Citrus Sinensis ID: 029963

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180----
Protein Sequence
MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVKKLQLKRLLLLMLFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKAESAAIKKD
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcHHHHHHcccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccEccHHHEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHccHHHccc
Coil and Loop (DISEMBL)
MSNIVKEAWRKYLIQLQVhplrtkaiTAGVLAGCSDAIAQKISGVKKLQLKRLLLLMLFdfgygvpfghFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVvegkpwgsVMKKVrkdypavqftswkvwptVTWVNFQYAPQQFRELFFSLVASCWAIFINLKAESAAIKKD
Flexible Loop (DISEMBL)
MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVKKLQLKRLLLLMLFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLkaesaaikkd
Low Complexity Region (SEG)
MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVkklqlkrllllmlFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKAESAAIKKD
Disordered region (IsUnstruct)
***IVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVKKLQLKRLLLLMLFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKA********
Disordered Region (DISOPRED)
*****KEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVKKLQLKRLLLLMLFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFIN***********
Disordered Region (DISEMBL)
MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVKKLQLKRLLLLMLFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKAESAAIKKD
Disordered Region (DISPRO)
MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVKKLQLKRLLLLMLFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKAESA*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVKKLQLKRLLLLMLFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKAESAAIKKD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	184	2.2.26 [Sep-21-2011]
Q9ZS51	190	Peroxisomal membrane prot	no	no	0.956	0.926	0.508	2e-49
Q54FR4	185	PXMP2/4 family protein 4	yes	no	0.907	0.902	0.319	3e-18
Q54GD8	184	PXMP2/4 family protein 3	no	no	0.885	0.885	0.311	6e-18
Q54XX9	193	PXMP2/4 family protein 2	no	no	0.913	0.870	0.278	5e-15
P19258	176	Protein Mpv17 OS=Mus musc	yes	no	0.913	0.954	0.296	5e-15
Q5BK62	176	Protein Mpv17 OS=Rattus n	yes	no	0.913	0.954	0.296	6e-15
Q07066	194	Peroxisomal membrane prot	no	no	0.918	0.871	0.284	1e-14
Q66GV0	177	Protein Mpv17 OS=Xenopus	N/A	no	0.923	0.960	0.287	4e-14
P39210	176	Protein Mpv17 OS=Homo sap	yes	no	0.913	0.954	0.296	5e-14
Q2KIY1	196	Peroxisomal membrane prot	yes	no	0.907	0.852	0.289	7e-14

>sp|Q9ZS51|PMP22_ARATH Peroxisomal membrane protein PMP22 OS=Arabidopsis thaliana GN=PMP22 PE=1 SV=1

 Score =  195 bits (495), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 90/177 (50%), Positives = 127/177 (71%), Gaps = 1/177 (0%)

Query: 6   KEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVKKLQLKRLLLLMLFDFGYGV 65
           K   ++YL QLQ HPLRTKAITAGVL+G SD ++QK+SG++K+QL+R+LL ++F  G+  
Sbjct: 8   KTTLQRYLSQLQQHPLRTKAITAGVLSGVSDVVSQKLSGIQKIQLRRVLLKVIFAGGFLG 67

Query: 66  PFGHFLNKFLDAIFKGR-DNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMK 124
           P GHF + +LD  FKG+ D ++VAKKV+LEQL  SP  + LFM Y+G+V+E  PW  V +
Sbjct: 68  PAGHFFHTYLDKFFKGKKDTQTVAKKVILEQLTLSPLNHLLFMIYYGVVIERTPWTLVRE 127

Query: 125 KVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKAESAAI 181
           +++K YP VQ T+W  +P V W+N++Y P  FR +  SLVA  W IF+ L+A S  +
Sbjct: 128 RIKKTYPTVQLTAWTFFPVVGWINYKYVPLHFRVILHSLVAFFWGIFLTLRARSMTL 184

May be involved in the metabolism of reactive oxygen species.
Arabidopsis thaliana (taxid: 3702)

>sp|Q54FR4|PX24D_DICDI PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1

 Score = 91.7 bits (226), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 89/172 (51%), Gaps = 5/172 (2%)

Query: 5   VKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKI----SGVKKLQLKRLLLLMLFD 60
           +K A   YL QL  +P+ TKA+T+G L   SD++ Q I       KK   KR + + +F 
Sbjct: 8   LKLAQSHYLSQLHKYPVATKAVTSGFLYLISDSLVQGIELSRDKDKKYDFKRSMRMAVFG 67

Query: 61  FGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWG 120
           F    P  H+  K+LD  F  +  +    K+ ++Q++ SP  NFLF +  G ++EGK   
Sbjct: 68  FAVTGPLFHYWFKYLDKHFPKKSYRHAFIKLTIDQVVCSPVFNFLFFSGMG-ILEGKSKD 126

Query: 121 SVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFI 172
            +++K++KD+     +   VWP + +VNF Y     R  F ++    W  F+
Sbjct: 127 DIVEKLKKDWLTTYVSDCVVWPFINFVNFAYISSIHRVTFMNVCNIGWGAFL 178

Dictyostelium discoideum (taxid: 44689)

>sp|Q54GD8|PX24C_DICDI PXMP2/4 family protein 3 OS=Dictyostelium discoideum GN=DDB_G0290223 PE=3 SV=1

 Score = 90.5 bits (223), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 93/167 (55%), Gaps = 4/167 (2%)

Query: 12  YLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVKKLQLKRLLLLMLFDFGYGVPFGHFL 71
           Y+ +L+  P++TKA+T+  L+  S  +AQK    KK+    ++   ++      P  H+ 
Sbjct: 17  YMKKLKSKPIQTKALTSATLSFISSVVAQKFIEKKKINWNAVVKFTVWGL-ISSPLVHYW 75

Query: 72  NKFLDAIFKG-RDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDY 130
           +  LD +FK  +D      K++++QL+F+P+IN  F +    +++GKP   + K     +
Sbjct: 76  HIILDRLFKNIKDKYQSWGKLIVDQLVFAPFINIAFYSVLA-ILDGKPKSILFKLYFDLF 134

Query: 131 PAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKAE 177
           P ++  SWKVWP    +NF++ P   R LF +LV  CW I++++ A 
Sbjct: 135 PTLK-ASWKVWPLAQLINFRFVPSHLRVLFGNLVGFCWGIYLSILAT 180

Dictyostelium discoideum (taxid: 44689)

>sp|Q54XX9|PX24B_DICDI PXMP2/4 family protein 2 OS=Dictyostelium discoideum GN=DDB_G0278529 PE=3 SV=1

 Score = 80.9 bits (198), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 86/176 (48%), Gaps = 8/176 (4%)

