Citrus Sinensis ID: 030050

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180---
Protein Sequence
MENCQMFFPCSSTGKSVYPVMTTTDYIANSSDHVFSHGDQSSSSGGFLGLKQNSGPKTDIVKNDSINGAFHGSESEGKSSKMKGEKKIKKPRFAFQTRSQVDILDDGYRWRKYGQKAVKDNKFPRSYYRCTHEGCNVKKQVQRLTNDEGIVVTTYEGMHNHRIEKPTDNFEHILNQLQIYTPF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccEEEcccccccccccccccccccccEEEEEccccccccccccccHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccHHHcccEEEccccccccEEEEccccccccEEEEEcccccEEEEEEEccccccccccccccccccHcHccHHccc
Coil and Loop (DISEMBL)
mencqmffpcsstgksvypvmtttdyianssdhvfshgdqssssggflglkqnsgpktdivkndsingafhgsesegksskmkgekkikkprfafqtrsqvdilddgyrwrkygqkavkdnkfprsyyrcthegcnvKKQVQRLTNDEGIVVTTYegmhnhriekptdnfEHILNQLQIYTPF
Flexible Loop (DISEMBL)
mencqmffpcsstgksvYPVMTTTDYIANSSDHVFSHGDQSSSSGGFLGLKQNSGPKTDIVKNDSINGafhgsesegksskmkgekkikkprfafqtrsqvdilddgyrwrkygqkavkdnkfprsyyrcthegcnvkkqvqrltNDEGIVVTTYEGMHNhriekptdnfeHILNQLQIYTPF
Low Complexity Region (SEG)
MENCQMFFPCSSTGKSVYPVMTTTDYIANSSDHVFSHGDQSSSSGGFLGLKQNSGPKTDIVKNDSINGAFHgsesegksskmkgekkikkPRFAFQTRSQVDILDDGYRWRKYGQKAVKDNKFPRSYYRCTHEGCNVKKQVQRLTNDEGIVVTTYEGMHNHRIEKPTDNFEHILNQLQIYTPF
Disordered region (IsUnstruct)
*****MFFPCSSTGKSVYPVMTTTDYIA****************************************************************FAFQTRSQVDILDDGYRWRKYGQKAVKDNKFPRSYYRCTHEGCNVKKQVQRLTNDEGIVVTTYEGMHNHRIEKPTDNFEHILNQLQIY***
Disordered Region (DISOPRED)
**********************************************************************************************FQTRSQVDILDDGYRWRKYGQKAVKDNKFPRSYYRCTHEGCNVKKQVQRLTNDEGIVVTTYEGMHN***********************
Disordered Region (DISEMBL)
MENCQMFFPCSSTGKSVYPVMTTTDYIANSSDHV**********GGFLGLKQNSGPKTDIVKNDSINGAFHG****************KKPRFAFQTRSQVDILDDGYRWRKYGQKAVKDNKFPRSYYRCTHEGCNVKKQVQRLTNDEGIVVTTYEGMHNHRIEKPTDNFEHILNQLQIYTPF
Disordered Region (DISPRO)
****************************************************************************************KKPRFAFQTRSQVDILDDGYRWRKYGQKAVKDNKFPRSYYRCTHEGCNVKKQVQRLTNDEGIVVTTYEGMHNH**********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MENCQMFFPCSSTGKSVYPVMTTTDYIANSSDHVFSHGDQSSSSGGFLGLKQNSGPKTDIVKNDSINGAFHGSESEGKSSKMKGEKKIKKPRFAFQTRSQVDILDDGYRWRKYGQKAVKDNKFPRSYYRCTHEGCNVKKQVQRLTNDEGIVVTTYEGMHNHRIEKPTDNFEHILNQLQIYTPF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	183	2.2.26 [Sep-21-2011]
Q9FYA2	145	Probable WRKY transcripti	yes	no	0.715	0.903	0.606	1e-41
Q9S763	147	Probable WRKY transcripti	no	no	0.502	0.625	0.75	1e-38
Q9FFS3	179	Probable WRKY transcripti	no	no	0.579	0.592	0.594	1e-31
Q8VWQ4	195	Probable WRKY transcripti	no	no	0.557	0.523	0.598	3e-31
Q8GY11	109	Probable WRKY transcripti	no	no	0.540	0.908	0.606	4e-31
Q9SVB7	304	Probable WRKY transcripti	no	no	0.546	0.328	0.56	2e-28
Q9C983	287	Probable WRKY transcripti	no	no	0.448	0.285	0.646	4e-28
Q93WY4	218	Probable WRKY transcripti	no	no	0.710	0.596	0.449	1e-27
Q8VWJ2	318	Probable WRKY transcripti	no	no	0.426	0.245	0.641	1e-25
Q9C5T3	309	Probable WRKY transcripti	no	no	0.448	0.265	0.559	3e-25

>sp|Q9FYA2|WRK75_ARATH Probable WRKY transcription factor 75 OS=Arabidopsis thaliana GN=WRKY75 PE=2 SV=1

 Score =  169 bits (428), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 94/155 (60%), Positives = 108/155 (69%), Gaps = 24/155 (15%)

Query: 39  DQSSSSGGFLGLKQNSGPKTDIVKNDSINGAFHGSESEGKSSKMKGE----------KKI 88
           D  S    FL LK +S P+             H  E E  SSK++ E          KK 
Sbjct: 5   DNGSLYAPFLSLKSHSKPE------------LHQGEEE--SSKVRSEGCSKSVESSKKKG 50

Query: 89  KKPRFAFQTRSQVDILDDGYRWRKYGQKAVKDNKFPRSYYRCTHEGCNVKKQVQRLTNDE 148
           KK R+AFQTRSQVDILDDGYRWRKYGQKAVK+NKFPRSYYRCT+ GCNVKKQVQRLT D+
Sbjct: 51  KKQRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTYGGCNVKKQVQRLTVDQ 110

Query: 149 GIVVTTYEGMHNHRIEKPTDNFEHILNQLQIYTPF 183
            +VVTTYEG+H+H IEK T+NFEHIL Q+QIY+ F
Sbjct: 111 EVVVTTYEGVHSHPIEKSTENFEHILTQMQIYSSF 145

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9S763|WRK45_ARATH Probable WRKY transcription factor 45 OS=Arabidopsis thaliana GN=WRKY45 PE=2 SV=1

 Score =  159 bits (401), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 69/92 (75%), Positives = 80/92 (86%)

Query: 92  RFAFQTRSQVDILDDGYRWRKYGQKAVKDNKFPRSYYRCTHEGCNVKKQVQRLTNDEGIV 151
           R+AFQTRSQVDILDDGYRWRKYGQKAVK+N FPRSYY+CT EGC VKKQVQR   DEG+V
Sbjct: 52  RYAFQTRSQVDILDDGYRWRKYGQKAVKNNPFPRSYYKCTEEGCRVKKQVQRQWGDEGVV 111

