Citrus Sinensis ID: 029857

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180------
Protein Sequence
MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTLSLRRYR
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHccccEEEcccccccHHHHHccccccccEEEEEEEEEEcccccccccccccccccccccccccccccHHHHHHHHHHccccccEEEEEEEcccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccEEEEEcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHcccccEEEccccccHHHHHHHcccccccEEEEEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHccccEEEEEEEEEEcccEEEEEEEEEcccccccccccccHHHHcHHHccHHHHcccHHHHHHccccccccccccccccccHHHHHcccEEEEccc
Coil and Loop (DISEMBL)
mrflqrvrcweyrqhpsivrvtrptrpdkarrlgykakqgYVVYRVRVrrggrkrpvpkgivygkptnqgvtqlkfqrsKRSVAEERAGRKLGGLKVlnsywinedstykYFEVILVDAAhnairndprinwickpvhkhrelrgltsagkkyrglrgkghlhhkarpsrratwkrnqtlslrryr
Flexible Loop (DISEMBL)
mrflqrvrcweyrqhpsivrvtrptrpdkarrlgykakqgyvvyrvrvrrggrkrpvpkgivygkptnqgvtqlkfqrskrsvaeeragrklgglkvlnsYWINEDSTYKYFEVILVDAAHNairndprinwickpvhkhrelrgltsagkkyrglrgkghlhhkarpsrratwkrnqtlslrryr
Low Complexity Region (SEG)
MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQgyvvyrvrvrrggrkrpvpkgIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTLSLRRYR
Disordered region (IsUnstruct)
***LQRVRCWEYRQHPSIVRVTR******ARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGK*************************KLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLT***************************************
Disordered Region (DISOPRED)
MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGG**********************KFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGL*S*****************ARPSRRATWKRNQTLS*RRYR
Disordered Region (DISEMBL)
MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQ**************AGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRG******************WKRNQTLSLRRYR
Disordered Region (DISPRO)
MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKR*****IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKK********************TWK*NQ*LS*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTLSLRRYR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	186	2.2.26 [Sep-21-2011]
O82528	204	60S ribosomal protein L15	N/A	no	1.0	0.911	0.935	5e-97
O23515	204	60S ribosomal protein L15	yes	no	1.0	0.911	0.892	2e-85
Q8VYF1	204	60S ribosomal protein L15	yes	no	1.0	0.911	0.887	4e-85
O65050	204	60S ribosomal protein L15	N/A	no	1.0	0.911	0.892	2e-84
O65082	204	60S ribosomal protein L15	N/A	no	1.0	0.911	0.892	2e-84
Q8X034	203	60S ribosomal protein L15	N/A	no	0.994	0.911	0.736	6e-73
P54780	204	60S ribosomal protein L15	yes	no	0.994	0.906	0.715	8e-72
P05748	204	60S ribosomal protein L15	yes	no	0.994	0.906	0.715	8e-72
P61314	204	60S ribosomal protein L15	yes	no	0.994	0.906	0.716	4e-71
Q5NVE0	204	60S ribosomal protein L15	yes	no	0.994	0.906	0.716	4e-71

>sp|O82528|RL15_PETHY 60S ribosomal protein L15 OS=Petunia hybrida GN=RPL15 PE=2 SV=1

 Score =  353 bits (905), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 174/186 (93%), Positives = 179/186 (96%)

Query: 1   MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           MRFLQRVRCWEYRQ PSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRV+RGGRKRPVPKG
Sbjct: 19  MRFLQRVRCWEYRQLPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVKRGGRKRPVPKG 78

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
           IVYGKPTNQGVTQLKFQR+KRSVAEERAGRKLGGL+VLNSYWINEDSTYKYFEVILVD A
Sbjct: 79  IVYGKPTNQGVTQLKFQRTKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDQA 138

Query: 121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTL 180
           H AIRNDPRINWIC PVHKHRELRGLTSAGKKYRGLRG+GHLH+KA PSRRA WKRNQTL
Sbjct: 139 HAAIRNDPRINWICNPVHKHRELRGLTSAGKKYRGLRGRGHLHNKAPPSRRANWKRNQTL 198

Query: 181 SLRRYR 186
           SL RYR
Sbjct: 199 SLPRYR 204

Petunia hybrida (taxid: 4102)

>sp|O23515|RL151_ARATH 60S ribosomal protein L15-1 OS=Arabidopsis thaliana GN=RPL15A PE=2 SV=1

 Score =  314 bits (805), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 166/186 (89%), Positives = 177/186 (95%)

Query: 1   MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           MRFLQRVRCWEYRQ PSIVR+ RPTRPDKARRLGYKAKQG+VVYRVRVRRGGRKRPVPKG
Sbjct: 19  MRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFVVYRVRVRRGGRKRPVPKG 78

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
           IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL+V+NSYW+NEDSTYKY+E+ILVD A
Sbjct: 79  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIILVDPA 138

Query: 121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTL 180
           HNA+RNDPRINWIC PVHKHRELRGLTS GKK RGLRGKGH +HK RPSRRATWK+N +L
Sbjct: 139 HNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHNNHKNRPSRRATWKKNNSL 198

Query: 181 SLRRYR 186
           SLRRYR
Sbjct: 199 SLRRYR 204

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VYF1|RL152_ARATH 60S ribosomal protein L15-2 OS=Arabidopsis thaliana GN=RPL15B PE=2 SV=1

 Score =  313 bits (802), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 165/186 (88%), Positives = 177/186 (95%)

Query: 1   MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           MRFLQRVRCWEYRQ PSIVR+ RPTRPDKARRLGYKAKQG+VVYRVRVRRGGRKRPVPKG
Sbjct: 19  MRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFVVYRVRVRRGGRKRPVPKG 78

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
           IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL+V+NSYW+NEDSTYKY+E+ILVD A
Sbjct: 79  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIILVDPA 138

Query: 121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTL 180
           HNA+RNDPRINWIC PVHKHRELRGLTS GKK RGLRGKGH +HK RPSRRATWK+N ++
Sbjct: 139 HNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHNNHKNRPSRRATWKKNNSI 198

Query: 181 SLRRYR 186
           SLRRYR
Sbjct: 199 SLRRYR 204

Arabidopsis thaliana (taxid: 3702)

>sp|O65050|RL15A_PICMA 60S ribosomal protein L15-1 OS=Picea mariana GN=SB61 PE=2 SV=1

 Score =  311 bits (796), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 166/186 (89%), Positives = 177/186 (95%)

Query: 1   MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           MRFLQRVRCWE+RQ P IVRVTRP+RPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG
Sbjct: 19  MRFLQRVRCWEFRQLPGIVRVTRPSRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 78

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
           IVYGKP NQG+TQLKFQRS RSVAEERAGRKLGGL+VLNSYWIN+DSTYKY+E+ILVD A
Sbjct: 79  IVYGKPKNQGITQLKFQRSLRSVAEERAGRKLGGLRVLNSYWINQDSTYKYYEIILVDQA 138

Query: 121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTL 180
           H+AIR DPRINWIC  VHKHRELRGLTSAGKKYRGLRG+GHL+HKARPS+RATWKRN TL
Sbjct: 139 HSAIRKDPRINWICNAVHKHRELRGLTSAGKKYRGLRGRGHLYHKARPSKRATWKRNNTL 198

Query: 181 SLRRYR 186
           SLRRYR
Sbjct: 199 SLRRYR 204

Picea mariana (taxid: 3335)

>sp|O65082|RL15B_PICMA 60S ribosomal protein L15-2 OS=Picea mariana GN=SB62 PE=2 SV=1

 Score =  311 bits (796), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 166/186 (89%), Positives = 175/186 (94%)

Query: 1   MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           MRFLQRVRCWEYRQ P IVR+T PTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG
Sbjct: 19  MRFLQRVRCWEYRQLPGIVRITHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 78

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
           IVYGKP NQG+TQLKFQRS RSVAEERAGRKLGGL+VLNSYWIN+DSTYKY+EV+LVD A
Sbjct: 79  IVYGKPKNQGITQLKFQRSLRSVAEERAGRKLGGLRVLNSYWINQDSTYKYYEVVLVDQA 138

Query: 121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTL 180
           H  IRNDPRINWIC  VHKHRELRGLTSAGKKYRGLRG+GHL+HKARPS+RATWKRN TL
Sbjct: 139 HTVIRNDPRINWICNAVHKHRELRGLTSAGKKYRGLRGRGHLYHKARPSKRATWKRNNTL 198

Query: 181 SLRRYR 186
           SLRRYR
Sbjct: 199 SLRRYR 204

Picea mariana (taxid: 3335)

>sp|Q8X034|RL15_NEUCR 60S ribosomal protein L15 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rpl-15 PE=3 SV=1

 Score =  273 bits (697), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 137/186 (73%), Positives = 151/186 (81%), Gaps = 1/186 (0%)

Query: 1   MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           +RFL RVRCWE RQ   I R +RP+RPDKARRLGYKAKQGYV+YR RVRRGGRK+PVPKG
Sbjct: 19  VRFLLRVRCWELRQLNVIHRASRPSRPDKARRLGYKAKQGYVIYRARVRRGGRKKPVPKG 78

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
             YGKPTNQGV QLK+QRS +S AEER GR+   L+VLNSYWIN+DSTYKYFEVILVD  
Sbjct: 79  ATYGKPTNQGVNQLKYQRSLKSTAEERVGRRCANLRVLNSYWINQDSTYKYFEVILVDPQ 138

Query: 121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTL 180
           H AIR DPRINWI  PVHKHRE RGLTS GK+ RGL  KGH ++K R  RR TWKR+ TL
Sbjct: 139 HKAIRRDPRINWIVNPVHKHRESRGLTSTGKRSRGL-NKGHRYNKTRAGRRKTWKRHNTL 197

Query: 181 SLRRYR 186
           SL RYR
Sbjct: 198 SLWRYR 203

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|P54780|RL15B_YEAST 60S ribosomal protein L15-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL15B PE=1 SV=2

 Score =  269 bits (688), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 133/186 (71%), Positives = 147/186 (79%), Gaps = 1/186 (0%)

Query: 1   MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           +RFLQRVR WEYRQ   I R  RPTRPDKARRLGYKAKQG+V+YRVRVRRG RKRPVPKG
Sbjct: 19  LRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFVIYRVRVRRGNRKRPVPKG 78

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
             YGKPTNQGV +LK+QRS R+ AEER GR+   L+VLNSYW+N+DSTYKYFEVILVD  
Sbjct: 79  ATYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYWVNQDSTYKYFEVILVDPQ 138

Query: 121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTL 180
           H AIR D R NWIC PVHKHRE RGLT+ GKK RG+  KGH  +  +  RR TWKR  TL
Sbjct: 139 HKAIRRDARYNWICNPVHKHREARGLTATGKKSRGI-NKGHKFNNTKAGRRKTWKRQNTL 197

Query: 181 SLRRYR 186
           SL RYR
Sbjct: 198 SLWRYR 203

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P05748|RL15A_YEAST 60S ribosomal protein L15-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL15A PE=1 SV=3

 Score =  269 bits (687), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 133/186 (71%), Positives = 147/186 (79%), Gaps = 1/186 (0%)

Query: 1   MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           +RFLQRVR WEYRQ   I R  RPTRPDKARRLGYKAKQG+V+YRVRVRRG RKRPVPKG
Sbjct: 19  LRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFVIYRVRVRRGNRKRPVPKG 78

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
             YGKPTNQGV +LK+QRS R+ AEER GR+   L+VLNSYW+N+DSTYKYFEVILVD  
Sbjct: 79  ATYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYWVNQDSTYKYFEVILVDPQ 138

Query: 121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTL 180
           H AIR D R NWIC PVHKHRE RGLT+ GKK RG+  KGH  +  +  RR TWKR  TL
Sbjct: 139 HKAIRRDARYNWICDPVHKHREARGLTATGKKSRGI-NKGHKFNNTKAGRRKTWKRQNTL 197

Query: 181 SLRRYR 186
           SL RYR
Sbjct: 198 SLWRYR 203

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P61314|RL15_RAT 60S ribosomal protein L15 OS=Rattus norvegicus GN=Rpl15 PE=1 SV=2

 Score =  266 bits (681), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 134/187 (71%), Positives = 149/187 (79%), Gaps = 2/187 (1%)

Query: 1   MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           MRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQGYV+YR+RVRRGGRKRPVPKG
Sbjct: 19  MRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKG 78

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
             YGKP + GV QLKF RS +SVAEERAGR  G L+VLNSYW+ EDSTYK+FEVIL+D  
Sbjct: 79  ATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPF 138

Query: 121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNQT 179
           H AIR +P   WI KPVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W+R  T
Sbjct: 139 HKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWRRRNT 197

Query: 180 LSLRRYR 186
           L L RYR
Sbjct: 198 LQLHRYR 204

Rattus norvegicus (taxid: 10116)

>sp|Q5NVE0|RL15_PONAB 60S ribosomal protein L15 OS=Pongo abelii GN=RPL15 PE=2 SV=3

 Score =  266 bits (681), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 134/187 (71%), Positives = 149/187 (79%), Gaps = 2/187 (1%)

Query: 1   MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           MRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQGYV+YR+RVRRGGRKRPVPKG
Sbjct: 19  MRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKG 78

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
             YGKP + GV QLKF RS +SVAEERAGR  G L+VLNSYW+ EDSTYK+FEVIL+D  
Sbjct: 79  ATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPF 138

Query: 121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNQT 179
           H AIR +P   WI KPVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W+R  T
Sbjct: 139 HKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWRRRNT 197

