|.++.+.+...
T Consensus       333 ~vF~~v~~~i~~~  345 (353)
T 1cip_A          333 FVFDAVTDVIIKN  345 (353)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988653

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.85  E-value=3.9e-22  Score=160.81  Aligned_cols=120  Identities=15%  Similarity=0.155  Sum_probs=94.1

Q ss_pred             EEEECC----eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCC----------ChhhHHhHHHHHHHHHhh--cCC
Q 029854           19 DFFTNC----GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT----------ARLTYKNVPTWHRDLCRV--CEN   82 (186)
Q Consensus        19 ~~~~~~----~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~----------~~~s~~~i~~~~~~~~~~--~~~   82 (186)
                      .+.+++    ..+.++||||+||++|+.+|..++++++++|+|||++          +..+|++...|++.+.+.  ..+
T Consensus       171 ~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~  250 (354)
T 2xtz_A          171 QFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK  250 (354)
T ss_dssp             EECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSS
T ss_pred             EEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCC
Confidence            344555    6799999999999999999999999999999999998          778999999999988764  368


Q ss_pred             CCEEEEEeCCCCCCccc-----------------------ChHHHHHHHH----------------cCCcEEEeccCCCC
Q 029854           83 IPIVLCGNKVDVKNRQV-----------------------KAKQVTFHRK----------------KNLQYYEISAKSNY  123 (186)
Q Consensus        83 ~p~ilv~nK~Dl~~~~~-----------------------~~~~~~~~~~----------------~~~~~~~~Sa~~~~  123 (186)
                      .|++||+||+|+.+..+                       ..+...++..                ..+.+++|||++|.
T Consensus       251 ~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~  330 (354)
T 2xtz_A          251 TSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQK  330 (354)
T ss_dssp             CEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHH
T ss_pred             CeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecch
Confidence            99999999999853211                       1223344322                12346899999999


Q ss_pred             CchHHHHHHHHHHhC
Q 029854          124 NFEKPFLYLARKLAG  138 (186)
Q Consensus       124 gi~~l~~~l~~~i~~  138 (186)
                      ||+++|.++.+.+..
T Consensus       331 nV~~vF~~v~~~I~~  345 (354)
T 2xtz_A          331 LVKKTFKLVDETLRR  345 (354)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHH
Confidence            999999999988864

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.85  E-value=2e-22  Score=155.96  Aligned_cols=134  Identities=19%  Similarity=0.196  Sum_probs=102.8

Q ss_pred             Cccccccc-eEEEEEEEEE--------------ECCeEEEEEEEe-----------------------CCCccccCCccc
Q 029854            4 SVWGKATI-GVEVHPLDFF--------------TNCGKIRFYCWD-----------------------TAGQEKFGGLRD   45 (186)
Q Consensus         4 ~~~~~~Ti-g~~~~~~~~~--------------~~~~~~~l~l~D-----------------------t~G~~~~~~~~~   45 (186)
                      ...|.||+ |.++..+.+.              +++..+.++|||                       ++|+++|..++.
T Consensus        57 ~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~  136 (255)
T 3c5h_A           57 HLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEK  136 (255)
T ss_dssp             CSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTC
T ss_pred             ccccCCcccccccceeEeecccccccccccccccCCcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhh
Confidence            34566776 6665543332              467889999999                       889999999999


Q ss_pred             cccc---------------------cCcEEEEEEeCCCh--hhHHhHHHHHHHHHhh--cCCCCEEEEEeCCCCCCcccC
Q 029854           46 GYYI---------------------HGQCAIIMFDVTAR--LTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVK  100 (186)
Q Consensus        46 ~~~~---------------------~ad~vilv~D~~~~--~s~~~i~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~  100 (186)
                      .+++                     +||++|+|||++++  .+|+.+..|+..+.+.  ..+.|++||+||+|+.+....
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v  216 (255)
T 3c5h_A          137 LMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI  216 (255)
T ss_dssp             BCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH
T ss_pred             hhhhccccccccccccccccccccccCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH
Confidence            9998                     89999999999998  8999999999998775  268999999999999753222


Q ss_pred             hHHHHHHHH-cCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854          101 AKQVTFHRK-KNLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus       101 ~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                      .+...++.. .+++++++||++|.||+++|.+|++.+.
T Consensus       217 ~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l~  254 (255)
T 3c5h_A          217 RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLID  254 (255)
T ss_dssp             HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            445567765 4789999999999999999999998764

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.85  E-value=4.1e-20  Score=136.72  Aligned_cols=134  Identities=32%  Similarity=0.552  Sum_probs=117.9

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...+.||+|.++....+.+++..+.+++|||+|++++..++..+++.++++++|||.++..+|+.+..|+..+.... .
T Consensus        54 ~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  133 (191)
T 1oix_A           54 FNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS  133 (191)
T ss_dssp             CCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCT
T ss_pred             CCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC
Confidence            356788999999999999999999999999999999999999999999999999999999999999989998876654 4


Q ss_pred             CCCEEEEEeCCCCCC-cccC-hHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029854           82 NIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      +.|+++++||+|+.+ +... .....++...++.++++||+++.|++++|+.+.+.+
T Consensus       134 ~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~~~i  190 (191)
T 1oix_A          134 NIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI  190 (191)
T ss_dssp             TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            789999999999975 2333 335678888899999999999999999999998875

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.85  E-value=3e-21  Score=152.72  Aligned_cols=123  Identities=15%  Similarity=0.017  Sum_probs=100.7

Q ss_pred             ccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCC
Q 029854            5 VWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENI   83 (186)
Q Consensus         5 ~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~-s~~~i~~~~~~~~~~~~~~   83 (186)
                      ..|.||||..+. ..+..++   .+++|||  +++|+.+++.+++++|++|+|||++++. ++..+..|+..+..  .+.
T Consensus        45 ~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~--~~~  116 (301)
T 1u0l_A           45 QNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK--NEL  116 (301)
T ss_dssp             TTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH--TTC
T ss_pred             cCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--CCC
Confidence            678999995554 3332232   7899999  9999999999999999999999999987 78888999988765  479


Q ss_pred             CEEEEEeCCCCCCcccChHHHHHHHHcC--CcEEEeccCCCCCchHHHHHHHHH
Q 029854           84 PIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARK  135 (186)
Q Consensus        84 p~ilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~  135 (186)
                      |++||+||+|+.+.....+..+++..++  ++++++||++|.||+++|..+...
T Consensus       117 piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ge  170 (301)
T 1u0l_A          117 ETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGK  170 (301)
T ss_dssp             EEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSSS
T ss_pred             CEEEEEeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcCC
Confidence            9999999999975322233456777777  899999999999999999887643

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.85  E-value=2.1e-21  Score=158.49  Aligned_cols=127  Identities=17%  Similarity=0.143  Sum_probs=101.0

Q ss_pred             cccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCC----------hhhHHhHHHHHHHHH
Q 029854            8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA----------RLTYKNVPTWHRDLC   77 (186)
Q Consensus         8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~----------~~s~~~i~~~~~~~~   77 (186)
                      .||+|+++.  .+.++  .+.++||||+||++|+.+|..++++|+++|||||+++          ..+|+++..|+..+.
T Consensus       202 ~~TiGi~~~--~~~~~--~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~  277 (402)
T 1azs_C          202 VLTSGIFET--KFQVD--KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIW  277 (402)
T ss_dssp             CCCCSEEEE--EEEET--TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHH
T ss_pred             cceeeeEEE--EeecC--CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHH
Confidence            357787764  44444  4899999999999999999999999999999999999          889999999999987


Q ss_pred             hh--cCCCCEEEEEeCCCCCCccc---C-----------------------------hHHHHH-----HHH--------c
Q 029854           78 RV--CENIPIVLCGNKVDVKNRQV---K-----------------------------AKQVTF-----HRK--------K  110 (186)
Q Consensus        78 ~~--~~~~p~ilv~nK~Dl~~~~~---~-----------------------------~~~~~~-----~~~--------~  110 (186)
                      ..  ..+.|++||+||+|+....+   .                             .++..+     +..        .
T Consensus       278 ~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~  357 (402)
T 1azs_C          278 NNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRH  357 (402)
T ss_dssp             TCTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSS
T ss_pred             hcccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCc
Confidence            75  36899999999999853211   0                             122233     222        2


Q ss_pred             CCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854          111 NLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus       111 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      ++.++++||+++.||+++|.++.+.+..
T Consensus       358 ~~~~~~TSA~d~~nV~~vF~~v~~~I~~  385 (402)
T 1azs_C          358 YCYPHFTCAVDTENIRRVFNDCRDIIQR  385 (402)
T ss_dssp             CEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccEEEEEEeecCcCHHHHHHHHHHHHHH
Confidence            3567899999999999999999887764

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.84  E-value=1.5e-20  Score=150.52  Aligned_cols=129  Identities=22%  Similarity=0.292  Sum_probs=97.9

Q ss_pred             ccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCCC
Q 029854            7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIP   84 (186)
Q Consensus         7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~p   84 (186)
                      ..||++..+.....    ..+.++||||||++.|..++..+++++|++|+|||++++.+|..+..|+..+....  .+.|
T Consensus       193 ~~pT~~~~~~~~~~----~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~p  268 (329)
T 3o47_A          193 TIPTIGFNVETVEY----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV  268 (329)
T ss_dssp             EEEETTEEEEEEEE----TTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCE
T ss_pred             cccccceEEEEEec----CcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCe
Confidence            45899988765433    56889999999999999999999999999999999999999999988877776543  5899


Q ss_pred             EEEEEeCCCCCCcccChHHHHHH-----HHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           85 IVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        85 ~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      ++||+||+|+.+.....+.....     ...+++++++||++|.||+++|.+|++.+.+.
T Consensus       269 iilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~~  328 (329)
T 3o47_A          269 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ  328 (329)
T ss_dssp             EEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC-
T ss_pred             EEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHhc
Confidence            99999999997643222222111     11234799999999999999999999988653

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.83  E-value=7.6e-21  Score=153.76  Aligned_cols=128  Identities=15%  Similarity=0.116  Sum_probs=95.4

Q ss_pred             ccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCC----------hhhHHhHHHHHHHH
Q 029854            7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA----------RLTYKNVPTWHRDL   76 (186)
Q Consensus         7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~----------~~s~~~i~~~~~~~   76 (186)
                      +.||+|++...  +.++  .+.+++||||||+.++.+|..++++++++|||||+++          ..++.+...|+..+
T Consensus       185 r~~T~Gi~~~~--~~~~--~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i  260 (362)
T 1zcb_A          185 RRPTKGIHEYD--FEIK--NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETI  260 (362)
T ss_dssp             CCCCSSEEEEE--EEET--TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHH
T ss_pred             cCCccceEEEE--eeeC--CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHH
Confidence            45678887643  4333  5899999999999999999999999999999999999          67899988999888


Q ss_pred             Hhh--cCCCCEEEEEeCCCCCCcc-----------------cCh-HHHHHH--------H---HcCCcEEEeccCCCCCc
Q 029854           77 CRV--CENIPIVLCGNKVDVKNRQ-----------------VKA-KQVTFH--------R---KKNLQYYEISAKSNYNF  125 (186)
Q Consensus        77 ~~~--~~~~p~ilv~nK~Dl~~~~-----------------~~~-~~~~~~--------~---~~~~~~~~~Sa~~~~gi  125 (186)
                      ...  ..+.|+||++||+|+.+..                 +.. +...++        +   ..++.++++||++|.||
T Consensus       261 ~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV  340 (362)
T 1zcb_A          261 VNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENI  340 (362)
T ss_dssp             HTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHH
T ss_pred             hcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhH
Confidence            764  3689999999999986311                 222 233443        1   33567899999999999


Q ss_pred             hHHHHHHHHHHhC
Q 029854          126 EKPFLYLARKLAG  138 (186)
Q Consensus       126 ~~l~~~l~~~i~~  138 (186)
                      .++|.++.+.+..
T Consensus       341 ~~vF~~v~~~i~~  353 (362)
T 1zcb_A          341 RLVFRDVKDTILH  353 (362)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988864

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.83  E-value=4.7e-21  Score=152.70  Aligned_cols=130  Identities=15%  Similarity=0.123  Sum_probs=102.4

Q ss_pred             ccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCC----------ChhhHHhHHHHHHHH
Q 029854            7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT----------ARLTYKNVPTWHRDL   76 (186)
Q Consensus         7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~----------~~~s~~~i~~~~~~~   76 (186)
                      +.||+|+......+    +.+.+++|||+||++++.+|..|+++++++|+|||++          +..++.+...|+..+
T Consensus       151 r~~TiGi~~~~~~~----~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i  226 (327)
T 3ohm_A          151 RVPTTGIIEYPFDL----QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTI  226 (327)
T ss_dssp             CCCCCSEEEEEEEE----TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHH
T ss_pred             cCceeeEEEEEEEe----eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHH
Confidence            67889976554333    4589999999999999999999999999999999655          667788888888887


Q ss_pred             Hhhc--CCCCEEEEEeCCCCCCcc-----------------cCh-HHHHHH----------HHcCCcEEEeccCCCCCch
Q 029854           77 CRVC--ENIPIVLCGNKVDVKNRQ-----------------VKA-KQVTFH----------RKKNLQYYEISAKSNYNFE  126 (186)
Q Consensus        77 ~~~~--~~~p~ilv~nK~Dl~~~~-----------------~~~-~~~~~~----------~~~~~~~~~~Sa~~~~gi~  126 (186)
                      ....  .+.|++|++||+|+.+..                 ... ++.+++          ...++.++++||+++.||+
T Consensus       227 ~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~  306 (327)
T 3ohm_A          227 ITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIR  306 (327)
T ss_dssp             HTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHH
T ss_pred             hhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHH
Confidence            6542  689999999999986422                 222 233442          2234568899999999999


Q ss_pred             HHHHHHHHHHhCCC
Q 029854          127 KPFLYLARKLAGDP  140 (186)
Q Consensus       127 ~l~~~l~~~i~~~~  140 (186)
                      .+|..+.+.+.+..
T Consensus       307 ~vF~~v~~~Il~~~  320 (327)
T 3ohm_A          307 FVFAAVKDTILQLN  320 (327)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998654

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.82  E-value=3.7e-20  Score=146.84  Aligned_cols=129  Identities=22%  Similarity=0.264  Sum_probs=105.8

Q ss_pred             ccccccceEEEEEEEEEECCeEEEEEEEeCCCcccc-----CCccccccccCcEEEEEEeCCChhhHHhHHHHHH---HH
Q 029854            5 VWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-----GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHR---DL   76 (186)
Q Consensus         5 ~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-----~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~---~~   76 (186)
                      ..+.||++.++....+  ++ .+.+++|||||+++|     ..++..+++++|++|+|||++++.+|+++..|..   .+
T Consensus        33 ~~~~~Ti~~~~~~~~~--~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l  109 (307)
T 3r7w_A           33 RRLGATIDVEHSHLRF--LG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQL  109 (307)
T ss_dssp             GGCCCCCSEEEEEEEE--TT-TEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHH
T ss_pred             cCcCCccceEEEEEEe--CC-ceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHH
Confidence            3688999999886544  44 689999999999998     7889999999999999999999999999877654   44


Q ss_pred             HhhcCCCCEEEEEeCCCCCC---cc----cC-hHHHHHHHHcC---CcEEEeccCCCCCchHHHHHHHHHHh
Q 029854           77 CRVCENIPIVLCGNKVDVKN---RQ----VK-AKQVTFHRKKN---LQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus        77 ~~~~~~~p~ilv~nK~Dl~~---~~----~~-~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                      ....++.|+++|+||+|+.+   +.    +. .+..+++..++   ++++++||++ .|+.++|..++..+.
T Consensus       110 ~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~li  180 (307)
T 3r7w_A          110 RKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSLI  180 (307)
T ss_dssp             HHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTTC
T ss_pred             HHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHHc
Confidence            44457899999999999976   21    22 33457888886   7899999999 899999999887654

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.81  E-value=1.1e-19  Score=136.14  Aligned_cols=129  Identities=16%  Similarity=0.158  Sum_probs=90.9

Q ss_pred             CccccccceEEEEEEEEEECCe-EEEEEEEeCCCccccCC-ccccccccCcEEEEEEeCCChh-hHHhHHHHHHH-HHhh
Q 029854            4 SVWGKATIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFGG-LRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRD-LCRV   79 (186)
Q Consensus         4 ~~~~~~Tig~~~~~~~~~~~~~-~~~l~l~Dt~G~~~~~~-~~~~~~~~ad~vilv~D~~~~~-s~~~i~~~~~~-~~~~   79 (186)
                      ...|. |++.++..  +.+++. .+.++||||||+++|.. ++..++++++++|+|||+++.. ++..+..|+.. +...
T Consensus        33 ~~~~~-~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~  109 (214)
T 2fh5_B           33 RDTQT-SITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDS  109 (214)
T ss_dssp             CCBCC-CCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccC-CcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhh
Confidence            34454 55566664  555554 68999999999999988 8889999999999999999854 46665554444 3332


Q ss_pred             ---cCCCCEEEEEeCCCCCCcccChHHH-HHH---H---------------------------------Hc--CCcEEEe
Q 029854           80 ---CENIPIVLCGNKVDVKNRQVKAKQV-TFH---R---------------------------------KK--NLQYYEI  117 (186)
Q Consensus        80 ---~~~~p~ilv~nK~Dl~~~~~~~~~~-~~~---~---------------------------------~~--~~~~~~~  117 (186)
                         ..+.|+++|+||+|+.+........ .+.   .                                 .+  +++|++|
T Consensus       110 ~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  189 (214)
T 2fh5_B          110 MALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLEC  189 (214)
T ss_dssp             HTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEEC
T ss_pred             hhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEe
Confidence               2478999999999997543221111 111   1                                 11  5679999


Q ss_pred             ccCCC------CCchHHHHHHHHH
Q 029854          118 SAKSN------YNFEKPFLYLARK  135 (186)
Q Consensus       118 Sa~~~------~gi~~l~~~l~~~  135 (186)
                      ||++|      .||+++|.+|.+.
T Consensus       190 SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          190 SAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             BCC-------CCBCHHHHHHHHHH
T ss_pred             eccCCCccccccChHHHHHHHHHh
Confidence            99999      9999999999875

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.81  E-value=9.1e-20  Score=131.60  Aligned_cols=124  Identities=16%  Similarity=0.128  Sum_probs=93.0

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCC------ccccccc--cCcEEEEEEeCCChhhHHhHHHHHHHHH
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLC   77 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~------~~~~~~~--~ad~vilv~D~~~~~s~~~i~~~~~~~~   77 (186)
                      .+.|+++.+.....+.+++  ..+++|||||++.+..      +...+++  +++++++|+|+++..+   ...|+..+.
T Consensus        31 ~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~---~~~~~~~~~  105 (165)
T 2wji_A           31 GNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALER---NLYLTLQLM  105 (165)
T ss_dssp             C-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHHH---HHHHHHHHH
T ss_pred             cCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchhH---hHHHHHHHH
Confidence            4456666666666666655  5789999999998763      3356665  8999999999998543   445777766


Q ss_pred             hhcCCCCEEEEEeCCCCCC-cccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029854           78 RVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        78 ~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      +  .+.|+++|+||+|+.. +.+..+...++..++++++++||++|.|++++|.++.+.+
T Consensus       106 ~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          106 E--MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV  163 (165)
T ss_dssp             H--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred             h--cCCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence            5  3799999999999864 3333345677888899999999999999999999998875

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.81  E-value=7.6e-21  Score=152.08  Aligned_cols=128  Identities=13%  Similarity=0.159  Sum_probs=102.4

Q ss_pred             ccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCC----------ChhhHHhHHHHHHHH
Q 029854            7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT----------ARLTYKNVPTWHRDL   76 (186)
Q Consensus         7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~----------~~~s~~~i~~~~~~~   76 (186)
                      +.||+|+......+    +.+.+++|||+||++++.+|..|+++++++|+|||++          +..++.+...|+..+
T Consensus       145 ~~~TiGi~~~~~~~----~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i  220 (340)
T 4fid_A          145 RTKTTGIHEYDFVV----KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDI  220 (340)
T ss_dssp             CCCCCSCEEEEEES----SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHH
T ss_pred             ccceeeeEEEEEEe----eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHH
Confidence            67789977664443    5689999999999999999999999999999999999          678898888888888


Q ss_pred             Hhhc--CCCCEEEEEeCCCCCCccc-----------------ChHHHHHH-HHc--------------------------
Q 029854           77 CRVC--ENIPIVLCGNKVDVKNRQV-----------------KAKQVTFH-RKK--------------------------  110 (186)
Q Consensus        77 ~~~~--~~~p~ilv~nK~Dl~~~~~-----------------~~~~~~~~-~~~--------------------------  110 (186)
                      ....  .+.|++|++||+|+.+..+                 ..++.+++ .++                          
T Consensus       221 ~~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (340)
T 4fid_A          221 MTNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNE  300 (340)
T ss_dssp             HHCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------C
T ss_pred             hhhhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCc
Confidence            7642  6899999999999853111                 11222322 122                          


Q ss_pred             CCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854          111 NLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus       111 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      ++.++++||+++.||+.+|..+.+.|.+
T Consensus       301 ~iy~h~TsA~dt~nv~~vF~~v~~~Il~  328 (340)
T 4fid_A          301 KVYTNPTNATDGSNIKRVFMLAVDVIMK  328 (340)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence            3568899999999999999999999876

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.79  E-value=4.4e-19  Score=128.69  Aligned_cols=131  Identities=15%  Similarity=0.139  Sum_probs=94.6

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN   82 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~   82 (186)
                      +...+.||++.++....+.+++.  .+.+|||||++.|..++..+++.+|++|+|||+++....... .++..+..  .+
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~l~~~~~--~~  107 (178)
T 2lkc_A           33 VTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTV-EAINHAKA--AN  107 (178)
T ss_dssp             SSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHH-HHHHHHGG--GS
T ss_pred             cccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHh--CC
Confidence            34456777777777667777765  457999999999999999999999999999999984322211 12222222  47


Q ss_pred             CCEEEEEeCCCCCCcccChHHHHHHHHc-------C--CcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           83 IPIVLCGNKVDVKNRQVKAKQVTFHRKK-------N--LQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        83 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      .|+++|+||+|+.+... ..........       +  ++++++||++|.|++++|++|++.+...
T Consensus       108 ~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~  172 (178)
T 2lkc_A          108 VPIIVAINKMDKPEANP-DRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEME  172 (178)
T ss_dssp             CCEEEEEETTTSSCSCH-HHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEECccCCcCCH-HHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhh
Confidence            89999999999975321 1222222222       1  4799999999999999999999888654

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.77  E-value=1.9e-19  Score=152.50  Aligned_cols=136  Identities=17%  Similarity=0.212  Sum_probs=100.7

Q ss_pred             CCccccccceEEEEEEE------EEE--CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHH
Q 029854            3 VSVWGKATIGVEVHPLD------FFT--NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHR   74 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~------~~~--~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~   74 (186)
                      +...+.||+|.++..+.      +.+  ++..+.+.+|||||++.|..++..++++++++|+|||+++.   +.+..|+.
T Consensus        66 ~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~  142 (535)
T 3dpu_A           66 FDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD---SNKHYWLR  142 (535)
T ss_dssp             ---------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG---GGHHHHHH
T ss_pred             CCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc---hhHHHHHH
Confidence            34568899999988652      222  34568999999999999999999999999999999999864   56778999


Q ss_pred             HHHhhcCCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCC
Q 029854           75 DLCRVCENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN  141 (186)
Q Consensus        75 ~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  141 (186)
                      .+....++.|+++|+||+|+.+ +.+..+ ...++...+.+++++||++|.||+++|..+.+.+.+...
T Consensus       143 ~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~~~~  211 (535)
T 3dpu_A          143 HIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHPDS  211 (535)
T ss_dssp             HHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHHHHTCTTS
T ss_pred             HHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHHhcccc
Confidence            9998877899999999999975 333333 446666778899999999999999999999999987653

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.77  E-value=2e-18  Score=126.53  Aligned_cols=128  Identities=16%  Similarity=0.140  Sum_probs=101.1

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCC------ccccccc--cCcEEEEEEeCCChhhHHhHHHHHHHHH
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLC   77 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~------~~~~~~~--~ad~vilv~D~~~~~s~~~i~~~~~~~~   77 (186)
                      .+.|+++.+.....+.+++  +.+.+|||||++.+..      ++..++.  .++++++|+|.++   ++....|+..+.
T Consensus        35 ~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~  109 (188)
T 2wjg_A           35 GNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLM  109 (188)
T ss_dssp             EECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHH
T ss_pred             cCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHH
Confidence            4567777777777776665  6789999999998853      4566665  4999999999986   455667877776


Q ss_pred             hhcCCCCEEEEEeCCCCCC-cccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029854           78 RVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus        78 ~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                      .  .+.|+++|+||+|+.. +.+......++..++++++++||++|.|++++|.++++.+.+..
T Consensus       110 ~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          110 E--MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKDKK  171 (188)
T ss_dssp             T--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred             h--cCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHhcc
Confidence            5  4789999999999864 33334556788888999999999999999999999999987654

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.76  E-value=3.2e-18  Score=135.73  Aligned_cols=133  Identities=15%  Similarity=0.125  Sum_probs=102.4

Q ss_pred             EEEEEEEeCCCccccC----------CccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 029854           26 KIRFYCWDTAGQEKFG----------GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK   95 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~----------~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~   95 (186)
                      ..++.||||||+..+.          ..+..+++++|++|+|+|+++..++.+...|++.+...  +.|+++|+||+|+.
T Consensus        58 ~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~--~~pvilV~NK~Dl~  135 (308)
T 3iev_A           58 EAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL--NKPVIVVINKIDKI  135 (308)
T ss_dssp             TEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG--CCCEEEEEECGGGS
T ss_pred             CCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc--CCCEEEEEECccCC
Confidence            6788999999986654          45677889999999999999988888877788887763  78999999999997


Q ss_pred             -CcccChH-HHHHHHHcC--CcEEEeccCCCCCchHHHHHHHHHHhCCCCcccccCCCCCCCccccCHH
Q 029854           96 -NRQVKAK-QVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLA  160 (186)
Q Consensus        96 -~~~~~~~-~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~  160 (186)
                       +...... ...+...++  .+++++||++|.|++++|..+.+.+.+.+...........+.+....+.
T Consensus       136 ~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~td~~~~~~~~e~  204 (308)
T 3iev_A          136 GPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEGEPLFPEDMITDLPLRLLAAEI  204 (308)
T ss_dssp             SSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBCCCSSCTTCCBCCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCccCCCCCCcccccCCCHHHHHHHH
Confidence             4444333 335666664  6899999999999999999999999877665544444444444433333

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.75  E-value=3.8e-19  Score=129.39  Aligned_cols=124  Identities=15%  Similarity=0.082  Sum_probs=91.5

Q ss_pred             cccceEEEEEEEEEECCeEEEEEEEeCCCccccCCcc--------ccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh
Q 029854            8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR--------DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV   79 (186)
Q Consensus         8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~--------~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~   79 (186)
                      .|+++.++....+.+++.  .+.+|||||++.+....        ..+++++|++++|||++++.+++ ...|+..+.+.
T Consensus        35 ~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~  111 (172)
T 2gj8_A           35 IAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVD-PAEIWPEFIAR  111 (172)
T ss_dssp             STTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCS-HHHHCHHHHHH
T ss_pred             CCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHHh
Confidence            345556677777777775  47899999997653221        23578999999999999988876 45787777665


Q ss_pred             c-CCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           80 C-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        80 ~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      . .+.|+++|+||+|+.+...     .++...+.+++++||++|.|++++|.++.+.+...
T Consensus       112 ~~~~~p~ilv~NK~Dl~~~~~-----~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~  167 (172)
T 2gj8_A          112 LPAKLPITVVRNKADITGETL-----GMSEVNGHALIRLSARTGEGVDVLRNHLKQSMGFD  167 (172)
T ss_dssp             SCTTCCEEEEEECHHHHCCCC-----EEEEETTEEEEECCTTTCTTHHHHHHHHHHHC---
T ss_pred             cccCCCEEEEEECccCCcchh-----hhhhccCCceEEEeCCCCCCHHHHHHHHHHHhhhc
Confidence            4 4799999999999854211     11122457899999999999999999999887543

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.74  E-value=2.3e-18  Score=122.86  Aligned_cols=121  Identities=17%  Similarity=0.118  Sum_probs=83.7

Q ss_pred             cccceEEEEEEEEEECCeEEEEEEEeCCCcccc-------CCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc
Q 029854            8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-------GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC   80 (186)
Q Consensus         8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~   80 (186)
                      .|++..++....+..++.  .+.+|||||+..+       ...+..+++.+|++|+|+|+++..+...  .|+...... 
T Consensus        32 ~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~-  106 (161)
T 2dyk_A           32 VPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQAD--YEVAEYLRR-  106 (161)
T ss_dssp             ------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHH--HHHHHHHHH-
T ss_pred             CCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhH--HHHHHHHHh-
Confidence            344445556666666665  6789999999874       3345567889999999999998644322  222222222 


Q ss_pred             CCCCEEEEEeCCCCCCcccChHHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHH
Q 029854           81 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      .+.|+++|+||+|+.+..  ....+++ ..++ +++++||++|.|++++|+++++.+
T Consensus       107 ~~~p~ilv~nK~Dl~~~~--~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          107 KGKPVILVATKVDDPKHE--LYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWERL  160 (161)
T ss_dssp             HTCCEEEEEECCCSGGGG--GGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred             cCCCEEEEEECcccccch--HhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence            378999999999997542  2223444 5676 899999999999999999998865

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.74  E-value=1.2e-17  Score=126.51  Aligned_cols=114  Identities=14%  Similarity=0.116  Sum_probs=84.9

Q ss_pred             EEEEEEEeCCCccccC---------CccccccccCcEEEEEEeCCChhhHHh--HHHHHHHHHhhcCCCCEEEEEeCCCC
Q 029854           26 KIRFYCWDTAGQEKFG---------GLRDGYYIHGQCAIIMFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVDV   94 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~---------~~~~~~~~~ad~vilv~D~~~~~s~~~--i~~~~~~~~~~~~~~p~ilv~nK~Dl   94 (186)
                      .+.+.||||||+....         .....++..+|++|+|||++++.+|..  ...|+..+....++.|+++|+||+|+
T Consensus        75 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl  154 (228)
T 2qu8_A           75 LNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDK  154 (228)
T ss_dssp             TEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGG
T ss_pred             CCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCccc
Confidence            3689999999984311         112345778999999999999888752  24567666665558999999999999


Q ss_pred             CC-cccChH----HHHHHHHcC--CcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           95 KN-RQVKAK----QVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        95 ~~-~~~~~~----~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      .+ +.+...    ...++...+  ++++++||++|.||+++|.+|++.+...
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~  206 (228)
T 2qu8_A          155 CNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKND  206 (228)
T ss_dssp             CC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHH
Confidence            75 333332    335666666  7899999999999999999999988643

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.73  E-value=1.4e-18  Score=127.25  Aligned_cols=130  Identities=14%  Similarity=0.108  Sum_probs=95.4

Q ss_pred             CccccccceEEEEEEEEEECCeEEEEEEEeCCC-----------ccccCCcccccccc-CcEEEEEEeCCChhhHHhH-H
Q 029854            4 SVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAG-----------QEKFGGLRDGYYIH-GQCAIIMFDVTARLTYKNV-P   70 (186)
Q Consensus         4 ~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G-----------~~~~~~~~~~~~~~-ad~vilv~D~~~~~s~~~i-~   70 (186)
                      ...+.|++..+...  +.++    .+.+|||||           ++.+..++..++++ ++++++||++.+..++..+ .
T Consensus        27 ~~~~~~~~t~~~~~--~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~  100 (190)
T 2cxx_A           27 RRGKRPGVTRKIIE--IEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIK  100 (190)
T ss_dssp             SSSSSTTCTTSCEE--EEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHH
T ss_pred             ccCCCCCccceeEE--EecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHH
Confidence            44556665544333  3323    688999999           67777788888887 8888888888888888776 5


Q ss_pred             HHHHH--------HHhh--cCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCc-------EEEeccCCCCCchHHHHHHH
Q 029854           71 TWHRD--------LCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ-------YYEISAKSNYNFEKPFLYLA  133 (186)
Q Consensus        71 ~~~~~--------~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~Sa~~~~gi~~l~~~l~  133 (186)
                      .|...        +...  ..+.|+++|+||+|+.... ......++..++.+       ++++||++|.|++++|.+++
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  179 (190)
T 2cxx_A          101 RWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIF  179 (190)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHH
T ss_pred             hhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHH
Confidence            67653        2222  2579999999999997644 23345677777764       79999999999999999999


Q ss_pred             HHHhCCC
Q 029854          134 RKLAGDP  140 (186)
Q Consensus       134 ~~i~~~~  140 (186)
                      +.+.+..
T Consensus       180 ~~~~~~~  186 (190)
T 2cxx_A          180 EVIRERQ  186 (190)
T ss_dssp             HHHHHC-
T ss_pred             Hhcchhh
Confidence            9987654

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.72  E-value=1.6e-17  Score=122.34  Aligned_cols=126  Identities=13%  Similarity=0.152  Sum_probs=85.5

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCC----------ccccCCccccccccC---cEEEEEEeCCChhhHHhHHHH
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAG----------QEKFGGLRDGYYIHG---QCAIIMFDVTARLTYKNVPTW   72 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G----------~~~~~~~~~~~~~~a---d~vilv~D~~~~~s~~~i~~~   72 (186)
                      .+.+|.|.......+.+++   .+.+|||||          ++.+..++..+++.+   +++++|+|+++..++.... +
T Consensus        51 ~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~  126 (195)
T 1svi_A           51 RTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-M  126 (195)
T ss_dssp             ---------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-H
T ss_pred             ccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-H
Confidence            4566776666555555544   589999999          777777888888877   9999999999987776532 2


Q ss_pred             HHHHHhhcCCCCEEEEEeCCCCCCcccChH-HHHHHH----HcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854           73 HRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFHR----KKNLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus        73 ~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                      ...+..  .+.|+++|+||+|+.+...... ..++..    ..+.+++++||++|.|++++|+++.+.+.
T Consensus       127 ~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          127 YEFLKY--YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             HHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             HHHHHH--cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence            222222  4789999999999975432222 122222    23578999999999999999999998764

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.72  E-value=6.1e-17  Score=125.37  Aligned_cols=125  Identities=11%  Similarity=0.058  Sum_probs=95.1

Q ss_pred             ccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCcc------cccc--ccCcEEEEEEeCCChhhHHhHHHHHHHHHh
Q 029854            7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR------DGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCR   78 (186)
Q Consensus         7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~------~~~~--~~ad~vilv~D~~~~~s~~~i~~~~~~~~~   78 (186)
                      +.|++.++.....+..+  .+.+.||||||+..+...+      +.++  .++|++|+|+|+++..+.   ..|...+.+
T Consensus        34 ~~pg~tv~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~---~~~~~~l~~  108 (258)
T 3a1s_A           34 NWPGVTVEKKEGVFTYK--GYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQS---LYLLLEILE  108 (258)
T ss_dssp             ECTTSCCEEEEEEEEET--TEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHH---HHHHHHHHT
T ss_pred             CCCCceEEEEEEEEEEC--CeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhH---HHHHHHHHh
Confidence            34555555554444433  4789999999999887643      5666  589999999999986543   346666655


Q ss_pred             hcCCCCEEEEEeCCCCCC-cccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           79 VCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        79 ~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      .  +.|+++|+||+|+.. +.+......++..++++++++||++|.|++++|+++.+.+..
T Consensus       109 ~--~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~~  167 (258)
T 3a1s_A          109 M--EKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQK  167 (258)
T ss_dssp             T--TCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred             c--CCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHhhc
Confidence            3  799999999999864 333344567888899999999999999999999999988753

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.70  E-value=1.8e-17  Score=128.24  Aligned_cols=123  Identities=14%  Similarity=0.082  Sum_probs=95.1

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCC----------cccccc--ccCcEEEEEEeCCChhhHHhHHHHH
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG----------LRDGYY--IHGQCAIIMFDVTARLTYKNVPTWH   73 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~----------~~~~~~--~~ad~vilv~D~~~~~s~~~i~~~~   73 (186)
                      .+.|++.++.....+.+++.  .+.||||||+..+..          +++.++  .++|++|+|+|+++..++..+..| 
T Consensus        29 ~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~~-  105 (256)
T 3iby_A           29 GNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQ-  105 (256)
T ss_dssp             EECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHHH-
T ss_pred             cCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHHH-
Confidence            34577777777777777765  788999999988764          456677  889999999999997665544333 


Q ss_pred             HHHHhhcCCCCEEEEEeCCCCCCcc-cChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHH
Q 029854           74 RDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  135 (186)
Q Consensus        74 ~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  135 (186)
                        +..  .+.|+++|+||+|+.... .......+...++++++++||++|.|++++|.++.+.
T Consensus       106 --l~~--~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          106 --LFE--LGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             --HTT--SCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred             --HHH--cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence              333  278999999999987432 2233456778889999999999999999999999876

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.69  E-value=2.6e-16  Score=131.42  Aligned_cols=127  Identities=11%  Similarity=0.007  Sum_probs=79.4

Q ss_pred             ccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCcc--------ccccccCcEEEEEEeCCChhhHHhHHHHHHHHHh
Q 029854            7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR--------DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR   78 (186)
Q Consensus         7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~--------~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~   78 (186)
                      ..|++..++....+.+++  +.+.||||||++.+...+        ..+++.||++|+|+|++++.+++.+..+...+..
T Consensus       263 ~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~  340 (476)
T 3gee_A          263 HMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAA  340 (476)
T ss_dssp             ----------CEEEEETT--EEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHH
T ss_pred             CCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHh
Confidence            345555677666777766  468899999998776443        4478999999999999999888654443333332


Q ss_pred             hcCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854           79 VCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus        79 ~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                       ..+.|+++|+||+|+.+..... ...+......+++++||++|.||+++|+++.+.+.
T Consensus       341 -l~~~piIvV~NK~Dl~~~~~~~-~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          341 -HPAAKFLTVANKLDRAANADAL-IRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             -CTTSEEEEEEECTTSCTTTHHH-HHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred             -cCCCCEEEEEECcCCCCccchh-HHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence             2379999999999997543221 12343332478999999999999999999999987

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.68  E-value=1e-16  Score=136.98  Aligned_cols=114  Identities=13%  Similarity=0.132  Sum_probs=94.5

Q ss_pred             CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChH
Q 029854           23 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK  102 (186)
Q Consensus        23 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~  102 (186)
                      ++..+.+.||||||+..|...+..+++.+|++|+|+|+++..+++....|.....   .+.|+++|+||+|+.+......
T Consensus        67 ~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~---~~ipiIvViNKiDl~~a~~~~v  143 (599)
T 3cb4_D           67 DGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME---MDLEVVPVLNKIDLPAADPERV  143 (599)
T ss_dssp             TSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH---TTCEEEEEEECTTSTTCCHHHH
T ss_pred             CCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEeeeccCcccccHHHH
Confidence            5667999999999999999999999999999999999999877777777766554   3789999999999986543222


Q ss_pred             HHHHHHHcCC---cEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854          103 QVTFHRKKNL---QYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus       103 ~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      ..++...+++   +++.+||++|.|++++|+++.+.+...
T Consensus       144 ~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p  183 (599)
T 3cb4_D          144 AEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPP  183 (599)
T ss_dssp             HHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCc
Confidence            3456666666   499999999999999999999887643

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.68  E-value=1.9e-16  Score=116.20  Aligned_cols=125  Identities=17%  Similarity=0.232  Sum_probs=87.8

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCC----------ccccCCccccccccC---cEEEEEEeCCChhhH--HhHH
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAG----------QEKFGGLRDGYYIHG---QCAIIMFDVTARLTY--KNVP   70 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G----------~~~~~~~~~~~~~~a---d~vilv~D~~~~~s~--~~i~   70 (186)
                      .+.+|.|..........+.   .+.+|||||          ++.+..++..+++.+   +++++|+|+++..+.  ..+.
T Consensus        50 ~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~  126 (195)
T 3pqc_A           50 FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMV  126 (195)
T ss_dssp             CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHH
T ss_pred             cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHH
Confidence            4556666555444443333   477999999          666777778888776   999999999876433  3334


Q ss_pred             HHHHHHHhhcCCCCEEEEEeCCCCCCcccCh----HHHHHHHHc-CCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           71 TWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        71 ~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~----~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      .|+...     +.|+++|+||+|+.+.....    ....++... +++++++||++|.||+++|+++.+.+.+
T Consensus       127 ~~~~~~-----~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          127 EWMKSL-----NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             HHHHHT-----TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             HHHHHc-----CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence            454432     68999999999997532211    223444443 3689999999999999999999988754

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.67  E-value=4.3e-17  Score=127.14  Aligned_cols=120  Identities=15%  Similarity=0.127  Sum_probs=92.6

Q ss_pred             eEEEEEEEEEECCeEEEEEEEeCCCccccC------Cccccccc--cCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCC
Q 029854           12 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFG------GLRDGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI   83 (186)
Q Consensus        12 g~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~------~~~~~~~~--~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~   83 (186)
                      |..+..+...++. .+.+++|||||+..+.      .+++.++.  ++|++|+|+|+++..++   ..|...+.+  .+.
T Consensus        35 g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~---~~~~~~l~~--~~~  108 (272)
T 3b1v_A           35 GVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERN---LYLTTQLIE--TGI  108 (272)
T ss_dssp             CCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHH---HHHHHHHHH--TCS
T ss_pred             CCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhH---HHHHHHHHh--cCC
Confidence            3344444555555 6789999999999886      34566775  69999999999986543   356666655  479


Q ss_pred             CEEEEEeCCCCCC-cccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854           84 PIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus        84 p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                      |+++|+||+|+.. +.+......++..++++++++||++|.|++++|.++.+.+.
T Consensus       109 p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~  163 (272)
T 3b1v_A          109 PVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTTT  163 (272)
T ss_dssp             CEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHSCT
T ss_pred             CEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHHHh
Confidence            9999999999864 33344456788888999999999999999999999988654

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.67  E-value=3.1e-16  Score=129.07  Aligned_cols=124  Identities=17%  Similarity=0.169  Sum_probs=93.8

Q ss_pred             cceEEEEEEEEEECCeEEEEEEEeCCCccccCCccc-------cccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCC
Q 029854           10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD-------GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN   82 (186)
Q Consensus        10 Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~-------~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~   82 (186)
                      ++..+...+.+.+.+. ..+.||||||+..+..+..       .+++++|++|+|+|++...   ....|+..+...  +
T Consensus        67 gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~--~  140 (423)
T 3qq5_A           67 GTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTP---YEDDVVNLFKEM--E  140 (423)
T ss_dssp             ---CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCCH---HHHHHHHHHHHT--T
T ss_pred             CeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCChH---HHHHHHHHHHhc--C
Confidence            3334555556665544 2788999999998876643       4788999999999994332   235677777665  7


Q ss_pred             CCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           83 IPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        83 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      .|+++|+||+|+...........++..++++++++||++|.|++++|+.+.+.+.+.
T Consensus       141 ~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          141 IPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPGD  197 (423)
T ss_dssp             CCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred             CCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhhhh
Confidence            999999999999865544444566667788999999999999999999999999665

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.66  E-value=3e-16  Score=133.97  Aligned_cols=113  Identities=15%  Similarity=0.208  Sum_probs=93.6

Q ss_pred             CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChH
Q 029854           23 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK  102 (186)
Q Consensus        23 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~  102 (186)
                      ++..+.+.||||||+..|...+..+++.+|++|+|+|+++..+++....|.....   .+.|+++++||+|+.+......
T Consensus        69 dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~---~~ipiIvviNKiDl~~a~~~~v  145 (600)
T 2ywe_A           69 DGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE---QDLVIIPVINKIDLPSADVDRV  145 (600)
T ss_dssp             TSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH---TTCEEEEEEECTTSTTCCHHHH
T ss_pred             CCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH---CCCCEEEEEeccCccccCHHHH
Confidence            5667999999999999999888889999999999999999888887777766543   3789999999999986543222


Q ss_pred             HHHHHHHcCC---cEEEeccCCCCCchHHHHHHHHHHhC
Q 029854          103 QVTFHRKKNL---QYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus       103 ~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      ..++...+++   +++++||++|.|++++|+++++.+..
T Consensus       146 ~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~  184 (600)
T 2ywe_A          146 KKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPP  184 (600)
T ss_dssp             HHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence            3355565665   49999999999999999999988864

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.66  E-value=5.9e-16  Score=120.44  Aligned_cols=130  Identities=16%  Similarity=0.101  Sum_probs=99.6

Q ss_pred             ccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCC------cccccc--ccCcEEEEEEeCCChhhHHhHHHHHHHH
Q 029854            5 VWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDL   76 (186)
Q Consensus         5 ~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~------~~~~~~--~~ad~vilv~D~~~~~s~~~i~~~~~~~   76 (186)
                      ..+.|+++++.....+..++.  .+.+|||||+..+..      +++.++  .++|++|+|+|+++...   ...|...+
T Consensus        30 ~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~---~~~~~~~~  104 (271)
T 3k53_A           30 VGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLMR---NLFLTLEL  104 (271)
T ss_dssp             EEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHHH---HHHHHHHH
T ss_pred             cCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcchh---hHHHHHHH
Confidence            345677888888777777665  488999999998876      566666  68999999999998532   33444454


