Citrus Sinensis ID: 029944

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-----
Protein Sequence
MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKLARREERLAQVS
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHcccccEEEccccHHHHHHHHHHHHHHHHHHcccEEEcccccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHccccHHHEEEcHHHHHHHHccccHHHHHHHHHcccEEEccccccccHHHHHHHHHHHccccccHHHccccHHHHccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MVSLKLQKRLSASVlkcgrgkvwldpnevneisMANSRQNIRKLVKdgfiirkptkihSRSRARRMKEAKrkgrhsgygkrkgtrearlpTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKLARREERLAQVS
Flexible Loop (DISEMBL)
mvslklqkrlsasvlkcgrgkvwldpnevneismansrqnirklvkdgfiirkptkihsrsrarrmkeakrkgrhsgygkrkgtrearlptkilwmrrmRVLRRLLRKyreskkidkhmyhdMYMKVKGNVFKNKRVLMESIHkskaekarektlsdqfeakraknkasrerklarreerlaqvs
Low Complexity Region (SEG)
MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIlwmrrmrvlrrllrKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNkasrerklarreerlaQVS
Disordered region (IsUnstruct)
***********ASVLKCGRGKVWLDPNEVNEISMA**RQNIRKLVKDGFIIR************************************LPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVL***********************************************
Disordered Region (DISOPRED)
******QKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIH***********************************LWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKS**********************************RLA***
Disordered Region (DISEMBL)
MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTK*****************************EARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIH******************************************
Disordered Region (DISPRO)
**SLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPT********************************RLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKR**********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFExxxxxxxxxxxxxxxxxxxxxAQVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	185	2.2.26 [Sep-21-2011]
Q9LUQ6	209	60S ribosomal protein L19	yes	no	0.989	0.875	0.907	7e-93
Q9SRX2	214	60S ribosomal protein L19	no	no	0.989	0.855	0.918	7e-86
P49693	208	60S ribosomal protein L19	no	no	0.989	0.879	0.907	2e-84
P36241	203	60S ribosomal protein L19	yes	no	0.891	0.812	0.733	3e-68
P84100	196	60S ribosomal protein L19	yes	no	0.956	0.903	0.690	4e-59
Q5RB99	196	60S ribosomal protein L19	yes	no	0.956	0.903	0.690	4e-59
P84099	196	60S ribosomal protein L19	yes	no	0.956	0.903	0.690	4e-59
Q8HXN9	196	60S ribosomal protein L19	N/A	no	0.956	0.903	0.690	4e-59
P84098	196	60S ribosomal protein L19	yes	no	0.956	0.903	0.690	4e-59
D0VWQ5	196	60S ribosomal protein L19	yes	no	0.956	0.903	0.690	4e-59

>sp|Q9LUQ6|RL192_ARATH 60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1

 Score =  339 bits (869), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 166/183 (90%), Positives = 174/183 (95%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           MVSLK+QKRL+ASV+KCG+GKVWLDPNE  +ISMANSRQNIRKLVKDGFIIRKPTKIHSR
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRAR + EAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRR L KYRESKKID+HMY
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKLARREER 180
           HDMYMKVKGNVFKNKRVLMESIHK KAEKAREKTL+DQFEAKR KNKASRERK ARREER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRERKFARREER 180

Query: 181 LAQ 183
           LAQ
Sbjct: 181 LAQ 183

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRX2|RL191_ARATH 60S ribosomal protein L19-1 OS=Arabidopsis thaliana GN=RPL19A PE=2 SV=1

 Score =  316 bits (809), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 168/183 (91%), Positives = 179/183 (97%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           MVSLKLQKRL+ASV+KCG+GKVWLDPNE ++ISMANSRQNIRKLVKDGFIIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRAR+MK AK KGRHSGYGKRKGTREARLPTK+LWMRRMRVLRRLL+KYRE+KKIDKHMY
Sbjct: 61  SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKLARREER 180
           HDMYM+VKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERK ARREER
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREER 180

Query: 181 LAQ 183
           LA+
Sbjct: 181 LAK 183

Arabidopsis thaliana (taxid: 3702)

>sp|P49693|RL193_ARATH 60S ribosomal protein L19-3 OS=Arabidopsis thaliana GN=RPL19C PE=2 SV=3

 Score =  311 bits (796), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 166/183 (90%), Positives = 178/183 (97%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           MVSLKLQKRL++SVLKCG+ KVWLDPNE ++ISMANSRQNIRKLVKDGFIIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRAR++  AKRKGRHSGYGKRKGTREARLPTK+LWMRRMRVLRRLL+KYRE+KKID+HMY
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKLARREER 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERK ARREER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREER 180

Query: 181 LAQ 183
           LA+
Sbjct: 181 LAK 183

Arabidopsis thaliana (taxid: 3702)

>sp|P36241|RL19_DROME 60S ribosomal protein L19 OS=Drosophila melanogaster GN=RpL19 PE=1 SV=2

 Score =  257 bits (657), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 121/165 (73%), Positives = 142/165 (86%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           M SLKLQKRL+ASVL+CG+ KVWLDPNE+NEI+  NSRQNIRKL+KDG II+KP  +HSR
Sbjct: 1   MSSLKLQKRLAASVLRCGKKKVWLDPNEINEIANTNSRQNIRKLIKDGLIIKKPVVVHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
            R R+  EA+RKGRH G+GKRKGT  AR+PTK+LWM+R RVLRRLL+KYR+SKKID+H+Y
Sbjct: 61  YRVRKNTEARRKGRHCGFGKRKGTANARMPTKLLWMQRQRVLRRLLKKYRDSKKIDRHLY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 165
           HD+YMK KGNVFKNKRVLME IHK KAEK R K L+DQ EA+R K
Sbjct: 121 HDLYMKCKGNVFKNKRVLMEYIHKKKAEKQRSKMLADQAEARRQK 165

Drosophila melanogaster (taxid: 7227)

>sp|P84100|RL19_RAT 60S ribosomal protein L19 OS=Rattus norvegicus GN=Rpl19 PE=1 SV=1

 Score =  227 bits (578), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 125/181 (69%), Positives = 151/181 (83%), Gaps = 4/181 (2%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           +R R+   A+RKGRH G GKRKGT  AR+P K+ WMRRMR+LRRLLR+YRESKKID+HMY
Sbjct: 61  ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKLARREER 180
           H +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K K +R+    RREER
Sbjct: 121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARK----RREER 176

Query: 181 L 181
           L
Sbjct: 177 L 177

Rattus norvegicus (taxid: 10116)

>sp|Q5RB99|RL19_PONAB 60S ribosomal protein L19 OS=Pongo abelii GN=RPL19 PE=2 SV=1

 Score =  227 bits (578), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 125/181 (69%), Positives = 151/181 (83%), Gaps = 4/181 (2%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           +R R+   A+RKGRH G GKRKGT  AR+P K+ WMRRMR+LRRLLR+YRESKKID+HMY
Sbjct: 61  ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKLARREER 180
           H +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K K +R+    RREER
Sbjct: 121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARK----RREER 176

Query: 181 L 181
           L
Sbjct: 177 L 177

Pongo abelii (taxid: 9601)

>sp|P84099|RL19_MOUSE 60S ribosomal protein L19 OS=Mus musculus GN=Rpl19 PE=1 SV=1

 Score =  227 bits (578), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 125/181 (69%), Positives = 151/181 (83%), Gaps = 4/181 (2%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           +R R+   A+RKGRH G GKRKGT  AR+P K+ WMRRMR+LRRLLR+YRESKKID+HMY
Sbjct: 61  ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKLARREER 180
           H +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K K +R+    RREER
Sbjct: 121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARK----RREER 176

Query: 181 L 181
           L
Sbjct: 177 L 177

Mus musculus (taxid: 10090)

>sp|Q8HXN9|RL19_MACFA 60S ribosomal protein L19 OS=Macaca fascicularis GN=RPL19 PE=2 SV=2

 Score =  227 bits (578), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 125/181 (69%), Positives = 151/181 (83%), Gaps = 4/181 (2%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           +R R+   A+RKGRH G GKRKGT  AR+P K+ WMRRMR+LRRLLR+YRESKKID+HMY
Sbjct: 61  ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKLARREER 180
           H +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K K +R+    RREER
Sbjct: 121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARK----RREER 176

Query: 181 L 181
           L
Sbjct: 177 L 177

Macaca fascicularis (taxid: 9541)

>sp|P84098|RL19_HUMAN 60S ribosomal protein L19 OS=Homo sapiens GN=RPL19 PE=1 SV=1

 Score =  227 bits (578), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 125/181 (69%), Positives = 151/181 (83%), Gaps = 4/181 (2%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           +R R+   A+RKGRH G GKRKGT  AR+P K+ WMRRMR+LRRLLR+YRESKKID+HMY
Sbjct: 61  ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKLARREER 180
           H +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K K +R+    RREER
Sbjct: 121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARK----RREER 176

Query: 181 L 181
           L
Sbjct: 177 L 177

Homo sapiens (taxid: 9606)

>sp|D0VWQ5|RL19_CANFA 60S ribosomal protein L19 OS=Canis familiaris GN=RPL19 PE=1 SV=1

 Score =  227 bits (578), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 125/181 (69%), Positives = 151/181 (83%), Gaps = 4/181 (2%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           +R R+   A+RKGRH G GKRKGT  AR+P K+ WMRRMR+LRRLLR+YRESKKID+HMY
Sbjct: 61  ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKLARREER 180
           H +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K K +R+    RREER
Sbjct: 121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARK----RREER 176

Query: 181 L 181
           L
Sbjct: 177 L 177

Canis familiaris (taxid: 9615)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
351726632	212	uncharacterized protein LOC100527275 [Gl	0.989	0.863	0.994	2e-99
351721063	212	uncharacterized protein LOC100527501 [Gl	0.989	0.863	0.989	3e-99
351722819	212	uncharacterized protein LOC100499875 [Gl	0.989	0.863	0.989	3e-99
351721197	212	uncharacterized protein LOC100500446 [Gl	0.989	0.863	0.989	5e-99
449436477	213	PREDICTED: 60S ribosomal protein L19-2-l	0.989	0.859	0.983	7e-99
225431804	206	PREDICTED: 60S ribosomal protein L19-2 [	0.989	0.888	0.989	8e-99
388513907	212	unknown [Lotus japonicus]	0.989	0.863	0.989	1e-98
118483373	212	unknown [Populus trichocarpa]	0.989	0.863	0.983	1e-98
224120456	212	predicted protein [Populus trichocarpa]	0.989	0.863	0.983	1e-98
449469060	209	PREDICTED: 60S ribosomal protein L19-2-l	0.989	0.875	0.983	1e-98

>gi|351726632|ref|NP_001237389.1| uncharacterized protein LOC100527275 [Glycine max] gi|255631934|gb|ACU16334.1| unknown [Glycine max]

 Score =  366 bits (940), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 182/183 (99%), Positives = 183/183 (100%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKLARREER 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERK+ARREER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180

Query: 181 LAQ 183
           LAQ
Sbjct: 181 LAQ 183

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721063|ref|NP_001236941.1| uncharacterized protein LOC100527501 [Glycine max] gi|255632494|gb|ACU16597.1| unknown [Glycine max]

 Score =  365 bits (938), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 181/183 (98%), Positives = 183/183 (100%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           MVSLKLQKRL+ASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKLARREER 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERK+ARREER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180

Query: 181 LAQ 183
           LAQ
Sbjct: 181 LAQ 183

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722819|ref|NP_001237257.1| uncharacterized protein LOC100499875 [Glycine max] gi|255627313|gb|ACU14001.1| unknown [Glycine max]

 Score =  365 bits (938), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 181/183 (98%), Positives = 183/183 (100%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           MVSLKLQKRL+ASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKLARREER 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERK+ARREER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180

Query: 181 LAQ 183
           LAQ
Sbjct: 181 LAQ 183

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721197|ref|NP_001238225.1| uncharacterized protein LOC100500446 [Glycine max] gi|255630353|gb|ACU15533.1| unknown [Glycine max]

 Score =  365 bits (936), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 181/183 (98%), Positives = 183/183 (100%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           MVSLKLQKRL+ASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRARRMKEAK+KGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY
Sbjct: 61  SRARRMKEAKKKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKLARREER 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKLARREER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKLARREER 180