Query: 152 VTTYEGMHNHRIEKPTDNFEHILNQLQIYTPF 183
           VTTY+G+H H ++KP+DNF HIL Q+ I+ PF
Sbjct: 112 VTTYQGVHTHAVDKPSDNFHHILTQMHIFPPF 143

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFS3|WRK24_ARATH Probable WRKY transcription factor 24 OS=Arabidopsis thaliana GN=WRKY24 PE=2 SV=1

 Score =  135 bits (341), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/106 (59%), Positives = 75/106 (70%)

Query: 78  KSSKMKGEKKIKKPRFAFQTRSQVDILDDGYRWRKYGQKAVKDNKFPRSYYRCTHEGCNV 137
           K  ++K ++  K PR AF TRS  D+LDDGYRWRKYGQK+VK N  PRSYYRCT+  CNV
Sbjct: 71  KGKELKEKRSRKVPRIAFHTRSDDDVLDDGYRWRKYGQKSVKHNAHPRSYYRCTYHTCNV 130

Query: 138 KKQVQRLTNDEGIVVTTYEGMHNHRIEKPTDNFEHILNQLQIYTPF 183
           KKQVQRL  D  +VVTTYEG+HNH  EK  +    +L QLQ  + F
Sbjct: 131 KKQVQRLAKDPNVVVTTYEGVHNHPCEKLMETLNPLLRQLQFLSSF 176

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VWQ4|WRK56_ARATH Probable WRKY transcription factor 56 OS=Arabidopsis thaliana GN=WRKY56 PE=2 SV=1

 Score =  134 bits (337), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 61/102 (59%), Positives = 74/102 (72%)

Query: 80  SKMKGEKKIKKPRFAFQTRSQVDILDDGYRWRKYGQKAVKDNKFPRSYYRCTHEGCNVKK 139
           +K KG++ +   R AF TRS  D+LDDGYRWRKYGQK+VK+N  PRSYYRCT+  CNVKK
Sbjct: 89  NKGKGKRTLAMQRIAFHTRSDDDVLDDGYRWRKYGQKSVKNNAHPRSYYRCTYHTCNVKK 148

Query: 140 QVQRLTNDEGIVVTTYEGMHNHRIEKPTDNFEHILNQLQIYT 181
           QVQRL  D  +VVTTYEG+HNH  EK  +    +L QLQ  +
Sbjct: 149 QVQRLAKDPNVVVTTYEGVHNHPCEKLMETLSPLLRQLQFLS 190

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GY11|WRK43_ARATH Probable WRKY transcription factor 43 OS=Arabidopsis thaliana GN=WRKY43 PE=1 SV=1

 Score =  134 bits (336), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 60/99 (60%), Positives = 76/99 (76%)

Query: 85  EKKIKKPRFAFQTRSQVDILDDGYRWRKYGQKAVKDNKFPRSYYRCTHEGCNVKKQVQRL 144
           +KK+K PRF+F+T+S  DILDDGYRWRKYGQK+VK++ +PRSYYRCT   CNVKKQVQRL
Sbjct: 10  DKKMKNPRFSFRTKSDADILDDGYRWRKYGQKSVKNSLYPRSYYRCTQHMCNVKKQVQRL 69

Query: 145 TNDEGIVVTTYEGMHNHRIEKPTDNFEHILNQLQIYTPF 183
           + +  IV TTYEG+HNH  E+       +L+QLQ  + F
Sbjct: 70  SKETSIVETTYEGIHNHPCEELMQTLTPLLHQLQFLSKF 108

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVB7|WRK13_ARATH Probable WRKY transcription factor 13 OS=Arabidopsis thaliana GN=WRKY13 PE=2 SV=1

 Score =  125 bits (313), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 56/100 (56%), Positives = 74/100 (74%)

Query: 62  KNDSINGAFHGSESEGKSSKMKGEKKIKKPRFAFQTRSQVDILDDGYRWRKYGQKAVKDN 121
           ++D  N A  G  S  K  K+K  +K+++PRF F+T S+VD+LDDGYRWRKYGQK VK+ 
Sbjct: 180 RHDKHNTASLGVVSSLKMKKLKTRRKVREPRFCFKTLSEVDVLDDGYRWRKYGQKVVKNT 239

Query: 122 KFPRSYYRCTHEGCNVKKQVQRLTNDEGIVVTTYEGMHNH 161
           + PRSYYRCT + C VKK+V+RL +D  +V+TTYEG H H
Sbjct: 240 QHPRSYYRCTQDKCRVKKRVERLADDPRMVITTYEGRHLH 279

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C983|WRK57_ARATH Probable WRKY transcription factor 57 OS=Arabidopsis thaliana GN=WRKY57 PE=2 SV=1

 Score =  124 bits (311), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 53/82 (64%), Positives = 68/82 (82%)

Query: 81  KMKGEKKIKKPRFAFQTRSQVDILDDGYRWRKYGQKAVKDNKFPRSYYRCTHEGCNVKKQ 140
           K K +K+I++PRFAF T+S VD L+DGYRWRKYGQKAVK++ FPRSYYRCT+  C VKK+
Sbjct: 123 KKKAQKRIRQPRFAFMTKSDVDNLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSRCTVKKR 182

Query: 141 VQRLTNDEGIVVTTYEGMHNHR 162
           V+R ++D  IV+TTYEG H H+
Sbjct: 183 VERSSDDPSIVITTYEGQHCHQ 204

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WY4|WRK12_ARATH Probable WRKY transcription factor 12 OS=Arabidopsis thaliana GN=WRKY12 PE=2 SV=1

 Score =  122 bits (306), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/149 (44%), Positives = 87/149 (58%), Gaps = 19/149 (12%)

Query: 27  IANSSDHVFSHGDQSSSSGGFLGLKQNSGPKTDIVKNDSINGAFHGSESEGKSS------ 80
           I NSS    +H        GF    Q  GP    V ND       G+ ++  S+      
Sbjct: 58  IHNSSSTTTTHAPL-----GFSNNLQGGGPLGSKVVNDDQENFGGGTNNDAHSNSWWRSN 112

Query: 81  --------KMKGEKKIKKPRFAFQTRSQVDILDDGYRWRKYGQKAVKDNKFPRSYYRCTH 132
                   K+K  +K+++PRF FQT+S VD+LDDGY+WRKYGQK VK++  PRSYYRCTH
Sbjct: 113 SGSGDMKNKVKIRRKLREPRFCFQTKSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTH 172

Query: 133 EGCNVKKQVQRLTNDEGIVVTTYEGMHNH 161
             C VKK+V+RL+ D  +V+TTYEG HNH
Sbjct: 173 NNCRVKKRVERLSEDCRMVITTYEGRHNH 201