Query: 5   VKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKIS-------GVKKLQLKRLLLLM 57
           +++ W  YL  L  HPL TK+++ G L G  D +AQ++           KL  KR+  + 
Sbjct: 1   MRKLWGLYLGLLDNHPLVTKSLSTGFLMGTGDILAQRLEHKFKDEKSQFKLDYKRVATMS 60

Query: 58  LFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGK 117
                Y  P  H+  + LD + KG     + KK+L++QL+F+P     FMT    +    
Sbjct: 61  TVGIFYSGPMLHYWYRSLDIMVKGEGRSVIIKKMLIDQLLFAPVAIGGFMTVTNFINNKG 120

Query: 118 PWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFIN 173
              ++    ++ + AV+  +W +WP    +NF   P   R L+ S+++  W +F++
Sbjct: 121 ELKNLENFTKELFYAVKI-NWLIWPAAQIINFSLVPPNLRVLYSSIISIFWGMFLS 175

Dictyostelium discoideum (taxid: 44689)

>sp|P19258|MPV17_MOUSE Protein Mpv17 OS=Mus musculus GN=Mpv17 PE=2 SV=1

 Score = 80.5 bits (197), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 4/172 (2%)

Query: 9   WRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKI---SGVKKLQLKRLLLLMLFDFGYGV 65
           WR Y   L  HP + + +TAG L G  D I+Q++    G+++ Q  R L ++    G+  
Sbjct: 4   WRAYQRALAAHPWKVQVLTAGSLMGVGDMISQQLVERRGLQQHQAGRTLTMVSLGCGFVG 63

Query: 66  PFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKK 125
           P      K LD +  G       KK+LL+Q  F+P     F+   G ++ G        K
Sbjct: 64  PVVGGWYKVLDHLIPGTTKVHALKKMLLDQGGFAPCFLGCFLPLVG-ILNGMSAQDNWAK 122

Query: 126 VRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKAE 177
           +++DYP    T++ +WP V   NF   P  +R      VA  W  +++ KA 
Sbjct: 123 LKRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAIVWNSYLSWKAH 174

Involved in mitochondria homeostasis. May be involved in the metabolism of reactive oxygen species and control of oxidative phosphorylation and mitochondrial DNA (mtDNA) maintenance.

Mus musculus (taxid: 10090)

>sp|Q5BK62|MPV17_RAT Protein Mpv17 OS=Rattus norvegicus GN=Mpv17 PE=2 SV=1

 Score = 80.5 bits (197), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 4/172 (2%)

Query: 9   WRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKI---SGVKKLQLKRLLLLMLFDFGYGV 65
           WR Y   L  HP + + +TAG L G  D I+Q++    G+++ Q  R L +     G+  
Sbjct: 4   WRAYQRALAAHPWKVQVLTAGSLMGLGDIISQQLVERRGLQQHQTGRTLTMASLGCGFVG 63

Query: 66  PFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKK 125
           P      + LD +  G    +  KK+LL+Q  F+P     F+   G V+ G        K
Sbjct: 64  PVVGGWYRVLDHLIPGTTKVNALKKMLLDQGGFAPCFLGCFLPLVG-VLNGMSAQDNWAK 122

Query: 126 VRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKAE 177
           +++DYP    T++ +WP V   NF   P  +R      VA  W  +++ KA 
Sbjct: 123 LKRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVVWNSYLSWKAH 174

Involved in mitochondria homeostasis. May be involved in the metabolism of reactive oxygen species and control of oxidative phosphorylation and mitochondrial DNA (mtDNA) maintenance.

Rattus norvegicus (taxid: 10116)

>sp|Q07066|PXMP2_RAT Peroxisomal membrane protein 2 OS=Rattus norvegicus GN=Pxmp2 PE=1 SV=2

 Score = 79.7 bits (195), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 100/179 (55%), Gaps = 10/179 (5%)

Query: 1   MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVKK-----LQLKRLLL 55
           + ++ K A  +YL+ L+ +P+ TKA+++G+L+   + +AQ I   +K     L++  LL 
Sbjct: 14  LRSLPKRALAQYLLFLKFYPVVTKAVSSGILSALGNLLAQMIEKKQKKDSRSLEVSGLLR 73

Query: 56  LMLFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGL-VV 114
            +++      P  H+L  F++         +  K++LL++L F+P   FL + +F + ++
Sbjct: 74  YLVYGLFVTGPLSHYLYLFMEYWVPPEVPWARVKRLLLDRLFFAP--TFLLLFFFVMNLL 131

Query: 115 EGKPWGSVMKKVRKDY-PAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFI 172
           EGK     + K+R  + PA+Q  +W++W  + ++N  Y P QFR LF ++ A  W  ++
Sbjct: 132 EGKNISVFVAKMRSGFWPALQ-MNWRMWTPLQFININYVPLQFRVLFANMAALFWYAYL 189

Seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the peroxisomal membrane.

Rattus norvegicus (taxid: 10116)

>sp|Q66GV0|MPV17_XENLA Protein Mpv17 OS=Xenopus laevis GN=mpv17 PE=2 SV=2

 Score = 77.8 bits (190), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 4/174 (2%)

Query: 9   WRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKI---SGVKKLQLKRLLLLMLFDFGYGV 65
           WR Y   L  HP + + +TAG L G  D I+Q++    G+K   ++R + +M   F +  
Sbjct: 5   WRAYQRLLGAHPWKVQIVTAGSLVGVGDVISQQLLERKGLKGHSIERTVKMMGIGFCFVG 64

Query: 66  PFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKK 125
           P      K LD I  G       KK+LL+Q+ F+P     F++     + G     +  K
Sbjct: 65  PVVGGWYKILDRIIPGSGKPVALKKMLLDQVAFAPCFLGCFLS-IASALNGLSGEQIWGK 123

Query: 126 VRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKAESA 179
           +++DY     T++ +WP V   NF + P   R      VA  W  +++ KA  +
Sbjct: 124 LKRDYKDALITNYYIWPAVQVANFYFIPLYHRLAVVQFVAIIWNSYLSWKANKS 177

Involved in mitochondria homeostasis.

