Citrus Sinensis ID: 030052

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180---
Protein Sequence
MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRISSSRHLLKHFLLQCISYN
Secondary Structure (PSIPRED)
ccEEEEEEccccEEEEEEEcccEEEEEccccHHHHHHHHHHHcccccEEEEEEcccEEEEEEEEEcccEEEEcccccHHHHHHHHHHcccccEEEEEccccccccEEEEEEccEEEEcccccHHHHHHHHHHHccEEEEEEEccccccccEEEEEcccEEEEccccHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cEEEEcEccEccHHHHEEEccccEEEEccccHHHHHHHHHHHcccccEEEEcEccEccHHHHcEEcccEEEEEccccHHHHHHHHHHcccccEEEEEccccccHHHHEEEcccEEEEcccccHHHHHHHHHHHccEEEEccEccEccHHHcEEEccccEEEcccccHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADvipvvktsiggnriigrlcvgnknglllphtttDQELQHLRNSLPDQVVVQRIEERLSALgnciacndhvalahtdldrETEEIIADVLGVEVFRQTIAGNILVGSycsfsnrgglvrhRISSSRHLLKHFLLQCISYN
Flexible Loop (DISEMBL)
MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRISSSRHLLKHFLLQCISYN
Low Complexity Region (SEG)
MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRISSSRHLLKHFLLQCISYN
Disordered region (IsUnstruct)
*****MFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRISSSRHLLKHFLLQCIS**
Disordered Region (DISOPRED)
*ATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRISSSRHLLKHFLLQCISYN
Disordered Region (DISEMBL)
********NSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRISSSRHLLKHFLLQCISYN
Disordered Region (DISPRO)
MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRISSSRHLLKHFLLQCISYN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRISSSRHLLKHFLLQCISYN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	183	2.2.26 [Sep-21-2011]
Q9M060	245	Eukaryotic translation in	yes	no	0.885	0.661	0.873	3e-83
O81920	193	Eukaryotic translation in	N/A	no	0.890	0.844	0.819	8e-75
Q12522	245	Eukaryotic translation in	yes	no	0.945	0.706	0.707	3e-70
A4RSQ6	245	Eukaryotic translation in	yes	no	0.874	0.653	0.710	3e-69
Q59L13	245	Eukaryotic translation in	N/A	no	0.885	0.661	0.728	7e-69
O55135	245	Eukaryotic translation in	yes	no	0.907	0.677	0.722	8e-68
Q3KRD8	245	Eukaryotic translation in	yes	no	0.907	0.677	0.716	3e-67
Q7S2W6	246	Eukaryotic translation in	N/A	no	0.907	0.674	0.728	3e-67
D1ZG64	246	Eukaryotic translation in	N/A	no	0.907	0.674	0.728	3e-67
P56537	245	Eukaryotic translation in	yes	no	0.907	0.677	0.710	5e-67

>sp|Q9M060|IF62_ARATH Eukaryotic translation initiation factor 6-2 OS=Arabidopsis thaliana GN=EIF6-2 PE=2 SV=1

 Score =  307 bits (786), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 145/166 (87%), Positives = 157/166 (94%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MATRL FEN+CEVGVFSKLTNA+CLVAIGGSE+FYS FE+ELADVIP+VKTSIGG RIIG
Sbjct: 1   MATRLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSAFESELADVIPIVKTSIGGTRIIG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           RLC GNKNGLL+PHTTTDQELQHLRNSLPDQVVVQRI+ERLSALGNCIACND+VALAHTD
Sbjct: 61  RLCAGNKNGLLVPHTTTDQELQHLRNSLPDQVVVQRIDERLSALGNCIACNDYVALAHTD 120

Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRIS 166
           LD+ETEEIIADVLGVEVFRQTIAGNILVGSYC+ SN+GG+V    S
Sbjct: 121 LDKETEEIIADVLGVEVFRQTIAGNILVGSYCALSNKGGMVHPHTS 166

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.
Arabidopsis thaliana (taxid: 3702)

>sp|O81920|IF6_BETVU Eukaryotic translation initiation factor 6 (Fragment) OS=Beta vulgaris PE=2 SV=1

 Score =  279 bits (713), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 136/166 (81%), Positives = 147/166 (88%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MATRL FEN+CEVGVFSKLTNA+CLVAIGGSE+FYSTFE ELAD IPVVKTSI G RIIG
Sbjct: 1   MATRLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSTFETELADYIPVVKTSIAGTRIIG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
                NKNGLL+PHTTTDQELQHLRN LPD VVVQRIEE+LSALGNCIACND+VAL HTD
Sbjct: 61  PNVCRNKNGLLVPHTTTDQELQHLRNCLPDSVVVQRIEEKLSALGNCIACNDYVALTHTD 120

Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRIS 166
           LD+ETEE+IADVLGVEVF QTIAGNILVGSYC+ +N+GGLV    S
Sbjct: 121 LDKETEELIADVLGVEVFGQTIAGNILVGSYCAITNKGGLVHPHTS 166

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex.

Beta vulgaris (taxid: 161934)

>sp|Q12522|IF6_YEAST Eukaryotic translation initiation factor 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TIF6 PE=1 SV=1

 Score =  263 bits (673), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 126/178 (70%), Positives = 144/178 (80%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MATR  FENS E+GVFSKLTN +CLVA+GGSE+FYS FEAEL D IP+V T+I G RIIG
Sbjct: 1   MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           R+  GN+ GLL+P  TTDQELQHLRNSLPD V +QR+EERLSALGN I CND+VAL H D
Sbjct: 61  RMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPD 120

Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRISSSRHLLKHFLLQ 178
           +DRETEE+I+DVLGVEVFRQTI+GNILVGSYCS SN+GGLV  + S         LLQ
Sbjct: 121 IDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQ 178

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export. Cytoplasmic release of TIF6 from 60S subunits and nuclear relocalization is promoted by the GTPase RIA1/EFL1 and by SDO1. Also required for pre-rRNA processing.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|A4RSQ6|IF6_OSTLU Eukaryotic translation initiation factor 6 OS=Ostreococcus lucimarinus (strain CCE9901) GN=EIF6 PE=3 SV=2

 Score =  260 bits (665), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 118/166 (71%), Positives = 144/166 (86%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MA R  FENS E+GVF+ LTNA+CL A+GGSE+FYS FEAEL++ IPV+K S+ G R++G
Sbjct: 1   MAARHQFENSNEIGVFAALTNAYCLAAVGGSENFYSVFEAELSNEIPVIKASLAGTRLVG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           RL VGNK+GLLLP + TDQE+ H+RNSLPD+V+VQR EERLSALGNC+ACNDHVAL H D
Sbjct: 61  RLSVGNKHGLLLPTSATDQEVMHIRNSLPDEVIVQRTEERLSALGNCVACNDHVALVHPD 120

Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRIS 166
           +D+ETEEIIADVLGVEVFRQ++AGN+LVGS+C FSNRGG+V  + S
Sbjct: 121 IDQETEEIIADVLGVEVFRQSVAGNVLVGSFCKFSNRGGMVHPQAS 166

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.

Ostreococcus lucimarinus (strain CCE9901) (taxid: 436017)

>sp|Q59L13|IF6_CANAL Eukaryotic translation initiation factor 6 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=TIF6 PE=3 SV=1

 Score =  259 bits (662), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 121/166 (72%), Positives = 141/166 (84%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MATR  FENS EVGVFS LTN++CLVA+GGSE+FYS FEAEL DVIP+V T+I G RI+G
Sbjct: 1   MATRTQFENSNEVGVFSNLTNSYCLVAVGGSENFYSAFEAELGDVIPIVHTTIAGTRIVG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           R+  GN+ GLL+P  TTDQEL HLRNSLPD + +QR+EERLSALGN I CND+VAL H D
Sbjct: 61  RMTSGNRRGLLVPTQTTDQELMHLRNSLPDSIKIQRVEERLSALGNVICCNDYVALVHPD 120

Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRIS 166
           ++RETEE+IADVLGVEVFRQTIAGN+LVGSYCS SN+GGLV  + S
Sbjct: 121 IERETEELIADVLGVEVFRQTIAGNVLVGSYCSLSNQGGLVHPQTS 166

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

>sp|O55135|IF6_MOUSE Eukaryotic translation initiation factor 6 OS=Mus musculus GN=Eif6 PE=1 SV=2

 Score =  256 bits (653), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 120/166 (72%), Positives = 140/166 (84%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MA R  FEN+CEVG F+KLTNA+CLVAIGGSE+FYS FE EL+D IPVV  SI G RIIG
Sbjct: 1   MAVRASFENNCEVGCFAKLTNAYCLVAIGGSENFYSVFEGELSDAIPVVHASIAGCRIIG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           R+CVGN++GLL+P+ TTDQELQH+RNSLPD V ++R+EERLSALGN   CND+VAL H D
Sbjct: 61  RMCVGNRHGLLVPNNTTDQELQHIRNSLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 120

Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRIS 166
           LDRETEEI+ADVL VEVFRQT+A  +LVGSYC FSN+GGLV  + S
Sbjct: 121 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTS 166

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May behave as a stimulatory translation initiation factor downstream insulin/growth factors. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export. Cytoplasmic release of TIF6 from 60S subunits and nuclear relocalization is promoted by a RACK1 (GNB2L1)-dependent protein kinase C activity.

Mus musculus (taxid: 10090)

>sp|Q3KRD8|IF6_RAT Eukaryotic translation initiation factor 6 OS=Rattus norvegicus GN=Eif6 PE=2 SV=1

 Score =  254 bits (648), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 119/166 (71%), Positives = 139/166 (83%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MA R  FEN+CEVG F+KLTN +CLVAIGGSE+FYS FE EL+D IPVV  SI G RIIG
Sbjct: 1   MAVRASFENNCEVGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           R+CVGN++GLL+P+ TTDQELQH+RNSLPD V ++R+EERLSALGN   CND+VAL H D
Sbjct: 61  RMCVGNRHGLLVPNNTTDQELQHIRNSLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 120

Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRIS 166
           LDRETEEI+ADVL VEVFRQT+A  +LVGSYC FSN+GGLV  + S
Sbjct: 121 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTS 166

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May behave as a stimulatory translation initiation factor downstream insulin/growth factors. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export. Cytoplasmic release of TIF6 from 60S subunits and nuclear relocalization is promoted by a RACK1 (GNB2L1)-dependent protein kinase C activity.