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VWJ2|WRK28_ARATH Probable WRKY transcription factor 28 OS=Arabidopsis thaliana GN=WRKY28 PE=2 SV=1

 Score =  115 bits (289), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 50/78 (64%), Positives = 64/78 (82%)

Query: 86  KKIKKPRFAFQTRSQVDILDDGYRWRKYGQKAVKDNKFPRSYYRCTHEGCNVKKQVQRLT 145
           KK ++PR +F T+S+VD L+DGYRWRKYGQKAVK++ +PRSYYRCT + CNVKK+V+R  
Sbjct: 153 KKQREPRVSFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSF 212

Query: 146 NDEGIVVTTYEGMHNHRI 163
            D  +V+TTYEG HNH I
Sbjct: 213 QDPTVVITTYEGQHNHPI 230

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5T3|WRK26_ARATH Probable WRKY transcription factor 26 OS=Arabidopsis thaliana GN=WRKY26 PE=2 SV=2

 Score =  114 bits (286), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 52/93 (55%), Positives = 64/93 (68%)

Query: 74  ESEGKSSKMKGEKKIKKPRFAFQTRSQVDILDDGYRWRKYGQKAVKDNKFPRSYYRCTHE 133
           E E ++ + K E+ +K+PR   QT S +DILDDGYRWRKYGQK VK N  PRSYY+CT  
Sbjct: 203 EDETEAKRWKREENVKEPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTFT 262

Query: 134 GCNVKKQVQRLTNDEGIVVTTYEGMHNHRIEKP 166
           GC V+K V+R   D   V+TTYEG H H+I  P
Sbjct: 263 GCFVRKHVERAFQDPKSVITTYEGKHKHQIPTP 295

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
383288273	166	WRKY transcription factor [Gossypium bar	0.896	0.987	0.605	1e-53
255536857	194	WRKY transcription factor, putative [Ric	0.972	0.917	0.613	2e-52
224057782	160	predicted protein [Populus trichocarpa]	0.775	0.887	0.703	3e-51
225451489	182	PREDICTED: probable WRKY transcription f	0.972	0.978	0.645	3e-51
198449163	190	WRKY DNA binding protein [Fragaria x ana	0.737	0.710	0.687	1e-48
449460557	170	PREDICTED: probable WRKY transcription f	0.912	0.982	0.591	2e-48
302399123	139	WRKY domain class transcription factor [	0.683	0.899	0.732	2e-48
224129302	102	predicted protein [Populus trichocarpa]	0.551	0.990	0.851	7e-47
351725685	188	WRKY53 [Glycine max] gi|83630933|gb|ABC2	0.912	0.888	0.534	2e-46
255547662	203	WRKY transcription factor, putative [Ric	0.857	0.773	0.646	2e-46

>gi|383288273|gb|AFH02532.1| WRKY transcription factor [Gossypium barbadense]

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 112/185 (60%), Positives = 127/185 (68%), Gaps = 21/185 (11%)

Query: 1   MENCQMFFPCS--STGKSVYPVMTTTDYIANSSDHVFSHGDQSSSSGGFLGLKQNSGPKT 58
           MEN QMFFP S  ST     P+    +  A +S H        +S  GFLGLK       
Sbjct: 1   MENYQMFFPISAPSTAAQSLPLNMAPNSQAFNSFH-------GNSVDGFLGLKSTE---- 49

Query: 59  DIVKNDSINGAFHGSESEGKSSKMKGEKKIKKPRFAFQTRSQVDILDDGYRWRKYGQKAV 118
           D+++          S+        K EKKI+KPR+AFQTRSQVDILDDGYRWRKYGQKAV
Sbjct: 50  DLIQKPEAKDFMKSSQ--------KMEKKIRKPRYAFQTRSQVDILDDGYRWRKYGQKAV 101

Query: 119 KDNKFPRSYYRCTHEGCNVKKQVQRLTNDEGIVVTTYEGMHNHRIEKPTDNFEHILNQLQ 178
           K+NKFPRSYYRCTHEGC VKKQVQRLT DE +VVTTYEGMH H I+KPTDNFEHIL+Q+Q
Sbjct: 102 KNNKFPRSYYRCTHEGCKVKKQVQRLTKDESVVVTTYEGMHTHPIQKPTDNFEHILSQMQ 161

Query: 179 IYTPF 183
           IYTPF
Sbjct: 162 IYTPF 166

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255536857|ref|XP_002509495.1| WRKY transcription factor, putative [Ricinus communis] gi|223549394|gb|EEF50882.1| WRKY transcription factor, putative [Ricinus communis]

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 122/199 (61%), Positives = 145/199 (72%), Gaps = 21/199 (10%)

Query: 1   MENCQMFFPCSSTGK---SVYPVMTTTDYIANSSDHVFSHGDQSSSSGGFLGLK------ 51
           ME  QM FP SST +   + YP+ +    + NS  H  S+ +  + S GFLGLK      
Sbjct: 1   MEKFQMLFPFSSTTEPSSATYPISSN---MINS--HALSNFEGINDSYGFLGLKIENDHQ 55

Query: 52  -QNSGPKTDIVKNDSINGAFH------GSESEGKSSKMKGEKKIKKPRFAFQTRSQVDIL 104
             +S  +T++  N+ +           GSESE KSSK KGEKKI+KPR+AFQTRSQVDIL
Sbjct: 56  VASSVSRTEVFNNNDLKSTQSHAHIAIGSESETKSSKKKGEKKIRKPRYAFQTRSQVDIL 115

Query: 105 DDGYRWRKYGQKAVKDNKFPRSYYRCTHEGCNVKKQVQRLTNDEGIVVTTYEGMHNHRIE 164
           DDGYRWRKYGQKAVK+NKFPRSYYRCT++GCNVKKQVQRLT DEG+V+TTYEG H H IE
Sbjct: 116 DDGYRWRKYGQKAVKNNKFPRSYYRCTYQGCNVKKQVQRLTKDEGVVITTYEGAHTHPIE 175

Query: 165 KPTDNFEHILNQLQIYTPF 183
           KPTDNFEHIL+Q+QIYTPF
Sbjct: 176 KPTDNFEHILSQMQIYTPF 194

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057782|ref|XP_002299321.1| predicted protein [Populus trichocarpa] gi|222846579|gb|EEE84126.1| predicted protein [Populus trichocarpa]

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 102/145 (70%), Positives = 116/145 (80%), Gaps = 3/145 (2%)