Xenopus laevis (taxid: 8355)

>sp|P39210|MPV17_HUMAN Protein Mpv17 OS=Homo sapiens GN=MPV17 PE=1 SV=1

 Score = 77.4 bits (189), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 4/172 (2%)

Query: 9   WRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKI---SGVKKLQLKRLLLLMLFDFGYGV 65
           WR Y   L  HP + + +TAG L G  D I+Q++    G+++ Q  R L ++    G+  
Sbjct: 4   WRAYQRALAAHPWKVQVLTAGSLMGLGDIISQQLVERRGLQEHQRGRTLTMVSLGCGFVG 63

Query: 66  PFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKK 125
           P      K LD    G       KK+LL+Q  F+P     F+   G  + G        K
Sbjct: 64  PVVGGWYKVLDRFIPGTTKVDALKKMLLDQGGFAPCFLGCFLPLVG-ALNGLSAQDNWAK 122

Query: 126 VRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKAE 177
           +++DYP    T++ +WP V   NF   P  +R      VA  W  +++ KA 
Sbjct: 123 LQRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVIWNSYLSWKAH 174

Involved in mitochondria homeostasis. May be involved in the metabolism of reactive oxygen species and control of oxidative phosphorylation and mitochondrial DNA (mtDNA) maintenance.

Homo sapiens (taxid: 9606)

>sp|Q2KIY1|PXMP2_BOVIN Peroxisomal membrane protein 2 OS=Bos taurus GN=PXMP2 PE=2 SV=3

 Score = 77.0 bits (188), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 98/183 (53%), Gaps = 16/183 (8%)

Query: 1   MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKI-------SGVKKLQLKRL 53
           +  + + A  +YL  L+++P+ TKA T+G+L+   + +AQ I       +  +KL +   
Sbjct: 14  LGPLPRRALSQYLRLLRLYPVLTKAATSGILSALGNFLAQLIEKKQKKENCSQKLDVSGP 73

Query: 54  LLLMLFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLV 113
           L   ++ F +  P GHF    ++         +  K++LL++L+F+P     F++ F LV
Sbjct: 74  LRYAIYGFFFTGPLGHFFYLLMERWIPSEVPLAGIKRLLLDRLLFAP----AFLSLFFLV 129

Query: 114 ---VEGKPWGSVMKKVRKDY-PAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWA 169
              +EG+   +   K++  + PA++  +W+VW  V ++N  Y P QFR LF +LVA  W 
Sbjct: 130 MNFLEGQDTAAFAAKMKSGFWPALR-MNWRVWTPVQFININYIPVQFRVLFANLVALFWY 188

Query: 170 IFI 172
            ++
Sbjct: 189 AYL 191

Seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the peroxisomal membrane.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
297800820	185	predicted protein [Arabidopsis lyrata su	0.989	0.983	0.715	4e-72
79325105	185	Peroxisomal membrane 22 kDa (Mpv17/PMP22	0.989	0.983	0.710	2e-71
225433201	185	PREDICTED: peroxisomal membrane protein	0.994	0.989	0.690	3e-71
147795757	185	hypothetical protein VITISV_012682 [Viti	0.994	0.989	0.690	4e-71
449458842	183	PREDICTED: peroxisomal membrane protein	0.967	0.972	0.675	4e-66
449520295	183	PREDICTED: LOW QUALITY PROTEIN: peroxiso	0.967	0.972	0.675	5e-66
351727218	185	uncharacterized protein LOC100527292 [Gl	0.989	0.983	0.644	1e-64
195611428	187	peroxisomal membrane protein PMP22 [Zea	0.956	0.941	0.638	1e-62
255575843	176	peroxisomal membrane protein 2, pxmp2, p	0.934	0.977	0.699	2e-62
226491664	187	uncharacterized protein LOC100280092 [Ze	0.956	0.941	0.632	5e-62

>gi|297800820|ref|XP_002868294.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297314130|gb|EFH44553.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  275 bits (704), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 131/183 (71%), Positives = 151/183 (82%), Gaps = 1/183 (0%)

Query: 1   MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVKKLQLKRLLLLMLFD 60
           MS++ K+AWRKYLIQLQ HPLRTKAITAGVL GCSDAIAQKISGVK++Q +RLLLLML+ 
Sbjct: 1   MSDLAKDAWRKYLIQLQAHPLRTKAITAGVLTGCSDAIAQKISGVKRIQFRRLLLLMLYG 60

Query: 61  FGYGVPFGHFLNKFLDAIFKGR-DNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPW 119
           F YG PFGHF +K +D IFKG+  N +VAKKVLLEQL  SPW NFLFM+Y+GLVVEG+PW
Sbjct: 61  FAYGGPFGHFFHKLMDTIFKGKKGNSTVAKKVLLEQLTSSPWNNFLFMSYYGLVVEGRPW 120

Query: 120 GSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKAESA 179
             V +KV KDYP +Q T+WK WP V WVN+QY P QFR LF S VASCW+IF+NLKA S 
Sbjct: 121 KLVKQKVGKDYPTIQLTAWKFWPIVGWVNYQYVPLQFRVLFSSFVASCWSIFLNLKARSP 180

Query: 180 AIK 182
           AIK
Sbjct: 181 AIK 183

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79325105|ref|NP_001031637.1| Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein [Arabidopsis thaliana] gi|62321523|dbj|BAD95003.1| hypothetical protein [Arabidopsis thaliana] gi|98961831|gb|ABF59245.1| unknown protein [Arabidopsis thaliana] gi|332658013|gb|AEE83413.1| Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein [Arabidopsis thaliana]

 Score =  273 bits (698), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 130/183 (71%), Positives = 150/183 (81%), Gaps = 1/183 (0%)

Query: 1   MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVKKLQLKRLLLLMLFD 60
           MS++ K+AWRKYLIQLQ HPLRTKAITAGVLAGCSDAIAQKISGVK++Q +RLLLLML+ 
Sbjct: 1   MSDLAKDAWRKYLIQLQAHPLRTKAITAGVLAGCSDAIAQKISGVKRIQFRRLLLLMLYG 60

Query: 61  FGYGVPFGHFLNKFLDAIFKGR-DNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPW 119
           F YG PFGHF +K +D IFKG+  N +VAKKVLLEQL  SPW NFLFM+Y+GLVVEG+PW
Sbjct: 61  FAYGGPFGHFFHKLMDTIFKGKKGNSTVAKKVLLEQLTSSPWNNFLFMSYYGLVVEGRPW 120

Query: 120 GSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKAESA 179
             V  K+ KDYP +Q T+WK WP V WVN+QY P QFR LF S VASCW+IF+NLKA S 
Sbjct: 121 KLVKHKLGKDYPTIQLTAWKFWPIVGWVNYQYVPLQFRVLFSSFVASCWSIFLNLKARSP 180

Query: 180 AIK 182
            IK
Sbjct: 181 VIK 183

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433201|ref|XP_002285350.1| PREDICTED: peroxisomal membrane protein PMP22 [Vitis vinifera] gi|296083689|emb|CBI23678.3| unnamed protein product [Vitis vinifera]