Rattus norvegicus (taxid: 10116)

>sp|Q7S2W6|IF6_NEUCR Eukaryotic translation initiation factor 6 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=tif-6 PE=3 SV=1

 Score =  254 bits (648), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 121/166 (72%), Positives = 137/166 (82%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MA R  FENS EVGVFS LTN++ LVA+G SE+FYS FEAEL DVIP+ +T+I G RIIG
Sbjct: 1   MAVRAQFENSNEVGVFSTLTNSYALVAVGASENFYSVFEAELQDVIPICRTTIAGTRIIG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           RL  GN+ GLL+P TT+DQELQHLRNSLPD V +QRIEERLSALGN I CNDH AL H D
Sbjct: 61  RLTAGNRKGLLVPTTTSDQELQHLRNSLPDDVRIQRIEERLSALGNVIVCNDHTALIHPD 120

Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRIS 166
           L+RETEEIIADVLGVEVFRQTIA N+LVGSY + SN+GGLV  + S
Sbjct: 121 LERETEEIIADVLGVEVFRQTIADNVLVGSYMALSNQGGLVHPKTS 166

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|D1ZG64|IF6_SORMK Eukaryotic translation initiation factor 6 OS=Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell) GN=TIF6 PE=3 SV=2

 Score =  253 bits (647), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 121/166 (72%), Positives = 137/166 (82%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MA R  FENS EVGVFS LTN++ LVA+G SE+FYS FEAEL DVIP+ +T+I G RIIG
Sbjct: 1   MAVRAQFENSNEVGVFSTLTNSYALVAVGASENFYSVFEAELQDVIPICRTTIAGTRIIG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           RL  GN+ GLL+P +T+DQELQHLRNSLPD V +QRIEERLSALGN I CNDH AL H D
Sbjct: 61  RLTAGNRKGLLVPTSTSDQELQHLRNSLPDDVRIQRIEERLSALGNVIVCNDHTALIHPD 120

Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRIS 166
           L+RETEEIIADVLGVEVFRQTIA N+LVGSY S SN+GGLV  + S
Sbjct: 121 LERETEEIIADVLGVEVFRQTIADNVLVGSYMSLSNQGGLVHPKTS 166

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export.

Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell) (taxid: 771870)

>sp|P56537|IF6_HUMAN Eukaryotic translation initiation factor 6 OS=Homo sapiens GN=EIF6 PE=1 SV=1

 Score =  253 bits (646), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 118/166 (71%), Positives = 139/166 (83%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MA R  FEN+CE+G F+KLTN +CLVAIGGSE+FYS FE EL+D IPVV  SI G RIIG
Sbjct: 1   MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           R+CVGN++GLL+P+ TTDQELQH+RNSLPD V ++R+EERLSALGN   CND+VAL H D
Sbjct: 61  RMCVGNRHGLLVPNNTTDQELQHIRNSLPDTVQIRRVEERLSALGNVTTCNDYVALVHPD 120

Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRIS 166
           LDRETEEI+ADVL VEVFRQT+A  +LVGSYC FSN+GGLV  + S
Sbjct: 121 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTS 166

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May behave as a stimulatory translation initiation factor downstream insulin/growth factors. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export. Cytoplasmic release of TIF6 from 60S subunits and nuclear relocalization is promoted by a RACK1 (GNB2L1)-dependent protein kinase C activity.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
225438420	245	PREDICTED: eukaryotic translation initia	0.907	0.677	0.909	4e-84
118480999	245	unknown [Populus trichocarpa]	0.885	0.661	0.909	1e-83
356530991	245	PREDICTED: eukaryotic translation initia	0.907	0.677	0.909	2e-83
255583438	245	translation initiation factor, putative	0.907	0.677	0.903	3e-83
356559971	245	PREDICTED: eukaryotic translation initia	0.907	0.677	0.909	4e-83
255646745	245	unknown [Glycine max]	0.961	0.718	0.870	9e-83
356576589	245	PREDICTED: eukaryotic translation initia	0.907	0.677	0.897	1e-82
297816866	245	EMB1624 [Arabidopsis lyrata subsp. lyrat	0.907	0.677	0.885	1e-82
224094250	245	predicted protein [Populus trichocarpa]	0.907	0.677	0.885	1e-82
224109868	245	predicted protein [Populus trichocarpa]	0.885	0.661	0.897	7e-82

>gi|225438420|ref|XP_002276166.1| PREDICTED: eukaryotic translation initiation factor 6-2 isoform 1 [Vitis vinifera] gi|147840016|emb|CAN77181.1| hypothetical protein VITISV_038707 [Vitis vinifera] gi|296082575|emb|CBI21580.3| unnamed protein product [Vitis vinifera]

 Score =  315 bits (808), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 151/166 (90%), Positives = 157/166 (94%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MATRL FENSCEVGVFSKLTNA+CLVAIGGSESFYS FE+ELADVIPVVKTSIGG RIIG
Sbjct: 1   MATRLQFENSCEVGVFSKLTNAYCLVAIGGSESFYSVFESELADVIPVVKTSIGGTRIIG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           RLC GNK GLLLPHTTTDQELQHLRNSLPDQVVVQRIEE+LSALGNCIACNDHVALAHTD
Sbjct: 61  RLCAGNKKGLLLPHTTTDQELQHLRNSLPDQVVVQRIEEKLSALGNCIACNDHVALAHTD 120

Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRIS 166
           LDRETEE++ADVLGVEVFRQTIAGNILVGSYC+FSNRGGLV    S
Sbjct: 121 LDRETEEMVADVLGVEVFRQTIAGNILVGSYCTFSNRGGLVHPHTS 166

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118480999|gb|ABK92453.1| unknown [Populus trichocarpa]

 Score =  314 bits (804), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 151/166 (90%), Positives = 158/166 (95%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MA+RL FEN+CEVGVFSKLTNA+CLVAIGGSESFYSTFEAELADVIPVVKTSI G RIIG
Sbjct: 1   MASRLQFENNCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIAGTRIIG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           RLC GNKNGLL+PHTTTDQELQHLRNSLPDQVVVQRI+E+LSALGNCIACNDHVALAHTD
Sbjct: 61  RLCAGNKNGLLVPHTTTDQELQHLRNSLPDQVVVQRIDEKLSALGNCIACNDHVALAHTD 120

Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRIS 166
           LDRETEEIIADVLGVEVFRQTIAGNILVGSYC+FSNRGGLV    S
Sbjct: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCAFSNRGGLVHPHTS 166

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530991|ref|XP_003534062.1| PREDICTED: eukaryotic translation initiation factor 6-2-like isoform 1 [Glycine max] gi|356530993|ref|XP_003534063.1| PREDICTED: eukaryotic translation initiation factor 6-2-like isoform 2 [Glycine max]

 Score =  313 bits (801), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 151/166 (90%), Positives = 156/166 (93%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MATRL FEN+CEVGVFSKLTNA+CLVAIGGSESFYS FEAELADVIPVVKTSIGG RIIG
Sbjct: 1   MATRLQFENNCEVGVFSKLTNAYCLVAIGGSESFYSVFEAELADVIPVVKTSIGGTRIIG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           RLC GNKNGLLLPHTTTDQELQ LRNSLPDQVVVQRI+ERLSALGNCIACNDHVAL HTD
Sbjct: 61  RLCAGNKNGLLLPHTTTDQELQQLRNSLPDQVVVQRIDERLSALGNCIACNDHVALTHTD 120

Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRIS 166
           LDRETEE+IADVLGVEVFRQTIAGNILVGSYC+FSNRGGLV    S
Sbjct: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCAFSNRGGLVHPHTS 166

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583438|ref|XP_002532478.1| translation initiation factor, putative [Ricinus communis] gi|223527803|gb|EEF29902.1| translation initiation factor, putative [Ricinus communis]

 Score =  312 bits (800), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 150/166 (90%), Positives = 155/166 (93%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MATRLMFENSCEVGVFSKLTNA+CLVAIGGSESFYS FE+ELADVIPVVKTSI G RIIG
Sbjct: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSAFESELADVIPVVKTSIAGTRIIG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           RLC GNKNGLLLPHTTTDQELQHLRNSLPD VVVQRIEERLSALGNCIACNDHVAL HTD
Sbjct: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDNVVVQRIEERLSALGNCIACNDHVALTHTD 120

Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRIS 166
           LD+ETEE+IADVLGVEVFRQTIAGNILVGSYC+ SNRGGLV    S
Sbjct: 121 LDKETEEMIADVLGVEVFRQTIAGNILVGSYCALSNRGGLVHPHTS 166

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559971|ref|XP_003548269.1| PREDICTED: eukaryotic translation initiation factor 6-2-like isoform 1 [Glycine max] gi|356559973|ref|XP_003548270.1| PREDICTED: eukaryotic translation initiation factor 6-2-like isoform 2 [Glycine max]

 Score =  312 bits (799), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 151/166 (90%), Positives = 156/166 (93%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MATRL FEN+CEVGVFSKLTNA+CLVAIGGSESFYS FEAELA VIPVVKTSIGG RIIG
Sbjct: 1   MATRLQFENNCEVGVFSKLTNAYCLVAIGGSESFYSVFEAELAGVIPVVKTSIGGTRIIG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           RLC GNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRI+ERLSALGNCIACNDHVAL HTD
Sbjct: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIDERLSALGNCIACNDHVALTHTD 120

Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRIS 166
           LDRETEE+IADVLGVEVFRQTIAGNILVGSYC+FSNRGGLV    S
Sbjct: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCAFSNRGGLVHPHTS 166

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646745|gb|ACU23846.1| unknown [Glycine max]

 Score =  311 bits (796), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 154/177 (87%), Positives = 161/177 (90%), Gaps = 1/177 (0%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MATRL FEN+CEVGVFSKLTN +CLVAIGGSESFYS FEAELADVIPVVKTSIGG RIIG
Sbjct: 1   MATRLQFENNCEVGVFSKLTNTYCLVAIGGSESFYSVFEAELADVIPVVKTSIGGTRIIG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           RLC GNKNGLLLPHTTTDQELQ LRNSLPDQVVVQRI+ERLSALGNCIACNDHVAL HTD
Sbjct: 61  RLCAGNKNGLLLPHTTTDQELQQLRNSLPDQVVVQRIDERLSALGNCIACNDHVALTHTD 120

Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRISSSRHLLKHFLL 177
           LDRETEE+IADVLGVEVFRQTIAGNILVGSYC+FSNRGGLV H  +S   L + F L
Sbjct: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCAFSNRGGLV-HPHTSIEDLDELFTL 176

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576589|ref|XP_003556413.1| PREDICTED: eukaryotic translation initiation factor 6-2-like [Glycine max]