Query: 181 LAQ 183
           LAQ
Sbjct: 181 LAQ 183

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436477|ref|XP_004136019.1| PREDICTED: 60S ribosomal protein L19-2-like [Cucumis sativus] gi|449521235|ref|XP_004167635.1| PREDICTED: 60S ribosomal protein L19-2-like [Cucumis sativus]

 Score =  364 bits (935), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 180/183 (98%), Positives = 182/183 (99%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           MVSLKLQKRL+ASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRARRMKEAKRKGRHSGYGKR+GTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKLARREER 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERK ARREER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREER 180

Query: 181 LAQ 183
           LAQ
Sbjct: 181 LAQ 183

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431804|ref|XP_002272727.1| PREDICTED: 60S ribosomal protein L19-2 [Vitis vinifera] gi|296083322|emb|CBI22958.3| unnamed protein product [Vitis vinifera]

 Score =  364 bits (935), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 181/183 (98%), Positives = 183/183 (100%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           MVSLKLQKRL+ASVLKCGRGKVWLDPNEVNEISMANSRQN+RKLVKDGFIIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNVRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKLARREER 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKLARREER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKLARREER 180

Query: 181 LAQ 183
           LAQ
Sbjct: 181 LAQ 183

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513907|gb|AFK45015.1| unknown [Lotus japonicus]

 Score =  363 bits (933), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 181/183 (98%), Positives = 182/183 (99%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           MVSLKLQKRL+ASVLKCGRGKVWLDPNE NEISMANSRQNIRKLVKDGFIIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVLKCGRGKVWLDPNECNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKLARREER 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKLARREER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKLARREER 180

Query: 181 LAQ 183
           LAQ
Sbjct: 181 LAQ 183

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483373|gb|ABK93587.1| unknown [Populus trichocarpa]

 Score =  363 bits (933), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 180/183 (98%), Positives = 182/183 (99%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           MVSLKLQKRLSASVLKCG+GKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLSASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRARRMKEAKRKGRHSGYGKRKGTREARLPTK+LWMRRMRVLRRLLRKYRESKKIDKHMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKLARREER 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERK ARREER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREER 180

Query: 181 LAQ 183
           LAQ
Sbjct: 181 LAQ 183

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120456|ref|XP_002318334.1| predicted protein [Populus trichocarpa] gi|222859007|gb|EEE96554.1| predicted protein [Populus trichocarpa]

 Score =  363 bits (933), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 180/183 (98%), Positives = 182/183 (99%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           MVSLKLQKRLSASVLKCG+GKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLSASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRARRMKEAKRKGRHSGYGKRKGTREARLPTK+LWMRRMRVLRRLLRKYRESKKIDKHMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKLARREER 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERK ARREER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREER 180

Query: 181 LAQ 183
           LAQ
Sbjct: 181 LAQ 183

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469060|ref|XP_004152239.1| PREDICTED: 60S ribosomal protein L19-2-like [Cucumis sativus] gi|449484247|ref|XP_004156829.1| PREDICTED: 60S ribosomal protein L19-2-like [Cucumis sativus]

 Score =  363 bits (933), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 180/183 (98%), Positives = 183/183 (100%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           MVSLKLQKRL+ASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR
Sbjct: 1   MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRARRMKEAKRKGRHSGYGKR+GTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKLARREER 180
           HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERK+ARREER
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180

Query: 181 LAQ 183
           LAQ
Sbjct: 181 LAQ 183

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
TAIR|locus:2024695	214	emb2386 "embryo defective 2386	0.897	0.775	0.843	1.3e-70
TAIR|locus:2089383	209	AT3G16780 [Arabidopsis thalian	0.897	0.794	0.831	8.9e-70
TAIR|locus:2137854	208	AT4G02230 [Arabidopsis thalian	0.897	0.798	0.831	3e-69
FB|FBgn0002607	203	RpL19 "Ribosomal protein L19"	0.891	0.812	0.666	3.3e-56
UNIPROTKB|Q3T0W9	196	RPL19 "60S ribosomal protein L	0.891	0.841	0.636	8.9e-54
UNIPROTKB|D0VWQ5	196	RPL19 "60S ribosomal protein L	0.891	0.841	0.636	8.9e-54
UNIPROTKB|P84098	196	RPL19 "60S ribosomal protein L	0.891	0.841	0.636	8.9e-54
MGI|MGI:98020	196	Rpl19 "ribosomal protein L19"	0.891	0.841	0.636	8.9e-54
RGD|621183	196	Rpl19 "ribosomal protein L19"	0.891	0.841	0.636	8.9e-54
UNIPROTKB|J3KTE4	194	RPL19 "Ribosomal protein L19"	0.875	0.835	0.641	1.5e-53

TAIR|locus:2024695 emb2386 "embryo defective 2386" [Arabidopsis thaliana (taxid:3702)]

 Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
 Identities = 140/166 (84%), Positives = 149/166 (89%)

Query:     1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
             MVSLKLQKRL+ASV+KCG+GKVWLDPNE ++ISMANSRQNIRKLVKDGFIIRKPTKIHSR
Sbjct:     1 MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query:    61 SRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMY 120
             SRAR+MK AK KGRHSGYGKRKGTREARLPTK+              KYRE+KKIDKHMY
Sbjct:    61 SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120

Query:   121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166
             HDMYM+VKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN
Sbjct:   121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2089383 AT3G16780 [Arabidopsis thaliana (taxid:3702)]

 Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
 Identities = 138/166 (83%), Positives = 146/166 (87%)

Query:     1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
             MVSLK+QKRL+ASV+KCG+GKVWLDPNE  +ISMANSRQNIRKLVKDGFIIRKPTKIHSR
Sbjct:     1 MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query:    61 SRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMY 120
             SRAR + EAKRKGRHSGYGKRKGTREARLPTKI              KYRESKKID+HMY
Sbjct:    61 SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query:   121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166
             HDMYMKVKGNVFKNKRVLMESIHK KAEKAREKTL+DQFEAKR KN
Sbjct:   121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKN 166

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2137854 AT4G02230 [Arabidopsis thaliana (taxid:3702)]

 Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
 Identities = 138/166 (83%), Positives = 148/166 (89%)

Query:     1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
             MVSLKLQKRL++SVLKCG+ KVWLDPNE ++ISMANSRQNIRKLVKDGFIIRKPTKIHSR
Sbjct:     1 MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query:    61 SRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMY 120
             SRAR++  AKRKGRHSGYGKRKGTREARLPTK+              KYRE+KKID+HMY
Sbjct:    61 SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query:   121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166
             HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN
Sbjct:   121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

FB|FBgn0002607 RpL19 "Ribosomal protein L19" [Drosophila melanogaster (taxid:7227)]

 Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
 Identities = 110/165 (66%), Positives = 129/165 (78%)

Query:     1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
             M SLKLQKRL+ASVL+CG+ KVWLDPNE+NEI+  NSRQNIRKL+KDG II+KP  +HSR
Sbjct:     1 MSSLKLQKRLAASVLRCGKKKVWLDPNEINEIANTNSRQNIRKLIKDGLIIKKPVVVHSR 60

Query:    61 SRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMY 120
              R R+  EA+RKGRH G+GKRKGT  AR+PTK+              KYR+SKKID+H+Y
Sbjct:    61 YRVRKNTEARRKGRHCGFGKRKGTANARMPTKLLWMQRQRVLRRLLKKYRDSKKIDRHLY 120

Query:   121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 165
             HD+YMK KGNVFKNKRVLME IHK KAEK R K L+DQ EA+R K
Sbjct:   121 HDLYMKCKGNVFKNKRVLMEYIHKKKAEKQRSKMLADQAEARRQK 165

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA;NAS

GO:0006412 "translation" evidence=ISS

GO:0005840 "ribosome" evidence=IDA;NAS

GO:0000022 "mitotic spindle elongation" evidence=IMP

GO:0051298 "centrosome duplication" evidence=IMP

UNIPROTKB|Q3T0W9 RPL19 "60S ribosomal protein L19" [Bos taurus (taxid:9913)]

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 105/165 (63%), Positives = 128/165 (77%)

Query:     1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
             M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR
Sbjct:     1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60

Query:    61 SRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMY 120
             +R R+   A+RKGRH G GKRKGT  AR+P K+              +YRESKKID+HMY
Sbjct:    61 ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120

Query:   121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 165
             H +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K
Sbjct:   121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|D0VWQ5 RPL19 "60S ribosomal protein L19" [Canis lupus familiaris (taxid:9615)]

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 105/165 (63%), Positives = 128/165 (77%)

Query:     1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
             M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR
Sbjct:     1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60

Query:    61 SRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMY 120
             +R R+   A+RKGRH G GKRKGT  AR+P K+              +YRESKKID+HMY
Sbjct:    61 ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120

Query:   121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 165
             H +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K
Sbjct:   121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|P84098 RPL19 "60S ribosomal protein L19" [Homo sapiens (taxid:9606)]

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 105/165 (63%), Positives = 128/165 (77%)

Query:     1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
             M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR
Sbjct:     1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60

Query:    61 SRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMY 120
             +R R+   A+RKGRH G GKRKGT  AR+P K+              +YRESKKID+HMY
Sbjct:    61 ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120

Query:   121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 165
             H +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K
Sbjct:   121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165

GO:0003723 "RNA binding" evidence=TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS;TAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA;TAS

GO:0006412 "translation" evidence=NAS;TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

MGI|MGI:98020 Rpl19 "ribosomal protein L19" [Mus musculus (taxid:10090)]

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 105/165 (63%), Positives = 128/165 (77%)

Query:     1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
             M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR
Sbjct:     1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60

Query:    61 SRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMY 120
             +R R+   A+RKGRH G GKRKGT  AR+P K+              +YRESKKID+HMY
Sbjct:    61 ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120

Query:   121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 165
             H +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K
Sbjct:   121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165

GO:0003735 "structural constituent of ribosome" evidence=IDA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IC

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO;IDA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

RGD|621183 Rpl19 "ribosomal protein L19" [Rattus norvegicus (taxid:10116)]

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 105/165 (63%), Positives = 128/165 (77%)

Query:     1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
             M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR
Sbjct:     1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60

Query:    61 SRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMY 120
             +R R+   A+RKGRH G GKRKGT  AR+P K+              +YRESKKID+HMY
Sbjct:    61 ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120

Query:   121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 165
             H +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K
Sbjct:   121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISO

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA;ISO

UNIPROTKB|J3KTE4 RPL19 "Ribosomal protein L19" [Homo sapiens (taxid:9606)]

 Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
 Identities = 104/162 (64%), Positives = 127/162 (78%)

Query:     4 LKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRA 63
             L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R 
Sbjct:     2 LRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARC 61

Query:    64 RRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDM 123
             R+   A+RKGRH G GKRKGT  AR+P K+              +YRESKKID+HMYH +
Sbjct:    62 RKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSL 121

Query:   124 YMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 165
             Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K
Sbjct:   122 YLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 163