Q ss_pred             HhhcCCCCEEEEEeCCCCCC-cccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029854           77 CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus        77 ~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                      .+. ...|+++|+||+|+.+ +........+...++++++++||++|.|+.++|..+.+.+....
T Consensus       105 ~~~-~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~~~~  168 (271)
T 3k53_A          105 FEM-EVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAEGKV  168 (271)
T ss_dssp             HHT-TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHHTCC
T ss_pred             Hhc-CCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHhccc
Confidence            443 2399999999999864 22333355777888999999999999999999999999886553

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.65  E-value=1.2e-16  Score=124.59  Aligned_cols=127  Identities=15%  Similarity=0.114  Sum_probs=94.1

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCc----------ccccc--ccCcEEEEEEeCCChhhHHhHHHHH
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL----------RDGYY--IHGQCAIIMFDVTARLTYKNVPTWH   73 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~----------~~~~~--~~ad~vilv~D~~~~~s~~~i~~~~   73 (186)
                      .+.|++..+.....+..++.  .+.||||||+..+...          ++.++  +.+|++|+|+|+++..+...   |.
T Consensus        31 ~~~~g~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~---~~  105 (274)
T 3i8s_A           31 GNWAGVTVERKEGQFSTTDH--QVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLY---LT  105 (274)
T ss_dssp             EECTTSSSEEEEEEEECSSC--EEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHH---HH
T ss_pred             CCCCCeeEEEEEEEEEeCCC--ceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHH---HH
Confidence            34566667777777766654  5678999999887742          22333  68999999999998665444   44


Q ss_pred             HHHHhhcCCCCEEEEEeCCCCCCc-ccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           74 RDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        74 ~~~~~~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      ..+.+.  +.|+++|+||+|+.+. ........++..++++++++||++|.|++++|.++.+.+...
T Consensus       106 ~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~~~~  170 (274)
T 3i8s_A          106 LQLLEL--GIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKANE  170 (274)
T ss_dssp             HHHHHH--TCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred             HHHHhc--CCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence            444443  7999999999998642 222334577788899999999999999999999998877544

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.65  E-value=1.8e-15  Score=122.16  Aligned_cols=113  Identities=18%  Similarity=0.176  Sum_probs=89.3

Q ss_pred             EEEEEEEeCCCccccCCc---------cccccccCcEEEEEEeCCChh--hHHhHHHHHHHHHhhcCCCCEEEEEeCCCC
Q 029854           26 KIRFYCWDTAGQEKFGGL---------RDGYYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVCENIPIVLCGNKVDV   94 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~~---------~~~~~~~ad~vilv~D~~~~~--s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl   94 (186)
                      ...+.+|||||...+...         ...+...+|++++|+|+++..  +++....|+..+.....+.|+++|+||+|+
T Consensus       213 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl  292 (357)
T 2e87_A          213 YFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDV  292 (357)
T ss_dssp             TEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTT
T ss_pred             CceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECccc
Confidence            467899999998654221         113445699999999999877  677778899988876668999999999999


Q ss_pred             CCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           95 KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      .......+...++...+++++++||++|.|+++++.++.+.+..
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~  336 (357)
T 2e87_A          293 ADEENIKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRP  336 (357)
T ss_dssp             CCHHHHHHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHHH
Confidence            75432233456666778999999999999999999999988853

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.63  E-value=1.9e-16  Score=125.11  Aligned_cols=114  Identities=18%  Similarity=0.153  Sum_probs=84.1

Q ss_pred             eEEEEEEEeCCCccc--------cCCccccccccCcEEEEEEeCCChhhHHhHHHHH-HHHHhhcCCCCEEEEEeCCCCC
Q 029854           25 GKIRFYCWDTAGQEK--------FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWH-RDLCRVCENIPIVLCGNKVDVK   95 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~--------~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~-~~~~~~~~~~p~ilv~nK~Dl~   95 (186)
                      ...++.||||||+..        +......++++||++++|+|+++..+..  ..|+ +.+.+..++.|+++|+||+|+.
T Consensus        53 ~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~~~~p~ilV~NK~Dl~  130 (301)
T 1wf3_A           53 GRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPLVGKVPILLVGNKLDAA  130 (301)
T ss_dssp             TTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGTTTSCEEEEEECGGGC
T ss_pred             CCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhcCCCCEEEEEECcccC
Confidence            457899999999876        3445667889999999999999875544  3454 4555544579999999999997


Q ss_pred             CcccChHHHHHHHHc-C-CcEEEeccCCCCCchHHHHHHHHHHhCCCCc
Q 029854           96 NRQVKAKQVTFHRKK-N-LQYYEISAKSNYNFEKPFLYLARKLAGDPNL  142 (186)
Q Consensus        96 ~~~~~~~~~~~~~~~-~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~  142 (186)
                      +...  .....+..+ + .+++++||++|.|++++|+.+.+.+.+.+..
T Consensus       131 ~~~~--~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~~~~~  177 (301)
T 1wf3_A          131 KYPE--EAMKAYHELLPEAEPRMLSALDERQVAELKADLLALMPEGPFF  177 (301)
T ss_dssp             SSHH--HHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTCCBCCCS
T ss_pred             CchH--HHHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhcccCCCC
Confidence            5322  022233332 2 4689999999999999999999888765543

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.63  E-value=4.3e-16  Score=129.59  Aligned_cols=127  Identities=16%  Similarity=0.088  Sum_probs=89.2

Q ss_pred             ccccceEEEEEEEEEECCeEEEEEEEeCCC----------ccccCCcccc-ccccCcEEEEEEeCCChhhHHhHHHHHHH
Q 029854            7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAG----------QEKFGGLRDG-YYIHGQCAIIMFDVTARLTYKNVPTWHRD   75 (186)
Q Consensus         7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G----------~~~~~~~~~~-~~~~ad~vilv~D~~~~~s~~~i~~~~~~   75 (186)
                      ..|+++.+.....+..++.  .++||||||          +++|..++.. +++.||++|+|+|+++..+.. ...|...
T Consensus       225 ~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~  301 (456)
T 4dcu_A          225 NVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGY  301 (456)
T ss_dssp             C------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHH
T ss_pred             CCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHH
Confidence            4455556665566666665  788999999          6677666554 778999999999999854422 2455555


Q ss_pred             HHhhcCCCCEEEEEeCCCCCCcc-cC-hHHHHHHHHc-----CCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           76 LCRVCENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKK-----NLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        76 ~~~~~~~~p~ilv~nK~Dl~~~~-~~-~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      +..  .+.|+++|+||+|+.+.. .. .+..+.+...     +++++++||++|.||+++|..+.+.+..
T Consensus       302 ~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~  369 (456)
T 4dcu_A          302 AHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASEN  369 (456)
T ss_dssp             HHH--TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             HHH--cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHH
Confidence            554  479999999999997532 22 2333444433     4789999999999999999999987754

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.63  E-value=4.2e-16  Score=117.14  Aligned_cols=113  Identities=17%  Similarity=0.043  Sum_probs=79.4

Q ss_pred             CeEEEEEEEeCCCc----------cccCCcccccccc---CcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEe
Q 029854           24 CGKIRFYCWDTAGQ----------EKFGGLRDGYYIH---GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGN   90 (186)
Q Consensus        24 ~~~~~l~l~Dt~G~----------~~~~~~~~~~~~~---ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~n   90 (186)
                      .....+.||||||.          +.+..+...+++.   +|++|+|+|+++..+.. ...|+..+..  .+.|+++|+|
T Consensus        76 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~--~~~p~i~v~n  152 (223)
T 4dhe_A           76 AAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP--TGKPIHSLLT  152 (223)
T ss_dssp             TTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG--GCCCEEEEEE
T ss_pred             CCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh--cCCCEEEEEe
Confidence            44578889999994          4445566667666   88899999999754422 2345555544  4789999999


Q ss_pred             CCCCCCcccCh----HHHHHHHH-------cCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           91 KVDVKNRQVKA----KQVTFHRK-------KNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        91 K~Dl~~~~~~~----~~~~~~~~-------~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      |+|+.+.....    ...+....       .+.+++++||++|.|++++|.+|.+.+...
T Consensus       153 K~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~  212 (223)
T 4dhe_A          153 KCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA  212 (223)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred             ccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence            99997533211    11222222       456899999999999999999999988654

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.62  E-value=3.3e-17  Score=122.91  Aligned_cols=110  Identities=15%  Similarity=0.120  Sum_probs=80.2

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCcccccccc----CcEEEEEEeCC-ChhhHHhHHHHHHHHHhh-
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH----GQCAIIMFDVT-ARLTYKNVPTWHRDLCRV-   79 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~----ad~vilv~D~~-~~~s~~~i~~~~~~~~~~-   79 (186)
                      .+.||++.++         ..+.+.+|||||++.+..++..+++.    ++++|+|||++ ++.+|..+..|+..+... 
T Consensus        43 ~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~  113 (218)
T 1nrj_B           43 SQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSIT  113 (218)
T ss_dssp             CSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHH
T ss_pred             ecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcc
Confidence            3566665444         45678999999999999999999887    99999999999 888999988898887664 


Q ss_pred             ----cCCCCEEEEEeCCCCCCcccC--------hHHHHHHHHcCCcEEEeccCCCCC
Q 029854           80 ----CENIPIVLCGNKVDVKNRQVK--------AKQVTFHRKKNLQYYEISAKSNYN  124 (186)
Q Consensus        80 ----~~~~p~ilv~nK~Dl~~~~~~--------~~~~~~~~~~~~~~~~~Sa~~~~g  124 (186)
                          ..+.|+++|+||+|+......        .+...++...+.+++++||++|.+
T Consensus       114 ~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~  170 (218)
T 1nrj_B          114 ESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEE  170 (218)
T ss_dssp             HHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred             cccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence                258999999999999754321        223356666677899999998875

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.61  E-value=5.8e-16  Score=128.16  Aligned_cols=126  Identities=14%  Similarity=0.102  Sum_probs=88.2

Q ss_pred             cccceEEEEEEEEEECCeEEEEEEEeCCCcc----------ccCCccc-cccccCcEEEEEEeCCChhhHHhHHHHHHHH
Q 029854            8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQE----------KFGGLRD-GYYIHGQCAIIMFDVTARLTYKNVPTWHRDL   76 (186)
Q Consensus         8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~----------~~~~~~~-~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~   76 (186)
                      .|++..+.....+.+++..  ++||||||+.          .|..++. .+++.||++|+|+|+++..++++. .|+..+
T Consensus       206 ~~gtT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~  282 (436)
T 2hjg_A          206 VAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYA  282 (436)
T ss_dssp             --------CCEEEEETTEE--EEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHH
T ss_pred             CCCceeeeeEEEEEECCeE--EEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHH
Confidence            4555566666677777764  7899999984          3433333 478899999999999998888775 577666


Q ss_pred             HhhcCCCCEEEEEeCCCCCCcccC--hHHH-HHHHH----cCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           77 CRVCENIPIVLCGNKVDVKNRQVK--AKQV-TFHRK----KNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        77 ~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~-~~~~~----~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      ..  .+.|+++|+||+|+.+....  .+.. .+...    .+++++++||++|.|++++|..+.+.+..
T Consensus       283 ~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~  349 (436)
T 2hjg_A          283 HE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASEN  349 (436)
T ss_dssp             HH--TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             HH--cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHH
Confidence            54  47999999999999753221  1222 22222    35789999999999999999999988764

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.60  E-value=1.2e-15  Score=122.53  Aligned_cols=113  Identities=20%  Similarity=0.314  Sum_probs=91.2

Q ss_pred             EEEEEEeCCCcc----ccCCcccccccc---CcEEEEEEeCCC---hhhHHhHHHHHHHHHhhc---CCCCEEEEEeCCC
Q 029854           27 IRFYCWDTAGQE----KFGGLRDGYYIH---GQCAIIMFDVTA---RLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVD   93 (186)
Q Consensus        27 ~~l~l~Dt~G~~----~~~~~~~~~~~~---ad~vilv~D~~~---~~s~~~i~~~~~~~~~~~---~~~p~ilv~nK~D   93 (186)
                      ..+.||||||+.    .+..+...+++.   ++++|+|+|+++   +.+++++..|...+..+.   .+.|+++|+||+|
T Consensus       206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~D  285 (342)
T 1lnz_A          206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMD  285 (342)
T ss_dssp             CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTT
T ss_pred             ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECcc
Confidence            478899999964    345566666654   999999999998   788999999999988864   4799999999999


Q ss_pred             CCCcccChHHHHHHHHcC--CcEEEeccCCCCCchHHHHHHHHHHhCCCC
Q 029854           94 VKNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAGDPN  141 (186)
Q Consensus        94 l~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  141 (186)
                      +....  .....++..++  .+++++||+++.|+++++.+|.+.+.+...
T Consensus       286 l~~~~--e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~  333 (342)
T 1lnz_A          286 MPEAA--ENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTPE  333 (342)
T ss_dssp             STTHH--HHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred             CCCCH--HHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhhCcc
Confidence            97532  22345566665  689999999999999999999999976553

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.59  E-value=3.1e-15  Score=125.00  Aligned_cols=122  Identities=17%  Similarity=0.093  Sum_probs=88.3

Q ss_pred             cccceEEEEEEEEEECCeEEEEEEEeCCCcc-ccCCc--------cccccccCcEEEEEEeCCChhhHHhHHHHHHHHHh
Q 029854            8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQE-KFGGL--------RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR   78 (186)
Q Consensus         8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~-~~~~~--------~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~   78 (186)
                      .|++..++....+.+++.  .+.||||||++ .+...        ...+++.||++|+|+|++++.+++... +++.+  
T Consensus       274 ~~gTT~d~~~~~i~~~g~--~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~-il~~l--  348 (482)
T 1xzp_A          274 IPGTTRDVISEEIVIRGI--LFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRK-ILERI--  348 (482)
T ss_dssp             SSCCSSCSCCEEEEETTE--EEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHH-HHHHH--
T ss_pred             CCCeeeeeEEEEEecCCe--EEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHH-HHHHh--
Confidence            344445666667777664  57899999998 65432        345788999999999999988776542 22222  


Q ss_pred             hcCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854           79 VCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus        79 ~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                        .+.|+++|+||+|+.+.....+...++ ..+.+++++||++|.|+++++.+|.+.+.
T Consensus       349 --~~~piivV~NK~DL~~~~~~~~~~~~~-~~~~~~i~iSAktg~Gi~eL~~~l~~~~~  404 (482)
T 1xzp_A          349 --KNKRYLVVINKVDVVEKINEEEIKNKL-GTDRHMVKISALKGEGLEKLEESIYRETQ  404 (482)
T ss_dssp             --TTSSEEEEEEECSSCCCCCHHHHHHHH-TCSTTEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred             --cCCCEEEEEECcccccccCHHHHHHHh-cCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence              478999999999997532112222322 23468999999999999999999999865

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.59  E-value=4.3e-15  Score=121.80  Aligned_cols=112  Identities=16%  Similarity=0.124  Sum_probs=87.9

Q ss_pred             EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHH--
Q 029854           26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ--  103 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~--  103 (186)
                      ...+.||||||++.|...+..+++.+|++|+|+|+++..++.+...|+..+... ...|+++|+||+|+.+.....+.  
T Consensus        74 ~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~~~~~~  152 (403)
T 3sjy_A           74 LRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GVKNLIIVQNKVDVVSKEEALSQYR  152 (403)
T ss_dssp             EEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHHHH
T ss_pred             cceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CCCCEEEEEECccccchHHHHHHHH
Confidence            378999999999999999999999999999999999876666677777665544 24689999999999754322121  


Q ss_pred             --HHHHHHc---CCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854          104 --VTFHRKK---NLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus       104 --~~~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                        .++....   +++++++||++|.|++++++.|.+.+..
T Consensus       153 ~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~  192 (403)
T 3sjy_A          153 QIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT  192 (403)
T ss_dssp             HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence              1222222   4689999999999999999999987754

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.58  E-value=1.9e-14  Score=118.09  Aligned_cols=128  Identities=14%  Similarity=0.060  Sum_probs=83.8

Q ss_pred             cccc--cceEEEEEEEEEEC---------------C----eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCC--
Q 029854            6 WGKA--TIGVEVHPLDFFTN---------------C----GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA--   62 (186)
Q Consensus         6 ~~~~--Tig~~~~~~~~~~~---------------~----~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~--   62 (186)
                      ++.+  |++..|....+...               +    ....+.||||||++.|...+...+..+|++|+|+|+++  
T Consensus        39 e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~  118 (408)
T 1s0u_A           39 ELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPC  118 (408)
T ss_dssp             ----CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCS
T ss_pred             cccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCC
Confidence            4445  88877776555321               1    13789999999999998777777888999999999995  


Q ss_pred             --hhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccC----hHHHHHHHH---cCCcEEEeccCCCCCchHHHHHHH
Q 029854           63 --RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AKQVTFHRK---KNLQYYEISAKSNYNFEKPFLYLA  133 (186)
Q Consensus        63 --~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~----~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l~  133 (186)
                        +.+++.+..|    . .....|+++++||+|+.+....    .+..+++..   .+++++++||++|.|+++++++|.
T Consensus       119 ~~~qt~e~l~~~----~-~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~  193 (408)
T 1s0u_A          119 PQPQTKEHLMAL----E-ILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQ  193 (408)
T ss_dssp             SCHHHHHHHHHH----H-HTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHH
T ss_pred             CCchhHHHHHHH----H-HcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHH
Confidence              4455444322    2 2234589999999999753321    223344443   257899999999999999999999


Q ss_pred             HHHhC
Q 029854          134 RKLAG  138 (186)
Q Consensus       134 ~~i~~  138 (186)
                      ..+..
T Consensus       194 ~~i~~  198 (408)
T 1s0u_A          194 DFIPT  198 (408)
T ss_dssp             HHSCC
T ss_pred             HhCCC
Confidence            87754

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.58  E-value=2.6e-15  Score=126.83  Aligned_cols=70  Identities=17%  Similarity=0.162  Sum_probs=58.1

Q ss_pred             eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCc
Q 029854           25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR   97 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~   97 (186)
                      ..+.+.||||||+.+|...+..+++.+|++|+|+|+++..+.+...-|. .+..  .++|+++|+||+|+...
T Consensus        80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~--~~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           80 KDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL--RHTPIMTFINKMDRDTR  149 (528)
T ss_dssp             TTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT--TTCCEEEEEECTTSCCS
T ss_pred             CCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH--cCCCEEEEEeCCCCccc
Confidence            4578999999999999999999999999999999999977776655553 3333  37899999999999753

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.57  E-value=1e-15  Score=127.74  Aligned_cols=119  Identities=18%  Similarity=0.180  Sum_probs=69.1

Q ss_pred             ccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCCh---hhHHhHHHHHHHHHhhc-CC
Q 029854            7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVC-EN   82 (186)
Q Consensus         7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~---~s~~~i~~~~~~~~~~~-~~   82 (186)
                      ..+|++..+..  +..+  ...+.||||||+++|...+..+++.+|++|+|+|+++.   .+|+...+|.+.+.... .+
T Consensus       105 ~giTi~~~~~~--~~~~--~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~  180 (467)
T 1r5b_A          105 KGKTVEVGRAY--FETE--HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQG  180 (467)
T ss_dssp             --------CCE--EECS--SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred             cCceEEeeeEE--EecC--CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcC
Confidence            45677665543  3333  46789999999999999989999999999999999986   35543334444333322 46


Q ss_pred             CC-EEEEEeCCCCCCcc--------cChHHHHHHHHc-------CCcEEEeccCCCCCchHHH
Q 029854           83 IP-IVLCGNKVDVKNRQ--------VKAKQVTFHRKK-------NLQYYEISAKSNYNFEKPF  129 (186)
Q Consensus        83 ~p-~ilv~nK~Dl~~~~--------~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi~~l~  129 (186)
                      .| +++++||+|+.+..        +..+...++...       +++++++||++|.|+.+++
T Consensus       181 vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          181 INHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             CSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             CCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence            77 99999999996421        112234555554       3569999999999998876

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.57  E-value=4.6e-16  Score=131.30  Aligned_cols=128  Identities=15%  Similarity=0.117  Sum_probs=89.7

Q ss_pred             ccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEE
Q 029854            7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV   86 (186)
Q Consensus         7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~i   86 (186)
                      +.|+++.++....+...+ ...+.||||||++.|..++..+++.+|++|+|+|+++....+....| ..+..  .+.|++
T Consensus        33 ~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l-~~~~~--~~vPiI  108 (537)
T 3izy_P           33 EAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESI-QHAKD--AHVPIV  108 (537)
T ss_dssp             SSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHH-HHHHT--TTCCEE
T ss_pred             cCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHH-HHHHH--cCCcEE
Confidence            455666555544444322 23688999999999999999999999999999999986554433222 22222  478999


Q ss_pred             EEEeCCCCCCcccC---hHHHHH---HHHc--CCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           87 LCGNKVDVKNRQVK---AKQVTF---HRKK--NLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        87 lv~nK~Dl~~~~~~---~~~~~~---~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      +++||+|+.+....   .....+   +..+  .++++++||++|.|++++|+.+...+..
T Consensus       109 VViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~  168 (537)
T 3izy_P          109 LAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAEM  168 (537)
T ss_dssp             ECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHTT
T ss_pred             EEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhhc
Confidence            99999999753221   111111   1111  2479999999999999999999987753

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.56  E-value=5.1e-15  Score=122.61  Aligned_cols=124  Identities=13%  Similarity=0.112  Sum_probs=85.2

Q ss_pred             ccccceEEEEEEEEEECCeEEEEEEEeCCCcccc---------CCccccccccCcEEEEEEeCCChhhHHh--HHHHHHH
Q 029854            7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF---------GGLRDGYYIHGQCAIIMFDVTARLTYKN--VPTWHRD   75 (186)
Q Consensus         7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~---------~~~~~~~~~~ad~vilv~D~~~~~s~~~--i~~~~~~   75 (186)
                      ..|++..+.....+.+++.  .+++|||||++..         ...+..++++||++|+|+|+++..+..+  +..|+..
T Consensus        31 ~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~  108 (439)
T 1mky_A           31 DEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRK  108 (439)
T ss_dssp             -------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHH
T ss_pred             CCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3455555666667777776  4688999998752         3345678899999999999988655432  3334332


Q ss_pred             HHhhcCCCCEEEEEeCCCCCCcccChHH-HHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           76 LCRVCENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        76 ~~~~~~~~p~ilv~nK~Dl~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                           .+.|+++|+||+|+.... .... ..++ .+++ +++++||++|.|+.++|+++.+.+.+.
T Consensus       109 -----~~~p~ilv~NK~D~~~~~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~  167 (439)
T 1mky_A          109 -----STVDTILVANKAENLREF-EREVKPELY-SLGFGEPIPVSAEHNINLDTMLETIIKKLEEK  167 (439)
T ss_dssp             -----HTCCEEEEEESCCSHHHH-HHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             -----cCCCEEEEEeCCCCcccc-HHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHHhcccc
Confidence                 278999999999985321 1122 3333 4566 799999999999999999999998743

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.56  E-value=1.1e-14  Score=120.54  Aligned_cols=121  Identities=18%  Similarity=0.168  Sum_probs=81.8

Q ss_pred             cccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhh---HHhHHHHHHHHHhh-cCCC
Q 029854            8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT---YKNVPTWHRDLCRV-CENI   83 (186)
Q Consensus         8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s---~~~i~~~~~~~~~~-~~~~   83 (186)
                      .+.+.+++....+..+  ...+.||||||+++|...+..+++.||++|+|+|+++...   |+...++.+.+... ..+.
T Consensus        78 ~~GiTid~~~~~~~~~--~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v  155 (439)
T 3j2k_7           78 DKGKTVEVGRAYFETE--KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGV  155 (439)
T ss_pred             hcCceEEEeEEEEecC--CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCC
Confidence            3555556655555444  4588999999999999988999999999999999998532   22111222222221 1356


Q ss_pred             C-EEEEEeCCCCCCcc--------cChHHHHHHHHcC------CcEEEeccCCCCCchHHHH
Q 029854           84 P-IVLCGNKVDVKNRQ--------VKAKQVTFHRKKN------LQYYEISAKSNYNFEKPFL  130 (186)
Q Consensus        84 p-~ilv~nK~Dl~~~~--------~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~  130 (186)
                      | +++++||+|+....        +..+...++...+      ++++++||++|.|+.+++.
T Consensus       156 ~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          156 KHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             CeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            7 99999999996421        1112224444444      4699999999999999765

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.55  E-value=1.5e-14  Score=114.23  Aligned_cols=96  Identities=16%  Similarity=0.083  Sum_probs=80.2

Q ss_pred             ccccCCccccccccCcEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCccc---ChHHHHHHHHcCC
Q 029854           37 QEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTFHRKKNL  112 (186)
Q Consensus        37 ~~~~~~~~~~~~~~ad~vilv~D~~~~~-s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~---~~~~~~~~~~~~~  112 (186)
                      ++++..+.+.+++++|++++|+|++++. ++..+..|+..+..  .+.|+++|+||+|+.+...   ..+...++...++
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~--~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~  143 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY--FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGY  143 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTC
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh--CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCC
Confidence            7889999999999999999999999886 89888999987765  4799999999999975421   2233456667788


Q ss_pred             cEEEeccCCCCCchHHHHHHHH
Q 029854          113 QYYEISAKSNYNFEKPFLYLAR  134 (186)
Q Consensus       113 ~~~~~Sa~~~~gi~~l~~~l~~  134 (186)
                      +++++||++|.|+++++..+..
T Consensus       144 ~~~~~SA~~g~gi~~L~~~l~G  165 (302)
T 2yv5_A          144 DVLKVSAKTGEGIDELVDYLEG  165 (302)
T ss_dssp             EEEECCTTTCTTHHHHHHHTTT
T ss_pred             eEEEEECCCCCCHHHHHhhccC
Confidence            9999999999999999987643

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.55  E-value=7.3e-15  Score=122.22  Aligned_cols=124  Identities=12%  Similarity=0.067  Sum_probs=81.4

Q ss_pred             cccceEEEEEEEEEECCeEEEEEEEeCCCccccCCc--------cccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh
Q 029854            8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV   79 (186)
Q Consensus         8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~--------~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~   79 (186)
                      .|++..++....+.+++.  .+.||||||++.+...        ...+++.+|++|+|+|++++.+... ..|+..+   
T Consensus       255 ~~gtT~d~~~~~i~~~g~--~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l---  328 (462)
T 3geh_A          255 LPGTTRDVVESQLVVGGI--PVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQV---  328 (462)
T ss_dssp             CTTCCHHHHHHEEEETTE--EEEECC--------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHH---
T ss_pred             CCCeeEEEEEEEEEECCE--EEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhc---
Confidence            455556666566666765  5689999998766443        3346889999999999998766554 3454444   


Q ss_pred             cCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029854           80 CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus        80 ~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                       ...|+++|+||+|+.+.........+.  .+.+++++||++|.|+++++.++.+.+....
T Consensus       329 -~~~piivV~NK~Dl~~~~~~~~~~~~~--~~~~~i~iSAktg~Gi~eL~~~i~~~~~~~~  386 (462)
T 3geh_A          329 -KHRPLILVMNKIDLVEKQLITSLEYPE--NITQIVHTAAAQKQGIDSLETAILEIVQTGK  386 (462)
T ss_dssp             -TTSCEEEEEECTTSSCGGGSTTCCCCT--TCCCEEEEBTTTTBSHHHHHHHHHHHHTTSS
T ss_pred             -cCCcEEEEEECCCCCcchhhHHHHHhc--cCCcEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence             347999999999997543222111111  3568999999999999999999999886543

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.54  E-value=2.1e-15  Score=124.77  Aligned_cols=107  Identities=15%  Similarity=0.123  Sum_probs=79.2

Q ss_pred             CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-----CC-CCEEEEEeCCCCCC
Q 029854           23 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----EN-IPIVLCGNKVDVKN   96 (186)
Q Consensus        23 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-----~~-~p~ilv~nK~Dl~~   96 (186)
                      +...+.+.||||||+++|...+..+++.+|++|+|+|+++ .+|+.+..|..+..+..     .+ .|+++++||+|+.+
T Consensus        80 ~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~  158 (435)
T 1jny_A           80 ETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTE  158 (435)
T ss_dssp             ECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSS
T ss_pred             ecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCC
Confidence            3455689999999999999888889999999999999999 68876544433332211     24 46999999999976


Q ss_pred             cc--------cChHHHHHHHHcC-----CcEEEeccCCCCCchHHHH
Q 029854           97 RQ--------VKAKQVTFHRKKN-----LQYYEISAKSNYNFEKPFL  130 (186)
Q Consensus        97 ~~--------~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~  130 (186)
                      ..        +..+...++..++     ++++++||++|.|+.+++.
T Consensus       159 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          159 PPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             ccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence            21        1222345556555     6799999999999986654

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.53  E-value=1.3e-14  Score=121.47  Aligned_cols=119  Identities=19%  Similarity=0.139  Sum_probs=85.0

Q ss_pred             ccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCC---hhhHHhHHHHHHHHHhhcCCCCE
Q 029854            9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA---RLTYKNVPTWHRDLCRVCENIPI   85 (186)
Q Consensus         9 ~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~---~~s~~~i~~~~~~~~~~~~~~p~   85 (186)
                      .|+...+..  +.+++  ..+.||||||++.|...+..+++.+|++|+|+|+++   +.+++.+    ..+..  .+.|+
T Consensus        59 iTi~~~~~~--~~~~~--~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l----~~~~~--~~ip~  128 (482)
T 1wb1_A           59 ITIDIGFSA--FKLEN--YRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHM----LILDH--FNIPI  128 (482)
T ss_dssp             -----CCCE--EEETT--EEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHH----HHHHH--TTCCB
T ss_pred             cEEecceEE--EEECC--EEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHH----HHHHH--cCCCE
Confidence            455444443  33343  688999999999998888889999999999999998   4444433    22222  36889


Q ss_pred             EEEEeCCCCCCccc----ChHHHHHHHHc----CCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854           86 VLCGNKVDVKNRQV----KAKQVTFHRKK----NLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus        86 ilv~nK~Dl~~~~~----~~~~~~~~~~~----~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                      ++++||+|+.+...    ..+...++...    +.+++++||++|.|+++++++|.+.+.
T Consensus       129 IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          129 IVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             CEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence            99999999975321    12223444444    578999999999999999999999875

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.53  E-value=1e-13  Score=118.46  Aligned_cols=104  Identities=21%  Similarity=0.216  Sum_probs=78.7

Q ss_pred             EEEEEeCCCccccCCccccccccCcEEEEEEeCCC---hhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCccc-----
Q 029854           28 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-----   99 (186)
Q Consensus        28 ~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~---~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-----   99 (186)
                      .+.||||||++.|..++..+++.+|++|+|+|+++   +.+++.+..    +..  .+.|+++++||+|+.+...     
T Consensus        71 ~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~--~~vPiIVViNKiDl~~~~~~~~~~  144 (594)
T 1g7s_A           71 GLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM--YRTPFVVAANKIDRIHGWRVHEGR  144 (594)
T ss_dssp             EEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH--TTCCEEEEEECGGGSTTCCCCTTC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH--cCCeEEEEecccccccccccccCC
Confidence            58999999999999999999999999999999999   666665432    222  4789999999999964210     


Q ss_pred             ---------ChH-----------HHHHHHHcC---------------CcEEEeccCCCCCchHHHHHHHHHHh
Q 029854          100 ---------KAK-----------QVTFHRKKN---------------LQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus       100 ---------~~~-----------~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                               ...           ......+.+               ++++.+||++|.|+.++++++...+.
T Consensus       145 ~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          145 PFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             CHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             chHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence                     000           001111111               37999999999999999999998775

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.52  E-value=1.3e-13  Score=113.23  Aligned_cols=129  Identities=14%  Similarity=0.047  Sum_probs=91.2

Q ss_pred             ccccc--cceEEEEEEEEEEC---------------C----eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCC-
Q 029854            5 VWGKA--TIGVEVHPLDFFTN---------------C----GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA-   62 (186)
Q Consensus         5 ~~~~~--Tig~~~~~~~~~~~---------------~----~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~-   62 (186)
                      .++.+  |++..|....+...               +    ....+.||||||++.|.......+..+|++|+|+|+++ 
T Consensus        40 ~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g  119 (410)
T 1kk1_A           40 EELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEP  119 (410)
T ss_dssp             GGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSC
T ss_pred             hhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCC
Confidence            34445  88877776555321               1    13789999999999988777777888999999999995 


Q ss_pred             ---hhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCccc----ChHHHHHHHH---cCCcEEEeccCCCCCchHHHHHH
Q 029854           63 ---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRK---KNLQYYEISAKSNYNFEKPFLYL  132 (186)
Q Consensus        63 ---~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~l  132 (186)
                         +.+++.+..|    ... ...|+++++||+|+.+...    ..+..+++..   .+++++++||++|.|+++++++|
T Consensus       120 ~~~~qt~e~l~~~----~~~-~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l  194 (410)
T 1kk1_A          120 CPRPQTREHLMAL----QII-GQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAI  194 (410)
T ss_dssp             SSCHHHHHHHHHH----HHH-TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHH
T ss_pred             CCChhHHHHHHHH----HHc-CCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHH
Confidence               3444443322    222 2468999999999976321    1122233333   35789999999999999999999


Q ss_pred             HHHHhC
Q 029854          133 ARKLAG  138 (186)
Q Consensus       133 ~~~i~~  138 (186)
                      ...+..
T Consensus       195 ~~~~~~  200 (410)
T 1kk1_A          195 EDFIPT  200 (410)
T ss_dssp             HHHSCC
T ss_pred             HHhCCC
Confidence            987754

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.51  E-value=4.1e-15  Score=123.05  Aligned_cols=126  Identities=17%  Similarity=0.135  Sum_probs=78.8

Q ss_pred             cccceEEEEEEEEEECCeEEEEEEEeCCCcc--------ccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh
Q 029854            8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQE--------KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV   79 (186)
Q Consensus         8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~--------~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~   79 (186)
                      .+|.|+........+......+.+|||||++        .+...+..++++||++|+|+|+++..++.+  .|+..+.+.
T Consensus        32 ~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l~~  109 (436)
T 2hjg_A           32 EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKILYR  109 (436)
T ss_dssp             ---------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHTT
T ss_pred             cCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHHH
Confidence            4455655444444444444578999999986        566677888999999999999998766543  343333322


Q ss_pred             cCCCCEEEEEeCCCCCCcccChHHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           80 CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        80 ~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                       .+.|+++|+||+|+.+...  ...++. ..++ +++++||++|.|+.++++++.+.+.+.
T Consensus       110 -~~~pvilv~NK~D~~~~~~--~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~  166 (436)
T 2hjg_A          110 -TKKPVVLAVNKLDNTEMRA--NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFKNI  166 (436)
T ss_dssp             -CCSCEEEEEECCCC-------CCCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHTGGGC
T ss_pred             -cCCCEEEEEECccCccchh--hHHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHhcCcc
Confidence             4789999999999874321  111222 3454 789999999999999999999988653

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.50  E-value=6.2e-14  Score=110.71  Aligned_cols=114  Identities=18%  Similarity=0.128  Sum_probs=82.7

Q ss_pred             eEEEEEEEeCCCcc---------ccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 029854           25 GKIRFYCWDTAGQE---------KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK   95 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~---------~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~   95 (186)
                      ...++.+|||||+.         .+......+++.+|++++|+|+++ -+  ....|+-.... ..+.|+++++||+|+.
T Consensus        54 ~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~-~~~~P~ilvlNK~D~~  129 (301)
T 1ega_A           54 GAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WT--PDDEMVLNKLR-EGKAPVILAVNKVDNV  129 (301)
T ss_dssp             TTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CC--HHHHHHHHHHH-SSSSCEEEEEESTTTC
T ss_pred             CCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CC--HHHHHHHHHHH-hcCCCEEEEEECcccC
Confidence            34688899999987         455667788999999999999987 22  22334433222 1478999999999997


Q ss_pred             C-cccChH-HHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhCCCCc
Q 029854           96 N-RQVKAK-QVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAGDPNL  142 (186)
Q Consensus        96 ~-~~~~~~-~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~  142 (186)
                      . +....+ ...+...++. .++.+||++|.|++++++.+...+.+.+..
T Consensus       130 ~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~~~~~~  179 (301)
T 1ega_A          130 QEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHH  179 (301)
T ss_dssp             CCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCBCCCS
T ss_pred             ccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCCcCCCC
Confidence            5 222112 2344445565 699999999999999999999888766543

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.50  E-value=1.4e-14  Score=121.24  Aligned_cols=107  Identities=17%  Similarity=0.091  Sum_probs=71.4

Q ss_pred             ECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhH-----HHHHHHHHhhcCCCCEEEEEeCCCCCC
Q 029854           22 TNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-----PTWHRDLCRVCENIPIVLCGNKVDVKN   96 (186)
Q Consensus        22 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i-----~~~~~~~~~~~~~~p~ilv~nK~Dl~~   96 (186)
                      ++...+.+.||||||+++|...+..+++.||++|+|+|+++..++..+     ..+...+.......|+++|+||+|+.+
T Consensus       106 ~~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~  185 (483)
T 3p26_A          106 FSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD  185 (483)
T ss_dssp             EECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGT
T ss_pred             EecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCccc
Confidence            344567899999999999999999999999999999999987543221     111112222223357999999999975


Q ss_pred             c-cc-ChH----HHHHHHHc-----CCcEEEeccCCCCCchHH
Q 029854           97 R-QV-KAK----QVTFHRKK-----NLQYYEISAKSNYNFEKP  128 (186)
Q Consensus        97 ~-~~-~~~----~~~~~~~~-----~~~~~~~Sa~~~~gi~~l  128 (186)
                      . .. ..+    ...+....     +++++++||++|.|+.++
T Consensus       186 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el  228 (483)
T 3p26_A          186 WSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  228 (483)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred             chHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence            2 11 111    12333333     357999999999999863

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.49  E-value=9.5e-15  Score=119.78  Aligned_cols=115  Identities=13%  Similarity=0.033  Sum_probs=84.6

Q ss_pred             EEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC-EEEEEeCCCCCCcc
Q 029854           20 FFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQ   98 (186)
Q Consensus        20 ~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~   98 (186)
                      ..++.....+.||||||+++|...+..+++.+|++|+|+|+++.... ....|+..+...  +.| +++++||+|+.+..
T Consensus        68 ~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~~--~ip~iivviNK~Dl~~~~  144 (405)
T 2c78_A           68 VEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV--GVPYIVVFMNKVDMVDDP  144 (405)
T ss_dssp             EEEECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHT--TCCCEEEEEECGGGCCCH
T ss_pred             eEeccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHHc--CCCEEEEEEECccccCcH
Confidence            34444557889999999999988888889999999999999986543 345566555443  678 89999999997421


Q ss_pred             -c----ChHHHHHHHHcC-----CcEEEeccCCCCC------------------chHHHHHHHHHHh
Q 029854           99 -V----KAKQVTFHRKKN-----LQYYEISAKSNYN------------------FEKPFLYLARKLA  137 (186)
Q Consensus        99 -~----~~~~~~~~~~~~-----~~~~~~Sa~~~~g------------------i~~l~~~l~~~i~  137 (186)
                       .    ..+...++..++     ++++++||++|.|                  +.++++.+...+.
T Consensus       145 ~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp  211 (405)
T 2c78_A          145 ELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP  211 (405)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence             1    112335555554     6899999999987                  6777777776654

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.49  E-value=3.3e-14  Score=117.59  Aligned_cols=103  Identities=20%  Similarity=0.170  Sum_probs=75.9

Q ss_pred             eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcc------
Q 029854           25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ------   98 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~------   98 (186)
                      ....+.||||||+++|...+..+++.+|++|+|+|+++....+ ...|+..+... ...|+++|+||+|+.+..      
T Consensus       102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~~-~~~~iIvviNK~Dl~~~~~~~~~~  179 (434)
T 1zun_B          102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLL-GIKHIVVAINKMDLNGFDERVFES  179 (434)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHT-TCCEEEEEEECTTTTTSCHHHHHH
T ss_pred             CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc-CCCeEEEEEEcCcCCcccHHHHHH
Confidence            4567899999999999888888899999999999999864322 33444444332 223699999999997521      


Q ss_pred             cChHHHHHHHHcC-----CcEEEeccCCCCCchHHH
Q 029854           99 VKAKQVTFHRKKN-----LQYYEISAKSNYNFEKPF  129 (186)
Q Consensus        99 ~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~  129 (186)
                      +..+...+++.++     ++++++||++|.|+.+++
T Consensus       180 i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~  215 (434)
T 1zun_B          180 IKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS  215 (434)
T ss_dssp             HHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred             HHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence            1122335566666     679999999999999854

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.48  E-value=4e-14  Score=115.81  Aligned_cols=113  Identities=10%  Similarity=-0.039  Sum_probs=82.6

Q ss_pred             ECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC-EEEEEeCCCCCCcc--
Q 029854           22 TNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQ--   98 (186)
Q Consensus        22 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~--   98 (186)
                      ++.....+.||||||+++|...+..+++.+|++|+|+|+++....+.. .++..+..  .+.| +++++||+|+.+..  
T Consensus        61 ~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l~~~~~--~~vp~iivviNK~Dl~~~~~~  137 (397)
T 1d2e_A           61 YSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTR-EHLLLARQ--IGVEHVVVYVNKADAVQDSEM  137 (397)
T ss_dssp             EECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHHHH--TTCCCEEEEEECGGGCSCHHH
T ss_pred             eccCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHH-HHHHHHHH--cCCCeEEEEEECcccCCCHHH
Confidence            344556888999999999988888889999999999999986443332 23333333  3678 78999999997421  


Q ss_pred             ---cChHHHHHHHHcC-----CcEEEeccCCCCC----------chHHHHHHHHHHh
Q 029854           99 ---VKAKQVTFHRKKN-----LQYYEISAKSNYN----------FEKPFLYLARKLA  137 (186)
Q Consensus        99 ---~~~~~~~~~~~~~-----~~~~~~Sa~~~~g----------i~~l~~~l~~~i~  137 (186)
                         ...+..+++..++     ++++++||++|.|          +.++++.+...+.
T Consensus       138 ~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p  194 (397)
T 1d2e_A          138 VELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (397)
T ss_dssp             HHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence               1123345666655     5899999999774          8888988887765

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.47  E-value=6e-14  Score=113.76  Aligned_cols=123  Identities=4%  Similarity=-0.125  Sum_probs=87.4

Q ss_pred             ccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCE-
Q 029854            7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-   85 (186)
Q Consensus         7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~-   85 (186)
                      +..|++..+..  +  ......+.||||||+++|.......++.+|++|+|+| +. ..+.+...|+..+...  +.|. 
T Consensus        44 ~giTi~~~~~~--~--~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~-g~~~qt~e~~~~~~~~--~i~~~  115 (370)
T 2elf_A           44 KGTSSDITMYN--N--DKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ-GLDAHTGECIIALDLL--GFKHG  115 (370)
T ss_dssp             EEEESSSEEEE--E--CSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT-CCCHHHHHHHHHHHHT--TCCEE
T ss_pred             CCEEEEeeEEE--E--ecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC-CCcHHHHHHHHHHHHc--CCCeE
Confidence            34566665543  2  3344579999999999998777778899999999999 43 3444555666555543  5777 


Q ss_pred             EEEEe-CCCCCCcccCh----HHHHHHHHc---CCcEEE--eccCC---CCCchHHHHHHHHHHhC
Q 029854           86 VLCGN-KVDVKNRQVKA----KQVTFHRKK---NLQYYE--ISAKS---NYNFEKPFLYLARKLAG  138 (186)
Q Consensus        86 ilv~n-K~Dl~~~~~~~----~~~~~~~~~---~~~~~~--~Sa~~---~~gi~~l~~~l~~~i~~  138 (186)
                      ++++| |+|+ +.....    +..+++...   .+++++  +||++   |.|++++++.|.+.+..
T Consensus       116 ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~  180 (370)
T 2elf_A          116 IIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEK  180 (370)
T ss_dssp             EEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred             EEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence            89999 9999 432111    222333333   368999  99999   99999999999987643

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.46  E-value=1.8e-14  Score=116.45  Aligned_cols=129  Identities=15%  Similarity=0.210  Sum_probs=71.7

Q ss_pred             cccceEEEEEEEEEECCeEEEEEEEeCCCc-------cccCCccc-------cccccCcEE-----------EEEEeCCC
Q 029854            8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQ-------EKFGGLRD-------GYYIHGQCA-----------IIMFDVTA   62 (186)
Q Consensus         8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~-------~~~~~~~~-------~~~~~ad~v-----------ilv~D~~~   62 (186)
                      .||+++++....+..++..+.+.+|||+|+       +.|..++.       .|++.++++           ++||++++
T Consensus        76 ~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~  155 (361)
T 2qag_A           76 ERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISP  155 (361)
T ss_dssp             --CEEEEEEEEC----CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECS
T ss_pred             CCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEec
Confidence            478888887777777788899999999999       77777776       666655433           24455443