 Score =  273 bits (697), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 127/184 (69%), Positives = 151/184 (82%), Gaps = 1/184 (0%)

Query: 1   MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVKKLQLKRLLLLMLFD 60
           MS+++K AWR YL+QLQ+HPLRTKAITAGVL GCSD IAQKISG+K+LQL+RL+L+ML+ 
Sbjct: 1   MSDLIKAAWRNYLLQLQLHPLRTKAITAGVLVGCSDVIAQKISGIKRLQLRRLILMMLYG 60

Query: 61  FGYGVPFGHFLNKFLDAIFKGR-DNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPW 119
           F Y  PFGHFL+K +D IF+G+ DN +VAKKV+LEQL  SPW N  FM Y+GLVVEG+ W
Sbjct: 61  FAYSGPFGHFLHKLMDIIFRGKKDNTTVAKKVVLEQLTSSPWNNMFFMMYYGLVVEGRGW 120

Query: 120 GSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKAESA 179
           G V  KVRKDYP+VQ T+WK WP V WVN+QY P QFR +F S VASCWAIF+NLKA S 
Sbjct: 121 GLVRNKVRKDYPSVQLTAWKFWPIVGWVNYQYMPLQFRVVFHSFVASCWAIFLNLKARSV 180

Query: 180 AIKK 183
           AIKK
Sbjct: 181 AIKK 184

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147795757|emb|CAN76530.1| hypothetical protein VITISV_012682 [Vitis vinifera]

 Score =  272 bits (696), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 127/184 (69%), Positives = 151/184 (82%), Gaps = 1/184 (0%)

Query: 1   MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVKKLQLKRLLLLMLFD 60
           MS+++K AWR YL+QLQ+HPLRTKAITAGVL GCSD IAQKISG+K+LQL+RL+L+ML+ 
Sbjct: 1   MSDLIKAAWRNYLLQLQLHPLRTKAITAGVLVGCSDVIAQKISGIKRLQLRRLILMMLYG 60

Query: 61  FGYGVPFGHFLNKFLDAIFKGR-DNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPW 119
           F Y  PFGHFL+K +D IF+G+ DN +VAKKV+LEQL  SPW N  FM Y+GLVVEG+ W
Sbjct: 61  FAYSGPFGHFLHKLMDIIFRGKKDNTTVAKKVVLEQLTSSPWNNMFFMMYYGLVVEGRGW 120

Query: 120 GSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKAESA 179
           G V  KVRKDYP+VQ T+WK WP V WVN+QY P QFR +F S VASCWAIF+NLKA S 
Sbjct: 121 GLVKNKVRKDYPSVQLTAWKFWPIVGWVNYQYMPLQFRVVFHSFVASCWAIFLNLKARSV 180

Query: 180 AIKK 183
           AIKK
Sbjct: 181 AIKK 184

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458842|ref|XP_004147155.1| PREDICTED: peroxisomal membrane protein PMP22-like [Cucumis sativus]

 Score =  255 bits (652), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 121/179 (67%), Positives = 143/179 (79%), Gaps = 1/179 (0%)

Query: 1   MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVKKLQLKRLLLLMLFD 60
           MS+IV EAW+ YL+QLQ +PLRTKAITAGVLAG SD++AQKISG+KKLQ +RLLLLML+ 
Sbjct: 1   MSSIVTEAWQGYLLQLQKNPLRTKAITAGVLAGISDSVAQKISGIKKLQFRRLLLLMLYG 60

Query: 61  FGYGVPFGHFLNKFLDAIFKGR-DNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPW 119
           F Y  PFGHFL+K +D IFKG+  N +VAKKVLLEQ+  SPW N  FM Y+GLVVEG+PW
Sbjct: 61  FAYAGPFGHFLHKLMDRIFKGKKGNTTVAKKVLLEQVTSSPWNNLFFMMYYGLVVEGRPW 120

Query: 120 GSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKAES 178
             V  KVRKDYP +Q T+W+ WP V WVN+QY P QFR +F S VASCW IF+NLKA S
Sbjct: 121 SLVKAKVRKDYPTIQLTAWRFWPIVGWVNYQYMPIQFRVIFHSFVASCWGIFLNLKARS 179

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520295|ref|XP_004167169.1| PREDICTED: LOW QUALITY PROTEIN: peroxisomal membrane protein PMP22-like [Cucumis sativus]

 Score =  255 bits (652), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 121/179 (67%), Positives = 144/179 (80%), Gaps = 1/179 (0%)

Query: 1   MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVKKLQLKRLLLLMLFD 60
           MS+IV EAW+ YL+QLQ +PLRTKAITAGVLAG SD++AQKISG+KKLQ +RLLLLML+ 
Sbjct: 1   MSSIVTEAWQGYLLQLQKNPLRTKAITAGVLAGISDSVAQKISGIKKLQFRRLLLLMLYG 60

Query: 61  FGYGVPFGHFLNKFLDAIFKGR-DNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPW 119
           F Y  PFGHFL+K +D IFKG+  N +VAKKVLLEQ+  SPW  F+FM Y+GLVVEG+PW
Sbjct: 61  FAYAGPFGHFLHKLMDRIFKGKKGNTTVAKKVLLEQVTSSPWNXFIFMMYYGLVVEGRPW 120

Query: 120 GSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKAES 178
             V  KVRKDYP +Q T+W+ WP V WVN+QY P QFR +F S VASCW IF+NLKA S
Sbjct: 121 SLVKAKVRKDYPTIQLTAWRFWPIVGWVNYQYMPIQFRVIFHSFVASCWGIFLNLKARS 179

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727218|ref|NP_001237665.1| uncharacterized protein LOC100527292 [Glycine max] gi|255632021|gb|ACU16363.1| unknown [Glycine max]

 Score =  251 bits (640), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 118/183 (64%), Positives = 146/183 (79%), Gaps = 1/183 (0%)

Query: 1   MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVKKLQLKRLLLLMLFD 60
           MS+ V   ++KYL QLQ+HPLRTKAITA  LAG SDA+AQK+SG K+LQL+R+LL ML+ 
Sbjct: 1   MSDEVNSVFKKYLNQLQLHPLRTKAITAAFLAGFSDAVAQKLSGAKELQLRRVLLFMLYG 60

Query: 61  FGYGVPFGHFLNKFLDAIFKG-RDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPW 119
           F Y  PFGHFL+K +D IFKG + N +VAKKV+LEQ+  SPW NFLFM Y+GLV+EG+PW
Sbjct: 61  FAYSGPFGHFLHKLMDKIFKGEKGNDTVAKKVILEQITSSPWNNFLFMMYYGLVIEGRPW 120