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8HXN9	RL19_MACFA	No assigned EC number	0.6906	0.9567	0.9030	N/A	no
P05734	RL19A_SCHPO	No assigned EC number	0.6518	0.8540	0.8186	yes	no
P0CX83	RL19B_YEAST	No assigned EC number	0.6024	0.8972	0.8783	yes	no
P0CX82	RL19A_YEAST	No assigned EC number	0.6024	0.8972	0.8783	yes	no
O02639	RL19_CAEEL	No assigned EC number	0.6137	1.0	0.9343	yes	no
P0DJ60	RL19_TETTS	No assigned EC number	0.6684	0.9675	0.9675	N/A	no
Q9SRX2	RL191_ARATH	No assigned EC number	0.9180	0.9891	0.8551	no	no
Q6P5L3	RL19_DANRE	No assigned EC number	0.6867	0.8972	0.8469	yes	no
P14329	RL19_DICDI	No assigned EC number	0.6590	0.9513	0.9462	yes	no
Q7ZYS1	RL19_XENLA	No assigned EC number	0.6961	0.9567	0.8984	N/A	no
P49693	RL193_ARATH	No assigned EC number	0.9071	0.9891	0.8798	no	no
D0VWQ5	RL19_CANFA	No assigned EC number	0.6906	0.9567	0.9030	yes	no
Q3IMX0	RL19E_NATPD	No assigned EC number	0.3624	0.8054	1.0	yes	no
P36241	RL19_DROME	No assigned EC number	0.7333	0.8918	0.8128	yes	no
Q5RB99	RL19_PONAB	No assigned EC number	0.6906	0.9567	0.9030	yes	no
P84099	RL19_MOUSE	No assigned EC number	0.6906	0.9567	0.9030	yes	no
P84098	RL19_HUMAN	No assigned EC number	0.6906	0.9567	0.9030	yes	no
Q9LUQ6	RL192_ARATH	No assigned EC number	0.9071	0.9891	0.8755	yes	no
Q3T0W9	RL19_BOVIN	No assigned EC number	0.6906	0.9567	0.9030	yes	no
O42699	RL19B_SCHPO	No assigned EC number	0.6645	0.8540	0.8186	yes	no
Q90YU8	RL19_ICTPU	No assigned EC number	0.6927	0.8972	0.8469	N/A	no
P84100	RL19_RAT	No assigned EC number	0.6906	0.9567	0.9030	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_XII0631	RecName- Full=Ribosomal protein L19; (212 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pg.C_LG_X1707	RecName- Full=60S acidic ribosomal protein P0; (321 aa)			•	•	•	•	•		0.650
	estExt_fgenesh4_pm.C_LG_VIII0253	RecName- Full=60S acidic ribosomal protein P0; (323 aa)			•	•	•	•	•		0.649
	estExt_fgenesh4_pg.C_LG_I2806	hypothetical protein (218 aa)				•			•		0.598
	estExt_Genewise1_v1.C_LG_IX3421	RecName- Full=Ribosomal protein S8; (219 aa)				•			•		0.596
	grail3.0053004502	RecName- Full=Ribosomal protein S8; (220 aa)				•			•		0.592
	estExt_Genewise1_v1.C_1230114	hypothetical protein (221 aa)				•			•		0.591
	eugene3.00091453	SubName- Full=Putative uncharacterized protein; (151 aa)			•	•					0.539
	estExt_fgenesh4_pg.C_LG_XI0480	SubName- Full=Putative uncharacterized protein; (151 aa)			•	•					0.538
	estExt_fgenesh4_kg.C_LG_IV0037	SubName- Full=Putative uncharacterized protein; (152 aa)			•	•					0.535
	gw1.XVI.1402.1	hypothetical protein (482 aa)	•		•	•			•		0.524

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	185
cd01417	164	cd01417, Ribosomal_L19e_E, Ribosomal protein L19e,	1e-80
PTZ00097	175	PTZ00097, PTZ00097, 60S ribosomal protein L19; Pro	2e-78
pfam01280	148	pfam01280, Ribosomal_L19e, Ribosomal protein L19e	7e-65
cd00481	145	cd00481, Ribosomal_L19e, Ribosomal protein L19e	2e-64
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	1e-56
COG2147	150	COG2147, RPL19A, Ribosomal protein L19E [Translati	5e-45
PRK08570	150	PRK08570, rpl19e, 50S ribosomal protein L19e; Revi	3e-38
cd01418	145	cd01418, Ribosomal_L19e_A, Ribosomal protein L19e,	5e-32

>gnl|CDD|238705 cd01417, Ribosomal_L19e_E, Ribosomal protein L19e, eukaryotic

 Score =  236 bits (604), Expect = 1e-80
 Identities = 129/164 (78%), Positives = 150/164 (91%)

Query: 4   LKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRA 63
           L+LQKRL+ASVLKCG+ KVWLDPNE++EIS ANSRQ+IRKL+KDG II+KP K+HSRSRA
Sbjct: 1   LRLQKRLAASVLKCGKRKVWLDPNEISEISNANSRQSIRKLIKDGLIIKKPVKVHSRSRA 60

Query: 64  RRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDM 123
           R+  EAKRKGRH GYGKRKGT  AR+P+K+LWMRR RVLRRLL+KYRESKKIDKH+YH++
Sbjct: 61  RKRHEAKRKGRHMGYGKRKGTANARMPSKVLWMRRQRVLRRLLKKYRESKKIDKHLYHEL 120

Query: 124 YMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNK 167
           Y+K KGNVFKNKRVLME IHK+KAEKAREK L+DQ EA+RAKNK
Sbjct: 121 YLKAKGNVFKNKRVLMEHIHKAKAEKAREKELADQAEARRAKNK 164

L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits. Length = 164

>gnl|CDD|185443 PTZ00097, PTZ00097, 60S ribosomal protein L19; Provisional

 Score =  230 bits (589), Expect = 2e-78
 Identities = 123/174 (70%), Positives = 151/174 (86%)

Query: 3   SLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSR 62
           +L+LQKRL+ASVLKCG+ +VWLDPNE +EIS+ANSR +IRKL+KDG IIRKP  +HSR+R
Sbjct: 1   NLRLQKRLAASVLKCGKNRVWLDPNEASEISLANSRFSIRKLIKDGLIIRKPVAVHSRAR 60

Query: 63  ARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHD 122
           ARR  EAKRKGRH+G GKR+GTREAR+PTK+LWMRR RVLRRLLRKYR +KKID+HMYH+
Sbjct: 61  ARRFHEAKRKGRHTGIGKRRGTREARMPTKVLWMRRQRVLRRLLRKYRAAKKIDRHMYHE 120

Query: 123 MYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKLAR 176
            Y+K KGN FKNKRVL+E+IHK+K EK +EK + DQ EA+RAK KA R ++ A+
Sbjct: 121 FYLKSKGNQFKNKRVLIEAIHKTKNEKVKEKKIQDQLEARRAKAKALRNKRKAK 174

Length = 175

>gnl|CDD|201707 pfam01280, Ribosomal_L19e, Ribosomal protein L19e

 Score =  195 bits (499), Expect = 7e-65
 Identities = 93/148 (62%), Positives = 117/148 (79%)

Query: 2   VSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRS 61
           + LKLQKRL+A VL CG+ +VW+DPNE+ EI+ A +R++IRKL+KDG II+KP K HSR 
Sbjct: 1   MDLKLQKRLAADVLGCGKNRVWIDPNELEEIADAITREDIRKLIKDGLIIKKPKKGHSRG 60

Query: 62  RARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYH 121
           RAR+ KE +RKGRH G G RKGT+ AR+P K LW+RR+R LRRLLR+ R++ KIDKH Y 
Sbjct: 61  RARKRKEKRRKGRHRGPGSRKGTKGARMPKKELWIRRIRALRRLLRELRDAGKIDKHTYR 120

Query: 122 DMYMKVKGNVFKNKRVLMESIHKSKAEK 149
           ++Y K KG VFKNK  L E IHK+KAEK
Sbjct: 121 ELYRKAKGGVFKNKAHLKEYIHKAKAEK 148

Length = 148

>gnl|CDD|238268 cd00481, Ribosomal_L19e, Ribosomal protein L19e

 Score =  194 bits (496), Expect = 2e-64
 Identities = 95/145 (65%), Positives = 121/145 (83%)

Query: 4   LKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRA 63
           L+LQKRL+A +LKCG+ +VW+DPNE+ EI+ AN+R++IRKL+KDG II+KP K HSR RA
Sbjct: 1   LRLQKRLAADILKCGKNRVWIDPNELEEIANANTREDIRKLIKDGLIIKKPKKGHSRGRA 60

Query: 64  RRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDM 123
           R+  EA+RKGRH G G RKGT+ AR+P+K LW+RR+R LRRLL+K R+S KIDKH Y ++
Sbjct: 61  RKRHEARRKGRHRGPGSRKGTKGARMPSKELWIRRIRALRRLLKKLRDSGKIDKHTYREL 120

Query: 124 YMKVKGNVFKNKRVLMESIHKSKAE 148
           Y+K KGNVFKNKR L E IHK+KAE
Sbjct: 121 YLKAKGNVFKNKRHLKEYIHKAKAE 145

L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits. Length = 145

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score =  181 bits (460), Expect = 1e-56
 Identities = 117/179 (65%), Positives = 148/179 (82%), Gaps = 2/179 (1%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           MVSLKLQ RL+A +L+CGR +VWLDPNE +EIS ANSR+++RKL+KDG IIRKP K+HSR
Sbjct: 1   MVSLKLQARLAADILRCGRHRVWLDPNEASEISNANSRKSVRKLIKDGLIIRKPVKVHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SR R MKEAK  GRH G G+R+GTREAR+P+K LWMRR+R+LRRLLRKYRE KKID+H+Y
Sbjct: 61  SRWRHMKEAKSMGRHEGAGRREGTREARMPSKELWMRRLRILRRLLRKYREEKKIDRHIY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKLARREE 179
            ++Y+K KGNVF+NKR LME IHK K EK +E+ L++Q  AKR K++  R +  AR++E
Sbjct: 121 RELYVKAKGNVFRNKRNLMEHIHKVKNEKKKERQLAEQLAAKRLKDEQHRHK--ARKQE 177

Length = 357

>gnl|CDD|225058 COG2147, RPL19A, Ribosomal protein L19E [Translation, ribosomal structure and biogenesis]

 Score =  145 bits (368), Expect = 5e-45
 Identities = 74/149 (49%), Positives = 99/149 (66%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           M +L+ QKRL+A +L  G  +VW+DPNE+ EI+ A +R++IR L+KDG I  KP K  SR
Sbjct: 1   MSNLRTQKRLAADILGVGENRVWIDPNEIEEIASAITREDIRALIKDGVIKAKPKKGISR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
            RAR+    K+KGR  G G RKGT+ AR+P+K  W++R+R LRR LRK R+  KIDKH Y
Sbjct: 61  GRARKRHAQKKKGRRRGPGSRKGTKGARMPSKERWIKRIRALRRELRKLRDDGKIDKHTY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEK 149
             +Y   KG  FK+K  L   I ++K  K
Sbjct: 121 RKLYRMAKGGAFKSKSHLKSYIEEAKLLK 149

Length = 150

>gnl|CDD|236295 PRK08570, rpl19e, 50S ribosomal protein L19e; Reviewed

 Score =  128 bits (323), Expect = 3e-38
 Identities = 61/138 (44%), Positives = 87/138 (63%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           M+ L  QKRL+A +L  G  +VW+DP  + +++ A +R++IR+L+K+G I  KP K  SR
Sbjct: 1   MMDLSAQKRLAADILGVGVSRVWIDPEALEDVAEAITREDIRELIKEGVIKAKPKKGISR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
            RAR   E ++KGR  G G RKG + AR P K  W+ R+R LRR LR+ R+  KID+  Y
Sbjct: 61  GRARERHEKRKKGRRRGPGSRKGKKGARTPKKERWINRIRALRRYLRELRDEGKIDRKTY 120

Query: 121 HDMYMKVKGNVFKNKRVL 138
             +Y K KG  F++   L
Sbjct: 121 RKLYRKAKGGEFRSVSHL 138

Length = 150

>gnl|CDD|238706 cd01418, Ribosomal_L19e_A, Ribosomal protein L19e, archaeal

 Score =  112 bits (281), Expect = 5e-32
 Identities = 56/132 (42%), Positives = 81/132 (61%)

Query: 4   LKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRA 63
           L  Q+RL+A +L  G  +VW+DP  + E++ A +R +IR L+K+G I  KP K  SR R 
Sbjct: 1   LSSQRRLAADILGVGINRVWIDPERLEEVAEAITRDDIRALIKEGVIKAKPKKGISRGRL 60

Query: 64  RRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDM 123
           +   E ++KGR  G G RKG + AR P K  W++ +R LRR L++ R+  KIDK  Y  +
Sbjct: 61  KERHEKRKKGRRRGPGSRKGKKGARTPKKERWIKTIRALRRYLKELRDKGKIDKKTYRKL 120

Query: 124 YMKVKGNVFKNK 135
           Y K KG  F++ 
Sbjct: 121 YRKAKGGSFRSL 132

L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits. Length = 145

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	185
KOG1696	193	consensus 60s ribosomal protein L19 [Translation,	100.0
PTZ00097	175	60S ribosomal protein L19; Provisional	100.0
cd01417	164	Ribosomal_L19e_E Ribosomal protein L19e, eukaryoti	100.0
PTZ00436	357	60S ribosomal protein L19-like protein; Provisiona	100.0
PF01280	148	Ribosomal_L19e: Ribosomal protein L19e; InterPro:	100.0
PRK08570	150	rpl19e 50S ribosomal protein L19e; Reviewed	100.0
cd00481	145	Ribosomal_L19e Ribosomal protein L19e. L19e is fou	100.0
cd01418	145	Ribosomal_L19e_A Ribosomal protein L19e, archaeal.	100.0
COG2147	150	RPL19A Ribosomal protein L19E [Translation, riboso	100.0