Q ss_pred             -hhhHHhHH-HHHHHHHhhcCCCCEEEEEeCCCCCCcc-cCh---HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029854           63 -RLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKA---KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        63 -~~s~~~i~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~---~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                       ..++..+. .|+..+   ..+.|+|+|+||+|+.... +..   ....++..++++++++||++|.| ++.|..+.+.+
T Consensus       156 ~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i  231 (361)
T 2qag_A          156 FGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLL  231 (361)
T ss_dssp             SSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHH
T ss_pred             CCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHH
Confidence             34555544 344443   3579999999999997532 221   23355666788999999999999 88888888888


Q ss_pred             hCCC
Q 029854          137 AGDP  140 (186)
Q Consensus       137 ~~~~  140 (186)
                      ....
T Consensus       232 ~~~i  235 (361)
T 2qag_A          232 KASI  235 (361)
T ss_dssp             HHTC
T ss_pred             HhcC
Confidence            6654

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.46  E-value=3.4e-14  Score=110.65  Aligned_cols=127  Identities=14%  Similarity=0.123  Sum_probs=73.9

Q ss_pred             cccceEEEEEEEEEECCeEEEEEEEeCCCcccc-------CCcc-------ccccc-------------cCcEEEEEEeC
Q 029854            8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-------GGLR-------DGYYI-------------HGQCAIIMFDV   60 (186)
Q Consensus         8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------~~~~-------~~~~~-------------~ad~vilv~D~   60 (186)
                      .||++.++....+..++..+.+.||||||....       ..+.       ..++.             .+|+++++++.
T Consensus        46 ~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~  125 (274)
T 3t5d_A           46 KKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAP  125 (274)
T ss_dssp             ---CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECS
T ss_pred             CCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecC
Confidence            789999998888877888899999999997432       1111       22222             37899999987


Q ss_pred             CChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccCh----HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029854           61 TARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        61 ~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      +...-...-..+++.+..   ..|+++|+||+|+.......    ...+.....+++++.+||+++.|+.+++.+|.+.+
T Consensus       126 ~~~~~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          126 SGHGLKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             CCSSCCHHHHHHHHHHTT---TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHhc---cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence            763211111234444443   79999999999986432211    12344456788999999999999999999998766


Q ss_pred             h
Q 029854          137 A  137 (186)
Q Consensus       137 ~  137 (186)
                      .
T Consensus       203 p  203 (274)
T 3t5d_A          203 P  203 (274)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.46  E-value=8.9e-15  Score=122.52  Aligned_cols=105  Identities=15%  Similarity=0.189  Sum_probs=75.7

Q ss_pred             EEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcc---cChHH
Q 029854           27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ---VKAKQ  103 (186)
Q Consensus        27 ~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~---~~~~~  103 (186)
                      ..+.||||||++.|..++...++.+|++|+|+|+++....+.... +..+..  .+.|+++++||+|+.+..   +....
T Consensus        51 ~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~-l~~~~~--~~vPiIVviNKiDl~~~~~~~v~~~l  127 (501)
T 1zo1_I           51 GMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEA-IQHAKA--AQVPVVVAVNKIDKPEADPDRVKNEL  127 (501)
T ss_dssp             SCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHH-HHHHHH--TTCCEEEEEECSSSSTTCCCCTTCCC
T ss_pred             EEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHH-HHHHHh--cCceEEEEEEeccccccCHHHHHHHH
Confidence            467899999999999999999999999999999988432222222 222222  478999999999997421   11110


Q ss_pred             ---HHHHHHcC--CcEEEeccCCCCCchHHHHHHHH
Q 029854          104 ---VTFHRKKN--LQYYEISAKSNYNFEKPFLYLAR  134 (186)
Q Consensus       104 ---~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~  134 (186)
                         ..++..++  ++++++||++|.|++++|+++..
T Consensus       128 ~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~  163 (501)
T 1zo1_I          128 SQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILL  163 (501)
T ss_dssp             CCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred             HHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence               01112222  68999999999999999999874

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.44  E-value=6.1e-14  Score=126.13  Aligned_cols=126  Identities=13%  Similarity=0.046  Sum_probs=87.7

Q ss_pred             ccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC-EEE
Q 029854            9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVL   87 (186)
Q Consensus         9 ~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p-~il   87 (186)
                      ++.|+++....+.+++....+.||||||+++|......+++.+|++|+|+|+++.... +...|+..+...  +.| +|+
T Consensus       341 rerGITIdva~v~f~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l--gIP~IIV  417 (1289)
T 3avx_A          341 KARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV--GVPYIIV  417 (1289)
T ss_dssp             -------CCSCEEEECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH--TCSCEEE
T ss_pred             ccCceeEEEEEEEEcCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc--CCCeEEE
Confidence            4556555443444555667899999999999988888889999999999999986433 334555555443  678 889


Q ss_pred             EEeCCCCCCcc-----cChHHHHHHHHcC-----CcEEEeccCCC--------CCchHHHHHHHHHHh
Q 029854           88 CGNKVDVKNRQ-----VKAKQVTFHRKKN-----LQYYEISAKSN--------YNFEKPFLYLARKLA  137 (186)
Q Consensus        88 v~nK~Dl~~~~-----~~~~~~~~~~~~~-----~~~~~~Sa~~~--------~gi~~l~~~l~~~i~  137 (186)
                      ++||+|+.+..     +..+...++...+     ++++++||++|        .||.++++.+...+.
T Consensus       418 VINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip  485 (1289)
T 3avx_A          418 FLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP  485 (1289)
T ss_dssp             EEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred             EEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence            99999997521     1123345566655     58999999999        468888888887664

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.43  E-value=2.2e-13  Score=105.00  Aligned_cols=132  Identities=4%  Similarity=-0.096  Sum_probs=82.0

Q ss_pred             cccc-ceEEEEEEEEEECCeEEEEEEEeCCCccccCCccc-----------cccccCcEEEEEEeCCChhhH-HhHHHHH
Q 029854            7 GKAT-IGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD-----------GYYIHGQCAIIMFDVTARLTY-KNVPTWH   73 (186)
Q Consensus         7 ~~~T-ig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~-----------~~~~~ad~vilv~D~~~~~s~-~~i~~~~   73 (186)
                      +.|+ +..+.....+..++  ..+.||||||+..+.....           .+++++|++|+|+|+++.... ..+..|+
T Consensus        52 ~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l  129 (260)
T 2xtp_A           52 LGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRV  129 (260)
T ss_dssp             TTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHH
T ss_pred             CCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHH
Confidence            3443 33344444444444  4688999999877654322           267889999999999862222 2223344


Q ss_pred             HHHHhhcCCCCEEEEEe-CCCCCCcccCh--------HHHHHHHHcCCc---E--EEeccCCCCCchHHHHHHHHHHhCC
Q 029854           74 RDLCRVCENIPIVLCGN-KVDVKNRQVKA--------KQVTFHRKKNLQ---Y--YEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        74 ~~~~~~~~~~p~ilv~n-K~Dl~~~~~~~--------~~~~~~~~~~~~---~--~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      ..+.......|.++++| |+|+.+.....        ....++...+..   +  +++||++|.|++++|..+.+.+...
T Consensus       130 ~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~  209 (260)
T 2xtp_A          130 KEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK  209 (260)
T ss_dssp             HHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhCchhhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence            33322111356666666 99997542211        122355555432   2  7899999999999999999999875


Q ss_pred             C
Q 029854          140 P  140 (186)
Q Consensus       140 ~  140 (186)
                      .
T Consensus       210 ~  210 (260)
T 2xtp_A          210 N  210 (260)
T ss_dssp             T
T ss_pred             C
Confidence            5

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.43  E-value=4.4e-14  Score=121.23  Aligned_cols=105  Identities=15%  Similarity=0.102  Sum_probs=72.4

Q ss_pred             CeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChh---hHHhHHHHHHHHHh--hcCCCCEEEEEeCCCCCCcc
Q 029854           24 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKNRQ   98 (186)
Q Consensus        24 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~---s~~~i~~~~~~~~~--~~~~~p~ilv~nK~Dl~~~~   98 (186)
                      ...+++.||||||+++|...+..+++.||++|+|+|+++..   +|.....+...+..  .....|+|||+||+|+.+..
T Consensus       242 ~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~  321 (611)
T 3izq_1          242 THRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWS  321 (611)
T ss_dssp             CSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTC
T ss_pred             cCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchh
Confidence            35568899999999999999999999999999999999742   11111222222222  12234599999999997521


Q ss_pred             -c-----ChHHHHHHHHcC-----CcEEEeccCCCCCchHH
Q 029854           99 -V-----KAKQVTFHRKKN-----LQYYEISAKSNYNFEKP  128 (186)
Q Consensus        99 -~-----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l  128 (186)
                       .     ..+...+....+     ++++++||++|.||.++
T Consensus       322 ~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          322 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence             1     112223444443     58999999999999976

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.42  E-value=1.2e-13  Score=114.91  Aligned_cols=115  Identities=16%  Similarity=0.172  Sum_probs=79.0

Q ss_pred             cccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChh---hHH---hHHHHHHHHHhhcC
Q 029854            8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYK---NVPTWHRDLCRVCE   81 (186)
Q Consensus         8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~---s~~---~i~~~~~~~~~~~~   81 (186)
                      ..|+...+.  .+  +.....+.||||||+++|...+..+++.+|++|+|+|+++..   +|+   ....++..+..  .
T Consensus        70 GiTi~~~~~--~~--~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~--~  143 (458)
T 1f60_A           70 GITIDIALW--KF--ETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--L  143 (458)
T ss_dssp             TCCCSCSCE--EE--ECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--T
T ss_pred             CcEEEEEEE--EE--ecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH--c
Confidence            345555443  22  335568999999999999988889999999999999999763   342   22222222222  3


Q ss_pred             CCC-EEEEEeCCCCCCc-c-----cChHHHHHHHHcC-----CcEEEeccCCCCCchHH
Q 029854           82 NIP-IVLCGNKVDVKNR-Q-----VKAKQVTFHRKKN-----LQYYEISAKSNYNFEKP  128 (186)
Q Consensus        82 ~~p-~ilv~nK~Dl~~~-~-----~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l  128 (186)
                      +.| +++++||+|+.+. .     +..+...++..++     ++++++||++|.|+.++
T Consensus       144 ~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          144 GVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             TCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             CCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            565 9999999999731 1     1122334555554     68999999999999754

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.42  E-value=7e-13  Score=109.75  Aligned_cols=126  Identities=16%  Similarity=0.130  Sum_probs=80.2

Q ss_pred             cccceEEEEEEEEEECCeEEEEEEEeCCCccccCCcc------------ccccccCcEEEEEEeCCChhhHHhHHHHHHH
Q 029854            8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR------------DGYYIHGQCAIIMFDVTARLTYKNVPTWHRD   75 (186)
Q Consensus         8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~------------~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~   75 (186)
                      .|++..+.....+.++|.  .+.+|||+|+.++....            ..+++.++++++|+|+++..++++. .+...
T Consensus       211 ~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~  287 (439)
T 1mky_A          211 IPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGL  287 (439)
T ss_dssp             CC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHH
T ss_pred             CCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHH
Confidence            344445555566777776  46799999985543221            2356789999999999987666542 22333


Q ss_pred             HHhhcCCCCEEEEEeCCCCCCcc-cChH-HH-HHHHH----cCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           76 LCRVCENIPIVLCGNKVDVKNRQ-VKAK-QV-TFHRK----KNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        76 ~~~~~~~~p~ilv~nK~Dl~~~~-~~~~-~~-~~~~~----~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      +..  .+.|+++|+||+|+.+.. ...+ .. .+...    .+.+++++||++|.|++++|..+.+.+..
T Consensus       288 l~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~  355 (439)
T 1mky_A          288 MER--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS  355 (439)
T ss_dssp             HHH--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHH--cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            322  478999999999997532 2222 11 22222    24689999999999999999999887754

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.42  E-value=9e-14  Score=102.00  Aligned_cols=74  Identities=18%  Similarity=0.171  Sum_probs=63.6

Q ss_pred             eEEEEEEEeCCCccccCCcccccccc----CcEEEEEEeCC-ChhhHHhHHHHHHHHHhhc-----CCCCEEEEEeCCCC
Q 029854           25 GKIRFYCWDTAGQEKFGGLRDGYYIH----GQCAIIMFDVT-ARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDV   94 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~----ad~vilv~D~~-~~~s~~~i~~~~~~~~~~~-----~~~p~ilv~nK~Dl   94 (186)
                      ..+.+.+|||||++.+...+..++..    +|++|+|||++ +..++..+..|+..+....     .+.|+++|+||+|+
T Consensus        89 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  168 (193)
T 2ged_A           89 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL  168 (193)
T ss_dssp             CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred             cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHh
Confidence            45678999999999999888888876    89999999999 8999999888888876542     47999999999999


Q ss_pred             CCcc
Q 029854           95 KNRQ   98 (186)
Q Consensus        95 ~~~~   98 (186)
                      .+..
T Consensus       169 ~~~~  172 (193)
T 2ged_A          169 FTAR  172 (193)
T ss_dssp             TTCC
T ss_pred             cCCC
Confidence            7543

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.41  E-value=9.3e-13  Score=106.53  Aligned_cols=122  Identities=16%  Similarity=0.043  Sum_probs=85.6

Q ss_pred             EEEEEEEECCeEEEEEEEeCCCccc---------cCCccccccccCcEEEEEEeCCChh--hHHhHHHHHHHHHhhc-CC
Q 029854           15 VHPLDFFTNCGKIRFYCWDTAGQEK---------FGGLRDGYYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVC-EN   82 (186)
Q Consensus        15 ~~~~~~~~~~~~~~l~l~Dt~G~~~---------~~~~~~~~~~~ad~vilv~D~~~~~--s~~~i~~~~~~~~~~~-~~   82 (186)
                      .....+.+++  ..+.+|||+|...         |...+ ..+..||++++|+|++++.  .++.+..|.+.+.... .+
T Consensus       216 ~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~  292 (364)
T 2qtf_A          216 PKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSG  292 (364)
T ss_dssp             SCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCS
T ss_pred             CEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCC
Confidence            4445666677  4578999999632         22222 2478899999999999876  5566666666655543 57


Q ss_pred             CCEEEEEeCCCCCCcccCh---HHHHHHHHc---CCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           83 IPIVLCGNKVDVKNRQVKA---KQVTFHRKK---NLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        83 ~p~ilv~nK~Dl~~~~~~~---~~~~~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      .|+++|+||+|+.+.....   ....++...   +.+++++||++|.|++++++.+.+.+...
T Consensus       293 ~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~  355 (364)
T 2qtf_A          293 KPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQL  355 (364)
T ss_dssp             CCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhccc
Confidence            8999999999997533111   111233444   24689999999999999999999877653

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.41  E-value=1.8e-13  Score=101.76  Aligned_cols=105  Identities=6%  Similarity=-0.083  Sum_probs=68.4

Q ss_pred             CCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHh----h--cCCCCEEEEEeCC-CCCCcccChHHHHH
Q 029854           34 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR----V--CENIPIVLCGNKV-DVKNRQVKAKQVTF  106 (186)
Q Consensus        34 t~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~----~--~~~~p~ilv~nK~-Dl~~~~~~~~~~~~  106 (186)
                      .+||..++.+|+.||.++|++|||+|++|..-++ .+.-+..+..    .  ..+.|++|++||. |+++.....+..+.
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~  187 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE  187 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHH
Confidence            4689999999999999999999999999875433 3333322222    1  1478999999995 78764433332211


Q ss_pred             H---H-HcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854          107 H---R-KKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus       107 ~---~-~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      .   . ...+.++.|||++|.|+.+.++||+..+..+
T Consensus       188 L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k  224 (227)
T 3l82_B          188 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  224 (227)
T ss_dssp             TTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred             cCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence            1   1 1235689999999999999999999777543

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.40  E-value=6.2e-13  Score=115.64  Aligned_cols=84  Identities=20%  Similarity=0.217  Sum_probs=62.0

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCE
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI   85 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~   85 (186)
                      ++.+|++........    ..+.+.||||||+..|...+..+++.+|++|+|+|+++..+++....|.. +..  .+.|+
T Consensus        60 ~~giTi~~~~~~~~~----~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~--~~~p~  132 (691)
T 1dar_A           60 ERGITITAAVTTCFW----KDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK--YKVPR  132 (691)
T ss_dssp             -------CCEEEEEE----TTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH--TTCCE
T ss_pred             hcccccccceEEEEE----CCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH--cCCCE
Confidence            456777665543332    35789999999999999999999999999999999999888777666654 333  37999


Q ss_pred             EEEEeCCCCCC
Q 029854           86 VLCGNKVDVKN   96 (186)
Q Consensus        86 ilv~nK~Dl~~   96 (186)
                      ++++||+|+..
T Consensus       133 ivviNKiD~~~  143 (691)
T 1dar_A          133 IAFANKMDKTG  143 (691)
T ss_dssp             EEEEECTTSTT
T ss_pred             EEEEECCCccc
Confidence            99999999864

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.36  E-value=2.3e-13  Score=113.17  Aligned_cols=124  Identities=17%  Similarity=0.131  Sum_probs=79.9

Q ss_pred             ccceEEEEEEEEEECCeEEEEEEEeCCC--------ccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc
Q 029854            9 ATIGVEVHPLDFFTNCGKIRFYCWDTAG--------QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC   80 (186)
Q Consensus         9 ~Tig~~~~~~~~~~~~~~~~l~l~Dt~G--------~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~   80 (186)
                      ++.|+........+......+++|||||        ++.+...+..++++||++|+|+|.++..+.  ...|+..+.+. 
T Consensus        53 ~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~--~d~~l~~~l~~-  129 (456)
T 4dcu_A           53 DTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTA--ADEEVAKILYR-  129 (456)
T ss_dssp             --------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCH--HHHHHHHHHTT-
T ss_pred             CCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCCh--HHHHHHHHHHH-
Confidence            4556666655566665667899999999        667777888899999999999999874432  23344433332 


Q ss_pred             CCCCEEEEEeCCCCCCcccChHHHHHHHHcCC-cEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           81 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      .+.|+++|+||+|+.+...  ...++. ..+. ..+.+||++|.|+.+++..+.+.+..
T Consensus       130 ~~~pvilV~NK~D~~~~~~--~~~e~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~  185 (456)
T 4dcu_A          130 TKKPVVLAVNKLDNTEMRA--NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFKN  185 (456)
T ss_dssp             CCSCEEEEEECC-----------CCSG-GGSSSSEEECCTTTCTTHHHHHHHHHTTGGG
T ss_pred             cCCCEEEEEECccchhhhh--hHHHHH-HcCCCceEEeecccccchHHHHHHHHhhccc
Confidence            4799999999999864321  111111 1232 57899999999999999999987754

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.36  E-value=8e-13  Score=114.52  Aligned_cols=74  Identities=16%  Similarity=0.102  Sum_probs=57.9

Q ss_pred             EEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 029854           19 DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK   95 (186)
Q Consensus        19 ~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~   95 (186)
                      ...+....+.++||||||+.+|...+..+++.+|++++|+|+++...... ..++..+..  .+.|+++++||+|+.
T Consensus        66 ~~~~~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~--~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           66 VAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER--LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             EEEEEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH--TTCCEEEEEECGGGC
T ss_pred             ceEEeeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH--ccCCEEEEecCCchh
Confidence            33333456889999999999999888999999999999999987654433 344444444  379999999999986

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.35  E-value=4.7e-12  Score=110.30  Aligned_cols=87  Identities=15%  Similarity=0.137  Sum_probs=64.2

Q ss_pred             ccccceEEEEEEEEE---ECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCC
Q 029854            7 GKATIGVEVHPLDFF---TNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI   83 (186)
Q Consensus         7 ~~~Tig~~~~~~~~~---~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~   83 (186)
                      ...|++..+....+.   .++..+.+.||||||+.+|...+..+++.+|++|+|+|+++..+.+....|. .+..  .+.
T Consensus        59 rgiTi~~~~~~~~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~--~~i  135 (704)
T 2rdo_7           59 RGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR-QANK--YKV  135 (704)
T ss_pred             cCceeeeceEEEEECCccccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHHH--cCC
Confidence            345665554433321   1334589999999999999988999999999999999999876665544443 2322  379


Q ss_pred             CEEEEEeCCCCCC
Q 029854           84 PIVLCGNKVDVKN   96 (186)
Q Consensus        84 p~ilv~nK~Dl~~   96 (186)
                      |+++++||+|+..
T Consensus       136 p~ilviNKiD~~~  148 (704)
T 2rdo_7          136 PRIAFVNKMDRMG  148 (704)
T ss_pred             CEEEEEeCCCccc
Confidence            9999999999864

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.35  E-value=1.8e-12  Score=109.55  Aligned_cols=84  Identities=15%  Similarity=0.158  Sum_probs=57.0

Q ss_pred             cceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEE
Q 029854           10 TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG   89 (186)
Q Consensus        10 Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~   89 (186)
                      +.|+.+......+....+.+.||||||+..|...+..+++.+|++|+|+|+++...... ..++..+..  .+.|+++++
T Consensus        65 ~rGiTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~~--~~ipiivvi  141 (529)
T 2h5e_A           65 QRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTRL--RDTPILTFM  141 (529)
T ss_dssp             -----CCTTEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHTT--TTCCEEEEE
T ss_pred             cCCcceeeeEEEEEECCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHHH--cCCCEEEEE
Confidence            33444333333333355789999999999999888889999999999999998643221 222222222  379999999


Q ss_pred             eCCCCCC
Q 029854           90 NKVDVKN   96 (186)
Q Consensus        90 nK~Dl~~   96 (186)
                      ||+|+..
T Consensus       142 NK~Dl~~  148 (529)
T 2h5e_A          142 NKLDRDI  148 (529)
T ss_dssp             ECTTSCC
T ss_pred             cCcCCcc
Confidence            9999964

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.33  E-value=2e-13  Score=116.75  Aligned_cols=115  Identities=18%  Similarity=0.151  Sum_probs=58.0

Q ss_pred             cccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChh---hH--H-hHHHHHHHHHhhcC
Q 029854            8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TY--K-NVPTWHRDLCRVCE   81 (186)
Q Consensus         8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~---s~--~-~i~~~~~~~~~~~~   81 (186)
                      .+++.++.....+..  ....+.||||||+++|...+..+++.||++|||+|+++..   ++  . .....+..+..  .
T Consensus       238 ~~GiTid~~~~~~~~--~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~--l  313 (592)
T 3mca_A          238 ARGVTMDVASTTFES--DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA--L  313 (592)
T ss_dssp             -----------------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH--S
T ss_pred             cCCeeEEeeEEEEEe--CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH--c
Confidence            344444444444433  4568899999999999998899999999999999998642   12  1 11122222222  2


Q ss_pred             CCC-EEEEEeCCCCCCc--ccC----hHHHHHH-HHcCC-----cEEEeccCCCCCch
Q 029854           82 NIP-IVLCGNKVDVKNR--QVK----AKQVTFH-RKKNL-----QYYEISAKSNYNFE  126 (186)
Q Consensus        82 ~~p-~ilv~nK~Dl~~~--~~~----~~~~~~~-~~~~~-----~~~~~Sa~~~~gi~  126 (186)
                      +.| +|+|+||+|+.+.  ...    .+...+. ...++     +++++||++|.||.
T Consensus       314 gip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          314 GISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             SCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             CCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            565 9999999999751  111    1122333 33344     69999999999998

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.32  E-value=2.6e-12  Score=97.83  Aligned_cols=125  Identities=7%  Similarity=-0.057  Sum_probs=81.5

Q ss_pred             ceEEEEEEEEEECCeEEEEEEEeCCCcc-----------ccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh
Q 029854           11 IGVEVHPLDFFTNCGKIRFYCWDTAGQE-----------KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV   79 (186)
Q Consensus        11 ig~~~~~~~~~~~~~~~~l~l~Dt~G~~-----------~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~   79 (186)
                      +..++....+.+++.  .+.||||||..           .+......++++++++|+|+|+++....  ...|+..+...
T Consensus        64 ~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~  139 (239)
T 3lxx_A           64 ITKKCEKRSSSWKET--ELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKM  139 (239)
T ss_dssp             -CCSCEEEEEEETTE--EEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHH
T ss_pred             eeeeEEEEEEEeCCc--eEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHH
Confidence            333444445555554  67899999943           3444455566789999999999764432  23444444332


Q ss_pred             c---CCCCEEEEEeCCCCCCcc-cC-------hHHHHHHHHcCCcEEEeccCCC-----CCchHHHHHHHHHHhCC
Q 029854           80 C---ENIPIVLCGNKVDVKNRQ-VK-------AKQVTFHRKKNLQYYEISAKSN-----YNFEKPFLYLARKLAGD  139 (186)
Q Consensus        80 ~---~~~p~ilv~nK~Dl~~~~-~~-------~~~~~~~~~~~~~~~~~Sa~~~-----~gi~~l~~~l~~~i~~~  139 (186)
                      .   ...|+++|+||+|+.... ..       .....++..++..++.+++..+     .|+.++|..+.+.+.+.
T Consensus       140 ~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~  215 (239)
T 3lxx_A          140 FGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVREN  215 (239)
T ss_dssp             HHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence            2   246999999999986432 21       2345677788888888887754     68999999998888654

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.30  E-value=2e-12  Score=100.48  Aligned_cols=105  Identities=6%  Similarity=-0.087  Sum_probs=73.4

Q ss_pred             CCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHH---HHH-hh--cCCCCEEEEEeC-CCCCCcccChHHHHH
Q 029854           34 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHR---DLC-RV--CENIPIVLCGNK-VDVKNRQVKAKQVTF  106 (186)
Q Consensus        34 t~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~---~~~-~~--~~~~p~ilv~nK-~Dl~~~~~~~~~~~~  106 (186)
                      .+||...+.+|+.|+.++|++|+|+|++|+..++ .+.-+.   .+. +.  ..+.|++|++|| .|+++.....+..+.
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~  272 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE  272 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence            4789999999999999999999999999987543 222222   222 21  258999999997 588765433332211


Q ss_pred             H---H-HcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854          107 H---R-KKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus       107 ~---~-~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      .   . .....++.|||++|+|+.+.++||++.+..+
T Consensus       273 L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k  309 (312)
T 3l2o_B          273 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  309 (312)
T ss_dssp             TTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred             cCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence            1   1 1234689999999999999999999888543

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.28  E-value=1.4e-11  Score=107.13  Aligned_cols=68  Identities=18%  Similarity=0.208  Sum_probs=57.5

Q ss_pred             EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCC
Q 029854           26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN   96 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~   96 (186)
                      .+.+.||||||+..|...+..+++.+|++|+|+|+++..+++....|.. +..  .+.|+++|+||+|+..
T Consensus        74 ~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~--~~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           74 GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT--YGVPRIVFVNKMDKLG  141 (693)
T ss_dssp             TEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH--TTCCEEEEEECTTSTT
T ss_pred             CeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH--cCCCEEEEEECCCccc
Confidence            4788999999999999889999999999999999999877776655543 333  3789999999999864

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.26  E-value=3.1e-12  Score=100.18  Aligned_cols=105  Identities=11%  Similarity=0.103  Sum_probs=73.6

Q ss_pred             EEEEEEeCCCcc-------------ccCCccccccccCcEEE-EEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCC
Q 029854           27 IRFYCWDTAGQE-------------KFGGLRDGYYIHGQCAI-IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV   92 (186)
Q Consensus        27 ~~l~l~Dt~G~~-------------~~~~~~~~~~~~ad~vi-lv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~   92 (186)
                      ..+.||||||..             .+..++..+++.++.+| +|+|+++..+......|+..+..  .+.|+++|+||+
T Consensus       125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~--~~~~~i~V~NK~  202 (299)
T 2aka_B          125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP--QGQRTIGVITKL  202 (299)
T ss_dssp             CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCT--TCSSEEEEEECG
T ss_pred             CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCC--CCCeEEEEEEcc
Confidence            689999999974             23445667888888777 69999886554443345555443  378999999999


Q ss_pred             CCCCcccChHHHHHHHH------cC-CcEEEeccCCCCCchHHHHHHHHH
Q 029854           93 DVKNRQVKAKQVTFHRK------KN-LQYYEISAKSNYNFEKPFLYLARK  135 (186)
Q Consensus        93 Dl~~~~~~~~~~~~~~~------~~-~~~~~~Sa~~~~gi~~l~~~l~~~  135 (186)
                      |+.+.....  ......      .+ .+++++||++|.|+++++..+.+.
T Consensus       203 Dl~~~~~~~--~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~  250 (299)
T 2aka_B          203 DLMDEGTDA--RDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  250 (299)
T ss_dssp             GGSCTTCCC--HHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred             ccCCCCchH--HHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence            997532211  111111      12 367899999999999999999874

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.20  E-value=1.1e-10  Score=95.88  Aligned_cols=114  Identities=17%  Similarity=0.146  Sum_probs=85.2

Q ss_pred             EEEEEEeCCCccc----cCCcccccc---ccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc---CCCCEEEEEeCCCCCC
Q 029854           27 IRFYCWDTAGQEK----FGGLRDGYY---IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKN   96 (186)
Q Consensus        27 ~~l~l~Dt~G~~~----~~~~~~~~~---~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~---~~~p~ilv~nK~Dl~~   96 (186)
                      ..+.+||++|...    +..+...++   ..++.+++|+|++ ...+.++..|.+++..+.   ...|.++++||+|+..
T Consensus       205 ~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~  283 (416)
T 1udx_A          205 ERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE  283 (416)
T ss_dssp             CEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred             ceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhh
Confidence            5678999999743    233333333   4699999999998 557777777877776653   3689999999999976


Q ss_pred             cccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCC
Q 029854           97 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN  141 (186)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  141 (186)
                      ........+.+...+.+++.+||+++.|+++++.++.+.+.+...
T Consensus       284 ~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~~~~  328 (416)
T 1udx_A          284 EEAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRSTPP  328 (416)
T ss_dssp             HHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHHHHhccc
Confidence            522222334445557899999999999999999999999987654

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.19  E-value=9.6e-12  Score=98.15  Aligned_cols=129  Identities=16%  Similarity=0.210  Sum_probs=69.0

Q ss_pred             ccceEEEEEEEEEECCeEEEEEEEeCCCc-------cccCCccc-------ccccc-------------CcEEEEEEeCC
Q 029854            9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQ-------EKFGGLRD-------GYYIH-------------GQCAIIMFDVT   61 (186)
Q Consensus         9 ~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~-------~~~~~~~~-------~~~~~-------------ad~vilv~D~~   61 (186)
                      +|++.......+..++....+++|||+|+       +.+..+..       .+++.             |++++++.+++
T Consensus        58 ~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt  137 (301)
T 2qnr_A           58 RTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF  137 (301)
T ss_dssp             -------CEEEEC---CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSS
T ss_pred             CcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCc
Confidence            45554444444444566789999999998       55555544       44443             34466666554


Q ss_pred             ChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCc-cc---ChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854           62 ARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus        62 ~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-~~---~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                      .. +++.+.  .+.+.+.....|+++|+||+|+... ..   ..+..+++..++++++++||++| |++++|..+++.+.
T Consensus       138 ~~-~Ld~~~--~~~l~~l~~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~  213 (301)
T 2qnr_A          138 GH-GLKPLD--VAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLK  213 (301)
T ss_dssp             SS-SCCHHH--HHHHHHHTTTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHH
T ss_pred             cc-CCCHHH--HHHHHHHHhcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhh
Confidence            31 333332  1333333456899999999999753 21   12345778888999999999999 99999999999997


Q ss_pred             CCCC
Q 029854          138 GDPN  141 (186)
Q Consensus       138 ~~~~  141 (186)
                      ....
T Consensus       214 ~~~p  217 (301)
T 2qnr_A          214 ASIP  217 (301)
T ss_dssp             TTCS
T ss_pred             cCCC
Confidence            6543

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.17  E-value=5.5e-11  Score=88.16  Aligned_cols=125  Identities=15%  Similarity=0.025  Sum_probs=76.3

Q ss_pred             ccccceEEEEEEEEEECCeEEEEEEEeCCCccc----------cCCcccccc---ccCcEEEEEEeCCChhhHHh--HHH
Q 029854            7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------FGGLRDGYY---IHGQCAIIMFDVTARLTYKN--VPT   71 (186)
Q Consensus         7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~----------~~~~~~~~~---~~ad~vilv~D~~~~~s~~~--i~~   71 (186)
                      +.||.|..+....+.+++   .+.+|||||...          +......++   ..++++++++|+++..++..  +..
T Consensus        55 ~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~  131 (210)
T 1pui_A           55 TSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIE  131 (210)
T ss_dssp             --------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHH
T ss_pred             ccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHH
Confidence            467778766544444443   567999999743          222222344   46899999999998665432  333


Q ss_pred             HHHHHHhhcCCCCEEEEEeCCCCCCccc----ChHHHHHHHHcC--CcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           72 WHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        72 ~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      |+.   .  .+.|+++++||+|+.....    ......++...+  +.++++||+++.|++++++.+.+.+.+.
T Consensus       132 ~~~---~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~  200 (210)
T 1pui_A          132 WAV---D--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEM  200 (210)
T ss_dssp             HHH---H--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC--
T ss_pred             HHH---H--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhc
Confidence            332   1  3689999999999864321    122334444443  4688999999999999999999877543

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.12  E-value=5.8e-11  Score=103.37  Aligned_cols=109  Identities=13%  Similarity=0.117  Sum_probs=79.0

Q ss_pred             EEEEEeCCCccc---cCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcc-cCh--
Q 029854           28 RFYCWDTAGQEK---FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKA--  101 (186)
Q Consensus        28 ~l~l~Dt~G~~~---~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~--  101 (186)
                      .+.||||||...   ....+..+++.||++|+|+|+++..+..+...|.+.+..  .+.|+++|+||+|+.... ...  
T Consensus       175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~--~~~~iiiVlNK~Dl~~~~~~~~ee  252 (695)
T 2j69_A          175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG--RGLTVFFLVNAWDQVRESLIDPDD  252 (695)
T ss_dssp             TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT--SCCCEEEEEECGGGGGGGCSSTTC
T ss_pred             CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh--hCCCEEEEEECcccccccccChhh
Confidence            589999999765   334566788999999999999988787776666555433  267899999999986432 111  


Q ss_pred             ---------HHHH-----HHHH--------cCCcEEEeccC--------------CCCCchHHHHHHHHHHhC
Q 029854          102 ---------KQVT-----FHRK--------KNLQYYEISAK--------------SNYNFEKPFLYLARKLAG  138 (186)
Q Consensus       102 ---------~~~~-----~~~~--------~~~~~~~~Sa~--------------~~~gi~~l~~~l~~~i~~  138 (186)
                               ....     +...        ...+++++||+              +|.|+.+++..+.+.+..
T Consensus       253 ~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          253 VEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence                     0111     1111        12369999999              999999999999987754

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.12  E-value=7.1e-11  Score=95.65  Aligned_cols=96  Identities=19%  Similarity=0.207  Sum_probs=75.9

Q ss_pred             CccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChH-HHH----HHHHc
Q 029854           36 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVT----FHRKK  110 (186)
Q Consensus        36 G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~-~~~----~~~~~  110 (186)
                      ..++|..+.+.+++.++++++|+|++++.     ..|...+.+...+.|+++|+||+|+.+.....+ ..+    +++..
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~  129 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQL  129 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHc
Confidence            46788889999999999999999999863     467677777667899999999999976443222 223    35566


Q ss_pred             CC---cEEEeccCCCCCchHHHHHHHHHH
Q 029854          111 NL---QYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus       111 ~~---~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      ++   +++.+||++|.|++++++.+.+..
T Consensus       130 g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          130 GLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             TCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence            76   799999999999999999997755

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.11  E-value=1e-10  Score=99.19  Aligned_cols=69  Identities=14%  Similarity=0.120  Sum_probs=55.9

Q ss_pred             eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCC
Q 029854           25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN   96 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~   96 (186)
                      +.+.+.|+||||+..|..-....++-+|++|+|+|+...-.-+...-|... .+  .++|.++++||+|...
T Consensus        98 ~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a-~~--~~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A           98 RDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVC-RM--RATPVMTFVNKMDREA  166 (548)
T ss_dssp             TTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHH-HH--TTCCEEEEEECTTSCC
T ss_pred             CCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHH-HH--hCCceEEEEecccchh
Confidence            346777889999999999999999999999999999987655554555433 33  2799999999999864

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.06  E-value=4.5e-11  Score=96.30  Aligned_cols=103  Identities=8%  Similarity=-0.024  Sum_probs=71.1

Q ss_pred             EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHH-H
Q 029854           26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-V  104 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~-~  104 (186)
                      .+.+.||||||...   .....+..+|++|+|+|++..+.++.+..+       ....|+++|+||+|+.+....... .
T Consensus       171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~-------~~~~p~ivVlNK~Dl~~~~~~~~~~~  240 (355)
T 3p32_A          171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG-------VLELADIVVVNKADGEHHKEARLAAR  240 (355)
T ss_dssp             TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT-------SGGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh-------HhhcCCEEEEECCCCcChhHHHHHHH
Confidence            46788999999432   233345889999999999876554333211       124699999999998643211111 1


Q ss_pred             HHHHH----------cCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854          105 TFHRK----------KNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus       105 ~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      .+...          ++.+++.+||++|.|++++++++.+.+..
T Consensus       241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            22221          14689999999999999999999998865

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.05  E-value=1.9e-10  Score=88.31  Aligned_cols=110  Identities=14%  Similarity=0.029  Sum_probs=69.8

Q ss_pred             EEEEEEeCCCccccCCccc------cccccCcEEEEEEeCCChhhHHhHH---HHHHHHHhhcCCCCEEEEEeCCCCCCc
Q 029854           27 IRFYCWDTAGQEKFGGLRD------GYYIHGQCAIIMFDVTARLTYKNVP---TWHRDLCRVCENIPIVLCGNKVDVKNR   97 (186)
Q Consensus        27 ~~l~l~Dt~G~~~~~~~~~------~~~~~ad~vilv~D~~~~~s~~~i~---~~~~~~~~~~~~~p~ilv~nK~Dl~~~   97 (186)
                      +.+.||||||+..+.....      ..+.. +++|+++|++...+.....   .+..... ...+.|+++|+||+|+...
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~iv~NK~D~~~~  186 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID-LRLGATTIPALNKVDLLSE  186 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH-HHHTSCEEEEECCGGGCCH
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh-cccCCCeEEEEeccccccc
Confidence            5788999999876543322      23466 8999999886433322221   1111111 1136899999999998753


Q ss_pred             ccChHHHH----------------------------HHHHcC--CcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           98 QVKAKQVT----------------------------FHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        98 ~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      ....+..+                            ++..++  .+++++||++|.|+++++.++.+.+..
T Consensus       187 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~  257 (262)
T 1yrb_A          187 EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT  257 (262)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence            21111111                            123333  479999999999999999999988754

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.04  E-value=5.5e-11  Score=97.16  Aligned_cols=59  Identities=20%  Similarity=0.256  Sum_probs=36.8

Q ss_pred             CCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHH-HHHHHHhCCC
Q 029854           82 NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL-YLARKLAGDP  140 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~-~l~~~i~~~~  140 (186)
                      .+|+++|+||+|+..........+.....+.+++.+||+.+.|+.++++ .+++.+...+
T Consensus       214 ~kP~i~v~NK~D~~~~~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~~~l~~~~p~~~  273 (397)
T 1wxq_A          214 NKPMVIAANKADAASDEQIKRLVREEEKRGYIVIPTSAAAELTLRKAAKAGFIEYIPGAS  273 (397)
T ss_dssp             HSCEEEEEECGGGSCHHHHHHHHHHHHHTTCEEEEECHHHHHHHHSCSSSCCCCSCC---
T ss_pred             CCCEEEEEeCccccchHHHHHHHHHHhhcCCcEEEEeccchhhHHHHHhhhhhhhcCCCc
Confidence            4899999999998621100111122222367899999999999988766 5555444443

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.03  E-value=2.6e-10  Score=101.11  Aligned_cols=85  Identities=20%  Similarity=0.143  Sum_probs=69.1

Q ss_pred             cccceEEEEEEEEE------------ECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHH
Q 029854            8 KATIGVEVHPLDFF------------TNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD   75 (186)
Q Consensus         8 ~~Tig~~~~~~~~~------------~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~   75 (186)
                      ..||+.......+.            +++..+.+.||||||+.+|...+..+++.+|++|+|+|+++..+++....|...
T Consensus        67 giTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~  146 (842)
T 1n0u_A           67 GITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQA  146 (842)
T ss_dssp             CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHH
T ss_pred             ceeEeeceeEEEecccccccccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHH
Confidence            34776666555554            355689999999999999999999999999999999999998888876666543


Q ss_pred             HHhhcCCCCEEEEEeCCCCC
Q 029854           76 LCRVCENIPIVLCGNKVDVK   95 (186)
Q Consensus        76 ~~~~~~~~p~ilv~nK~Dl~   95 (186)
                      ..   .+.|+++++||+|+.
T Consensus       147 ~~---~~~p~ilviNK~D~~  163 (842)
T 1n0u_A          147 LG---ERIKPVVVINKVDRA  163 (842)
T ss_dssp             HH---TTCEEEEEEECHHHH
T ss_pred             HH---cCCCeEEEEECCCcc
Confidence            32   378999999999986

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.02  E-value=7.9e-11  Score=94.96  Aligned_cols=106  Identities=12%  Similarity=0.090  Sum_probs=73.4

Q ss_pred             EEEEEEEeCCCcccc-------------CCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCEEEEEeC
Q 029854           26 KIRFYCWDTAGQEKF-------------GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNK   91 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~-------------~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~~~p~ilv~nK   91 (186)
                      ...+.||||||..++             ..+...|+++++++|+|+|.++.....  ..|+..+.... .+.|+++|+||
T Consensus       135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~~~~~~i~V~nK  212 (360)
T 3t34_A          135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPSGDRTFGVLTK  212 (360)
T ss_dssp             SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred             CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcccCCCEEEEEeC
Confidence            346899999998876             445678899999999999986544322  24444444443 36899999999


Q ss_pred             CCCCCccc-ChHHH-HHHHHcCCcEEEeccCCCCCchHHHHHHH
Q 029854           92 VDVKNRQV-KAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLA  133 (186)
Q Consensus        92 ~Dl~~~~~-~~~~~-~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  133 (186)
                      +|+.+... ..+.. .+...++.+|+.++++++.|+++.+..+.
T Consensus       213 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~  256 (360)
T 3t34_A          213 IDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIA  256 (360)
T ss_dssp             GGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred             CccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHH
Confidence            99975322 22211 22334467899999999998887665543

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.01  E-value=3e-10  Score=93.27  Aligned_cols=127  Identities=13%  Similarity=0.136  Sum_probs=60.5

Q ss_pred             cccceEEEEEEEEEECCeEEEEEEEeCCCccccCC-------------------------ccccccccCcEEEEEEeCCC
Q 029854            8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-------------------------LRDGYYIHGQCAIIMFDVTA   62 (186)
Q Consensus         8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~-------------------------~~~~~~~~ad~vilv~D~~~   62 (186)
                      .+|++.+.....+...+....+++|||+|...+..                         +.+.++.++++.+++|+...
T Consensus        69 ~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldeP  148 (418)
T 2qag_C           69 KKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAP  148 (418)
T ss_dssp             --CCEEEEEECC------CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC
T ss_pred             ccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecC
Confidence            56777665554444455567899999999865421                         23455666665444444433


Q ss_pred             h-hhHHhHH-HHHHHHHhhcCCCCEEEEEeCCCCCCc-ccC---hHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029854           63 R-LTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-QVK---AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        63 ~-~s~~~i~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~-~~~---~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      . .++..+. .|+..+.   .+.|+|+|+||+|+... .+.   .....++..++++++++|++++.++.++|..+...+
T Consensus       149 t~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i  225 (418)
T 2qag_C          149 SGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  225 (418)
T ss_dssp             -CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred             cccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence            2 2444443 5666654   37899999999998742 222   234466778899999999999999999988888765


Q ss_pred             h
Q 029854          137 A  137 (186)
Q Consensus       137 ~  137 (186)
                      .
T Consensus       226 P  226 (418)
T 2qag_C          226 P  226 (418)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.00  E-value=2.6e-10  Score=92.40  Aligned_cols=97  Identities=20%  Similarity=0.211  Sum_probs=74.4

Q ss_pred             CCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChH-HHHH----HHH
Q 029854           35 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTF----HRK  109 (186)
Q Consensus        35 ~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~-~~~~----~~~  109 (186)
                      ..++.|..+...++..++++++|+|++++.+     .|...+.+...+.|+++|+||+|+.+.....+ ..++    ++.
T Consensus        56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~  130 (369)
T 3ec1_A           56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEE  130 (369)
T ss_dssp             ---CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHH
Confidence            3588899999999999999999999999764     45555555556899999999999976543322 2233    455


Q ss_pred             cCC---cEEEeccCCCCCchHHHHHHHHHH
Q 029854          110 KNL---QYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus       110 ~~~---~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      .+.   +++.+||++|.|++++++.+.+..
T Consensus       131 ~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          131 LGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             TTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             cCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            565   689999999999999999998765

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=98.98  E-value=1.4e-09  Score=85.75  Aligned_cols=111  Identities=9%  Similarity=0.098  Sum_probs=72.7