 Score =  311 bits (796), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 149/166 (89%), Positives = 156/166 (93%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MATRL FEN+CEVGVFSKLTNA+CLVAIGGSE+FYS FEAELADVIPVVKTSIGG RI+G
Sbjct: 1   MATRLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELADVIPVVKTSIGGTRIVG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           RLCVGNKNGLLLPHT TDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVAL HTD
Sbjct: 61  RLCVGNKNGLLLPHTITDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120

Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRIS 166
           LD+ETEE+IADVLGVEVFRQT+AGNILVGSYC FSNRGGLV    S
Sbjct: 121 LDKETEEMIADVLGVEVFRQTVAGNILVGSYCVFSNRGGLVHPHTS 166

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816866|ref|XP_002876316.1| EMB1624 [Arabidopsis lyrata subsp. lyrata] gi|297322154|gb|EFH52575.1| EMB1624 [Arabidopsis lyrata subsp. lyrata]

 Score =  310 bits (795), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 147/166 (88%), Positives = 157/166 (94%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MATRL FEN+CEVGVFSKLTNA+CLVAIGGSE+FYS FE+ELADVIP+VKTSIGG RIIG
Sbjct: 1   MATRLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSAFESELADVIPIVKTSIGGTRIIG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           RLC GNKNGLL+PHTTTDQELQHLRNSLPDQVVVQRI+ERLSALGNCIACNDHVALAHTD
Sbjct: 61  RLCAGNKNGLLVPHTTTDQELQHLRNSLPDQVVVQRIDERLSALGNCIACNDHVALAHTD 120

Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRIS 166
           LD+ETEEII DVLGVEVFRQTIAGNILVGSYC+ SNRGG+V  R S
Sbjct: 121 LDKETEEIITDVLGVEVFRQTIAGNILVGSYCALSNRGGMVHPRTS 166

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094250|ref|XP_002310109.1| predicted protein [Populus trichocarpa] gi|118489313|gb|ABK96461.1| unknown [Populus trichocarpa x Populus deltoides] gi|222853012|gb|EEE90559.1| predicted protein [Populus trichocarpa]

 Score =  310 bits (794), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 147/166 (88%), Positives = 158/166 (95%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MATRLMFENSCEVGVFSKLTNA+CLVAIGGSE+FYSTFEAEL DVIPVVKTSIGG+RIIG
Sbjct: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSENFYSTFEAELGDVIPVVKTSIGGSRIIG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           RLC GNKNG+LLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGN +ACNDHVAL HTD
Sbjct: 61  RLCAGNKNGILLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNGVACNDHVALTHTD 120

Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRIS 166
           LD+ETEE+I+DVLGVEVFRQT+AGN+LVGSYC+FSNRGGLV    S
Sbjct: 121 LDKETEEMISDVLGVEVFRQTVAGNVLVGSYCAFSNRGGLVHPHTS 166

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109868|ref|XP_002315337.1| predicted protein [Populus trichocarpa] gi|222864377|gb|EEF01508.1| predicted protein [Populus trichocarpa]

 Score =  308 bits (788), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 149/166 (89%), Positives = 156/166 (93%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MA+RL FEN+CEVGVFSKLTNA+CLVAIGGSESFYSTFEAELADVIPVVKTSI G RIIG
Sbjct: 1   MASRLQFENNCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIAGTRIIG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           RLC GNKNGLL+PHTTTDQ L HLRNSLPDQVVVQRI+E+LSALGNCIACNDHVALAHTD
Sbjct: 61  RLCAGNKNGLLVPHTTTDQGLGHLRNSLPDQVVVQRIDEKLSALGNCIACNDHVALAHTD 120

Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRIS 166
           LDRETEEIIADVLGVEVFRQTIAGNILVGSYC+FSNRGGLV    S
Sbjct: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCAFSNRGGLVHPHTS 166

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
TAIR|locus:2078921	245	eIF6A "AT3G55620" [Arabidopsis	0.907	0.677	0.873	1.7e-75
SGD|S000006220	245	TIF6 "Constituent of 66S pre-r	0.907	0.677	0.740	1.6e-63
CGD|CAL0001603	245	orf19.1815 [Candida albicans (	0.907	0.677	0.728	8.8e-63
MGI|MGI:1196288	245	Eif6 "eukaryotic translation i	0.907	0.677	0.722	3e-62
RGD|1305373	245	Eif6 "eukaryotic translation i	0.907	0.677	0.716	7.9e-62
UNIPROTKB|P56537	245	EIF6 "Eukaryotic translation i	0.907	0.677	0.710	1.3e-61
UNIPROTKB|Q9TU47	245	EIF6 "Eukaryotic translation i	0.907	0.677	0.704	7.1e-61
POMBASE|SPCC1919.09	244	tif6 "translation initiation f	0.907	0.680	0.710	9e-61
UNIPROTKB|E2R1S5	242	EIF6 "Eukaryotic translation i	0.907	0.685	0.704	1.9e-60
FB|FBgn0034915	245	eIF6 "eIF6" [Drosophila melano	0.907	0.677	0.716	5e-60

TAIR|locus:2078921 eIF6A "AT3G55620" [Arabidopsis thaliana (taxid:3702)]

 Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
 Identities = 145/166 (87%), Positives = 157/166 (94%)

Query:     1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
             MATRL FEN+CEVGVFSKLTNA+CLVAIGGSE+FYS FE+ELADVIP+VKTSIGG RIIG
Sbjct:     1 MATRLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSAFESELADVIPIVKTSIGGTRIIG 60

Query:    61 RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
             RLC GNKNGLL+PHTTTDQELQHLRNSLPDQVVVQRI+ERLSALGNCIACND+VALAHTD
Sbjct:    61 RLCAGNKNGLLVPHTTTDQELQHLRNSLPDQVVVQRIDERLSALGNCIACNDYVALAHTD 120

Query:   121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRIS 166
             LD+ETEEIIADVLGVEVFRQTIAGNILVGSYC+ SN+GG+V    S
Sbjct:   121 LDKETEEIIADVLGVEVFRQTIAGNILVGSYCALSNKGGMVHPHTS 166

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0071215 "cellular response to abscisic acid stimulus" evidence=IEP

SGD|S000006220 TIF6 "Constituent of 66S pre-ribosomal particles" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
 Identities = 123/166 (74%), Positives = 141/166 (84%)

Query:     1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
             MATR  FENS E+GVFSKLTN +CLVA+GGSE+FYS FEAEL D IP+V T+I G RIIG
Sbjct:     1 MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIG 60

Query:    61 RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
             R+  GN+ GLL+P  TTDQELQHLRNSLPD V +QR+EERLSALGN I CND+VAL H D
Sbjct:    61 RMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPD 120

Query:   121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRIS 166
             +DRETEE+I+DVLGVEVFRQTI+GNILVGSYCS SN+GGLV  + S
Sbjct:   121 IDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTS 166

GO:0043023 "ribosomal large subunit binding" evidence=IEA;IDA

GO:0043022 "ribosome binding" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA;IMP;IPI

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0030687 "preribosome, large subunit precursor" evidence=IDA

GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

GO:0000466 "maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

GO:0005730 "nucleolus" evidence=IEA;IDA

GO:0000054 "ribosomal subunit export from nucleus" evidence=IEA;IGI

GO:0006364 "rRNA processing" evidence=IGI

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0006412 "translation" evidence=IEA

CGD|CAL0001603 orf19.1815 [Candida albicans (taxid:5476)]

 Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
 Identities = 121/166 (72%), Positives = 141/166 (84%)

Query:     1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
             MATR  FENS EVGVFS LTN++CLVA+GGSE+FYS FEAEL DVIP+V T+I G RI+G
Sbjct:     1 MATRTQFENSNEVGVFSNLTNSYCLVAVGGSENFYSAFEAELGDVIPIVHTTIAGTRIVG 60

Query:    61 RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
             R+  GN+ GLL+P  TTDQEL HLRNSLPD + +QR+EERLSALGN I CND+VAL H D
Sbjct:    61 RMTSGNRRGLLVPTQTTDQELMHLRNSLPDSIKIQRVEERLSALGNVICCNDYVALVHPD 120

Query:   121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRIS 166
             ++RETEE+IADVLGVEVFRQTIAGN+LVGSYCS SN+GGLV  + S
Sbjct:   121 IERETEELIADVLGVEVFRQTIAGNVLVGSYCSLSNQGGLVHPQTS 166

GO:0043023 "ribosomal large subunit binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0030687 "preribosome, large subunit precursor" evidence=IEA

GO:0000466 "maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0000054 "ribosomal subunit export from nucleus" evidence=IEA

GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

MGI|MGI:1196288 Eif6 "eukaryotic translation initiation factor 6" [Mus musculus (taxid:10090)]

 Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
 Identities = 120/166 (72%), Positives = 140/166 (84%)

Query:     1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
             MA R  FEN+CEVG F+KLTNA+CLVAIGGSE+FYS FE EL+D IPVV  SI G RIIG
Sbjct:     1 MAVRASFENNCEVGCFAKLTNAYCLVAIGGSENFYSVFEGELSDAIPVVHASIAGCRIIG 60

Query:    61 RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
             R+CVGN++GLL+P+ TTDQELQH+RNSLPD V ++R+EERLSALGN   CND+VAL H D
Sbjct:    61 RMCVGNRHGLLVPNNTTDQELQHIRNSLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 120

Query:   121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRIS 166
             LDRETEEI+ADVL VEVFRQT+A  +LVGSYC FSN+GGLV  + S
Sbjct:   121 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTS 166

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005638 "lamin filament" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005882 "intermediate filament" evidence=IDA

GO:0006412 "translation" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0007229 "integrin-mediated signaling pathway" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=ISO

GO:0043022 "ribosome binding" evidence=ISO

RGD|1305373 Eif6 "eukaryotic translation initiation factor 6" [Rattus norvegicus (taxid:10116)]

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 119/166 (71%), Positives = 139/166 (83%)

Query:     1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
             MA R  FEN+CEVG F+KLTN +CLVAIGGSE+FYS FE EL+D IPVV  SI G RIIG
Sbjct:     1 MAVRASFENNCEVGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIG 60

Query:    61 RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
             R+CVGN++GLL+P+ TTDQELQH+RNSLPD V ++R+EERLSALGN   CND+VAL H D
Sbjct:    61 RMCVGNRHGLLVPNNTTDQELQHIRNSLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 120

Query:   121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRIS 166
             LDRETEEI+ADVL VEVFRQT+A  +LVGSYC FSN+GGLV  + S
Sbjct:   121 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTS 166

GO:0000054 "ribosomal subunit export from nucleus" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005638 "lamin filament" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