>KOG1696 consensus 60s ribosomal protein L19 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.9e-82  Score=522.88  Aligned_cols=183  Identities=75%  Similarity=1.141  Sum_probs=181.4

Q ss_pred             CCchhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCC
Q 029944            1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK   80 (185)
Q Consensus         1 M~~l~~QKRLAa~vL~cG~~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~SR~R~r~~~~~r~kGR~~G~Gk   80 (185)
                      |++|++|||||||||+||+.+|||||||+++|++|||||+|++||+||+||.+|+++|||+||+++.+++++|||+|+|+
T Consensus         1 Ms~lrlqKRLAssVl~cGKkKvWlDpNE~~eI~~ansRq~irkLikdg~iI~Kp~~vhsr~r~rk~~~akrkgrH~G~GK   80 (193)
T KOG1696|consen    1 MSNLRLQKRLAASVLKCGKKKVWLDPNEISEISGANSRQNIRKLIKDGLIIRKPVTVHSRSRCRKRLEAKRKGRHMGYGK   80 (193)
T ss_pred             CchHHHHHHHHHHHHHhcccceeeCccHHHHhcccchHHHHHHHHhCCeEeecchhhhHHHHHHHHHHHHHhccccCccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCcchHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHhhhcCCccccHHHHHHHHHHhhhHHHHhhhhhHHHH
Q 029944           81 RKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE  160 (185)
Q Consensus        81 RkGt~~AR~p~K~~Wm~riR~lRr~Lk~~re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~i~~~k~e~~r~k~l~dQae  160 (185)
                      |+||+|||||+|++||++||+||++|++|||+|+||+|+||.||+++|||+|+|+.+|+||||+.++|++++|+|+||||
T Consensus        81 RkGTanArmP~k~~Wmrr~RvlRrlL~kyR~skKIdkh~YH~lY~k~KGnvFKnK~~LmE~I~K~KAe~~r~K~LadQae  160 (193)
T KOG1696|consen   81 RKGTANARMPSKVLWMRRMRVLRRLLKKYRDSKKIDKHMYHDLYLKVKGNVFKNKRVLMEHIHKSKAEKAREKLLADQAE  160 (193)
T ss_pred             ccccccccCchhHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhchHHHHHHHHHHHHHHHhh
Q 029944          161 AKRAKNKASRERKLARREERLAQ  183 (185)
Q Consensus       161 A~r~k~k~~r~rr~~~~~~kk~~  183 (185)
                      |++.++++++++++|++++++++
T Consensus       161 Arr~k~k~ar~rreer~~~k~~~  183 (193)
T KOG1696|consen  161 ARRLKNKAARKRREERLAAKPQE  183 (193)
T ss_pred             HHHhhhHHHhhhHHHHHhhchhh
Confidence            99999999999999999998864

>PTZ00097 60S ribosomal protein L19; Provisional

Probab=100.00  E-value=9e-80  Score=507.78  Aligned_cols=174  Identities=71%  Similarity=1.152  Sum_probs=171.3

Q ss_pred             chhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCCcc
Q 029944            3 SLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRK   82 (185)
Q Consensus         3 ~l~~QKRLAa~vL~cG~~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~SR~R~r~~~~~r~kGR~~G~GkRk   82 (185)
                      +|++||||||+||+||+++||||||+++||++||||+|||+||+||+|+++|++||||||++++++++++|||+|||||+
T Consensus         1 ~l~~QKRLAA~vL~cG~~rVWiDP~~~~eI~~A~tR~dIR~LIkdG~I~~kp~kg~SR~R~r~~~~~k~kGR~~G~G~RK   80 (175)
T PTZ00097          1 NLRLQKRLAASVLKCGKNRVWLDPNEASEISLANSRFSIRKLIKDGLIIRKPVAVHSRARARRFHEAKRKGRHTGIGKRR   80 (175)
T ss_pred             CchHHHHHHHHHHCCCCCceeeCHHHHHHHHHhhhHHHHHHHHHCCCeeecCCCCCChHHHHHHHHHHHhCCCCCCCCCc
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCcchHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHhhhcCCccccHHHHHHHHHHhhhHHHHhhhhhHHHHHH
Q 029944           83 GTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAK  162 (185)
Q Consensus        83 Gt~~AR~p~K~~Wm~riR~lRr~Lk~~re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~i~~~k~e~~r~k~l~dQaeA~  162 (185)
                      ||+|||+|+|+.||.+||+||++|++|||+|+||+|+||.||++||||+|+|++||++||++.++|++++++|+||+||+
T Consensus        81 Gtk~AR~p~K~~W~~riR~lRr~Lk~~R~~~kIdk~~Yr~lY~kaKGn~Fknk~~L~~~I~~~kae~~r~k~l~~q~~a~  160 (175)
T PTZ00097         81 GTREARMPTKVLWMRRQRVLRRLLRKYRAAKKIDRHMYHEFYLKSKGNQFKNKRVLIEAIHKTKNEKVKEKKIQDQLEAR  160 (175)
T ss_pred             CcccccCcHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhchHHHHHHHHHH
Q 029944          163 RAKNKASRERKLAR  176 (185)
Q Consensus       163 r~k~k~~r~rr~~~  176 (185)
                      +.+++++++++.++
T Consensus       161 r~k~~~~~~~r~~~  174 (175)
T PTZ00097        161 RAKAKALRNKRKAK  174 (175)
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999999987653

>cd01417 Ribosomal_L19e_E Ribosomal protein L19e, eukaryotic

Probab=100.00  E-value=2.3e-78  Score=495.37  Aligned_cols=164  Identities=79%  Similarity=1.221  Sum_probs=161.9

Q ss_pred             hhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCCccc
Q 029944            4 LKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKG   83 (185)
Q Consensus         4 l~~QKRLAa~vL~cG~~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~SR~R~r~~~~~r~kGR~~G~GkRkG   83 (185)
                      |++|+||||+||+||+++||||||+++||++||||+|||+||+||+|+++|++||||||++++++++++|||+|+|||+|
T Consensus         1 l~~QKRLAA~vL~cG~~rVW~DP~~~~eI~~A~tR~dIR~LIkdG~I~~kp~kg~SR~R~r~~~~~k~kGR~~G~G~RkG   80 (164)
T cd01417           1 LRLQKRLAASVLKCGKRKVWLDPNEISEISNANSRQSIRKLIKDGLIIKKPVKVHSRSRARKRHEAKRKGRHMGYGKRKG   80 (164)
T ss_pred             CcHHHHHHHHHHCCCCCceeeCHHHHHHHHHhhhHHHHHHHHHCCCeeecCCCcCCHHHHHHHHHHHHhCCCCCCCCCcC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCcchHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHhhhcCCccccHHHHHHHHHHhhhHHHHhhhhhHHHHHHH
Q 029944           84 TREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKR  163 (185)
Q Consensus        84 t~~AR~p~K~~Wm~riR~lRr~Lk~~re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~i~~~k~e~~r~k~l~dQaeA~r  163 (185)
                      |+|||+|+|+.||++||+||++|++|||+|+||+|+||.||++||||+|+|++||++||++.++|+++++.|+||+||++
T Consensus        81 t~~AR~p~K~~W~~riR~lRr~Lk~~R~~~kIdk~~Yr~lY~kaKGn~Fknk~~L~~~I~~~kae~~r~k~l~~q~~a~r  160 (164)
T cd01417          81 TANARMPSKVLWMRRQRVLRRLLKKYRESKKIDKHLYHELYLKAKGNVFKNKRVLMEHIHKAKAEKAREKELADQAEARR  160 (164)
T ss_pred             cccccCcHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hchH
Q 029944          164 AKNK  167 (185)
Q Consensus       164 ~k~k  167 (185)
                      ++++
T Consensus       161 ~~~~  164 (164)
T cd01417         161 AKNK  164 (164)
T ss_pred             hccC
Confidence            8863

L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.

>PTZ00436 60S ribosomal protein L19-like protein; Provisional

Probab=100.00  E-value=1.8e-76  Score=522.57  Aligned_cols=170  Identities=67%  Similarity=1.101  Sum_probs=168.0

Q ss_pred             CCchhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCC
Q 029944            1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK   80 (185)
Q Consensus         1 M~~l~~QKRLAa~vL~cG~~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~SR~R~r~~~~~r~kGR~~G~Gk   80 (185)
                      |++|++||||||+||+||++|||||||+++||++||||+|||+||+||+|+++|++||||||+|++++++++|||+|+||
T Consensus         1 M~dLklQKRLAAsVL~cGk~RVWiDPnel~eIa~AiTReDIRkLIkdGlIikKp~KGhSRgRaRkr~eaKrKGRhrG~Gs   80 (357)
T PTZ00436          1 MVSLKLQARLAADILRCGRHRVWLDPNEASEISNANSRKSVRKLIKDGLIIRKPVKVHSRSRWRHMKEAKSMGRHEGAGR   80 (357)
T ss_pred             CcchHHHHHHHHHHhCCCCCceeeCHHHHHHHHHhhhHHHHHHHHHCCCeeecCcccCChHHHHHHHHHHHhCcCCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCcchHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHhhhcCCccccHHHHHHHHHHhhhHHHHhhhhhHHHH
Q 029944           81 RKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE  160 (185)
Q Consensus        81 RkGt~~AR~p~K~~Wm~riR~lRr~Lk~~re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~i~~~k~e~~r~k~l~dQae  160 (185)
                      |+||+|||+|+|++||++||+||++|++|||+|+||+|+||.||+++|||+|+|++||++||++.++|+.++++|.||++
T Consensus        81 RKGTk~AR~P~K~~WIrRIRaLRRlLKklRd~gKIDkh~YR~LYrKAKGn~FKNK~~L~e~I~k~KaE~~R~K~L~dQ~e  160 (357)
T PTZ00436         81 REGTREARMPSKELWMRRLRILRRLLRKYREEKKIDRHIYRELYVKAKGNVFRNKRNLMEHIHKVKNEKKKERQLAEQLA  160 (357)
T ss_pred             CcCcccccCcHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhchHHHH
Q 029944          161 AKRAKNKASR  170 (185)
Q Consensus       161 A~r~k~k~~r  170 (185)
                      |+|.++++.|
T Consensus       161 ArR~k~~~~r  170 (357)
T PTZ00436        161 AKRLKDEQHR  170 (357)
T ss_pred             HHHHHhhhhh
Confidence            9999988654

>PF01280 Ribosomal_L19e: Ribosomal protein L19e; InterPro: IPR000196 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=3.3e-74  Score=464.89  Aligned_cols=148  Identities=68%  Similarity=1.093  Sum_probs=130.9

Q ss_pred             CchhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCCc
Q 029944            2 VSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKR   81 (185)
Q Consensus         2 ~~l~~QKRLAa~vL~cG~~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~SR~R~r~~~~~r~kGR~~G~GkR   81 (185)
                      |||++||||||+||+||+++|||||||++||++||||+|||+||+||+|+++|++|||||||+++++++++|||+|||+|
T Consensus         1 m~l~~QKRLAa~vL~~G~~rVw~DP~~~~eI~~A~tR~~IR~LIk~G~I~~k~~k~~Sr~R~r~~~~~r~kGr~~G~G~R   80 (148)
T PF01280_consen    1 MDLKLQKRLAASVLGCGKNRVWIDPNELEEIANAITREDIRKLIKDGLIIKKPVKGHSRGRARKRKEARRKGRHRGPGKR   80 (148)
T ss_dssp             -STHHHHHHHHHHHTS-GGGEEE-STTHHHHHH--SHHHHHHHHHTTSEEE---S--STHHHHHHHHHHHCTTS-SSTTS
T ss_pred             CccHHHHHHHHHHHCCCCCcEEeCHHHHHHHHhhhhHHHHHHHHHCCCeEeCCCCCCchHHHHHHHHHHhhccccccccc
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCcchHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHhhhcCCccccHHHHHHHHHHhhhHH
Q 029944           82 KGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEK  149 (185)
Q Consensus        82 kGt~~AR~p~K~~Wm~riR~lRr~Lk~~re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~i~~~k~e~  149 (185)
                      +||+|||+|+|+.||.+||+||++|++|||+|+||+|+||.||++||||+|+|++||++||+++++|+
T Consensus        81 kGt~~AR~~~K~~W~~riR~lRr~Lk~~r~~~kID~~~Yr~lY~kaKGn~Fkn~~~L~~~i~~~k~e~  148 (148)
T PF01280_consen   81 KGTKNARMPEKELWMRRIRALRRLLKRLRDSGKIDRHMYRSLYRKAKGNVFKNKRHLMEHIHKLKAEK  148 (148)
T ss_dssp             -S-HHHHS-HHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHTTS-SSHHHHHHHHHHHHHCH
T ss_pred             cccccccccHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCcccCHHHHHHHHHHhccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999875

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents structural domain of the ribosomal protein L19 from eukaryotes, as well as L19e from archaea []. L19/L19e is absent in bacteria. L19/L19e is part of the large ribosomal subunit, whose structure has been determined in a number of eukaryotic and archaeal species []. L19/L19e is a multi-helical protein consisting of two different 3-helical domains connected by a long, partly helical linker.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_T 3O58_S 3O5H_S 3IZS_T 2WWA_J 1S1I_P 2WW9_J 2ZKR_7 4A1A_O 4A1C_O ....