Query: 180 LSLRRYR 186
           L L RYR
Sbjct: 198 LQLHRYR 204

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
255539825	204	ribosomal protein L15, putative [Ricinus	1.0	0.911	0.983	1e-102
224063657	204	predicted protein [Populus trichocarpa]	1.0	0.911	0.978	1e-101
224074171	204	predicted protein [Populus trichocarpa]	1.0	0.911	0.951	1e-98
192913004	204	ribosomal protein L15 [Elaeis guineensis	1.0	0.911	0.946	4e-98
6094014	204	RecName: Full=60S ribosomal protein L15	1.0	0.911	0.935	3e-95
194707842	204	unknown [Zea mays] gi|414886708|tpg|DAA6	1.0	0.911	0.897	3e-94
48596903	204	ribosomal protein [Bromus inermis]	1.0	0.911	0.887	3e-94
226528613	204	60S ribosomal protein L15 [Zea mays] gi|	1.0	0.911	0.897	7e-94
225453500	204	PREDICTED: 60S ribosomal protein L15-lik	1.0	0.911	0.973	1e-93
359489265	206	PREDICTED: 60S ribosomal protein L15-lik	1.0	0.902	0.973	1e-93

>gi|255539825|ref|XP_002510977.1| ribosomal protein L15, putative [Ricinus communis] gi|223550092|gb|EEF51579.1| ribosomal protein L15, putative [Ricinus communis]

 Score =  374 bits (961), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 183/186 (98%), Positives = 185/186 (99%)

Query: 1   MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARR+GYKAKQGYV+YRVRVRRGGRKRPVPKG
Sbjct: 19  MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRMGYKAKQGYVIYRVRVRRGGRKRPVPKG 78

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
           IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA
Sbjct: 79  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 138

Query: 121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTL 180
           HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRN TL
Sbjct: 139 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNNTL 198

Query: 181 SLRRYR 186
           SLRRYR
Sbjct: 199 SLRRYR 204

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063657|ref|XP_002301250.1| predicted protein [Populus trichocarpa] gi|224137010|ref|XP_002327000.1| predicted protein [Populus trichocarpa] gi|222835315|gb|EEE73750.1| predicted protein [Populus trichocarpa] gi|222842976|gb|EEE80523.1| predicted protein [Populus trichocarpa]

 Score =  372 bits (954), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 182/186 (97%), Positives = 184/186 (98%)

Query: 1   MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           MRFLQRVRCWEYRQHPSIVRVT PTRPDKARRLGYKAKQGYVVYR+RVRRGGRKRPVPKG
Sbjct: 19  MRFLQRVRCWEYRQHPSIVRVTHPTRPDKARRLGYKAKQGYVVYRIRVRRGGRKRPVPKG 78

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
           IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA
Sbjct: 79  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 138

Query: 121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTL 180
           HNAIRNDPRINWIC PVHKHRELRGLTSAGKKYRGLRG+GHLHHKARPSRRATWKRNQTL
Sbjct: 139 HNAIRNDPRINWICNPVHKHRELRGLTSAGKKYRGLRGRGHLHHKARPSRRATWKRNQTL 198

Query: 181 SLRRYR 186
           SLRRYR
Sbjct: 199 SLRRYR 204

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074171|ref|XP_002304285.1| predicted protein [Populus trichocarpa] gi|224138624|ref|XP_002326649.1| predicted protein [Populus trichocarpa] gi|118484142|gb|ABK93954.1| unknown [Populus trichocarpa] gi|222833971|gb|EEE72448.1| predicted protein [Populus trichocarpa] gi|222841717|gb|EEE79264.1| predicted protein [Populus trichocarpa]

 Score =  363 bits (933), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 177/186 (95%), Positives = 181/186 (97%)

Query: 1   MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           MRFLQRVRCWEYRQHPSIVRVT PTRPDKARRLGYKAKQGYVVYR+RVRRGGRKRPVPKG
Sbjct: 19  MRFLQRVRCWEYRQHPSIVRVTHPTRPDKARRLGYKAKQGYVVYRIRVRRGGRKRPVPKG 78

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
           IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL+VLNSYWINEDSTYKYFEVILVD A
Sbjct: 79  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDVA 138

Query: 121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTL 180
           HNAIRNDPRINW+C PVHKHRELRGLTSAGKKYRGLRG+GHLHHKARPSRRA WKRN TL
Sbjct: 139 HNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGRGHLHHKARPSRRANWKRNNTL 198

Query: 181 SLRRYR 186
           SLRRYR
Sbjct: 199 SLRRYR 204

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|192913004|gb|ACF06610.1| ribosomal protein L15 [Elaeis guineensis]

 Score =  362 bits (928), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 176/186 (94%), Positives = 182/186 (97%)

Query: 1   MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           MRFLQRVRCWEYRQ PSIVRVTRPTRPDKARRLGYKAKQGYV+YR+RVRRGGRKRPVPKG
Sbjct: 19  MRFLQRVRCWEYRQLPSIVRVTRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKG 78

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
           IVYGKP NQG+TQLKFQR+KRSVAEERAGRKLGGL+VLNSYW+NEDSTYKYFEVILVDAA
Sbjct: 79  IVYGKPKNQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEVILVDAA 138

Query: 121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTL 180
           HNAIRNDPRINWICK VHKHRELRGLTSAGKKYRGLRGKGHLHHK RPSRRATWKRNQTL
Sbjct: 139 HNAIRNDPRINWICKGVHKHRELRGLTSAGKKYRGLRGKGHLHHKVRPSRRATWKRNQTL 198

Query: 181 SLRRYR 186
           SLRRYR
Sbjct: 199 SLRRYR 204

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6094014|sp|O82528.1|RL15_PETHY RecName: Full=60S ribosomal protein L15 gi|3608479|gb|AAD13389.1| ribosomal protein L15 [Petunia x hybrida]

 Score =  353 bits (905), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 174/186 (93%), Positives = 179/186 (96%)

Query: 1   MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           MRFLQRVRCWEYRQ PSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRV+RGGRKRPVPKG
Sbjct: 19  MRFLQRVRCWEYRQLPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVKRGGRKRPVPKG 78

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
           IVYGKPTNQGVTQLKFQR+KRSVAEERAGRKLGGL+VLNSYWINEDSTYKYFEVILVD A
Sbjct: 79  IVYGKPTNQGVTQLKFQRTKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDQA 138

Query: 121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTL 180
           H AIRNDPRINWIC PVHKHRELRGLTSAGKKYRGLRG+GHLH+KA PSRRA WKRNQTL
Sbjct: 139 HAAIRNDPRINWICNPVHKHRELRGLTSAGKKYRGLRGRGHLHNKAPPSRRANWKRNQTL 198

Query: 181 SLRRYR 186
           SL RYR
Sbjct: 199 SLPRYR 204

Source: Petunia x hybrida

Species: Petunia x hybrida

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194707842|gb|ACF88005.1| unknown [Zea mays] gi|414886708|tpg|DAA62722.1| TPA: ribosomal protein L15 [Zea mays]

 Score =  349 bits (896), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 167/186 (89%), Positives = 179/186 (96%)

Query: 1   MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           MRF+QRVRCWEYRQ P+IVR+TRPTRPDKARRLGYKAKQGYVVYRVRV+RGGRKRPVPKG
Sbjct: 19  MRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVKRGGRKRPVPKG 78

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
           IVYGKP +QG+TQLKFQR+KRSVAEERAGRKLGGL+VLNSYW+NEDSTYKYFE+ILVD A
Sbjct: 79  IVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIILVDVA 138

Query: 121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTL 180
           H AIRNDPRINW+C PVHKHRELRGLTSAGKK+RGLRGKGH HHK RPSRRATWKRNQTL
Sbjct: 139 HTAIRNDPRINWLCNPVHKHRELRGLTSAGKKFRGLRGKGHTHHKNRPSRRATWKRNQTL 198

Query: 181 SLRRYR 186
           SLRRYR
Sbjct: 199 SLRRYR 204

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|48596903|dbj|BAD22764.1| ribosomal protein [Bromus inermis]

 Score =  349 bits (895), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 165/186 (88%), Positives = 181/186 (97%)

Query: 1   MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           MRF+QRVRCWEYRQ P+IVR+TRPTRPD+ARRLG+KAKQGYVVYR+RVRRGGRKRPVPKG
Sbjct: 19  MRFVQRVRCWEYRQQPAIVRITRPTRPDRARRLGFKAKQGYVVYRIRVRRGGRKRPVPKG 78

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
           IVYGKP +QG+TQLKFQR+KRSVAEERAGR+LGGL+VLNSYW+NEDSTYKYFEVILVD A
Sbjct: 79  IVYGKPKHQGITQLKFQRNKRSVAEERAGRRLGGLRVLNSYWVNEDSTYKYFEVILVDVA 138

Query: 121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTL 180
           HNA+RNDPRINW+CKPVHKHRELRGLTSAGKK+RGLRGKGH HHK RPSRRATWKRNQT+
Sbjct: 139 HNAVRNDPRINWLCKPVHKHRELRGLTSAGKKFRGLRGKGHRHHKNRPSRRATWKRNQTV 198

Query: 181 SLRRYR 186
           SLRRYR
Sbjct: 199 SLRRYR 204

Source: Bromus inermis

Species: Bromus inermis

Genus: Bromus

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226528613|ref|NP_001148602.1| 60S ribosomal protein L15 [Zea mays] gi|194698344|gb|ACF83256.1| unknown [Zea mays] gi|195620698|gb|ACG32179.1| 60S ribosomal protein L15 [Zea mays] gi|195637452|gb|ACG38194.1| 60S ribosomal protein L15 [Zea mays] gi|414883699|tpg|DAA59713.1| TPA: ribosomal protein L15 [Zea mays]

 Score =  348 bits (892), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 167/186 (89%), Positives = 178/186 (95%)

Query: 1   MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           MRF+QRVRCWEYRQ PSIVR+TRPTRPDKARRLGYKAKQGYVVYRVRV+RGGRKRPVPKG
Sbjct: 19  MRFVQRVRCWEYRQQPSIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVKRGGRKRPVPKG 78

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
           IVYGKP +QG+TQLKFQR+KRSVAEERAGRKLGGL+VLNSYW+NEDSTYKYFE+ILVD A
Sbjct: 79  IVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIILVDVA 138

Query: 121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTL 180
           H AI+ DPRINW+C PVHKHRELRGLTSAGKKYRGLRGKGH HHK RPSRRATWKRNQTL
Sbjct: 139 HKAIKTDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHTHHKNRPSRRATWKRNQTL 198

Query: 181 SLRRYR 186
           SLRRYR
Sbjct: 199 SLRRYR 204

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453500|ref|XP_002277836.1| PREDICTED: 60S ribosomal protein L15-like isoform 1 [Vitis vinifera]

 Score =  347 bits (891), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 181/186 (97%), Positives = 184/186 (98%)

Query: 1   MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV+YRVRVRRGGRKRPVPKG
Sbjct: 19  MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVIYRVRVRRGGRKRPVPKG 78

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
           IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKY+E+ILVDAA
Sbjct: 79  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYYEIILVDAA 138

Query: 121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTL 180
           HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH HHKARPSRRATWKRN TL
Sbjct: 139 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHRHHKARPSRRATWKRNNTL 198

Query: 181 SLRRYR 186
           SLRRYR
Sbjct: 199 SLRRYR 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489265|ref|XP_003633903.1| PREDICTED: 60S ribosomal protein L15-like isoform 2 [Vitis vinifera] gi|297734550|emb|CBI16601.3| unnamed protein product [Vitis vinifera]

 Score =  347 bits (890), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 181/186 (97%), Positives = 184/186 (98%)

Query: 1   MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV+YRVRVRRGGRKRPVPKG
Sbjct: 21  MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVIYRVRVRRGGRKRPVPKG 80

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
           IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKY+E+ILVDAA
Sbjct: 81  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYYEIILVDAA 140

Query: 121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTL 180
           HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH HHKARPSRRATWKRN TL
Sbjct: 141 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHRHHKARPSRRATWKRNNTL 200

Query: 181 SLRRYR 186
           SLRRYR
Sbjct: 201 SLRRYR 206

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
TAIR|locus:2129081	204	AT4G16720 [Arabidopsis thalian	1.0	0.911	0.784	3.4e-77
TAIR|locus:2130923	204	AT4G17390 [Arabidopsis thalian	1.0	0.911	0.779	5.5e-77
CGD|CAL0005866	204	RPL15A [Candida albicans (taxi	0.994	0.906	0.634	5.7e-59
SGD|S000004728	204	RPL15B "Ribosomal 60S subunit	0.994	0.906	0.618	1.7e-57
SGD|S000004019	204	RPL15A "Ribosomal 60S subunit	0.994	0.906	0.618	2.2e-57
UNIPROTKB|G4MNX1	203	MGG_11785 "Ribosomal protein L	0.994	0.911	0.623	5.9e-57
UNIPROTKB|G5E686	204	G5E686 "Ribosomal protein L15"	0.994	0.906	0.614	1.6e-56
UNIPROTKB|F1NQG5	206	RPL15 "Ribosomal protein L15"	0.994	0.898	0.614	2e-56
UNIPROTKB|E1BK63	204	E1BK63 "Ribosomal protein L15"	0.994	0.906	0.614	2e-56
UNIPROTKB|Q5EAD6	204	RPL15 "60S ribosomal protein L	0.994	0.906	0.614	2e-56

TAIR|locus:2129081 AT4G16720 [Arabidopsis thaliana (taxid:3702)]

 Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
 Identities = 146/186 (78%), Positives = 156/186 (83%)

Query:     1 MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXX 60
             MRFLQRVRCWEYRQ PSIVR+ RPTRPDKARRLGYKAKQ                     
Sbjct:    19 MRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFVVYRVRVRRGGRKRPVPKG 78

Query:    61 IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
             IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL+V+NSYW+NEDSTYKY+E+ILVD A
Sbjct:    79 IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIILVDPA 138

Query:   121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTL 180
             HNA+RNDPRINWIC PVHKHRELRGLTS GKK RGLRGKGH +HK RPSRRATWK+N +L
Sbjct:   139 HNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHNNHKNRPSRRATWKKNNSL 198

Query:   181 SLRRYR 186
             SLRRYR
Sbjct:   199 SLRRYR 204

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2130923 AT4G17390 [Arabidopsis thaliana (taxid:3702)]

 Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
 Identities = 145/186 (77%), Positives = 156/186 (83%)

Query:     1 MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXX 60
             MRFLQRVRCWEYRQ PSIVR+ RPTRPDKARRLGYKAKQ                     
Sbjct:    19 MRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFVVYRVRVRRGGRKRPVPKG 78