UNIPROTKB|P56537 EIF6 "Eukaryotic translation initiation factor 6" [Homo sapiens (taxid:9606)]

 Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
 Identities = 118/166 (71%), Positives = 139/166 (83%)

Query:     1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
             MA R  FEN+CE+G F+KLTN +CLVAIGGSE+FYS FE EL+D IPVV  SI G RIIG
Sbjct:     1 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIG 60

Query:    61 RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
             R+CVGN++GLL+P+ TTDQELQH+RNSLPD V ++R+EERLSALGN   CND+VAL H D
Sbjct:    61 RMCVGNRHGLLVPNNTTDQELQHIRNSLPDTVQIRRVEERLSALGNVTTCNDYVALVHPD 120

Query:   121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRIS 166
             LDRETEEI+ADVL VEVFRQT+A  +LVGSYC FSN+GGLV  + S
Sbjct:   121 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTS 166

GO:0000054 "ribosomal subunit export from nucleus" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

GO:0005638 "lamin filament" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0043022 "ribosome binding" evidence=IDA

GO:0042256 "mature ribosome assembly" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|Q9TU47 EIF6 "Eukaryotic translation initiation factor 6" [Bos taurus (taxid:9913)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 117/166 (70%), Positives = 138/166 (83%)

Query:     1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
             MA R  FEN+CE+G F+KLTN++CLVAIGGSE+FYS FE ELA  IPVV  SI G RIIG
Sbjct:     1 MAVRASFENNCEIGCFAKLTNSYCLVAIGGSENFYSVFEGELAGTIPVVHASIAGCRIIG 60

Query:    61 RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
             R+CVGN++GLL+P+ TTDQELQH+RN LPD V ++R+EERLSALGN   CND+VAL H D
Sbjct:    61 RMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 120

Query:   121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRIS 166
             LDRETEEI+ADVL VEVFRQT+A  +LVGSYC FSN+GGLV  + S
Sbjct:   121 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTS 166

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005638 "lamin filament" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0000054 "ribosomal subunit export from nucleus" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

POMBASE|SPCC1919.09 tif6 "translation initiation factor eIF6" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
 Identities = 118/166 (71%), Positives = 139/166 (83%)

Query:     1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
             MA R  FENS E+GVFS LTN++ LVA+GGSE+FYS FEAEL DV+PVV T+IGG RIIG
Sbjct:     1 MALRAQFENSNEIGVFSNLTNSYALVALGGSENFYSVFEAELGDVVPVVHTTIGGTRIIG 60

Query:    61 RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
             RL  GN+ GLL+P +TTD ELQHLRNSLPD V +QR++ERLSALGN +ACND+VAL H D
Sbjct:    61 RLTCGNRKGLLVPSSTTDNELQHLRNSLPDPVKIQRVDERLSALGNIVACNDYVALVHPD 120

Query:   121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRIS 166
             ++RETEEIIADVL VEVFRQT+AGN+L GSYC+ SN+G LV  R S
Sbjct:   121 IERETEEIIADVLDVEVFRQTVAGNVLTGSYCALSNQGALVHPRTS 166

GO:0000054 "ribosomal subunit export from nucleus" evidence=IEA

GO:0002183 "cytoplasmic translational initiation" evidence=NAS

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

UNIPROTKB|E2R1S5 EIF6 "Eukaryotic translation initiation factor 6" [Canis lupus familiaris (taxid:9615)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 117/166 (70%), Positives = 137/166 (82%)

Query:     1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
             MA R  FEN+CE+G F+KLTN +CLVAIGGSE+FYS FE ELAD IPVV  SI G RIIG
Sbjct:     1 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELADTIPVVHASIAGCRIIG 60

Query:    61 RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
             R+CVGN++GLL+P+ TTDQELQH+RN LPD V ++R+EERLSALGN   CND+VAL H D
Sbjct:    61 RMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 120

Query:   121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRIS 166
             LDRETEEI+ADVL VEVFRQT+A  +LVGSY  FSN+GGLV  + S
Sbjct:   121 LDRETEEILADVLKVEVFRQTVADQVLVGSYSVFSNQGGLVHPKTS 166

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005638 "lamin filament" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0000054 "ribosomal subunit export from nucleus" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

FB|FBgn0034915 eIF6 "eIF6" [Drosophila melanogaster (taxid:7227)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 119/166 (71%), Positives = 140/166 (84%)

Query:     1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
             MA R+ FEN+ ++GVF+KLTN +CLVAIGGSE+FYS FEAEL D IPVV  ++GG RIIG
Sbjct:     1 MALRVQFENNDDIGVFTKLTNTYCLVAIGGSETFYSAFEAELGDTIPVVHANVGGCRIIG 60

Query:    61 RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
             RL VGN+NGLL+P++TTD+ELQHLRNSLPD V + R+EERLSALGN IACND+VAL H D
Sbjct:    61 RLTVGNRNGLLVPNSTTDEELQHLRNSLPDAVKIYRVEERLSALGNVIACNDYVALVHPD 120

Query:   121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRIS 166
             LD+ETEEIIADVL VEVFRQTIA N LVGSY   SN+GG+V  + S
Sbjct:   121 LDKETEEIIADVLKVEVFRQTIADNSLVGSYAVLSNQGGMVHPKTS 166

GO:0005829 "cytosol" evidence=ISS;NAS

GO:0006412 "translation" evidence=NAS

GO:0006413 "translational initiation" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0043022 "ribosome binding" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P56538	IF6_DROME	No assigned EC number	0.7168	0.9071	0.6775	yes	no
P56537	IF6_HUMAN	No assigned EC number	0.7108	0.9071	0.6775	yes	no
Q6GR45	IF6_XENLA	No assigned EC number	0.7108	0.9071	0.6775	N/A	no
Q9TU47	IF6_BOVIN	No assigned EC number	0.7048	0.9071	0.6775	yes	no
O55135	IF6_MOUSE	No assigned EC number	0.7228	0.9071	0.6775	yes	no
Q2UTN7	IF6_ASPOR	No assigned EC number	0.7048	0.9071	0.6720	yes	no
A4RSQ6	IF6_OSTLU	No assigned EC number	0.7108	0.8743	0.6530	yes	no
B9PVB9	IF6_TOXGO	No assigned EC number	0.7080	0.8797	0.6465	N/A	no
Q9M060	IF62_ARATH	No assigned EC number	0.8734	0.8852	0.6612	yes	no
B8MDN4	IF6_TALSN	No assigned EC number	0.7048	0.9071	0.6720	N/A	no
Q551M2	IF6_DICDI	No assigned EC number	0.6797	0.9726	0.7295	yes	no
C9SV08	IF6_VERA1	No assigned EC number	0.7048	0.9071	0.6747	N/A	no
Q6ZM19	IF6_DANRE	No assigned EC number	0.6867	0.9071	0.6775	yes	no
Q7S2W6	IF6_NEUCR	No assigned EC number	0.7289	0.9071	0.6747	N/A	no
Q59L13	IF6_CANAL	No assigned EC number	0.7289	0.8852	0.6612	N/A	no
Q5ASA6	IF6_EMENI	No assigned EC number	0.7228	0.9071	0.6720	yes	no
D1ZG64	IF6_SORMK	No assigned EC number	0.7289	0.9071	0.6747	N/A	no
O81920	IF6_BETVU	No assigned EC number	0.8192	0.8907	0.8445	N/A	no
O62106	IF6_CAEEL	No assigned EC number	0.5842	0.9726	0.7235	yes	no
Q3KRD8	IF6_RAT	No assigned EC number	0.7168	0.9071	0.6775	yes	no
Q12522	IF6_YEAST	No assigned EC number	0.7078	0.9453	0.7061	yes	no
O94476	IF6_SCHPO	No assigned EC number	0.6797	0.9726	0.7295	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00019318001	SubName- Full=Putative uncharacterized protein (Chromosome chr7 scaffold_20, whole genome shotgun sequence); (245 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00021307001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa)			•	•	•		•		0.978
	GSVIVG00016251001	SubName- Full=Putative uncharacterized protein (Chromosome chr17 scaffold_12, whole genome shot [...] (143 aa)	•			•			•		0.924
	GSVIVG00030059001	SubName- Full=Putative uncharacterized protein (Chromosome chr1 scaffold_5, whole genome shotgu [...] (146 aa)	•			•			•		0.921
	GSVIVG00037695001	SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (245 aa)				•	•		•		0.906
	GSVIVG00038895001	SubName- Full=Chromosome chr8 scaffold_99, whole genome shotgun sequence; (280 aa)				•	•		•		0.897
	GSVIVG00016611001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (120 aa)	•			•			•		0.883
	GSVIVG00033408001	SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (430 aa)				•	•		•		0.860
	GSVIVG00021667001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (168 aa)	•			•	•		•		0.859
	GSVIVG00019030001	SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (103 aa)				•			•		0.854
	GSVIVG00020673001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (607 aa)				•	•		•		0.852

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	183
PTZ00136	247	PTZ00136, PTZ00136, eukaryotic translation initiat	1e-107
smart00654	200	smart00654, eIF6, translation initiation factor 6	4e-89
cd00527	220	cd00527, IF6, Ribosome anti-association factor IF6	7e-87
pfam01912	197	pfam01912, eIF-6, eIF-6 family	2e-84
COG1976	222	COG1976, TIF6, Translation initiation factor 6 (eI	2e-68
TIGR00323	216	TIGR00323, eIF-6, translation initiation factor eI	9e-60
PRK04046	222	PRK04046, PRK04046, translation initiation factor	2e-44
PRK04046	222	PRK04046, PRK04046, translation initiation factor	2e-09
pfam01912	197	pfam01912, eIF-6, eIF-6 family	4e-08
smart00654	200	smart00654, eIF6, translation initiation factor 6	3e-05
cd00527	220	cd00527, IF6, Ribosome anti-association factor IF6	4e-05
pfam01912	197	pfam01912, eIF-6, eIF-6 family	7e-05
smart00654	200	smart00654, eIF6, translation initiation factor 6	4e-04
TIGR00323	216	TIGR00323, eIF-6, translation initiation factor eI	6e-04
COG1976	222	COG1976, TIF6, Translation initiation factor 6 (eI	0.001
cd00527	220	cd00527, IF6, Ribosome anti-association factor IF6	0.004

>gnl|CDD|185471 PTZ00136, PTZ00136, eukaryotic translation initiation factor 6-like protein; Provisional