>PRK08570 rpl19e 50S ribosomal protein L19e; Reviewed

Probab=100.00  E-value=4.4e-73  Score=458.96  Aligned_cols=147  Identities=42%  Similarity=0.736  Sum_probs=145.4

Q ss_pred             CCchhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCC
Q 029944            1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK   80 (185)
Q Consensus         1 M~~l~~QKRLAa~vL~cG~~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~SR~R~r~~~~~r~kGR~~G~Gk   80 (185)
                      |++|++|+||||+||+||+++||||||+++||++||||+|||+||+||+|+++|++||||||++++++++++|||+||||
T Consensus         1 M~~l~~qkRLAA~iL~~G~~rVw~DP~~~~eI~~A~tR~dIR~LI~~G~I~~kp~kg~Sr~R~r~~~~~r~kGr~~G~G~   80 (150)
T PRK08570          1 MMDLSAQKRLAADILGVGVSRVWIDPEALEDVAEAITREDIRELIKEGVIKAKPKKGISRGRARERHEKRKKGRRRGPGS   80 (150)
T ss_pred             CcchHHHHHHHHHHHCCCccceeeCHHHHHHHHHHhhHHHHHHHHHCCCeeecCccCCChHHHHHHHHHHHhCCCCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCcchHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHhhhcCCccccHHHHHHHHHHhhh
Q 029944           81 RKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKA  147 (185)
Q Consensus        81 RkGt~~AR~p~K~~Wm~riR~lRr~Lk~~re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~i~~~k~  147 (185)
                      |+||+|||+|+|+.||.+||+||++|++|||+|+||+|+||.||++||||+|+|++||++||+....
T Consensus        81 RkGt~~AR~p~K~~W~~riR~lRr~Lk~lR~~~kId~~~Yr~lY~kaKGn~Fkn~~~L~~~i~~~~~  147 (150)
T PRK08570         81 RKGKKGARTPKKERWINRIRALRRYLRELRDEGKIDRKTYRKLYRKAKGGEFRSVSHLKTYIEEHGL  147 (150)
T ss_pred             CCCcccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCccCCHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999999999999999999999998764

>cd00481 Ribosomal_L19e Ribosomal protein L19e

Probab=100.00  E-value=7.3e-73  Score=455.58  Aligned_cols=145  Identities=66%  Similarity=1.102  Sum_probs=142.9

Q ss_pred             hhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCCccc
Q 029944            4 LKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKG   83 (185)
Q Consensus         4 l~~QKRLAa~vL~cG~~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~SR~R~r~~~~~r~kGR~~G~GkRkG   83 (185)
                      |++||||||+||+||+++||||||+++||++||||+|||+||+||+|+++|++||||||++++++++++|||+|||||+|
T Consensus         1 l~~QkRLAA~vL~~G~~rVW~DP~~~~eI~~A~tR~dIR~LIkdG~I~~kp~kg~Sr~R~r~~~~~r~kGr~~G~G~RkG   80 (145)
T cd00481           1 LRLQKRLAADILKCGKNRVWIDPNELEEIANANTREDIRKLIKDGLIIKKPKKGHSRGRARKRHEARRKGRHRGPGSRKG   80 (145)
T ss_pred             CcHHHHHHHHHHCCCCCceeeCHHHHHHHHHhhhHHHHHHHHHCCCeeecCCCCCChHHHHHHHHHHHhCcCCCCCCccC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCcchHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHhhhcCCccccHHHHHHHHHHhhhH
Q 029944           84 TREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAE  148 (185)
Q Consensus        84 t~~AR~p~K~~Wm~riR~lRr~Lk~~re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~i~~~k~e  148 (185)
                      |++||+|+|+.||.+||+||++|++|||+|+||+|+||.||++||||+|+|++||++||++.++|
T Consensus        81 t~~AR~p~K~~W~~riR~lRr~Lk~~R~~~kIdk~~Yr~lY~kaKG~~Fknk~~L~~~i~~~~~~  145 (145)
T cd00481          81 TKGARMPSKELWIRRIRALRRLLKKLRDSGKIDKHTYRELYLKAKGNVFKNKRHLKEYIHKAKAE  145 (145)
T ss_pred             ccccCCcHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCCHHHHHHHHHHhccC
Confidence            99999999999999999999999999999999999999999999999999999999999998764

L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.

>cd01418 Ribosomal_L19e_A Ribosomal protein L19e, archaeal

Probab=100.00  E-value=2.9e-71  Score=446.18  Aligned_cols=142  Identities=40%  Similarity=0.723  Sum_probs=140.5

Q ss_pred             hhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCCccc
Q 029944            4 LKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKG   83 (185)
Q Consensus         4 l~~QKRLAa~vL~cG~~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~SR~R~r~~~~~r~kGR~~G~GkRkG   83 (185)
                      |++||||||+||+||+++||||||+++||++||||+|||+||+||+|+++|++||||||++++++++++|||+|||||+|
T Consensus         1 l~~QkRLAA~iL~~G~~rVw~DP~~~~eI~~A~tR~dIR~LI~~G~I~~kp~kg~Sr~R~r~~~~~r~kGr~~G~G~RkG   80 (145)
T cd01418           1 LSSQRRLAADILGVGINRVWIDPERLEEVAEAITRDDIRALIKEGVIKAKPKKGISRGRLKERHEKRKKGRRRGPGSRKG   80 (145)
T ss_pred             CcHHHHHHHHHHCCCCCeeeeChHHHHHHHHhhhHHHHHHHHHCCCeeecCCCCCCHHHHHHHHHHHHhCcCCCCCCCCC
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCcchHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHhhhcCCccccHHHHHHHHHHh
Q 029944           84 TREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKS  145 (185)
Q Consensus        84 t~~AR~p~K~~Wm~riR~lRr~Lk~~re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~i~~~  145 (185)
                      |+|||+|+|+.||.+||+||++|++|||+|+||+|+||.||++||||+|+|++||++||..+
T Consensus        81 t~~AR~p~K~~W~~riR~lRr~Lk~~R~~~kId~~~Yr~lY~kaKGn~Fkn~~~L~~~I~~~  142 (145)
T cd01418          81 KKGARTPKKERWIKTIRALRRYLKELRDKGKIDKKTYRKLYRKAKGGSFRSLSHLKSYLKQH  142 (145)
T ss_pred             ccccCCCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCCHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999876

L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.

>COG2147 RPL19A Ribosomal protein L19E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.4e-68  Score=431.16  Aligned_cols=149  Identities=50%  Similarity=0.809  Sum_probs=146.6

Q ss_pred             CCchhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCC
Q 029944            1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK   80 (185)
Q Consensus         1 M~~l~~QKRLAa~vL~cG~~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~SR~R~r~~~~~r~kGR~~G~Gk   80 (185)
                      |+||++|+||||+||+||++|||||||+++||++|+||+|||.||+||+|+++|++|+|+||+++++++++||||+||||
T Consensus         1 M~nl~~qkRLAA~il~vG~~Rvwidp~~~eei~~A~TR~dIr~LIk~g~I~~k~~kg~SrgR~rkr~~qkkkgr~rG~Gs   80 (150)
T COG2147           1 MSNLRTQKRLAADILGVGENRVWIDPNEIEEIASAITREDIRALIKDGVIKAKPKKGISRGRARKRHAQKKKGRRRGPGS   80 (150)
T ss_pred             CchHHHHHHHHHHHHccCcceeeeChHHHHHHHHhhhHHHHHHHHHCCCeeeccccccchHHHHHHHHHHhcccCCCCCc
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCcchHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHhhhcCCccccHHHHHHHHHHhhhHH
Q 029944           81 RKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEK  149 (185)
Q Consensus        81 RkGt~~AR~p~K~~Wm~riR~lRr~Lk~~re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~i~~~k~e~  149 (185)
                      |+||++||+|+|+.||.+||+||++|++|+|+|+||+|+||.||+++|||.|++++||.+||.+++.++
T Consensus        81 RKG~k~AR~p~K~~Wi~~IRalR~~Lr~lrd~gkIdk~~YR~lY~~aKGg~fk~~~~L~~~i~~~~~~k  149 (150)
T COG2147          81 RKGTKGARMPSKERWIKRIRALRRELRKLRDDGKIDKHTYRKLYRMAKGGAFKSKSHLKSYIEEAKLLK  149 (150)
T ss_pred             cccccccCCCHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHcCCccccHHHHHHHHHHhcccc
Confidence            999999999999999999999999999999999999999999999999999999999999999987653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	185
3izr_T	209	Localization Of The Large Subunit Ribosomal Protein		6e-77
2zkr_p	196	Structure Of A Mammalian Ribosomal 60s Subunit With		7e-56
4a1a_O	185	T.Thermophila 60s Ribosomal Subunit In Complex With		5e-53
3zf7_T	260	High-resolution Cryo-electron Microscopy Structure		8e-53
4a17_O	185	T.Thermophila 60s Ribosomal Subunit In Complex With		4e-48
2ww9_J	189	Cryo-Em Structure Of The Active Yeast Ssh1 Complex		1e-47
1s1i_P	142	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		4e-41
3jyw_P	176	Structure Of The 60s Proteins For Eukaryotic Riboso		4e-41
3j21_Q	150	Promiscuous Behavior Of Proteins In Archaeal Riboso		9e-25
3ow2_O	143	Crystal Structure Of Enhanced Macrolide Bound To 50		6e-15
1ffk_M	148	Crystal Structure Of The Large Ribosomal Subunit Fr		6e-15
1s72_P	149	Refined Crystal Structure Of The Haloarcula Marismo		7e-15
3g4s_P	143	Co-Crystal Structure Of Tiamulin Bound To The Large		4e-14

>pdb|3IZR|T Chain T, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 209

Iteration: 1
 Score =  282 bits (722), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 140/166 (84%), Positives = 149/166 (89%)
Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           MVSLKLQKRL++SVLKCG+GKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKP KIHSR
Sbjct: 1   MVSLKLQKRLASSVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPQKIHSR 60
Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMY 120
           SRARR  EAK+KGRHSGYGKR+GTREARLPTKI              KYRE+KKIDKHMY
Sbjct: 61  SRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120
Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166
           HDMY+KVKGN+FKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK+
Sbjct: 121 HDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKS 166

>pdb|2ZKR|PP Chain p, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 196

Iteration: 1
 Score =  213 bits (541), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 105/166 (63%), Positives = 128/166 (77%)
Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60
Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMY 120
           +R R+   A+RKGRH G GKRKGT  AR+P K+              +YRESKKID+HMY
Sbjct: 61  ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120
Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166
           H +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K 
Sbjct: 121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKT 166

>pdb|4A1A|O Chain O, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 3. Length = 185