Query: 120 GSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKAESA 179
            +V+ KV+KDYP+VQ T+WK WP V WVN+QY P Q R +F S VA+CWAIF+NLKA S 
Sbjct: 121 STVINKVKKDYPSVQLTAWKFWPIVGWVNYQYMPLQLRVVFHSSVAACWAIFLNLKARSV 180

Query: 180 AIK 182
           AIK
Sbjct: 181 AIK 183

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195611428|gb|ACG27544.1| peroxisomal membrane protein PMP22 [Zea mays] gi|413921704|gb|AFW61636.1| peroxisomal membrane protein PMP22 [Zea mays]

 Score =  244 bits (622), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 113/177 (63%), Positives = 139/177 (78%), Gaps = 1/177 (0%)

Query: 1   MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVKKLQLKRLLLLMLFD 60
           MS +V  A + Y+ QLQ HPLRTKAIT+GVLAGCSDA+AQKISGV KLQL+RLLL+ L+ 
Sbjct: 1   MSEVVAMAGQAYMKQLQAHPLRTKAITSGVLAGCSDAVAQKISGVSKLQLRRLLLIALYG 60

Query: 61  FGYGVPFGHFLNKFLDAIFKGRDNK-SVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPW 119
           F Y  PFGHFL+K +D  FKG+  K + AKKVL+EQL  SPW N +FM YFGLVVEG+P+
Sbjct: 61  FAYAGPFGHFLHKLMDRFFKGKKGKETTAKKVLVEQLTASPWNNMMFMMYFGLVVEGRPF 120

Query: 120 GSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKA 176
           G V  KV+KDY +VQ T+W+ WP V+W+N++Y P Q R LF S VASCWA+F+NLKA
Sbjct: 121 GQVKNKVKKDYASVQLTAWRFWPIVSWINYEYMPLQLRVLFHSFVASCWAVFLNLKA 177

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575843|ref|XP_002528819.1| peroxisomal membrane protein 2, pxmp2, putative [Ricinus communis] gi|223531731|gb|EEF33553.1| peroxisomal membrane protein 2, pxmp2, putative [Ricinus communis]

 Score =  243 bits (620), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 121/173 (69%), Positives = 142/173 (82%), Gaps = 1/173 (0%)

Query: 1   MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVKKLQLKRLLLLMLFD 60
           MS+  KEAWRKYLIQLQ HPLRTKAITAGVLAGCSD IAQKISGVK+LQL+RLLL+ L+ 
Sbjct: 1   MSDTAKEAWRKYLIQLQAHPLRTKAITAGVLAGCSDTIAQKISGVKRLQLRRLLLITLYG 60

Query: 61  FGYGVPFGHFLNKFLDAIFKG-RDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPW 119
           F YG PFGHFL+K +D IFKG +D+K+VAKKVLLEQL+ SPW N  FM Y+GL+VEG+PW
Sbjct: 61  FAYGGPFGHFLHKLMDGIFKGKKDSKTVAKKVLLEQLVSSPWNNMFFMMYYGLIVEGRPW 120

Query: 120 GSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFI 172
           G V  KVRKDYP++Q T+WK WP V WVN QY P Q R LF S+V++CW + I
Sbjct: 121 GLVKGKVRKDYPSIQLTAWKFWPIVGWVNHQYMPLQLRVLFHSIVSACWCVSI 173

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226491664|ref|NP_001146502.1| uncharacterized protein LOC100280092 [Zea mays] gi|219887569|gb|ACL54159.1| unknown [Zea mays]

 Score =  242 bits (617), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 112/177 (63%), Positives = 138/177 (77%), Gaps = 1/177 (0%)

Query: 1   MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVKKLQLKRLLLLMLFD 60
           MS +V  A + Y+ QLQ HPLRTKAIT+GVLAGCSDA+AQKISGV KLQL+RLLL+ L+ 
Sbjct: 1   MSEVVAMAGQAYMKQLQAHPLRTKAITSGVLAGCSDAVAQKISGVSKLQLRRLLLIALYG 60

Query: 61  FGYGVPFGHFLNKFLDAIFKGRDNK-SVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPW 119
           F Y  PFGHFL+K +D  FKG+  K + AKKVL+EQL  SPW N + M YFGLVVEG+P+
Sbjct: 61  FAYAGPFGHFLHKLMDRFFKGKKGKETTAKKVLVEQLTASPWNNMMLMMYFGLVVEGRPF 120

Query: 120 GSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKA 176
           G V  KV+KDY +VQ T+W+ WP V+W+N++Y P Q R LF S VASCWA+F+NLKA
Sbjct: 121 GQVKNKVKKDYASVQLTAWRFWPIVSWINYEYMPLQLRVLFHSFVASCWAVFLNLKA 177

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
TAIR|locus:1009023385	185	AT4G14305 "AT4G14305" [Arabido	0.989	0.983	0.661	4.2e-63
TAIR|locus:2137124	190	PMP22 [Arabidopsis thaliana (t	0.956	0.926	0.474	1.1e-41
DICTYBASE|DDB_G0290223	184	DDB_G0290223 "pmp22 family pro	0.875	0.875	0.311	1.2e-19
TAIR|locus:2091767	235	AT3G24570 "AT3G24570" [Arabido	0.646	0.506	0.320	2.9e-17
DICTYBASE|DDB_G0290631	185	DDB_G0290631 "pmp22 family pro	0.907	0.902	0.302	4.1e-17
MGI|MGI:107487	194	Pxmp2 "peroxisomal membrane pr	0.918	0.871	0.273	1.1e-16
UNIPROTKB|G3V9N2	194	Pxmp2 "Peroxisomal membrane pr	0.918	0.871	0.273	3.7e-16
RGD|61812	194	Pxmp2 "peroxisomal membrane pr	0.918	0.871	0.273	4.7e-16
ZFIN|ZDB-GENE-040912-184	194	zgc:92599 "zgc:92599" [Danio r	0.913	0.865	0.283	1.3e-15
POMBASE|SPAC3G6.05	206	SPAC3G6.05 "Mpv17/PMP22 family	0.625	0.558	0.338	1.7e-15

TAIR|locus:1009023385 AT4G14305 "AT4G14305" [Arabidopsis thaliana (taxid:3702)]

 Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
 Identities = 121/183 (66%), Positives = 138/183 (75%)

Query:     1 MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVXXXXXXXXXXXXXFD 60
             MS++ K+AWRKYLIQLQ HPLRTKAITAGVLAGCSDAIAQKISGV             + 
Sbjct:     1 MSDLAKDAWRKYLIQLQAHPLRTKAITAGVLAGCSDAIAQKISGVKRIQFRRLLLLMLYG 60