 Score =  307 bits (789), Expect = e-107
 Identities = 123/161 (76%), Positives = 140/161 (86%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MA R  FENS ++GVFSKLTN++CLVA+GGSE+FYS FE+ELA  IPVV T+IGG R+IG
Sbjct: 1   MALRTQFENSNDIGVFSKLTNSYCLVALGGSENFYSVFESELAPHIPVVHTTIGGTRVIG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           RL VGN+ GLL+P   TDQELQHLRNSLPD V VQR+EERLSALGNCIACND+VAL H D
Sbjct: 61  RLTVGNRKGLLVPSICTDQELQHLRNSLPDSVKVQRVEERLSALGNCIACNDYVALIHPD 120

Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLV 161
           LDRETEEII DVLGVEVFR TIAGN+LVG+YC F+N+GGLV
Sbjct: 121 LDRETEEIIQDVLGVEVFRTTIAGNVLVGTYCVFTNQGGLV 161

Length = 247

>gnl|CDD|128902 smart00654, eIF6, translation initiation factor 6

 Score =  259 bits (663), Expect = 4e-89
 Identities = 113/164 (68%), Positives = 130/164 (79%), Gaps = 2/164 (1%)

Query: 3   TRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRL 62
            RL FE S  +GV+ KLTN++CLV +GG E+FYS  E  L   +PVV TSIGG+R+IGRL
Sbjct: 1   DRLSFEGSPNIGVYIKLTNSYCLVPVGGDENFYSVIEEVLG--VPVVHTSIGGSRLIGRL 58

Query: 63  CVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLD 122
            VGN NGLL+P+TTTDQELQHLRNSLPD V VQR+EERL+ALGN I CNDH ALA  DL 
Sbjct: 59  TVGNSNGLLVPNTTTDQELQHLRNSLPDSVEVQRVEERLTALGNLILCNDHGALASPDLS 118

Query: 123 RETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRIS 166
           +ETEEII+DVLGVEVFR TIAGNI VGSYC  +N+GGLV    S
Sbjct: 119 KETEEIISDVLGVEVFRGTIAGNITVGSYCVVTNKGGLVHPDTS 162

Length = 200

>gnl|CDD|238292 cd00527, IF6, Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation

 Score =  254 bits (650), Expect = 7e-87
 Identities = 105/160 (65%), Positives = 123/160 (76%), Gaps = 2/160 (1%)

Query: 2   ATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGR 61
           A RL FE S  +GVF+K TN++CLV  GG E+F S FE EL   +PVV+T+IGG+R++G 
Sbjct: 1   AIRLSFEGSPNIGVFAKATNSYCLVPPGGDENFVSKFEEEL--GVPVVRTTIGGSRLVGS 58

Query: 62  LCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDL 121
           L VGN NGLLLPHTTTDQELQH+RNSLPD+V V R++E LSALGN I CNDH AL H DL
Sbjct: 59  LTVGNSNGLLLPHTTTDQELQHIRNSLPDEVGVLRVKENLSALGNVILCNDHGALVHPDL 118

Query: 122 DRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLV 161
            +E EEII DVLGVEVFR TIAG   VGS    +N+GGLV
Sbjct: 119 SKEAEEIIEDVLGVEVFRGTIAGIKTVGSAGVLTNKGGLV 158

IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function. Length = 220

>gnl|CDD|202042 pfam01912, eIF-6, eIF-6 family

 Score =  246 bits (631), Expect = 2e-84
 Identities = 94/158 (59%), Positives = 112/158 (70%), Gaps = 4/158 (2%)

Query: 4   RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLC 63
           RL  E S  +GVF++ TN + LV  G SE FYS  E EL   + VV+TSI G+R++G L 
Sbjct: 1   RLSIEGSPNIGVFARATNDYALVPPGLSEEFYSVIEEELG--VEVVETSIAGSRLVGSLT 58

Query: 64  VGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDR 123
           VGN NGLL+P T TD+EL HL+ SL   V V+R+EE+L+ALGN I  ND  AL H DL R
Sbjct: 59  VGNSNGLLVPSTATDEELDHLKESL--DVNVERLEEKLTALGNVILANDKGALVHPDLSR 116

Query: 124 ETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLV 161
           ETEEIIADVLGVEVFR TIAGN  VGS    +N+GGLV
Sbjct: 117 ETEEIIADVLGVEVFRGTIAGNKTVGSAGVATNKGGLV 154

This family includes eukaryotic translation initiation factor 6 as well as presumed archaebacterial homologues. Length = 197

>gnl|CDD|224887 COG1976, TIF6, Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]

 Score =  207 bits (528), Expect = 2e-68
 Identities = 76/168 (45%), Positives = 98/168 (58%), Gaps = 4/168 (2%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           M  RL FE S  +GV++K T ++ LV  G  E F       L   +PVV+T+I G+R++G
Sbjct: 2   MIRRLSFEGSPNIGVYAKATESYALVPPGLDEKFVDVIREVLG--VPVVETTIAGSRLVG 59

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
            L  GN NGLL+P+   D+EL+ L+N     V V  +  +L+ALGN I  ND  AL H D
Sbjct: 60  ALTAGNSNGLLVPYGVRDEELRRLKN--ALGVEVLILPTKLNALGNLILANDKGALVHPD 117

Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRISSS 168
           L  E E+ I DVLGVEV R TIAG   VGS    +N+GGLV    S  
Sbjct: 118 LSDEAEKEIEDVLGVEVVRGTIAGIPTVGSAGVLTNKGGLVHPETSDE 165

Length = 222

>gnl|CDD|211569 TIGR00323, eIF-6, translation initiation factor eIF-6, putative

 Score =  185 bits (470), Expect = 9e-60
 Identities = 92/165 (55%), Positives = 117/165 (70%), Gaps = 7/165 (4%)

Query: 4   RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLC 63
           R  F  + E+GV++K+T  + LV + GSE+FYS FE EL   +PV+ T+I G+ ++G L 
Sbjct: 1   RTQFSGNPEIGVYAKVTEEYALVPVNGSENFYSAFEEELE--VPVLHTTIAGSSLVGALT 58

Query: 64  VGNKNGLLLPHTTTDQELQHLRNSLPDQVV-VQRIEERLSALGNCIACNDHVALAHTDLD 122
           VGN  GLL+     DQ L H  +SLPD +V VQRIEERL+ALGN I CND+ ALA  +LD
Sbjct: 59  VGNSRGLLVS----DQVLDHELDSLPDSLVKVQRIEERLTALGNLILCNDYGALASPELD 114

Query: 123 RETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRISS 167
           R+TEE+I+DVLGVEVFR TIAG I VGSY   +NRGGLV  + S 
Sbjct: 115 RDTEELISDVLGVEVFRGTIAGLITVGSYAVVTNRGGLVHPQTSV 159

This model finds translation initiation factor eIF-6 of eukaryotes, which is a ribosome dissociation factor. It also finds a set of apparent archaeal orthologs, slightly shorter proteins not yet shown to act as initiation factors; these probably should be designated as translation initiation factor aIF-6, putative [Protein synthesis, Translation factors]. Length = 216

>gnl|CDD|179728 PRK04046, PRK04046, translation initiation factor IF-6; Provisional

 Score =  146 bits (370), Expect = 2e-44
 Identities = 65/161 (40%), Positives = 92/161 (57%), Gaps = 4/161 (2%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           M  RL    S  +GV+++ T+ + LV     E      E  L  V  VV+T+I G+ ++G
Sbjct: 1   MIRRLSIFGSPNIGVYARATDDYALVPPDLDEKTVEKIEETL-GV-EVVETTIAGSSLVG 58

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
            L  GN NG+L+P    D+EL+ L+ +L   + V+ +  +L+ALGN I  ND  AL H +
Sbjct: 59  SLAAGNSNGILVPSIVLDEELELLKEAL--DLNVEVLPSKLTALGNLILANDKGALVHPE 116

Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLV 161
           L  E  ++I D LGVEV R TIAG   VGS    +N+GGLV
Sbjct: 117 LSDEARKVIEDTLGVEVERGTIAGLKTVGSAGVVTNKGGLV 157

Length = 222

>gnl|CDD|179728 PRK04046, PRK04046, translation initiation factor IF-6; Provisional

 Score = 54.4 bits (132), Expect = 2e-09
 Identities = 25/58 (43%), Positives = 32/58 (55%)

Query: 108 IACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRI 165
               D  AL   DLD +T E I + LGVEV   TIAG+ LVGS  + ++ G LV   +
Sbjct: 17  ARATDDYALVPPDLDEKTVEKIEETLGVEVVETTIAGSSLVGSLAAGNSNGILVPSIV 74

Length = 222

>gnl|CDD|202042 pfam01912, eIF-6, eIF-6 family

 Score = 50.6 bits (122), Expect = 4e-08
 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 104 LGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRH 163
           +G      +  AL    L  E   +I + LGVEV   +IAG+ LVGS    ++ G LV  
Sbjct: 10  IGVFARATNDYALVPPGLSEEFYSVIEEELGVEVVETSIAGSRLVGSLTVGNSNGLLVPS 69

Query: 164 RISSS--RHLLKHF 175
             +     HL +  
Sbjct: 70  TATDEELDHLKESL 83

This family includes eukaryotic translation initiation factor 6 as well as presumed archaebacterial homologues. Length = 197

>gnl|CDD|128902 smart00654, eIF6, translation initiation factor 6

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 7/82 (8%)

Query: 99  ERLSALGNC-----IACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCS 153
           +RLS  G+      I   +   L     D     +I +VLGV V   +I G+ L+G    
Sbjct: 1   DRLSFEGSPNIGVYIKLTNSYCLVPVGGDENFYSVIEEVLGVPVVHTSIGGSRLIGRLTV 60

Query: 154 FSNRGGLVRHRISSS--RHLLK 173
            ++ G LV +  +    +HL  
Sbjct: 61  GNSNGLLVPNTTTDQELQHLRN 82

Length = 200

>gnl|CDD|238292 cd00527, IF6, Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 5/74 (6%)

Query: 99  ERLSALGNC-----IACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCS 153
            RLS  G+          +   L     D        + LGV V R TI G+ LVGS   
Sbjct: 2   IRLSFEGSPNIGVFAKATNSYCLVPPGGDENFVSKFEEELGVPVVRTTIGGSRLVGSLTV 61

Query: 154 FSNRGGLVRHRISS 167
            ++ G L+ H  + 
Sbjct: 62  GNSNGLLLPHTTTD 75

IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function. Length = 220

>gnl|CDD|202042 pfam01912, eIF-6, eIF-6 family

 Score = 41.3 bits (98), Expect = 7e-05
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 38  FEAELADV--IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQ 95
            E  +ADV  + V + +I GN+ +G   V    G L+    T++EL+ L   L   V   
Sbjct: 118 TEEIIADVLGVEVFRGTIAGNKTVGSAGVATNKGGLVHPDATEEELEELSELLGVPVDAG 177