Query:    61 IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
             IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL+V+NSYW+NEDSTYKY+E+ILVD A
Sbjct:    79 IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIILVDPA 138

Query:   121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTL 180
             HNA+RNDPRINWIC PVHKHRELRGLTS GKK RGLRGKGH +HK RPSRRATWK+N ++
Sbjct:   139 HNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHNNHKNRPSRRATWKKNNSI 198

Query:   181 SLRRYR 186
             SLRRYR
Sbjct:   199 SLRRYR 204

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

CGD|CAL0005866 RPL15A [Candida albicans (taxid:5476)]

 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 118/186 (63%), Positives = 132/186 (70%)

Query:     1 MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXX 60
             MRFL RVRCWEYRQ   I R +RP+RPDKARRLGYKAKQ                     
Sbjct:    19 MRFLYRVRCWEYRQKNVIHRASRPSRPDKARRLGYKAKQGFVIYRIRVRRGGRKRPVPKG 78

Query:    61 IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
               YGKPTNQGV QLK+Q+S RS AEER GR+   L+VLNSYW+N+DSTYKYFEVILVD +
Sbjct:    79 ATYGKPTNQGVNQLKYQKSLRSTAEERVGRRASNLRVLNSYWVNQDSTYKYFEVILVDPS 138

Query:   121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTL 180
             H AIR D R NWI  PVHKHRE RGLTSAGKK RG+  KGHL +K +  RR TWK++ TL
Sbjct:   139 HKAIRRDARYNWIVNPVHKHREARGLTSAGKKSRGIN-KGHLFNKTKAGRRHTWKKHNTL 197

Query:   181 SLRRYR 186
             SL RYR
Sbjct:   198 SLWRYR 203

GO:0005730 "nucleolus" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0002181 "cytoplasmic translation" evidence=IEA

SGD|S000004728 RPL15B "Ribosomal 60S subunit protein L15B" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
 Identities = 115/186 (61%), Positives = 127/186 (68%)

Query:     1 MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXX 60
             +RFLQRVR WEYRQ   I R  RPTRPDKARRLGYKAKQ                     
Sbjct:    19 LRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFVIYRVRVRRGNRKRPVPKG 78

Query:    61 IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
               YGKPTNQGV +LK+QRS R+ AEER GR+   L+VLNSYW+N+DSTYKYFEVILVD  
Sbjct:    79 ATYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYWVNQDSTYKYFEVILVDPQ 138

Query:   121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTL 180
             H AIR D R NWIC PVHKHRE RGLT+ GKK RG+  KGH  +  +  RR TWKR  TL
Sbjct:   139 HKAIRRDARYNWICNPVHKHREARGLTATGKKSRGIN-KGHKFNNTKAGRRKTWKRQNTL 197

Query:   181 SLRRYR 186
             SL RYR
Sbjct:   198 SLWRYR 203

GO:0003735 "structural constituent of ribosome" evidence=IEA;IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003723 "RNA binding" evidence=IDA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0002181 "cytoplasmic translation" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

SGD|S000004019 RPL15A "Ribosomal 60S subunit protein L15A" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
 Identities = 115/186 (61%), Positives = 127/186 (68%)

Query:     1 MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXX 60
             +RFLQRVR WEYRQ   I R  RPTRPDKARRLGYKAKQ                     
Sbjct:    19 LRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFVIYRVRVRRGNRKRPVPKG 78

Query:    61 IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
               YGKPTNQGV +LK+QRS R+ AEER GR+   L+VLNSYW+N+DSTYKYFEVILVD  
Sbjct:    79 ATYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYWVNQDSTYKYFEVILVDPQ 138

Query:   121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTL 180
             H AIR D R NWIC PVHKHRE RGLT+ GKK RG+  KGH  +  +  RR TWKR  TL
Sbjct:   139 HKAIRRDARYNWICDPVHKHREARGLTATGKKSRGIN-KGHKFNNTKAGRRKTWKRQNTL 197

Query:   181 SLRRYR 186
             SL RYR
Sbjct:   198 SLWRYR 203

GO:0003735 "structural constituent of ribosome" evidence=IEA;IDA

GO:0002181 "cytoplasmic translation" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0003723 "RNA binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|G4MNX1 MGG_11785 "Ribosomal protein L15" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
 Identities = 116/186 (62%), Positives = 130/186 (69%)

Query:     1 MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXX 60
             +RFL RVRCWE RQ   I R +RP+RPDKARRLGYKAKQ                     
Sbjct:    19 LRFLLRVRCWELRQLNVIHRASRPSRPDKARRLGYKAKQGYVIYRVRVRRGGRKRPVPKG 78

Query:    61 IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
               YGKPTNQGV QLK+QRS ++ AEER GR+   L+VLNSYWIN+DSTYKY+EVILVD  
Sbjct:    79 ATYGKPTNQGVNQLKYQRSLKATAEERVGRRCANLRVLNSYWINQDSTYKYYEVILVDPQ 138

Query:   121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTL 180
             H AIR DPRINWI  PVHKHRE RGLT+ GKK RGL  KGH ++K    RR TWKR+ TL
Sbjct:   139 HKAIRIDPRINWIVNPVHKHRESRGLTATGKKSRGLN-KGHRYNKTTAGRRKTWKRHNTL 197

Query:   181 SLRRYR 186
             SL RYR
Sbjct:   198 SLWRYR 203

GO:0043581 "mycelium development" evidence=IEP

UNIPROTKB|G5E686 G5E686 "Ribosomal protein L15" [Bos taurus (taxid:9913)]

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 115/187 (61%), Positives = 128/187 (68%)

Query:     1 MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXX 60
             MRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                     
Sbjct:    19 MRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKG 78

Query:    61 IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
               YGKP + GV QLKF RS +SVAEERAGR  G L+VLNSYW+ EDSTYK+FEVIL+D  
Sbjct:    79 ATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPF 138

Query:   121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNQT 179
             H AIR +P   WI KPVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W+R  T
Sbjct:   139 HKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTVGGSRRAAWRRRNT 197

Query:   180 LSLRRYR 186
             L L RYR
Sbjct:   198 LQLHRYR 204

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|F1NQG5 RPL15 "Ribosomal protein L15" [Gallus gallus (taxid:9031)]

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 115/187 (61%), Positives = 128/187 (68%)

Query:     1 MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXX 60
             MRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                     
Sbjct:    21 MRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRVRVRRGGRKRPVPKG 80

Query:    61 IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
               YGKP + GV QLKF RS +SVAEERAGR  G L+VLNSYW+ EDSTYK+FEVIL+D  
Sbjct:    81 ATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPF 140

Query:   121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNQT 179
             H AIR +P   WI KPVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W+R  T
Sbjct:   141 HKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWRRRNT 199

Query:   180 LSLRRYR 186
             L L RYR
Sbjct:   200 LQLHRYR 206

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

UNIPROTKB|E1BK63 E1BK63 "Ribosomal protein L15" [Bos taurus (taxid:9913)]

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 115/187 (61%), Positives = 128/187 (68%)

Query:     1 MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXX 60
             MRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                     
Sbjct:    19 MRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKHPVPKG 78

Query:    61 IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
               YGKP + GV QLKF RS +SVAEERAGR  G L+VLNSYW+ EDSTYK+FEVIL+D  
Sbjct:    79 ATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPF 138

Query:   121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNQT 179
             H AIR +P   WI KPVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W+R  T
Sbjct:   139 HKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWRRRNT 197

Query:   180 LSLRRYR 186
             L L RYR
Sbjct:   198 LQLHRYR 204

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q5EAD6 RPL15 "60S ribosomal protein L15" [Bos taurus (taxid:9913)]

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 115/187 (61%), Positives = 128/187 (68%)

Query:     1 MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXX 60
             MRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                     
Sbjct:    19 MRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKG 78

Query:    61 IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
               YGKP + GV QLKF RS +SVAEERAGR  G L+VLNSYW+ EDSTYK+FEVIL+D  
Sbjct:    79 ATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPF 138

Query:   121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNQT 179
             H AIR +P   WI KPVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W+R  T
Sbjct:   139 HKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWRRRNT 197

Query:   180 LSLRRYR 186
             L L RYR
Sbjct:   198 LQLHRYR 204

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P91374	RL15_CAEEL	No assigned EC number	0.6203	0.9946	0.9068	yes	no
P30736	RL15_CHITE	No assigned EC number	0.6363	0.9946	0.9068	N/A	no
P54780	RL15B_YEAST	No assigned EC number	0.7150	0.9946	0.9068	yes	no
Q7T3M9	RL15_SINKN	No assigned EC number	0.7165	0.9946	0.9068	N/A	no
O74895	RL15A_SCHPO	No assigned EC number	0.7010	0.9731	0.9004	yes	no
A6VIT8	RL15E_METM7	No assigned EC number	0.5170	0.9354	0.8969	yes	no
Q4R5B2	RL15_MACFA	No assigned EC number	0.7165	0.9946	0.9068	N/A	no
Q7T2N5	RL15_TACFU	No assigned EC number	0.7165	0.9946	0.9068	N/A	no
Q8X034	RL15_NEUCR	No assigned EC number	0.7365	0.9946	0.9113	N/A	no
Q7T3P0	RL15_HYPNO	No assigned EC number	0.7219	0.9946	0.9068	N/A	no
P61368	RL15_HYDVU	No assigned EC number	0.7112	0.9946	0.9068	N/A	no
P61369	RL15_SILAS	No assigned EC number	0.7112	0.9946	0.9068	N/A	no
Q9US22	RL15B_SCHPO	No assigned EC number	0.7010	0.9731	0.9004	yes	no
P61367	RL15_EPICO	No assigned EC number	0.7219	0.9946	0.9068	N/A	no
E2QXF3	RL15_CANFA	No assigned EC number	0.7165	0.9946	0.9068	yes	no
P51417	RL15_CHICK	No assigned EC number	0.7333	0.8763	0.9878	no	no
Q8U2F9	RL15E_PYRFU	No assigned EC number	0.5470	0.9032	0.8659	yes	no
O13418	RL15_ASPNG	No assigned EC number	0.6989	0.9946	0.9113	yes	no
O65082	RL15B_PICMA	No assigned EC number	0.8924	1.0	0.9117	N/A	no
Q7T3N3	RL15_PARDA	No assigned EC number	0.7058	0.9946	0.9068	N/A	no
O82528	RL15_PETHY	No assigned EC number	0.9354	1.0	0.9117	N/A	no
O82712	RL15_QUESU	No assigned EC number	0.5376	0.9838	0.9104	N/A	no
Q90YV2	RL15_ICTPU	No assigned EC number	0.7272	0.9946	0.9068	N/A	no
Q7T3N1	RL15_MYLPI	No assigned EC number	0.7219	0.9946	0.9068	N/A	no
Q7T3N9	RL15_CARAU	No assigned EC number	0.7112	0.9946	0.9068	N/A	no
Q7T3N8	RL15_CTEID	No assigned EC number	0.7219	0.9946	0.9068	N/A	no
B8D6C6	RL15E_DESK1	No assigned EC number	0.5414	0.8333	0.7045	yes	no
P61313	RL15_HUMAN	No assigned EC number	0.7165	0.9946	0.9068	yes	no
Q7T3N2	RL15_MONAL	No assigned EC number	0.7165	0.9946	0.9068	N/A	no
Q9CZM2	RL15_MOUSE	No assigned EC number	0.7165	0.9946	0.9068	yes	no
Q86K01	RL15_DICDI	No assigned EC number	0.6951	1.0	0.9073	yes	no
Q7T3N7	RL15_CYPCA	No assigned EC number	0.7112	0.9946	0.9068	N/A	no
Q7T3N6	RL15_HYPMO	No assigned EC number	0.7165	0.9946	0.9068	N/A	no
P61314	RL15_RAT	No assigned EC number	0.7165	0.9946	0.9068	yes	no
Q9XYC2	RL15_ORCLI	No assigned EC number	0.6397	1.0	0.9117	N/A	no
Q22A30	RL15_TETTS	No assigned EC number	0.6505	1.0	0.9117	N/A	no
O23515	RL151_ARATH	No assigned EC number	0.8924	1.0	0.9117	yes	no
A9A7T0	RL15E_METM6	No assigned EC number	0.5170	0.9354	0.8969	yes	no
P05748	RL15A_YEAST	No assigned EC number	0.7150	0.9946	0.9068	yes	no
Q7T3N4	RL15_MEGAM	No assigned EC number	0.7219	0.9946	0.9068	N/A	no
Q8VYF1	RL152_ARATH	No assigned EC number	0.8870	1.0	0.9117	yes	no
Q5EAD6	RL15_BOVIN	No assigned EC number	0.7165	0.9946	0.9068	yes	no
P52818	RL15_ANOGA	No assigned EC number	0.6956	0.8602	0.7843	yes	no
Q7T2N4	RL15_SILME	No assigned EC number	0.7165	0.9946	0.9068	N/A	no
O17445	RL15_DROME	No assigned EC number	0.6577	0.9946	0.9068	yes	no
P79324	RL15_PIG	No assigned EC number	0.7077	0.8172	0.9934	no	no
Q7T3P1	RL15_ANGJA	No assigned EC number	0.7005	0.9946	0.9068	N/A	no
Q5NVE0	RL15_PONAB	No assigned EC number	0.7165	0.9946	0.9068	yes	no
O65050	RL15A_PICMA	No assigned EC number	0.8924	1.0	0.9117	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	186
pfam00827	192	pfam00827, Ribosomal_L15e, Ribosomal L15	1e-105
PTZ00026	204	PTZ00026, PTZ00026, 60S ribosomal protein L15; Pro	1e-101
COG1632	195	COG1632, RPL15A, Ribosomal protein L15E [Translati	8e-65
PRK04243	196	PRK04243, PRK04243, 50S ribosomal protein L15e; Va	1e-62

>gnl|CDD|144426 pfam00827, Ribosomal_L15e, Ribosomal L15

 Score =  300 bits (770), Expect = e-105
 Identities = 135/175 (77%), Positives = 147/175 (84%)