Iteration: 1
 Score =  203 bits (516), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 102/166 (61%), Positives = 128/166 (77%)
Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           MVSL+LQKRL+ASVLKCG+ ++WLDPNE +EISMANSR +IRKL+KDG ++++ T IHSR
Sbjct: 1   MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSR 60
Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMY 120
           SRAR   EAKRKGRH+G GKRKGTR AR+PTK+              KYR +KKIDKH Y
Sbjct: 61  SRARAFLEAKRKGRHTGSGKRKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQY 120
Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166
           H+ Y+  KGN++KNK VL+E+IH SKA+K +   L+ Q EA+RAKN
Sbjct: 121 HEFYLGSKGNLYKNKTVLIEAIHVSKADKIKSDKLTSQQEARRAKN 166

>pdb|3ZF7|T Chain T, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 260

Iteration: 1
 Score =  202 bits (514), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 98/166 (59%), Positives = 124/166 (74%)
Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           MVSLKLQ RL+A +L+CGRG+VWLDPNE  EI  ANSR+++RKL+KDG ++RKP K+HSR
Sbjct: 1   MVSLKLQARLAADILRCGRGRVWLDPNEAVEIRNANSRKSVRKLIKDGLVMRKPVKVHSR 60
Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMY 120
           SR R+MK AK  GRH G G+R+GTREAR+P+K               KYRE KKID+H+Y
Sbjct: 61  SRWRQMKLAKSMGRHEGTGRREGTREARMPSKDLWMRRLRILRRLLRKYREEKKIDRHIY 120
Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166
            ++YMK KGNVF+NKR LME IHK K EK + + L++Q  AKR K+
Sbjct: 121 RELYMKAKGNVFRNKRNLMEHIHKVKNEKKKARQLAEQLAAKRLKD 166

>pdb|4A17|O Chain O, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2 Length = 185

Iteration: 1
 Score =  187 bits (474), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 93/147 (63%), Positives = 115/147 (78%)
Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           MVSL+LQKRL+ASVLKCG+ ++WLDPNE +EISMANSR +IRKL+KDG ++++ T IHSR
Sbjct: 1   MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSR 60
Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMY 120
           SRAR   EAKRKGRH+G GKRKGTR AR+PTK+              KYR +KKIDKH Y
Sbjct: 61  SRARAFLEAKRKGRHTGSGKRKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQY 120
Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKA 147
           H+ Y+  KGN++KNK VL+E+IH SKA
Sbjct: 121 HEFYLGSKGNLYKNKTVLIEAIHVSKA 147

>pdb|2WW9|J Chain J, Cryo-Em Structure Of The Active Yeast Ssh1 Complex Bound To The Yeast 80s Ribosome Length = 189

Iteration: 1
 Score =  186 bits (471), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 90/166 (54%), Positives = 122/166 (73%)
Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           M +L+ QKRL+ASV+  G+ KVWLDPNE +EI+ ANSR  IRKLVK+G I++K   +HS+
Sbjct: 1   MANLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSK 60
Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMY 120
           SR R   ++KR+GRHSGYGKRKGTREARLP+++              KYR++ KIDKH+Y
Sbjct: 61  SRTRAHAQSKREGRHSGYGKRKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLY 120
Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166
           H +Y + KGN FK+KR L+E I ++KA+  REK L+++ EA+R KN
Sbjct: 121 HVLYKESKGNAFKHKRALVEHIIQAKADAQREKALNEEAEARRLKN 166

>pdb|1S1I|P Chain P, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 142

Iteration: 1
 Score =  164 bits (414), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 78/140 (55%), Positives = 103/140 (73%)
Query: 3   SLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSR 62
           +L+ QKRL+ASV+  G+ KVWLDPNE +EI+ ANSR  IRKLVK+G I++K   +HS+SR
Sbjct: 2   NLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSR 61
Query: 63  ARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHD 122
            R   ++KR+GRHSGYGKRKGTREARLP+++              KYR++ KIDKH+YH 
Sbjct: 62  TRAHAQSKREGRHSGYGKRKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHV 121
Query: 123 MYMKVKGNVFKNKRVLMESI 142
           +Y + KGN FK+KR L+E I
Sbjct: 122 LYKESKGNAFKHKRALVEHI 141

>pdb|3JYW|P Chain P, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 176

Iteration: 1
 Score =  164 bits (414), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 78/140 (55%), Positives = 103/140 (73%)
Query: 3   SLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSR 62
           +L+ QKRL+ASV+  G+ KVWLDPNE +EI+ ANSR  IRKLVK+G I++K   +HS+SR
Sbjct: 2   NLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSR 61
Query: 63  ARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHD 122
            R   ++KR+GRHSGYGKRKGTREARLP+++              KYR++ KIDKH+YH 
Sbjct: 62  TRAHAQSKREGRHSGYGKRKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHV 121
Query: 123 MYMKVKGNVFKNKRVLMESI 142
           +Y + KGN FK+KR L+E I
Sbjct: 122 LYKESKGNAFKHKRALVEHI 141

>pdb|3J21|Q Chain Q, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 150

Iteration: 1
 Score =  109 bits (272), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 55/138 (39%), Positives = 86/138 (62%)
Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           M +LK+Q+R++A +LKCG  ++W+DP  +++++ A +R++I++L+K+G I +KP K  SR
Sbjct: 1   MNTLKMQRRIAAEILKCGENRIWIDPERIDDVASAITREDIKRLIKEGVIKKKPIKGQSR 60
Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMY 120
            RA+   E K+KGRH G G RKG + AR+  K               K +  KKID+  Y
Sbjct: 61  YRAKIRHEQKKKGRHRGPGSRKGKKTARMGKKELWIKTIRALRKELRKLKAQKKIDRKTY 120
Query: 121 HDMYMKVKGNVFKNKRVL 138
             +Y++ KG  FKNK  L
Sbjct: 121 RMLYIRAKGGQFKNKHQL 138

>pdb|3OW2|O Chain O, Crystal Structure Of Enhanced Macrolide Bound To 50s Ribosomal Subunit Length = 143

Iteration: 1
 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 65/131 (49%)
Query: 2   VSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRS 61
             L  QKRL+A VL  G+ +VW +P    +I+ A +R+++R+LV +G I  K  K +SR 
Sbjct: 1   TDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRG 60
Query: 62  RARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYH 121
           RAR  ++ + KG   G G RKG   AR  +K               + R+   +    Y 
Sbjct: 61  RARERQKKRAKGHQKGAGSRKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYR 120
Query: 122 DMYMKVKGNVF 132
           D+Y K  G  F
Sbjct: 121 DLYDKAGGGEF 131

>pdb|1FFK|M Chain M, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 148

Iteration: 1
 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 65/131 (49%)
Query: 2   VSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRS 61
             L  QKRL+A VL  G+ +VW +P    +I+ A +R+++R+LV +G I  K  K +SR 
Sbjct: 1   TDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRG 60
Query: 62  RARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYH 121
           RAR  ++ + KG   G G RKG   AR  +K               + R+   +    Y 
Sbjct: 61  RARERQKKRAKGHQKGAGSRKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYR 120
Query: 122 DMYMKVKGNVF 132
           D+Y K  G  F
Sbjct: 121 DLYDKAGGGEF 131

>pdb|1S72|P Chain P, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 149

Iteration: 1
 Score = 76.6 bits (187), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 65/132 (49%)
Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           M  L  QKRL+A VL  G+ +VW +P    +I+ A +R+++R+LV +G I  K  K +SR
Sbjct: 1   MTDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSR 60
Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMY 120
            RAR  ++ +  G   G G RKG   AR  +K               + R+   +    Y
Sbjct: 61  GRARERQKKRAYGHQKGAGSRKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQY 120
Query: 121 HDMYMKVKGNVF 132
            D+Y K  G  F
Sbjct: 121 RDLYDKAGGGEF 132

>pdb|3G4S|P Chain P, Co-Crystal Structure Of Tiamulin Bound To The Large Ribosomal Subunit Length = 143

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 64/131 (48%)
Query: 2   VSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRS 61
             L  QKRL+A VL  G+ +VW +P    +I+ A +R+++R+LV +G I  K  K +SR 
Sbjct: 1   TDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRG 60
Query: 62  RARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYH 121
           RAR  ++ +  G   G G RKG   AR  +K               + R+   +    Y 
Sbjct: 61  RARERQKKRAYGHQKGAGSRKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYR 120
Query: 122 DMYMKVKGNVF 132
           D+Y K  G  F
Sbjct: 121 DLYDKAGGGEF 131
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	185
4a17_O	185	RPL19, 60S ribosomal protein L5; eukaryotic riboso	1e-58
3iz5_T	209	60S ribosomal protein L19 (L19E); eukaryotic ribos	2e-54
3jyw_P	176	60S ribosomal protein L19; eukaryotic ribosome, RA	1e-52
4a1a_O	185	RPL19, 60S ribosomal protein L5; eukaryotic riboso	6e-52
1vq8_P	149	50S ribosomal protein L19E; ribosome 50S, protein-	4e-51
3u5e_R	189	60S ribosomal protein L19-A; translation, ribosome	2e-49
2zkr_p	196	60S ribosomal protein L19; protein-RNA complex, 60	3e-48
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>4a17_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} Length = 185

 Score =  180 bits (458), Expect = 1e-58
 Identities = 106/147 (72%), Positives = 128/147 (87%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           MVSL+LQKRL+ASVLKCG+ ++WLDPNE +EISMANSR +IRKL+KDG ++++ T IHSR
Sbjct: 1   MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRAR   EAKRKGRH+G GKRKGTR AR+PTK+LWMRR RVLRRLLRKYR +KKIDKH Y
Sbjct: 61  SRARAFLEAKRKGRHTGSGKRKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKA 147
           H+ Y+  KGN++KNK VL+E+IH SKA
Sbjct: 121 HEFYLGSKGNLYKNKTVLIEAIHVSKA 147

>3jyw_P 60S ribosomal protein L19; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} Length = 176

 Score =  165 bits (419), Expect = 1e-52
 Identities = 94/174 (54%), Positives = 125/174 (71%)

Query: 3   SLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSR 62
           +L+ QKRL+ASV+  G+ KVWLDPNE +EI+ ANSR  IRKLVK+G I++K   +HS+SR
Sbjct: 2   NLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSR 61

Query: 63  ARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHD 122
            R   ++KR+GRHSGYGKRKGTREARLP++++W+RR+RVLRRLL KYR++ KIDKH+YH 
Sbjct: 62  TRAHAQSKREGRHSGYGKRKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHV 121

Query: 123 MYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKLAR 176
           +Y + KGN FK+KR L+E I  + A  A     +    A  A   A+     A 
Sbjct: 122 LYKESKGNAFKHKRALVEHIAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 175

>4a1a_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1c_O 4a1e_O Length = 185

 Score =  164 bits (415), Expect = 6e-52
 Identities = 118/180 (65%), Positives = 148/180 (82%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           MVSL+LQKRL+ASVLKCG+ ++WLDPNE +EISMANSR +IRKL+KDG ++++ T IHSR
Sbjct: 1   MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SRAR   EAKRKGRH+G GKRKGTR AR+PTK+LWMRR RVLRRLLRKYR +KKIDKH Y
Sbjct: 61  SRARAFLEAKRKGRHTGSGKRKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKLARREER 180
           H+ Y+  KGN++KNK VL+E+IH SKA+K +   L+ Q EA+RAKN ASR ++  + +  
Sbjct: 121 HEFYLGSKGNLYKNKTVLIEAIHVSKADKIKSDKLTSQQEARRAKNTASRAKRNEKAQIV 180

>1vq8_P 50S ribosomal protein L19E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.94.1.1 PDB: 1vq4_P* 1vq5_P* 1vq6_P* 1vq7_P* 1s72_P* 1vq9_P* 1vqk_P* 1vql_P* 1vqm_P* 1vqn_P* 1vqo_P* 1vqp_P* 1yhq_P* 1yi2_P* 1yij_P* 1yit_P* 1yj9_P* 1yjn_P* 1yjw_P* 2otj_P* ... Length = 149

 Score =  160 bits (406), Expect = 4e-51
 Identities = 52/148 (35%), Positives = 77/148 (52%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           M  L  QKRL+A VL  G+ +VW +P    +I+ A +R+++R+LV +G I  K  K +SR
Sbjct: 1   MTDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
            RAR  ++ +  G   G G RKG   AR  +K  W  R+R  R  LR+ R+   +    Y
Sbjct: 61  GRARERQKKRAYGHQKGAGSRKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAE 148
            D+Y K  G  F +   L   I  +  +
Sbjct: 121 RDLYDKAGGGEFDSVADLERYIDANHGD 148