Query: 40  QSSSSGGFLGLKQN-SGPKTDI-VKNDSINGAFHGS-ESEGKSSKMKGEKKIKKPRFAFQ 96
           + +   GFLGL Q    P   + V N S N  F GS  SEG+  K +GEKKI+KP++AFQ
Sbjct: 16  EGAKGNGFLGLMQEMEAPAASLNVDNISQNRGFVGSITSEGRLEKKRGEKKIRKPKYAFQ 75

Query: 97  TRSQVDILDDGYRWRKYGQKAVKDNKFPRSYYRCTHEGCNVKKQVQRLTNDEGIVVTTYE 156
           TRSQVDILDDGYRWRKYGQKAVK+NKFPRSYYRCTH+GCNVKKQVQRLT DEGIVVTTYE
Sbjct: 76  TRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGIVVTTYE 135

Query: 157 GMHNHRIEKPTDNFEHILNQLQIYT 181
           G H+H+IEK TDNFE IL Q+QIY+
Sbjct: 136 GTHSHQIEKSTDNFEQILRQMQIYS 160

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451489|ref|XP_002274387.1| PREDICTED: probable WRKY transcription factor 45 [Vitis vinifera] gi|296082324|emb|CBI21329.3| unnamed protein product [Vitis vinifera] gi|388324555|gb|AFK27601.1| WRKY45 [Vitis amurensis]

 Score =  206 bits (524), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 120/186 (64%), Positives = 136/186 (73%), Gaps = 8/186 (4%)

Query: 1   MENCQMFFPCSSTGKSVYPVMTTTDYIAN-SSDHVFSHGDQSSSSGGFLGLKQNS--GPK 57
           MEN Q FF CSS+     P   +  + +N  S +VF +    S   GFLGLK      P 
Sbjct: 1   MENYQNFFACSSSA----PPPASMGFTSNMESSNVFGNVHGHSIPNGFLGLKSTEIHVPT 56

Query: 58  TDIVKNDS-INGAFHGSESEGKSSKMKGEKKIKKPRFAFQTRSQVDILDDGYRWRKYGQK 116
              V+N S  +G F  SE+E KS K K EKKI+KPR+AFQTRSQVDILDDGYRWRKYGQK
Sbjct: 57  GQEVENISRSSGGFGRSENEVKSCKKKYEKKIRKPRYAFQTRSQVDILDDGYRWRKYGQK 116

Query: 117 AVKDNKFPRSYYRCTHEGCNVKKQVQRLTNDEGIVVTTYEGMHNHRIEKPTDNFEHILNQ 176
           AVK+NKFPRSYYRCTH+GCNVKKQVQRL+ DE IVVTTYEG+H H IEKPTDNFEHILNQ
Sbjct: 117 AVKNNKFPRSYYRCTHQGCNVKKQVQRLSKDESIVVTTYEGVHTHPIEKPTDNFEHILNQ 176

Query: 177 LQIYTP 182
           +QIY P
Sbjct: 177 MQIYAP 182

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|198449163|gb|ACH88751.1| WRKY DNA binding protein [Fragaria x ananassa]

 Score =  197 bits (502), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 99/144 (68%), Positives = 110/144 (76%), Gaps = 9/144 (6%)

Query: 46  GFLGLKQNSGPKTDIVKNDSINGAFHGSESEGKSSKM------KGEKKIKKPRFAFQTRS 99
           GFLGL         +    SI      S  EG+S+        KG+KKI+KPR+AFQTRS
Sbjct: 50  GFLGLMSEMEVSNSM---SSITQQSMKSFGEGESNTAVRLGMKKGDKKIRKPRYAFQTRS 106

Query: 100 QVDILDDGYRWRKYGQKAVKDNKFPRSYYRCTHEGCNVKKQVQRLTNDEGIVVTTYEGMH 159
           QVDILDDGYRWRKYGQKAVK+NKFPRSYYRCTH+GCNVKKQVQRLT DEG+VVTTYEGMH
Sbjct: 107 QVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTRDEGVVVTTYEGMH 166

Query: 160 NHRIEKPTDNFEHILNQLQIYTPF 183
           +H IEK TDNFEHIL Q+QIYT F
Sbjct: 167 SHPIEKSTDNFEHILTQMQIYTSF 190

Source: Fragaria x ananassa

Species: Fragaria x ananassa

Genus: Fragaria

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460557|ref|XP_004148012.1| PREDICTED: probable WRKY transcription factor 75-like [Cucumis sativus] gi|449502001|ref|XP_004161516.1| PREDICTED: probable WRKY transcription factor 75-like [Cucumis sativus]

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 110/186 (59%), Positives = 126/186 (67%), Gaps = 19/186 (10%)

Query: 1   MENCQMFFPCSSTGKSVYPVMTTTDYIANSSDHV--FSHGDQSSSSGGFLGLKQNSGPKT 58
           MEN QMFFPCS  G  +            +SD    F  GD  + SG FLG+K+      
Sbjct: 1   MENYQMFFPCSDGGGGLSAYHHADMSSGGASDMFGNFQGGDMEAVSG-FLGMKREVDGG- 58

Query: 59  DIVKNDSINGAFHGSESEGKSSKMKGEKKIKKPRFAFQTRSQVDILDDGYRWRKYGQKAV 118
                         +       K KGEKK++KPR+AFQTRSQVDILDDGYRWRKYGQKAV
Sbjct: 59  --------------AVEAEGGGKKKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAV 104

Query: 119 KDNKFPRSYYRCTHEGCNVKKQVQRLTNDEGIVVTTYEGMHNHRIEKPTDNFEHILNQLQ 178
           K+NKFPRSYYRCTH+GCNVKKQVQRLT DEG+VVTTYEGMH H I+KPTDNFE IL+++Q
Sbjct: 105 KNNKFPRSYYRCTHQGCNVKKQVQRLTRDEGVVVTTYEGMHTHSIDKPTDNFEQILSRMQ 164

Query: 179 IY-TPF 183
           IY TPF
Sbjct: 165 IYSTPF 170

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399123|gb|ADL36856.1| WRKY domain class transcription factor [Malus x domestica]

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 96/131 (73%), Positives = 113/131 (86%), Gaps = 6/131 (4%)

Query: 59  DIVKND--SINGAFHGSESEGKSSKM---KG-EKKIKKPRFAFQTRSQVDILDDGYRWRK 112
           +++KN+  S   +F GSES   + ++   KG +KKI+KPR+AFQTRSQVDILDDGYRWRK
Sbjct: 9   NMIKNNFSSQGKSFGGSESGEATVRLGMKKGDQKKIRKPRYAFQTRSQVDILDDGYRWRK 68

Query: 113 YGQKAVKDNKFPRSYYRCTHEGCNVKKQVQRLTNDEGIVVTTYEGMHNHRIEKPTDNFEH 172
           YGQKAVK+NKFPRSYYRCTH GCNVKKQVQRLT DEG+VVTTYEGMH+H IEK TDNFEH
Sbjct: 69  YGQKAVKNNKFPRSYYRCTHHGCNVKKQVQRLTKDEGVVVTTYEGMHSHPIEKSTDNFEH 128