Query: 96  RIEERLSALGNCIACNDHVA 115
            +      +G  +  ND  A
Sbjct: 178 TVNRGSPLVGAGLVANDKGA 197

This family includes eukaryotic translation initiation factor 6 as well as presumed archaebacterial homologues. Length = 197

>gnl|CDD|128902 smart00654, eIF6, translation initiation factor 6

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 2/87 (2%)

Query: 31  SESFYSTFEAELADV--IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSL 88
           S       E  ++DV  + V + +I GN  +G  CV    G L+   T+++EL+ L   L
Sbjct: 114 SPDLSKETEEIISDVLGVEVFRGTIAGNITVGSYCVVTNKGGLVHPDTSEEELKELSELL 173

Query: 89  PDQVVVQRIEERLSALGNCIACNDHVA 115
              +V   +      +G  +  ND+ A
Sbjct: 174 GVPLVAGTVNFGSEVVGAGLVANDNGA 200

Length = 200

>gnl|CDD|211569 TIGR00323, eIF-6, translation initiation factor eIF-6, putative

 Score = 38.6 bits (90), Expect = 6e-04
 Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 4/102 (3%)

Query: 36  STFEAELADV--IPVVKTSIGGNRIIGRLC-VGNKNGLLLPHTTTDQELQHLRNSLPDQV 92
              E  ++DV  + V + +I G   +G    V N+ GL+ P  T+ QE + L + L  ++
Sbjct: 115 RDTEELISDVLGVEVFRGTIAGLITVGSYAVVTNRGGLVHPQ-TSVQEQEELSSLLGVEL 173

Query: 93  VVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLG 134
           V   +    + +G C+  N   A+   D       II + LG
Sbjct: 174 VAGTVNRGTTVVGACMVANSKGAVVGLDTTGPELSIIEEALG 215

This model finds translation initiation factor eIF-6 of eukaryotes, which is a ribosome dissociation factor. It also finds a set of apparent archaeal orthologs, slightly shorter proteins not yet shown to act as initiation factors; these probably should be designated as translation initiation factor aIF-6, putative [Protein synthesis, Translation factors]. Length = 216

>gnl|CDD|224887 COG1976, TIF6, Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]

 Score = 38.0 bits (89), Expect = 0.001
 Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 2/99 (2%)

Query: 38  FEAELADV--IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQ 95
            E E+ DV  + VV+ +I G   +G   V    G L+   T+D+EL+ L       V V 
Sbjct: 122 AEKEIEDVLGVEVVRGTIAGIPTVGSAGVLTNKGGLVHPETSDEELEELSELFGVPVDVG 181

Query: 96  RIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLG 134
            +      +G  +  N   AL   D        I D LG
Sbjct: 182 TVNFGSPYVGAGLVANSKGALVGEDTTGPELARIEDALG 220

Length = 222

>gnl|CDD|238292 cd00527, IF6, Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation

 Score = 36.1 bits (84), Expect = 0.004
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 2/85 (2%)

Query: 38  FEAELADV--IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQ 95
            E  + DV  + V + +I G + +G   V    G L+   T+D+EL+ L       VV  
Sbjct: 122 AEEIIEDVLGVEVFRGTIAGIKTVGSAGVLTNKGGLVHPKTSDEELEELSELFKVPVVAG 181

Query: 96  RIEERLSALGNCIACNDHVALAHTD 120
            +      +G  +  N   A+  +D
Sbjct: 182 TVNFGSQYVGAGLVANSKGAVVGSD 206

IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function. Length = 220

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	183
smart00654	200	eIF6 translation initiation factor 6.	100.0
PF01912	199	eIF-6: eIF-6 family; InterPro: IPR002769 This fami	100.0
COG1976	222	TIF6 Translation initiation factor 6 (eIF-6) [Tran	100.0
cd00527	220	IF6 Ribosome anti-association factor IF6 binds the	100.0
TIGR00323	215	eIF-6 translation initiation factor eIF-6, putativ	100.0
PRK04046	222	translation initiation factor IF-6; Provisional	100.0
PRK04046	222	translation initiation factor IF-6; Provisional	100.0
PTZ00136	247	eukaryotic translation initiation factor 6-like pr	100.0
COG1976	222	TIF6 Translation initiation factor 6 (eIF-6) [Tran	100.0
cd00527	220	IF6 Ribosome anti-association factor IF6 binds the	100.0
PTZ00136	247	eukaryotic translation initiation factor 6-like pr	100.0
TIGR00323	215	eIF-6 translation initiation factor eIF-6, putativ	100.0
KOG3185	245	consensus Translation initiation factor 6 (eIF-6)	100.0
smart00654	200	eIF6 translation initiation factor 6.	100.0
PF01912	199	eIF-6: eIF-6 family; InterPro: IPR002769 This fami	100.0
KOG3185	245	consensus Translation initiation factor 6 (eIF-6)	99.93

>smart00654 eIF6 translation initiation factor 6

Probab=100.00  E-value=8.4e-58  Score=377.56  Aligned_cols=176  Identities=65%  Similarity=0.988  Sum_probs=172.3

Q ss_pred             eEEeeeCccceeeEEEeeCCEEEEcCCCChhHHHHHHHHhCCcccEEEEeecCceEEEeEEEeeCCeEEeCCCCCHHHHH
Q 030052            3 TRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQ   82 (183)
Q Consensus         3 ~~~~i~gs~~iG~~~~~Nd~~~Lvp~~i~~~~~~~i~~~L~~~v~vv~~~i~~s~~vG~li~~N~~G~lV~~~~~~~e~~   82 (183)
                      .|++|+||++||+|+++||+++|+|+.+++++++.|++.|+  ++++++++++++++|+++++||||+||||.++++|++
T Consensus         1 ~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~~~~~i~e~L~--v~V~~~~i~~~~~iGnli~~N~~g~lv~~~~~~~el~   78 (200)
T smart00654        1 DRLSFEGSPNIGVYIKLTNSYCLVPVGGDENFYSVIEEVLG--VPVVHTSIGGSRLIGRLTVGNSNGLLVPNTTTDQELQ   78 (200)
T ss_pred             CeEEEcCCcceeEEEEEeCCEEEECCCCCHHHHHHHHHhcC--CcEEEEecCCceeEEEEEEEcCCEEEeCCCCCHHHHH
Confidence            37999999999999999999999999999999999999999  9999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCeEEEEecCCccceeeEEEEeCceeEEccCCCHHHHHHHHhhhCeeEEEEeecCcccceeEEEEcCceEEec
Q 030052           83 HLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVR  162 (183)
Q Consensus        83 ~i~~~L~~~v~v~~~~~~~~avGn~ivaNd~galv~p~~s~~el~~I~dvL~Vev~~gti~G~~~VGs~~vann~G~lV~  162 (183)
                      .|++.|+++++|.+++.+++|+||+++|||||||+||+++++|+|+|+|+||||++++|++|.|+|||++||||||+|||
T Consensus        79 ~i~~~L~d~v~V~~~~~~~~avGn~iv~Nd~g~lvhp~~s~ee~~~i~d~L~V~v~~gTi~G~~~VGs~~VannkG~lv~  158 (200)
T smart00654       79 HLRNSLPDSVEVQRVEERLTALGNLILCNDHGALASPDLSKETEEIISDVLGVEVFRGTIAGNITVGSYCVVTNKGGLVH  158 (200)
T ss_pred             HHHHhcCCCeeEEEEccccccceeEEEEcCceEEECCCCCHHHHHHHHHHhCCeEEEEEecCcccceEEEEEECCEEEEC
Confidence            99999987799999998899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHhhccc
Q 030052          163 HRISSSRHLLKHFLLQCI  180 (183)
Q Consensus       163 ~~tt~~El~~i~~~l~~~  180 (183)
                      |+||++|++|||++|++-
T Consensus       159 ~~tt~~El~~ie~~l~v~  176 (200)
T smart00654      159 PDTSEEELKELSELLGVP  176 (200)
T ss_pred             CCCCHHHHHHHHHHhCCC
Confidence            999999999999999874

>PF01912 eIF-6: eIF-6 family; InterPro: IPR002769 This family includes eukaryotic translation initiation factor 6 (eIF6) as well as presumed archaeal homologues

Probab=100.00  E-value=9.8e-58  Score=375.78  Aligned_cols=175  Identities=50%  Similarity=0.723  Sum_probs=151.1

Q ss_pred             eEEeeeCccceeeEEEeeCCEEEEcCCCChhHHHHHHHHhCCcccEEEEeecCceEEEeEEEeeCCeEEeCCCCCHHHHH
Q 030052            3 TRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQ   82 (183)
Q Consensus         3 ~~~~i~gs~~iG~~~~~Nd~~~Lvp~~i~~~~~~~i~~~L~~~v~vv~~~i~~s~~vG~li~~N~~G~lV~~~~~~~e~~   82 (183)
                      +|++|+||++||+|+++||+|||+|++++++.++.|++.|+  +++++|+|++|+++|+|+++|+||+|||+.++++|++
T Consensus         1 ~r~~~~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~--v~vv~t~I~gs~lvG~l~~GNsnGllvp~~~~d~El~   78 (199)
T PF01912_consen    1 QRLSFYGSPNIGVYARATNDYALVPPGVSEKFVSIIEEELD--VEVVETTIAGSRLVGSLCVGNSNGLLVPSIITDEELE   78 (199)
T ss_dssp             -EE-BTTBS-HHHHEEEESSEEEEETTS-HHHHHHHHHHHT--SEEEEE-BTTBS-HHHH-EEESSEEEEETT--HHHHH
T ss_pred             CeEEEeCCCCEEEEEEEcCCEEEEcCCCCHHHHHHHHHhcC--CcEEEEEecCcceEEEEEEEcCCEEEECCcCCHHHHH
Confidence            58999999999999999999999999999999999999999  9999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCeEEEEecCCccceeeEEEEeCceeEEccCCCHHHHHHHHhhhCeeEEEEeecCcccceeEEEEcCceEEec
Q 030052           83 HLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVR  162 (183)
Q Consensus        83 ~i~~~L~~~v~v~~~~~~~~avGn~ivaNd~galv~p~~s~~el~~I~dvL~Vev~~gti~G~~~VGs~~vann~G~lV~  162 (183)
                      .|++.++ +++|.+++++++|+||+|+|||+||++||++++++.|.|+|+|||||+++||+|.++|||++|+||||+|||
T Consensus        79 ~Lk~~~~-~v~V~~l~~k~tAlGN~Il~ND~~Alv~p~l~~e~~~~I~d~LgVeV~~~tia~~~~VGs~~v~tn~G~Lvh  157 (199)
T PF01912_consen   79 HLKESLP-DVNVEVLPSKLTALGNLILANDKGALVHPELSKETIEIISDVLGVEVFRGTIAGIKTVGSAAVATNKGGLVH  157 (199)
T ss_dssp             HHHHHS--TSEEEEE--SSS-HHHHEEE-SSEEEE-CCGGHHHHHHHHHHHTSEEEE--BTTBS-CCCSEEE-SSEEEE-
T ss_pred             HHHhhCC-CceEEEeCceeccccCEEEEcCcceEEcCCCCHHHHHHHHHhcCceEEEEEecCcccceeeEEEeCcEEEEC
Confidence            9999998 899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHhhccc
Q 030052          163 HRISSSRHLLKHFLLQCI  180 (183)
Q Consensus       163 ~~tt~~El~~i~~~l~~~  180 (183)
                      |+||++|+++++++|++-
T Consensus       158 P~~s~eEl~~l~~~l~v~  175 (199)
T PF01912_consen  158 PDASEEELEELEELLGVP  175 (199)
T ss_dssp             TT--HHHHHHHHHHHTSS
T ss_pred             CCCCHHHHHHHHHHhCCc
Confidence            999999999999999863