Query: 1   MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           MRFL RVRCWEYRQ P+IVRV RPTRPDKARRLGYKAKQGYV+YRVRVRRGGRKRP PKG
Sbjct: 18  MRFLLRVRCWEYRQLPAIVRVERPTRPDKARRLGYKAKQGYVIYRVRVRRGGRKRPRPKG 77

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
             YGKP   GV +LK  +S +S+AEERAGRK   L+VLNSYW+ +D TYKY+EVILVD +
Sbjct: 78  GRYGKPKRMGVNKLKPAKSLQSIAEERAGRKCPNLRVLNSYWVGQDGTYKYYEVILVDPS 137

Query: 121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWK 175
           H AIRNDPRINWICKPVHKHRE RGLTSAG+K RGLRGKGH   K RPS RA WK
Sbjct: 138 HPAIRNDPRINWICKPVHKHREFRGLTSAGRKSRGLRGKGHGTEKTRPSIRANWK 192

Length = 192

>gnl|CDD|185402 PTZ00026, PTZ00026, 60S ribosomal protein L15; Provisional

 Score =  289 bits (741), Expect = e-101
 Identities = 141/186 (75%), Positives = 156/186 (83%)

Query: 1   MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           MRFL RVR WEYRQ P I RV+RPTRPDKARRLGYKAKQG+V+YRVRVRRGGRKRPV KG
Sbjct: 19  MRFLLRVRTWEYRQLPVIHRVSRPTRPDKARRLGYKAKQGFVIYRVRVRRGGRKRPVRKG 78

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
           IVYGKP  QGV +LK  R+ R+VAEER G++ G L+VLNSYW+ +DSTYK++EVILVD  
Sbjct: 79  IVYGKPKTQGVNKLKSTRNLRAVAEERVGKRCGNLRVLNSYWVGQDSTYKFYEVILVDPF 138

Query: 121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTL 180
           HNAIRNDPRINWIC PVHKHRELRGLTSAG+K RGLR KGH   K RPSRRA WKR   +
Sbjct: 139 HNAIRNDPRINWICNPVHKHRELRGLTSAGRKSRGLRVKGHRASKLRPSRRANWKRRNRI 198

Query: 181 SLRRYR 186
            LRRYR
Sbjct: 199 VLRRYR 204

Length = 204

>gnl|CDD|224547 COG1632, RPL15A, Ribosomal protein L15E [Translation, ribosomal structure and biogenesis]

 Score =  197 bits (502), Expect = 8e-65
 Identities = 111/186 (59%), Positives = 131/186 (70%), Gaps = 11/186 (5%)

Query: 1   MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           +R L R R  E+R+ PSIVR+ RPTR D+AR LGYKAKQGYVV RVRVRRGGR R  PK 
Sbjct: 20  VRELLRQRLIEWRKEPSIVRIERPTRLDRARALGYKAKQGYVVVRVRVRRGGRNRKRPKK 79

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
               +PT  GV ++K ++S + +AEERAGRK   L+VLNSYW+ ED  YKYFEVILVD  
Sbjct: 80  --GRRPTRMGVNKIKRKKSLQFIAEERAGRKYPNLEVLNSYWVGEDGYYKYFEVILVDPR 137

Query: 121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTL 180
           H AI+NDP +NWIC+PVHK R  RGLTSAGKK RGLR  G         + A  KR  T 
Sbjct: 138 HPAIKNDPNLNWICRPVHKGRVFRGLTSAGKKSRGLRKGG---------KGAEKKRPSTR 188

Query: 181 SLRRYR 186
           +L+RYR
Sbjct: 189 ALQRYR 194

Length = 195

>gnl|CDD|235263 PRK04243, PRK04243, 50S ribosomal protein L15e; Validated

 Score =  192 bits (489), Expect = 1e-62
 Identities = 98/173 (56%), Positives = 120/173 (69%), Gaps = 2/173 (1%)

Query: 4   LQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVY 63
           L   R  E+R+ P++VR+ RPTR D+AR LGYKAKQG VV RVRVRRGG ++P PKG   
Sbjct: 24  LMWQRLQEWRREPAVVRIERPTRLDRARALGYKAKQGIVVVRVRVRRGGLRKPRPKG--G 81

Query: 64  GKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNA 123
            +P   GV ++   +S + +AEERA RK   L+VLNSYW+ ED  YK++EVILVD  H A
Sbjct: 82  RRPKRMGVNKITPAKSIQRIAEERAARKYPNLEVLNSYWVGEDGKYKWYEVILVDPHHPA 141

Query: 124 IRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR 176
           I+NDP +NWIC   H+ R  RGLTSAGKK RGLR KG    K RPS RA  +R
Sbjct: 142 IKNDPDLNWICDKSHRGRVFRGLTSAGKKGRGLRKKGKGTEKVRPSIRANERR 194

Length = 196

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	186
PTZ00026	204	60S ribosomal protein L15; Provisional	100.0
KOG1678	204	consensus 60s ribosomal protein L15 [Translation,	100.0
PF00827	192	Ribosomal_L15e: Ribosomal L15; InterPro: IPR000439	100.0
PRK04243	196	50S ribosomal protein L15e; Validated	100.0
COG1632	195	RPL15A Ribosomal protein L15E [Translation, riboso	100.0

>PTZ00026 60S ribosomal protein L15; Provisional

Probab=100.00  E-value=7.3e-111  Score=706.76  Aligned_cols=186  Identities=76%  Similarity=1.271  Sum_probs=185.1

Q ss_pred             ChhhHHHHHHHHhcCCceeEeCCCCchhHHhhcCCccccceEEEEEEeeecCCCCCccCCcccCCcccccceecccccch
Q 029857            1 MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSK   80 (186)
Q Consensus         1 mrfl~r~R~we~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~vi~RvrVrrGgrkrp~pkg~~~~kPk~~Gvn~lk~~~sl   80 (186)
                      |+||+|+|||||||+|+|+|+++||||||||+||||||||||||||||++||+++|+|+|+|||||++||||+||+++||
T Consensus        19 ~r~l~r~R~we~Rq~~~i~R~~rPTR~DkAR~LGYKAKQG~vv~RvrVRrGgrkr~~~kg~~~gkpk~~Gv~~lk~~ksl   98 (204)
T PTZ00026         19 MRFLLRVRTWEYRQLPVIHRVSRPTRPDKARRLGYKAKQGFVIYRVRVRRGGRKRPVRKGIVYGKPKTQGVNKLKSTRNL   98 (204)
T ss_pred             HHHHHHHHHHHHhcCCceEEcCCCCChhHHHHcCCcccceEEEEEEEEeeCCCCCCccCCCCCCCccccCccccCcchhH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhhccCCceeeeeeecccCCCceEEEEEEeeccccccccCCCCceeccCCcccccccCCccccccccCCCCCC
Q 029857           81 RSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKG  160 (186)
Q Consensus        81 q~iAEeR~grk~~nLrVLNSYwV~eD~~yK~fEVIlvDp~h~aIr~Dp~~~WI~~~~hkhRe~RGLTSAgkk~RGL~~kG  160 (186)
                      |+|||||||++||||||||||||+|||+|||||||||||+||+|++||+|||||+|+|||||||||||||+|+|||++||
T Consensus        99 q~iAEeRv~rk~~nLrVLNSYWV~qDg~yK~yEVILvDp~H~aIr~Dp~~nWI~~~~hk~Re~RGLTsAGkK~RGL~~kG  178 (204)
T PTZ00026         99 RAVAEERVGKRCGNLRVLNSYWVGQDSTYKFYEVILVDPFHNAIRNDPRINWICNPVHKHRELRGLTSAGRKSRGLRVKG  178 (204)
T ss_pred             HHHHHHHhhccCCCcEEecceeEcCCCCcccEEEEEecCCCccceeCcccceecccccchhhhccccccccccCCcCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCCchhhhcccceeEEeecC
Q 029857          161 HLHHKARPSRRATWKRNQTLSLRRYR  186 (186)
Q Consensus       161 ~~~~k~~~S~ra~w~r~ntl~l~r~r  186 (186)
                      |+++|++||++|+|+++|||+|+|||
T Consensus       179 ~~~~k~r~s~ra~~~r~n~~~l~r~r  204 (204)
T PTZ00026        179 HRASKLRPSRRANWKRRNRIVLRRYR  204 (204)
T ss_pred             CCcccCCcchhhhhhhccceeeEecC
Confidence            99999999999999999999999997

>KOG1678 consensus 60s ribosomal protein L15 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.7e-109  Score=689.85  Aligned_cols=185  Identities=81%  Similarity=1.327  Sum_probs=184.0

Q ss_pred             ChhhHHHHHHHHhcCCceeEeCCCCchhHHhhcCCccccceEEEEEEeeecCCCCCccCCcccCCcccccceecccccch
Q 029857            1 MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSK   80 (186)
Q Consensus         1 mrfl~r~R~we~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~vi~RvrVrrGgrkrp~pkg~~~~kPk~~Gvn~lk~~~sl   80 (186)
                      |+||+|+|||||||+++|||+++||||||||+||||||||||||||||++||+|+|+|||+|||||+|+|||||||++|+
T Consensus        19 mrfLlRvr~weYrQ~~~~hr~~rPtrpdkARrLGYkAKQG~viYrirVrrG~rKrpvpkG~tyGKp~~~GvnqlK~~rs~   98 (204)
T KOG1678|consen   19 MRFLLRVRCWEYRQLSAIHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVNQGVNQLKFQRSL   98 (204)
T ss_pred             HHHHHHHHHHHHhhhhhhhcCCCCCCchHHHhccccccceeEEEEEEEecCCccCCCCCCCccCCccccchhhhhhhHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhhccCCceeeeeeecccCCCceEEEEEEeeccccccccCCCCceeccCCcccccccCCccccccccCCCCCC
Q 029857           81 RSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKG  160 (186)
Q Consensus        81 q~iAEeR~grk~~nLrVLNSYwV~eD~~yK~fEVIlvDp~h~aIr~Dp~~~WI~~~~hkhRe~RGLTSAgkk~RGL~~kG  160 (186)
                      |++||||||++|+||+|||||||+||+||||||||||||+|+||++||+|||||+|||||||+|||||||+||||| |||
T Consensus        99 qs~AEer~Gr~~g~LrVlNSYWv~qDstYk~fEVIlvDp~h~aIRrdp~~nwI~kpvhKhRE~rGLTsagkksrGl-gKg  177 (204)
T KOG1678|consen   99 QSVAEERAGRRCGNLRVLNSYWVNQDSTYKYFEVILVDPFHKAIRRDPRINWICKPVHKHRELRGLTSAGKKSRGL-GKG  177 (204)
T ss_pred             HHHHHHHhhccccceeeeehhhccCccceeeEEEEEECcHHHHHhcCCCcccccchhhhhHHhcccccccccccCc-ccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             CcccccC-CCchhhhcccceeEEeecC
Q 029857          161 HLHHKAR-PSRRATWKRNQTLSLRRYR  186 (186)
Q Consensus       161 ~~~~k~~-~S~ra~w~r~ntl~l~r~r  186 (186)
                      |+|++|+ +|++|+|+++|||+|+|||
T Consensus       178 ~kf~~t~~gs~ra~Wkr~ntl~l~ryr  204 (204)
T KOG1678|consen  178 HKFNKTIGGSRRATWKRRNTLSLHRYR  204 (204)
T ss_pred             cccccCCCchhHHHHhhcccceeeecC
Confidence            9999999 8999999999999999997

>PF00827 Ribosomal_L15e: Ribosomal L15; InterPro: IPR000439 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=1.3e-106  Score=676.33  Aligned_cols=175  Identities=76%  Similarity=1.257  Sum_probs=163.1

Q ss_pred             ChhhHHHHHHHHhcCCceeEeCCCCchhHHhhcCCccccceEEEEEEeeecCCCCCccCCcccCCcccccceecccccch
Q 029857            1 MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSK   80 (186)
Q Consensus         1 mrfl~r~R~we~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~vi~RvrVrrGgrkrp~pkg~~~~kPk~~Gvn~lk~~~sl   80 (186)
                      |+||+|+|||||||+|+|+|+++||||||||+||||||||||||||||++||+++|+|+|++||||++||||+|||++||
T Consensus        18 ~~~l~r~R~~e~R~~~av~Ri~rPtR~dkAR~LGYKAKQG~vv~RvrVrrGgrkr~~~kg~~~gKPk~~Gv~~~k~~ksl   97 (192)
T PF00827_consen   18 MRFLLRIRLWEWRQLPAVHRIERPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPRPKGGRYGKPKHQGVNQLKPAKSL   97 (192)
T ss_dssp             HHHHHHHHHHHHHHS-SEEEESS-SSHHHHHHTT-SSSTTEEEEEEEEESSS---SSSSSSSTSSCGGSSSTSS--SS-H
T ss_pred             HHHHHHHHHHHHhcCCceEECCCCCCccHHHHcCCccCCeEEEEEEEEecCCCCCcccCCccccccccceeeccCccccH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhhccCCceeeeeeecccCCCceEEEEEEeeccccccccCCCCceeccCCcccccccCCccccccccCCCCCC
Q 029857           81 RSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKG  160 (186)
Q Consensus        81 q~iAEeR~grk~~nLrVLNSYwV~eD~~yK~fEVIlvDp~h~aIr~Dp~~~WI~~~~hkhRe~RGLTSAgkk~RGL~~kG  160 (186)
                      |+|||||||++||||||||||||+|||+|||||||||||+||+|++||+|||||+|+|||||||||||||+|+|||++||
T Consensus        98 q~iAEeRagrk~~nLrVLnSYwV~eDg~yK~fEVIlVDp~h~~Ir~D~~~nWI~~~~hk~R~~RGLTsAgkk~RGL~~kG  177 (192)
T PF00827_consen   98 QSIAEERAGRKYPNLRVLNSYWVGEDGTYKWFEVILVDPNHPAIRNDPDINWICNPVHKHREFRGLTSAGKKSRGLRGKG  177 (192)
T ss_dssp             HHHHHHHHHHHSTTSEEEEEEEEEEESSEEEEEEEEE-TTSHHHHTTTTTGGGGSGGGTTTTTTTTSHHHHHHTTTT-SS
T ss_pred             HHHhhhhhccccCCceEEeeEEeCCCCcceeEEEEEecCCcHHHhcCCccceecccccCccccccccchhhhhcccccCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCCchhhhc
Q 029857          161 HLHHKARPSRRATWK  175 (186)
Q Consensus       161 ~~~~k~~~S~ra~w~  175 (186)
                      |+++||+||++|||+
T Consensus       178 ~~~~k~rpS~ra~wk  192 (192)
T PF00827_consen  178 HGAEKTRPSRRANWK  192 (192)
T ss_dssp             TTCGGTSSTTTTTCC
T ss_pred             cccccCCcccccccC
Confidence            999999999999996

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities []. One of these families consists of: Mammalian L15. Insect L15. Plant L15. Yeast YL10 (L13) (Rp15r). Archaebacterial L15e. These proteins have about 200 amino acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_P 4A1E_L 4A17_L 4A1A_L 4A1C_L 2ZKR_m 3IZS_P 1S1I_L 3O58_O 3O5H_O ....