Query: 173 ILNQLQIYTPF 183
           IL+Q++IYTPF
Sbjct: 129 ILSQMKIYTPF 139

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129302|ref|XP_002328940.1| predicted protein [Populus trichocarpa] gi|222839370|gb|EEE77707.1| predicted protein [Populus trichocarpa]

 Score =  192 bits (487), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 86/101 (85%), Positives = 96/101 (95%)

Query: 83  KGEKKIKKPRFAFQTRSQVDILDDGYRWRKYGQKAVKDNKFPRSYYRCTHEGCNVKKQVQ 142
           KGEKK++KPR+AFQTRSQVDILDDGYRWRKYGQKAVK+NKFPRSYYRCT++GC VKKQVQ
Sbjct: 2   KGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTYQGCTVKKQVQ 61

Query: 143 RLTNDEGIVVTTYEGMHNHRIEKPTDNFEHILNQLQIYTPF 183
           RLT DEG+VVTTYEGMH+H IEK  DNFEHIL+Q+QIYTPF
Sbjct: 62  RLTKDEGVVVTTYEGMHSHPIEKSNDNFEHILSQMQIYTPF 102

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725685|ref|NP_001237357.1| WRKY53 [Glycine max] gi|83630933|gb|ABC26915.1| WRKY53 [Glycine max]

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 109/204 (53%), Positives = 128/204 (62%), Gaps = 37/204 (18%)

Query: 1   MENCQMFFPCSSTGKSVYPVMTTTDYIANSSDHVFSHGDQSSSSGGFLGLKQNSGPKTDI 60
           MEN  M F  S++  S YP+   +  I  S            SS  FLGL+    P  ++
Sbjct: 1   MENYSMLFSVSNS--SSYPIGVGSSQIGYSGQ----------SSNAFLGLR----PSNEL 44

Query: 61  VKND------SINGAFHGSESEGKSSKMKGE---------------KKIKKPRFAFQTRS 99
             +D        +G    S+  G S  +  E               KK++KPR+AFQTRS
Sbjct: 45  ASDDHEKRQGGGDGNMLMSQISGGSINVSDELGGSGNSNNNKKKGEKKVRKPRYAFQTRS 104

Query: 100 QVDILDDGYRWRKYGQKAVKDNKFPRSYYRCTHEGCNVKKQVQRLTNDEGIVVTTYEGMH 159
           QVDILDDGYRWRKYGQKAVK+NKFPRSYYRCTH+GCNVKKQVQRLT DEG+VVTTYEG+H
Sbjct: 105 QVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGVH 164

Query: 160 NHRIEKPTDNFEHILNQLQIYTPF 183
            H IEK TDNFEHIL Q+QIYTPF
Sbjct: 165 THPIEKTTDNFEHILGQMQIYTPF 188

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547662|ref|XP_002514888.1| WRKY transcription factor, putative [Ricinus communis] gi|223545939|gb|EEF47442.1| WRKY transcription factor, putative [Ricinus communis]

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 108/167 (64%), Positives = 123/167 (73%), Gaps = 10/167 (5%)

Query: 27  IANSSDHVFSHGDQSSSSGGFLGLKQNS----GPKTDIVKNDSINGAFHGSESEGKSSKM 82
           + +SS + F+   Q++   G LGL Q      G       N S N +F G  SE    K+
Sbjct: 37  MGSSSINGFTDYFQANKENGLLGLVQEMEVPMGLSNGHSNNLSQNKSFGGFGSENNEEKL 96

Query: 83  ------KGEKKIKKPRFAFQTRSQVDILDDGYRWRKYGQKAVKDNKFPRSYYRCTHEGCN 136
                 KGEKK+KKPR+AFQTRSQVDILDDGYRWRKYGQKAVK+NKFPRSYYRCTH+GCN
Sbjct: 97  LSSGKKKGEKKMKKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCN 156

Query: 137 VKKQVQRLTNDEGIVVTTYEGMHNHRIEKPTDNFEHILNQLQIYTPF 183
           VKKQVQRLT DEGIVVTTYEGMH+H IEK TDNFEHIL+Q+QIYT F
Sbjct: 157 VKKQVQRLTRDEGIVVTTYEGMHSHPIEKSTDNFEHILSQMQIYTSF 203

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
TAIR|locus:2078703	147	WRKY45 "WRKY DNA-binding prote	0.502	0.625	0.75	6.6e-41
TAIR|locus:2179862	145	WRKY75 "WRKY DNA-binding prote	0.502	0.634	0.815	4.8e-39
TAIR|locus:2160512	179	WRKY24 "WRKY DNA-binding prote	0.508	0.519	0.645	1e-29
TAIR|locus:2024583	195	WRKY56 "WRKY DNA-binding prote	0.475	0.446	0.666	1.2e-28
TAIR|locus:2062949	109	WRKY43 "WRKY DNA-binding prote	0.508	0.853	0.612	1.9e-28
TAIR|locus:2122496	304	WRKY13 "WRKY DNA-binding prote	0.387	0.233	0.661	1.9e-26
TAIR|locus:2019382	282	WRKY71 "WRKY DNA-binding prote	0.918	0.595	0.402	3.2e-26
TAIR|locus:505006317	218	WRKY12 "WRKY DNA-binding prote	0.387	0.325	0.690	1.4e-25
TAIR|locus:2007081	287	WRKY57 "AT1G69310" [Arabidopsi	0.393	0.250	0.680	1.2e-24
TAIR|locus:2141872	318	WRKY28 "WRKY DNA-binding prote	0.415	0.238	0.641	1.6e-24

TAIR|locus:2078703 WRKY45 "WRKY DNA-binding protein 45" [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 6.6e-41, Sum P(2) = 6.6e-41
 Identities = 69/92 (75%), Positives = 80/92 (86%)

Query:    92 RFAFQTRSQVDILDDGYRWRKYGQKAVKDNKFPRSYYRCTHEGCNVKKQVQRLTNDEGIV 151
             R+AFQTRSQVDILDDGYRWRKYGQKAVK+N FPRSYY+CT EGC VKKQVQR   DEG+V
Sbjct:    52 RYAFQTRSQVDILDDGYRWRKYGQKAVKNNPFPRSYYKCTEEGCRVKKQVQRQWGDEGVV 111

Query:   152 VTTYEGMHNHRIEKPTDNFEHILNQLQIYTPF 183
             VTTY+G+H H ++KP+DNF HIL Q+ I+ PF
Sbjct:   112 VTTYQGVHTHAVDKPSDNFHHILTQMHIFPPF 143