The assembly of 80S ribosomes requires joining of the 40S and 60S subunits, which is triggered by the formation of an initiation complex on the 40S subunit. This event is rate-limiting for translation, and depends on external stimuli and the status of the cell. Eukaryotic translation initiation factor 6 (eIF6) binds specifically to the free 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit ribosomes []. Furthermore, eIF6 interacts in the cytoplasm with RACK1, a receptor for activated protein kinase C (PKC). RACK1 is a major component of translating ribosomes, which harbour significant amounts of PKC. Loading 60S subunits with eIF6 caused a dose-dependent translational block and impairment of 80S formation, which are reversed by expression of RACK1 and stimulation of PKC in vivo and in vitro. PKC stimulation leads to eIF6 phosphorylation and its release, promoting 80S subunit formation. RACK1 provides a physical and functional link between PKC signalling and ribosome activation.; GO: 0043022 ribosome binding, 0042256 mature ribosome assembly; PDB: 4A19_J 4A1D_J 4A1B_J 4A18_J 1G61_A 2X7N_B 1G62_A.

>COG1976 TIF6 Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=7.7e-56  Score=365.02  Aligned_cols=176  Identities=44%  Similarity=0.631  Sum_probs=172.2

Q ss_pred             CceEEeeeCccceeeEEEeeCCEEEEcCCCChhHHHHHHHHhCCcccEEEEeecCceEEEeEEEeeCCeEEeCCCCCHHH
Q 030052            1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE   80 (183)
Q Consensus         1 m~~~~~i~gs~~iG~~~~~Nd~~~Lvp~~i~~~~~~~i~~~L~~~v~vv~~~i~~s~~vG~li~~N~~G~lV~~~~~~~e   80 (183)
                      |+.|++++|||+||+|+.+||+|+|+|+..+++.++.|++.|+  +++++++|++|+++|.|+++|+||+|||+.+.++|
T Consensus         2 mi~r~~~~gs~~IGvy~~~t~~~~lv~~~~~e~~~~~i~e~L~--v~vv~ttI~gS~lvG~l~~gNsnG~lvP~~~~d~E   79 (222)
T COG1976           2 MIRRLSFEGSPNIGVYAKATESYALVPPGLDEKFVDVIREVLG--VPVVETTIAGSRLVGALTAGNSNGLLVPYGVRDEE   79 (222)
T ss_pred             ceEEEEecCCCceEEEEEecccEEEEcCCCCHHHHHHHHHHhC--CcEEEEEecCceEEeEEEeecCCceEcCCcccHHH
Confidence            8899999999999999999999999999999999999999999  99999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCeEEEEecCCccceeeEEEEeCceeEEccCCCHHHHHHHHhhhCeeEEEEeecCcccceeEEEEcCceEE
Q 030052           81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGL  160 (183)
Q Consensus        81 ~~~i~~~L~~~v~v~~~~~~~~avGn~ivaNd~galv~p~~s~~el~~I~dvL~Vev~~gti~G~~~VGs~~vann~G~l  160 (183)
                      +++|++.+  +++|.+++++++|+||+|+|||+|||+||++++++.|.|+|+||||++||||+|+|+|||++|+||||+|
T Consensus        80 l~~l~~~~--~v~V~~l~~k~nAlGN~Il~ND~~Alvhp~l~~~a~k~I~d~LgVev~rgtIag~~tVGsa~v~tnkG~L  157 (222)
T COG1976          80 LRRLKNAL--GVEVLILPTKLNALGNLILANDKGALVHPDLSDEAEKEIEDVLGVEVVRGTIAGIPTVGSAGVLTNKGGL  157 (222)
T ss_pred             HHhhcccC--CceEEEeCccccccccEEEecCceeEecCccCHHHHHHHHhhcceEEEEEEecCccceeeEEEEecCcce
Confidence            99999844  5999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCHHHHHHHHHhhccc
Q 030052          161 VRHRISSSRHLLKHFLLQCI  180 (183)
Q Consensus       161 V~~~tt~~El~~i~~~l~~~  180 (183)
                      |||+||++|++++++.|++-
T Consensus       158 vhP~~s~~Ele~Lse~f~V~  177 (222)
T COG1976         158 VHPETSDEELEELSELFGVP  177 (222)
T ss_pred             eCCCCCHHHHHHHHHHhCee
Confidence            99999999999999999863

>cd00527 IF6 Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation

Probab=100.00  E-value=1.5e-55  Score=368.74  Aligned_cols=176  Identities=16%  Similarity=0.184  Sum_probs=168.0

Q ss_pred             CceEEeeeCccceeeEEEeeCCEEEEcCCCChhHHHHHHHHhCCcccEEEEeecCceEEEeEEEeeCCeEEeCCCCCHHH
Q 030052            1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE   80 (183)
Q Consensus         1 m~~~~~i~gs~~iG~~~~~Nd~~~Lvp~~i~~~~~~~i~~~L~~~v~vv~~~i~~s~~vG~li~~N~~G~lV~~~~~~~e   80 (183)
                      |++|++|+||++||+|+++||+|+|+|+.+++++++.|++.|+.+|+++++++.+| ++|+++++||+|+||||.++++|
T Consensus        44 ~i~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~e~~~l~~~L~~~V~v~~~~~~~s-~iGnli~~Nd~g~lv~~~~~~~e  122 (220)
T cd00527          44 PVVRTTIGGSRLVGSLTVGNSNGLLLPHTTTDQELQHIRNSLPDEVGVLRVKENLS-ALGNVILCNDHGALVHPDLSKEA  122 (220)
T ss_pred             cEEEEEEcCccceeEEEEEeCCEEEECCCCCHHHHHHHHHhcCCCeEEEEccccce-eeeeEEEEcCceEEeCCCCCHHH
Confidence            78999999999999999999999999999999999999999998899999988777 99999999999999999999999


Q ss_pred             HHHHHhhCCCCeEEEEecCCccceeeEEEEeCceeEEccCCCHHHHHHHHhhhCeeEEEEee-cCcccceeEEEEcCceE
Q 030052           81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTI-AGNILVGSYCSFSNRGG  159 (183)
Q Consensus        81 ~~~i~~~L~~~v~v~~~~~~~~avGn~ivaNd~galv~p~~s~~el~~I~dvL~Vev~~gti-~G~~~VGs~~vann~G~  159 (183)
                      ++.|++.|++++.+.++ ++++++||+++|||+|||+||+++++|+++|+|+||||+++||+ +|.|+|||++||||||+
T Consensus       123 ~~~i~~~L~v~V~~~~i-~~~~avGn~iv~Nd~g~LvhP~~s~ee~~~i~d~L~V~v~~gTvN~G~~~VGs~~VannkG~  201 (220)
T cd00527         123 EEIIEDVLGVEVFRGTI-AGIKTVGSAGVLTNKGGLVHPKTSDEELEELSELFKVPVVAGTVNFGSQYVGAGLVANSKGA  201 (220)
T ss_pred             HHHHHHhcCCcEEEEEc-cCcccceeEEEEeccEEEECCCCCHHHHHHHHHHhCCcEEEEEEcCCCCceeEEEEEECCEE
Confidence            99999999855544444 67999999999999999999999999999999999999999999 99999999999999999


Q ss_pred             EecCCCCHHHHHHHHHhhc
Q 030052          160 LVRHRISSSRHLLKHFLLQ  178 (183)
Q Consensus       160 lV~~~tt~~El~~i~~~l~  178 (183)
                      ||||+||++|++|||++|+
T Consensus       202 lvg~~tt~~El~~ie~~l~  220 (220)
T cd00527         202 VVGSDTTGPELSRIEDALG  220 (220)
T ss_pred             EECCCCCHHHHHHHHHHhC
Confidence            9999999999999999996

IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function.