Q ss_pred             EEEEEEeCCCccc-------------cCCccccccccCcEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCEEEEEeCC
Q 029854           27 IRFYCWDTAGQEK-------------FGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKV   92 (186)
Q Consensus        27 ~~l~l~Dt~G~~~-------------~~~~~~~~~~~ad~vilv~D~~~~~-s~~~i~~~~~~~~~~~~~~p~ilv~nK~   92 (186)
                      ..+.||||||...             +..++..+++.+|++|+|+|.++.. .......+...+..  .+.|+++|+||+
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~--~~~~~i~v~NK~  208 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP--EGKRTIGVITKL  208 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--SCSSEEEEEECT
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC--CCCcEEEEEcCc
Confidence            5789999999754             3445667889999999999985432 11121233333322  378999999999


Q ss_pred             CCCCcccChHHHHHHHH----cCCcEEEeccC---C---CCCchHHHHHHHHHHhCCCC
Q 029854           93 DVKNRQVKAKQVTFHRK----KNLQYYEISAK---S---NYNFEKPFLYLARKLAGDPN  141 (186)
Q Consensus        93 Dl~~~~~~~~~~~~~~~----~~~~~~~~Sa~---~---~~gi~~l~~~l~~~i~~~~~  141 (186)
                      |+.+....  ...++..    .+..++.+++.   +   +.|+.+++..+...+...+.
T Consensus       209 Dl~~~~~~--~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~~  265 (315)
T 1jwy_B          209 DLMDKGTD--AMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNHPI  265 (315)
T ss_dssp             TSSCSSCC--CHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCTT
T ss_pred             ccCCcchH--HHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCCCc
Confidence            99753321  1222222    12456666654   4   78899999999998877654

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.91  E-value=1.6e-09  Score=84.66  Aligned_cols=98  Identities=12%  Similarity=0.063  Sum_probs=69.6

Q ss_pred             eCCCcc-ccCCccccccccCcEEEEEEeCCChhhHHh--HHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHHHH
Q 029854           33 DTAGQE-KFGGLRDGYYIHGQCAIIMFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK  109 (186)
Q Consensus        33 Dt~G~~-~~~~~~~~~~~~ad~vilv~D~~~~~s~~~--i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~  109 (186)
                      ..||+. +........++.||+++.|+|++++.+...  +..|+       .+.|.++|.||+|+.+.........+.+.
T Consensus         5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-------~~kp~ilVlNK~DL~~~~~~~~~~~~~~~   77 (282)
T 1puj_A            5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-------KNKPRIMLLNKADKADAAVTQQWKEHFEN   77 (282)
T ss_dssp             ----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-------SSSCEEEEEECGGGSCHHHHHHHHHHHHT
T ss_pred             CCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-------CCCCEEEEEECcccCCHHHHHHHHHHHHh
Confidence            567764 344455667889999999999999887653  33332       57999999999999763221222334445


Q ss_pred             cCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854          110 KNLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus       110 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                      .+++++.+||++|.|+.+++..+.+.+.
T Consensus        78 ~g~~~i~iSA~~~~gi~~L~~~i~~~l~  105 (282)
T 1puj_A           78 QGIRSLSINSVNGQGLNQIVPASKEILQ  105 (282)
T ss_dssp             TTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             cCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence            5789999999999999999998877664

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=98.89  E-value=1.9e-09  Score=80.53  Aligned_cols=104  Identities=14%  Similarity=0.091  Sum_probs=67.4

Q ss_pred             EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcc-cC-hHH
Q 029854           26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VK-AKQ  103 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~-~~~  103 (186)
                      .+.+.+|||+|+-...   ..+...++++++|+|+++...  ....+...     .+.|+++|+||+|+.+.. .. .+.
T Consensus       108 ~~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~--~~~~~~~~-----~~~~~iiv~NK~Dl~~~~~~~~~~~  177 (221)
T 2wsm_A          108 DCDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDD--VVEKHPEI-----FRVADLIVINKVALAEAVGADVEKM  177 (221)
T ss_dssp             TCSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTT--HHHHCHHH-----HHTCSEEEEECGGGHHHHTCCHHHH
T ss_pred             CCCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcch--hhhhhhhh-----hhcCCEEEEecccCCcchhhHHHHH
Confidence            3567889999851111   011135789999999987532  11111111     147899999999986431 12 233


Q ss_pred             HHHHHHc--CCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854          104 VTFHRKK--NLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus       104 ~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      ..++...  +.+++++||++|.|++++|.++.+.+...
T Consensus       178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~  215 (221)
T 2wsm_A          178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH  215 (221)
T ss_dssp             HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred             HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence            3444443  46899999999999999999999888554

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=98.85  E-value=1.8e-09  Score=83.28  Aligned_cols=74  Identities=7%  Similarity=-0.060  Sum_probs=54.7

Q ss_pred             EEEECCeEEEEEEEeCCCccccCCccccccc---------cCcEEEEEEeCCChhhHHhH-HHHHHHHHhhcC---CCCE
Q 029854           19 DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI---------HGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE---NIPI   85 (186)
Q Consensus        19 ~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~---------~ad~vilv~D~~~~~s~~~i-~~~~~~~~~~~~---~~p~   85 (186)
                      .+..++  ..+.||||||+..+......+++         +++++++|++++... +... ..|++.+.....   ..|+
T Consensus        78 ~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~  154 (262)
T 3def_A           78 SRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKT  154 (262)
T ss_dssp             EEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGE
T ss_pred             EEEECC--eeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCE
Confidence            344444  48899999999988776666554         899999999987654 4333 467777776542   2599


Q ss_pred             EEEEeCCCCC
Q 029854           86 VLCGNKVDVK   95 (186)
Q Consensus        86 ilv~nK~Dl~   95 (186)
                      ++|+||+|+.
T Consensus       155 ivv~nK~Dl~  164 (262)
T 3def_A          155 LLVLTHAQFS  164 (262)
T ss_dssp             EEEEECTTCC
T ss_pred             EEEEeCcccC
Confidence            9999999995

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=98.84  E-value=2.6e-09  Score=82.74  Aligned_cols=75  Identities=9%  Similarity=-0.007  Sum_probs=53.1

Q ss_pred             EECCeEEEEEEEeCCCccccCCcccc---------ccccCcEEEEEEeCCChhhHHhH-HHHHHHHHhhcCC---CCEEE
Q 029854           21 FTNCGKIRFYCWDTAGQEKFGGLRDG---------YYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCEN---IPIVL   87 (186)
Q Consensus        21 ~~~~~~~~l~l~Dt~G~~~~~~~~~~---------~~~~ad~vilv~D~~~~~s~~~i-~~~~~~~~~~~~~---~p~il   87 (186)
                      .++...+.+.||||||+..+..+...         ..+++|++|+|+|++.. ++... ..|+..+...+..   .|+++
T Consensus        81 ~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iiv  159 (270)
T 1h65_A           81 SRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIV  159 (270)
T ss_dssp             EEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEE
T ss_pred             EEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEE
Confidence            33344568999999999877654332         13479999999998753 34433 4777777665432   69999


Q ss_pred             EEeCCCCCC
Q 029854           88 CGNKVDVKN   96 (186)
Q Consensus        88 v~nK~Dl~~   96 (186)
                      |+||+|+..
T Consensus       160 V~nK~Dl~~  168 (270)
T 1h65_A          160 ALTHAQFSP  168 (270)
T ss_dssp             EEECCSCCC
T ss_pred             EEECcccCC
Confidence            999999964

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=98.83  E-value=2.2e-10  Score=98.91  Aligned_cols=69  Identities=19%  Similarity=0.214  Sum_probs=53.8

Q ss_pred             eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCC
Q 029854           25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN   96 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~   96 (186)
                      +.+.+.|+||||+..|..-....++-+|++|+|+|+...-.-+...-|.. +.++  ++|.++++||+|...
T Consensus        65 ~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~-a~~~--~lp~i~~INKmDr~~  133 (638)
T 3j25_A           65 ENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHA-LRKM--GIPTIFFINKIDQNG  133 (638)
T ss_dssp             SSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHH-HHHH--TCSCEECCEECCSSS
T ss_pred             CCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHH-HHHc--CCCeEEEEecccccc
Confidence            44567888999999999988999999999999999987654443333433 3333  789999999999764

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=98.80  E-value=1.9e-08  Score=87.78  Aligned_cols=69  Identities=19%  Similarity=0.224  Sum_probs=56.5

Q ss_pred             eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCC
Q 029854           25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN   96 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~   96 (186)
                      ..+.+.|+||||+-.|..-....++-+|++|+|+|+...-..+...-|.+...+   ++|.++++||+|...
T Consensus        83 ~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~---~lp~i~~iNKiDr~~  151 (709)
T 4fn5_A           83 DNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY---GVPRIVYVNKMDRQG  151 (709)
T ss_dssp             CCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH---TCCEEEEEECSSSTT
T ss_pred             CCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc---CCCeEEEEccccccC
Confidence            368899999999999999889999999999999999986555544445444443   799999999999753

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.80  E-value=3.2e-09  Score=85.03  Aligned_cols=102  Identities=12%  Similarity=0.005  Sum_probs=65.4

Q ss_pred             EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHH-H
Q 029854           26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-V  104 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~-~  104 (186)
                      .+.+.||||||......   .....||++++|+|++....++.+..   ..    .+.|.++|+||+|+.+....... .
T Consensus       148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~----~~~p~ivv~NK~Dl~~~~~~~~~~~  217 (341)
T 2p67_A          148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL----MEVADLIVINKDDGDNHTNVAIARH  217 (341)
T ss_dssp             TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred             CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh----hcccCEEEEECCCCCChHHHHHHHH
Confidence            35788999999654322   24689999999999986544332211   11    13688999999999753211111 1


Q ss_pred             HH---HHHc-------CCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854          105 TF---HRKK-------NLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus       105 ~~---~~~~-------~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                      .+   ....       ..+++.+||++|.|++++++.+.+.+.
T Consensus       218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            11   1121       346899999999999999999998775

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=98.78  E-value=1e-09  Score=88.24  Aligned_cols=105  Identities=12%  Similarity=0.108  Sum_probs=65.5

Q ss_pred             EEEEEEEeCCCccc-------------cCCccccccccCcEEEE-EEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeC
Q 029854           26 KIRFYCWDTAGQEK-------------FGGLRDGYYIHGQCAII-MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNK   91 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~-------------~~~~~~~~~~~ad~vil-v~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK   91 (186)
                      ...+.||||||...             +..+...|++.++.+|+ |.|++....-.....+++.+..  .+.|+++|+||
T Consensus       129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~--~~~~~i~V~NK  206 (353)
T 2x2e_A          129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDP--QGQRTIGVITK  206 (353)
T ss_dssp             CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCT--TCTTEEEEEEC
T ss_pred             CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCc--CCCceEEEecc
Confidence            36799999999643             34456667766655555 5566542221222223333322  47899999999


Q ss_pred             CCCCCcccChHHHHHHHH------cC-CcEEEeccCCCCCchHHHHHHHH
Q 029854           92 VDVKNRQVKAKQVTFHRK------KN-LQYYEISAKSNYNFEKPFLYLAR  134 (186)
Q Consensus        92 ~Dl~~~~~~~~~~~~~~~------~~-~~~~~~Sa~~~~gi~~l~~~l~~  134 (186)
                      +|+.+.....  ..+...      .+ .+++.+||++|.|+++++..+.+
T Consensus       207 ~Dl~~~~~~~--~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          207 LDLMDEGTDA--RDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             GGGSCTTCCC--HHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             ccccCcchhH--HHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            9997532211  111111      12 25678999999999999999986

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=98.75  E-value=2.2e-11  Score=91.48  Aligned_cols=57  Identities=14%  Similarity=0.209  Sum_probs=43.3

Q ss_pred             CCCEEEEEeCCCCCCcc-cC-hHHHHHHHHc--CCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           82 NIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKK--NLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~~-~~-~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      ..|.++|+||+|+.+.. .. .+...++...  +.+++++||++|.|++++|..+.+.+..
T Consensus       164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          164 KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            46889999999986432 22 2334555544  5789999999999999999999987753

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.64  E-value=6.2e-08  Score=77.80  Aligned_cols=101  Identities=9%  Similarity=-0.005  Sum_probs=62.4

Q ss_pred             EEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCccc-ChHHHH
Q 029854           27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-KAKQVT  105 (186)
Q Consensus        27 ~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-~~~~~~  105 (186)
                      +.+.|+||+|...   ........+|++++|+|++.....+.+..   .+    ...|.++|+||+|+.+... ......
T Consensus       167 ~~~iliDT~Gi~~---~~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i----l~~~~ivVlNK~Dl~~~~~~~~~~~~  236 (349)
T 2www_A          167 YDIILIETVGVGQ---SEFAVADMVDMFVLLLPPAGGDELQGIKR---GI----IEMADLVAVTKSDGDLIVPARRIQAE  236 (349)
T ss_dssp             CSEEEEECCCC-----CHHHHHTTCSEEEEEECCC-------------------CCSCSEEEECCCSGGGHHHHHHHHHH
T ss_pred             CCEEEEECCCcch---hhhhHHhhCCEEEEEEcCCcchhHHHhHH---HH----HhcCCEEEEeeecCCCchhHHHHHHH
Confidence            5678999999532   12345678999999999987543322211   11    2468899999999864211 001111


Q ss_pred             HHH----------HcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854          106 FHR----------KKNLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus       106 ~~~----------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                      +..          .++.+++.+||++|.|++++++++.+.+.
T Consensus       237 l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          237 YVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             HHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            211          12357899999999999999999998774

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=98.61  E-value=3.5e-08  Score=86.29  Aligned_cols=112  Identities=11%  Similarity=0.091  Sum_probs=72.6

Q ss_pred             EEEEEEeCCCcccc-------------CCcccccc-ccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCC
Q 029854           27 IRFYCWDTAGQEKF-------------GGLRDGYY-IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV   92 (186)
Q Consensus        27 ~~l~l~Dt~G~~~~-------------~~~~~~~~-~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~   92 (186)
                      ..+.|+||||...-             ..+...|+ ..+|++++|+|++...+-.+...++..+..  .+.|+++|.||+
T Consensus       150 ~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~--~g~pvIlVlNKi  227 (772)
T 3zvr_A          150 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP--QGQRTIGVITKL  227 (772)
T ss_dssp             CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCT--TCSSEEEEEECT
T ss_pred             CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHh--cCCCEEEEEeCc
Confidence            36788999996441             12333444 578999999999875433332234444433  368999999999


Q ss_pred             CCCCcccChHHHHHHHH------cC-CcEEEeccCCCCCchHHHHHHHHH---HhCCCCc
Q 029854           93 DVKNRQVKAKQVTFHRK------KN-LQYYEISAKSNYNFEKPFLYLARK---LAGDPNL  142 (186)
Q Consensus        93 Dl~~~~~~~~~~~~~~~------~~-~~~~~~Sa~~~~gi~~l~~~l~~~---i~~~~~~  142 (186)
                      |+.+......  .+...      .+ .+++.+||++|.|++++++.+.+.   +.+.+..
T Consensus       228 Dlv~~~~~~~--~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e~~ffpe~P~y  285 (772)
T 3zvr_A          228 DLMDEGTDAR--DVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSHPSY  285 (772)
T ss_dssp             TSSCTTCCSH--HHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHHHHHHHHCTTT
T ss_pred             ccCCcchhhH--HHHHHHhhhhhccCCceEEecccccccchhHHHHHHHHHHhccCCcch
Confidence            9975432211  11111      12 256789999999999999999873   5555544

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=98.52  E-value=7e-07  Score=71.91  Aligned_cols=36  Identities=14%  Similarity=-0.018  Sum_probs=28.8

Q ss_pred             EEEEEEeCCCccccC----Ccccc---ccccCcEEEEEEeCCC
Q 029854           27 IRFYCWDTAGQEKFG----GLRDG---YYIHGQCAIIMFDVTA   62 (186)
Q Consensus        27 ~~l~l~Dt~G~~~~~----~~~~~---~~~~ad~vilv~D~~~   62 (186)
                      ..++||||||+.++.    .+...   +++.+|++++|+|+++
T Consensus        66 ~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           66 TTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             CEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             eEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence            579999999998753    34333   4789999999999986

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.48  E-value=1.5e-07  Score=74.25  Aligned_cols=91  Identities=14%  Similarity=0.108  Sum_probs=63.9

Q ss_pred             cccCCccccccccCcEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCccc----ChHHHHHHHHcCC
Q 029854           38 EKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNL  112 (186)
Q Consensus        38 ~~~~~~~~~~~~~ad~vilv~D~~~~~-s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----~~~~~~~~~~~~~  112 (186)
                      ++-..+.+..++++|.+++|+|+.++. +...+.+++.....  .++|.+||.||+||.+...    .....+.....+.
T Consensus        74 ~R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~--~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~  151 (307)
T 1t9h_A           74 ERTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA--NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGY  151 (307)
T ss_dssp             CCSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT--TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTC
T ss_pred             chhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCC
Confidence            344556667899999999999999765 44444555543332  4789999999999976532    1222344445578


Q ss_pred             cEEEeccCCCCCchHHHH
Q 029854          113 QYYEISAKSNYNFEKPFL  130 (186)
Q Consensus       113 ~~~~~Sa~~~~gi~~l~~  130 (186)
                      +++.+||.+|.|+++++.
T Consensus       152 ~v~~~sa~~~~g~~~L~~  169 (307)
T 1t9h_A          152 DVYLTSSKDQDSLADIIP  169 (307)
T ss_dssp             CEEECCHHHHTTCTTTGG
T ss_pred             eEEEEecCCCCCHHHHHh
Confidence            999999999988876654

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=98.47  E-value=4.1e-08  Score=83.36  Aligned_cols=67  Identities=18%  Similarity=0.092  Sum_probs=51.8

Q ss_pred             EEEEEeCCCccc-----------cCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCC
Q 029854           28 RFYCWDTAGQEK-----------FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN   96 (186)
Q Consensus        28 ~l~l~Dt~G~~~-----------~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~   96 (186)
                      .+.||||||...           |...+..++..+|++|+|+|+++.........|+..+.+.  +.|+++|+||+|+..
T Consensus       155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~--~~pvilVlNK~Dl~~  232 (550)
T 2qpt_A          155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH--EDKIRVVLNKADMVE  232 (550)
T ss_dssp             HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC--GGGEEEEEECGGGSC
T ss_pred             CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc--CCCEEEEEECCCccC
Confidence            688999999864           3345566788999999999998864445556676666542  579999999999975

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=98.41  E-value=2.2e-06  Score=69.22  Aligned_cols=37  Identities=16%  Similarity=0.034  Sum_probs=28.8

Q ss_pred             EEEEEEEeCCCccccC----Cccc---cccccCcEEEEEEeCCC
Q 029854           26 KIRFYCWDTAGQEKFG----GLRD---GYYIHGQCAIIMFDVTA   62 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~----~~~~---~~~~~ad~vilv~D~~~   62 (186)
                      ...++||||||+..+.    .+..   ..++.+|++++|+|+++
T Consensus        68 ~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           68 PTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             CceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            4679999999997753    2333   24789999999999986

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.41  E-value=7.7e-08  Score=74.30  Aligned_cols=90  Identities=14%  Similarity=0.069  Sum_probs=61.9

Q ss_pred             CCccc-cCCccccccccCcEEEEEEeCCChhhHHh--HHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHHHHcC
Q 029854           35 AGQEK-FGGLRDGYYIHGQCAIIMFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN  111 (186)
Q Consensus        35 ~G~~~-~~~~~~~~~~~ad~vilv~D~~~~~s~~~--i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~  111 (186)
                      ||+.. ........++.+|+++.|+|++++.+...  +. |+        ++|.++|.||+|+.+.........+.+..+
T Consensus         5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll--------~k~~iivlNK~DL~~~~~~~~~~~~~~~~g   75 (262)
T 3cnl_A            5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS--------RKETIILLNKVDIADEKTTKKWVEFFKKQG   75 (262)
T ss_dssp             ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT--------TSEEEEEEECGGGSCHHHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc--------CCCcEEEEECccCCCHHHHHHHHHHHHHcC
Confidence            55432 22345567889999999999999876543  22 21        789999999999976422222234445557


Q ss_pred             CcEEEeccCCCCCchHHHHHHHH
Q 029854          112 LQYYEISAKSNYNFEKPFLYLAR  134 (186)
Q Consensus       112 ~~~~~~Sa~~~~gi~~l~~~l~~  134 (186)
                      +++ .+||++|.|+++++..+..
T Consensus        76 ~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           76 KRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             CCE-EECCTTSCHHHHHHHHCCC
T ss_pred             CeE-EEECCCCcCHHHHHHHHHH
Confidence            888 9999999999998877654

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.15  E-value=3.5e-06  Score=67.23  Aligned_cols=102  Identities=8%  Similarity=0.019  Sum_probs=62.2

Q ss_pred             EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCC-cccChH-H
Q 029854           26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK-Q  103 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~-~  103 (186)
                      .+.+.|+||+|...-   .......+|.+++|+|++..+..+.+..++   .    ..+.+++.||+|+.. ...... .
T Consensus       147 ~~~~iliDT~Gi~~~---~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---~----~~~~ivvlNK~Dl~~~~~~s~~~~  216 (337)
T 2qm8_A          147 GFDVILVETVGVGQS---ETAVADLTDFFLVLMLPGAGDELQGIKKGI---F----ELADMIAVNKADDGDGERRASAAA  216 (337)
T ss_dssp             TCCEEEEEECSSSSC---HHHHHTTSSEEEEEECSCC------CCTTH---H----HHCSEEEEECCSTTCCHHHHHHHH
T ss_pred             CCCEEEEECCCCCcc---hhhHHhhCCEEEEEEcCCCcccHHHHHHHH---h----ccccEEEEEchhccCchhHHHHHH
Confidence            356788899996432   123457899999999987543322111111   1    235677779999753 211111 1


Q ss_pred             HHHHHH----------cCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854          104 VTFHRK----------KNLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus       104 ~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                      ..+...          +..+++.+||++|.|++++++.+.+...
T Consensus       217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            122211          1357899999999999999999988764

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.10  E-value=1.1e-05  Score=64.77  Aligned_cols=83  Identities=8%  Similarity=-0.015  Sum_probs=56.3

Q ss_pred             ccccCcEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHH---HHHcCCcEEEeccCCC
Q 029854           47 YYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTF---HRKKNLQYYEISAKSN  122 (186)
Q Consensus        47 ~~~~ad~vilv~D~~~~~-s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~---~~~~~~~~~~~Sa~~~  122 (186)
                      .+.++|.+++|... ++. +...+.+|+.....  .+.|.+||.||+||.+.........|   ....+++++.+||.+|
T Consensus       127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~--~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~  203 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET--LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQ  203 (358)
T ss_dssp             EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH--HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTT
T ss_pred             HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh--cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            46899999988665 443 44445555544433  36888999999999764321112233   3345789999999999


Q ss_pred             CCchHHHHHH
Q 029854          123 YNFEKPFLYL  132 (186)
Q Consensus       123 ~gi~~l~~~l  132 (186)
                      .|++++...+
T Consensus       204 ~gl~~L~~~~  213 (358)
T 2rcn_A          204 DGLKPLEEAL  213 (358)
T ss_dssp             BTHHHHHHHH
T ss_pred             cCHHHHHHhc
Confidence            9999887543

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=97.07  E-value=0.004  Score=50.27  Aligned_cols=72  Identities=14%  Similarity=0.048  Sum_probs=45.1

Q ss_pred             EEECCeEEEEEEEeCCCccccCC----ccc---cccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh---cCCCCEEEEE
Q 029854           20 FFTNCGKIRFYCWDTAGQEKFGG----LRD---GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCG   89 (186)
Q Consensus        20 ~~~~~~~~~l~l~Dt~G~~~~~~----~~~---~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~---~~~~p~ilv~   89 (186)
                      +.+.+  .+++|+||||...-..    +..   ..++.||++++|+|++++..  .......++...   ....|.+++.
T Consensus       114 ~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~  189 (376)
T 4a9a_A          114 IRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILI  189 (376)
T ss_dssp             EEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEE
T ss_pred             EEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhh
Confidence            34444  4677889999743221    112   34578999999999998743  222222333322   2467889999


Q ss_pred             eCCCCC
Q 029854           90 NKVDVK   95 (186)
Q Consensus        90 nK~Dl~   95 (186)
                      ||+|..
T Consensus       190 nK~d~~  195 (376)
T 4a9a_A          190 KKKEKG  195 (376)
T ss_dssp             EECSSS
T ss_pred             hHhhhh
Confidence            999974

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=97.07  E-value=0.00045  Score=57.89  Aligned_cols=102  Identities=12%  Similarity=0.077  Sum_probs=62.7

Q ss_pred             EEEEEEEeCCCccccCC-cccc---c--cccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCE-EEEEeCCCCCCcc
Q 029854           26 KIRFYCWDTAGQEKFGG-LRDG---Y--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDVKNRQ   98 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~-~~~~---~--~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~-ilv~nK~Dl~~~~   98 (186)
                      .+.+.|+||||...... +...   .  +..+|.+++|+|++......   .....+.+   ..|+ ++|.||+|...+.
T Consensus       183 ~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~---~~~i~gvVlNK~D~~~~~  256 (504)
T 2j37_W          183 NFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD---KVDVASVIVTKLDGHAKG  256 (504)
T ss_dssp             TCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH---HHCCCCEEEECTTSCCCC
T ss_pred             CCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh---hcCceEEEEeCCccccch
Confidence            35678899999764321 1111   1  22689999999998753311   22223332   2575 8899999986332


Q ss_pred             cChHHHHHHHHcCCcE------------------EEeccCCCCC-chHHHHHHHHH
Q 029854           99 VKAKQVTFHRKKNLQY------------------YEISAKSNYN-FEKPFLYLARK  135 (186)
Q Consensus        99 ~~~~~~~~~~~~~~~~------------------~~~Sa~~~~g-i~~l~~~l~~~  135 (186)
                        ..........+.|+                  +.+|+..|.| +.++++++.+.
T Consensus       257 --g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          257 --GGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             --THHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             --HHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence              12233334444443                  3468899999 99999988765

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=96.57  E-value=0.00064  Score=55.26  Aligned_cols=40  Identities=10%  Similarity=-0.203  Sum_probs=23.8

Q ss_pred             EEEEEEeCCCccccCC-------ccccccccCcEEEEEEeCCChhhH
Q 029854           27 IRFYCWDTAGQEKFGG-------LRDGYYIHGQCAIIMFDVTARLTY   66 (186)
Q Consensus        27 ~~l~l~Dt~G~~~~~~-------~~~~~~~~ad~vilv~D~~~~~s~   66 (186)
                      ..+++|||||+..+..       .+..+++++|++++|+|+++..++
T Consensus        86 ~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i  132 (396)
T 2ohf_A           86 AFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDI  132 (396)
T ss_dssp             CEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC------
T ss_pred             cccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence            3599999999877543       345667899999999999875544

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=96.08  E-value=0.045  Score=44.38  Aligned_cols=55  Identities=11%  Similarity=0.038  Sum_probs=38.1

Q ss_pred             CCCEEEEEeCCCCC---C-cccChHHHHHHHHcC--CcEEEeccCC---------------------CCCchHHHHHHHH
Q 029854           82 NIPIVLCGNKVDVK---N-RQVKAKQVTFHRKKN--LQYYEISAKS---------------------NYNFEKPFLYLAR  134 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~---~-~~~~~~~~~~~~~~~--~~~~~~Sa~~---------------------~~gi~~l~~~l~~  134 (186)
                      ..|++.++|+.|..   + ........+++...+  .+++.+||+.                     +.|++.+.....+
T Consensus       224 ~kp~~y~~Nv~e~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~sa~~E~~l~~l~~~~~~~~l~~~g~~~gl~~~i~~~~~  303 (392)
T 1ni3_A          224 AKPVIYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPKIIVTGYN  303 (392)
T ss_dssp             GSCEEEEEECCHHHHTTTCCSSHHHHHHHHHTTSTTCCEEEECHHHHHHHTTSCHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred             cCceEEEEEecchhhcccchHHHHHHHHHHHhcCCCCeEEEEEhHHHHHHhhCCHHHHHHHHHHhCCcccHHHHHHHHHH
Confidence            37999999999842   1 111223446666665  7899999986                     6788888888865


Q ss_pred             HH
Q 029854          135 KL  136 (186)
Q Consensus       135 ~i  136 (186)
                      .+
T Consensus       304 ~L  305 (392)
T 1ni3_A          304 AL  305 (392)
T ss_dssp             HT
T ss_pred             Hh
Confidence            44

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=95.46  E-value=0.029  Score=40.44  Aligned_cols=84  Identities=7%  Similarity=-0.046  Sum_probs=56.5

Q ss_pred             EEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh---cCCCCEEEEEeCCCCCCcccChHH
Q 029854           27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKNRQVKAKQ  103 (186)
Q Consensus        27 ~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~---~~~~p~ilv~nK~Dl~~~~~~~~~  103 (186)
                      +.+.|+|+|+..  .......+..||.+|+++..+...  ..+..+++.+.+.   .++.++.+|.|+++.... ...+.
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~-~~~~~  150 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT-MLNVL  150 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE-EEHHH
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch-HHHHH
Confidence            566788998765  344556677899999999887653  5566666666554   245778999999985422 33344


Q ss_pred             HHHHHHcCCcEE
Q 029854          104 VTFHRKKNLQYY  115 (186)
Q Consensus       104 ~~~~~~~~~~~~  115 (186)
                      .++.+.++.+++
T Consensus       151 ~~~l~~~~~~vl  162 (206)
T 4dzz_A          151 KESIKDTGVKAF  162 (206)
T ss_dssp             HHHHHHHTCCBC
T ss_pred             HHHHHHcCCcee
Confidence            555566666554

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=95.42  E-value=0.044  Score=45.14  Aligned_cols=93  Identities=14%  Similarity=0.063  Sum_probs=54.2

Q ss_pred             EEEEEEeCCCccccCC-----ccc-cccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccC
Q 029854           27 IRFYCWDTAGQEKFGG-----LRD-GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK  100 (186)
Q Consensus        27 ~~l~l~Dt~G~~~~~~-----~~~-~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~  100 (186)
                      +.+.|+||+|......     +.. .....++.+++|+|++.....   ......+...  -.+..+|.||.|...+.  
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a---~~~a~~f~~~--~~i~gVIlTKlD~~~~g--  255 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---YNQALAFKEA--TPIGSIIVTKLDGSAKG--  255 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHHS--CTTEEEEEECCSSCSSH--
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH---HHHHHHHHhh--CCCeEEEEECCCCcccc--
Confidence            5677889999543221     111 112357999999999864332   2222333332  23566899999975332  


Q ss_pred             hHHHHHHHHcCCcEEEeccCCCCCchHH
Q 029854          101 AKQVTFHRKKNLQYYEISAKSNYNFEKP  128 (186)
Q Consensus       101 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  128 (186)
                      ..........+.|+..++.  |++++++
T Consensus       256 G~~ls~~~~~g~PI~fig~--Ge~vddL  281 (443)
T 3dm5_A          256 GGALSAVAATGAPIKFIGT--GEKIDDI  281 (443)
T ss_dssp             HHHHHHHHTTCCCEEEEEC--SSSTTCE
T ss_pred             cHHHHHHHHHCCCEEEEEc--CCChHHh
Confidence            1233455567888887775  6655443

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=95.22  E-value=0.048  Score=42.43  Aligned_cols=93  Identities=12%  Similarity=0.060  Sum_probs=56.1

Q ss_pred             EEEEEEEeCCCccc--cC-Cccc-----cccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC-EEEEEeCCCCCC
Q 029854           26 KIRFYCWDTAGQEK--FG-GLRD-----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKN   96 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~--~~-~~~~-----~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p-~ilv~nK~Dl~~   96 (186)
                      .+.+.|+||||...  .. .+..     ..+..+|.+++|+|++..   .+.....+.+..   ..| ..+|.||+|...
T Consensus       180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~---~~~i~gvVlnk~D~~~  253 (297)
T 1j8m_F          180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ---ASKIGTIIITKMDGTA  253 (297)
T ss_dssp             TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH---TCTTEEEEEECGGGCT
T ss_pred             CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh---hCCCCEEEEeCCCCCc
Confidence            34677889999765  21 1111     123468999999998743   222222333332   456 778999999753


Q ss_pred             cccChHHHHHHHHcCCcEEEeccCCCCCchHH
Q 029854           97 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP  128 (186)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  128 (186)
                      +.  .....+....+.|+..++  .|++++++
T Consensus       254 ~~--g~~~~~~~~~~~pi~~i~--~Ge~v~dl  281 (297)
T 1j8m_F          254 KG--GGALSAVAATGATIKFIG--TGEKIDEL  281 (297)
T ss_dssp             TH--HHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred             ch--HHHHHHHHHHCcCEEEEe--CCCChhhc
Confidence            21  123456677788887776  57776553

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=95.07  E-value=0.027  Score=46.25  Aligned_cols=84  Identities=15%  Similarity=0.069  Sum_probs=48.2

Q ss_pred             EEEEEEEeCCCccccCC-----cc-ccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCC-C-EEEEEeCCCCCCc
Q 029854           26 KIRFYCWDTAGQEKFGG-----LR-DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI-P-IVLCGNKVDVKNR   97 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~-----~~-~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~-p-~ilv~nK~Dl~~~   97 (186)
                      .+.+.|+||||......     +. -..+..+|.+++|+|++....   .......+   .... | ..+|.||+|...+
T Consensus       180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~---~~~~~~i~gvVlnK~D~~~~  253 (432)
T 2v3c_C          180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAF---KEAVGEIGSIIVTKLDGSAK  253 (432)
T ss_dssp             SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHH---HTTSCSCEEEEEECSSSCST
T ss_pred             CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHH---hhcccCCeEEEEeCCCCccc
Confidence            35677889999654211     10 011236899999999976532   22222222   2345 6 8899999997532


Q ss_pred             ccChHHHHHHHHcCCcEEEe
Q 029854           98 QVKAKQVTFHRKKNLQYYEI  117 (186)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~  117 (186)
                      .  .....+....+.++..+
T Consensus       254 ~--g~~l~~~~~~~~pi~~i  271 (432)
T 2v3c_C          254 G--GGALSAVAETKAPIKFI  271 (432)
T ss_dssp             T--HHHHHHHHHSSCCEEEE
T ss_pred             h--HHHHHHHHHHCCCEEEe
Confidence            1  22334556666665554

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=94.10  E-value=0.16  Score=37.08  Aligned_cols=86  Identities=12%  Similarity=-0.007  Sum_probs=55.2

Q ss_pred             EEEEEEEeCCCc-cccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHH
Q 029854           26 KIRFYCWDTAGQ-EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV  104 (186)
Q Consensus        26 ~~~l~l~Dt~G~-~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~  104 (186)
                      .+.+.++|||+. ..  ......+..||.+|+++..+. .+...+...++.+.... +.++.+|.|+++........+..
T Consensus        67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~~-~~~~~~~~~~~~l~~~~-~~~~~vv~N~~~~~~~~~~~~~~  142 (209)
T 3cwq_A           67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPDA-LALDALMLTIETLQKLG-NNRFRILLTIIPPYPSKDGDEAR  142 (209)
T ss_dssp             GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSSH-HHHHHHHHHHHHHHHTC-SSSEEEEECSBCCTTSCHHHHHH
T ss_pred             cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCCc-hhHHHHHHHHHHHHhcc-CCCEEEEEEecCCccchHHHHHH
Confidence            356778899875 32  334556778999999998764 45666666666665532 56788999999865311223344


Q ss_pred             HHHHHcCCcEE
Q 029854          105 TFHRKKNLQYY  115 (186)
Q Consensus       105 ~~~~~~~~~~~  115 (186)
                      +..++++.+++
T Consensus       143 ~~l~~~g~~v~  153 (209)
T 3cwq_A          143 QLLTTAGLPLF  153 (209)
T ss_dssp             HHHHHTTCCBC
T ss_pred             HHHHHcCCchh
Confidence            55555666544

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=93.58  E-value=0.3  Score=36.72  Aligned_cols=65  Identities=12%  Similarity=0.103  Sum_probs=46.5

Q ss_pred             EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCC
Q 029854           26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD   93 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~D   93 (186)
                      .+.+.|+|+|+..  .......+..||.+|+++..+. .+...+...++.+.....+.++.+|.|++.
T Consensus       144 ~yD~viiD~pp~~--~~~~~~~l~~aD~vivv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~  208 (267)
T 3k9g_A          144 KYDYIVIDTNPSL--DVTLKNALLCSDYVIIPMTAEK-WAVESLDLFNFFVRKLNLFLPIFLIITRFK  208 (267)
T ss_dssp             TCSEEEEEECSSC--SHHHHHHHTTCSEEEEEEESCT-THHHHHHHHHHHHHTTTCCCCEEEEEEEEC
T ss_pred             CCCEEEEECcCCc--cHHHHHHHHHCCeEEEEeCCCh-HHHHHHHHHHHHHHHHhccCCEEEEEeccc
Confidence            3567788998754  2334455667999999999865 466666666766666555678889999993

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=92.94  E-value=0.19  Score=41.27  Aligned_cols=92  Identities=12%  Similarity=0.072  Sum_probs=54.0

Q ss_pred             EEEEEEEeCCCcccc--CC-ccc---c--ccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCc
Q 029854           26 KIRFYCWDTAGQEKF--GG-LRD---G--YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR   97 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~--~~-~~~---~--~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~   97 (186)
                      .+.+.|+||||...+  .. +..   .  .....+.+++|+|++.....   ......+...  -.+..||.||.|...+
T Consensus       179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a---~~~a~~f~~~--~~~~gVIlTKlD~~a~  253 (433)
T 3kl4_A          179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA---YDLASRFHQA--SPIGSVIITKMDGTAK  253 (433)
T ss_dssp             TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG---HHHHHHHHHH--CSSEEEEEECGGGCSC
T ss_pred             CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH---HHHHHHHhcc--cCCcEEEEeccccccc
Confidence            345668899996441  11 111   1  11246899999999865332   2233333332  2467899999997532


Q ss_pred             ccChHHHHHHHHcCCcEEEeccCCCCCch
Q 029854           98 QVKAKQVTFHRKKNLQYYEISAKSNYNFE  126 (186)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  126 (186)
                      .  ..........+.|+..++.  |++++
T Consensus       254 ~--G~als~~~~~g~Pi~fig~--Ge~v~  278 (433)
T 3kl4_A          254 G--GGALSAVVATGATIKFIGT--GEKID  278 (433)
T ss_dssp             H--HHHHHHHHHHTCEEEEEEC--CSSSS
T ss_pred             c--hHHHHHHHHHCCCEEEEEC--CCChH
Confidence            1  2234555667899888776  66653

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=92.03  E-value=1.1  Score=32.93  Aligned_cols=86  Identities=8%  Similarity=-0.087  Sum_probs=57.3

Q ss_pred             EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-CCCCEEEEEeCCCCCCcccChHHH
Q 029854           26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQV  104 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~  104 (186)
                      .+.+.|+|+|+..  .......+..||.+|+++..+ ..+...+..+++.+.+.. +...+.+|.|+.+..... ..  .
T Consensus       118 ~yD~viiD~p~~~--~~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~~-~~--~  191 (245)
T 3ea0_A          118 FYDYIIVDFGASI--DHVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNSRI-TS--D  191 (245)
T ss_dssp             HCSEEEEEEESSC--CTTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTTS-CH--H
T ss_pred             hCCEEEEeCCCCC--chHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCCCC-CH--H
Confidence            4667888998754  334556678899999999876 456777777777776543 245678999999864321 11  2


Q ss_pred             HHHHHcCCcEEEe
Q 029854          105 TFHRKKNLQYYEI  117 (186)
Q Consensus       105 ~~~~~~~~~~~~~  117 (186)
                      .+.+.++.+++..
T Consensus       192 ~~~~~~~~~v~~~  204 (245)
T 3ea0_A          192 EIEKVIGRPISKR  204 (245)
T ss_dssp             HHHHHHTSCEEEE
T ss_pred             HHHHHhCCCeEEE
Confidence            3445567776654

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=91.61  E-value=0.52  Score=35.26  Aligned_cols=67  Identities=7%  Similarity=-0.018  Sum_probs=43.1

Q ss_pred             EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHH---Hhh-cCCCCEE-EEEeCCCCC
Q 029854           26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL---CRV-CENIPIV-LCGNKVDVK   95 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~---~~~-~~~~p~i-lv~nK~Dl~   95 (186)
                      .+.+.|+|+|+....  .....+..||.+|+++..+.. ++..+..+++.+   ... ..+.+++ +|.|+.+..
T Consensus       111 ~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~  182 (257)
T 1wcv_1          111 GYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEYY-ALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR  182 (257)
T ss_dssp             TCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESSTH-HHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred             CCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCchH-HHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence            456778899875432  234456679999999998753 444444444433   332 2466765 899999854

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=90.87  E-value=0.044  Score=43.95  Aligned_cols=94  Identities=10%  Similarity=-0.038  Sum_probs=53.3

Q ss_pred             EEEEeCCCccccCCcc----c----ccc--ccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcc
Q 029854           29 FYCWDTAGQEKFGGLR----D----GYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ   98 (186)
Q Consensus        29 l~l~Dt~G~~~~~~~~----~----~~~--~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~   98 (186)
                      +.++||||......+.    .    .++  +..+.++++++.....-+..+.. +..+.  ..+.|++++.||+|.....
T Consensus       214 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-l~~l~--~~~~~~~~v~~k~d~~~~~  290 (369)
T 3ec1_A          214 ATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR-LDYIK--GGRRSFVCYMANELTVHRT  290 (369)
T ss_dssp             CEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEE--SSSEEEEEEECTTSCEEEE
T ss_pred             eEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE-EEEcc--CCCceEEEEecCCcccccc
Confidence            6788999965433211    1    111  56899999999843211111100 00111  1367999999999987654


Q ss_pred             cChHHH-HHHHHcCCcEEEeccCCCCCc
Q 029854           99 VKAKQV-TFHRKKNLQYYEISAKSNYNF  125 (186)
Q Consensus        99 ~~~~~~-~~~~~~~~~~~~~Sa~~~~gi  125 (186)
                      ...... .+.+..+..+...++....++
T Consensus       291 ~~~~~~~~~~~~~g~~l~p~~~~~~~~~  318 (369)
T 3ec1_A          291 KLEKADSLYANQLGELLSPPSKRYAAEF  318 (369)
T ss_dssp             EGGGHHHHHHHHBTTTBCSSCGGGTTTC
T ss_pred             cHHHHHHHHHHhcCCccCCCCchhhhhc
Confidence            444443 455566766666666554444

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=90.43  E-value=0.029  Score=45.00  Aligned_cols=89  Identities=7%  Similarity=-0.035  Sum_probs=48.5

Q ss_pred             EEEEeCCCccccCCcc----ccc------cccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcc
Q 029854           29 FYCWDTAGQEKFGGLR----DGY------YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ   98 (186)
Q Consensus        29 l~l~Dt~G~~~~~~~~----~~~------~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~   98 (186)
                      +.++||||......+.    ...      .+..+.++++++.....-+..+.. +..+.  ....|+++++||+|..+..
T Consensus       213 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-~d~l~--~~~~~~~~v~nk~d~~~~~  289 (368)
T 3h2y_A          213 SSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR-FDYVS--GGRRAFTCHFSNRLTIHRT  289 (368)
T ss_dssp             CEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEE--SSSEEEEEEECTTSCEEEE
T ss_pred             eEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEE-EEEec--CCCceEEEEecCccccccc
Confidence            6788999975433221    111      356788899998743211111100 00011  1367999999999987654


Q ss_pred             cChHHH-HHHHHcCCcEEEeccC
Q 029854           99 VKAKQV-TFHRKKNLQYYEISAK  120 (186)
Q Consensus        99 ~~~~~~-~~~~~~~~~~~~~Sa~  120 (186)
                      ...... .+.+..+..++..++.
T Consensus       290 ~~~~~~~~~~~~~g~~l~p~~~~  312 (368)
T 3h2y_A          290 KLEKADELYKNHAGDLLSPPTPE  312 (368)
T ss_dssp             EHHHHHHHHHHHBTTTBCSSCHH
T ss_pred             cHHHHHHHHHHHhCCccCCCchh
Confidence            444443 3445556555444443

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=89.38  E-value=1.2  Score=32.41  Aligned_cols=84  Identities=10%  Similarity=-0.005  Sum_probs=52.4

Q ss_pred             EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHH
Q 029854           26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT  105 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~  105 (186)
                      .+.+.++|+|+...  ......+..+|.+|++...+. .+...+...++.+.+. ....+.+|.|+.+.....  .....
T Consensus       111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~-~~~~~~~~~~~~l~~~-~~~~~~vv~N~~~~~~~~--~~~~~  184 (237)
T 1g3q_A          111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEI-SCLTDTMKVGIVLKKA-GLAILGFVLNRYGRSDRD--IPPEA  184 (237)
T ss_dssp             GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCH-HHHHHHHHHHHHHHHT-TCEEEEEEEEEETSCTTC--CCHHH
T ss_pred             cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCc-ccHHHHHHHHHHHHhC-CCceEEEEEecCCcccch--hHHHH
Confidence            35677889987533  334456778999999998764 4666666666666554 223456889999864332  22233