Query:    61 FGYGVPFGHFLNKFLDAIFKGRD-NKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPW 119
             F YG PFGHF +K +D IFKG+  N +VAKKVLLEQL  SPW NFLFM+Y+GLVVEG+PW
Sbjct:    61 FAYGGPFGHFFHKLMDTIFKGKKGNSTVAKKVLLEQLTSSPWNNFLFMSYYGLVVEGRPW 120

Query:   120 GSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKAESA 179
               V  K+ KDYP +Q T+WK WP V WVN+QY P QFR LF S VASCW+IF+NLKA S 
Sbjct:   121 KLVKHKLGKDYPTIQLTAWKFWPIVGWVNYQYVPLQFRVLFSSFVASCWSIFLNLKARSP 180

Query:   180 AIK 182
              IK
Sbjct:   181 VIK 183

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2137124 PMP22 [Arabidopsis thaliana (taxid:3702)]

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 84/177 (47%), Positives = 115/177 (64%)

Query:     6 KEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVXXXXXXXXXXXXXFDFGYGV 65
             K   ++YL QLQ HPLRTKAITAGVL+G SD ++QK+SG+             F  G+  
Sbjct:     8 KTTLQRYLSQLQQHPLRTKAITAGVLSGVSDVVSQKLSGIQKIQLRRVLLKVIFAGGFLG 67

Query:    66 PFGHFLNKFLDAIFKGR-DNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMK 124
             P GHF + +LD  FKG+ D ++VAKKV+LEQL  SP  + LFM Y+G+V+E  PW  V +
Sbjct:    68 PAGHFFHTYLDKFFKGKKDTQTVAKKVILEQLTLSPLNHLLFMIYYGVVIERTPWTLVRE 127

Query:   125 KVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKAESAAI 181
             +++K YP VQ T+W  +P V W+N++Y P  FR +  SLVA  W IF+ L+A S  +
Sbjct:   128 RIKKTYPTVQLTAWTFFPVVGWINYKYVPLHFRVILHSLVAFFWGIFLTLRARSMTL 184

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IDA

DICTYBASE|DDB_G0290223 DDB_G0290223 "pmp22 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 52/167 (31%), Positives = 91/167 (54%)

Query:    12 YLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVXXXXXXXXXXXXXFDFGYGVPFGHFL 71
             Y+ +L+  P++TKA+T+  L+  S  +AQK                 +      P  H+ 
Sbjct:    17 YMKKLKSKPIQTKALTSATLSFISSVVAQKFIEKKKINWNAVVKFTVWGL-ISSPLVHYW 75

Query:    72 NKFLDAIFKG-RDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKD- 129
             +  LD +FK  +D      K++++QL+F+P+IN  F +    +++GKP  S++ K+  D 
Sbjct:    76 HIILDRLFKNIKDKYQSWGKLIVDQLVFAPFINIAFYSVLA-ILDGKP-KSILFKLYFDL 133

Query:   130 YPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKA 176
             +P ++  SWKVWP    +NF++ P   R LF +LV  CW I++++ A
Sbjct:   134 FPTLK-ASWKVWPLAQLINFRFVPSHLRVLFGNLVGFCWGIYLSILA 179

GO:0016021 "integral to membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2091767 AT3G24570 "AT3G24570" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
 Identities = 42/131 (32%), Positives = 67/131 (51%)

Query:    59 FDFGYGVPFGHF----LNKF--LDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGL 112
             F FG+  P GHF    L+KF  L   +  +  + VA KV ++ LIF P    +F TY G 
Sbjct:    86 FGFGFVGPVGHFWYEGLDKFIKLKLRYVPKSTRFVAAKVAMDGLIFGPVDLLVFFTYMGF 145

Query:   113 VVEGKPWGSVMKKVRKDY-PAVQFTSWKVWPTVTWVNFQYAPQQFRELF---FSLVASCW 168
                GK    V + +++D+ PA+       WP +   NF+Y P Q++ L+   F LV S +
Sbjct:   146 AT-GKNTAEVKEGLKRDFLPALALEGG-AWPLLQIANFRYVPVQYQLLYVNIFCLVDSAF 203

Query:   169 AIFINLKAESA 179
               ++  + ++A
Sbjct:   204 LSWVEQQKDAA 214

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005778 "peroxisomal membrane" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

DICTYBASE|DDB_G0290631 DDB_G0290631 "pmp22 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 52/172 (30%), Positives = 86/172 (50%)

Query:     5 VKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQ--KISGVXXXXXXXXXXXXXFDFG 62
             +K A   YL QL  +P+ TKA+T+G L   SD++ Q  ++S                 FG
Sbjct:     8 LKLAQSHYLSQLHKYPVATKAVTSGFLYLISDSLVQGIELSRDKDKKYDFKRSMRMAVFG 67

Query:    63 YGV--PFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWG 120
             + V  P  H+  K+LD  F  +  +    K+ ++Q++ SP  NFLF +  G ++EGK   
Sbjct:    68 FAVTGPLFHYWFKYLDKHFPKKSYRHAFIKLTIDQVVCSPVFNFLFFSGMG-ILEGKSKD 126

Query:   121 SVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFI 172
              +++K++KD+     +   VWP + +VNF Y     R  F ++    W  F+
Sbjct:   127 DIVEKLKKDWLTTYVSDCVVWPFINFVNFAYISSIHRVTFMNVCNIGWGAFL 178

GO:0016021 "integral to membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

MGI|MGI:107487 Pxmp2 "peroxisomal membrane protein 2" [Mus musculus (taxid:10090)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 49/179 (27%), Positives = 95/179 (53%)

Query:     1 MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVXXXXXXXXXXXXXFD 60
             + ++ K A  +YL+ L+++P+ TKA+++G+L+   + +AQ I                  
Sbjct:    14 LGSLPKRALAQYLLLLKLYPVLTKAVSSGILSALGNLLAQTIEKKQRKDSRLLEVSGLLR 73

Query:    61 F-GYGV----PFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGL-VV 114
             +  YG+    P  H+L  F++         +  K++LL++L F+P   FL + +F + ++
Sbjct:    74 YLVYGLFVTGPLSHYLYLFMEYSVPPEVPWASVKRLLLDRLFFAP--TFLLLFFFVMNLL 131

Query:   115 EGKPWGSVMKKVRKDY-PAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFI 172
             EGK     + K+R  + PA+Q  +W++W  + ++N  Y P QFR LF ++ A  W  ++
Sbjct:   132 EGKNVSVFVAKMRSGFWPALQM-NWRMWTPLQFININYVPLQFRVLFANMAALFWYAYL 189