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2179862 WRKY75 "WRKY DNA-binding protein 75" [Arabidopsis thaliana (taxid:3702)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 75/92 (81%), Positives = 85/92 (92%)

Query:    92 RFAFQTRSQVDILDDGYRWRKYGQKAVKDNKFPRSYYRCTHEGCNVKKQVQRLTNDEGIV 151
             R+AFQTRSQVDILDDGYRWRKYGQKAVK+NKFPRSYYRCT+ GCNVKKQVQRLT D+ +V
Sbjct:    54 RYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTYGGCNVKKQVQRLTVDQEVV 113

Query:   152 VTTYEGMHNHRIEKPTDNFEHILNQLQIYTPF 183
             VTTYEG+H+H IEK T+NFEHIL Q+QIY+ F
Sbjct:   114 VTTYEGVHSHPIEKSTENFEHILTQMQIYSSF 145

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0032107 "regulation of response to nutrient levels" evidence=IMP

GO:0043620 "regulation of DNA-dependent transcription in response to stress" evidence=IMP

GO:0048527 "lateral root development" evidence=IMP

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

TAIR|locus:2160512 WRKY24 "WRKY DNA-binding protein 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 60/93 (64%), Positives = 68/93 (73%)

Query:    91 PRFAFQTRSQVDILDDGYRWRKYGQKAVKDNKFPRSYYRCTHEGCNVKKQVQRLTNDEGI 150
             PR AF TRS  D+LDDGYRWRKYGQK+VK N  PRSYYRCT+  CNVKKQVQRL  D  +
Sbjct:    84 PRIAFHTRSDDDVLDDGYRWRKYGQKSVKHNAHPRSYYRCTYHTCNVKKQVQRLAKDPNV 143

Query:   151 VVTTYEGMHNHRIEKPTDNFEHILNQLQIYTPF 183
             VVTTYEG+HNH  EK  +    +L QLQ  + F
Sbjct:   144 VVTTYEGVHNHPCEKLMETLNPLLRQLQFLSSF 176

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2024583 WRKY56 "WRKY DNA-binding protein 56" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 58/87 (66%), Positives = 66/87 (75%)

Query:    92 RFAFQTRSQVDILDDGYRWRKYGQKAVKDNKFPRSYYRCTHEGCNVKKQVQRLTNDEGIV 151
             R AF TRS  D+LDDGYRWRKYGQK+VK+N  PRSYYRCT+  CNVKKQVQRL  D  +V
Sbjct:   101 RIAFHTRSDDDVLDDGYRWRKYGQKSVKNNAHPRSYYRCTYHTCNVKKQVQRLAKDPNVV 160

Query:   152 VTTYEGMHNHRIEKPTDNFEHILNQLQ 178
             VTTYEG+HNH  EK  +    +L QLQ
Sbjct:   161 VTTYEGVHNHPCEKLMETLSPLLRQLQ 187

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2062949 WRKY43 "WRKY DNA-binding protein 43" [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 57/93 (61%), Positives = 71/93 (76%)

Query:    91 PRFAFQTRSQVDILDDGYRWRKYGQKAVKDNKFPRSYYRCTHEGCNVKKQVQRLTNDEGI 150
             PRF+F+T+S  DILDDGYRWRKYGQK+VK++ +PRSYYRCT   CNVKKQVQRL+ +  I
Sbjct:    16 PRFSFRTKSDADILDDGYRWRKYGQKSVKNSLYPRSYYRCTQHMCNVKKQVQRLSKETSI 75

Query:   151 VVTTYEGMHNHRIEKPTDNFEHILNQLQIYTPF 183
             V TTYEG+HNH  E+       +L+QLQ  + F
Sbjct:    76 VETTYEGIHNHPCEELMQTLTPLLHQLQFLSKF 108

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2122496 WRKY13 "WRKY DNA-binding protein 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
 Identities = 47/71 (66%), Positives = 58/71 (81%)

Query:    91 PRFAFQTRSQVDILDDGYRWRKYGQKAVKDNKFPRSYYRCTHEGCNVKKQVQRLTNDEGI 150
             PRF F+T S+VD+LDDGYRWRKYGQK VK+ + PRSYYRCT + C VKK+V+RL +D  +
Sbjct:   209 PRFCFKTLSEVDVLDDGYRWRKYGQKVVKNTQHPRSYYRCTQDKCRVKKRVERLADDPRM 268

Query:   151 VVTTYEGMHNH 161
             V+TTYEG H H
Sbjct:   269 VITTYEGRHLH 279

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2019382 WRKY71 "WRKY DNA-binding protein 71" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 72/179 (40%), Positives = 99/179 (55%)

Query:     1 MENCQMFFPCSSTGKSVYPVMTTTDYIANSSDHVFSHGDQSSSSGGFLGLKQNSGPKTDI 60
             +E    F P SS  +SV P +        S+  V S    SSS+ G    K+N+  K+D 
Sbjct:    36 LEKVFKFSPYSSPFQSVSPSVNNPYLNLTSNSPVVS----SSSNEG--EPKENTNDKSDQ 89

Query:    61 VKNDS--INGAFHXXXXXXXXXXXXXXXXXXXPRFAFQTRSQVDILDDGYRWRKYGQKAV 118
             ++++   ++G                       R AF T+S++D L+DGYRWRKYGQKAV
Sbjct:    90 MEDNEGDLHGVGESSKQLTKQGKKKGEKKEREVRVAFMTKSEIDHLEDGYRWRKYGQKAV 149

Query:   119 KDNKFPRSYYRCTHEGCNVKKQVQRLTNDEGIVVTTYEGMHNHRIE---KPTDNFEHIL 174
             K++ +PRSYYRCT + CNVKK+V+R   D  IV+TTYEG HNH I    + T   EH+L
Sbjct:   150 KNSPYPRSYYRCTTQKCNVKKRVERSFQDPSIVITTYEGKHNHPIPSTLRGTVAAEHLL 208

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:505006317 WRKY12 "WRKY DNA-binding protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 49/71 (69%), Positives = 59/71 (83%)

Query:    91 PRFAFQTRSQVDILDDGYRWRKYGQKAVKDNKFPRSYYRCTHEGCNVKKQVQRLTNDEGI 150
             PRF FQT+S VD+LDDGY+WRKYGQK VK++  PRSYYRCTH  C VKK+V+RL+ D  +
Sbjct:   131 PRFCFQTKSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRM 190

Query:   151 VVTTYEGMHNH 161
             V+TTYEG HNH
Sbjct:   191 VITTYEGRHNH 201

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

TAIR|locus:2007081 WRKY57 "AT1G69310" [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 49/72 (68%), Positives = 60/72 (83%)