>PRK04243 50S ribosomal protein L15e; Validated

Probab=100.00  E-value=3.9e-103  Score=656.77  Aligned_cols=174  Identities=56%  Similarity=0.907  Sum_probs=171.8

Q ss_pred             ChhhHHHHHHHHhcCCceeEeCCCCchhHHhhcCCccccceEEEEEEeeecCCCCCccCCcccCCcccccceecccccch
Q 029857            1 MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSK   80 (186)
Q Consensus         1 mrfl~r~R~we~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~vi~RvrVrrGgrkrp~pkg~~~~kPk~~Gvn~lk~~~sl   80 (186)
                      |+||+|+|||||||+|+||||++||||||||+||||||||||||||||++||+++|+|+|+  |||++||||+|||++||
T Consensus        21 ~~~L~r~R~~e~R~~~~i~Rv~rPTR~DrAR~LGYKAKQG~vv~RvrVRrGgrkr~~~kg~--~kPk~~Gv~~lk~~ksl   98 (196)
T PRK04243         21 VGELMWQRLQEWRREPAVVRIERPTRLDRARALGYKAKQGIVVVRVRVRRGGLRKPRPKGG--RRPKRMGVNKITPAKSI   98 (196)
T ss_pred             HHHHHHHHHHHHhccCceEEcCCCCChhHHHHcCccccceEEEEEEEeccCCCCCCCcCCC--CCccccCccccchhhhH
Confidence            6899999999999999999999999999999999999999999999999999999999999  99999999999999999


Q ss_pred             hHHHHHHhhhccCCceeeeeeecccCCCceEEEEEEeeccccccccCCCCceeccCCcccccccCCccccccccCCCCCC
Q 029857           81 RSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKG  160 (186)
Q Consensus        81 q~iAEeR~grk~~nLrVLNSYwV~eD~~yK~fEVIlvDp~h~aIr~Dp~~~WI~~~~hkhRe~RGLTSAgkk~RGL~~kG  160 (186)
                      |+|||||||++||||||||||||+|||+|||||||||||+||+|++||+|||||+|+|||||||||||||+|+|||++||
T Consensus        99 q~iAEERa~rk~~nlrVLNSYwV~qDg~yK~fEVIlVDp~H~aIr~Dp~~nWI~~~~~k~R~~RGLTSAGkK~RGl~~kg  178 (196)
T PRK04243         99 QRIAEERAARKYPNLEVLNSYWVGEDGKYKWYEVILVDPHHPAIKNDPDLNWICDKSHRGRVFRGLTSAGKKGRGLRKKG  178 (196)
T ss_pred             HHHHHHHhhccCCCcEeeeeeEeccCCCcccEEEEEecCCCcchhcCcccceecccccchhhhhcccccccccccccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCCchhhhcc
Q 029857          161 HLHHKARPSRRATWKR  176 (186)
Q Consensus       161 ~~~~k~~~S~ra~w~r  176 (186)
                      |+++|++||++|+-++
T Consensus       179 ~~~~k~rps~ra~~~~  194 (196)
T PRK04243        179 KGTEKVRPSIRANERR  194 (196)
T ss_pred             CCceecCccccccccc
Confidence            9999999999998654

>COG1632 RPL15A Ribosomal protein L15E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=5.9e-84  Score=539.97  Aligned_cols=175  Identities=62%  Similarity=0.973  Sum_probs=170.2

Q ss_pred             ChhhHHHHHHHHhcCCceeEeCCCCchhHHhhcCCccccceEEEEEEeeecCCCCCccCCcccCCcccccceecccccch
Q 029857            1 MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSK   80 (186)
Q Consensus         1 mrfl~r~R~we~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~vi~RvrVrrGgrkrp~pkg~~~~kPk~~Gvn~lk~~~sl   80 (186)
                      +.+|+++|+|+||++|+|+||++|||+|+||.||||||||||||||+|++||..+++|+++  .+|++||||++++++|+
T Consensus        20 ~~~l~~~r~~~wR~~~~i~R~erPTrldrAR~LGykaKqG~vvvrvrVrrG~~~~~r~~~g--rrp~~mgvnki~~~ks~   97 (195)
T COG1632          20 VRELLRQRLIEWRKEPSIVRIERPTRLDRARALGYKAKQGYVVVRVRVRRGGRNRKRPKKG--RRPTRMGVNKIKRKKSL   97 (195)
T ss_pred             HhHHHhHHHHhhccCCceEEecCCCHHHHHHhcCCcccCceEEEEEeeecccccCcCccCC--CCcCcccccccChhhhH
Confidence            4689999999999999999999999999999999999999999999999999999999999  89999999999999999


Q ss_pred             hHHHHHHhhhccCCceeeeeeecccCCCceEEEEEEeeccccccccCCCCceeccCCcccccccCCccccccccCCCCCC
Q 029857           81 RSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKG  160 (186)
Q Consensus        81 q~iAEeR~grk~~nLrVLNSYwV~eD~~yK~fEVIlvDp~h~aIr~Dp~~~WI~~~~hkhRe~RGLTSAgkk~RGL~~kG  160 (186)
                      |.|||||||++||||+|||||||+|||.|||||||||||+||||++||+|||||+++|+||++|||||||+|+|||+.+|
T Consensus        98 ~~iAEerA~RK~pNL~vLnSYwVgeDg~yK~fEvIlvDp~H~aIk~Dp~l~wI~~~~~kgR~~RgltsagkK~rgl~k~~  177 (195)
T COG1632          98 QFIAEERAGRKYPNLEVLNSYWVGEDGYYKYFEVILVDPRHPAIKNDPNLNWICRPVHKGRVFRGLTSAGKKSRGLRKGG  177 (195)
T ss_pred             HHHHHHHhhccCCCcEeeeeEEeccccceeeEEEEEecCCChhhcCCCceeeecccccCCceeccccccchhhhhhhccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             CcccccCCCchhhhccc
Q 029857          161 HLHHKARPSRRATWKRN  177 (186)
Q Consensus       161 ~~~~k~~~S~ra~w~r~  177 (186)
                      .++++.+||.+|+++.+
T Consensus       178 k~~~~~R~~~~~~~~~~  194 (195)
T COG1632         178 KGAEKKRPSTRALQRYR  194 (195)
T ss_pred             CcccccCcchhhhhhhc
Confidence            89999999999888654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	186
3izr_P	204	Localization Of The Large Subunit Ribosomal Protein		1e-84
3izs_P	204	Localization Of The Large Subunit Ribosomal Protein		4e-59
1s1i_L	203	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		5e-59
2zkr_m	204	Structure Of A Mammalian Ribosomal 60s Subunit With		1e-57
3jyw_L	192	Structure Of The 60s Proteins For Eukaryotic Riboso		9e-56
4a17_L	204	T.Thermophila 60s Ribosomal Subunit In Complex With		5e-55
3zf7_Q	221	High-resolution Cryo-electron Microscopy Structure		1e-47
3j21_M	194	Promiscuous Behavior Of Proteins In Archaeal Riboso		6e-32
1jj2_L	194	Fully Refined Crystal Structure Of The Haloarcula M		5e-28
1ffk_I	194	Crystal Structure Of The Large Ribosomal Subunit Fr		5e-28
1vq9_M	195	The Structure Of Cca-Phe-Cap-Bio And The Antibiotic		9e-27
3cc2_M	196	The Refined Crystal Structure Of The Haloarcula Mar		9e-27
2qa4_M	196	A More Complete Structure Of The The L7L12 STALK OF		9e-27
1yi2_M	195	Crystal Structure Of Erythromycin Bound To The G209		9e-27
1s72_M	194	Refined Crystal Structure Of The Haloarcula Marismo		1e-26
3g4s_M	194	Co-Crystal Structure Of Tiamulin Bound To The Large		1e-26
1yhq_M	194	Crystal Structure Of Azithromycin Bound To The G209		1e-26

>pdb|3IZR|P Chain P, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 204

Iteration: 1
 Score =  308 bits (788), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 149/186 (80%), Positives = 161/186 (86%)
Query: 1   MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXX 60
           MRF+QRVRCWEYRQ P+IVR+TRPTRPDKARRLGYKAKQ                     
Sbjct: 19  MRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 78
Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
           IVYGKP +QG+TQLKFQR+KRSVAEERAGRKLGGL+VLNSYW+NEDSTYKYFE+ILVD A
Sbjct: 79  IVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIILVDVA 138
Query: 121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTL 180
           H+AIRNDPRINW+CKPVHKHRELRGLTSAGKKYRGLRGKGH HHKARPSRRATWKRNQT+
Sbjct: 139 HSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKGHTHHKARPSRRATWKRNQTV 198
Query: 181 SLRRYR 186
           SLRRYR
Sbjct: 199 SLRRYR 204

>pdb|3IZS|P Chain P, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 204

Iteration: 1
 Score =  223 bits (568), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 115/186 (61%), Positives = 127/186 (68%), Gaps = 1/186 (0%)
Query: 1   MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXX 60
           +RFLQRVR WEYRQ   I R  RPTRPDKARRLGYKAKQ                     
Sbjct: 19  LRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFVIYRVRVRRGNRKRPVPKG 78
Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
             YGKPTNQGV +LK+QRS R+ AEER GR+   L+VLNSYW+N+DSTYKYFEVILVD  
Sbjct: 79  ATYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYWVNQDSTYKYFEVILVDPQ 138
Query: 121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTL 180
           H AIR D R NWIC PVHKHRE RGLT+ GKK RG+  KGH  +  +  RR TWKR  TL
Sbjct: 139 HKAIRRDARYNWICDPVHKHREARGLTATGKKSRGI-NKGHKFNNTKAGRRKTWKRQNTL 197
Query: 181 SLRRYR 186
           SL RYR
Sbjct: 198 SLWRYR 203

>pdb|1S1I|L Chain L, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 203

Iteration: 1
 Score =  223 bits (568), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 115/186 (61%), Positives = 127/186 (68%), Gaps = 1/186 (0%)
Query: 1   MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXX 60
           +RFLQRVR WEYRQ   I R  RPTRPDKARRLGYKAKQ                     
Sbjct: 18  LRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFVIYRVRVRRGNRKRPVPKG 77
Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
             YGKPTNQGV +LK+QRS R+ AEER GR+   L+VLNSYW+N+DSTYKYFEVILVD  
Sbjct: 78  ATYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYWVNQDSTYKYFEVILVDPQ 137
Query: 121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTL 180
           H AIR D R NWIC PVHKHRE RGLT+ GKK RG+  KGH  +  +  RR TWKR  TL
Sbjct: 138 HKAIRRDARYNWICDPVHKHREARGLTATGKKSRGI-NKGHKFNNTKAGRRKTWKRQNTL 196
Query: 181 SLRRYR 186
           SL RYR
Sbjct: 197 SLWRYR 202

>pdb|2ZKR|MM Chain m, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 204

Iteration: 1
 Score =  219 bits (557), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 115/187 (61%), Positives = 128/187 (68%), Gaps = 2/187 (1%)
Query: 1   MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXX 60
           MRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                     
Sbjct: 19  MRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKG 78
Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
             YGKP + GV QLKF RS +SVAEERAGR  G L+VLNSYW+ EDSTYK+FEVIL+D  
Sbjct: 79  ATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPF 138
Query: 121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNQT 179
           H AIR +P   WI KPVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W+R  T
Sbjct: 139 HKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWRRRNT 197
Query: 180 LSLRRYR 186
           L L RYR
Sbjct: 198 LQLHRYR 204

>pdb|3JYW|L Chain L, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 192

Iteration: 1
 Score =  212 bits (540), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 108/176 (61%), Positives = 120/176 (68%), Gaps = 1/176 (0%)
Query: 1   MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXX 60
           +RFLQRVR WEYRQ   I R  RPTRPDKARRLGYKAKQ                     
Sbjct: 18  LRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFVIYRVRVRRGNRKRPVPKG 77
Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
             YGKPTNQGV +LK+QRS R+ AEER GR+   L+VLNSYW+N+DSTYKYFEVILVD  
Sbjct: 78  ATYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYWVNQDSTYKYFEVILVDPQ 137
Query: 121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR 176
           H AIR D R NWIC PVHKHRE RGLT+ GKK RG+  KGH  +  +  RR TWKR
Sbjct: 138 HKAIRRDARYNWICDPVHKHREARGLTATGKKSRGI-NKGHKFNNTKAGRRKTWKR 192

>pdb|4A17|L Chain L, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 204

Iteration: 1
 Score =  210 bits (534), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 104/186 (55%), Positives = 127/186 (68%)
Query: 1   MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXX 60
           M F+ R+R WEYRQ P I + +R +RPDKAR+LGYK K                      
Sbjct: 19  MSFILRLRTWEYRQLPVIHKASRSSRPDKARKLGYKNKDGYAIWRVRVRRGGRKRPVSKG 78
Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
           IVYGKP++ G+ QLKF R+ RS AEER G+++  L+VLNSYW+ +D TYK++EVIL D +
Sbjct: 79  IVYGKPSSVGINQLKFARNLRSCAEERVGKRVPELRVLNSYWVGQDGTYKFYEVILADPS 138
Query: 121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTL 180
           HNAIRNDPRINWIC+  HKHRELRGLTSAG+K RGLR KGH     R SR+  W+  Q L
Sbjct: 139 HNAIRNDPRINWICESAHKHRELRGLTSAGRKGRGLRVKGHRAKSLRTSRKGNWRARQML 198
Query: 181 SLRRYR 186
            LRRYR
Sbjct: 199 KLRRYR 204