Q ss_pred             HHHHcCCcEE
Q 029854          106 FHRKKNLQYY  115 (186)
Q Consensus       106 ~~~~~~~~~~  115 (186)
                      +.+..+.+++
T Consensus       185 ~~~~~~~~~~  194 (237)
T 1g3q_A          185 AEDVMEVPLL  194 (237)
T ss_dssp             HHHHHCSCEE
T ss_pred             HHHHhCccce
Confidence            4455566654

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=89.18  E-value=1.2  Score=33.12  Aligned_cols=84  Identities=5%  Similarity=-0.091  Sum_probs=52.0

Q ss_pred             EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHH
Q 029854           26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT  105 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~  105 (186)
                      .+.+.|+|+|+...  ......+..+|.+|+++..+. .+...+..+++.+.+. ...++-+|.|+.+.....  .....
T Consensus       110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~-~~~~~~~~~~~~l~~~-~~~~~~vv~N~~~~~~~~--~~~~~  183 (263)
T 1hyq_A          110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEI-SSITDGLKTKIVAERL-GTKVLGVVVNRITTLGIE--MAKNE  183 (263)
T ss_dssp             TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSH-HHHHHHHHHHHHHHHH-TCEEEEEEEEEECTTTHH--HHHHH
T ss_pred             hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCCh-hHHHHHHHHHHHHHhc-CCCeeEEEEccCCccccc--chHHH
Confidence            35677889987433  334456678999999988764 4566666666666554 223455899999864322  22234


Q ss_pred             HHHHcCCcEE
Q 029854          106 FHRKKNLQYY  115 (186)
Q Consensus       106 ~~~~~~~~~~  115 (186)
                      +.+..+.+++
T Consensus       184 ~~~~~~~~~~  193 (263)
T 1hyq_A          184 IEAILEAKVI  193 (263)
T ss_dssp             HHHHTTSCEE
T ss_pred             HHHHhCCCeE
Confidence            4455666544

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=88.80  E-value=1.2  Score=36.14  Aligned_cols=108  Identities=16%  Similarity=0.140  Sum_probs=61.3

Q ss_pred             EEEEEeCCCccccCCcccc-----ccccCcEEEEEEeCC--ChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCC--C--
Q 029854           28 RFYCWDTAGQEKFGGLRDG-----YYIHGQCAIIMFDVT--ARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK--N--   96 (186)
Q Consensus        28 ~l~l~Dt~G~~~~~~~~~~-----~~~~ad~vilv~D~~--~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~--~--   96 (186)
                      .+.+||++|..........     -+.+.+.+++ ++..  .+...    .....+.+  .+.|+++|.||.|+.  +  
T Consensus       121 ~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv----~la~aL~~--~~~p~~lV~tkpdlllLDEP  193 (413)
T 1tq4_A          121 NVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATRFKKNDI----DIAKAISM--MKKEFYFVRTKVDSDITNEA  193 (413)
T ss_dssp             TEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSCCCHHHH----HHHHHHHH--TTCEEEEEECCHHHHHHHHH
T ss_pred             CeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCCccHHHH----HHHHHHHh--cCCCeEEEEecCcccccCcc
Confidence            5788999985321111111     2334455555 7776  32111    12222322  268999999999974  1  


Q ss_pred             ----cccChH-H----HHHH----HHcC---CcEEEecc--CCCCCchHHHHHHHHHHhCCCCc
Q 029854           97 ----RQVKAK-Q----VTFH----RKKN---LQYYEISA--KSNYNFEKPFLYLARKLAGDPNL  142 (186)
Q Consensus        97 ----~~~~~~-~----~~~~----~~~~---~~~~~~Sa--~~~~gi~~l~~~l~~~i~~~~~~  142 (186)
                          +..... .    .+++    .+.+   ..++.+|+  ..+.|++++.+.+.+.+.+.+..
T Consensus       194 tsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~  257 (413)
T 1tq4_A          194 DGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRH  257 (413)
T ss_dssp             TTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHH
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchhh
Confidence                111111 1    2232    1222   35788999  77778999999999988665543

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=87.97  E-value=0.55  Score=34.86  Aligned_cols=87  Identities=10%  Similarity=-0.048  Sum_probs=53.5

Q ss_pred             EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-------CCCCEEEEEeCCCCCCcc
Q 029854           26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-------ENIPIVLCGNKVDVKNRQ   98 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-------~~~p~ilv~nK~Dl~~~~   98 (186)
                      .+.+.|+|+|+...  ......+..||.+|+++..+. .+...+..+++.+....       ....+.+|.|+.+.....
T Consensus       113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~  189 (260)
T 3q9l_A          113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEV-SSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVS  189 (260)
T ss_dssp             TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSH-HHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHH
T ss_pred             CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCCh-hHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCccccc
Confidence            46678889987433  345566778999999998764 46666666666655432       125678999999843211


Q ss_pred             c--ChHHHHHHHHcCCcEE
Q 029854           99 V--KAKQVTFHRKKNLQYY  115 (186)
Q Consensus        99 ~--~~~~~~~~~~~~~~~~  115 (186)
                      .  ......+...++.+++
T Consensus       190 ~~~~~~~~~~~~~~~~~~~  208 (260)
T 3q9l_A          190 RGDMLSMEDVLEILRIKLV  208 (260)
T ss_dssp             TTSSCCHHHHHHHHCSEEE
T ss_pred             cccccCHHHHHHHhCCceE
Confidence            0  1111344455676655

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=87.96  E-value=1.6  Score=31.97  Aligned_cols=65  Identities=14%  Similarity=-0.018  Sum_probs=44.7

Q ss_pred             eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCC
Q 029854           25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD   93 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~D   93 (186)
                      ..+.+.|+|||+...  ......+..||.+|+++..+. .++..+..+.+.+... .-..+.+|.|+.+
T Consensus       130 ~~yD~viiD~pp~~~--~~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~~~~~-~~~~~~~v~N~~~  194 (254)
T 3kjh_A          130 DKKEAVVMDMGAGIE--HLTRGTAKAVDMMIAVIEPNL-NSIKTGLNIEKLAGDL-GIKKVRYVINKVR  194 (254)
T ss_dssp             TCCSEEEEEECTTCT--TCCHHHHTTCSEEEEEECSSH-HHHHHHHHHHHHHHHH-TCSCEEEEEEEEC
T ss_pred             CCCCEEEEeCCCccc--HHHHHHHHHCCEEEEecCCCH-HHHHHHHHHHHHHHHc-CCccEEEEEeCCC
Confidence            346778889987543  255566788999999998864 4666666555544433 2245789999998

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=87.77  E-value=2.6  Score=34.37  Aligned_cols=63  Identities=13%  Similarity=0.129  Sum_probs=32.3

Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHH----HHHcCCcEEEecc
Q 029854           53 CAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTF----HRKKNLQYYEISA  119 (186)
Q Consensus        53 ~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~----~~~~~~~~~~~Sa  119 (186)
                      +++|+.|++...+-.+    ++-+.....+.|+|+|.||+|.............    ....+++++.+|.
T Consensus       151 ~v~fI~d~~~~l~~~D----ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~  217 (427)
T 2qag_B          151 CLYFIAPTGHSLKSLD----LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT  217 (427)
T ss_dssp             EEEEECCCC---CHHH----HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred             EEEEEeCCCCCCCHHH----HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence            4666677665433222    1222223357899999999998643222222111    2234667776664

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=87.65  E-value=0.84  Score=34.23  Aligned_cols=89  Identities=13%  Similarity=0.086  Sum_probs=52.6

Q ss_pred             eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEE-EEEeCCCCC-----Cc-
Q 029854           25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVK-----NR-   97 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~i-lv~nK~Dl~-----~~-   97 (186)
                      ..+.+.|+|||+......+....+..+|.+|++...+. .+...+...++.+.+.  +.+++ +|.|+.+..     .+ 
T Consensus       127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~--~~~~~gvV~N~~~~~~~~~~~~~  203 (262)
T 2ph1_A          127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQE-LTAVIVEKAINMAEET--NTSVLGLVENMSYFVCPNCGHKS  203 (262)
T ss_dssp             CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSS-CCHHHHHHHHHHHHTT--TCCEEEEEETTCCEECTTTCCEE
T ss_pred             cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCcc-chHHHHHHHHHHHHhC--CCCEEEEEECCCccCCccccccc
Confidence            34667888998754321111112236899999998774 3555566666665543  56776 899998742     11 


Q ss_pred             cc--ChHHHHHHHHcCCcEEE
Q 029854           98 QV--KAKQVTFHRKKNLQYYE  116 (186)
Q Consensus        98 ~~--~~~~~~~~~~~~~~~~~  116 (186)
                      ..  ......+.+.++.+++.
T Consensus       204 ~~~~~~~~~~~~~~~g~~~~~  224 (262)
T 2ph1_A          204 YIFGEGKGESLAKKYNIGFFT  224 (262)
T ss_dssp             CTTCCCCHHHHHHHTTCSEEE
T ss_pred             ccccccHHHHHHHHcCCCeEE
Confidence            11  11234566677877664

>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A

Probab=85.62  E-value=1.1  Score=34.04  Aligned_cols=68  Identities=10%  Similarity=0.106  Sum_probs=43.4

Q ss_pred             EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhH---HHH-------------H---HHHHhh--cCC-C
Q 029854           26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV---PTW-------------H---RDLCRV--CEN-I   83 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i---~~~-------------~---~~~~~~--~~~-~   83 (186)
                      .+.+.|+|+|+..  .......+..||.+|+++..+.. +...+   ..+             +   +.+...  .+. .
T Consensus       103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  179 (286)
T 2xj4_A          103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSFV-DFDMLGTVDPVTLELTKPSLYSLTVWEGRKQRALSGQRQAM  179 (286)
T ss_dssp             HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSHH-HHTTTEEECTTTCCEEEECHHHHHHHHHHHHHHHHCSSCCC
T ss_pred             cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCcc-HHHHHHHHHHHhhhccccchhhhhhhcchhhhhhccCCccc
Confidence            3567788998764  34455677889999999988642 32221   112             3   333333  345 6


Q ss_pred             CEEEEEeCCCCCC
Q 029854           84 PIVLCGNKVDVKN   96 (186)
Q Consensus        84 p~ilv~nK~Dl~~   96 (186)
                      ++.+|.|+++...
T Consensus       180 ~~~vV~N~~~~~~  192 (286)
T 2xj4_A          180 DWVVLRNRLATTE  192 (286)
T ss_dssp             EEEEEEECCTTCC
T ss_pred             cEEEEEeeecCCC
Confidence            7889999998643

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=83.41  E-value=1.1  Score=34.19  Aligned_cols=83  Identities=10%  Similarity=0.167  Sum_probs=47.6

Q ss_pred             EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHh----hcCCCCEE-EEEeCCCCCCcccC
Q 029854           26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR----VCENIPIV-LCGNKVDVKNRQVK  100 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~----~~~~~p~i-lv~nK~Dl~~~~~~  100 (186)
                      .+.+.|+|||+....  .....+..||.+|+++..+. .+...+..+++.+.+    ...+.+++ +|.|+.|.......
T Consensus       154 ~yD~IiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~~~~~  230 (298)
T 2oze_A          154 DYDLIIIDTVPTPSV--YTNNAIVASDYVMIPLQAEE-ESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSATIK  230 (298)
T ss_dssp             GCSEEEEEECSSCSH--HHHHHHHHCSEEEEEECGGG-CCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTCHHHH
T ss_pred             CCCEEEEECCCCccH--HHHHHHHHCCeEEEEecCcH-HHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCcHHHH
Confidence            366778899875432  22334556999999998764 344444444444333    22466744 88999986432221


Q ss_pred             hHHHHHHHHcC
Q 029854          101 AKQVTFHRKKN  111 (186)
Q Consensus       101 ~~~~~~~~~~~  111 (186)
                      ....++...++
T Consensus       231 ~~~~~~~~~~~  241 (298)
T 2oze_A          231 SNLEELYKQHK  241 (298)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHhc
Confidence            22234445554

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=82.48  E-value=2.6  Score=32.94  Aligned_cols=92  Identities=13%  Similarity=0.078  Sum_probs=51.0

Q ss_pred             EEEEEEEeCCCccccCC-ccc-----------cccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCE-EEEEeCC
Q 029854           26 KIRFYCWDTAGQEKFGG-LRD-----------GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKV   92 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~-~~~-----------~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~-ilv~nK~   92 (186)
                      .+.+.|+||||...... +..           ..-..++.+++|+|++..  .+.+.    .+.......++ -+|.||.
T Consensus       191 ~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~----~~~~~~~~~~i~GvVltk~  264 (320)
T 1zu4_A          191 NYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVI----QAEEFSKVADVSGIILTKM  264 (320)
T ss_dssp             TCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHH----HHHHHTTTSCCCEEEEECG
T ss_pred             CCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHH----HHHHHhhcCCCcEEEEeCC
Confidence            45677889999654321 100           011247899999998842  22222    22233233333 4788999


Q ss_pred             CCCCcccChHHHHHHHHcCCcEEEeccCCCCCchH
Q 029854           93 DVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK  127 (186)
Q Consensus        93 Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  127 (186)
                      |...+  ......+....+.|+..++  .|+++++
T Consensus       265 d~~~~--~g~~~~~~~~~~~Pi~~i~--~Ge~~~d  295 (320)
T 1zu4_A          265 DSTSK--GGIGLAIKELLNIPIKMIG--VGEKVDD  295 (320)
T ss_dssp             GGCSC--TTHHHHHHHHHCCCEEEEE--CSSSTTC
T ss_pred             CCCCc--hhHHHHHHHHHCcCEEEEe--CCCCccc
Confidence            96432  1244566677788876654  3444443

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=81.70  E-value=4.9  Score=31.47  Aligned_cols=91  Identities=12%  Similarity=0.019  Sum_probs=52.5

Q ss_pred             EEEEeCCCccccCCccccc------cccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChH
Q 029854           29 FYCWDTAGQEKFGGLRDGY------YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK  102 (186)
Q Consensus        29 l~l~Dt~G~~~~~~~~~~~------~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~  102 (186)
                      +.+.||+|........-..      .-..|-.+++.|++...   ++...+..+.+.  .-.-+++.||.|...+  ...
T Consensus       214 ~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~--~~it~iilTKlD~~a~--~G~  286 (328)
T 3e70_C          214 VVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEA--VKIDGIILTKLDADAR--GGA  286 (328)
T ss_dssp             EEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHH--SCCCEEEEECGGGCSC--CHH
T ss_pred             hhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHh--cCCCEEEEeCcCCccc--hhH
Confidence            4467999975432211111      11368889999986543   233333333332  1234677899996322  233


Q ss_pred             HHHHHHHcCCcEEEeccCCCCCchHH
Q 029854          103 QVTFHRKKNLQYYEISAKSNYNFEKP  128 (186)
Q Consensus       103 ~~~~~~~~~~~~~~~Sa~~~~gi~~l  128 (186)
                      ....+...+.|+..++  +|++++++
T Consensus       287 ~l~~~~~~~~pi~~i~--~Ge~v~dl  310 (328)
T 3e70_C          287 ALSISYVIDAPILFVG--VGQGYDDL  310 (328)
T ss_dssp             HHHHHHHHTCCEEEEE--CSSSTTCE
T ss_pred             HHHHHHHHCCCEEEEe--CCCCcccc
Confidence            4566677788988877  67766543

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=81.26  E-value=9.8  Score=28.13  Aligned_cols=86  Identities=13%  Similarity=0.129  Sum_probs=50.3

Q ss_pred             EEEEEEEeCCCccccCCccc-cccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCCCE-EEEEeCCCCCCcccCh
Q 029854           26 KIRFYCWDTAGQEKFGGLRD-GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPI-VLCGNKVDVKNRQVKA  101 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~~~~-~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~p~-ilv~nK~Dl~~~~~~~  101 (186)
                      .+.+.|+||+|......+.. .....||.+|++...+. .+...+...++.+....  .+.++ -+|.|+.+...   ..
T Consensus       115 ~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~---~~  190 (269)
T 1cp2_A          115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEM-MALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN---EY  190 (269)
T ss_dssp             TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSH-HHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC---CH
T ss_pred             CCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCch-hhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcch---hH
Confidence            36678889987543222211 11246999999998764 46666666666665543  24554 58899986321   12


Q ss_pred             H-HHHHHHHcCCcEE
Q 029854          102 K-QVTFHRKKNLQYY  115 (186)
Q Consensus       102 ~-~~~~~~~~~~~~~  115 (186)
                      . ...+.+.++.+++
T Consensus       191 ~~~~~l~~~~~~~v~  205 (269)
T 1cp2_A          191 ELLDAFAKELGSQLI  205 (269)
T ss_dssp             HHHHHHHHHHTCCEE
T ss_pred             HHHHHHHHHcCCccc
Confidence            2 2345556676655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	186
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	8e-24
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	4e-23
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	4e-22
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	7e-22
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	1e-21
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	1e-21
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	4e-20
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	4e-20
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	4e-20
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	9e-20
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	4e-19
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	6e-19
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	6e-19
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	2e-18
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	3e-18
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	1e-17
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	1e-17
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	2e-16
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	7e-16
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	1e-15
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	1e-14
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	3e-14
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	4e-14
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	5e-14
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	2e-13
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	1e-12
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	2e-12
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-12
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	3e-12
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	4e-12
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	1e-11
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	2e-11
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	2e-11
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	2e-11
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	3e-11
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	9e-11
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	7e-10
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	1e-09
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-09
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	2e-09
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	4e-09
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	1e-08
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	1e-08
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	5e-08
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	8e-08
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	8e-08
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-07
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	5e-07
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	9e-07
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	2e-06
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	4e-06

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 90.2 bits (223), Expect = 8e-24
 Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 2/131 (1%)

Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
             TIG++        N  K++   WDTAGQE+F  +   YY      I+++D+T   T+ 
Sbjct: 32  ITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFT 91

Query: 68  NVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK-NLQYYEISAKSNYNF 125
           N+   +        +   ++L GNK D++ R V A Q     K+  + + E SAK++ N 
Sbjct: 92  NIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNV 151

Query: 126 EKPFLYLARKL 136
            + F  LA+ +
Sbjct: 152 NEIFFTLAKLI 162

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.4 bits (218), Expect = 4e-23
 Identities = 46/135 (34%), Positives = 70/135 (51%), Gaps = 3/135 (2%)

Query: 11  IGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP 70
           IGV+        +  K +   WDTAGQE+F  L   YY   Q  I+++DVT R T+  + 
Sbjct: 40  IGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLD 99

Query: 71  TWHRDLCRVCE--NIPIVLCGNKVDVKNRQV-KAKQVTFHRKKNLQYYEISAKSNYNFEK 127
            W  +L   C   +I  +L GNK+D +NR+V + + + F RK ++ + E SAK+    + 
Sbjct: 100 NWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQC 159

Query: 128 PFLYLARKLAGDPNL 142
            F  L  K+   P L
Sbjct: 160 AFEELVEKIIQTPGL 174

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 86.5 bits (213), Expect = 4e-22
 Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 3/132 (2%)

Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
            +TIGV+        +   ++   WDTAGQE+F  +   YY      II++DVT + ++ 
Sbjct: 36  ISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFN 95

Query: 68  NVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKK--NLQYYEISAKSNYN 124
            V  W +++ R     +  +L GNK D+K+++V    V         + + E SA  + N
Sbjct: 96  GVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTN 155

Query: 125 FEKPFLYLARKL 136
            E  FL +AR++
Sbjct: 156 VEDAFLTMARQI 167

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.2 bits (210), Expect = 7e-22
 Identities = 36/130 (27%), Positives = 67/130 (51%), Gaps = 3/130 (2%)

Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIG++        +  +I+   WDTAGQE+F  +   YY      ++++D+T   ++ N+
Sbjct: 38  TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 97

Query: 70  PTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFE 126
             W R++      ++  ++ GNK DV +++  +K+          +++ E SAK+N N E
Sbjct: 98  RNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVE 157

Query: 127 KPFLYLARKL 136
             F  LAR +
Sbjct: 158 NAFFTLARDI 167

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.9 bits (209), Expect = 1e-21
 Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 3/132 (2%)

Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
            ATIGV+        N  K++   WDTAGQE+F  +   YY      I+ +D+T   +++
Sbjct: 35  GATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFR 94

Query: 68  NVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYN 124
            +P             +  VL GNK+D+  R+  ++Q    F   +++ Y E SAK + N
Sbjct: 95  CLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDN 154

Query: 125 FEKPFLYLARKL 136
            EK FL LA +L
Sbjct: 155 VEKLFLDLACRL 166

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.3 bits (207), Expect = 1e-21
 Identities = 113/138 (81%), Positives = 123/138 (89%)

Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
            AT+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYK
Sbjct: 33  VATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYK 92

Query: 68  NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 127
           NVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEK
Sbjct: 93  NVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEK 152

Query: 128 PFLYLARKLAGDPNLHFV 145
           PFL+LARKL GDPNL FV
Sbjct: 153 PFLWLARKLIGDPNLEFV 170

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.7 bits (198), Expect = 4e-20
 Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 3/129 (2%)

Query: 11  IGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP 70
           IGVE        +   I+   WDTAGQE++  +   YY     A++++D+   LTY+NV 
Sbjct: 37  IGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVE 96

Query: 71  TWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEK 127
            W ++L      NI I+L GNK D+++ +         F  K NL + E SA  + N E+
Sbjct: 97  RWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEE 156

Query: 128 PFLYLARKL 136
            F  +  ++
Sbjct: 157 AFKNILTEI 165

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.7 bits (198), Expect = 4e-20
 Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 3/124 (2%)

Query: 16  HPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD 75
                      ++   WDTAGQE+F  +   YY     A++++D+T+R TY  +  W  D
Sbjct: 43  GSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTD 102

Query: 76  LCR-VCENIPIVLCGN--KVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 132
                 +NI I+LCGN   +D        +   F ++  L + E SA +  N E+ F+  
Sbjct: 103 ARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQC 162

Query: 133 ARKL 136
           ARK+
Sbjct: 163 ARKI 166

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.4 bits (197), Expect = 4e-20
 Identities = 38/134 (28%), Positives = 69/134 (51%), Gaps = 3/134 (2%)

Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
           +ATIG++      +     IR   WDTAGQE+F  L   Y      A++++D+T   +++
Sbjct: 30  QATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQ 89

Query: 68  NVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKAKQV--TFHRKKNLQYYEISAKSNYN 124
               W  D+      ++ I+L GNK D+ +++  + +      ++ N+ + E SAK+ YN
Sbjct: 90  QTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN 149

Query: 125 FEKPFLYLARKLAG 138
            ++ F  +A  L G
Sbjct: 150 VKQLFRRVAAALPG 163

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.5 bits (195), Expect = 9e-20
 Identities = 33/137 (24%), Positives = 67/137 (48%), Gaps = 3/137 (2%)

Query: 3   VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 62
           ++    +T+G++        +  K++   WDTAGQE+F  +   YY      ++++DVT 
Sbjct: 32  LAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTN 91

Query: 63  RLTYKNVPTWHRDLCRVC-ENIPIVLCGN-KVDVKNRQVKAKQV-TFHRKKNLQYYEISA 119
           + ++ N+  W  ++      ++ ++L GN       R VK +      ++  L + E SA
Sbjct: 92  KASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSA 151

Query: 120 KSNYNFEKPFLYLARKL 136
           K+  N +  F  +A++L
Sbjct: 152 KTGLNVDLAFTAIAKEL 168

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 78.0 bits (191), Expect = 4e-19
 Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 3/128 (2%)

Query: 12  GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT 71
           G++      + N  +I+   WDTAGQE++  +   YY      I+M+D+T   ++  V  
Sbjct: 39  GIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD 98

Query: 72  WHRDLCRVCEN---IPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128
           W   +     +   + +V     ++ +      +          +++E SAK N N ++ 
Sbjct: 99  WSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQT 158

Query: 129 FLYLARKL 136
           F  L   +
Sbjct: 159 FERLVDVI 166

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.2 bits (189), Expect = 6e-19
 Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 3/128 (2%)

Query: 12  GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT 71
           GVE        +  KI+   WDTAGQE+F  +   YY     A++++D+T R TY ++ +
Sbjct: 38  GVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSS 97

Query: 72  WHRDLCRVCENI-PIVLCGNKVDVKNRQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKP 128
           W  D   +      I+L GNK D++ ++    +    F  +  L + E SAK+  N E  
Sbjct: 98  WLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDA 157

Query: 129 FLYLARKL 136
           FL  A+K+
Sbjct: 158 FLEAAKKI 165

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.0 bits (191), Expect = 6e-19
 Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 4/138 (2%)

Query: 3   VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 62
           +    K  +     P        K+    WDTAGQE+F  L   ++      ++MFD+T+
Sbjct: 40  IDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTS 99

Query: 63  RLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV--TFHRKKNLQYYEIS 118
           + ++ NV  W   L     CEN  IVL GNK D+ +++   ++       K  + Y+E S
Sbjct: 100 QQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETS 159

Query: 119 AKSNYNFEKPFLYLARKL 136
           A +  N EK    L   +
Sbjct: 160 AATGQNVEKAVETLLDLI 177

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.1 bits (186), Expect = 2e-18
 Identities = 42/132 (31%), Positives = 72/132 (54%), Gaps = 3/132 (2%)

Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
             TIGVE        +  +I+   WDTAGQE F  +   YY     A++++D+T R T+ 
Sbjct: 33  DLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN 92

Query: 68  NVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQV--TFHRKKNLQYYEISAKSNYN 124
           ++ +W  D  +    N+ I+L GNK D+++R+   ++    F R+  L + E SAK+  N
Sbjct: 93  HLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACN 152

Query: 125 FEKPFLYLARKL 136
            E+ F+  A+++
Sbjct: 153 VEEAFINTAKEI 164

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.7 bits (185), Expect = 3e-18
 Identities = 27/127 (21%), Positives = 61/127 (48%), Gaps = 4/127 (3%)

Query: 14  EVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWH 73
           + +  +   +         DTAG E+F  +RD Y  +GQ  I+++ +  + +++++    
Sbjct: 38  DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMR 97

Query: 74  RDL--CRVCENIPIVLCGNKVDVKNRQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPF 129
             +   +  E +P++L GNKVD+++ +  +         +    + E SAKS    ++ F
Sbjct: 98  DQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELF 157

Query: 130 LYLARKL 136
             + R++
Sbjct: 158 AEIVRQM 164

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.3 bits (181), Expect = 1e-17
 Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 3/129 (2%)

Query: 11  IGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV- 69
           IG          +   ++F  WDTAGQE++  L   YY   Q AI+++D+T   ++    
Sbjct: 39  IGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAK 98

Query: 70  PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFH--RKKNLQYYEISAKSNYNFEK 127
                   +   NI I L GNK D+ N++    Q         +L + E SAK++ N  +
Sbjct: 99  NWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNE 158

Query: 128 PFLYLARKL 136
            F+ +A+KL
Sbjct: 159 IFMAIAKKL 167

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.9 bits (180), Expect = 1e-17
 Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 6/132 (4%)

Query: 11  IGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV- 69
           IG          N   ++F  WDTAGQE+F  L   YY + Q A++++DVT   ++    
Sbjct: 36  IGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKAR 95

Query: 70  PTWHRDLCRVCENIPIVLCGNKVDV-----KNRQVKAKQVTFHRKKNLQYYEISAKSNYN 124
                   +  ++I I L GNK+D+     + +  + +      +K L ++E SAK+  N
Sbjct: 96  HWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGEN 155

Query: 125 FEKPFLYLARKL 136
               FL +  K+
Sbjct: 156 VNDVFLGIGEKI 167

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.1 bits (173), Expect = 2e-16
 Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 7/134 (5%)

Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           TIGVE    D   +   +    WDTAGQE+F  LR  +Y    C ++ F V    +++N+
Sbjct: 38  TIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL 97

Query: 70  PTWHRDLCRVCE-----NIPIVLCGNKVDVKNRQVKAKQVT--FHRKKNLQYYEISAKSN 122
             W ++     +     + P V+ GNK+D+  RQV  ++         +  Y+E SAK  
Sbjct: 98  SNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDA 157

Query: 123 YNFEKPFLYLARKL 136
            N    F    R++
Sbjct: 158 TNVAAAFEEAVRRV 171

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 69.6 bits (169), Expect = 7e-16
 Identities = 33/125 (26%), Positives = 64/125 (51%), Gaps = 4/125 (3%)

Query: 16  HPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD 75
           +      +  +++    DTAGQE +  +RD Y+  G+  + +F +T   ++     +   
Sbjct: 41  YRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQ 100

Query: 76  LCRV--CENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLY 131
           + RV   EN+P +L GNK D+++++  + +       + N+ Y E SAK+  N +K F  
Sbjct: 101 ILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD 160

Query: 132 LARKL 136
           L R++
Sbjct: 161 LMREI 165

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.9 bits (167), Expect = 1e-15
 Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 3/126 (2%)

Query: 14  EVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWH 73
           + +      +         DTAGQE++  +RD Y   G+  + +F +    +++++  + 
Sbjct: 38  DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97

Query: 74  RDLCRV--CENIPIVLCGNKVDVKNRQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 130
             + RV   +++P+VL GNK D+  R V   +     R   + Y E SAK+    E  F 
Sbjct: 98  EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157

Query: 131 YLARKL 136
            L R++
Sbjct: 158 TLVREI 163

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.1 bits (160), Expect = 1e-14
 Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 3/112 (2%)

Query: 28  RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIV 86
               WDTAGQE+F  L   YY     AI+++D+T   +++ V          +   I + 
Sbjct: 53  NLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLC 112

Query: 87  LCGNKVDVKNRQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           + GNK+D++  +  + Q   ++      ++Y  SAK N   E+ FL L +++
Sbjct: 113 IVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 164

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.0 bits (157), Expect = 3e-14
 Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 3/129 (2%)

Query: 11  IGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV- 69
           IG               +F  WDTAG E+F  L   YY     AII++D+T   T+  + 
Sbjct: 37  IGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLK 96

Query: 70  PTWHRDLCRVCENIPIVLCGN--KVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 127
                       +I + + GN   +      ++     +    +  + E SAK+  N  +
Sbjct: 97  NWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININE 156

Query: 128 PFLYLARKL 136
            F+ ++R++
Sbjct: 157 LFIEISRRI 165

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.6 bits (156), Expect = 4e-14
 Identities = 36/128 (28%), Positives = 67/128 (52%), Gaps = 5/128 (3%)

Query: 14  EVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWH 73
           + +      +C +      DTAG E+F  +RD Y  +GQ   +++ +TA+ T+ ++    
Sbjct: 38  DSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLR 97

Query: 74  RDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH---RKKNLQYYEISAKSNYNFEKP 128
             + RV   E++P++L GNK D+++ +V  K+   +   +  N  + E SAKS  N  + 
Sbjct: 98  EQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEI 157

Query: 129 FLYLARKL 136
           F  L R++
Sbjct: 158 FYDLVRQI 165

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 64.3 bits (155), Expect = 5e-14
 Identities = 25/134 (18%), Positives = 43/134 (32%), Gaps = 7/134 (5%)

Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           T    +           I F  WD  GQ+K   L   Y+ + Q  I + D   R      
Sbjct: 27  TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEA 86

Query: 70  PTWHRDLCR--VCENIPIVLCGNKVDVKNRQVKAK-----QVTFHRKKNLQYYEISAKSN 122
                 +       +  +++  NK D+ N    A+      +   R +N       A S 
Sbjct: 87  REELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSG 146

Query: 123 YNFEKPFLYLARKL 136
               +   +L+ +L
Sbjct: 147 DGLYEGLDWLSNQL 160

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.8 bits (151), Expect = 2e-13
 Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 2/110 (1%)

Query: 29  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLC 88
              WDTAGQE+F  +   YY   Q  +++F  T R +++ + +W   +     +IP  L 
Sbjct: 53  LMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALV 112

Query: 89  GNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
            NK+D+ +       +     ++  L++Y  S K + N  + F YLA K 
Sbjct: 113 QNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 162

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.2 bits (147), Expect = 1e-12
 Identities = 34/129 (26%), Positives = 64/129 (49%), Gaps = 4/129 (3%)

Query: 12  GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT 71
             + +      +    R    DTAGQE+FG +R+ Y   G   +++F +  R ++  V  
Sbjct: 39  IEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGK 98

Query: 72  WHRDLCRVC--ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEK 127
               + RV   ++ P+VL GNK D+++++   +++   F    ++ Y+E SAK   N ++
Sbjct: 99  LFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDE 158

Query: 128 PFLYLARKL 136
            F  L R +
Sbjct: 159 AFEQLVRAV 167

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (145), Expect = 2e-12
 Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 4/127 (3%)

Query: 14  EVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWH 73
           + +      +    R    DTAGQE+FG +R+ Y   G+  +++F VT R +++ +  + 
Sbjct: 40  DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQ 99

Query: 74  RDLCRVC--ENIPIVLCGNK--VDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 129
           R + RV   +  P++L GNK  +D + +  + +     R+  + Y E SAK   N ++ F
Sbjct: 100 RQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAF 159

Query: 130 LYLARKL 136
             L R +
Sbjct: 160 HELVRVI 166

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 60.0 bits (144), Expect = 3e-12
 Identities = 26/134 (19%), Positives = 41/134 (30%), Gaps = 7/134 (5%)

Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
           T    V           ++F  WD  GQ+K   L   YY   Q  I + D   R      
Sbjct: 39  TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEA 98

Query: 70  PTWHRDLCRVCE--NIPIVLCGNKVDVKNRQVKAK-----QVTFHRKKNLQYYEISAKSN 122
                 +    E  +  I++  NK D+ +     +      +T  R +N       A S 
Sbjct: 99  RQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSG 158

Query: 123 YNFEKPFLYLARKL 136
               +   +L    
Sbjct: 159 DGLYEGLTWLTSNY 172

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.0 bits (144), Expect = 3e-12
 Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 16/139 (11%)

Query: 14  EVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWH 73
           + +  +   +   +    WDTAGQE +  LR   Y     ++I F + +  +++NV    
Sbjct: 40  DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKW 99

Query: 74  RD-LCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR---------------KKNLQYYEI 117
              +   C N PI+L G K+D+++ +   +++   +                  ++Y E 
Sbjct: 100 YPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 159

Query: 118 SAKSNYNFEKPFLYLARKL 136
           SA +    +  F    R +
Sbjct: 160 SALTQRGLKTVFDEAIRAV 178

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.7 bits (143), Expect = 4e-12
 Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 9/126 (7%)

Query: 20  FFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV 79
                       WDTAGQE+F  L   +Y    C ++++DVT   +++N+ +W  +    
Sbjct: 45  TVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVH 104

Query: 80  C-----ENIPIVLCGNKVDVKNRQVKAK----QVTFHRKKNLQYYEISAKSNYNFEKPFL 130
                 E  P V+ GNK+D +  +        Q       ++  +  SAK+  N +  F 
Sbjct: 105 ANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFE 164

Query: 131 YLARKL 136
            +AR  
Sbjct: 165 EIARSA 170

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.1 bits (139), Expect = 1e-11
 Identities = 37/134 (27%), Positives = 66/134 (49%), Gaps = 8/134 (5%)

Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL-RDGYYIHGQCAIIMFDVTARLTY 66
           +ATIGV+        +  +I+   WDTAGQE+F       YY +    + ++D+T   ++
Sbjct: 32  EATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASF 91

Query: 67  KNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV--TFHRKKNLQYYEISAKS- 121
            ++P W  +  +     +IP +L GNK D+++       +   F    ++  +E SAK+ 
Sbjct: 92  HSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNP 151

Query: 122 --NYNFEKPFLYLA 133
             N + E  F+ LA
Sbjct: 152 NDNDHVEAIFMTLA 165

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (139), Expect = 2e-11
 Identities = 25/145 (17%), Positives = 50/145 (34%), Gaps = 17/145 (11%)

Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
             T+                    +DTAGQE +  LR   Y      ++ F V +  +++
Sbjct: 33  VPTVFDNYAVTVMIGG-EPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE 91

Query: 68  NVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK---------------KN 111
           NV           C   P +L G ++D+++     +++  +++               K 
Sbjct: 92  NVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKA 151

Query: 112 LQYYEISAKSNYNFEKPFLYLARKL 136
           ++Y E SA +    +  F       
Sbjct: 152 VKYVECSALTQKGLKNVFDEAILAA 176

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.8 bits (138), Expect = 2e-11
 Identities = 49/136 (36%), Positives = 72/136 (52%), Gaps = 7/136 (5%)

Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
           KATIG +    +   +   +    WDTAGQE+F  L   +Y    C +++FDVTA  T+K
Sbjct: 32  KATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFK 91

Query: 68  NVPTWHRDLCRV-----CENIPIVLCGNKVDVKNRQVKAKQV--TFHRKKNLQYYEISAK 120
            + +W  +          EN P V+ GNK+D++NRQV  K+     + K N+ Y+E SAK
Sbjct: 92  TLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAK 151

Query: 121 SNYNFEKPFLYLARKL 136
              N E+ F  +AR  
Sbjct: 152 EAINVEQAFQTIARNA 167

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 2e-11
 Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 5/124 (4%)

Query: 16  HPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD 75
           +      +         DT G  +F  ++      G   I+++ +T+R + + +   +  
Sbjct: 39  YRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQ 98

Query: 76  LCRV---CENIPIVLCGNK--VDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 130
           +C +    E+IPI+L GNK           ++     R     + E SAK N+N ++ F 
Sbjct: 99  ICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQ 158

Query: 131 YLAR 134
            L  
Sbjct: 159 ELLN 162

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.4 bits (137), Expect = 3e-11
 Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 5/126 (3%)

Query: 16  HPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD 75
           +      +         DTAGQE+F  +R+ Y   G   +I++ VT + ++++V  +H+ 
Sbjct: 41  YLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQL 100

Query: 76  LCRVCENI--PIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKS-NYNFEKPFL 130
           + RV +    P++L  NKVD+ + +   + +      K N+ Y E SAK    N +K F 
Sbjct: 101 ILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH 160

Query: 131 YLARKL 136
            L R +
Sbjct: 161 DLVRVI 166

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 55.7 bits (133), Expect = 9e-11
 Identities = 18/129 (13%), Positives = 40/129 (31%), Gaps = 7/129 (5%)

Query: 15  VHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHR 74
                        +   WD  GQ K       Y+ +    I + D   R  ++       
Sbjct: 48  QGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELT 107

Query: 75  DLCRV--CENIPIVLCGNKVDVKNRQVKAK-----QVTFHRKKNLQYYEISAKSNYNFEK 127
           +L        +P+++  NK D+      ++      +   R +  Q    SA +    + 
Sbjct: 108 ELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQD 167

Query: 128 PFLYLARKL 136
              ++ + +
Sbjct: 168 GMNWVCKNV 176

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 7e-10
 Identities = 24/138 (17%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 14  EVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWH 73
           + + +       +     +DTAGQE +  LR   Y      +I F V    +++NV    
Sbjct: 44  DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEW 103

Query: 74  RDLCR-VCENIPIVLCGNKVDVKNRQVKAKQVTFHRK---------------KNLQYYEI 117
               +    N+P +L G ++D+++      ++   ++                   Y E 
Sbjct: 104 VPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC 163

Query: 118 SAKSNYNFEKPFLYLARK 135
           SA +    +  F      
Sbjct: 164 SALTQKGLKTVFDEAIIA 181

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 53.1 bits (126), Expect = 1e-09
 Identities = 16/121 (13%), Positives = 35/121 (28%), Gaps = 7/121 (5%)

Query: 23  NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--C 80
           +   ++   WD  GQ         YY      I + D T +            + +    
Sbjct: 57  SYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEEL 116

Query: 81  ENIPIVLCGNKVDVKN-----RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 135
           ++  +++  NK D           K   +   + ++      SA       +   +L   
Sbjct: 117 QDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDV 176

Query: 136 L 136
           +
Sbjct: 177 I 177

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 52.4 bits (124), Expect = 2e-09
 Identities = 19/136 (13%), Positives = 41/136 (30%), Gaps = 7/136 (5%)

Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
            TI   +            +   WD  GQ+        Y+      I + D   R   ++
Sbjct: 28  DTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQD 87

Query: 69  VPTWHRDLCRV--CENIPIVLCGNKVDVKNR-----QVKAKQVTFHRKKNLQYYEISAKS 121
                + L          +++  NK D+          +A ++   R  + +    SA +
Sbjct: 88  CQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVT 147

Query: 122 NYNFEKPFLYLARKLA 137
             +      +L   ++
Sbjct: 148 GEDLLPGIDWLLDDIS 163

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 2e-09
 Identities = 32/145 (22%), Positives = 58/145 (40%), Gaps = 17/145 (11%)

Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
             T+  E +  D   +  ++    WDTAG E +  LR   Y      ++ F + +  + +
Sbjct: 32  VPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 90

Query: 68  NVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQVTFHRK---------------KN 111
           N+P       +  C N+PI+L GNK D++N +   +++   ++                 
Sbjct: 91  NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 150

Query: 112 LQYYEISAKSNYNFEKPFLYLARKL 136
             Y E SAK+     + F    R  
Sbjct: 151 FGYMECSAKTKDGVREVFEMATRAA 175

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 51.2 bits (121), Expect = 4e-09
 Identities = 21/135 (15%), Positives = 41/135 (30%), Gaps = 7/135 (5%)

Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
                 +            RF  WD  GQE      + YY + +  I++ D T R     
Sbjct: 41  VHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISV 100

Query: 69  VPTWHRDLCRVCEN--IPIVLCGNKVDVKNRQV-----KAKQVTFHRKKNLQYYEISAKS 121
                  +    +     +++  NK DVK         +  ++T  +          A +
Sbjct: 101 TREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALT 160

Query: 122 NYNFEKPFLYLARKL 136
                +   ++  +L
Sbjct: 161 GEGLCQGLEWMMSRL 175

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.0 bits (118), Expect = 1e-08
 Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 16/144 (11%)

Query: 10  TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV 69
               E +   F  +  +I    WDT+G   +  +R   Y      +I FD++   T  +V
Sbjct: 33  PTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSV 92

Query: 70  PTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK---------------NLQ 113
               +   +  C N  ++L G K D++       +++ HR+                   
Sbjct: 93  LKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT 152

Query: 114 YYEISAKSNYNFEKPFLYLARKLA 137
           Y E SA  + N  +   ++A    
Sbjct: 153 YIECSALQSENSVRDIFHVATLAC 176

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 1e-08
 Identities = 22/126 (17%), Positives = 45/126 (35%), Gaps = 7/126 (5%)

Query: 16  HPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD 75
                    G +    WD  GQ +F  + + Y       + M D   +   +       +
Sbjct: 36  GFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHN 95

Query: 76  LCRVC--ENIPIVLCGNKVDVKN-----RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 128
           L      + IP+++ GNK D+         ++   ++  + + +  Y IS K   N +  
Sbjct: 96  LLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDIT 155

Query: 129 FLYLAR 134
             +L +
Sbjct: 156 LQWLIQ 161

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (113), Expect = 5e-08
 Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 2/116 (1%)

Query: 23  NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN 82
           +   I    W+  G+ ++              +      A     +         R  E+
Sbjct: 52  SATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTED 111

Query: 83  IPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
           IPI+L GNK D+   +  +           + ++ E SA   +N ++ F  + R++
Sbjct: 112 IPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 167

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.4 bits (111), Expect = 8e-08
 Identities = 25/140 (17%), Positives = 51/140 (36%), Gaps = 14/140 (10%)

Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
           AT+    HP       G I+F  +D  G  +   L   Y+      + + D      +  
Sbjct: 26  ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDE 85

Query: 69  VPTWHRDLCRVCE--NIPIVLCGNKVDVKNRQVKAKQVT------------FHRKKNLQY 114
                  L  + E  ++P V+ GNK+D  N   +A+  +               ++ ++ 
Sbjct: 86  ARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEV 145

Query: 115 YEISAKSNYNFEKPFLYLAR 134
           +  S      + + F +L++
Sbjct: 146 FMCSVVMRNGYLEAFQWLSQ 165

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 8e-08
 Identities = 16/99 (16%), Positives = 34/99 (34%), Gaps = 9/99 (9%)

Query: 47  YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE----NIPIVLCGNKVDVKNRQVKAK 102
           +       I +F +    +++ V   H  L  +       + + L G +  +     +  
Sbjct: 67  FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVV 126

Query: 103 -----QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 136
                +      K   YYE  A    N ++ F  +A+K+
Sbjct: 127 GDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKV 165

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 1e-07
 Identities = 19/135 (14%), Positives = 39/135 (28%), Gaps = 7/135 (5%)

Query: 9   ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN 68
            T    +           ++F  WD  G          YY +    I + D   R     
Sbjct: 31  VTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGI 90

Query: 69  VPTWHRDLCR--VCENIPIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISAKS 121
             +    +          +V+  NK D++     ++          + +  Q ++ SA  
Sbjct: 91  SKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATK 150

Query: 122 NYNFEKPFLYLARKL 136
               ++   +L   L
Sbjct: 151 GTGLDEAMEWLVETL 165

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 5e-07
 Identities = 28/124 (22%), Positives = 42/124 (33%), Gaps = 4/124 (3%)

Query: 16  HPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT--ARLTYKNVPTWH 73
                  N  +      DTAGQ+++      Y I     I+++ VT         V    
Sbjct: 41  FTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGK 100

Query: 74  RDLCRVCENIPIVLCGNKVDVKNRQVK--AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 131
                    IPI+L GNK D+   +V    +        N  + E SAK N      F  
Sbjct: 101 LLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR 160