Query:    91 PRFAFQTRSQVDILDDGYRWRKYGQKAVKDNKFPRSYYRCTHEGCNVKKQVQRLTNDEGI 150
             PRFAF T+S VD L+DGYRWRKYGQKAVK++ FPRSYYRCT+  C VKK+V+R ++D  I
Sbjct:   133 PRFAFMTKSDVDNLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSRCTVKKRVERSSDDPSI 192

Query:   151 VVTTYEGMHNHR 162
             V+TTYEG H H+
Sbjct:   193 VITTYEGQHCHQ 204

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

TAIR|locus:2141872 WRKY28 "WRKY DNA-binding protein 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 50/78 (64%), Positives = 63/78 (80%)

Query:    91 PRFAFQTRSQVDILDDGYRWRKYGQKAVKDNKFPRSYYRCTHEGCNVKKQVQRLTNDEGI 150
             PR +F T+S+VD L+DGYRWRKYGQKAVK++ +PRSYYRCT + CNVKK+V+R   D  +
Sbjct:   158 PRVSFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDPTV 217

Query:   151 VVTTYEGMHNHRIEKPTD 168
             V+TTYEG HNH I  PT+
Sbjct:   218 VITTYEGQHNHPI--PTN 233

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FYA2	WRK75_ARATH	No assigned EC number	0.6064	0.7158	0.9034	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00037881001 SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (182 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	183
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	2e-34
smart00774	59	smart00774, WRKY, DNA binding domain	3e-34

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  115 bits (289), Expect = 2e-34
 Identities = 41/58 (70%), Positives = 45/58 (77%)

Query: 104 LDDGYRWRKYGQKAVKDNKFPRSYYRCTHEGCNVKKQVQRLTNDEGIVVTTYEGMHNH 161
           LDDGY WRKYGQK VK + FPRSYYRCT  GC VKKQV+R ++D  IV  TYEG HNH
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCTSPGCPVKKQVERSSDDPQIVEITYEGEHNH 58

Length = 60

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  114 bits (289), Expect = 3e-34
 Identities = 37/59 (62%), Positives = 44/59 (74%), Gaps = 1/59 (1%)

Query: 104 LDDGYRWRKYGQKAVKDNKFPRSYYRCTHE-GCNVKKQVQRLTNDEGIVVTTYEGMHNH 161
           LDDGY+WRKYGQK +K + +PRSYYRCT+  GC  KKQVQR  +D  +V  TYEG H H
Sbjct: 1   LDDGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	183
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	100.0
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.97
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	94.99
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	93.31

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=100.00  E-value=3.6e-34  Score=200.43  Aligned_cols=59  Identities=69%  Similarity=1.281  Sum_probs=52.6

Q ss_pred             CCCCchhhccCceeccCCCCCCceeecccCCCCcccceeeecCCCCEEEEEEeccCCCC
Q 030050          104 LDDGYRWRKYGQKAVKDNKFPRSYYRCTHEGCNVKKQVQRLTNDEGIVVTTYEGMHNHR  162 (183)
Q Consensus       104 ~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~gC~akKqVqr~~~D~~~~~ttY~G~HnHp  162 (183)
                      ++|||+|||||||.|+|+++||+||||++.+|+|+|+|||+.+|+.+++|||+|+|||+
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~   59 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHP   59 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred             CCCCCchhhccCcccCCCceeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence            58999999999999999999999999999999999999999999999999999999997

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=99.97  E-value=1e-32  Score=193.27  Aligned_cols=58  Identities=66%  Similarity=1.213  Sum_probs=56.5

Q ss_pred             CCCCchhhccCceeccCCCCCCceeeccc-CCCCcccceeeecCCCCEEEEEEeccCCC
Q 030050          104 LDDGYRWRKYGQKAVKDNKFPRSYYRCTH-EGCNVKKQVQRLTNDEGIVVTTYEGMHNH  161 (183)
Q Consensus       104 ~dDGy~WRKYGQK~ikgs~~pRsYYrCt~-~gC~akKqVqr~~~D~~~~~ttY~G~HnH  161 (183)
                      ++|||.|||||||.|+|+++||+||||++ ++|+|+|+|||+++|+.+++|||+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            47999999999999999999999999999 99999999999989999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=94.99  E-value=0.024  Score=40.46  Aligned_cols=31  Identities=32%  Similarity=0.491  Sum_probs=26.8

Q ss_pred             CCCCcccceeeecCCCCEEEEEEeccCCCCCC
Q 030050          133 EGCNVKKQVQRLTNDEGIVVTTYEGMHNHRIE  164 (183)
Q Consensus       133 ~gC~akKqVqr~~~D~~~~~ttY~G~HnHp~~  164 (183)
                      .||+|+=.|.+.. |....++.+..+|||+..
T Consensus        60 tgC~a~i~v~~~~-~~~w~v~~~~~~HNH~L~   90 (91)
T PF03101_consen   60 TGCKARINVKRRK-DGKWRVTSFVLEHNHPLC   90 (91)
T ss_pred             cCCCEEEEEEEcc-CCEEEEEECcCCcCCCCC
Confidence            6999999998755 787888999999999964

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.31  E-value=0.058  Score=35.32  Aligned_cols=49  Identities=33%  Similarity=0.678  Sum_probs=24.8

Q ss_pred             cCCCCchhhccCceeccCCCCCCceeecccC---CCCcccceeeecCCCCEEEEEEeccCCC
Q 030050          103 ILDDGYRWRKYGQKAVKDNKFPRSYYRCTHE---GCNVKKQVQRLTNDEGIVVTTYEGMHNH  161 (183)
Q Consensus       103 ~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~---gC~akKqVqr~~~D~~~~~ttY~G~HnH  161 (183)
                      ++-|||.-.+....      ....|++|+..   +|+|+=.+.  .++. .+. ...++|||
T Consensus        11 L~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~~-~~~-~~~~~HnH   62 (62)
T PF04500_consen   11 LVYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGDG-RVV-RTNGEHNH   62 (62)
T ss_dssp             EEETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----TT-EEE-E-S---SS
T ss_pred             EEECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCCC-EEE-ECCCccCC
Confidence            56689877664444      34689999973   899998876  2333 333 34499998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	183
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		6e-23
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		5e-20

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score =  103 bits (257), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 45/70 (64%), Positives = 52/70 (74%)
Query: 94  AFQTRSQVDILDDGYRWRKYGQKAVKDNKFPRSYYRCTHEGCNVKKQVQRLTNDEGIVVT 153
             QT S+VD+LDDGYRWRKYGQK VK N +PRSYY+CT  GC V+K V+R   D   VVT
Sbjct: 7   GVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVT 66
Query: 154 TYEGMHNHRI 163
           TYEG HNH +
Sbjct: 67  TYEGKHNHDL 76