>pdb|3ZF7|Q Chain Q, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 221

Iteration: 1
 Score =  185 bits (470), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 93/169 (55%), Positives = 111/169 (65%)
Query: 1   MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXX 60
           MRF+QRVR WE+R   +IVR+ RPTRP+KAR +GYK KQ                     
Sbjct: 36  MRFIQRVRAWEFRHQHTIVRLRRPTRPEKARMVGYKTKQGYVVFRVRVRRGGRKRPVHKG 95
Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
           I YGKP   GV   K  ++ R VAE+R G+K G L+VLNSYW+N DST+ ++EV+ VD  
Sbjct: 96  ITYGKPNTAGVLGRKLNKNNRVVAEQRLGKKYGNLRVLNSYWVNADSTFLWYEVVAVDPM 155
Query: 121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPS 169
           H AIR DPRINWI   VHKHRE RGLTSAG+K+RGLR KGH   K RPS
Sbjct: 156 HRAIRRDPRINWIVNAVHKHREQRGLTSAGRKHRGLRQKGHKASKLRPS 204

>pdb|3J21|M Chain M, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 194

Iteration: 1
 Score =  133 bits (335), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 77/170 (45%), Positives = 99/170 (58%), Gaps = 2/170 (1%)
Query: 4   LQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVY 63
           L + R  ++R+ P +VR+ RPTR D+AR LGY+AKQ                        
Sbjct: 22  LLKQRMIKWRREPVVVRIERPTRLDRARALGYQAKQGYVIVRVRVRKGGRKRPRWKG--G 79
Query: 64  GKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNA 123
            KP+  G  +   ++S + +AEE+A RK   L+VLNSYW+ ED  YK+FEVI+VD  H  
Sbjct: 80  RKPSKMGQVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPV 139
Query: 124 IRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRAT 173
           I++DP+I WI    HK R  RGLTSAGKK RGLR KG    K RPS RA 
Sbjct: 140 IKSDPKIAWIALKHHKGRVFRGLTSAGKKGRGLRNKGKGAEKVRPSIRAN 189

>pdb|1JJ2|L Chain L, Fully Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 194

Iteration: 1
 Score =  120 bits (301), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 96/166 (57%), Gaps = 2/166 (1%)
Query: 8   RCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPT 67
           R  E+R  P++VR+ RPTR D+AR LGYKAKQ                         K  
Sbjct: 27  RMQEWRNEPAVVRIERPTRLDRARSLGYKAKQGIIVVRVAIRKGSSRRTRFNKGRRSK-- 84
Query: 68  NQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRND 127
              V ++  +++ + +AEERA RK   L+VLNSY + ED  +K+ EVIL+D  H AI++D
Sbjct: 85  RMMVNRITRKKNIQRIAEERANRKFPNLRVLNSYSVGEDGRHKWHEVILIDPDHPAIKSD 144
Query: 128 PRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRAT 173
            +++WI +  H+ R  RGLTSAG++ RGLRG+G    K RPS R  
Sbjct: 145 DQLSWISRTRHRLRTFRGLTSAGRRCRGLRGQGKGSEKVRPSLRVN 190

>pdb|1FFK|I Chain I, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 194

Iteration: 1
 Score =  120 bits (300), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 73/176 (41%), Positives = 101/176 (57%), Gaps = 18/176 (10%)
Query: 8   RCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPT 67
           R  ++R+ P++VR+ RPTR D+AR LGYKAK+                            
Sbjct: 27  RLQKWRREPAVVRIPRPTRLDRARALGYKAKKGIIVVRVRIRRGGRRATR---------P 77
Query: 68  NQGVTQLKFQRSKRS-------VAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
           N+G    K   ++R        +AEERA RK   ++VLNSYW+ ED  YK+FEVILVD  
Sbjct: 78  NKGRKSKKMMVNRRPRKKNLQWIAEERANRKYPNMEVLNSYWVGEDGRYKWFEVILVDRD 137
Query: 121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR 176
           H AI++DP+++W+ +   + R  RGLTSAG+K RGLR KG    K RPS RA +++
Sbjct: 138 HPAIKSDPQLSWVSR--TRGRVYRGLTSAGRKARGLRRKGRGAEKVRPSLRANFRK 191

>pdb|1VQ9|M Chain M, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic Sparsomycin Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui Length = 195

Iteration: 1
 Score =  116 bits (290), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 71/170 (41%), Positives = 91/170 (53%), Gaps = 2/170 (1%)
Query: 4   LQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVY 63
           LQ  R  E+R   ++ R+ RPTR DKAR  GYKAKQ                        
Sbjct: 24  LQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVARVSVRKGSARKRRHKAGRR 83
Query: 64  GKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNA 123
            K   QGVT++  ++  + VAEERA R    L+VLNSY + +D   K+ EVIL+D  H A
Sbjct: 84  SK--RQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVGQDGRQKWHEVILIDPNHPA 141
Query: 124 IRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRAT 173
           I+ND  ++WIC      R  RGLT AG++ RGL GKG    K RPS R+ 
Sbjct: 142 IQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSEKTRPSLRSN 191

>pdb|3CC2|M Chain M, The Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution With Rrna Sequence For The 23s Rrna And Genome-Derived Sequences For R-Proteins Length = 196

Iteration: 1
 Score =  116 bits (290), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 71/170 (41%), Positives = 91/170 (53%), Gaps = 2/170 (1%)
Query: 4   LQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVY 63
           LQ  R  E+R   ++ R+ RPTR DKAR  GYKAKQ                        
Sbjct: 24  LQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVARVSVRKGSARKRRHKAGRR 83
Query: 64  GKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNA 123
            K   QGVT++  ++  + VAEERA R    L+VLNSY + +D   K+ EVIL+D  H A
Sbjct: 84  SK--RQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVGQDGRQKWHEVILIDPNHPA 141
Query: 124 IRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRAT 173
           I+ND  ++WIC      R  RGLT AG++ RGL GKG    K RPS R+ 
Sbjct: 142 IQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSEKTRPSLRSN 191

>pdb|2QA4|M Chain M, A More Complete Structure Of The The L7L12 STALK OF THE Haloarcula Marismortui 50s Large Ribosomal Subunit Length = 196

Iteration: 1
 Score =  116 bits (290), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 71/170 (41%), Positives = 91/170 (53%), Gaps = 2/170 (1%)
Query: 4   LQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVY 63
           LQ  R  E+R   ++ R+ RPTR DKAR  GYKAKQ                        
Sbjct: 24  LQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVARVSVRKGSARKRRHKAGRR 83
Query: 64  GKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNA 123
            K   QGVT++  ++  + VAEERA R    L+VLNSY + +D   K+ EVIL+D  H A
Sbjct: 84  SK--RQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVGQDGRQKWHEVILIDPNHPA 141
Query: 124 IRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRAT 173
           I+ND  ++WIC      R  RGLT AG++ RGL GKG    K RPS R+ 
Sbjct: 142 IQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSEKTRPSLRSN 191

>pdb|1YI2|M Chain M, Crystal Structure Of Erythromycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui Length = 195

Iteration: 1
 Score =  116 bits (290), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 71/170 (41%), Positives = 91/170 (53%), Gaps = 2/170 (1%)
Query: 4   LQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVY 63
           LQ  R  E+R   ++ R+ RPTR DKAR  GYKAKQ                        
Sbjct: 24  LQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVARVSVRKGSARKRRHKAGRR 83
Query: 64  GKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNA 123
            K   QGVT++  ++  + VAEERA R    L+VLNSY + +D   K+ EVIL+D  H A
Sbjct: 84  SK--RQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVGQDGRQKWHEVILIDPNHPA 141
Query: 124 IRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRAT 173
           I+ND  ++WIC      R  RGLT AG++ RGL GKG    K RPS R+ 
Sbjct: 142 IQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSEKTRPSLRSN 191

>pdb|1S72|M Chain M, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 194

Iteration: 1
 Score =  115 bits (289), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/170 (41%), Positives = 91/170 (53%), Gaps = 2/170 (1%)
Query: 4   LQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVY 63
           LQ  R  E+R   ++ R+ RPTR DKAR  GYKAKQ                        
Sbjct: 23  LQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVARVSVRKGSARKRRHKAGRR 82
Query: 64  GKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNA 123
            K   QGVT++  ++  + VAEERA R    L+VLNSY + +D   K+ EVIL+D  H A
Sbjct: 83  SK--RQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVGQDGRQKWHEVILIDPNHPA 140
Query: 124 IRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRAT 173
           I+ND  ++WIC      R  RGLT AG++ RGL GKG    K RPS R+ 
Sbjct: 141 IQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSEKTRPSLRSN 190

>pdb|3G4S|M Chain M, Co-Crystal Structure Of Tiamulin Bound To The Large Ribosomal Subunit Length = 194

Iteration: 1
 Score =  115 bits (289), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/170 (41%), Positives = 91/170 (53%), Gaps = 2/170 (1%)
Query: 4   LQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVY 63
           LQ  R  E+R   ++ R+ RPTR DKAR  GYKAKQ                        
Sbjct: 23  LQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVARVSVRKGSARKRRHKAGRR 82
Query: 64  GKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNA 123
            K   QGVT++  ++  + VAEERA R    L+VLNSY + +D   K+ EVIL+D  H A
Sbjct: 83  SK--RQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVGQDGRQKWHEVILIDPNHPA 140
Query: 124 IRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRAT 173
           I+ND  ++WIC      R  RGLT AG++ RGL GKG    K RPS R+ 
Sbjct: 141 IQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSEKTRPSLRSN 190

>pdb|1YHQ|M Chain M, Crystal Structure Of Azithromycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui Length = 194

Iteration: 1
 Score =  115 bits (289), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/170 (41%), Positives = 91/170 (53%), Gaps = 2/170 (1%)
Query: 4   LQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVY 63
           LQ  R  E+R   ++ R+ RPTR DKAR  GYKAKQ                        
Sbjct: 23  LQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVARVSVRKGSARKRRHKAGRR 82
Query: 64  GKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNA 123
            K   QGVT++  ++  + VAEERA R    L+VLNSY + +D   K+ EVIL+D  H A
Sbjct: 83  SK--RQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVGQDGRQKWHEVILIDPNHPA 140
Query: 124 IRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRAT 173
           I+ND  ++WIC      R  RGLT AG++ RGL GKG    K RPS R+ 
Sbjct: 141 IQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSEKTRPSLRSN 190

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	186
3iz5_P	204	60S ribosomal protein L15 (L15E); eukaryotic ribos	3e-83
4a17_L	204	RPL15, ribosomal protein L15; eukaryotic ribosome,	7e-83
3jyw_L	192	60S ribosomal protein L15(A); eukaryotic ribosome,	3e-78
1vq8_M	194	50S ribosomal protein L15E; ribosome 50S, protein-	2e-76
1ffk_I	194	Ribosomal protein L15E; ribosome assembly, RNA-RNA	4e-73

>4a17_L RPL15, ribosomal protein L15; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_L 4a1c_L 4a1e_L Length = 204

 Score =  242 bits (620), Expect = 7e-83
 Identities = 121/186 (65%), Positives = 146/186 (78%)

Query: 1   MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           M F+ R+R WEYRQ P I + +R +RPDKAR+LGYK K GY ++RVRVRRGGRKRPV KG
Sbjct: 19  MSFILRLRTWEYRQLPVIHKASRSSRPDKARKLGYKNKDGYAIWRVRVRRGGRKRPVSKG 78

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
           IVYGKP++ G+ QLKF R+ RS AEER G+++  L+VLNSYW+ +D TYK++EVIL D +
Sbjct: 79  IVYGKPSSVGINQLKFARNLRSCAEERVGKRVPELRVLNSYWVGQDGTYKFYEVILADPS 138

Query: 121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTL 180
           HNAIRNDPRINWIC+  HKHRELRGLTSAG+K RGLR KGH     R SR+  W+  Q L
Sbjct: 139 HNAIRNDPRINWICESAHKHRELRGLTSAGRKGRGLRVKGHRAKSLRTSRKGNWRARQML 198

Query: 181 SLRRYR 186
            LRRYR
Sbjct: 199 KLRRYR 204

>3jyw_L 60S ribosomal protein L15(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 3izc_P 3izs_P 3o58_O 3o5h_O 3u5e_N 3u5i_N 1s1i_L Length = 192

 Score =  230 bits (588), Expect = 3e-78
 Identities = 126/176 (71%), Positives = 140/176 (79%), Gaps = 1/176 (0%)

Query: 1   MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           +RFLQRVR WEYRQ   I R  RPTRPDKARRLGYKAKQG+V+YRVRVRRG RKRPVPKG
Sbjct: 18  LRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFVIYRVRVRRGNRKRPVPKG 77

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
             YGKPTNQGV +LK+QRS R+ AEER GR+   L+VLNSYW+N+DSTYKYFEVILVD  
Sbjct: 78  ATYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYWVNQDSTYKYFEVILVDPQ 137

Query: 121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR 176
           H AIR D R NWIC PVHKHRE RGLT+ GKK RG+  KGH  +  +  RR TWKR
Sbjct: 138 HKAIRRDARYNWICDPVHKHREARGLTATGKKSRGI-NKGHKFNNTKAGRRKTWKR 192

>1vq8_M 50S ribosomal protein L15E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.2 PDB: 1vq4_M* 1vq5_M* 1vq6_M* 1vq7_M* 1s72_M* 1vqn_M* 2otj_M* 2otl_M* 2qex_M* 2qa4_M* 1vqo_M* 1vq9_M* 1vql_M* 1vqm_M* 1vqk_M* 1vqp_M* 1yij_M* 1yi2_M* 1yit_M* 1yj9_M* ... Length = 194