Query: 132 LARK 135
           +  +
Sbjct: 161 IILE 164

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 9e-07
 Identities = 23/133 (17%), Positives = 51/133 (38%), Gaps = 4/133 (3%)

Query: 8   KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK 67
           +A      +      +  +     +D   Q+    L       G   +I++ VT + +++
Sbjct: 29  EAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFE 88

Query: 68  NVPTWHRDLCRV--CENIPIVLCGNKVDV--KNRQVKAKQVTFHRKKNLQYYEISAKSNY 123
                   L R    +++PI+L GNK D+         +        + ++ E SA  ++
Sbjct: 89  KASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHH 148

Query: 124 NFEKPFLYLARKL 136
           N +  F  + R++
Sbjct: 149 NVQALFEGVVRQI 161

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 2e-06
 Identities = 21/97 (21%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 45  DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKV--DVKNRQVK 100
           +G+   G+  ++++D+T R +++ V      L  + +  N+ ++L GNK   D   +   
Sbjct: 67  EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVST 126

Query: 101 AKQVTFHRKKNLQYYEISAKSNY-NFEKPFLYLARKL 136
            +      +    +YE SA +   N  + F  L R++
Sbjct: 127 EEGEKLATELACAFYECSACTGEGNITEIFYELCREV 163

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 43.1 bits (100), Expect = 4e-06
 Identities = 17/133 (12%), Positives = 39/133 (29%), Gaps = 19/133 (14%)

Query: 23  NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-- 80
               + F  +D  G  +   +   Y       + + D                L      
Sbjct: 53  TIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETI 112

Query: 81  ENIPIVLCGNKVDVKNRQVKAK-----------------QVTFHRKKNLQYYEISAKSNY 123
            N+PI++ GNK+D      + +                  +     + L+ +  S     
Sbjct: 113 ANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQ 172

Query: 124 NFEKPFLYLARKL 136
            + + F ++A+ +
Sbjct: 173 GYGEGFRWMAQYI 185

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	186
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.95
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.95
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.95
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.95
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.94
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.94
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.94
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.94
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.94
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.94
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.94
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.93
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.93
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.93
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.92
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.91
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.9
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.89
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.89
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.88
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.87
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.87
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.76
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.74
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.72
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.68
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.68
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.68
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.65
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.64
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.62
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.57
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.53
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.53
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.48
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.47
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.45
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.44
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.37
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.36
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.36
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.34
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.26
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.22
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.12
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.02
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.01
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.0
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	98.89
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	98.89
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	98.85
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	98.85
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	98.82
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	98.78
d1nrjb_	209	Signal recognition particle receptor beta-subunit	98.73
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.6
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	98.52
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.45
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.27
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.18
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	98.09
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	97.66
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.28
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.13
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.49
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	95.52
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	95.39
d1okkd2	207	GTPase domain of the signal recognition particle r	91.92
d2qy9a2	211	GTPase domain of the signal recognition particle r	89.0
d1vmaa2	213	GTPase domain of the signal recognition particle r	88.58
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	88.41
d1j8yf2	211	GTPase domain of the signal sequence recognition p	87.37
d1ls1a2	207	GTPase domain of the signal sequence recognition p	83.39
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	82.77

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.1e-32  Score=195.69  Aligned_cols=142  Identities=79%  Similarity=1.312  Sum_probs=131.2

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN   82 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~   82 (186)
                      +...|.||+|.++..+.+.+++..+.+.+|||+|+..+..++..++++++++++|||++++.||+.+..|+..+.+..++
T Consensus        28 f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~  107 (170)
T d1i2ma_          28 FEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN  107 (170)
T ss_dssp             --CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHCS
T ss_pred             CCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhccccccccccchhHHHHHHHhhccCC
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999888889


Q ss_pred             CCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCCccc
Q 029854           83 IPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHF  144 (186)
Q Consensus        83 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~  144 (186)
                      .|+++||||+|+.......+...++..++++|++|||++|.||+++|.+|++.+...++..+
T Consensus       108 ~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~~~~~~  169 (170)
T d1i2ma_         108 IPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEF  169 (170)
T ss_dssp             CCEEEEEECCCCSCSCCTTTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHHHHHHTCTTCCB
T ss_pred             CceeeecchhhhhhhhhhhHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHccCCCCCc
Confidence            99999999999988777777778888899999999999999999999999999998776654

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=3e-29  Score=180.19  Aligned_cols=136  Identities=29%  Similarity=0.527  Sum_probs=125.8

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN   82 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~   82 (186)
                      +...|.||+|.++.......++..+.+.+|||+|++++..++..++++++++++|||++++.||+++..|++.+.+..++
T Consensus        27 ~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~  106 (164)
T d1z2aa1          27 FTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGD  106 (164)
T ss_dssp             CCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCS
T ss_pred             CCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEEEeccchhhhhhcccccccccccCCC
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999988889


Q ss_pred             CCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           83 IPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        83 ~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      .|+++||||+|+.+ +.+..+ ...+++.++++|++|||++|.||+++|+.|++++.+
T Consensus       107 ~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~lq  164 (164)
T d1z2aa1         107 IPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ  164 (164)
T ss_dssp             CCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred             ceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHHHHhC
Confidence            99999999999975 455544 568999999999999999999999999999998864

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.1e-28  Score=174.18  Aligned_cols=137  Identities=26%  Similarity=0.487  Sum_probs=117.6

Q ss_pred             CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-
Q 029854            2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-   80 (186)
Q Consensus         2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-   80 (186)
                      .+...|.||++.++..+....++..+.+.+||++|+..+..++..++++++++|+|||++++.||+.+..|++.+.... 
T Consensus        27 ~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~  106 (167)
T d1z08a1          27 KFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG  106 (167)
T ss_dssp             CCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHG
T ss_pred             CCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEEEEeCCchhHHHhhhhhhhhcccccc
Confidence            3567899999999999999999999999999999999999999999999999999999999999999999998877654 


Q ss_pred             CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           81 ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      ...|++|||||+|+.. +.+..+ ...++++++++|++|||++|.||+++|.+|++.+.+
T Consensus       107 ~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~~~i~~  166 (167)
T d1z08a1         107 NEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE  166 (167)
T ss_dssp             GGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred             cccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHHHHHhh
Confidence            6789999999999974 455444 568999999999999999999999999999999875

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=9.8e-28  Score=172.58  Aligned_cols=134  Identities=23%  Similarity=0.246  Sum_probs=120.3

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      +...|.||++.++. +.+.+++..+.+.+|||+|++.+..++..++++++++|+|||++++.||+.+..|+..+.+..  
T Consensus        29 f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~  107 (167)
T d1xtqa1          29 FVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK  107 (167)
T ss_dssp             CCSCCCSSCCEEEE-EEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCS
T ss_pred             CCcccCcceecccc-eEEecCcEEEEeeecccccccccccccchhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhcccc
Confidence            56789999998864 678899999999999999999999999999999999999999999999999999999987764  


Q ss_pred             CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854           81 ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                      .+.|++|||||+|+.. +.+..+ ..+++++++++|++|||++|.||+++|+.|++.+.
T Consensus       108 ~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~li~~~~  166 (167)
T d1xtqa1         108 VQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAE  166 (167)
T ss_dssp             SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             cccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHHhc
Confidence            5789999999999874 455554 56899999999999999999999999999998763

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.95  E-value=6.5e-28  Score=173.97  Aligned_cols=135  Identities=27%  Similarity=0.430  Sum_probs=118.1

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      +...|.||+|.++. +.+.+++..+.+.+||++|++.+..++..++++++++|+|||++++.||+.+..|++.+.+..  
T Consensus        29 f~~~~~~T~~~~~~-~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~  107 (168)
T d1u8za_          29 FVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED  107 (168)
T ss_dssp             CCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC
T ss_pred             CCcccCCccccccc-cccccccccccccccccccccchhhhhhhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhCC
Confidence            56789999998765 677889999999999999999999999999999999999999999999999999999998764  


Q ss_pred             CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           81 ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      .+.|+++||||+|+.+ +.+..+ ...+++.++++|++|||++|.||+++|.+|++.+..
T Consensus       108 ~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~~  167 (168)
T d1u8za_         108 ENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA  167 (168)
T ss_dssp             TTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             CCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHHHHHHHC
Confidence            5789999999999975 445444 568999999999999999999999999999998754

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=1.4e-27  Score=172.30  Aligned_cols=137  Identities=25%  Similarity=0.493  Sum_probs=123.0

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...+.||+|.++..+.+...+..+.+++|||||+++|..++..++++||++|+|||++++.++..+..|+..+.+.. .
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~  109 (169)
T d3raba_          30 FTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD  109 (169)
T ss_dssp             CCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCS
T ss_pred             CCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECccchhhhhhhhhhhhhhcccCC
Confidence            467889999999999999999999999999999999999999999999999999999999999999999888877654 6


Q ss_pred             CCCEEEEEeCCCCCCc-ccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           82 NIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      ..|+++|+||+|+.+. .+.. +...+++.++++|++|||++|.||+++|++|++.+.++
T Consensus       110 ~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~ek  169 (169)
T d3raba_         110 NAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK  169 (169)
T ss_dssp             CCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHTC
T ss_pred             cceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHHHhhC
Confidence            7899999999999863 4443 35688899999999999999999999999999988753

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=1.9e-27  Score=171.62  Aligned_cols=135  Identities=30%  Similarity=0.389  Sum_probs=120.3

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      +...|.||++..+ .+.+.+++..+.+.+||++|++.+..++..++++|+++++|||++++.||+.+..|+..+.+..  
T Consensus        29 ~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~  107 (169)
T d1x1ra1          29 FVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR  107 (169)
T ss_dssp             CCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS
T ss_pred             CCcccCcceeecc-ccccccccccccccccccccccccccchhhhhhhccEEEEecccccchhhhccchhhHHHHhhccc
Confidence            4567899998665 4677889999999999999999999999999999999999999999999999999999987764  


Q ss_pred             CCCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCC-CchHHHHHHHHHHhC
Q 029854           81 ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNY-NFEKPFLYLARKLAG  138 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~~  138 (186)
                      .+.|++++|||+|+.+ +.+.. +..+++++++++|++|||++|. ||+++|..|++.+.+
T Consensus       108 ~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~~l~~~i~~  168 (169)
T d1x1ra1         108 ESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ  168 (169)
T ss_dssp             SCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred             cCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHHHHHHHHHh
Confidence            5799999999999985 45554 4678999999999999999986 999999999998865

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.1e-27  Score=171.53  Aligned_cols=135  Identities=26%  Similarity=0.420  Sum_probs=115.6

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHH-HHHHHHhhcC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCE   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~-~~~~~~~~~~   81 (186)
                      ++..|.||+| +...+...+++..+.++|||++|++.|..++..++++++++|+|||++++.||+++.. |...+.+..+
T Consensus        27 f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~  105 (177)
T d1kmqa_          27 FPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP  105 (177)
T ss_dssp             CCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST
T ss_pred             CCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHhCC
Confidence            5678999998 5555778889999999999999999999999999999999999999999999998865 5566666668


Q ss_pred             CCCEEEEEeCCCCCCc-------------ccCh-HHHHHHHHcC-CcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           82 NIPIVLCGNKVDVKNR-------------QVKA-KQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~-------------~~~~-~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      +.|++|||||+|+.+.             .+.. +...++++++ .+|++|||++|.||+++|+.+++.+++
T Consensus       106 ~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt~~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         106 NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ  177 (177)
T ss_dssp             TSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             CCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhC
Confidence            8999999999999642             2333 3557888887 589999999999999999999998764

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.6e-27  Score=172.11  Aligned_cols=136  Identities=33%  Similarity=0.566  Sum_probs=123.0

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...+.||++.++..+++.+++..+.+.+|||||++.|..++..++++|+++++|||++++.+|+.+..|+..+.+.. .
T Consensus        30 f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~  109 (171)
T d2ew1a1          30 FPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASN  109 (171)
T ss_dssp             CCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT
T ss_pred             CCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEeeecccchhhhhhhhhhhhhcccccc
Confidence            567899999999999999999999999999999999999999999999999999999999999999999999887765 5


Q ss_pred             CCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           82 NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      ..|++|||||+|+.+ ..+..+ ...+++.+++++++|||++|.||+++|.+|++.+..
T Consensus       110 ~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~l~~~l~~  168 (171)
T d2ew1a1         110 KVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLIS  168 (171)
T ss_dssp             TCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHHHHHHHHH
Confidence            789999999999975 344444 568899999999999999999999999999988754

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.7e-27  Score=171.61  Aligned_cols=132  Identities=19%  Similarity=0.238  Sum_probs=105.0

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCC
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENI   83 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~   83 (186)
                      .+.||.+.. +.+.+.+++..+.+.+|||+|++++..++..++++||++|+|||++++.||+.+..|+..+....  .+.
T Consensus        28 ~~~~~~~~~-~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~  106 (168)
T d2gjsa1          28 PEAEAAGHT-YDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDV  106 (168)
T ss_dssp             ------CEE-EEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CC
T ss_pred             CcCCeeeee-ecceeeccccccceeeeecccccccceecccchhhhhhhceeccccccccccccccccchhhcccccccc
Confidence            455666655 45678899999999999999999999999999999999999999999999999999999987764  468


Q ss_pred             CEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           84 PIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        84 p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      |+++||||+|+.+ +++.. +...+++.++++|++|||++|.||+++|..|++.+..
T Consensus       107 piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~~i~~  163 (168)
T d2gjsa1         107 PIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRL  163 (168)
T ss_dssp             CEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             eEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHHHHHH
Confidence            9999999999975 44444 4568899999999999999999999999999988754

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.5e-27  Score=173.38  Aligned_cols=135  Identities=20%  Similarity=0.282  Sum_probs=116.1

Q ss_pred             CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHH-HHHHHHHhhc
Q 029854            2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVC   80 (186)
Q Consensus         2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~-~~~~~~~~~~   80 (186)
                      .+..+|.||++ ++..+.+.+++..+.+.+|||+|++.|..++..++++|+++++|||++++.||+++. .|...+....
T Consensus        33 ~f~~~~~~Ti~-~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~  111 (185)
T d2atxa1          33 AFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA  111 (185)
T ss_dssp             SCCCSCCCSSC-CCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS
T ss_pred             CCCCcCCCcee-eeeeEEEeeCCceEEeecccccccchhhhhhhhcccccceeeeccccchHHHHHHHHHHHHHHHHhcC
Confidence            35678999998 556677888999999999999999999999999999999999999999999999875 5666666666


Q ss_pred             CCCCEEEEEeCCCCCC-------------cccChH-HHHHHHHcC-CcEEEeccCCCCCchHHHHHHHHHHh
Q 029854           81 ENIPIVLCGNKVDVKN-------------RQVKAK-QVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~-------------~~~~~~-~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                      ++.|+++||||+|+.+             +.+..+ ..++++.++ ++|++|||++|.||+++|+.+++.++
T Consensus       112 ~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~SAk~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         112 PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEecCCCCcCHHHHHHHHHHHHc
Confidence            8899999999999864             233333 557888887 78999999999999999999999875

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2e-27  Score=170.34  Aligned_cols=136  Identities=29%  Similarity=0.488  Sum_probs=123.7

Q ss_pred             CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-
Q 029854            2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-   80 (186)
Q Consensus         2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-   80 (186)
                      .+...|.||++.++.......++..+.+.+||++|++.+..++..++++++++++|||++++.||+++..|+..+.+.. 
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~  103 (164)
T d1yzqa1          24 SFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG  103 (164)
T ss_dssp             CCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT
T ss_pred             CCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEeeccccccchhhhHhhHHHHHHhcC
Confidence            3567899999999999999999999999999999999999999999999999999999999999999999999887764 


Q ss_pred             CCCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854           81 ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                      ++.|+++||||+|+.+ +.+.. +..++++.++++|++|||++|.||+++|.+|+++|.
T Consensus       104 ~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~l~  162 (164)
T d1yzqa1         104 SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP  162 (164)
T ss_dssp             TSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHSC
T ss_pred             CCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHhhC
Confidence            6899999999999975 44443 466899999999999999999999999999999875

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.5e-27  Score=170.20  Aligned_cols=136  Identities=29%  Similarity=0.434  Sum_probs=120.5

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      ++..|.||.+ ++..+.+.+++..+.+.+|||+|+++|..++..++++++++|+|||++++.||+.+..|+..+.+..  
T Consensus        31 f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~  109 (173)
T d2fn4a1          31 FVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDR  109 (173)
T ss_dssp             CCSSCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTS
T ss_pred             CCcccccccc-cceeeEeccCCeeeeeeccccccccccccccchhhccceeeeeecccccccccchhhhhhHHHHHHhcc
Confidence            5667888865 6667889999999999999999999999999999999999999999999999999999999987653  


Q ss_pred             CCCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           81 ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      .+.|++|||||+|+.+ +.... +...+++.++++|++|||++|.||+++|..|++.+.+.
T Consensus       110 ~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~k~  170 (173)
T d2fn4a1         110 DDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKY  170 (173)
T ss_dssp             SCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence            6789999999999975 34443 46789999999999999999999999999999988654

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5.8e-27  Score=168.41  Aligned_cols=134  Identities=34%  Similarity=0.524  Sum_probs=121.8

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      ++..+.||++.++....+.+++..+.+.+|||+|++.+..++..+++++|++|+|||+++..||..+..|+..+.+.. .
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~  108 (166)
T d1z0fa1          29 FMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP  108 (166)
T ss_dssp             CCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT
T ss_pred             CCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhccc
Confidence            567789999999999999999999999999999999999999999999999999999999999999999999888765 5


Q ss_pred             CCCEEEEEeCCCCCCc-ccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029854           82 NIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      ..|++++|||+|+... .+.. +...+++.++++|++|||++|.||+++|..|++.+
T Consensus       109 ~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i~~~i  165 (166)
T d1z0fa1         109 NTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI  165 (166)
T ss_dssp             TCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            7899999999999753 3333 46688999999999999999999999999999876

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.7e-27  Score=170.81  Aligned_cols=134  Identities=22%  Similarity=0.289  Sum_probs=117.4

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      +...|.||+|..+. ....+++..+.+.+||++|++.|..++..++++|+++|+|||++++.||+.+..|+..+.+..  
T Consensus        27 f~~~~~~T~~~~~~-~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~  105 (171)
T d2erxa1          27 FRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGD  105 (171)
T ss_dssp             CCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC-
T ss_pred             CCCccCcceeeccc-cceeeccccceeccccccccccccccccccccceeEEEEEeecccccchhcccchhhhhhhhhcc
Confidence            46689999996664 467789999999999999999999999999999999999999999999999999988886643  


Q ss_pred             -CCCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854           81 -ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus        81 -~~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                       .+.|++|||||+|+.+ +++.. +..++++.++++|++|||++|.||+++|..|++.+.
T Consensus       106 ~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~~~  165 (171)
T d2erxa1         106 VESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEK  165 (171)
T ss_dssp             --CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred             CCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHHHHHHH
Confidence             5789999999999974 45554 466899999999999999999999999999997654

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3e-26  Score=168.27  Aligned_cols=138  Identities=20%  Similarity=0.326  Sum_probs=117.6

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHH-HHHHHHhhcC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCE   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~-~~~~~~~~~~   81 (186)
                      ++..|.||+|.. ......+++..+.+.||||+|+++|..++..++++++++++|||++++.||+++.. |...+.+...
T Consensus        28 f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~  106 (191)
T d2ngra_          28 FPSEYVPTVFDN-YAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP  106 (191)
T ss_dssp             CCSSCCCCSEEE-EEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT
T ss_pred             CCCCcCCceeee-cceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecccccchHHHHHHHHHHHHHHHhhcCC
Confidence            567899999954 55677789999999999999999999999999999999999999999999999975 5665666668


Q ss_pred             CCCEEEEEeCCCCCCc-------------ccChH-HHHHHHHc-CCcEEEeccCCCCCchHHHHHHHHHHhCCCC
Q 029854           82 NIPIVLCGNKVDVKNR-------------QVKAK-QVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKLAGDPN  141 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~-------------~~~~~-~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  141 (186)
                      +.|+++|+||+|+.+.             .+..+ ..++++.+ +++|++|||++|.||+++|+.+++.+.+.+.
T Consensus       107 ~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~V~e~f~~l~~~~~~~~~  181 (191)
T d2ngra_         107 KTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE  181 (191)
T ss_dssp             TCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTTTCTTHHHHHHHHHHHHTSCCS
T ss_pred             CCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHhcCcC
Confidence            8999999999998632             23333 45788876 4799999999999999999999999877654

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.4e-26  Score=170.49  Aligned_cols=139  Identities=29%  Similarity=0.477  Sum_probs=124.5

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      ++..|.||+|..+....+.+++..+.+.||||||+++|..++..++++|+++|+|||++++.+|..+..|...+.+.. .
T Consensus        31 ~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~  110 (194)
T d2bcgy1          31 YTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATS  110 (194)
T ss_dssp             CCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT
T ss_pred             CCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccC
Confidence            567899999999999999999999999999999999999999999999999999999999999999998888887654 6


Q ss_pred             CCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCC
Q 029854           82 NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN  141 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  141 (186)
                      +.|+++|+||+|+.+ +.+..+ ...++...+++|++|||++|.||+++|..+++.+.....
T Consensus       111 ~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~~l~~~i~~~~~  172 (194)
T d2bcgy1         111 TVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMS  172 (194)
T ss_dssp             TCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHHCC
T ss_pred             CceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHHHHHHHHHHHhh
Confidence            899999999999986 444444 457888889999999999999999999999999876543

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.1e-26  Score=167.58  Aligned_cols=137  Identities=31%  Similarity=0.552  Sum_probs=123.7

Q ss_pred             CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-
Q 029854            2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-   80 (186)
Q Consensus         2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-   80 (186)
                      .+...+.||++.++.......++..+.+.+|||+|++.|..++..++++++++|+|||.++..+|+.+..|...+.+.. 
T Consensus        30 ~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~  109 (170)
T d1r2qa_          30 QFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS  109 (170)
T ss_dssp             CCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC
T ss_pred             CCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhccC
Confidence            3567889999999999999999999999999999999999999999999999999999999999999999988887654 


Q ss_pred             CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           81 ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      ++.|++|||||+|+.+ +.+..+ ..++++.++++|++|||++|.||+++|..|++.|.+
T Consensus       110 ~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~~~i~~  169 (170)
T d1r2qa_         110 PNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK  169 (170)
T ss_dssp             TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTSCC
T ss_pred             CCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHHHHHhh
Confidence            6899999999999975 455555 568889999999999999999999999999988764

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=1.5e-26  Score=166.33  Aligned_cols=135  Identities=27%  Similarity=0.460  Sum_probs=122.9

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...|.||++..+.......++..+.+.+|||+|++++..++..++++++++|+|||++++.+|+.+..|+..+.+.. .
T Consensus        29 f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  108 (167)
T d1z0ja1          29 FDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP  108 (167)
T ss_dssp             CCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT
T ss_pred             CCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEEEeeechhhhhhhHHHhhhhhhhccCC
Confidence            567899999999999999999999999999999999999999999999999999999999999999999998887765 6


Q ss_pred             CCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854           82 NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                      +.|+++||||+|+.+ +.+.. +..++++.++++|++|||++|.||+++|.+|++.|.
T Consensus       109 ~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l~~~i~  166 (167)
T d1z0ja1         109 SIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP  166 (167)
T ss_dssp             TSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred             cceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHhCC
Confidence            899999999999975 44544 466899999999999999999999999999999873

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=1.2e-26  Score=167.81  Aligned_cols=136  Identities=27%  Similarity=0.508  Sum_probs=106.6

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      ++..+.||+|.++..+.+.+++..+.+.+|||||++.|..++..++++++++|+|||++++.||..+..|...+.... .
T Consensus        31 ~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  110 (173)
T d2fu5c1          31 FNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA  110 (173)
T ss_dssp             ---CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT
T ss_pred             CCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccC
Confidence            456788999999999999999999999999999999999999999999999999999999999999999988887654 6


Q ss_pred             CCCEEEEEeCCCCCCc-ccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           82 NIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      +.|+++|+||+|+... .... +...++...+++|++|||++|.||+++|.+|++.+..
T Consensus       111 ~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~l~~~i~~  169 (173)
T d2fu5c1         111 DVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKA  169 (173)
T ss_dssp             TCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHHH
T ss_pred             CceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            7999999999999863 3333 3557888899999999999999999999999998854

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.7e-26  Score=163.76  Aligned_cols=134  Identities=26%  Similarity=0.513  Sum_probs=113.0

Q ss_pred             CccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-CC
Q 029854            4 SVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-EN   82 (186)
Q Consensus         4 ~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~~   82 (186)
                      +..+.||+|.++....+.+++..+.++||||||++++..++..+++++|++++|||++++.||..+..|+..+.+.. ..
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~  112 (170)
T d2g6ba1          33 AGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHD  112 (170)
T ss_dssp             CCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT
T ss_pred             cccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeEEEecCCcccchhhhhhhhhhhhhccCCC
Confidence            45678889999999999999999999999999999999999999999999999999999999999999888877665 57


Q ss_pred             CCEEEEEeCCCCCCc-ccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854           83 IPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus        83 ~p~ilv~nK~Dl~~~-~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                      .|+++|+||+|+.+. .+..+ ...+++.++++|++|||++|.||+++|.+|++.|.
T Consensus       113 ~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~l~~~i~  169 (170)
T d2g6ba1         113 VALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK  169 (170)
T ss_dssp             CEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHcC
Confidence            899999999999864 44444 56889999999999999999999999999998875

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.3e-26  Score=167.80  Aligned_cols=136  Identities=22%  Similarity=0.404  Sum_probs=115.8

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHH-HHHHHHhhcC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCE   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~-~~~~~~~~~~   81 (186)
                      +...|.||++ +...+.+.+++..+.+.+||++|++.|..++..++++++++|+|||++++.||+++.. |...+.+...
T Consensus        30 f~~~~~~ti~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~  108 (183)
T d1mh1a_          30 FPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP  108 (183)
T ss_dssp             CCSSCCCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST
T ss_pred             CCccccccee-eceeeeeeccCcceEEEeecccccccchhhhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHHhCC
Confidence            5678999998 4555778889999999999999999999999999999999999999999999999875 6666666667


Q ss_pred             CCCEEEEEeCCCCCCcc-------------cC-hHHHHHHHHcC-CcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           82 NIPIVLCGNKVDVKNRQ-------------VK-AKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~~-------------~~-~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      +.|++||+||+|+.+..             .. .+...+++.++ ++|++|||++|.||+++|..|++.+++.
T Consensus       109 ~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SAk~~~~V~e~F~~l~~~il~p  181 (183)
T d1mh1a_         109 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP  181 (183)
T ss_dssp             TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred             CCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCCCCCcCHHHHHHHHHHHHcCC
Confidence            89999999999985321             11 23456777776 7999999999999999999999998654

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.7e-26  Score=166.13  Aligned_cols=135  Identities=28%  Similarity=0.423  Sum_probs=117.4

Q ss_pred             CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-
Q 029854            2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-   80 (186)
Q Consensus         2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-   80 (186)
                      .+...|.||+|..+. ..+.+++..+.+++||++|++.+..++..++++++++|+|||++++.||+.+..|+..+.+.. 
T Consensus        27 ~f~~~~~~t~~~~~~-~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~  105 (167)
T d1c1ya_          27 IFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD  105 (167)
T ss_dssp             CCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC
T ss_pred             CCCCccCCccccccc-eeEEeeeeEEEeccccccCcccccccccccccccceeEEeeeccchhhhHhHHHHHHHHHHhcC
Confidence            356789999997764 567789999999999999999999999999999999999999999999999999999987753 


Q ss_pred             -CCCCEEEEEeCCCCCCc-ccChH-HHHHHHHc-CCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854           81 -ENIPIVLCGNKVDVKNR-QVKAK-QVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus        81 -~~~p~ilv~nK~Dl~~~-~~~~~-~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                       ++.|++|||||+|+... .+..+ ...+++++ +++|++|||++|.||+++|.+|++.|.
T Consensus       106 ~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~l~~~i~  166 (167)
T d1c1ya_         106 TEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN  166 (167)
T ss_dssp             CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred             CCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHHHHHHHhc
Confidence             57899999999999853 33333 45777764 689999999999999999999998874

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.6e-26  Score=166.54  Aligned_cols=135  Identities=31%  Similarity=0.528  Sum_probs=121.2

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...|.||+|.++..+.+..++..+.+.+|||+|++.+..++..++++++++|+|||++++.||+.+..|...+.... .
T Consensus        28 f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~  107 (170)
T d1ek0a_          28 FAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASK  107 (170)
T ss_dssp             CCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT
T ss_pred             CCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEEEeCCcccchhhhhhhhhhhcccccc
Confidence            567899999999999999999999999999999999999999999999999999999999999999999988776654 6


Q ss_pred             CCCEEEEEeCCCCCC----cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854           82 NIPIVLCGNKVDVKN----RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~----~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                      ..|+++++||+|+.+    +.+.. +..++++.++++|++|||++|.||+++|..|+++|.
T Consensus       108 ~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~~i~~~i~  168 (170)
T d1ek0a_         108 DIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP  168 (170)
T ss_dssp             TCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTSC
T ss_pred             ccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHHhc
Confidence            789999999999863    34444 356899999999999999999999999999987764

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=9e-27  Score=167.48  Aligned_cols=134  Identities=25%  Similarity=0.404  Sum_probs=119.0

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      +...|.||+| ++....+.+++..+.+++||++|++.+..++..++++|+++++|||++++.||..+..|...+.+..  
T Consensus        28 f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~  106 (167)
T d1kaoa_          28 FIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY  106 (167)
T ss_dssp             CCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT
T ss_pred             CCCccCCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeeeeeecchhhhhhhhchhhhhhhhccC
Confidence            5678899998 5666788889999999999999999999999999999999999999999999999999999887754  


Q ss_pred             CCCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854           81 ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                      ++.|++|||||+|+.. +.+.. +...+++.++++|++|||++|.||+++|..+++++.
T Consensus       107 ~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~i~~~i~  165 (167)
T d1kaoa_         107 EKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN  165 (167)
T ss_dssp             SCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHHHHHHHc
Confidence            5799999999999975 33443 356888999999999999999999999999999875

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.8e-26  Score=164.76  Aligned_cols=135  Identities=25%  Similarity=0.418  Sum_probs=121.9

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      ++..|.||+|.++... +.+++..+.+.+||++|++.+...+..++++++++++|||++++.+|+.+..|+..+.+..  
T Consensus        28 ~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~  106 (166)
T d1ctqa_          28 FVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS  106 (166)
T ss_dssp             CCCSCCCCSEEEEEEE-EEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTC
T ss_pred             CCCccCCccceeeccc-eeeeceeeeeeeeeccCccccccchhhhhhcccccceeecccccccHHHHHHHHHHHHHhcCC
Confidence            5678999999887654 6678999999999999999999999999999999999999999999999999999988764  


Q ss_pred             CCCCEEEEEeCCCCCCcccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           81 ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      .+.|+++|+||+|+..+.+..+ ..++++.++++|++|||++|.||+++|.++++.+.+
T Consensus       107 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i~~~i~~  165 (166)
T d1ctqa_         107 DDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             SSCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             CCCeEEEEecccccccccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHHHHHHh
Confidence            5789999999999987766654 568999999999999999999999999999998864

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=2.2e-26  Score=165.26  Aligned_cols=137  Identities=27%  Similarity=0.474  Sum_probs=117.8

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...|.||+|.++..+.+.+++..+.+.+|||||++.|..++..++++|+++|+|||.+++.||+.+..|...+.... .
T Consensus        27 ~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  106 (166)
T d1g16a_          27 FNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND  106 (166)
T ss_dssp             CCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCT
T ss_pred             CCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhccccC
Confidence            567889999999999999999999999999999999999999999999999999999999999999999888887765 5


Q ss_pred             CCCEEEEEeCCCCCCcccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           82 NIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      ..|+++++||.|+..+....+ ...++..++++|++|||++|.||+++|.+|++.+.++
T Consensus       107 ~~~~i~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~~i~~k  165 (166)
T d1g16a_         107 EAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK  165 (166)
T ss_dssp             TCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             cceeeeecchhhhhhhhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHHHHHhc
Confidence            788999999999987666555 5578899999999999999999999999999988643

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5e-26  Score=165.16  Aligned_cols=140  Identities=34%  Similarity=0.537  Sum_probs=128.2

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      ++..+.+|.+..+..+.+.+++..+.+.||||+|++++..++..++++++++|+|||++++.+++.+..|+..+.+..  
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~  111 (177)
T d1x3sa1          32 FDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTR  111 (177)
T ss_dssp             CCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSC
T ss_pred             CCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCccccccchhhhhhhcccccc
Confidence            567889999999999999999999999999999999999999999999999999999999999999999999987764  


Q ss_pred             CCCCEEEEEeCCCCCCcccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCCCc
Q 029854           81 ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNL  142 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~  142 (186)
                      ...|+++++||+|...+.+... ...+++.++++|++|||++|.||+++|+++++.+.+.+++
T Consensus       112 ~~~~i~~~~nk~d~~~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~l~~~l~~~p~l  174 (177)
T d1x3sa1         112 NDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGL  174 (177)
T ss_dssp             SCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTSGGG
T ss_pred             cceeeEEEeeccccccccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHHHccCccc
Confidence            4689999999999987777655 5688999999999999999999999999999999988754

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.6e-26  Score=165.41  Aligned_cols=134  Identities=24%  Similarity=0.306  Sum_probs=114.1

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--c
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--C   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~   80 (186)
                      +...|.||+|.+|.. ....++..+.+++|||+|++.+. .+..++++|+++++|||++++.||..+..|...+...  .
T Consensus        27 f~~~~~pTi~~~~~~-~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~  104 (168)
T d2atva1          27 FIWEYDPTLESTYRH-QATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKP  104 (168)
T ss_dssp             CCSCCCTTCCEEEEE-EEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT
T ss_pred             CCCccCCceeccccc-cccccccceEEEEeecccccccc-cchhhhcccccceeecccCCccchhhhhhhcccccccccc
Confidence            567899999998865 44579999999999999998874 5677899999999999999999999999887665443  3


Q ss_pred             CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCC-CchHHHHHHHHHHhC
Q 029854           81 ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNY-NFEKPFLYLARKLAG  138 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~~  138 (186)
                      .+.|+++||||+|+.+ +.+..+ ..+++++++++|++|||++|. ||+++|..|++.+.+
T Consensus       105 ~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l~~~i~~  165 (168)
T d2atva1         105 KNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR  165 (168)
T ss_dssp             SCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHH
T ss_pred             cCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHHHHHHHH
Confidence            6899999999999975 455544 568999999999999999998 599999999988753

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.5e-26  Score=165.76  Aligned_cols=135  Identities=30%  Similarity=0.470  Sum_probs=116.0

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      +...|.||.| +...+.+.+++..+.+.+||++|++.+..++..++++|+++++|||++++.||+.+..|+..+.+..  
T Consensus        30 f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~  108 (171)
T d2erya1          30 FVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDR  108 (171)
T ss_dssp             CCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS
T ss_pred             CCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEEEeeccccccchhhHHHHhHHHHhhccc
Confidence            4678899998 5566788899999999999999999999999999999999999999999999999999999887663  


Q ss_pred             CCCCEEEEEeCCCCCC-cccCh-HHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           81 ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      ...|++|||||+|+.+ +.+.. +...+++.++++|++|||++|.||+++|..|++.+.+
T Consensus       109 ~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~~~i~k  168 (171)
T d2erya1         109 DEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRK  168 (171)
T ss_dssp             SCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHHHHHHHH
Confidence            5789999999999974 44444 4568999999999999999999999999999998753

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.3e-26  Score=164.03  Aligned_cols=137  Identities=33%  Similarity=0.538  Sum_probs=123.0

Q ss_pred             CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-
Q 029854            2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-   80 (186)
Q Consensus         2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-   80 (186)
                      .++..|.||.+..+....+..++..+.+++|||+|++++..+++.++++++++|+|||.+++.+|..+..|+..+.... 
T Consensus        29 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~  108 (174)
T d2bmea1          29 KFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS  108 (174)
T ss_dssp             SCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC
T ss_pred             CCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEEEecccchhHHHHhhhhcccccccC
Confidence            3567899999999999999999999999999999999999999999999999999999999999999999999887765 


Q ss_pred             CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           81 ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      .+.|+++|+||+|+.. ...... ...+++.++++|++|||++|.||+++|.++++.+.+
T Consensus       109 ~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~l~~~i~~  168 (174)
T d2bmea1         109 QNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILN  168 (174)
T ss_dssp             TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHHHHHH
Confidence            6899999999999864 333333 458888999999999999999999999999998864

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1e-25  Score=163.13  Aligned_cols=136  Identities=32%  Similarity=0.543  Sum_probs=119.6

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...|.||++.+.....+.+++..+.+.|||++|+++|..++..++++++++|+|||.+++.||..+..|+..+.+.. +
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~  108 (175)
T d2f9la1          29 FNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS  108 (175)
T ss_dssp             CCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT
T ss_pred             CCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcCC
Confidence            567889999999999999999999999999999999999999999999999999999999999999999999988875 5


Q ss_pred             CCCEEEEEeCCCCCCcc-cChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           82 NIPIVLCGNKVDVKNRQ-VKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~~~-~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      +.|++|||||+|+.+.. ...+ ...+...++.+|++|||++|.||+++|.++++.+.+
T Consensus       109 ~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l~~~i~~  167 (175)
T d2f9la1         109 NIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYR  167 (175)
T ss_dssp             TCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHHHHHHHHH
Confidence            78999999999998543 3333 457778888999999999999999999999998753

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.5e-25  Score=160.12  Aligned_cols=136  Identities=30%  Similarity=0.559  Sum_probs=119.0

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      +...|.+|++..+..+.+.+++..+.+.+||++|+..+...+..++..+++++++||.+++.||+.+..|++.+.+..  
T Consensus        31 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~  110 (174)
T d1wmsa_          31 FDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADV  110 (174)
T ss_dssp             CCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTC
T ss_pred             CCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEEEEEeeecccccchhhhHHHHHHHHhcc
Confidence            466899999999999999999999999999999999999999999999999999999999999999999998887653  


Q ss_pred             ---CCCCEEEEEeCCCCCCcccChH-HHHHHHHc-CCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           81 ---ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        81 ---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                         .+.|+++||||+|+.++.+..+ ..++++++ .++|++|||++|.||+++|++|++.++.
T Consensus       111 ~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~il~  173 (174)
T d1wmsa_         111 KEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA  173 (174)
T ss_dssp             SCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             ccCCCceEEEeccccchhhccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHHHHHHHHHHHhc
Confidence               4689999999999988766665 56788876 4899999999999999999999998864

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.8e-25  Score=161.55  Aligned_cols=136  Identities=32%  Similarity=0.535  Sum_probs=118.3

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-C
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-~   81 (186)
                      +...|.||.+..........++..+.+.+||++|++.+..++..+++++|++|+|||++++.||+.+..|+..+.+.. .
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~  107 (173)
T d2a5ja1          28 FQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSS  107 (173)
T ss_dssp             CCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT
T ss_pred             CCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCCC
Confidence            466788999999999999999999999999999999999999999999999999999999999999999999887764 6


Q ss_pred             CCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           82 NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      +.|++||+||+|+.. +.+..+ ...+++.++++|++|||++|.||+++|.++++.+.+
T Consensus       108 ~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~~~i~~  166 (173)
T d2a5ja1         108 NMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR  166 (173)
T ss_dssp             TCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             CCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence            899999999999875 344443 568899999999999999999999999999998764

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=2.5e-25  Score=161.85  Aligned_cols=135  Identities=19%  Similarity=0.262  Sum_probs=114.3

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHH-HHHHHhhcC
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTW-HRDLCRVCE   81 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~-~~~~~~~~~   81 (186)
                      ++..|.||++. ...+.+.+++..+.+++||++|++.+..++..++++|+++|+|||++++.||+.+..| ...+....+
T Consensus        27 f~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~  105 (179)
T d1m7ba_          27 FPENYVPTVFE-NYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP  105 (179)
T ss_dssp             CCSSCCCCSEE-EEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT
T ss_pred             CCCccCCceee-cccccccccceEEeeccccccccccccccccchhhhhhhhheeeecccCCCHHHHHHHHHHHHhccCC
Confidence            56789999984 5556778899999999999999999999999999999999999999999999998765 455555568


Q ss_pred             CCCEEEEEeCCCCCC-------------cccChH-HHHHHHHcC-CcEEEeccCCCC-CchHHHHHHHHHHhC
Q 029854           82 NIPIVLCGNKVDVKN-------------RQVKAK-QVTFHRKKN-LQYYEISAKSNY-NFEKPFLYLARKLAG  138 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~-------------~~~~~~-~~~~~~~~~-~~~~~~Sa~~~~-gi~~l~~~l~~~i~~  138 (186)
                      +.|+++||||+|+..             +.+..+ ...+++.++ .+|++|||++|. ||+++|+.+++.+.+
T Consensus       106 ~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         106 NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN  178 (179)
T ss_dssp             TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             cceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCCCCcCHHHHHHHHHHHHhc
Confidence            999999999999853             223333 557888876 589999999998 599999999998875

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=3.8e-25  Score=161.30  Aligned_cols=138  Identities=36%  Similarity=0.607  Sum_probs=122.4

Q ss_pred             CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-
Q 029854            2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-   80 (186)
Q Consensus         2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-   80 (186)
                      .++..|.||+|.++..+.+...+..+.+.+|||+|+..+..++..++..|+++++|||.++..+|..+..|++.+.... 
T Consensus        26 ~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~  105 (184)
T d1vg8a_          26 KFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQAS  105 (184)
T ss_dssp             CCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC
T ss_pred             CCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEeecccchhhhhcchhhHHHHHHHhc
Confidence            3577899999999999999999999999999999999999999999999999999999999999999999998887653 


Q ss_pred             ----CCCCEEEEEeCCCCCCcccChH-HHHHHH-HcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           81 ----ENIPIVLCGNKVDVKNRQVKAK-QVTFHR-KKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        81 ----~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                          .+.|+++||||+|+.++.+..+ ..+++. .++++|++|||++|.||+++|.+|++.+.++
T Consensus       106 ~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~i~~~  170 (184)
T d1vg8a_         106 PRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ  170 (184)
T ss_dssp             CSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             cccccCCCEEEEEEeecccccchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHHHHHHHHHHhc
Confidence                3689999999999987666655 345554 4578999999999999999999999887654

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.1e-25  Score=162.77  Aligned_cols=131  Identities=21%  Similarity=0.318  Sum_probs=111.3

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCC---CccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTA---GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--   80 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~---G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--   80 (186)
                      .+.||+|.+++.+.+.+++..+.+.+||++   |+++|  ++..+++++|++|+|||++++.||+.+..|...+....  
T Consensus        32 ~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~  109 (172)
T d2g3ya1          32 SDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT  109 (172)
T ss_dssp             CC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGG
T ss_pred             ccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccceeeeeecccccchhhhhhhhhhhhhhcccc
Confidence            456889999999999999999999999965   56655  56778999999999999999999999999999887653  


Q ss_pred             CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           81 ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      ++.|++|||||+|+.+ +.+..+ ..+++..++++|++|||++|.||+++|..|++.+..
T Consensus       110 ~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~f~~l~~~i~~  169 (172)
T d2g3ya1         110 EDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRL  169 (172)
T ss_dssp             TTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHHHHHHHHHHHH
Confidence            6899999999999975 445444 567889999999999999999999999999998854

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=8.6e-26  Score=164.97  Aligned_cols=136  Identities=30%  Similarity=0.473  Sum_probs=118.9

Q ss_pred             CCccccccceEEEEEEEEEECC----------eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHH
Q 029854            3 VSVWGKATIGVEVHPLDFFTNC----------GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTW   72 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~----------~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~   72 (186)
                      +...|.||.+.++..+.+.+++          ..+.+.+|||+|++.|..++..++++|+++|+|||++++.+|+.+..|
T Consensus        30 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~  109 (186)
T d2f7sa1          30 FNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNW  109 (186)
T ss_dssp             CCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHH
T ss_pred             CCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHHHHhcCCEEEEEEeccccccceeeeec
Confidence            4567899999999888877644          358899999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhc--CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           73 HRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        73 ~~~~~~~~--~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      +..+....  ...|++||+||+|+.+ +.+..+ ..+++++++++|++|||++|.||+++|++|++.+.+
T Consensus       110 ~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~~~i~~  179 (186)
T d2f7sa1         110 MSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMK  179 (186)
T ss_dssp             HHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred             cchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            98876653  5688999999999975 445544 568999999999999999999999999999998864

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.1e-24  Score=157.33  Aligned_cols=137  Identities=28%  Similarity=0.484  Sum_probs=104.0

Q ss_pred             CCccccccceEEEEEEEEEE-CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc-
Q 029854            3 VSVWGKATIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~-   80 (186)
                      +...|.||.|.......... +...+.+.+|||+|++++..++..+++.++++++|||++++.||+.+..|+..+.... 
T Consensus        27 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~  106 (175)
T d1ky3a_          27 YSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHAN  106 (175)
T ss_dssp             CCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHC
T ss_pred             CCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEEEeecccccccchhhhcchhhhhhhh
Confidence            45678899998887777665 4555889999999999999999999999999999999999999999999999987653 