>3u5e_R 60S ribosomal protein L19-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_J 2ww9_J 3izc_T 3izs_T 2wwb_J 3o5h_S 3o58_S 3u5i_R 1s1i_P Length = 189

 Score =  157 bits (399), Expect = 2e-49
 Identities = 105/184 (57%), Positives = 146/184 (79%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           M +L+ QKRL+ASV+  G+ KVWLDPNE +EI+ ANSR  IRKLVK+G I++K   +HS+
Sbjct: 1   MANLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSK 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           SR R   ++KR+GRHSGYGKRKGTREARLP++++W+RR+RVLRRLL KYR++ KIDKH+Y
Sbjct: 61  SRTRAHAQSKREGRHSGYGKRKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKLARREER 180
           H +Y + KGN FK+KR L+E I ++KA+  REK L+++ EA+R KN+A+R+R+  R  E+
Sbjct: 121 HVLYKESKGNAFKHKRALVEHIIQAKADAQREKALNEEAEARRLKNRAARDRRAQRVAEK 180

Query: 181 LAQV 184
              +
Sbjct: 181 RDAL 184

>2zkr_p 60S ribosomal protein L19; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 196

 Score =  154 bits (390), Expect = 3e-48
 Identities = 121/184 (65%), Positives = 152/184 (82%)

Query: 1   MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
           M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60

Query: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120
           +R R+   A+RKGRH G GKRKGT  AR+P K+ WMRRMR+LRRLLR+YRESKKID+HMY
Sbjct: 61  ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120

Query: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKLARREER 180
           H +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K K +R+R+  R + +
Sbjct: 121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAK 180

Query: 181 LAQV 184
             ++
Sbjct: 181 KEEI 184

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 2e-05
 Identities = 31/196 (15%), Positives = 56/196 (28%), Gaps = 68/196 (34%)

Query: 10  LSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTK----IHSRSRARR 65
           +   +L      +W D  + + + + N      KL K   + ++P +    I S     +
Sbjct: 387 IPTILL----SLIWFDVIKSDVMVVVN------KLHKYSLVEKQPKESTISIPSIYLELK 436

Query: 66  MKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKH------- 118
           +K       H                           R ++  Y   K  D         
Sbjct: 437 VKLENEYALH---------------------------RSIVDHYNIPKTFDSDDLIPPYL 469

Query: 119 --------MYH----DMYMKVKG--NVFKNKRVLMESI-HKSKAEKAREKTLSD--QFEA 161
                    +H    +   ++     VF + R L + I H S A  A    L+   Q + 
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF 529

Query: 162 KR---AKNKASRERKL 174
            +     N    ER +
Sbjct: 530 YKPYICDNDPKYERLV 545

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	185
3u5e_R	189	60S ribosomal protein L19-A; translation, ribosome	100.0
4a1a_O	185	RPL19, 60S ribosomal protein L5; eukaryotic riboso	100.0
3iz5_T	209	60S ribosomal protein L19 (L19E); eukaryotic ribos	100.0
2zkr_p	196	60S ribosomal protein L19; protein-RNA complex, 60	100.0
4a17_O	185	RPL19, 60S ribosomal protein L5; eukaryotic riboso	100.0
1vq8_P	149	50S ribosomal protein L19E; ribosome 50S, protein-	100.0
3j21_Q	150	PFEL19, 50S ribosomal protein L19E; archaea, archa	100.0
3jyw_P	176	60S ribosomal protein L19; eukaryotic ribosome, RA	100.0

>3u5e_R 60S ribosomal protein L19-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_J 2ww9_J 3izc_T 3izs_T 2wwb_J 3o5h_S 3o58_S 3u5i_R 4b6a_R 1s1i_P

Probab=100.00  E-value=3.2e-87  Score=556.44  Aligned_cols=183  Identities=57%  Similarity=0.951  Sum_probs=180.2

Q ss_pred             CCchhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCC
Q 029944            1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK   80 (185)
Q Consensus         1 M~~l~~QKRLAa~vL~cG~~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~SR~R~r~~~~~r~kGR~~G~Gk   80 (185)
                      |++|++||||||+||+||+++|||||||++||++||||+|||+||+||+|+++|++|||||||+++++++++|||+|+|+
T Consensus         1 M~~L~~QKRLAA~VL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdG~Ii~Kp~~~~Sr~R~r~~~~ar~kGRh~G~Gk   80 (189)
T 3u5e_R            1 MANLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSRTRAHAQSKREGRHSGYGK   80 (189)
T ss_dssp             -CCCHHHHHHHHHHHTSCGGGCEECTTCHHHHHTCCSHHHHHHHHTTTSEECCCCCCCCTHHHHHHHHHHHTTCSCSGGG
T ss_pred             CcchHHHHHHHHHHHCCCCCeeecCHHHHHHHHhhhhHHHHHHHHHCCCeEecCccCCChhHHHHHHHHHHhCCCCCCCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCcchHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHhhhcCCccccHHHHHHHHHHhhhHHHHhhhhhHHHH
Q 029944           81 RKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE  160 (185)
Q Consensus        81 RkGt~~AR~p~K~~Wm~riR~lRr~Lk~~re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~i~~~k~e~~r~k~l~dQae  160 (185)
                      |+||+|||||+|++||++||+||++|++|||+|+||+|+||.||++||||+|+|++||++|||++++|++++++|+||||
T Consensus        81 RKGt~~AR~p~K~~WmrriR~lRrlLr~~Re~~kID~h~Y~~LY~kaKGn~Fknk~~L~e~I~k~kae~~r~k~l~dqae  160 (189)
T 3u5e_R           81 RKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIIQAKADAQREKALNEEAE  160 (189)
T ss_dssp             CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHSSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhchHHHHHHHHHHHHHHHhh
Q 029944          161 AKRAKNKASRERKLARREERLAQ  183 (185)
Q Consensus       161 A~r~k~k~~r~rr~~~~~~kk~~  183 (185)
                      |+++|++++++++++++|+++++
T Consensus       161 a~r~k~k~~~~r~~~~~~~k~~~  183 (189)
T 3u5e_R          161 ARRLKNRAARDRRAQRVAEKRDA  183 (189)
T ss_dssp             HHHHHHHHHHHHHHHTTTSSTTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988764

>4a1a_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1c_O 4a1e_O

Probab=100.00  E-value=3.9e-86  Score=548.27  Aligned_cols=179  Identities=66%  Similarity=1.043  Sum_probs=145.8

Q ss_pred             CCchhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCC
Q 029944            1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK   80 (185)
Q Consensus         1 M~~l~~QKRLAa~vL~cG~~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~SR~R~r~~~~~r~kGR~~G~Gk   80 (185)
                      |++|++||||||+||+||+++|||||||++||++||||+|||+||+||+|+++|++|||||||+++++++++|||+|+|+
T Consensus         1 M~~L~~QKRLAA~VL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdG~Ii~Kp~~~~Sr~R~r~~~~ar~kGRh~G~Gk   80 (185)
T 4a1a_O            1 MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSRSRARAFLEAKRKGRHTGSGK   80 (185)
T ss_dssp             -CCCHHHHHHHHHHHTSCGGGEEECSSSHHHHHHCCSHHHHHHHHHHTSEEECCCCCCCCHHHHHHHHHHHHTSSCCSTT
T ss_pred             CcchHHHHHHHHHHhCCCCcccccChHHHHHHHhcccHHHHHHHHHCCCeeecCCCCCChHHHHHHHHHHHhCCCCCCCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCcchHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHhhhcCCccccHHHHHHHHHHhhhHHHHhhhhhHHHH
Q 029944           81 RKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE  160 (185)
Q Consensus        81 RkGt~~AR~p~K~~Wm~riR~lRr~Lk~~re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~i~~~k~e~~r~k~l~dQae  160 (185)
                      |+||+|||||+|++||++||+||++|++|||+|+||+|+||.||++||||+|+|+++|++|||+.++|++++++|+||||
T Consensus        81 RKGt~~AR~p~K~~WmrriR~lRrlLr~~Re~~kID~h~Y~~LY~kaKGn~Fknk~~L~e~I~k~kae~~r~k~l~dqae  160 (185)
T 4a1a_O           81 RKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQYHEFYLGSKGNLYKNKTVLIEAIHVSKADKIKSDKLTSQQE  160 (185)
T ss_dssp             CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHTC-------------
T ss_pred             cccchhccCChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhchHHHHHHHHHHHHH
Q 029944          161 AKRAKNKASRERKLARREE  179 (185)
Q Consensus       161 A~r~k~k~~r~rr~~~~~~  179 (185)
                      |+++|++++++++++++|-
T Consensus       161 a~r~k~k~~r~~~~~~~~~  179 (185)
T 4a1a_O          161 ARRAKNTASRAKRNEKAQI  179 (185)
T ss_dssp             -------------------
T ss_pred             HHHHHHHHHHHhHHHHHHH
Confidence            9999999999999999873

>2zkr_p 60S ribosomal protein L19; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=100.00  E-value=4.2e-84  Score=539.97  Aligned_cols=183  Identities=66%  Similarity=1.067  Sum_probs=148.4

Q ss_pred             CCchhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCC
Q 029944            1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK   80 (185)
Q Consensus         1 M~~l~~QKRLAa~vL~cG~~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~SR~R~r~~~~~r~kGR~~G~Gk   80 (185)
                      |++|++|+||||+||+||+++||||||+++||++||||+|||+||+||+|+++|++|||||||+++++++++|||+||||
T Consensus         1 M~~L~~QKRLAA~VL~cG~~rVWlDP~~~~eI~~A~sR~~IR~LIkdG~I~~Kp~~~~SR~R~r~~~~ar~kGRh~G~Gk   80 (196)
T 2zkr_p            1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGK   80 (196)
T ss_dssp             --------CHHHHHHTSCGGGEEECSTTHHHHHHCCSHHHHHHHHHHTSEEECCCCC-CCHHHHHHHHHHHHTCCCC---
T ss_pred             CcchHHHHHHHHHHHCCCcCceecChHHHHHHHHhhhHHHHHHHHHCCCeEecCcccccHHHHHHHHHHHHhCCCCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCcchHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHhhhcCCccccHHHHHHHHHHhhhHHHHhhhhhHHHH
Q 029944           81 RKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE  160 (185)
Q Consensus        81 RkGt~~AR~p~K~~Wm~riR~lRr~Lk~~re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~i~~~k~e~~r~k~l~dQae  160 (185)
                      |+||+|||||+|+.||++||+||++|++|||+|+||+|+||.||++||||+|+|++||++|||+.++|++++++|+||||
T Consensus        81 RKGt~~AR~p~K~~Wm~riR~lRrlLr~~Re~~kID~~~Yr~LY~kaKGn~Fknk~~L~e~I~~~Kae~~r~k~l~~q~e  160 (196)
T 2zkr_p           81 RKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAE  160 (196)
T ss_dssp             ---CHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTC-----------------CHHHHHHHHHHHH
T ss_pred             CcCcccccCcHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhchHHHHHHHHHHHHHHHhh
Q 029944          161 AKRAKNKASRERKLARREERLAQ  183 (185)
Q Consensus       161 A~r~k~k~~r~rr~~~~~~kk~~  183 (185)
                      |++++++++++++++++++++++
T Consensus       161 a~r~k~k~~r~~r~~~~~~~~~~  183 (196)
T 2zkr_p          161 ARRSKTKEARKRREERLQAKKEE  183 (196)
T ss_dssp             HHHTTTHHHHHHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998877643

>4a17_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila}

Probab=100.00  E-value=2.5e-81  Score=519.30  Aligned_cols=165  Identities=64%  Similarity=1.017  Sum_probs=162.0