 Score =  226 bits (577), Expect = 2e-76
 Identities = 78/176 (44%), Positives = 105/176 (59%), Gaps = 2/176 (1%)

Query: 1   MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           +  LQ  R  E+R   ++ R+ RPTR DKAR  GYKAKQG +V RV VR+G  ++   K 
Sbjct: 20  LAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVARVSVRKGSARKRRHKA 79

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
               +   QGVT++  ++  + VAEERA R    L+VLNSY + +D   K+ EVIL+D  
Sbjct: 80  --GRRSKRQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVGQDGRQKWHEVILIDPN 137

Query: 121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR 176
           H AI+ND  ++WIC      R  RGLT AG++ RGL GKG    K RPS R+   +
Sbjct: 138 HPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSEKTRPSLRSNGGK 193

>1ffk_I Ribosomal protein L15E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.12.1.2 Length = 194

 Score =  217 bits (555), Expect = 4e-73
 Identities = 83/178 (46%), Positives = 118/178 (66%), Gaps = 4/178 (2%)

Query: 1   MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           +  L   R  ++R+ P++VR+ RPTR D+AR LGYKAK+G +V RVR+RRGGR+   P  
Sbjct: 20  VGELMWHRLQKWRREPAVVRIPRPTRLDRARALGYKAKKGIIVVRVRIRRGGRRATRPNK 79

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
               K     V +   +++ + +AEERA RK   ++VLNSYW+ ED  YK+FEVILVD  
Sbjct: 80  --GRKSKKMMVNRRPRKKNLQWIAEERANRKYPNMEVLNSYWVGEDGRYKWFEVILVDRD 137

Query: 121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQ 178
           H AI++DP+++W+ +   + R  RGLTSAG+K RGLR KG    K RPS RA +++ +
Sbjct: 138 HPAIKSDPQLSWVSR--TRGRVYRGLTSAGRKARGLRRKGRGAEKVRPSLRANFRKKR 193

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	186
3iz5_P	204	60S ribosomal protein L15 (L15E); eukaryotic ribos	100.0
4a17_L	204	RPL15, ribosomal protein L15; eukaryotic ribosome,	100.0
3jyw_L	192	60S ribosomal protein L15(A); eukaryotic ribosome,	100.0
1vq8_M	194	50S ribosomal protein L15E; ribosome 50S, protein-	100.0
3j21_M	194	50S ribosomal protein L15E; archaea, archaeal, KIN	100.0
1ffk_I	194	Ribosomal protein L15E; ribosome assembly, RNA-RNA	100.0

>4a17_L RPL15, ribosomal protein L15; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_L 4a1c_L 4a1e_L

Probab=100.00  E-value=1.7e-114  Score=727.65  Aligned_cols=186  Identities=65%  Similarity=1.163  Sum_probs=185.1

Q ss_pred             ChhhHHHHHHHHhcCCceeEeCCCCchhHHhhcCCccccceEEEEEEeeecCCCCCccCCcccCCcccccceecccccch
Q 029857            1 MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSK   80 (186)
Q Consensus         1 mrfl~r~R~we~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~vi~RvrVrrGgrkrp~pkg~~~~kPk~~Gvn~lk~~~sl   80 (186)
                      |+||+|+|||||||||+||||++||||||||+||||||||||||||||++||+++|+|+|+|||||++||||+|||++||
T Consensus        19 ~~~l~r~R~~e~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~Vv~RvrVRrGgrkrp~pkg~~~~kPk~~Gvn~lk~~ksl   98 (204)
T 4a17_L           19 MSFILRLRTWEYRQLPVIHKASRSSRPDKARKLGYKNKDGYAIWRVRVRRGGRKRPVSKGIVYGKPSSVGINQLKFARNL   98 (204)
T ss_dssp             HHHHHHHHHHHHHHSCSEEEESSCSCHHHHHHTTCCSSTTEEEEEEEEECSCCCCCCGGGCCCSCTTTCCCTTCCCSSCH
T ss_pred             HHHHHHHHHHHHhcCCceEEcCCCCChHHHHhcCCccCCeeEEEEEEEeeCCCCCCccCCCcccCcccccccccCcchhH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhhccCCceeeeeeecccCCCceEEEEEEeeccccccccCCCCceeccCCcccccccCCccccccccCCCCCC
Q 029857           81 RSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKG  160 (186)
Q Consensus        81 q~iAEeR~grk~~nLrVLNSYwV~eD~~yK~fEVIlvDp~h~aIr~Dp~~~WI~~~~hkhRe~RGLTSAgkk~RGL~~kG  160 (186)
                      |+|||||||++||||||||||||+|||+|||||||||||+||||++||+|||||+|+|||||||||||||+|+|||+|||
T Consensus        99 q~iAEERagrk~~nLrVLNSYwV~eDg~yK~fEVILVDp~H~aIr~Dp~~nWI~~~~hk~Re~RGLTsAGkk~RGLr~kG  178 (204)
T 4a17_L           99 RSCAEERVGKRVPELRVLNSYWVGQDGTYKFYEVILADPSHNAIRNDPRINWICESAHKHRELRGLTSAGRKGRGLRVKG  178 (204)
T ss_dssp             HHHHHHHHHHHSCSSEEEEEEEEECCSSEEEEEEEEECTTSHHHHHCTTTGGGGSGGGTTTTTTTCSHHHHHHTTTTCCS
T ss_pred             HHHHHHHHhccCCCcEEeeeeeecCCCCcceEEEEEecCCchhhccCCccccccCchhccccccCcccccccccccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCCchhhhcccceeEEeecC
Q 029857          161 HLHHKARPSRRATWKRNQTLSLRRYR  186 (186)
Q Consensus       161 ~~~~k~~~S~ra~w~r~ntl~l~r~r  186 (186)
                      |+++|++||++|+|+++|||||+|||
T Consensus       179 ~~~~k~r~s~ra~w~r~ntl~l~r~r  204 (204)
T 4a17_L          179 HRAKSLRTSRKGNWRARQMLKLRRYR  204 (204)
T ss_dssp             TTTGGGTTTHHHHHHHHHCCCCCSCC
T ss_pred             CCcccCCcchhhhhhccceeeeEecC
Confidence            99999999999999999999999997

>3jyw_L 60S ribosomal protein L15(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 3izc_P 3izs_P 3o58_O 3o5h_O 3u5e_N 3u5i_N 4b6a_N 1s1i_L

Probab=100.00  E-value=3.7e-109  Score=690.18  Aligned_cols=175  Identities=72%  Similarity=1.238  Sum_probs=173.9

Q ss_pred             ChhhHHHHHHHHhcCCceeEeCCCCchhHHhhcCCccccceEEEEEEeeecCCCCCccCCcccCCcccccceecccccch
Q 029857            1 MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSK   80 (186)
Q Consensus         1 mrfl~r~R~we~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~vi~RvrVrrGgrkrp~pkg~~~~kPk~~Gvn~lk~~~sl   80 (186)
                      |+||+|+|||||||||+||||++||||||||+||||||||||||||||++||+++|+|+|+|||||++||||+|||++||
T Consensus        18 ~~~l~r~R~~e~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~Vv~RvrVRrGgrkrp~pkg~~~gkPk~~Gvn~lk~~ksl   97 (192)
T 3jyw_L           18 LRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFVIYRVRVRRGNRKRPVPKGATYGKPTNQGVNELKYQRSL   97 (192)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEESSCSSHHHHHHHHCCCSTTCEEEEEECCCSSSBCCCCCSCSCSSCSSCCSBCCCCSSCH
T ss_pred             HHHHHHHHHHHHhcCCceEEcCCCCChHHHHhcCCccCCeeEEEEEEEeECCCCCCccCCCcccCcccccccccCccccH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhhccCCceeeeeeecccCCCceEEEEEEeeccccccccCCCCceeccCCcccccccCCccccccccCCCCCC
Q 029857           81 RSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKG  160 (186)
Q Consensus        81 q~iAEeR~grk~~nLrVLNSYwV~eD~~yK~fEVIlvDp~h~aIr~Dp~~~WI~~~~hkhRe~RGLTSAgkk~RGL~~kG  160 (186)
                      |+|||||||++||||||||||||+|||+|||||||||||+||+|++||+|||||+|+|||||||||||||+|+||| |||
T Consensus        98 q~iAEERagrk~~nLrVLNSYwV~eDg~yK~fEVILVDp~H~aIr~Dp~~nWI~~~~hk~Re~RGLTsAGkk~RGL-~kG  176 (192)
T 3jyw_L           98 RATAEERVGRRAANLRVLNSYWVNQDSTYKYFEVILVDPQHKAIRRDARYNWICDPVHKHREARGLTATGKKSRGI-NKG  176 (192)
T ss_dssp             HHHHHHHHHTTSSSSEEEEEEEEEECSSCEEEEEEEECSSCSSTTTSSTTTGGGSGGGSSTTTTTCSTTGGGGTCC-CCS
T ss_pred             HHHHHHHHhccCCCcEEeeeeeecCCCCcceEEEEEecCCchhhccCCccccccCchhccccccCCcccccccccc-CCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             CcccccCCCchhhhcc
Q 029857          161 HLHHKARPSRRATWKR  176 (186)
Q Consensus       161 ~~~~k~~~S~ra~w~r  176 (186)
                      |+++||+||++|+|++
T Consensus       177 ~~~~k~~~s~ra~w~r  192 (192)
T 3jyw_L          177 HKFNNTKAGRRKTWKR  192 (192)
T ss_dssp             STTSSSSSCHHHHTCC
T ss_pred             cCcccCCCcccccccC
Confidence            9999999999999986

>1vq8_M 50S ribosomal protein L15E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.2 PDB: 1vq4_M* 1vq5_M* 1vq6_M* 1vq7_M* 1s72_M* 1vqn_M* 2otj_M* 2otl_M* 2qex_M* 2qa4_M* 1vqo_M* 1vq9_M* 1vql_M* 1vqm_M* 1vqk_M* 1vqp_M* 1yij_M* 1yi2_M* 1yit_M* 1yj9_M* ...

Probab=100.00  E-value=9.1e-107  Score=676.46  Aligned_cols=174  Identities=45%  Similarity=0.694  Sum_probs=172.8

Q ss_pred             ChhhHHHHHHHHhcCCceeEeCCCCchhHHhhcCCccccceEEEEEEeeecCCCCCccCCcccCCcccccceecccccch
Q 029857            1 MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSK   80 (186)
Q Consensus         1 mrfl~r~R~we~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~vi~RvrVrrGgrkrp~pkg~~~~kPk~~Gvn~lk~~~sl   80 (186)
                      |+||+|+|||||||+|+||||++||||||||+|||||||||||||||||+||+++|+|+|+  |||++||||+|||++||
T Consensus        20 ~r~llr~R~~e~Rq~~~i~R~~rPTR~DkAR~LGYKAKQG~vv~RvrVRrGgrkrp~pkg~--~kPk~~Gv~~lk~~rsl   97 (194)
T 1vq8_M           20 LAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVARVSVRKGSARKRRHKAG--RRSKRQGVTRITRRKDI   97 (194)
T ss_dssp             HHHHHHHHHHHHTTSCSEEEESSCSSHHHHHHHTCCSSTTEEEEEEEEECSSCCCCCCSSC--CCGGGTCCSSCCCSSCH
T ss_pred             HHHHHHHHHHHHhCCCceEEcCCCCChhHHHhcCCccCCeEEEEEEEeccCCCCCCCcCCC--CCccccCccccCccccH
Confidence            7899999999999999999999999999999999999999999999999999999999999  99999999999999999


Q ss_pred             hHHHHHHhhhccCCceeeeeeecccCCCceEEEEEEeeccccccccCCCCceeccCCcccccccCCccccccccCCCCCC
Q 029857           81 RSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKG  160 (186)
Q Consensus        81 q~iAEeR~grk~~nLrVLNSYwV~eD~~yK~fEVIlvDp~h~aIr~Dp~~~WI~~~~hkhRe~RGLTSAgkk~RGL~~kG  160 (186)
                      |+|||||||++||||||||||||+|||+|||||||||||+||+|++||+|||||+|+|||||||||||||+|+|||++||
T Consensus        98 q~iAEERagrk~~nLrVLNSYWV~eD~~yK~yEVILVDp~H~aIr~Dp~~nWI~~~~hk~Re~RGLTsaGkk~RGL~~kG  177 (194)
T 1vq8_M           98 QRVAEERASRTFPNLRVLNSYSVGQDGRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKG  177 (194)
T ss_dssp             HHHHHHHHHHHSTTCEEEEEEEEEEETTEEEEEEEEECTTCHHHHTCTTTGGGGSGGGTTGGGGTCSHHHHHHTTCSCSS
T ss_pred             HHHHHHHHhccCCCceeeeeEEeccCCceeEEEEEEEcCCcHhhhcCcccccccCcccccchhccccccccccCccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCCchhhhcc
Q 029857          161 HLHHKARPSRRATWKR  176 (186)
Q Consensus       161 ~~~~k~~~S~ra~w~r  176 (186)
                      |+++|++||++|+|++
T Consensus       178 ~~~~k~~~~~ra~w~~  193 (194)
T 1vq8_M          178 KGSEKTRPSLRSNGGK  193 (194)
T ss_dssp             TTCTTTSSCTTTTTSC
T ss_pred             CCcccCCcccchhhcc
Confidence            9999999999999986

>3j21_M 50S ribosomal protein L15E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=2.8e-106  Score=673.75  Aligned_cols=174  Identities=53%  Similarity=0.851  Sum_probs=172.7