Q ss_pred             ----CCCCEEEEEeCCCCCCc--ccChH-HHHHHHHcC-CcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           81 ----ENIPIVLCGNKVDVKNR--QVKAK-QVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        81 ----~~~p~ilv~nK~Dl~~~--~~~~~-~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                          .+.|++||+||+|+.+.  .+..+ ..++++.++ ++|++|||++|.||+++|.+|++.+.++
T Consensus       107 ~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~f~~l~~~~l~~  173 (175)
T d1ky3a_         107 VNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ  173 (175)
T ss_dssp             CSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             hcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHHhc
Confidence                46899999999999752  24433 557888875 7899999999999999999999988653

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=5.7e-24  Score=152.20  Aligned_cols=132  Identities=29%  Similarity=0.514  Sum_probs=115.3

Q ss_pred             CCCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCC-ccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc
Q 029854            2 NVSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC   80 (186)
Q Consensus         2 ~~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~-~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~   80 (186)
                      .+...+.||++..+..+...+.+....+.+||++|...+.. .++.+++++|++|+|||++++.||+.+..|+..+.+..
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~  105 (165)
T d1z06a1          26 RFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHL  105 (165)
T ss_dssp             SCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHC
T ss_pred             CCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhc
Confidence            35678999999999999999999999999999999877754 56789999999999999999999999999999988764


Q ss_pred             --CCCCEEEEEeCCCCCC-cccChH-HHHHHHHcCCcEEEeccCCC---CCchHHHHHHH
Q 029854           81 --ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSN---YNFEKPFLYLA  133 (186)
Q Consensus        81 --~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~Sa~~~---~gi~~l~~~l~  133 (186)
                        .+.|++|||||+|+.+ +.+..+ ..++++.++++|++|||++|   .||+++|.+|+
T Consensus       106 ~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~F~~lA  165 (165)
T d1z06a1         106 LANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA  165 (165)
T ss_dssp             CCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC
T ss_pred             cCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHHHHHhC
Confidence              5799999999999975 455555 56899999999999999974   59999998874

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.4e-23  Score=149.46  Aligned_cols=128  Identities=16%  Similarity=0.234  Sum_probs=106.0

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc----C
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC----E   81 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~----~   81 (186)
                      .+.||.+..+ .+.+.+++..+.+.+|||+|+.++     .++++||++|+|||++++.||+.+..|+..+....    .
T Consensus        32 ~~~~t~~~~~-~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~  105 (175)
T d2bmja1          32 VLEKTESEQY-KKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRG  105 (175)
T ss_dssp             CCCCSSCEEE-EEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CC
T ss_pred             CcCCccceeE-EEEeecCceEEEEEEeeccccccc-----ccccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccC
Confidence            4667877665 578889999999999999998765     47899999999999999999999999998887653    4


Q ss_pred             CCCEEEEEeCCCCCC---cccChH-HHHHHHH-cCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           82 NIPIVLCGNKVDVKN---RQVKAK-QVTFHRK-KNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        82 ~~p~ilv~nK~Dl~~---~~~~~~-~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      +.|+++|+||.|+..   +.+... ...++.. ++++|++|||++|.||+++|..+++.+...
T Consensus       106 ~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~  168 (175)
T d2bmja1         106 GLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTL  168 (175)
T ss_dssp             CCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             CccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHHHHHHHHHHHHHh
Confidence            679999999999853   344443 4567554 468999999999999999999999988653

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.89  E-value=1.5e-23  Score=149.99  Aligned_cols=130  Identities=18%  Similarity=0.316  Sum_probs=105.8

Q ss_pred             CCccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--c
Q 029854            3 VSVWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--C   80 (186)
Q Consensus         3 ~~~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~   80 (186)
                      +...+.||+|.++.....    ..+.+.+||+||++.+...+..++.+++++++|||++++.+|..+..|+..+.+.  .
T Consensus        27 ~~~~~~~T~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~  102 (164)
T d1zd9a1          27 FNEDMIPTVGFNMRKITK----GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQL  102 (164)
T ss_dssp             CCCSCCCCCSEEEEEEEE----TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGG
T ss_pred             CCCcccccceeeeeeeee----eeEEEEEeeccccccccccccccccccchhhcccccccccccchhhhhhhhhhhhhcc
Confidence            456789999988875443    5688999999999999999999999999999999999999999998888877654  3


Q ss_pred             CCCCEEEEEeCCCCCCcccChHHH-----HHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029854           81 ENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      ++.|++||+||+|+.+.....+..     .++...+++++++||++|.||+++|++|++++
T Consensus       103 ~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~~~~  163 (164)
T d1zd9a1         103 QGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS  163 (164)
T ss_dssp             TTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred             cCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHHHHHHcc
Confidence            689999999999997543322222     11223356799999999999999999998754

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.89  E-value=7.9e-23  Score=146.13  Aligned_cols=130  Identities=15%  Similarity=0.188  Sum_probs=102.6

Q ss_pred             ccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCC
Q 029854            5 VWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CEN   82 (186)
Q Consensus         5 ~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~   82 (186)
                      ..+.||+|.......    ...+.+.+|||+|++.++..+..++++++++++|||+++..++.....|+......  ..+
T Consensus        28 ~~~~~t~~~~~~~~~----~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~  103 (165)
T d1ksha_          28 DTISPTLGFNIKTLE----HRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAG  103 (165)
T ss_dssp             SSCCCCSSEEEEEEE----ETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTT
T ss_pred             CcccceEeeeeeecc----ccccceeeeecCcchhhhhHHHhhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCC
Confidence            457899997766433    35688999999999999999999999999999999999999999887666555432  368


Q ss_pred             CCEEEEEeCCCCCCcccChHHHHH-----HHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           83 IPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        83 ~p~ilv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      .|++||+||+|+.+.....+....     ....++++++|||++|.||+++|++|++++..
T Consensus       104 ~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~i~~  164 (165)
T d1ksha_         104 ATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS  164 (165)
T ss_dssp             CEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             CceEEEEeccccccccCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHHHHHHHHHHc
Confidence            999999999999864433332221     12224579999999999999999999998864

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.88  E-value=3.9e-23  Score=150.14  Aligned_cols=129  Identities=16%  Similarity=0.225  Sum_probs=99.8

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCC
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENI   83 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~   83 (186)
                      .+.||.|..+.....    ..+.+.+||++|++.+..++..++++++++++|||+++..++.....|+..+.+..  .+.
T Consensus        44 ~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~  119 (182)
T d1moza_          44 TTKPTIGFNVETLSY----KNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDA  119 (182)
T ss_dssp             EECSSTTCCEEEEEE----TTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSC
T ss_pred             ccccccceEEEEEee----CCEEEEEEecccccccchhHHhhhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCc
Confidence            466898877765443    56889999999999999999999999999999999999999999888887765532  579


Q ss_pred             CEEEEEeCCCCCCcccChHHHH-----HHHHcCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           84 PIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        84 p~ilv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      |++||+||+|+.+.....+..+     .+...++++++|||++|.||+++|++|++.+.+
T Consensus       120 piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~~~~l~~~i~~  179 (182)
T d1moza_         120 ALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE  179 (182)
T ss_dssp             EEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred             ceEEEEEeeccccccCHHHHHHHHHHHHHhhCCCEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            9999999999975432222221     123334679999999999999999999988754

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.87  E-value=1.2e-22  Score=146.54  Aligned_cols=127  Identities=16%  Similarity=0.263  Sum_probs=100.4

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCC
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENI   83 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~   83 (186)
                      .+.||+|+++....    ...+.+.+||++|++.+...+..+++.++++|+|||+++..++.++..|+..+....  .+.
T Consensus        43 ~~~~~~~~~~~~i~----~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~  118 (176)
T d1fzqa_          43 HITPTQGFNIKSVQ----SQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCV  118 (176)
T ss_dssp             EEEEETTEEEEEEE----ETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTC
T ss_pred             cceeeeeeeEEEec----cCCeeEeEeeccccccchhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhccCCC
Confidence            45678887765433    256889999999999999999999999999999999999999999988877765543  579


Q ss_pred             CEEEEEeCCCCCCcccChHHHH-----HHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029854           84 PIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        84 p~ilv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      |++|++||+|+.+........+     .++...+++++|||++|.||+++|++|++.+
T Consensus       119 pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~e~~~~l~~~i  176 (176)
T d1fzqa_         119 PVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV  176 (176)
T ss_dssp             CEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred             eEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHhcC
Confidence            9999999999975433222221     1122345799999999999999999998753

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.87  E-value=2.4e-22  Score=144.91  Aligned_cols=128  Identities=21%  Similarity=0.287  Sum_probs=102.2

Q ss_pred             ccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCC
Q 029854            5 VWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CEN   82 (186)
Q Consensus         5 ~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~   82 (186)
                      ....||.|+.+.....    ..+.+.+||+||++.++..+..++++++++|+|||+++..++..+..|+....+.  ..+
T Consensus        38 ~~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~  113 (173)
T d1e0sa_          38 VTTIPTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD  113 (173)
T ss_dssp             EEEEEETTEEEEEEEE----TTEEEEEEEESCCGGGHHHHGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTT
T ss_pred             CCccceeeeeEEEeec----cceeeEEecCCCcchhhhHHHhhhcccceEEEEEecccchhHHHHHHHHHHHhhhccccc
Confidence            4566888877654433    5689999999999999999999999999999999999999999998887776553  368


Q ss_pred             CCEEEEEeCCCCCCcccChHHH-----HHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029854           83 IPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        83 ~p~ilv~nK~Dl~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      .|+++++||+|+.+.....+..     ..+...++.+++|||++|+||+++|++|..++
T Consensus       114 ~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~~~~l~~~~  172 (173)
T d1e0sa_         114 AIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY  172 (173)
T ss_dssp             CEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             ceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHHhc
Confidence            9999999999997643332222     11223356799999999999999999998764

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.76  E-value=5.9e-19  Score=124.30  Aligned_cols=116  Identities=21%  Similarity=0.247  Sum_probs=96.0

Q ss_pred             EECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCCCEEEEEeCCCCCCcc
Q 029854           21 FTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ   98 (186)
Q Consensus        21 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~   98 (186)
                      ..+...+.+.+||++|...+...+..+++.+++++++||.+++.++..+..|...+....  ...|+++++||+|+.+..
T Consensus        38 ~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~  117 (160)
T d1r8sa_          38 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM  117 (160)
T ss_dssp             EEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred             EEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccc
Confidence            446678999999999999999999999999999999999999999999888877776543  578999999999998644


Q ss_pred             cChHHH-----HHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029854           99 VKAKQV-----TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        99 ~~~~~~-----~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      ...+..     .+++..++++++|||++|.||+++|++|++++
T Consensus       118 ~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l~~~l  160 (160)
T d1r8sa_         118 NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL  160 (160)
T ss_dssp             CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHHHHhcC
Confidence            333322     23334467899999999999999999999764

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=5.8e-19  Score=128.81  Aligned_cols=130  Identities=15%  Similarity=0.109  Sum_probs=98.2

Q ss_pred             ccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChh-----------hHHhHHHHH
Q 029854            5 VWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-----------TYKNVPTWH   73 (186)
Q Consensus         5 ~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~-----------s~~~i~~~~   73 (186)
                      ..|.||+|+++...    ....+.+++||++|++.++..|..+++++++++++||.++..           .++....|.
T Consensus        27 ~~~~pTiG~~~~~~----~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  102 (200)
T d2bcjq2          27 GSGVPTTGIIEYPF----DLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFR  102 (200)
T ss_dssp             SSCCCCCSCEEEEE----ECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHH
T ss_pred             CCCCceeeEEEEEE----eccceeeeeccccccccccccccccccccceeeEeeeccchhhhhhhhccccchHHHHHHHH
Confidence            46899999987643    347788999999999999999999999999999999998864           345566677


Q ss_pred             HHHHhhc-CCCCEEEEEeCCCCCCccc-----------------ChH-HHHHH----HH------cCCcEEEeccCCCCC
Q 029854           74 RDLCRVC-ENIPIVLCGNKVDVKNRQV-----------------KAK-QVTFH----RK------KNLQYYEISAKSNYN  124 (186)
Q Consensus        74 ~~~~~~~-~~~p~ilv~nK~Dl~~~~~-----------------~~~-~~~~~----~~------~~~~~~~~Sa~~~~g  124 (186)
                      ..+.... .+.|+++++||+|+.....                 ... ...+.    ..      ..+.++++||++|.|
T Consensus       103 ~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~n  182 (200)
T d2bcjq2         103 TIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTEN  182 (200)
T ss_dssp             HHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHH
T ss_pred             HHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHh
Confidence            7776553 6899999999999742110                 010 11111    11      123478999999999


Q ss_pred             chHHHHHHHHHHhC
Q 029854          125 FEKPFLYLARKLAG  138 (186)
Q Consensus       125 i~~l~~~l~~~i~~  138 (186)
                      |+++|+.+.+.|.+
T Consensus       183 i~~vF~~i~~~I~~  196 (200)
T d2bcjq2         183 IRFVFAAVKDTILQ  196 (200)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999888764

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.72  E-value=6e-19  Score=128.22  Aligned_cols=129  Identities=13%  Similarity=0.063  Sum_probs=92.5

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHh-----------HHHHHH
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN-----------VPTWHR   74 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~-----------i~~~~~   74 (186)
                      .+.||+|+...    .++...+.+++|||+|+++|+.+|..++++++++++|+|.++..+|..           ...|..
T Consensus        25 ~~~~t~~~~~~----~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~  100 (195)
T d1svsa1          25 IHEAGTGIVET----HFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDS  100 (195)
T ss_dssp             HHSCCCSEEEE----EEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHH
T ss_pred             CCCCCccEEEE----EEEeeeeeeeeeccccccccccchhhcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHH
Confidence            35678886433    344577899999999999999999999999999999999999887632           233444


Q ss_pred             HHHhh-cCCCCEEEEEeCCCCCCcc----------------cC-hHHH-----HHHHH------cCCcEEEeccCCCCCc
Q 029854           75 DLCRV-CENIPIVLCGNKVDVKNRQ----------------VK-AKQV-----TFHRK------KNLQYYEISAKSNYNF  125 (186)
Q Consensus        75 ~~~~~-~~~~p~ilv~nK~Dl~~~~----------------~~-~~~~-----~~~~~------~~~~~~~~Sa~~~~gi  125 (186)
                      .+... ..+.|+++++||+|+....                .. .+..     .+...      .++.++++||++|.||
T Consensus       101 i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv  180 (195)
T d1svsa1         101 ICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNV  180 (195)
T ss_dssp             HHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHH
T ss_pred             HhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhH
Confidence            44433 3678999999999963210                00 0110     11111      1235779999999999


Q ss_pred             hHHHHHHHHHHhC
Q 029854          126 EKPFLYLARKLAG  138 (186)
Q Consensus       126 ~~l~~~l~~~i~~  138 (186)
                      +++|+.+.+.|.+
T Consensus       181 ~~~F~~v~~~il~  193 (195)
T d1svsa1         181 QFVFDAVTDVIIK  193 (195)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999887764

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.68  E-value=9e-17  Score=115.05  Aligned_cols=126  Identities=21%  Similarity=0.302  Sum_probs=91.4

Q ss_pred             ccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCCCC
Q 029854            7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIP   84 (186)
Q Consensus         7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~~p   84 (186)
                      ..+|.+........    ..+.+.+||++|++.+...+..++..++++++++|.++..++.....+.......  ..+.|
T Consensus        43 ~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p  118 (177)
T d1zj6a1          43 TSPTIGSNVEEIVI----NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG  118 (177)
T ss_dssp             EECCSCSSCEEEEE----TTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCE
T ss_pred             cccccceeEEEEee----cceEEEEeccccccccccchhhhhccceeeeeecccccccchhhhhhhhhhhhhcccccceE
Confidence            34555543333222    4578899999999999999999999999999999999999998776555444333  26899


Q ss_pred             EEEEEeCCCCCCcccChHHHHHH-----HHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029854           85 IVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        85 ~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      +++|+||+|++......+.....     ...++++++|||++|.||+++|++|++++
T Consensus       119 ~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         119 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL  175 (177)
T ss_dssp             EEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             EEEEEEcccccccCcHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            99999999997644333322211     22346799999999999999999999886

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=6e-17  Score=118.16  Aligned_cols=130  Identities=15%  Similarity=0.080  Sum_probs=87.6

Q ss_pred             ccccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhh----------HHhHHHHHH
Q 029854            5 VWGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT----------YKNVPTWHR   74 (186)
Q Consensus         5 ~~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s----------~~~i~~~~~   74 (186)
                      ..+.||+|+++.....    ..+.+++||++|++.++..+..+++++++++++||.++..+          ++....|+.
T Consensus        26 ~~~~pTiG~~~~~~~~----~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (200)
T d1zcba2          26 HGQDPTKGIHEYDFEI----KNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFE  101 (200)
T ss_dssp             HSCCCCSSEEEEEEEE----TTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHH
T ss_pred             CCCCCeeeeEEEEEee----eeeeeeeecccceeeecccccccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHH
Confidence            4689999987764433    67889999999999999999999999999999999998654          334444555


Q ss_pred             HHHhh--cCCCCEEEEEeCCCCCCccc-----------------C-hHHHHHHH----Hc-------CCcEEEeccCCCC
Q 029854           75 DLCRV--CENIPIVLCGNKVDVKNRQV-----------------K-AKQVTFHR----KK-------NLQYYEISAKSNY  123 (186)
Q Consensus        75 ~~~~~--~~~~p~ilv~nK~Dl~~~~~-----------------~-~~~~~~~~----~~-------~~~~~~~Sa~~~~  123 (186)
                      .+.+.  ..+.|++|++||+|+.+...                 . ....++..    ..       .+.++++||+++.
T Consensus       102 ~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~  181 (200)
T d1zcba2         102 TIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTE  181 (200)
T ss_dssp             HHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHH
T ss_pred             HHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcH
Confidence            55433  26899999999999743110                 0 11111111    11       2346789999999


Q ss_pred             CchHHHHHHHHHHhC
Q 029854          124 NFEKPFLYLARKLAG  138 (186)
Q Consensus       124 gi~~l~~~l~~~i~~  138 (186)
                      ||+++|+.+.+.|.+
T Consensus       182 ni~~vf~~v~d~i~~  196 (200)
T d1zcba2         182 NIRLVFRDVKDTILH  196 (200)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999998877654

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.68  E-value=7.4e-17  Score=116.12  Aligned_cols=115  Identities=18%  Similarity=0.176  Sum_probs=82.7

Q ss_pred             eEEEEEEEeCCCccccCCcc--------ccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCC
Q 029854           25 GKIRFYCWDTAGQEKFGGLR--------DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN   96 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~~~~--------~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~   96 (186)
                      ....+.+|||||.......+        ..++++||++|+|+|++++.+... ..|.+.++....+.|+++|+||+|+..
T Consensus        51 ~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~~~~~piilv~NK~Dl~~  129 (178)
T d1wf3a1          51 GRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED-ELVARALKPLVGKVPILLVGNKLDAAK  129 (178)
T ss_dssp             TTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGGTTTSCEEEEEECGGGCS
T ss_pred             eeeeeeecccccccccccccchhcccccccccccccceeeeechhhhhcccc-cchhhheeccccchhhhhhhccccccc
Confidence            34578899999986554333        334678999999999998655432 345555655556899999999999865


Q ss_pred             cccChHHH-HHHHHcC-CcEEEeccCCCCCchHHHHHHHHHHhCCCCc
Q 029854           97 RQVKAKQV-TFHRKKN-LQYYEISAKSNYNFEKPFLYLARKLAGDPNL  142 (186)
Q Consensus        97 ~~~~~~~~-~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~  142 (186)
                      ..  .+.. .+....+ ..++++||++|.||+++++.+++.+.+.+..
T Consensus       130 ~~--~~~~~~~~~~~~~~~~~~iSA~~~~gi~~L~~~i~~~lpe~p~~  175 (178)
T d1wf3a1         130 YP--EEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALMPEGPFF  175 (178)
T ss_dssp             SH--HHHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTCCBCCCS
T ss_pred             CH--HHHHHHHHhhcccCceEEEecCCCCCHHHHHHHHHHhCCCCCCC
Confidence            32  2222 3333333 5789999999999999999999888765544

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=5e-16  Score=109.04  Aligned_cols=125  Identities=18%  Similarity=0.292  Sum_probs=97.0

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc--CCC
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENI   83 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~--~~~   83 (186)
                      .+.||+|......    ....+.+.+||++|...+...+..+++.++++++++|.++..++.....|........  .+.
T Consensus        27 ~~~~t~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (166)
T d2qtvb1          27 TLQPTWHPTSEEL----AIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDV  102 (166)
T ss_dssp             CCCCCCSCEEEEE----CCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTC
T ss_pred             eeeceeeEeEEEe----ccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccccchhhhhhhhHHHHhhhhhhccCCc
Confidence            5788998777643    3356778899999999999999999999999999999999999888777766665543  578


Q ss_pred             CEEEEEeCCCCCCcccChHHHHHH------------HHcCCcEEEeccCCCCCchHHHHHHHH
Q 029854           84 PIVLCGNKVDVKNRQVKAKQVTFH------------RKKNLQYYEISAKSNYNFEKPFLYLAR  134 (186)
Q Consensus        84 p~ilv~nK~Dl~~~~~~~~~~~~~------------~~~~~~~~~~Sa~~~~gi~~l~~~l~~  134 (186)
                      |+++++||.|+.......+..+..            ....+++++|||++|+||+++|++|.+
T Consensus       103 ~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         103 PFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             CEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSHHHHHHHHTT
T ss_pred             eEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCHHHHHHHHhC
Confidence            999999999997533222221111            111246999999999999999999864

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.64  E-value=1.9e-15  Score=106.60  Aligned_cols=130  Identities=17%  Similarity=0.272  Sum_probs=100.5

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhh--cCCC
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENI   83 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~--~~~~   83 (186)
                      ...||.|..+.....    ..+.+.+||++|...+...+..++..++++++++|+++..++.....+.......  ....
T Consensus        32 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (169)
T d1upta_          32 TTIPTIGFNVETVTY----KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKA  107 (169)
T ss_dssp             CCCCCSSEEEEEEEE----TTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTC
T ss_pred             ceecccceeeeeecc----CceEEEEeeccccccccccchhhhhhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccc
Confidence            456777765553332    5678889999999999999999999999999999999988888776655444433  3678


Q ss_pred             CEEEEEeCCCCCCcccChHHH-----HHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854           84 PIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        84 p~ilv~nK~Dl~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                      |+++++||+|+.+.....+..     .++...+++|++|||++|.||+++|++|++.+.++
T Consensus       108 ~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~~l~~~l~~k  168 (169)
T d1upta_         108 ILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR  168 (169)
T ss_dssp             EEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             eEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            999999999998654433322     22334457899999999999999999999988653

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.62  E-value=1.7e-15  Score=108.92  Aligned_cols=116  Identities=16%  Similarity=0.086  Sum_probs=81.7

Q ss_pred             eEEEEEEEeCCCccccC----Ccc---ccccccCcEEEEEEeCCChh--hHHhHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 029854           25 GKIRFYCWDTAGQEKFG----GLR---DGYYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVCENIPIVLCGNKVDVK   95 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~----~~~---~~~~~~ad~vilv~D~~~~~--s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~   95 (186)
                      ....+++|||||.....    .+.   ...+..++++++++|.....  ++.....|+........+.|+++|+||+|+.
T Consensus        47 ~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~  126 (180)
T d1udxa2          47 EEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLL  126 (180)
T ss_dssp             SSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTS
T ss_pred             CCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhh
Confidence            44567899999954321    121   23456899999999987642  3333334444333333468999999999998


Q ss_pred             CcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029854           96 NRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                      ++.......+.....+.+++.+||++|.||+++++.|.+.+...+
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~iSA~tg~gid~L~~~i~~~l~~~~  171 (180)
T d1udxa2         127 EEEAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRSTP  171 (180)
T ss_dssp             CHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHTSC
T ss_pred             hHHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence            655444444555667889999999999999999999999887654

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.57  E-value=9.4e-15  Score=104.52  Aligned_cols=127  Identities=15%  Similarity=0.211  Sum_probs=89.1

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHh-h-cCCC
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-V-CENI   83 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~-~-~~~~   83 (186)
                      .+.||.+.......  ++  ...+.+||+.|+..+...+..+++.++++++++|.++...+.....+...... . ..+.
T Consensus        40 ~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~  115 (186)
T d1f6ba_          40 QHVPTLHPTSEELT--IA--GMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANV  115 (186)
T ss_dssp             ---CCCCCSCEEEE--ET--TEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTS
T ss_pred             ceecccccceeEEE--ec--ccccccccccchhhhhhHHhhhhcccceeeeeeeccCccchHHHHHHHHHhhcccccCCC
Confidence            34577776655433  33  35678999999999999999999999999999999999888876654444333 2 3689


Q ss_pred             CEEEEEeCCCCCCcccChHHHHHHH-----------------HcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029854           84 PIVLCGNKVDVKNRQVKAKQVTFHR-----------------KKNLQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        84 p~ilv~nK~Dl~~~~~~~~~~~~~~-----------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      |+++++||+|++.........+...                 ..++++++|||++|+||+|+|++|++++
T Consensus       116 ~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         116 PILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             CEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             ceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEEEEEeCCCCCCHHHHHHHHHHhh
Confidence            9999999999876433222222221                 1124689999999999999999998765

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=2.2e-15  Score=106.22  Aligned_cols=121  Identities=16%  Similarity=0.157  Sum_probs=86.7

Q ss_pred             ccceEEEEEEEEEECCeEEEEEEEeCCCccccCCc--------cccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhc
Q 029854            9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC   80 (186)
Q Consensus         9 ~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~--------~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~   80 (186)
                      |+...+.....+...+  ..+.+||++|.......        ...++.++|++++++|.++..++.....|...+....
T Consensus        33 ~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~  110 (161)
T d2gj8a1          33 AGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLP  110 (161)
T ss_dssp             TTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSC
T ss_pred             cccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHHHhccccceeeccccccchhhhhhhhhhhhhcc
Confidence            3333333333444444  46778999997654332        3345788999999999999888777777766666666


Q ss_pred             CCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHH
Q 029854           81 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      .+.|+++|+||+|+.+.....     ....+.+++++||++|.||++++++|++.+
T Consensus       111 ~~~~iilv~NK~Dl~~~~~~~-----~~~~~~~~~~iSAk~~~gi~~L~~~l~~~l  161 (161)
T d2gj8a1         111 AKLPITVVRNKADITGETLGM-----SEVNGHALIRLSARTGEGVDVLRNHLKQSM  161 (161)
T ss_dssp             TTCCEEEEEECHHHHCCCCEE-----EEETTEEEEECCTTTCTTHHHHHHHHHHHC
T ss_pred             cccceeeccchhhhhhhHHHH-----HHhCCCcEEEEECCCCCCHHHHHHHHHhhC
Confidence            789999999999986432211     112356899999999999999999998764

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.53  E-value=7.8e-15  Score=109.14  Aligned_cols=129  Identities=16%  Similarity=0.121  Sum_probs=89.1

Q ss_pred             cccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhh----------HHhHHHHHHH
Q 029854            6 WGKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT----------YKNVPTWHRD   75 (186)
Q Consensus         6 ~~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s----------~~~i~~~~~~   75 (186)
                      ++.||+|++.....+    +.+.+++||++|++.++..|..++.+++++++|+|.++.+.          ..+...++..
T Consensus        30 ~~~pTiG~~~~~~~~----~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~  105 (221)
T d1azta2          30 HVVLTSGIFETKFQV----DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKS  105 (221)
T ss_dssp             HCCCCCSCEEEEEEE----TTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHH
T ss_pred             CcCCCCCeEEEEEEE----CcEEEEEEecCccceeccchhhhcccccceEEEEEccccccccccccchHHHHHHHHHHHH
Confidence            467999977654333    45789999999999999999999999999999999987543          2222222333


Q ss_pred             HHhh--cCCCCEEEEEeCCCCCCccc-----C---------------------------hHHH-----HHHHHcC-----
Q 029854           76 LCRV--CENIPIVLCGNKVDVKNRQV-----K---------------------------AKQV-----TFHRKKN-----  111 (186)
Q Consensus        76 ~~~~--~~~~p~ilv~nK~Dl~~~~~-----~---------------------------~~~~-----~~~~~~~-----  111 (186)
                      +.+.  ..+.|++|++||+|+.+..+     .                           ....     ++...+.     
T Consensus       106 il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~  185 (221)
T d1azta2         106 IWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDG  185 (221)
T ss_dssp             HHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCCTTCCHHHHHHHHHHHHHHHHHHTSSCTT
T ss_pred             HhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccccCCCchhHHHHHHHHHHHHHHHhccCCCC
Confidence            3332  26799999999999853110     0                           0011     1211111     


Q ss_pred             ---CcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854          112 ---LQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus       112 ---~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                         +-.+++||.++.||+.+|..+.+.|.+
T Consensus       186 ~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~  215 (221)
T d1azta2         186 RHYCYPHFTCAVDTENIRRVFNDCRDIIQR  215 (221)
T ss_dssp             SCCEEEEECCTTCHHHHHHHHHTTHHHHHH
T ss_pred             CCceeeeecceeccHHHHHHHHHHHHHHHH
Confidence               224689999999999999988776654

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.48  E-value=1.3e-14  Score=103.47  Aligned_cols=115  Identities=14%  Similarity=0.078  Sum_probs=79.1

Q ss_pred             CCeEEEEEEEeCCCccccC---------CccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCC
Q 029854           23 NCGKIRFYCWDTAGQEKFG---------GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD   93 (186)
Q Consensus        23 ~~~~~~l~l~Dt~G~~~~~---------~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~D   93 (186)
                      +.....+.+||++|.....         .....++..||+++++.|.+....... ..|+..+...  +.|+++|+||+|
T Consensus        44 ~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ad~i~~~~~~~~~~~~~~-~~~~~~l~~~--~~pviiv~NK~D  120 (171)
T d1mkya1          44 EWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED-ESLADFLRKS--TVDTILVANKAE  120 (171)
T ss_dssp             EETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH-HHHHHHHHHH--TCCEEEEEESCC
T ss_pred             cccccccccccccceeeeeccccccccccccccccccCcEEEEeecccccccccc-cccccccccc--cccccccchhhh
Confidence            4455678899999954322         122344678999999999987654432 3455555543  689999999999


Q ss_pred             CCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHHHhCCC
Q 029854           94 VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP  140 (186)
Q Consensus        94 l~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  140 (186)
                      +..........++.+....+++++||++|.||++++++|.+.+.+..
T Consensus       121 l~~~~~~~~~~~~~~~~~~~~i~iSAk~g~gid~L~~~i~~~l~e~~  167 (171)
T d1mkya1         121 NLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEKG  167 (171)
T ss_dssp             SHHHHHHHTHHHHGGGSSCSCEECBTTTTBSHHHHHHHHHHHHHHTT
T ss_pred             hhhhhhhHHHHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHhCCCCC
Confidence            86432111122333333457899999999999999999999987654

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.47  E-value=2e-14  Score=103.48  Aligned_cols=112  Identities=17%  Similarity=0.100  Sum_probs=81.6

Q ss_pred             eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHH-
Q 029854           25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-  103 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~-  103 (186)
                      ....+.++|++|+..|...+...+..+|++++|+|+++....+... .+..+..  .+.|+++|+||+|+.+....... 
T Consensus        57 ~~~~~~~~d~~g~~~~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~-~~~~~~~--~~~p~iiv~NKiD~~~~~~~~~~~  133 (179)
T d1wb1a4          57 ENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGE-HMLILDH--FNIPIIVVITKSDNAGTEEIKRTE  133 (179)
T ss_dssp             TTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHH-HHHHHHH--TTCCBCEEEECTTSSCHHHHHHHH
T ss_pred             CCccccccccccccccccchhhhhhhccccccccccccccchhhhh-hhhhhhh--cCCcceeccccccccCHHHHHHHH
Confidence            3456778999999999888888899999999999999864433222 2222222  37899999999999764322111 


Q ss_pred             ---HHHHHH-c---CCcEEEeccCCCCCchHHHHHHHHHHhCC
Q 029854          104 ---VTFHRK-K---NLQYYEISAKSNYNFEKPFLYLARKLAGD  139 (186)
Q Consensus       104 ---~~~~~~-~---~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  139 (186)
                         ..+... +   +.+++++||++|.|++++++.+.+.+.+.
T Consensus       134 ~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~eL~~~I~~~l~~~  176 (179)
T d1wb1a4         134 MIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNNA  176 (179)
T ss_dssp             HHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhhcCCCCeEEEEEccCCcCHHHHHHHHHhcCCcc
Confidence               122222 1   35799999999999999999999888654

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.45  E-value=1.6e-13  Score=102.37  Aligned_cols=111  Identities=19%  Similarity=0.173  Sum_probs=77.8

Q ss_pred             eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccCh---
Q 029854           25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---  101 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~---  101 (186)
                      ...++.|+||||+..|...+...+..||++|+|+|+.+.-..+. ...+..+..  .+.|+|+++||+|+.+.....   
T Consensus        68 ~~~~~~~iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~--~~~p~iivlNK~D~~~~~~~~~~~  144 (227)
T d1g7sa4          68 TLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQT-QEALNILRM--YRTPFVVAANKIDRIHGWRVHEGR  144 (227)
T ss_dssp             TCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHHH--TTCCEEEEEECGGGSTTCCCCTTC
T ss_pred             cccccccccccceecccccchhcccccceEEEEEecccCcccch-hHHHHHhhc--CCCeEEEEEECccCCCchhhhhhH
Confidence            44567889999999999988889999999999999987544333 222333333  378999999999986422100   


Q ss_pred             -----------H----H----H----HHHHHc--------------CCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854          102 -----------K----Q----V----TFHRKK--------------NLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus       102 -----------~----~----~----~~~~~~--------------~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                                 .    .    .    .+....              ..+++.+||++|.|++++++.+.....+
T Consensus       145 ~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~  218 (227)
T d1g7sa4         145 PFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (227)
T ss_dssp             CHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHhhhcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence                       0    0    0    111100              1368999999999999999998876644

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=3e-13  Score=99.00  Aligned_cols=90  Identities=16%  Similarity=0.154  Sum_probs=67.6

Q ss_pred             ccccceEEEEEEEEEECCeEEEEEEEeCCCccccC-CccccccccCcEEEEEEeCCChhhH-HhHHHHHHHHHh----hc
Q 029854            7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-GLRDGYYIHGQCAIIMFDVTARLTY-KNVPTWHRDLCR----VC   80 (186)
Q Consensus         7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-~~~~~~~~~ad~vilv~D~~~~~s~-~~i~~~~~~~~~----~~   80 (186)
                      ..||++.++....+. ++..+.+.+||++|++++. ..+..++..++++++|+|+++..++ .....|+..+..    ..
T Consensus        28 ~~~t~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~  106 (207)
T d2fh5b1          28 TQTSITDSSAIYKVN-NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALK  106 (207)
T ss_dssp             BCCCCSCEEEEEECS-STTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTST
T ss_pred             ccCCeeEEEEEEEEe-eeeeeeeeeeeccccccccchhhhhhhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhh
Confidence            458898887654432 5667899999999999885 5678888999999999999997764 444444444332    12


Q ss_pred             CCCCEEEEEeCCCCCCc
Q 029854           81 ENIPIVLCGNKVDVKNR   97 (186)
Q Consensus        81 ~~~p~ilv~nK~Dl~~~   97 (186)
                      ...|++|++||+|+++.
T Consensus       107 ~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1         107 NSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             TCCEEEEEEECTTSTTC
T ss_pred             cCCcEEEEEECcccCCC
Confidence            46899999999999753

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.37  E-value=9.9e-14  Score=99.88  Aligned_cols=112  Identities=16%  Similarity=0.202  Sum_probs=72.3

Q ss_pred             EEEEEeCCCccccC----Cccccc---cccCcEEEEEEeCCChhhHHhHHH--HHHHHHhh----cCCCCEEEEEeCCCC
Q 029854           28 RFYCWDTAGQEKFG----GLRDGY---YIHGQCAIIMFDVTARLTYKNVPT--WHRDLCRV----CENIPIVLCGNKVDV   94 (186)
Q Consensus        28 ~l~l~Dt~G~~~~~----~~~~~~---~~~ad~vilv~D~~~~~s~~~i~~--~~~~~~~~----~~~~p~ilv~nK~Dl   94 (186)
                      .+.+|||||..+..    .+...+   +..++.++++++............  +.......    ..++|+++|+||+|+
T Consensus        50 ~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl  129 (185)
T d1lnza2          50 SFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDM  129 (185)
T ss_dssp             EEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTS
T ss_pred             EEEEecCCCcccCchHHHHHHHHHHHHHHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccch
Confidence            56789999964322    222222   356889998888765543222221  11111111    146899999999999


Q ss_pred             CCcccChHHHHHHHHc--CCcEEEeccCCCCCchHHHHHHHHHHhCCCC
Q 029854           95 KNRQVKAKQVTFHRKK--NLQYYEISAKSNYNFEKPFLYLARKLAGDPN  141 (186)
Q Consensus        95 ~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  141 (186)
                      .+...  ....+....  +.+++.+||++|.||+++++.+++.+.+.+.
T Consensus       130 ~~~~~--~~~~~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~L~~~p~  176 (185)
T d1lnza2         130 PEAAE--NLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTPE  176 (185)
T ss_dssp             TTHHH--HHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred             HhHHH--HHHHHHHHhccCCcEEEEECCCCCCHHHHHHHHHHhhhhCCC
Confidence            75432  122333333  5789999999999999999999999876553

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.36  E-value=1e-12  Score=95.54  Aligned_cols=110  Identities=15%  Similarity=0.084  Sum_probs=77.4

Q ss_pred             EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHH--
Q 029854           26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ--  103 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~--  103 (186)
                      ...+.++||||+..|.......+..+|++++|+|+.+.........-+..+... .-.+++++.||+|+.+.....+.  
T Consensus        77 ~~~~~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~-~~~~iiv~inK~D~~d~~~~~~~~~  155 (195)
T d1kk1a3          77 VRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQKNIIIAQNKIELVDKEKALENYR  155 (195)
T ss_dssp             EEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHHHH
T ss_pred             ceeEeeeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh-cCccceeeeecccchhhHHHHHHHH
Confidence            467889999999999888888889999999999998753222222222222222 23558889999999764322221  


Q ss_pred             --HHHHHHc---CCcEEEeccCCCCCchHHHHHHHHHH
Q 029854          104 --VTFHRKK---NLQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus       104 --~~~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                        .++....   +++++++||++|.||++|++.+.+.+
T Consensus       156 ~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         156 QIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence              1233222   25799999999999999999998765

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.36  E-value=4.1e-13  Score=94.18  Aligned_cols=105  Identities=19%  Similarity=0.110  Sum_probs=71.8

Q ss_pred             eEEEEEEEeCCCccccCC---------ccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 029854           25 GKIRFYCWDTAGQEKFGG---------LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK   95 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~~---------~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~   95 (186)
                      ....+.+|||||......         .....+..||++++|+|++++.+.+...     +.......++++++||+|+.
T Consensus        46 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~d~~~~~~~~~~~-----~~~~~~~~~~i~~~~k~d~~  120 (160)
T d1xzpa2          46 RGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRK-----ILERIKNKRYLVVINKVDVV  120 (160)
T ss_dssp             TTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHH-----HHHHHTTSSEEEEEEECSSC
T ss_pred             CCeeEEeccccccccCCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCcchhhhh-----hhhhcccccceeeeeecccc
Confidence            345788999999532111         1122357899999999999876654322     22223468999999999998


Q ss_pred             CcccChHHHHHHHHcCCcEEEeccCCCCCchHHHHHHHHH
Q 029854           96 NRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  135 (186)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  135 (186)
                      +.....+.. .....+.+++.+||++|.||++|+++|.+.
T Consensus       121 ~~~~~~~~~-~~~~~~~~~~~vSA~~g~gi~~L~~~I~ke  159 (160)
T d1xzpa2         121 EKINEEEIK-NKLGTDRHMVKISALKGEGLEKLEESIYRE  159 (160)
T ss_dssp             CCCCHHHHH-HHHTCSTTEEEEEGGGTCCHHHHHHHHHHH
T ss_pred             chhhhHHHH-HHhCCCCcEEEEECCCCCCHHHHHHHHHhc
Confidence            654322222 122335689999999999999999998764

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.34  E-value=1.5e-12  Score=95.35  Aligned_cols=110  Identities=16%  Similarity=0.125  Sum_probs=76.1

Q ss_pred             EEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHH--
Q 029854           27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV--  104 (186)
Q Consensus        27 ~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~--  104 (186)
                      .++.+.||||+..|.......+..||++|+|+|+.+.-.-...+.-+..+.. ..-.|+||+.||+|+.+........  
T Consensus        86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~-~~i~~iIV~vNK~Dl~~~~~~~~~~~~  164 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGI-IGVKNLIIVQNKVDVVSKEEALSQYRQ  164 (205)
T ss_dssp             EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTCCCEEEEEECGGGSCHHHHHHHHHH
T ss_pred             EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHH-cCCceeeeccccCCCccchHHHHHHHH
Confidence            4678899999999987777778889999999999875211111211222222 2235899999999997643222211  


Q ss_pred             --HHHHHc---CCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854          105 --TFHRKK---NLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus       105 --~~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                        .+....   +++++.+||++|.||+++++.+...+.
T Consensus       165 ~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip  202 (205)
T d2qn6a3         165 IKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK  202 (205)
T ss_dssp             HHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCC
Confidence              222222   367999999999999999999987764

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.26  E-value=8.1e-12  Score=89.25  Aligned_cols=107  Identities=17%  Similarity=0.051  Sum_probs=68.0

Q ss_pred             EEEEeCCCccccC---------------CccccccccCcEEEEEEeCCChhhHHhHH----------HHHHHHHhhcCCC
Q 029854           29 FYCWDTAGQEKFG---------------GLRDGYYIHGQCAIIMFDVTARLTYKNVP----------TWHRDLCRVCENI   83 (186)
Q Consensus        29 l~l~Dt~G~~~~~---------------~~~~~~~~~ad~vilv~D~~~~~s~~~i~----------~~~~~~~~~~~~~   83 (186)
                      +++|||||.....               ......++.+|++++|+|++.........          ..++.+..  .+.
T Consensus        45 ~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~--~~~  122 (184)
T d2cxxa1          45 HKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE--LDI  122 (184)
T ss_dssp             EEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH--TTC
T ss_pred             ceecccCCceeccccccccccccchhhhhhhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH--cCC
Confidence            5688999953221               11234456899999999998654322111          12222222  379


Q ss_pred             CEEEEEeCCCCCCcccChHHHHHHHHcC-------CcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854           84 PIVLCGNKVDVKNRQVKAKQVTFHRKKN-------LQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus        84 p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      |+++|+||+|+.+... .....+.....       ..++++||++|.||+++++.+.+.+.+
T Consensus       123 p~iiv~NK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         123 PTIVAVNKLDKIKNVQ-EVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             CEEEEEECGGGCSCHH-HHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CEEEEEeeeehhhhHH-HHHHHHHHHhcccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence            9999999999764221 11111222222       248899999999999999999988864

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.22  E-value=7e-12  Score=91.26  Aligned_cols=123  Identities=9%  Similarity=-0.046  Sum_probs=80.8

Q ss_pred             eEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeC
Q 029854           12 GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNK   91 (186)
Q Consensus        12 g~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK   91 (186)
                      |+.+......+......+.++||||+..|.......+..||++|+|+|+.+...-+. +..+..+..+ ...|+|++.||
T Consensus        51 giTi~~~~~~~~~~~~~~~~iDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~QT-~~~~~~a~~~-~~~~iIv~iNK  128 (196)
T d1d2ea3          51 GITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQI-GVEHVVVYVNK  128 (196)
T ss_dssp             TEEEECEEEEEECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHHT-TCCCEEEEEEC
T ss_pred             CccCCcceEEEEeceeeEEeecCcchHHHHHHHHHHHhhcCeEEEEEEcCCCCchhH-HHHHHHHHHh-cCCcEEEEEec
Confidence            333333333444455677788999999998877788899999999999997543222 2223333222 34689999999


Q ss_pred             CCCCCcccC-----hHHHHHHHHcC-----CcEEEeccCCC----------CCchHHHHHHHHHH
Q 029854           92 VDVKNRQVK-----AKQVTFHRKKN-----LQYYEISAKSN----------YNFEKPFLYLARKL  136 (186)
Q Consensus        92 ~Dl~~~~~~-----~~~~~~~~~~~-----~~~~~~Sa~~~----------~gi~~l~~~l~~~i  136 (186)
                      +|+......     .+...+....+     ++++.+||++|          .|+.++++.+...+
T Consensus       129 ~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~i  193 (196)
T d1d2ea3         129 ADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (196)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             ccccccHHHHHHHHHHHHHHHHHhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhC
Confidence            998643211     12223333333     57999999998          58888888876654

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.12  E-value=2.8e-10  Score=81.23  Aligned_cols=113  Identities=18%  Similarity=0.164  Sum_probs=71.7