Q ss_pred             CCchhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCC
Q 029944            1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK   80 (185)
Q Consensus         1 M~~l~~QKRLAa~vL~cG~~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~SR~R~r~~~~~r~kGR~~G~Gk   80 (185)
                      |++|++||||||+||+||++||||||||++||++||||+|||+||+||+|+++|++|||||||+++++++++|||+|+||
T Consensus         1 M~~L~~QKRLAAsVL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdGlIi~Kpv~~~SR~R~r~~~~ar~kGRh~G~Gk   80 (185)
T 4a17_O            1 MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSRSRARAFLEAKRKGRHTGSGK   80 (185)
T ss_dssp             -CCCHHHHHHHHHHHTSCGGGEEECSTTHHHHHHCCSHHHHHHHHHHTSEEECCCCCCCCHHHHHHHHHHHHTSSCCSTT
T ss_pred             CcchHHHHHHHHHHhCCCCCeeecChHHHHHHHhcccHHHHHHHHHCCCEEeCCcccCChHHHHHHHHHHHhCCCCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCcchHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHhhhcCCccccHHHHHHHHHHhhhHHHHhhhhhHHHH
Q 029944           81 RKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE  160 (185)
Q Consensus        81 RkGt~~AR~p~K~~Wm~riR~lRr~Lk~~re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~i~~~k~e~~r~k~l~dQae  160 (185)
                      |+||+|||||+|++||++||+||++|++|||+|+||+|+||.||++||||+|+|+++|++|||++++|++++++|+||||
T Consensus        81 RKGt~~AR~p~K~~WmrRiR~LRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~Kae~~r~k~l~dqae  160 (185)
T 4a17_O           81 RKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQYHEFYLGSKGNLYKNKTVLIEAIHVSKAXXXXXXXXXXXXX  160 (185)
T ss_dssp             CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHhhhccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhc
Q 029944          161 AKRAK  165 (185)
Q Consensus       161 A~r~k  165 (185)
                      |.-.-
T Consensus       161 a~~~~  165 (185)
T 4a17_O          161 XXXXX  165 (185)
T ss_dssp             HHHHH
T ss_pred             ccccc
Confidence            97543

>1vq8_P 50S ribosomal protein L19E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.94.1.1 PDB: 1vq4_P* 1vq5_P* 1vq6_P* 1vq7_P* 1s72_P* 1vq9_P* 1vqk_P* 1vql_P* 1vqm_P* 1vqn_P* 1vqo_P* 1vqp_P* 1yhq_P* 1yi2_P* 1yij_P* 1yit_P* 1yj9_P* 1yjn_P* 1yjw_P* 2otj_P* ...

Probab=100.00  E-value=1.5e-76  Score=477.73  Aligned_cols=149  Identities=35%  Similarity=0.577  Sum_probs=142.8

Q ss_pred             CCchhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCC
Q 029944            1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK   80 (185)
Q Consensus         1 M~~l~~QKRLAa~vL~cG~~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~SR~R~r~~~~~r~kGR~~G~Gk   80 (185)
                      |++|++||||||+||+||+++||||||+++||++||||+|||+||+||+|+++|++|||||||+++++++++|||+||||
T Consensus         1 M~~l~~QKRLAA~vL~cG~~rVw~DP~~~~eI~~A~sR~~IR~LIkdG~I~~kp~~~~Sr~R~r~~~~~r~kGR~~G~Gk   80 (149)
T 1vq8_P            1 MTDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRGRARERQKKRAYGHQKGAGS   80 (149)
T ss_dssp             -CCCHHHHHHHHHHTTSCGGGEEECGGGHHHHHHCCSHHHHHHHHHTTSEEECCCCCCCCHHHHHHHHHHHTTCSCSGGG
T ss_pred             CcchHHHHHHHHHHHCCCcCceecCHHHHHHHHhcccHHHHHHHHHCCCeEeccccCccHHHHHHHHHHHHhCCCCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCcchHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHhhhcCCccccHHHHHHHHHHhhhHH
Q 029944           81 RKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEK  149 (185)
Q Consensus        81 RkGt~~AR~p~K~~Wm~riR~lRr~Lk~~re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~i~~~k~e~  149 (185)
                      |+||+|||+|+|+.||++||+||++|++|||+|+||+|+||.||++||||+|+|+++|++|||+.++|+
T Consensus        81 RkGt~~AR~p~K~~Wm~riR~lRrlLr~~Re~~kID~~~Yr~lY~kaKGn~Fknk~~L~~~I~~~~~~~  149 (149)
T 1vq8_P           81 RKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYRDLYDKAGGGEFDSVADLERYIDANHGDA  149 (149)
T ss_dssp             CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTTCCSSHHHHHHHHTC-----
T ss_pred             CcCcccccCcHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCCHHHHHHHHHHhccCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999874

>3j21_Q PFEL19, 50S ribosomal protein L19E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=3.4e-76  Score=476.03  Aligned_cols=147  Identities=42%  Similarity=0.806  Sum_probs=145.3

Q ss_pred             CCchhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCC
Q 029944            1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK   80 (185)
Q Consensus         1 M~~l~~QKRLAa~vL~cG~~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~SR~R~r~~~~~r~kGR~~G~Gk   80 (185)
                      |++|++||||||+||+||+++|||||||++||++||||||||+||+||+|+++|++|||||||+++++++++|||+|+|+
T Consensus         1 m~~l~~QKRLAa~vL~cGk~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~Sr~R~r~~~~~r~kGR~~G~Gk   80 (150)
T 3j21_Q            1 MNTLKMQRRIAAEILKCGENRIWIDPERIDDVASAITREDIKRLIKEGVIKKKPIKGQSRYRAKIRHEQKKKGRHRGPGS   80 (150)
T ss_dssp             CCCCHHHHHHHHHHHTSCGGGEEECTTCHHHHHTCCSHHHHHHHHHTTSEEECCCCCCCCHHHHHHHHHHHTTCSCSTTT
T ss_pred             CcchHHHHHHHHHHHcCCcceeecChHHHHHHHhcccHHHHHHHHHCCCeEecCCcCcCHHHHHHHHHHHHhcccCCCCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCcchHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHhhhcCCccccHHHHHHHHHHhhh
Q 029944           81 RKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKA  147 (185)
Q Consensus        81 RkGt~~AR~p~K~~Wm~riR~lRr~Lk~~re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~i~~~k~  147 (185)
                      |+||+|||+|+|++||++||+||++|++|||+|+||+|+||+||++||||+|+|+++|++||++...
T Consensus        81 RkGt~~AR~p~K~~Wm~riR~lRrlLr~~re~~kID~~~Y~~LY~kaKGn~Fknk~~L~e~i~~~~~  147 (150)
T 3j21_Q           81 RKGKKTARMGKKELWIKTIRALRKELRKLKAQKKIDRKTYRMLYIRAKGGQFKNKHQLYLFLEEHGL  147 (150)
T ss_dssp             CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCSCHHHHHHHHHHHST
T ss_pred             ccCcccccCChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCcHHHHHHHHHHhCc
Confidence            9999999999999999999999999999999999999999999999999999999999999998754

>3jyw_P 60S ribosomal protein L19; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}

Probab=100.00  E-value=6.4e-72  Score=460.93  Aligned_cols=157  Identities=57%  Similarity=0.953  Sum_probs=153.0

Q ss_pred             CchhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCCc
Q 029944            2 VSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKR   81 (185)
Q Consensus         2 ~~l~~QKRLAa~vL~cG~~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~SR~R~r~~~~~r~kGR~~G~GkR   81 (185)
                      ++|++||||||+||+||++||||||||++||++||||||||+||+||+|+++|++||||+||+++++++++|||+|+|+|
T Consensus         1 ~~l~~QKRLAa~vL~cG~~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~Sr~R~r~~~~~r~kGr~~G~GkR   80 (176)
T 3jyw_P            1 ANLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSRTRAHAQSKREGRHSGYGKR   80 (176)
T ss_dssp             CCCHHHHHHHHHHHTCCTTTEECCSSCCHHHHHCCSHHHHHHHHHHTCSEECCCCCCCSHHHHHHHHHHTTTSSCSSSSC
T ss_pred             CCcHHHHHHHHHHhCCCCCccccChHHHHHHHhhccHHHHHHHHHCCCEEeCCCcCCChHHHHHHHHHHhcCCCCCCCCC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCcchHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHhhhcCCccccHHHHHHHHHHhhhHHHHhhhhhHH
Q 029944           82 KGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQ  158 (185)
Q Consensus        82 kGt~~AR~p~K~~Wm~riR~lRr~Lk~~re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~i~~~k~e~~r~k~l~dQ  158 (185)
                      +||+|||||+|++||++||+||++|++|||+|+||+|+||.||+++|||+|+|+++|++||++.++|+++....+.-
T Consensus        81 kGt~~AR~p~K~~Wm~riR~lRrlLr~yRe~gkIDk~lYr~LY~kaKGn~Fknk~~L~e~I~k~ka~~~~~~~~~~~  157 (176)
T 3jyw_P           81 KGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIAAAAAAAAAAAAAAAA  157 (176)
T ss_dssp             SSCTTCSSCHHHHHHHHHHHHHHHHSTTTTTTSSCSTTTTTTGGGTTTTCCCSTTHHHHCTTTTGGGGHHHHHHGGG
T ss_pred             cccccccCChHHHHHHHHHHHHHHHHHHhhCCCCCchhhHHHHHHhcCCEechHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	185
d1vqop1	143	a.94.1.1 (P:1-143) Ribosomal protein L19 (L19e) {A	2e-57

>d1vqop1 a.94.1.1 (P:1-143) Ribosomal protein L19 (L19e) {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 143

class: All alpha proteins
fold: Ribosomal protein L19 (L19e)
superfamily: Ribosomal protein L19 (L19e)
family: Ribosomal protein L19 (L19e)
domain: Ribosomal protein L19 (L19e)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  174 bits (444), Expect = 2e-57
 Identities = 51/141 (36%), Positives = 74/141 (52%)

Query: 3   SLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSR 62
            L  QKRL+A VL  G+ +VW +P    +I+ A +R+++R+LV +G I  K  K +SR R
Sbjct: 2   DLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRGR 61

Query: 63  ARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHD 122
           AR  ++ +  G   G G RKG   AR  +K  W  R+R  R  LR+ R+   +    Y D
Sbjct: 62  ARERQKKRAYGHQKGAGSRKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYRD 121

Query: 123 MYMKVKGNVFKNKRVLMESIH 143
           +Y K  G  F +   L   I 
Sbjct: 122 LYDKAGGGEFDSVADLERYID 142

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	185
d1vqop1	143	Ribosomal protein L19 (L19e) {Archaeon Haloarcula	100.0

>d1vqop1 a.94.1.1 (P:1-143) Ribosomal protein L19 (L19e) {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: All alpha proteins
fold: Ribosomal protein L19 (L19e)
superfamily: Ribosomal protein L19 (L19e)
family: Ribosomal protein L19 (L19e)
domain: Ribosomal protein L19 (L19e)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=1.1e-72  Score=450.83  Aligned_cols=142  Identities=36%  Similarity=0.586  Sum_probs=140.9

Q ss_pred             CchhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCCc
Q 029944            2 VSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKR   81 (185)
Q Consensus         2 ~~l~~QKRLAa~vL~cG~~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~SR~R~r~~~~~r~kGR~~G~GkR   81 (185)
                      +||++||||||+||+||++|||||||+++||++||||+|||+||+||+|+++|++||||+|++++++++++|||+|+|+|
T Consensus         1 snL~~QKRLAa~vL~~G~~rVw~DP~~~~eI~~A~tr~dIR~LI~dG~I~~kp~kg~Sr~R~r~~~~~k~kGr~~G~GkR   80 (143)
T d1vqop1           1 TDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRGRARERQKKRAYGHQKGAGSR   80 (143)
T ss_dssp             CCCHHHHHHHHHHTTSCGGGEEECGGGHHHHHTCCSHHHHHHHHHTTSEEECCCCCCCCHHHHHHHHHHHTTCSCSGGGC
T ss_pred             CchHHHHHHHHHHHCCCCCeeeeChHHHHHHHHhhhHHHHHHHHHCCCEEeCCCCCCcHHHHHHHHHHHHhCCCCCcCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCcchHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHhhhcCCccccHHHHHHHHH
Q 029944           82 KGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIH  143 (185)
Q Consensus        82 kGt~~AR~p~K~~Wm~riR~lRr~Lk~~re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~i~  143 (185)
                      +||+|||+|+|+.||++||+||++|++|+|+|+||+|+||+||++||||+|+|++||++||+
T Consensus        81 KGt~~AR~p~K~~Wm~riR~lRr~Lk~lr~~~~Id~~~Yr~LY~kaKGn~Fknk~~L~~~I~  142 (143)
T d1vqop1          81 KGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYRDLYDKAGGGEFDSVADLERYID  142 (143)
T ss_dssp             CSCHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTCCSSHHHHHHHHT
T ss_pred             cCcccccCCchhhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCcccCHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999996