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005777 "peroxisome" evidence=ISO

GO:0005778 "peroxisomal membrane" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0043234 "protein complex" evidence=ISO

UNIPROTKB|G3V9N2 Pxmp2 "Peroxisomal membrane protein 2, isoform CRA_b" [Rattus norvegicus (taxid:10116)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 49/179 (27%), Positives = 94/179 (52%)

Query:     1 MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVXXXXXXXXXXXXXFD 60
             + ++ K A  +YL+ L+ +P+ TKA+++G+L+   + +AQ I                  
Sbjct:    14 LGSLPKRALAQYLLFLKFYPVVTKAVSSGILSALGNLLAQMIEKKQKKDSRSLEVSGLLR 73

Query:    61 F-GYGV----PFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGL-VV 114
             +  YG+    P  H+L  F++         +  K++LL++L F+P   FL + +F + ++
Sbjct:    74 YLVYGLFVTGPLSHYLYLFMEYWVPPEVPWARVKRLLLDRLFFAP--TFLLLFFFVMNLL 131

Query:   115 EGKPWGSVMKKVRKDY-PAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFI 172
             EGK     + K+R  + PA+Q  +W++W  + ++N  Y P QFR LF ++ A  W  ++
Sbjct:   132 EGKNISVFVAKMRSGFWPALQM-NWRMWTPLQFININYVPLQFRVLFANMAALFWYAYL 189

GO:0005739 "mitochondrion" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

RGD|61812 Pxmp2 "peroxisomal membrane protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 49/179 (27%), Positives = 94/179 (52%)

Query:     1 MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVXXXXXXXXXXXXXFD 60
             + ++ K A  +YL+ L+ +P+ TKA+++G+L+   + +AQ I                  
Sbjct:    14 LRSLPKRALAQYLLFLKFYPVVTKAVSSGILSALGNLLAQMIEKKQKKDSRSLEVSGLLR 73

Query:    61 F-GYGV----PFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGL-VV 114
             +  YG+    P  H+L  F++         +  K++LL++L F+P   FL + +F + ++
Sbjct:    74 YLVYGLFVTGPLSHYLYLFMEYWVPPEVPWARVKRLLLDRLFFAP--TFLLLFFFVMNLL 131

Query:   115 EGKPWGSVMKKVRKDY-PAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFI 172
             EGK     + K+R  + PA+Q  +W++W  + ++N  Y P QFR LF ++ A  W  ++
Sbjct:   132 EGKNISVFVAKMRSGFWPALQM-NWRMWTPLQFININYVPLQFRVLFANMAALFWYAYL 189

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005777 "peroxisome" evidence=IDA

GO:0005778 "peroxisomal membrane" evidence=ISO;IDA

GO:0005779 "integral to peroxisomal membrane" evidence=TAS

GO:0043234 "protein complex" evidence=ISO

ZFIN|ZDB-GENE-040912-184 zgc:92599 "zgc:92599" [Danio rerio (taxid:7955)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 51/180 (28%), Positives = 89/180 (49%)

Query:     3 NIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKIS---GVXXXXXXXXXXXXX- 58
             +++  A ++YL  L+ +P+ TK++T+G+L+   + ++Q +     V              
Sbjct:    12 SLLARALQQYLSLLKKYPIITKSVTSGILSALGNLLSQVLEYQKNVKENSPKKKISILGP 71

Query:    59 FDFG-YGV----PFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLV 113
               F  YG+    P  H+    L+ +        + K++LLE+LIF+P    LF       
Sbjct:    72 VHFAIYGLFITGPVSHYFYHLLEVLLPTTVPYCLIKRLLLERLIFAPAFLLLFYVVMN-A 130

Query:   114 VEGKPWGSVMKKVRKDY-PAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFI 172
             +EGK    V  K++  Y PA++  +WKVW    ++N  Y P QFR LF ++VA  W  ++
Sbjct:   131 LEGKTLADVQNKLKTSYWPAMKM-NWKVWTPFQFININYVPVQFRVLFANMVALFWYAYL 189

GO:0016021 "integral to membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

POMBASE|SPAC3G6.05 SPAC3G6.05 "Mpv17/PMP22 family protein 1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 142 (55.0 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
 Identities = 42/124 (33%), Positives = 65/124 (52%)

Query:    61 FGYGV-PFGHFLNKFLDAIF---KGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEG 116
             FG+ + PF     + L A F   KG  N  V K+VLL+Q +F+P+    F ++  L  EG
Sbjct:    75 FGFAISPFQFRWLRLLSAKFPIEKGAIN--VVKRVLLDQAVFAPFGTAFFFSWMTLA-EG 131

Query:   117 KPWGSVMKKVRKDY-PAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLK 175
             K +     K++  + P ++  ++ VWP    VNF   P Q++  F   VA  W IF++LK
Sbjct:   132 KGFRGAYDKLQAVFWPTLK-ANYMVWPFFQTVNFWLMPLQYQMPFACTVAIFWNIFLSLK 190

Query:   176 AESA 179
               S+
Sbjct:   191 NASS 194

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0033554 "cellular response to stress" evidence=IEP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q4IPX8	SYM1_GIBZE	No assigned EC number	0.3040	0.8586	0.9028	yes	no
O14142	SYM1_SCHPO	No assigned EC number	0.3089	0.8967	0.8009	yes	no
Q54FR4	PX24D_DICDI	No assigned EC number	0.3197	0.9076	0.9027	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: Al_scaffold_0007_2909 annotation not avaliable (185 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	184
pfam04117	68	pfam04117, Mpv17_PMP22, Mpv17 / PMP22 family	2e-14

>gnl|CDD|202894 pfam04117, Mpv17_PMP22, Mpv17 / PMP22 family

 Score = 64.5 bits (158), Expect = 2e-14
 Identities = 19/64 (29%), Positives = 36/64 (56%)

Query: 113 VVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFI 172
           ++EGK    + +K+++ +      +WKVWP V ++NF + P  +R LF +LV   W  ++
Sbjct: 3   LLEGKSLEEIKEKLKEKFWPTLKANWKVWPPVQFINFAFVPVHYRVLFVNLVGIGWNTYL 62