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 39/70 (55%), Positives = 54/70 (77%)
Query: 92  RFAFQTRSQVDILDDGYRWRKYGQKAVKDNKFPRSYYRCTHEGCNVKKQVQRLTNDEGIV 151
           R    T++  DI++DGYRWRKYGQK+VK + +PRSYYRC+  GC VKK V+R ++D  ++
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61
Query: 152 VTTYEGMHNH 161
           +TTYEG H+H
Sbjct: 62  ITTYEGKHDH 71

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	183
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	7e-45
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	3e-42

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  142 bits (359), Expect = 7e-45
 Identities = 45/73 (61%), Positives = 51/73 (69%)

Query: 89  KKPRFAFQTRSQVDILDDGYRWRKYGQKAVKDNKFPRSYYRCTHEGCNVKKQVQRLTNDE 148
                  QT S+VD+LDDGYRWRKYGQK VK N +PRSYY+CT  GC V+K V+R   D 
Sbjct: 2   SSGSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDP 61

Query: 149 GIVVTTYEGMHNH 161
             VVTTYEG HNH
Sbjct: 62  KAVVTTYEGKHNH 74

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  135 bits (341), Expect = 3e-42
 Identities = 39/70 (55%), Positives = 54/70 (77%)

Query: 92  RFAFQTRSQVDILDDGYRWRKYGQKAVKDNKFPRSYYRCTHEGCNVKKQVQRLTNDEGIV 151
           R    T++  DI++DGYRWRKYGQK+VK + +PRSYYRC+  GC VKK V+R ++D  ++
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61

Query: 152 VTTYEGMHNH 161
           +TTYEG H+H
Sbjct: 62  ITTYEGKHDH 71

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	183
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	100.0
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	100.0
2rpr_A	87	Flywch-type zinc finger-containing protein 1; flyw	84.84

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=100.00  E-value=1.2e-37  Score=226.87  Aligned_cols=75  Identities=52%  Similarity=1.054  Sum_probs=72.2

Q ss_pred             ceeeEeeccccccCCCCchhhccCceeccCCCCCCceeecccCCCCcccceeeecCCCCEEEEEEeccCCCCCCC
Q 030050           91 PRFAFQTRSQVDILDDGYRWRKYGQKAVKDNKFPRSYYRCTHEGCNVKKQVQRLTNDEGIVVTTYEGMHNHRIEK  165 (183)
Q Consensus        91 ~r~~~qt~s~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~gC~akKqVqr~~~D~~~~~ttY~G~HnHp~~~  165 (183)
                      .|++|+|.+++++++|||+|||||||.|||+++||+||||++++|+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus         1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A            1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            478999999999999999999999999999999999999999999999999999999999999999999999774

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=100.00  E-value=1.1e-37  Score=228.09  Aligned_cols=74  Identities=61%  Similarity=1.075  Sum_probs=68.8

Q ss_pred             ceeeEeeccccccCCCCchhhccCceeccCCCCCCceeecccCCCCcccceeeecCCCCEEEEEEeccCCCCCC
Q 030050           91 PRFAFQTRSQVDILDDGYRWRKYGQKAVKDNKFPRSYYRCTHEGCNVKKQVQRLTNDEGIVVTTYEGMHNHRIE  164 (183)
Q Consensus        91 ~r~~~qt~s~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~gC~akKqVqr~~~D~~~~~ttY~G~HnHp~~  164 (183)
                      .+++|+|++++++++|||+|||||||.|||+++||+||||++++|+|+|+|||+.+|+.+++|||+|+|||+.|
T Consensus         4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p   77 (78)
T 1wj2_A            4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   77 (78)
T ss_dssp             ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999976

>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}

Probab=84.84  E-value=0.82  Score=32.11  Aligned_cols=53  Identities=19%  Similarity=0.337  Sum_probs=33.5

Q ss_pred             ccccccCCCCchhhccCceeccCCCCCCceeeccc---CCCCcccceeeecCCCCEEEEEEeccCCCCC
Q 030050           98 RSQVDILDDGYRWRKYGQKAVKDNKFPRSYYRCTH---EGCNVKKQVQRLTNDEGIVVTTYEGMHNHRI  163 (183)
Q Consensus        98 ~s~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~---~gC~akKqVqr~~~D~~~~~ttY~G~HnHp~  163 (183)
                      +....++-|||.-.+--  . .   ..+.|.+|+.   .+|.|+=....   +.  +  .-.+.||||.
T Consensus        18 rG~~~Lv~~Gy~Y~~~~--~-~---~~~~yWrC~~~~~~kCrARi~T~~---~~--~--~~~~~HnH~p   73 (87)
T 2rpr_A           18 LGGRFLVHESFLYRKEK--A-A---GEKVYWMCRDQARLGCRSRAITQG---HR--I--MVMRSHCHQP   73 (87)
T ss_dssp             TTEEEEEETTEEEEEEE--E-C---SSCEEEEEGGGTTSCCCCEEEEET---TE--E--EECSCCSSCC
T ss_pred             CCCcEEEECCEEEEeee--c-C---CCcEEEEecCCCCCCCCEEEEEcC---CC--E--ECCCCcCCCC
Confidence            33445677999776521  1 1   2368999987   58999855432   21  2  2468899974

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	183
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	8e-33

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  110 bits (276), Expect = 8e-33
 Identities = 45/66 (68%), Positives = 51/66 (77%)

Query: 96  QTRSQVDILDDGYRWRKYGQKAVKDNKFPRSYYRCTHEGCNVKKQVQRLTNDEGIVVTTY 155
           QT S+VD+LDDGYRWRKYGQK VK N +PRSYY+CT  GC V+K V+R   D   VVTTY
Sbjct: 2   QTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTY 61

Query: 156 EGMHNH 161
           EG HNH
Sbjct: 62  EGKHNH 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	183
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	100.0

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.2e-37  Score=222.60  Aligned_cols=70  Identities=64%  Similarity=1.156  Sum_probs=67.2

Q ss_pred             EeeccccccCCCCchhhccCceeccCCCCCCceeecccCCCCcccceeeecCCCCEEEEEEeccCCCCCC
Q 030050           95 FQTRSQVDILDDGYRWRKYGQKAVKDNKFPRSYYRCTHEGCNVKKQVQRLTNDEGIVVTTYEGMHNHRIE  164 (183)
Q Consensus        95 ~qt~s~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~gC~akKqVqr~~~D~~~~~ttY~G~HnHp~~  164 (183)
                      ++|.+++++++|||+|||||||.|+|+++||+||||++++|+|+|+|||+++|+.+++|||+|+|||+.|
T Consensus         1 v~t~~~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~P   70 (71)
T d1wj2a_           1 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   70 (71)
T ss_dssp             CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             CccccccccCCCCcEecccCceeccCCCCceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCC
Confidence            4678899999999999999999999999999999999999999999999999999999999999999876