Q ss_pred             EEECCeEEEEEEEeCCCccccCCc------------cccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEE
Q 029854           20 FFTNCGKIRFYCWDTAGQEKFGGL------------RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVL   87 (186)
Q Consensus        20 ~~~~~~~~~l~l~Dt~G~~~~~~~------------~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~il   87 (186)
                      +.+++.  .+.++|++|.......            ....++.+|++++|+|++.....+ ...+...+..  .+.|+|+
T Consensus        51 ~~~~~~--~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dvii~v~d~~~~~~~~-~~~~~~~~~~--~~~~~i~  125 (186)
T d1mkya2          51 VFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQ-DQRMAGLMER--RGRASVV  125 (186)
T ss_dssp             EEETTE--EEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH--TTCEEEE
T ss_pred             eccCCc--eeeeeccCCccccccccccccccchhHHHHHHHhcCCEEEEeecccccchhh-HHHHHHHHHH--cCCceee
Confidence            344554  5678899997543322            223457899999999998754322 2334444433  3789999


Q ss_pred             EEeCCCCCCcc-cC-hHHHHHHHHc-----CCcEEEeccCCCCCchHHHHHHHHHHh
Q 029854           88 CGNKVDVKNRQ-VK-AKQVTFHRKK-----NLQYYEISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus        88 v~nK~Dl~~~~-~~-~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                      |+||+|+.... .. .+..+.....     ..+++.+||++|.|++++++.|.+.+.
T Consensus       126 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSa~~g~gv~~L~~~i~~~~~  182 (186)
T d1mkya2         126 VFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYA  182 (186)
T ss_dssp             EEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             eccchhhhcchhhhhhhHHHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            99999986422 11 1222222221     357999999999999999999977664

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.02  E-value=1.5e-10  Score=84.63  Aligned_cols=107  Identities=15%  Similarity=0.048  Sum_probs=67.7

Q ss_pred             ccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCC-EEE
Q 029854            9 ATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVL   87 (186)
Q Consensus         9 ~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p-~il   87 (186)
                      -|+...+.  .+..++.  ++.|+||||+..|.......++.||++|||+|+.+.-..+....|. .+..  .++| +++
T Consensus        53 iTi~~~~~--~~~~~~~--~i~iiDtPGh~df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~-~~~~--~gi~~iiv  125 (204)
T d2c78a3          53 ITINTAHV--EYETAKR--HYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHIL-LARQ--VGVPYIVV  125 (204)
T ss_dssp             CCCSCEEE--EEECSSC--EEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHH-HHHH--TTCCCEEE
T ss_pred             eEEEeeEE--EEEeCCe--EEEEEeCCCchhhHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHH-HHHH--cCCCeEEE
Confidence            34443333  3444554  5667899999999888888889999999999998875554433333 2222  2565 778


Q ss_pred             EEeCCCCCCccc-----ChHHHHHHHHcC-----CcEEEeccCCC
Q 029854           88 CGNKVDVKNRQV-----KAKQVTFHRKKN-----LQYYEISAKSN  122 (186)
Q Consensus        88 v~nK~Dl~~~~~-----~~~~~~~~~~~~-----~~~~~~Sa~~~  122 (186)
                      +.||+|+.+...     ..+...+....+     ++++.+|+..+
T Consensus       126 ~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~i~~sa~~~  170 (204)
T d2c78a3         126 FMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLA  170 (204)
T ss_dssp             EEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHH
T ss_pred             EEEecccCCCHHHHHHHHHHHHHHHHhcCCCcccceeeeeechhh
Confidence            899999865321     111223333333     45788887543

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.01  E-value=7.8e-10  Score=81.69  Aligned_cols=99  Identities=21%  Similarity=0.176  Sum_probs=66.6

Q ss_pred             EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCC-CEEEEEeCCCCCCccc--C--
Q 029854           26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI-PIVLCGNKVDVKNRQV--K--  100 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~-p~ilv~nK~Dl~~~~~--~--  100 (186)
                      ...+.|+||||+..|.......+..+|++|+|+|+.....-+.... +..+ .. .++ .+|++.||+|+.+...  .  
T Consensus        88 ~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~-~~~~-~~-~gv~~iiv~vNK~D~~~~~~~~~~~  164 (222)
T d1zunb3          88 KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRH-SYIA-SL-LGIKHIVVAINKMDLNGFDERVFES  164 (222)
T ss_dssp             SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHH-HHHH-HH-TTCCEEEEEEECTTTTTSCHHHHHH
T ss_pred             ceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHH-HHHH-HH-cCCCEEEEEEEccccccccceehhh
Confidence            3456778999999998887778899999999999987543332111 1111 11 254 4889999999975321  1  


Q ss_pred             --hHHHHHHHHcC-----CcEEEeccCCCCCchH
Q 029854          101 --AKQVTFHRKKN-----LQYYEISAKSNYNFEK  127 (186)
Q Consensus       101 --~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~  127 (186)
                        .+...+....+     ++++++||++|.||.+
T Consensus       165 ~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         165 IKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             HHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             hHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence              11223444443     3679999999999854

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.00  E-value=1.2e-09  Score=78.55  Aligned_cols=88  Identities=9%  Similarity=0.050  Sum_probs=60.7

Q ss_pred             ccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHH-HHHHHH----cCCcEEEeccCC
Q 029854           47 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-VTFHRK----KNLQYYEISAKS  121 (186)
Q Consensus        47 ~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~-~~~~~~----~~~~~~~~Sa~~  121 (186)
                      .+..++++++|+|++....-. ...+++.+..  .+.|+++|+||+|+.+.....+. ..+...    ...+++.+||++
T Consensus       102 ~~~~~~~vi~viD~~~~~~~~-~~~~~~~l~~--~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~~  178 (195)
T d1svia_         102 TREELKAVVQIVDLRHAPSND-DVQMYEFLKY--YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSET  178 (195)
T ss_dssp             HCTTEEEEEEEEETTSCCCHH-HHHHHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTT
T ss_pred             cccchhhhhhhhhcccccccc-cccccccccc--ccCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCEEEEeCCC
Confidence            345679999999998654322 1344444444  37899999999998653322222 222222    235799999999


Q ss_pred             CCCchHHHHHHHHHHh
Q 029854          122 NYNFEKPFLYLARKLA  137 (186)
Q Consensus       122 ~~gi~~l~~~l~~~i~  137 (186)
                      |.|+++++++|.+.+.
T Consensus       179 ~~gi~el~~~i~~~l~  194 (195)
T d1svia_         179 KKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             CTTHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHhC
Confidence            9999999999988763

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=98.89  E-value=5.3e-09  Score=79.11  Aligned_cols=82  Identities=20%  Similarity=0.299  Sum_probs=60.5

Q ss_pred             ccccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEE
Q 029854            7 GKATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV   86 (186)
Q Consensus         7 ~~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~i   86 (186)
                      ...|+...+.+  +..++.  ++.|+||||+..|.......++-+|++|+|+|+.+.-..+...-|.. +.+  .++|.+
T Consensus        51 r~~ti~~~~~~--~~~~~~--~~n~iDtPGh~dF~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~-~~~--~~~p~~  123 (267)
T d2dy1a2          51 HRTTVRTGVAP--LLFRGH--RVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTV-AER--LGLPRM  123 (267)
T ss_dssp             TTSCCSCEEEE--EEETTE--EEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH--TTCCEE
T ss_pred             hCCeEEeeccc--cccccc--ceeEEccCchhhhhhhhhhhhcccCceEEEeeccCCccchhHHHHHh-hhh--cccccc
Confidence            44466555553  344554  56788999999999988889999999999999998765554444433 333  279999


Q ss_pred             EEEeCCCCC
Q 029854           87 LCGNKVDVK   95 (186)
Q Consensus        87 lv~nK~Dl~   95 (186)
                      +++||+|..
T Consensus       124 i~iNk~D~~  132 (267)
T d2dy1a2         124 VVVTKLDKG  132 (267)
T ss_dssp             EEEECGGGC
T ss_pred             ccccccccc
Confidence            999999964

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.89  E-value=1.9e-09  Score=80.75  Aligned_cols=104  Identities=15%  Similarity=0.159  Sum_probs=58.1

Q ss_pred             eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChh---hHH---hHHHHHHHHHhhcCCC-CEEEEEeCCCCCCc
Q 029854           25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYK---NVPTWHRDLCRVCENI-PIVLCGNKVDVKNR   97 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~---s~~---~i~~~~~~~~~~~~~~-p~ilv~nK~Dl~~~   97 (186)
                      ....+.+.||||+..|.........-+|++|+|+|+....   ++.   +...-+..+..  .+. +++++.||+|+...
T Consensus       100 ~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~--~~i~~iiv~iNKmD~~~~  177 (245)
T d1r5ba3         100 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART--QGINHLVVVINKMDEPSV  177 (245)
T ss_dssp             SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH--TTCSSEEEEEECTTSTTC
T ss_pred             ccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHH--cCCCeEEEEEEcCCCCcc
Confidence            3356778899999999998888899999999999998742   111   11221211111  244 48899999999743


Q ss_pred             ccChH----H----HHHHHHc-------CCcEEEeccCCCCCchHHHH
Q 029854           98 QVKAK----Q----VTFHRKK-------NLQYYEISAKSNYNFEKPFL  130 (186)
Q Consensus        98 ~~~~~----~----~~~~~~~-------~~~~~~~Sa~~~~gi~~l~~  130 (186)
                      ...+.    .    ..+....       .++++++||++|.||.+++.
T Consensus       178 ~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         178 QWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             chhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            22221    1    1111111       24799999999999977654

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.85  E-value=1.2e-09  Score=80.73  Aligned_cols=105  Identities=15%  Similarity=0.128  Sum_probs=69.1

Q ss_pred             CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHH---hHHHHHHHH--HhhcCCCCEEEEEeCCCCCCc
Q 029854           23 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK---NVPTWHRDL--CRVCENIPIVLCGNKVDVKNR   97 (186)
Q Consensus        23 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~---~i~~~~~~~--~~~~~~~p~ilv~nK~Dl~~~   97 (186)
                      +.....+.|.||||+..|.......++-+|++|+|+|+.+...-+   -..+..+.+  .......++|++.||+|+...
T Consensus        77 ~~~~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iNK~D~~~~  156 (224)
T d1jnya3          77 ETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEP  156 (224)
T ss_dssp             ECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSS
T ss_pred             ecCCceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhCCCceEEEEEcccCCCc
Confidence            334567888899999999998888899999999999999753111   011111111  111234578999999998742


Q ss_pred             ccChH--------HHHHHHHcC-----CcEEEeccCCCCCchH
Q 029854           98 QVKAK--------QVTFHRKKN-----LQYYEISAKSNYNFEK  127 (186)
Q Consensus        98 ~~~~~--------~~~~~~~~~-----~~~~~~Sa~~~~gi~~  127 (186)
                      .....        ...+...++     ++++.+||..|.||.+
T Consensus       157 ~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         157 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             cccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            22211        123333333     4689999999999853

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.85  E-value=2.1e-09  Score=80.20  Aligned_cols=101  Identities=15%  Similarity=0.120  Sum_probs=66.9

Q ss_pred             eEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChh---hHH---hHHHHHHHHHhhcCCCC-EEEEEeCCCCCCc
Q 029854           25 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYK---NVPTWHRDLCRVCENIP-IVLCGNKVDVKNR   97 (186)
Q Consensus        25 ~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~---s~~---~i~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~   97 (186)
                      ...++.|.||||+..|.......+.-+|++|+|+|++...   .+.   +...-+.....  .++| +|++.||+|+.+.
T Consensus        82 ~~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~--~gv~~iiv~iNKmD~~~~  159 (239)
T d1f60a3          82 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--LGVRQLIVAVNKMDSVKW  159 (239)
T ss_dssp             SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--TTCCEEEEEEECGGGGTT
T ss_pred             CCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHH--cCCCeEEEEEECCCCCCC
Confidence            3457778899999999888888899999999999998642   110   11111111111  2555 8889999998753


Q ss_pred             cc------ChHHHHHHHHcC-----CcEEEeccCCCCCchH
Q 029854           98 QV------KAKQVTFHRKKN-----LQYYEISAKSNYNFEK  127 (186)
Q Consensus        98 ~~------~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~  127 (186)
                      ..      ..+...+....+     ++++.+|+..|.|+-+
T Consensus       160 d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         160 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            21      112223444443     4689999999999765

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.82  E-value=7.7e-09  Score=78.49  Aligned_cols=102  Identities=18%  Similarity=0.177  Sum_probs=72.0

Q ss_pred             cccceEEEEEEEEEECCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEE
Q 029854            8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVL   87 (186)
Q Consensus         8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~il   87 (186)
                      .-||...+.+  +..++  .++.|+||||+..|.......++-+|++|+|+|+.+.-..+...-|.. ..+  .++|.++
T Consensus        56 ~~si~~~~~~--~~~~~--~~~n~iDtPG~~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~-a~~--~~lP~i~  128 (276)
T d2bv3a2          56 GITITAAVTT--CFWKD--HRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK--YKVPRIA  128 (276)
T ss_dssp             CCCCCCSEEE--EEETT--EEEEEECCCSSSSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHH-HHT--TTCCEEE
T ss_pred             CCccccceee--eccCC--eEEEEecCCchhhhHHHHHHHHHhhhheEEeccccCCcchhHHHHHHH-HHH--cCCCEEE
Confidence            3344444443  33344  466778999999999999999999999999999998766555445533 333  3899999


Q ss_pred             EEeCCCCCCcccChHHHHHHHHcCCcEEE
Q 029854           88 CGNKVDVKNRQVKAKQVTFHRKKNLQYYE  116 (186)
Q Consensus        88 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  116 (186)
                      ++||+|...........++...++..++.
T Consensus       129 fINKmDr~~ad~~~~l~ei~~~l~~~~vp  157 (276)
T d2bv3a2         129 FANKMDKTGADLWLVIRTMQERLGARPVV  157 (276)
T ss_dssp             EEECTTSTTCCHHHHHHHHHHTTCCCEEE
T ss_pred             EEecccccccccchhHHHHHHHhCCCeEE
Confidence            99999998765544444555666654443

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=1.5e-08  Score=71.43  Aligned_cols=111  Identities=17%  Similarity=0.149  Sum_probs=72.7

Q ss_pred             EEEEEEeCCCccc---------cCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCc
Q 029854           27 IRFYCWDTAGQEK---------FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR   97 (186)
Q Consensus        27 ~~l~l~Dt~G~~~---------~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~   97 (186)
                      ..+..||++|...         +..........+++++++.|.++.....  ..+...+.+  ...|.++|.||+|+...
T Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--~~~~~~l~~--~~~~~i~v~~k~d~~~~  128 (179)
T d1egaa1          53 YQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDD--EMVLNKLRE--GKAPVILAVNKVDNVQE  128 (179)
T ss_dssp             EEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCCCHHH--HHHHHHHHS--SSSCEEEEEESTTTCCC
T ss_pred             ceeEeecCCCceecchhhhhhhhhhccccchhhcceeEEEEecCccchhH--HHHHHHhhh--ccCceeeeeeeeeccch
Confidence            3455678877432         2333444566789999999988643222  222333332  46789999999998753


Q ss_pred             ccC--hHHHHHHHHcC-CcEEEeccCCCCCchHHHHHHHHHHhCCCC
Q 029854           98 QVK--AKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKLAGDPN  141 (186)
Q Consensus        98 ~~~--~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  141 (186)
                      ...  .....+...++ .+++++||++|.|++++++.+.+.+.+.+.
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~lpe~~~  175 (179)
T d1egaa1         129 KADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATH  175 (179)
T ss_dssp             HHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCBCCC
T ss_pred             hhhhhhHhhhhhhhcCCCCEEEEeCcCCCCHHHHHHHHHHhCCCCCC
Confidence            221  22223444444 589999999999999999999988866644

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.73  E-value=2.6e-09  Score=77.22  Aligned_cols=89  Identities=17%  Similarity=0.177  Sum_probs=60.2

Q ss_pred             cccceEEEEEEEEEECCeEEEEEEEeCCCccccCCcccccc----ccCcEEEEEEeCCC-hhhHHhHHHHHHHHH----h
Q 029854            8 KATIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYY----IHGQCAIIMFDVTA-RLTYKNVPTWHRDLC----R   78 (186)
Q Consensus         8 ~~Tig~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~----~~ad~vilv~D~~~-~~s~~~i~~~~~~~~----~   78 (186)
                      .||++.+.....  ++.....+.+|||||++.+...+..++    ..++.+++++|+.+ ..++..+..|+..+.    .
T Consensus        29 ~~~tt~~~~~~~--~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~  106 (209)
T d1nrjb_          29 RPTVVSQEPLSA--ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITES  106 (209)
T ss_dssp             CCBCCCSSCEEE--TTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCeEEecceEEE--EEeCCeEEEEEecccccchhhHHHHHHHHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHH
Confidence            455544444333  344555678999999998876655554    44689999999774 556666666655443    2


Q ss_pred             hc-CCCCEEEEEeCCCCCCcc
Q 029854           79 VC-ENIPIVLCGNKVDVKNRQ   98 (186)
Q Consensus        79 ~~-~~~p~ilv~nK~Dl~~~~   98 (186)
                      .. .+.|+++|+||+|+.+..
T Consensus       107 ~~~~~~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_         107 SCENGIDILIACNKSELFTAR  127 (209)
T ss_dssp             HSTTCCCEEEEEECTTSTTCC
T ss_pred             HHhccCCeEEEEEeecccccC
Confidence            22 579999999999997644

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.60  E-value=5.5e-08  Score=73.65  Aligned_cols=89  Identities=12%  Similarity=0.109  Sum_probs=65.6

Q ss_pred             ccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCCCCC
Q 029854           45 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYN  124 (186)
Q Consensus        45 ~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  124 (186)
                      ...++.+|+||+|+|+.++.+..+  ..+..+   ..++|+|+|.||+|+.+........+.....+..++.+|++++.|
T Consensus        10 ~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~---~~~Kp~IlVlNK~DLv~~~~~~~w~~~f~~~~~~~i~isa~~~~~   84 (273)
T d1puja_          10 TEKLKLIDIVYELVDARIPMSSRN--PMIEDI---LKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQG   84 (273)
T ss_dssp             HHHGGGCSEEEEEEETTSTTTTSC--HHHHHH---CSSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTT
T ss_pred             HHHHHhCCEEEEEEECCCCCCCCC--HHHHHH---HcCCCeEEEEECccCCchHHHHHHHHHHHhcCCccceeecccCCC
Confidence            446889999999999999877554  223333   347899999999999865443333343445567899999999999


Q ss_pred             chHHHHHHHHHHhC
Q 029854          125 FEKPFLYLARKLAG  138 (186)
Q Consensus       125 i~~l~~~l~~~i~~  138 (186)
                      +.++...+.+.+.+
T Consensus        85 ~~~~~~~~~~~l~~   98 (273)
T d1puja_          85 LNQIVPASKEILQE   98 (273)
T ss_dssp             GGGHHHHHHHHHHH
T ss_pred             ccccchhhhhhhhh
Confidence            99888877766543

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.52  E-value=5.3e-08  Score=75.91  Aligned_cols=70  Identities=19%  Similarity=0.183  Sum_probs=57.8

Q ss_pred             CCeEEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 029854           23 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK   95 (186)
Q Consensus        23 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~   95 (186)
                      +++.+.+.|+||||+..|.......++-+|++|+|+|+...-..+...-|.....   .+.|+++++||+|..
T Consensus        92 ~~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~---~~~p~i~viNKiDr~  161 (341)
T d1n0ua2          92 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG---ERIKPVVVINKVDRA  161 (341)
T ss_dssp             CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH---TTCEEEEEEECHHHH
T ss_pred             cccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHH---cCCCeEEEEECcccc
Confidence            4467889999999999999999999999999999999998766665444444333   379999999999975

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.45  E-value=3.1e-07  Score=67.29  Aligned_cols=88  Identities=15%  Similarity=0.073  Sum_probs=64.4

Q ss_pred             cccccccCcEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHHHHHHHHc--CCcEEEeccC
Q 029854           44 RDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK--NLQYYEISAK  120 (186)
Q Consensus        44 ~~~~~~~ad~vilv~D~~~~~-s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~Sa~  120 (186)
                      .+....+.|.+++|+.+.++. +...+.+|+-....  .+.|.+||.||+||.+.........+...+  +.+++.+|++
T Consensus         4 ~RP~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~--~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~~~~~~v~~vSa~   81 (225)
T d1u0la2           4 TKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK--NELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAK   81 (225)
T ss_dssp             TTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTT
T ss_pred             CCCCcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--cCCCEEEEEeCcccCCHHHHHHHHHhhcccccceeEEEeccc
Confidence            345678899999999988754 55666777766555  489999999999997643323333333332  4689999999


Q ss_pred             CCCCchHHHHHHH
Q 029854          121 SNYNFEKPFLYLA  133 (186)
Q Consensus       121 ~~~gi~~l~~~l~  133 (186)
                      ++.|++++...+.
T Consensus        82 ~~~g~~~L~~~l~   94 (225)
T d1u0la2          82 TGMGIEELKEYLK   94 (225)
T ss_dssp             TCTTHHHHHHHHS
T ss_pred             cchhHhhHHHHhc
Confidence            9999998887664

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.27  E-value=3.3e-07  Score=67.39  Aligned_cols=87  Identities=13%  Similarity=0.088  Sum_probs=64.5

Q ss_pred             cccccccCcEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChH-HH---HHHHHcCCcEEEec
Q 029854           44 RDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QV---TFHRKKNLQYYEIS  118 (186)
Q Consensus        44 ~~~~~~~ad~vilv~D~~~~~-s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~-~~---~~~~~~~~~~~~~S  118 (186)
                      .+....+.|.+++|+++.++. ++..+.+|+-....  .+.+.+||.||+||.+...... ..   ......+++++.+|
T Consensus         4 ~RP~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~--~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~S   81 (231)
T d1t9ha2           4 IRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA--NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTS   81 (231)
T ss_dssp             TTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT--TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECC
T ss_pred             CCCCccccCEEEEEEECCCCCCCHHHHHHHHHHHHH--cCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeee
Confidence            345568999999999998764 66667777666554  4789999999999976433222 12   23445589999999


Q ss_pred             cCCCCCchHHHHHH
Q 029854          119 AKSNYNFEKPFLYL  132 (186)
Q Consensus       119 a~~~~gi~~l~~~l  132 (186)
                      ++++.|++++...+
T Consensus        82 a~~~~gl~~L~~~l   95 (231)
T d1t9ha2          82 SKDQDSLADIIPHF   95 (231)
T ss_dssp             HHHHTTCTTTGGGG
T ss_pred             cCChhHHHHHHHhh
Confidence            99999999887655

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.18  E-value=8e-07  Score=65.06  Aligned_cols=109  Identities=16%  Similarity=0.058  Sum_probs=64.7

Q ss_pred             EEEEEEeCCCccccCCccccc---c--ccCcEEEEEEeCCC---hhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcc
Q 029854           27 IRFYCWDTAGQEKFGGLRDGY---Y--IHGQCAIIMFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ   98 (186)
Q Consensus        27 ~~l~l~Dt~G~~~~~~~~~~~---~--~~ad~vilv~D~~~---~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~   98 (186)
                      ..+.+.|++|+..+.......   .  ...+++++++|+..   +..+.........+. ..-..|.+++.||+|+....
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~-~~~~~~~ivvinK~D~~~~~  173 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLID-LRLGATTIPALNKVDLLSEE  173 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHH-HHHTSCEEEEECCGGGCCHH
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHH-HHhCCCceeeeeccccccHH
Confidence            346778999987653322221   1  23568999999853   333322211111111 11368999999999987521


Q ss_pred             cChH----------------------------HHHHHHH--cCCcEEEeccCCCCCchHHHHHHHHHH
Q 029854           99 VKAK----------------------------QVTFHRK--KNLQYYEISAKSNYNFEKPFLYLARKL  136 (186)
Q Consensus        99 ~~~~----------------------------~~~~~~~--~~~~~~~~Sa~~~~gi~~l~~~l~~~i  136 (186)
                      ....                            ......+  ..++++.+||++|+|+++++..|.++.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         174 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            1000                            0001111  236899999999999999999988764

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=98.09  E-value=7.7e-06  Score=56.99  Aligned_cols=84  Identities=14%  Similarity=0.047  Sum_probs=52.7

Q ss_pred             cCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChHH----HHHHHHc--CCcEEEeccCCCC
Q 029854           50 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ----VTFHRKK--NLQYYEISAKSNY  123 (186)
Q Consensus        50 ~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~----~~~~~~~--~~~~~~~Sa~~~~  123 (186)
                      .+..++.+.+......... ..++..+..  ...++++++||+|+.+.......    .+.....  ..+++.+||++|.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~vSA~~g~  174 (188)
T d1puia_          98 SLQGLVVLMDIRHPLKDLD-QQMIEWAVD--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQ  174 (188)
T ss_dssp             TEEEEEEEEETTSCCCHHH-HHHHHHHHH--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTB
T ss_pred             heeEEEEeecccccchhHH-HHHHHHhhh--ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEEEeCCCCC
Confidence            4556666666665433222 233434333  36899999999998753322221    1222222  2478999999999


Q ss_pred             CchHHHHHHHHHH
Q 029854          124 NFEKPFLYLARKL  136 (186)
Q Consensus       124 gi~~l~~~l~~~i  136 (186)
                      ||++|++.|...+
T Consensus       175 Gid~L~~~i~~~~  187 (188)
T d1puia_         175 GVDKLRQKLDTWF  187 (188)
T ss_dssp             SHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999987654

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.66  E-value=6.1e-05  Score=59.47  Aligned_cols=107  Identities=15%  Similarity=0.154  Sum_probs=64.1

Q ss_pred             EEEEEeCCCccccCCc-----cccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCC------
Q 029854           28 RFYCWDTAGQEKFGGL-----RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN------   96 (186)
Q Consensus        28 ~l~l~Dt~G~~~~~~~-----~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~------   96 (186)
                      .+.||||||.......     ....+..+|++|++.|..-...  + ..+++.+.+  .++|+++|.||+|...      
T Consensus       108 ~~~l~DtPG~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~--d-~~l~~~l~~--~~k~~~~V~nK~D~~~~~~~~~  182 (400)
T d1tq4a_         108 NVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKN--D-IDIAKAISM--MKKEFYFVRTKVDSDITNEADG  182 (400)
T ss_dssp             TEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCCCHH--H-HHHHHHHHH--TTCEEEEEECCHHHHHHHHHTT
T ss_pred             eEEEEeCCCcccccccHHHHHHHhhhhcceEEEEecCCCCCHH--H-HHHHHHHHH--cCCCEEEEEeCcccccchhhhc
Confidence            4669999997654332     2233567899988887543222  1 233444444  3789999999999531      


Q ss_pred             --cccCh-----HH----HHHHHHcCC---cEEEeccCC--CCCchHHHHHHHHHHhCC
Q 029854           97 --RQVKA-----KQ----VTFHRKKNL---QYYEISAKS--NYNFEKPFLYLARKLAGD  139 (186)
Q Consensus        97 --~~~~~-----~~----~~~~~~~~~---~~~~~Sa~~--~~gi~~l~~~l~~~i~~~  139 (186)
                        .....     ..    .......++   +++.+|...  ..|+.++.+.+.+.+...
T Consensus       183 ~~~~~~~e~~l~~ir~~~~~~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~  241 (400)
T d1tq4a_         183 EPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  241 (400)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHHH
Confidence              00011     11    111222232   578888764  448999999988887654

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.28  E-value=0.00013  Score=56.06  Aligned_cols=84  Identities=12%  Similarity=-0.022  Sum_probs=51.8

Q ss_pred             ccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChH----HHHHHH-------HcCCcEE
Q 029854           47 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK----QVTFHR-------KKNLQYY  115 (186)
Q Consensus        47 ~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~----~~~~~~-------~~~~~~~  115 (186)
                      +...+|.+++|.++...+..+.++.-   +.+    .+-++|+||+|+........    ......       .+..+++
T Consensus       164 i~~~aD~~l~v~~P~~Gd~iq~~k~g---i~e----~aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~  236 (327)
T d2p67a1         164 VARMVDCFISLQIAGGGDDLQGIKKG---LME----VADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVL  236 (327)
T ss_dssp             HHTTCSEEEEEECC------CCCCHH---HHH----HCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEE
T ss_pred             hhhccceEEEEecCCCchhhhhhchh---hhc----cccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeE
Confidence            45679999999988776665544332   222    24478889999876322111    111111       1124799


Q ss_pred             EeccCCCCCchHHHHHHHHHHh
Q 029854          116 EISAKSNYNFEKPFLYLARKLA  137 (186)
Q Consensus       116 ~~Sa~~~~gi~~l~~~l~~~i~  137 (186)
                      .|||++|.||+++++.|.++..
T Consensus       237 ~~SA~~g~Gi~eL~~~I~~~~~  258 (327)
T d2p67a1         237 TCSALEKRGIDEIWHAIIDFKT  258 (327)
T ss_dssp             ECBGGGTBSHHHHHHHHHHHHH
T ss_pred             EEEeeCCCCHHHHHHHHHHHHH
Confidence            9999999999999999987664

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.13  E-value=0.00036  Score=53.40  Aligned_cols=102  Identities=9%  Similarity=0.072  Sum_probs=60.7

Q ss_pred             EEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccChH-HH-
Q 029854           27 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QV-  104 (186)
Q Consensus        27 ~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~-~~-  104 (186)
                      +.+.|+.|.|.-.-   -......+|.+++|..+...+..+.++   ..+.    ..+=++|+||+|+.+...... .. 
T Consensus       144 ~d~iiiETVG~gq~---e~~~~~~~D~~v~v~~p~~GD~iQ~~k---~gil----E~aDi~vvNKaD~~~~~~~~~~~~~  213 (323)
T d2qm8a1         144 FDVILVETVGVGQS---ETAVADLTDFFLVLMLPGAGDELQGIK---KGIF----ELADMIAVNKADDGDGERRASAAAS  213 (323)
T ss_dssp             CCEEEEEECSSSSC---HHHHHTTSSEEEEEECSCC------CC---TTHH----HHCSEEEEECCSTTCCHHHHHHHHH
T ss_pred             CCeEEEeehhhhhh---hhhhhcccceEEEEeeccchhhhhhhh---hhHh----hhhheeeEeccccccchHHHHHHHH
Confidence            34456677664221   122345699999999998875544321   1122    235588899999875332211 11 


Q ss_pred             HHHHH----------cCCcEEEeccCCCCCchHHHHHHHHHHhC
Q 029854          105 TFHRK----------KNLQYYEISAKSNYNFEKPFLYLARKLAG  138 (186)
Q Consensus       105 ~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  138 (186)
                      .+...          +..+++.+||++|.|++++.+++.+....
T Consensus       214 ~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~  257 (323)
T d2qm8a1         214 EYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSK  257 (323)
T ss_dssp             HHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHH
Confidence            11211          23579999999999999999999877643

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.49  E-value=0.0041  Score=45.58  Aligned_cols=75  Identities=8%  Similarity=-0.131  Sum_probs=43.4

Q ss_pred             EEEECCeEEEEEEEeCCCccccCCccc---------cccccCcEEEEEEeCCChh-hHHhHHHHHHHHHhhcC---CCCE
Q 029854           19 DFFTNCGKIRFYCWDTAGQEKFGGLRD---------GYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCE---NIPI   85 (186)
Q Consensus        19 ~~~~~~~~~~l~l~Dt~G~~~~~~~~~---------~~~~~ad~vilv~D~~~~~-s~~~i~~~~~~~~~~~~---~~p~   85 (186)
                      ...+++.  .+.++||||.........         ......++++||++++... +-. ....+..+...+.   -.++
T Consensus        74 ~~~~~g~--~i~viDTPGl~~~~~~~~~~~~~i~~~~~~~~~~~il~v~~~~~~r~~~~-~~~~l~~l~~~fg~~~~~~~  150 (257)
T d1h65a_          74 SRSRAGF--TLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNL-DKLVAKAITDSFGKGIWNKA  150 (257)
T ss_dssp             EEEETTE--EEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHH-HHHHHHHHHHHHCGGGGGGE
T ss_pred             EEEeccE--EEEEEeeecccCCcchHHHHHHHHHHHHhcCCCCeEEEEEECCCCCCCHH-HHHHHHHHHHHcchhhhhCE
Confidence            3344554  577889999654322111         1234678999998886531 211 1233334443332   2579


Q ss_pred             EEEEeCCCCCC
Q 029854           86 VLCGNKVDVKN   96 (186)
Q Consensus        86 ilv~nK~Dl~~   96 (186)
                      ++|.||+|...
T Consensus       151 ivv~t~~D~~~  161 (257)
T d1h65a_         151 IVALTHAQFSP  161 (257)
T ss_dssp             EEEEECCSCCC
T ss_pred             EEEEECcccCC
Confidence            99999999864

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.52  E-value=0.0072  Score=45.10  Aligned_cols=70  Identities=13%  Similarity=0.159  Sum_probs=43.9

Q ss_pred             EEEEEEeCCCcccc-------------CCccccccccCcEEEEEE-eCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCC
Q 029854           27 IRFYCWDTAGQEKF-------------GGLRDGYYIHGQCAIIMF-DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV   92 (186)
Q Consensus        27 ~~l~l~Dt~G~~~~-------------~~~~~~~~~~ad~vilv~-D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~   92 (186)
                      ..+.|+||||....             ..+...|+..++.+|+++ +.+....-.....+.+.+..  ...++++|.||+
T Consensus       131 ~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~--~~~r~i~Vitk~  208 (306)
T d1jwyb_         131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP--EGKRTIGVITKL  208 (306)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--SCSSEEEEEECT
T ss_pred             CCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhCc--CCCeEEEEEecc
Confidence            45778899996432             234567888899877666 44433232334455555433  246899999999


Q ss_pred             CCCCcc
Q 029854           93 DVKNRQ   98 (186)
Q Consensus        93 Dl~~~~   98 (186)
                      |.....
T Consensus       209 D~~~~~  214 (306)
T d1jwyb_         209 DLMDKG  214 (306)
T ss_dssp             TSSCSS
T ss_pred             ccccch
Confidence            987543

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.39  E-value=0.011  Score=43.79  Aligned_cols=68  Identities=9%  Similarity=0.070  Sum_probs=43.4

Q ss_pred             EEEEEeCCCccccC-------------CccccccccCc-EEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCC
Q 029854           28 RFYCWDTAGQEKFG-------------GLRDGYYIHGQ-CAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD   93 (186)
Q Consensus        28 ~l~l~Dt~G~~~~~-------------~~~~~~~~~ad-~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~D   93 (186)
                      .+.|+||||.....             .+...|+...+ ++++|.+++...+-..+..|.+.+...  ..++++|.||+|
T Consensus       126 ~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~~~--~~r~i~Vltk~D  203 (299)
T d2akab1         126 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQ--GQRTIGVITKLD  203 (299)
T ss_dssp             SEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTT--CSSEEEEEECGG
T ss_pred             CeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHHHhCcC--CCceeeEEeccc
Confidence            47788999964321             23445666666 555666666554544455565554332  468999999999


Q ss_pred             CCCc
Q 029854           94 VKNR   97 (186)
Q Consensus        94 l~~~   97 (186)
                      ....
T Consensus       204 ~~~~  207 (299)
T d2akab1         204 LMDE  207 (299)
T ss_dssp             GSCT
T ss_pred             cccc
Confidence            8753

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=91.92  E-value=0.37  Score=33.65  Aligned_cols=93  Identities=10%  Similarity=0.011  Sum_probs=53.4

Q ss_pred             EEEEEEeCCCccccCCc----ccccc--------ccCcEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCEEEEEeCCC
Q 029854           27 IRFYCWDTAGQEKFGGL----RDGYY--------IHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVD   93 (186)
Q Consensus        27 ~~l~l~Dt~G~~~~~~~----~~~~~--------~~ad~vilv~D~~~~~-s~~~i~~~~~~~~~~~~~~p~ilv~nK~D   93 (186)
                      +.+.|+||+|.-.+...    ...+.        ...+-++||+|++... ....+...+..+      -+--++.||.|
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~------~~~~lI~TKlD  162 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV------GLTGVIVTKLD  162 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH------CCSEEEEECTT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc------CCceEEEeccC
Confidence            45678899996544321    11111        1346789999997643 333333333222      12346789999


Q ss_pred             CCCcccChHHHHHHHHcCCcEEEeccCCCCCchHHH
Q 029854           94 VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF  129 (186)
Q Consensus        94 l~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  129 (186)
                      ...+  .-....++...+.|+..++.  |++.+++.
T Consensus       163 et~~--~G~~l~~~~~~~~Pi~~i~~--Gq~p~Dl~  194 (207)
T d1okkd2         163 GTAK--GGVLIPIVRTLKVPIKFVGV--GEGPDDLQ  194 (207)
T ss_dssp             SSCC--CTTHHHHHHHHCCCEEEEEC--SSSTTCEE
T ss_pred             CCCC--ccHHHHHHHHHCCCEEEEeC--CCChHhCc
Confidence            6432  23345677888899877773  66665543

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=89.00  E-value=0.97  Score=31.49  Aligned_cols=92  Identities=14%  Similarity=0.068  Sum_probs=52.9

Q ss_pred             EEEEEEeCCCccccCC-----cc--ccccc-----cCcEEEEEEeCCChh-hHHhHHHHHHHHHhhcCCCCEEEEEeCCC
Q 029854           27 IRFYCWDTAGQEKFGG-----LR--DGYYI-----HGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVD   93 (186)
Q Consensus        27 ~~l~l~Dt~G~~~~~~-----~~--~~~~~-----~ad~vilv~D~~~~~-s~~~i~~~~~~~~~~~~~~p~ilv~nK~D   93 (186)
                      +.+.|+||+|.-.+..     +.  ....+     ..+-+++|.|++-.. ....+...+   ...   -+--++.||.|
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~---~~~---~~~~lIlTKlD  165 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFH---EAV---GLTGITLTKLD  165 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHH---HHS---CCCEEEEECCT
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhh---hcc---CCceEEEeecC
Confidence            4567889999533221     11  11111     246889999997543 333322222   221   23446789999


Q ss_pred             CCCcccChHHHHHHHHcCCcEEEeccCCCCCchHH
Q 029854           94 VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP  128 (186)
Q Consensus        94 l~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  128 (186)
                      ...+  .-....++...++|+..++  +|++|+++
T Consensus       166 e~~~--~G~~l~~~~~~~~Pi~~i~--~Gq~v~Dl  196 (211)
T d2qy9a2         166 GTAK--GGVIFSVADQFGIPIRYIG--VGERIEDL  196 (211)
T ss_dssp             TCTT--TTHHHHHHHHHCCCEEEEE--CSSSGGGE
T ss_pred             CCCC--ccHHHHHHHHHCCCEEEEe--CCCCcccC
Confidence            6433  2345577788899988887  67777553

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=88.58  E-value=0.51  Score=33.02  Aligned_cols=93  Identities=13%  Similarity=-0.030  Sum_probs=53.1

Q ss_pred             EEEEEEeCCCccccCCc----cccccc--------cCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCC
Q 029854           27 IRFYCWDTAGQEKFGGL----RDGYYI--------HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV   94 (186)
Q Consensus        27 ~~l~l~Dt~G~~~~~~~----~~~~~~--------~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl   94 (186)
                      +.+.|+||+|...+...    ...+.+        ..+-+++|.|++-..  +.+..........   -+-=+|.+|.|.
T Consensus        94 ~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~--~~~~~~~~~~~~~---~~~~lI~TKlDe  168 (213)
T d1vmaa2          94 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQAKIFKEAV---NVTGIILTKLDG  168 (213)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHHHHHHHHHS---CCCEEEEECGGG
T ss_pred             CCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCc--chhhhhhhhcccc---CCceEEEecccC
Confidence            45678899995443221    111111        146789999997643  2222322222221   244477899996


Q ss_pred             CCcccChHHHHHHHHcCCcEEEeccCCCCCchHH
Q 029854           95 KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP  128 (186)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  128 (186)
                      ..+  .-....++...+.|+..++  +|.+++++
T Consensus       169 ~~~--~G~~l~~~~~~~~Pi~~i~--~Gq~v~Dl  198 (213)
T d1vmaa2         169 TAK--GGITLAIARELGIPIKFIG--VGEKAEDL  198 (213)
T ss_dssp             CSC--TTHHHHHHHHHCCCEEEEE--CSSSGGGE
T ss_pred             CCc--ccHHHHHHHHHCCCEEEEe--CCCCcccC
Confidence            422  2345577788889988877  57767553

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.41  E-value=0.91  Score=31.23  Aligned_cols=71  Identities=13%  Similarity=0.105  Sum_probs=47.2

Q ss_pred             EEEEEEEeCCCccccCCccccccccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEE-EEEeCCCCCCcccCh
Q 029854           26 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQVKA  101 (186)
Q Consensus        26 ~~~l~l~Dt~G~~~~~~~~~~~~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~~~  101 (186)
                      .+.+.++|+++...  ......+..||.++++...+ ..++....+.+..+.+  .+.|++ +|.|+.+..+.....
T Consensus       111 ~~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~--~~~~~~giv~N~~~~~~~~~~~  182 (237)
T d1g3qa_         111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKK--AGLAILGFVLNRYGRSDRDIPP  182 (237)
T ss_dssp             GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHH--TTCEEEEEEEEEETSCTTCCCH
T ss_pred             cCCEEEEccccccc--ccchhhhhhhhccccccccc-ceecchhhHHHHHHhh--hhhhhhhhhhcccccccchhhh
Confidence            45678889987543  23334466799999999876 4466666666655554  367766 889999876544443

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=87.37  E-value=0.98  Score=31.45  Aligned_cols=93  Identities=11%  Similarity=0.037  Sum_probs=53.7

Q ss_pred             EEEEEEeCCCccccCC--c-c---ccc--cccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcc
Q 029854           27 IRFYCWDTAGQEKFGG--L-R---DGY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ   98 (186)
Q Consensus        27 ~~l~l~Dt~G~~~~~~--~-~---~~~--~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~   98 (186)
                      ..+.|+||+|...+..  + .   ..+  .-..+-+++|.|++....  .+.........   --+--++.||.|...+ 
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~--~~~~~~~~~~~---~~~~~lI~TKlDet~~-  168 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK--AYDLASKFNQA---SKIGTIIITKMDGTAK-  168 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--HHHHHHHHHHH---CTTEEEEEECTTSCSC-
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcc--hHHHHhhhhcc---cCcceEEEecccCCCc-
Confidence            4567889999654442  1 1   111  113567899999876432  22222222211   1233467899996433 


Q ss_pred             cChHHHHHHHHcCCcEEEeccCCCCCchHH
Q 029854           99 VKAKQVTFHRKKNLQYYEISAKSNYNFEKP  128 (186)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  128 (186)
                       .-....++...++|+..++  +|.+|+++
T Consensus       169 -~G~~l~~~~~~~lPi~~it--~Gq~v~DL  195 (211)
T d1j8yf2         169 -GGGALSAVAATGATIKFIG--TGEKIDEL  195 (211)
T ss_dssp             -HHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred             -ccHHHHHHHHHCcCEEEEe--CCCCcccC
Confidence             2345577788899988877  57777653

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=83.39  E-value=1.8  Score=29.86  Aligned_cols=85  Identities=13%  Similarity=0.061  Sum_probs=49.0

Q ss_pred             EEEEEEeCCCccccCCcc----ccc--cccCcEEEEEEeCCChhhHHhHHHHHHHHHhhcCCCCEEEEEeCCCCCCcccC
Q 029854           27 IRFYCWDTAGQEKFGGLR----DGY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK  100 (186)
Q Consensus        27 ~~l~l~Dt~G~~~~~~~~----~~~--~~~ad~vilv~D~~~~~s~~~i~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~  100 (186)
                      ..+.|+||+|...+....    ..+  ....+-+++|.|++....-.+   ......+.. + +-=++.+|.|...+  .
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~---~~~~f~~~~-~-~~~~I~TKlDe~~~--~  165 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALS---VARAFDEKV-G-VTGLVLTKLDGDAR--G  165 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHH---HHHHHHHHT-C-CCEEEEECGGGCSS--C
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHH---HHHHHHhhC-C-CCeeEEeecCcccc--c
Confidence            467788999965443311    111  235688999999976543211   222222211 1 22367899995332  2


Q ss_pred             hHHHHHHHHcCCcEEEec
Q 029854          101 AKQVTFHRKKNLQYYEIS  118 (186)
Q Consensus       101 ~~~~~~~~~~~~~~~~~S  118 (186)
                      -....++...+.|+..++
T Consensus       166 G~~l~~~~~~~~Pi~~i~  183 (207)
T d1ls1a2         166 GAALSARHVTGKPIYFAG  183 (207)
T ss_dssp             HHHHHHHHHHCCCEEEEC
T ss_pred             hHHHHHHHHHCCCEEEEe
Confidence            345577788889887775

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=82.77  E-value=0.79  Score=33.60  Aligned_cols=39  Identities=23%  Similarity=0.284  Sum_probs=25.8

Q ss_pred             CCEEEEEeCCCCCCcccChHHHHHHHHcCCcEEEeccCC
Q 029854           83 IPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKS  121 (186)
Q Consensus        83 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~  121 (186)
                      .|+++++||.|........+..+.+...+..++.+||..
T Consensus       215 kP~~~v~Nk~d~~~~e~~~~~~~~~~~~~~~vi~~sa~~  253 (319)
T d1wxqa1         215 KPMVIAANKADAASDEQIKRLVREEEKRGYIVIPTSAAA  253 (319)
T ss_dssp             SCEEEEEECGGGSCHHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred             CchhhhcccccchhhHHHHHHHHHHhhcCCEEEEecHHH
Confidence            689999999986543332333345556677788888763