Q ss_pred             ChhhHHHHHHHHhcCCceeEeCCCCchhHHhhcCCccccceEEEEEEeeecCCCCCccCCcccCCcccccceecccccch
Q 029857            1 MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSK   80 (186)
Q Consensus         1 mrfl~r~R~we~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~vi~RvrVrrGgrkrp~pkg~~~~kPk~~Gvn~lk~~~sl   80 (186)
                      |+||+|+|||||||+|+||||++||||||||+||||||||||||||||++||+++|+|+|+  |||++||||+|||++||
T Consensus        19 ~~~l~r~R~~e~Rq~~ai~R~~rPTR~dkAR~LGYKAKQG~Vv~RvrVrrGgrkr~~pkg~--~kPk~~Gv~~lk~~ksl   96 (194)
T 3j21_M           19 VGELLKQRMIKWRREPVVVRIERPTRLDRARALGYQAKQGYVIVRVRVRKGGRKRPRWKGG--RKPSKMGQVKYSPKKSL   96 (194)
T ss_dssp             HHHHHHHHHHHHHHSCSEEEESSCSSHHHHHHHHCCCSTTEEEEEEEEESSCCCCCCCSSC--CCTTTTCCSSCCCSSCH
T ss_pred             HHHHHHHHHHHHhccCceeecCCCCChhHHHhcCccccCceEEEEEEEeeCCCCCCCcCCC--CCcccccccccCccccH
Confidence            6899999999999999999999999999999999999999999999999999999999999  99999999999999999


Q ss_pred             hHHHHHHhhhccCCceeeeeeecccCCCceEEEEEEeeccccccccCCCCceeccCCcccccccCCccccccccCCCCCC
Q 029857           81 RSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKG  160 (186)
Q Consensus        81 q~iAEeR~grk~~nLrVLNSYwV~eD~~yK~fEVIlvDp~h~aIr~Dp~~~WI~~~~hkhRe~RGLTSAgkk~RGL~~kG  160 (186)
                      |+|||||||++||||||||||||+|||+|||||||||||+||||++||+|||||+|+|||||||||||||+|+|||++||
T Consensus        97 q~iAEERagrk~~nLrVLNSYwV~eDg~yK~fEVILVDp~H~aIr~Dp~~nWI~~~~hk~Re~RGLTsAGkk~RGL~~kG  176 (194)
T 3j21_M           97 QWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPKIAWIALKHHKGRVFRGLTSAGKKGRGLRNKG  176 (194)
T ss_dssp             HHHHHHHHHHHSTTSEEEEEEEEEECSSEEEEEEEEECSSCHHHHHSTTTGGGGSGGGTTHHHHCCSHHHHHHHTTTCSS
T ss_pred             HHHHHHHHhccCCCceeeeceeecCCCCceeEEEEEEcCCChhhccCCccccccccccccccccCccccccccccccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCCchhhhcc
Q 029857          161 HLHHKARPSRRATWKR  176 (186)
Q Consensus       161 ~~~~k~~~S~ra~w~r  176 (186)
                      |+++|++||++|+|++
T Consensus       177 ~~~~k~rps~ra~~~~  192 (194)
T 3j21_M          177 KGAEKVRPSIRANEGK  192 (194)
T ss_dssp             TTCSSSSSCSTTSSSC
T ss_pred             CcccccCccccccccc
Confidence            9999999999999986

>1ffk_I Ribosomal protein L15E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.12.1.2

Probab=100.00  E-value=7.3e-105  Score=664.99  Aligned_cols=173  Identities=48%  Similarity=0.805  Sum_probs=171.4

Q ss_pred             ChhhHHHHHHHHhcCCceeEeCCCCchhHHhhcCCccccceEEEEEEeeecCCCCCccCCcccCCcccccceecccccch
Q 029857            1 MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSK   80 (186)
Q Consensus         1 mrfl~r~R~we~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~vi~RvrVrrGgrkrp~pkg~~~~kPk~~Gvn~lk~~~sl   80 (186)
                      |+||+|+|||||||+|+||||++||||||||+||||||||||||||||++||+++|+|+|+  |||++||||+|||++||
T Consensus        20 ~r~llr~R~~e~Rq~~~i~R~~rPTR~DkAR~LGYKAKQG~vv~RvrVRrGgrkrp~pkg~--~kPk~~Gvn~lk~~rsl   97 (194)
T 1ffk_I           20 VGELMWHRLQKWRREPAVVRIPRPTRLDRARALGYKAKKGIIVVRVRIRRGGRRATRPNKG--RKSKKMMVNRRPRKKNL   97 (194)
T ss_pred             HHHHHHHHHHHHhCCCceEEcCCCCchhHHHhcCCccCCeEEEEEEEeccCCCCCCCcCCC--CCccccCccccCccccH
Confidence            7899999999999999999999999999999999999999999999999999999999999  99999999999999999


Q ss_pred             hHHHHHHhhhccCCceeeeeeecccCCCceEEEEEEeeccccccccCCCCceeccCCcccccccCCccccccccCCCCCC
Q 029857           81 RSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKG  160 (186)
Q Consensus        81 q~iAEeR~grk~~nLrVLNSYwV~eD~~yK~fEVIlvDp~h~aIr~Dp~~~WI~~~~hkhRe~RGLTSAgkk~RGL~~kG  160 (186)
                      |+|||||||++||||||||||||+|||+|||||||||||+||||++||+|||||+  |||||||||||||+|+|||++||
T Consensus        98 q~iAEERagrk~~nLrVLNSYWV~qD~~yK~yEVILVDp~H~aIr~Dp~~nWI~~--hk~Re~RGLTsaGkk~RGL~~kG  175 (194)
T 1ffk_I           98 QWIAEERANRKYPNMEVLNSYWVGEDGRYKWFEVILVDRDHPAIKSDPQLSWVSR--TRGRVYRGLTSAGRKARGLRRKG  175 (194)
T ss_pred             HHHHHHHHhccCCCceeeeeEEeccCCceeEEEEEEEcCCcHhhhcCcccccccc--cccchhccccccccccCccCCCC
Confidence            9999999999999999999999999999999999999999999999999999999  99999999999999999999999


Q ss_pred             CcccccCCCchhhhccc
Q 029857          161 HLHHKARPSRRATWKRN  177 (186)
Q Consensus       161 ~~~~k~~~S~ra~w~r~  177 (186)
                      |+++|++||++|+|++.
T Consensus       176 ~~~~k~~~~~ra~w~r~  192 (194)
T 1ffk_I          176 RGAEKVRPSLRANFRKK  192 (194)
T ss_pred             CCcccCCcchhhhhhhc
Confidence            99999999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	186
d1vqom1	194	d.12.1.2 (M:1-194) Ribosomal protein L15e {Archaeo	5e-85

>d1vqom1 d.12.1.2 (M:1-194) Ribosomal protein L15e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 194

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L15e
domain: Ribosomal protein L15e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  246 bits (631), Expect = 5e-85
 Identities = 78/176 (44%), Positives = 105/176 (59%), Gaps = 2/176 (1%)

Query: 1   MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           +  LQ  R  E+R   ++ R+ RPTR DKAR  GYKAKQG +V RV VR+G  ++   K 
Sbjct: 20  LAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVARVSVRKGSARKRRHKA 79

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAA 120
               +   QGVT++  ++  + VAEERA R    L+VLNSY + +D   K+ EVIL+D  
Sbjct: 80  --GRRSKRQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVGQDGRQKWHEVILIDPN 137

Query: 121 HNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR 176
           H AI+ND  ++WIC      R  RGLT AG++ RGL GKG    K RPS R+   +
Sbjct: 138 HPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSEKTRPSLRSNGGK 193

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	186
d1vqom1	194	Ribosomal protein L15e {Archaeon Haloarcula marism	100.0
d1ffki_	194	Ribosomal protein L15e {Archaeon Haloarcula marism	100.0

>d1vqom1 d.12.1.2 (M:1-194) Ribosomal protein L15e {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L15e
domain: Ribosomal protein L15e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=6.3e-104  Score=657.16  Aligned_cols=174  Identities=45%  Similarity=0.694  Sum_probs=172.5

Q ss_pred             ChhhHHHHHHHHhcCCceeEeCCCCchhHHhhcCCccccceEEEEEEeeecCCCCCccCCcccCCcccccceecccccch
Q 029857            1 MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSK   80 (186)
Q Consensus         1 mrfl~r~R~we~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~vi~RvrVrrGgrkrp~pkg~~~~kPk~~Gvn~lk~~~sl   80 (186)
                      |+||+|+|||||||+|+|+||++||||||||+||||||||||||||||++||+++|+|+++  ++|++||||+||+++||
T Consensus        20 ~~~L~r~R~~e~R~~~~i~Ri~rPtR~DrAR~LGYKAKqG~vi~RvRVRrGg~kr~~~kg~--~kpK~~Gv~~lk~~~~l   97 (194)
T d1vqom1          20 LAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVARVSVRKGSARKRRHKAG--RRSKRQGVTRITRRKDI   97 (194)
T ss_dssp             HHHHHHHHHHHHTTSCSEEEESSCTTHHHHHHTTCCSSTTEEEEEEEEECSSCCCCCCSSC--CCGGGCCCSSCCCSSCH
T ss_pred             HHHHHHHHHHHHhccCceeecCCCCchhHHHhcCcccCCcEEEEEEEEecCCCCCCCCCCC--CCCCcCcccccCccccH
Confidence            6899999999999999999999999999999999999999999999999999999999998  89999999999999999


Q ss_pred             hHHHHHHhhhccCCceeeeeeecccCCCceEEEEEEeeccccccccCCCCceeccCCcccccccCCccccccccCCCCCC
Q 029857           81 RSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKG  160 (186)
Q Consensus        81 q~iAEeR~grk~~nLrVLNSYwV~eD~~yK~fEVIlvDp~h~aIr~Dp~~~WI~~~~hkhRe~RGLTSAgkk~RGL~~kG  160 (186)
                      |+|||||||++||||||||||||+|||+|||||||||||+||+|++||+|||||+|+|||||||||||||+|+|||++||
T Consensus        98 q~iAEeRvgrk~~nLrVLNSYwV~qDg~yk~yEVILvDp~h~aIr~D~~~nWI~~~~hk~R~~RGlTSAGkk~RGLr~kG  177 (194)
T d1vqom1          98 QRVAEERASRTFPNLRVLNSYSVGQDGRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKG  177 (194)
T ss_dssp             HHHHHHHHHHHSTTCEEEEEEEEEECSSEEEEEEEEECTTCHHHHTCTTTGGGGSGGGTTGGGGTCSHHHHHHTTCSCSS
T ss_pred             HHHHHHHhcCcCCCcEeecceEecCCCceeEEEEEEecCCCcccccCCccccccCcccccchhcCCcccccccCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCCchhhhcc
Q 029857          161 HLHHKARPSRRATWKR  176 (186)
Q Consensus       161 ~~~~k~~~S~ra~w~r  176 (186)
                      |+++|++||.+|||++
T Consensus       178 ~~~~k~rpS~ran~~r  193 (194)
T d1vqom1         178 KGSEKTRPSLRSNGGK  193 (194)
T ss_dssp             TTCTTTSSCTTTTTTC
T ss_pred             CCcCcCCcccccccCC
Confidence            9999999999999986

>d1ffki_ d.12.1.2 (I:) Ribosomal protein L15e {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L15e
domain: Ribosomal protein L15e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=1.2e-102  Score=649.88  Aligned_cols=175  Identities=47%  Similarity=0.798  Sum_probs=172.7

Q ss_pred             ChhhHHHHHHHHhcCCceeEeCCCCchhHHhhcCCccccceEEEEEEeeecCCCCCccCCcccCCcccccceecccccch
Q 029857            1 MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSK   80 (186)
Q Consensus         1 mrfl~r~R~we~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~vi~RvrVrrGgrkrp~pkg~~~~kPk~~Gvn~lk~~~sl   80 (186)
                      |+||+|+|||||||+|+||||++||||||||+||||||||||||||||++||+++|+|+++  ++|++||||+||+++||
T Consensus        20 ~~~l~r~R~~e~R~~~~i~Ri~rPTR~DrAR~LGYKAKQG~vi~RvRVRrGgrkr~~~~~g--rrpk~~gv~~lk~~ksl   97 (194)
T d1ffki_          20 VGELMWHRLQKWRREPAVVRIPRPTRLDRARALGYKAKKGIIVVRVRIRRGGRRATRPNKG--RKSKKMMVNRRPRKKNL   97 (194)
T ss_pred             HHHHHHHHHHHHhccCceeecCCCCChhHHHhcCCccCceEEEEEEEeccCCCcCCCCCCC--ccCCCCcccccCccccH
Confidence            7899999999999999999999999999999999999999999999999999999999999  89999999999999999


Q ss_pred             hHHHHHHhhhccCCceeeeeeecccCCCceEEEEEEeeccccccccCCCCceeccCCcccccccCCccccccccCCCCCC
Q 029857           81 RSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKG  160 (186)
Q Consensus        81 q~iAEeR~grk~~nLrVLNSYwV~eD~~yK~fEVIlvDp~h~aIr~Dp~~~WI~~~~hkhRe~RGLTSAgkk~RGL~~kG  160 (186)
                      |+|||||||++||||||||||||+|||+|||||||||||+||+|++||+|||||+  |||||||||||||+|+|||+++|
T Consensus        98 q~iAEERv~rk~~nLrVLNSYWV~qDg~~k~yEVIlVDp~h~aIr~D~~~nWI~~--~k~R~~RGlTSAGkk~RGL~~kg  175 (194)
T d1ffki_          98 QWIAEERANRKYPNMEVLNSYWVGEDGRYKWFEVILVDRDHPAIKSDPQLSWVSR--TRGRVYRGLTSAGRKARGLRRKG  175 (194)
T ss_pred             HHHHHHHhhccCCCcEeeeeEEEcCCCceeEEEEEEecCCCcceeeCCCcCeeec--CCcchhcCCcccccccCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999997  99999999999999999999999


Q ss_pred             CcccccCCCchhhhcccce
Q 029857          161 HLHHKARPSRRATWKRNQT  179 (186)
Q Consensus       161 ~~~~k~~~S~ra~w~r~nt  179 (186)
                      ++++|++||.+|+|+++|.
T Consensus       176 ~~~~k~rpS~ra~~rr~nk  194 (194)
T d1ffki_         176 RGAEKVRPSLRANFRKKRR  194 (194)
T ss_pred             CCcCcCCcchhhhhhhccC
Confidence            9999999999999999983