Query: 173 NLKA 176
           +   
Sbjct: 63  SYVN 66

The 22-kDa peroxisomal membrane protein (PMP22) is a major component of peroxisomal membranes. PMP22 seems to be involved in pore forming activity and may contribute to the unspecific permeability of the organelle membrane. PMP22 is synthesised on free cytosolic ribosomes and then directed to the peroxisome membrane by specific targeting information. Mpv17 is a closely related peroxisomal protein. In mouse, the Mpv17 protein is involved in the development of early-onset glomerulosclerosis. More recently a homolog of Mpv17 in S. cerevisiae has been been found to be an integral membrane protein of the inner mitochondrial membrane where it has been proposed to have a role in ethanol metabolism and tolerance during heat-shock. Defects in MPV17 is associated with mitochondrial DNA depletion syndrome (MDDS) and Navajo neurohepatopathy (NNH). MDDS is a clinically heterogeneous group of disorders characterized by a reduction in mitochondrial DNA (mtDNA) copy number. Primary mtDNA depletion is inherited as an autosomal recessive trait and may affect single organs, typically muscle or liver, or multiple tissues. Individuals with the hepatocerebral form of mitochondrial DNA depletion syndrome have early progressive liver failure and neurologic abnormalities, hypoglycemia, and increased lactate in body fluids. NNH is an autosomal recessive disease that is prevalent among Navajo children in the South Western states of America. The major clinical features are hepatopathy, peripheral neuropathy, corneal anesthesia and scarring, acral mutilation, cerebral leukoencephalopathy, failure to thrive, and recurrent metabolic acidosis with intercurrent infections. Infantile, childhood, and classic forms of NNH have been described. Mitochondrial DNA depletion was detected in the livers of patients, suggesting a primary defect in mtDNA maintenance. Length = 68

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	184
KOG1944	222	consensus Peroxisomal membrane protein MPV17 and r	100.0
PF04117	68	Mpv17_PMP22: Mpv17 / PMP22 family ; InterPro: IPR0	99.92

>KOG1944 consensus Peroxisomal membrane protein MPV17 and related proteins [General function prediction only]

Probab=100.00  E-value=1e-41  Score=274.95  Aligned_cols=166  Identities=33%  Similarity=0.609  Sum_probs=158.0

Q ss_pred             HhhCcHHHHHHHHHHHH-HHHHHHHHhhhcC-----CcchHHHHHHHHHHhhhccchhHhHHHHHHhhhcCCCChHHHHH
Q 029963           16 LQVHPLRTKAITAGVLA-GCSDAIAQKISGV-----KKLQLKRLLLLMLFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAK   89 (184)
Q Consensus        16 l~~~Pl~t~~~t~~~l~-~~gD~~aQ~~~~~-----~~~D~~R~~r~~~~G~~~~gp~~~~wy~~L~~~~p~~~~~~~~~   89 (184)
                      ...+|+++++++++.+. ..||+++|.++.+     +++|+.|++||+++|+++.||.+|+||+.||+++|.++..++++
T Consensus        46 ~~~~~~l~~~i~~~~~~~~~~d~~~q~~~~~~~~~~~~~d~~rtlr~~~~G~~f~gp~~~~Wy~~L~~~~p~~~~~~~~~  125 (222)
T KOG1944|consen   46 FSLYPLLTKAITTSLLLAAAGDVISQSLEGRSKKLFQTLDLTRTLRMGIFGFLFVGPTLHYWYRLLSKLFPKKTLITVVK  125 (222)
T ss_pred             hhhhhHHHHHHHHHHHHHHhchhhhhhhhhhcccccccccHHHHHHHHhhhhheeccchhHHHHHHHHHccCccHHHHHH
Confidence            46789999999988888 9999999999852     56899999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHhcCCChhhHHHHHhhhChHHHHhccccchHHHHHHHheecCCchhhhhhHHHHHHH
Q 029963           90 KVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWA  169 (184)
Q Consensus        90 Kv~~Dq~v~~P~~~~~f~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~Wp~~~~inF~~vP~~~Rvl~~~~v~~~W~  169 (184)
                      |++.||++++|+.+..|+.+++ ++||++.+++.++++++++|+++++|++||++|++||++||+++|++++|+++++|+
T Consensus       126 kvl~dql~~~P~~~~~ff~~~~-~legk~~~~~~~~~~~~~~p~l~~~~~~WP~~q~inF~~VP~~~rvl~~~~vsl~W~  204 (222)
T KOG1944|consen  126 KVLLDQLVFAPLFIVVFFLLMG-LLEGKTNEEAKAKLKRKFWPTLKANWMVWPLVQFINFRLVPLQYRVLFVNIVSLVWN  204 (222)
T ss_pred             HHHHhhhhhchHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHhhhheecchhheeeeEEccccceehhhhhHHHHHH
Confidence            9999999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhchhhhh
Q 029963          170 IFINLKAESAAIK  182 (184)
Q Consensus       170 ~~LS~~~~~~~~~  182 (184)
                      +|||+++++.+++
T Consensus       205 ~~Ls~~~~~~~~~  217 (222)
T KOG1944|consen  205 TYLSYKNASLVEL  217 (222)
T ss_pred             HHHHHHhhccccc
Confidence            9999999998544

>PF04117 Mpv17_PMP22: Mpv17 / PMP22 family ; InterPro: IPR007248 The 22 kDa peroxisomal membrane protein (PMP22) is a major component of peroxisomal membranes

Probab=99.92  E-value=1.3e-25  Score=149.61  Aligned_cols=68  Identities=35%  Similarity=0.852  Sum_probs=65.8

Q ss_pred             HHHHhcCCChhhHHHHHhhhChHHHHhccccchHHHHHHHheecCCchhhhhhHHHHHHHHHHHHhhch
Q 029963          110 FGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKAES  178 (184)
Q Consensus       110 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~Wp~~~~inF~~vP~~~Rvl~~~~v~~~W~~~LS~~~~~  178 (184)
                      |+ ++||++++++.++++++++++++++|++|||+|++||.+||+++|++++|+++++||+|||+++||
T Consensus         1 Mg-~l~g~s~~~~~~~l~~~~~~~~~~~~~~Wp~~~~vnF~~vP~~~Rv~~~~~v~~~W~~~LS~~~~r   68 (68)
T PF04117_consen    1 MG-LLEGKSWEEIKEKLKRDYWPTLKASWKFWPPAQIVNFRYVPPHYRVLFVNVVSFFWNTYLSYIANR   68 (68)
T ss_pred             CC-cccCCCHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHhcC
Confidence            45 799999999999999999999999999999999999999999999999999999999999999986

PMP22 seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the organelle membrane. PMP22 is synthesised on free cytosolic ribosomes and then directed to the peroxisome membrane by specific targeting information []. Mpv17 is a closely related peroxisomal protein involved in the development of early-onset glomerulosclerosis []. A member of this family found in Saccharomyces cerevisiae (Baker's yeast) is an integral membrane protein of the inner mitochondrial membrane and has been suggested to play a role in mitochondrial function during heat shock [].; GO: 0016021 integral to membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00