>TIGR00323 eIF-6 translation initiation factor eIF-6, putative

Probab=100.00  E-value=7.5e-55  Score=363.35  Aligned_cols=172  Identities=17%  Similarity=0.186  Sum_probs=166.3

Q ss_pred             CceEEeeeCccceeeEEEeeCCEEEEcCCCChhHHHHHHHHhCCcccEEEEeecCceEEEeEEEeeCCeEEeCCCCCHHH
Q 030052            1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE   80 (183)
Q Consensus         1 m~~~~~i~gs~~iG~~~~~Nd~~~Lvp~~i~~~~~~~i~~~L~~~v~vv~~~i~~s~~vG~li~~N~~G~lV~~~~~~~e   80 (183)
                      |++|++|+||++||+|+++||+++|+|+..++++++.|++.|+  |+++++++   +++|+++++||||+|+||.++++|
T Consensus        42 ~i~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~~~~~l~e~l~--V~~i~t~i---~~iGnli~~Nd~G~lv~~~~~~~e  116 (215)
T TIGR00323        42 PVLHTTIAGSSLVGAMTAGNSRGLLVPDQVLDHELDSLPDSLK--VQRIEERL---TALGNNILCNDYGALASPELDRDT  116 (215)
T ss_pred             cEEEEEEcCCcceeEEEEEcCCEEEECCCcCHHHHHhhHhhcC--eEEEeeEE---EeeeeEEEEcCceEEeCCCCCHHH
Confidence            7899999999999999999999999999999999999999999  99999999   999999999999999999999999


Q ss_pred             HHHHHhhCCCCeEEEEec-CCccceeeEEEEeCceeEEccCCCHHHHHHHHhhhCeeEEEEee-cCcccceeEEEEcCce
Q 030052           81 LQHLRNSLPDQVVVQRIE-ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTI-AGNILVGSYCSFSNRG  158 (183)
Q Consensus        81 ~~~i~~~L~~~v~v~~~~-~~~~avGn~ivaNd~galv~p~~s~~el~~I~dvL~Vev~~gti-~G~~~VGs~~vann~G  158 (183)
                      ++.|++.|++  +|.+.+ ++.+++||.+++||+|||+||+++++|+|.|+|+||||+.+||+ +|.|+|||++||||+|
T Consensus       117 ~~~i~~~L~v--~V~~~~i~~~~~vG~~~v~nN~G~lvhP~~s~ee~~~i~d~LgV~v~~gTin~G~~~VGs~~Vann~G  194 (215)
T TIGR00323       117 EELISDVLGV--EVFRGTIAGLITVGSYAVVTNRGGLVHPQTSVQEQEELSSLLGVELVAGTVNRGTTVVGAGMVANSKG  194 (215)
T ss_pred             HHHHHHhcCC--cEEEEecccccccceEEEEeCcEEEECCCCCHHHHHHHHHHhCCcEEEEEecCCCCceeEEEEEECCE
Confidence            9999999984  555556 89999999999999999999999999999999999999999999 7999999999999999


Q ss_pred             EEecCCCCHHHHHHHHHhhcc
Q 030052          159 GLVRHRISSSRHLLKHFLLQC  179 (183)
Q Consensus       159 ~lV~~~tt~~El~~i~~~l~~  179 (183)
                      +||||+||++|++|||++|+|
T Consensus       195 ~lv~~~tt~~El~~ie~~l~~  215 (215)
T TIGR00323       195 AVVGLDTTGPELSIIEEALGL  215 (215)
T ss_pred             EEECCCCCHHHHHHHHHHhCc
Confidence            999999999999999999986

This model finds translation initiation factor eIF-6 of eukaryotes, which is a ribosome dissociation factor. It also finds a set of apparent archaeal orthologs, slightly shorter proteins not yet shown to act as initiation factors; these probably should be designated as translation initiation factor aIF-6, putative.

>PRK04046 translation initiation factor IF-6; Provisional

Probab=100.00  E-value=1.3e-54  Score=363.54  Aligned_cols=173  Identities=21%  Similarity=0.208  Sum_probs=167.8

Q ss_pred             eEEeeeCccceeeEEEeeCCEEEEcCCCChhHHHHHHHHhCCcccEEEEeecCceEEEeEEEeeCCeEEeCCCCCHHHHH
Q 030052            3 TRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQ   82 (183)
Q Consensus         3 ~~~~i~gs~~iG~~~~~Nd~~~Lvp~~i~~~~~~~i~~~L~~~v~vv~~~i~~s~~vG~li~~N~~G~lV~~~~~~~e~~   82 (183)
                      +|++++||+++|+|+++||+++|+|+.+++++++.|++.||  |+++++++ +++++|+++++||+|+|+||.++++|++
T Consensus        47 ~~~~i~gs~~iG~~i~~N~~g~lvp~~~~~~e~~~l~e~L~--v~V~~~~~-~~~~vGn~i~~N~~G~lv~p~~~~ee~~  123 (222)
T PRK04046         47 VETTIAGSSLVGSLAAGNSNGILVPSIVLDEELELLKEALD--LNVEVLPS-KLTALGNLILANDKGALVHPELSDEARK  123 (222)
T ss_pred             EEEEecCCcceEEEEEEcCceEEeCCCCCHHHHHHHHHhcC--ceEEEEec-cccceEeEEEEcCcEEEECCCCCHHHHH
Confidence            68999999999999999999999999999999999999999  99999999 9999999999999999999999999999


Q ss_pred             HHHhhCCCCeEEEEec-CCccceeeEEEEeCceeEEccCCCHHHHHHHHhhhCeeEEEEee-cCcccceeEEEEcCceEE
Q 030052           83 HLRNSLPDQVVVQRIE-ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTI-AGNILVGSYCSFSNRGGL  160 (183)
Q Consensus        83 ~i~~~L~~~v~v~~~~-~~~~avGn~ivaNd~galv~p~~s~~el~~I~dvL~Vev~~gti-~G~~~VGs~~vann~G~l  160 (183)
                      .|++.|+  +++.+.+ ++++++||+++||||||+|||+++++|+++|+|+||||+.++|+ +|.|+|||++||||||+|
T Consensus       124 ~i~~~L~--V~v~~~ti~~~~~VGs~ivaNd~G~lv~p~~t~~ei~~i~~~l~v~~~~gTvn~G~~~VGs~~van~~G~l  201 (222)
T PRK04046        124 VIEDTLG--VEVERGTIAGLKTVGSAGVVTNKGGLVHPDATDEELKFLEDLFKVEVDIGTVNFGSPLVGSGLVANSKGAV  201 (222)
T ss_pred             HHHHhhC--ceEEEEecCCccceeeEEEEeCCEEEECCCCCHHHHHHHHHHhCCceEEeEEcCCCCceeEEEEEeCCEEE
Confidence            9999997  5555555 99999999999999999999999999999999999999999999 999999999999999999


Q ss_pred             ecCCCCHHHHHHHHHhhccc
Q 030052          161 VRHRISSSRHLLKHFLLQCI  180 (183)
Q Consensus       161 V~~~tt~~El~~i~~~l~~~  180 (183)
                      |||+||++|++|||++|+|+
T Consensus       202 vg~~tt~~El~~ie~~l~~~  221 (222)
T PRK04046        202 VGSDTTGPELGRIEDALGFI  221 (222)
T ss_pred             ECCCCCHHHHHHHHHHhccC
Confidence            99999999999999999987

>PRK04046 translation initiation factor IF-6; Provisional

Probab=100.00  E-value=1.8e-52  Score=350.58  Aligned_cols=176  Identities=37%  Similarity=0.554  Sum_probs=172.4

Q ss_pred             CceEEeeeCccceeeEEEeeCCEEEEcCCCChhHHHHHHHHhCCcccEEEEeecCceEEEeEEEeeCCeEEeCCCCCHHH
Q 030052            1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE   80 (183)
Q Consensus         1 m~~~~~i~gs~~iG~~~~~Nd~~~Lvp~~i~~~~~~~i~~~L~~~v~vv~~~i~~s~~vG~li~~N~~G~lV~~~~~~~e   80 (183)
                      |+.|++|+||++||+|+++||++||+|+++++++++.|++.|+  |+++++++++++++|+|+++||+|+++||.++++|
T Consensus         1 ~i~~~~i~gs~~iG~~~~~n~~~~lvp~~~~~~~~~~i~~~L~--v~i~~~~i~gs~~iG~~i~~N~~g~lvp~~~~~~e   78 (222)
T PRK04046          1 MIRRLSIFGSPNIGVYARATDDYALVPPDLDEKTVEKIEETLG--VEVVETTIAGSSLVGSLAAGNSNGILVPSIVLDEE   78 (222)
T ss_pred             CcEEEEEcCCCceEEEEEEcCCEEEECCCCCHHHHHHHHHhcC--ceEEEEEecCCcceEEEEEEcCceEEeCCCCCHHH
Confidence            8999999999999999999999999999999999999999999  99999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCeEEEEecCCccceeeEEEEeCceeEEccCCCHHHHHHHHhhhCeeEEEEeecCcccceeEEEEcCceEE
Q 030052           81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGL  160 (183)
Q Consensus        81 ~~~i~~~L~~~v~v~~~~~~~~avGn~ivaNd~galv~p~~s~~el~~I~dvL~Vev~~gti~G~~~VGs~~vann~G~l  160 (183)
                      ++.|++.|+  +++.+++.+.+++||++++||+||++||+++++|++.|+|+|||+++++|++|.++|||+++|||+|+|
T Consensus        79 ~~~l~e~L~--v~V~~~~~~~~~vGn~i~~N~~G~lv~p~~~~ee~~~i~~~L~V~v~~~ti~~~~~VGs~ivaNd~G~l  156 (222)
T PRK04046         79 LELLKEALD--LNVEVLPSKLTALGNLILANDKGALVHPELSDEARKVIEDTLGVEVERGTIAGLKTVGSAGVVTNKGGL  156 (222)
T ss_pred             HHHHHHhcC--ceEEEEeccccceEeEEEEcCcEEEECCCCCHHHHHHHHHhhCceEEEEecCCccceeeEEEEeCCEEE
Confidence            999999996  788888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCHHHHHHHHHhhccc
Q 030052          161 VRHRISSSRHLLKHFLLQCI  180 (183)
Q Consensus       161 V~~~tt~~El~~i~~~l~~~  180 (183)
                      |||++|++|+++|+++|++-
T Consensus       157 v~p~~t~~ei~~i~~~l~v~  176 (222)
T PRK04046        157 VHPDATDEELKFLEDLFKVE  176 (222)
T ss_pred             ECCCCCHHHHHHHHHHhCCc
Confidence            99999999999999999864

>PTZ00136 eukaryotic translation initiation factor 6-like protein; Provisional

Probab=100.00  E-value=3.8e-52  Score=352.07  Aligned_cols=180  Identities=71%  Similarity=1.077  Sum_probs=177.2

Q ss_pred             CceEEeeeCccceeeEEEeeCCEEEEcCCCChhHHHHHHHHhCCcccEEEEeecCceEEEeEEEeeCCeEEeCCCCCHHH
Q 030052            1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE   80 (183)
Q Consensus         1 m~~~~~i~gs~~iG~~~~~Nd~~~Lvp~~i~~~~~~~i~~~L~~~v~vv~~~i~~s~~vG~li~~N~~G~lV~~~~~~~e   80 (183)
                      |+.|++|+||++||+|+++||+|||+|++.+++.++.|++.|+..+++++++|++|+++|.|++||+||+|||+.++|+|
T Consensus         1 m~~r~~~~gs~~IGVf~~~t~~y~lvp~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~gN~nGllvp~~~~d~E   80 (247)
T PTZ00136          1 MALRTQFENSNDIGVFSKLTNSYCLVALGGSENFYSVFESELAPHIPVVHTTIGGTRVIGRLTVGNRKGLLVPSICTDQE   80 (247)
T ss_pred             CceeEEecCCCcEEEEEEEeCcEEEEcCCCCHHHHHHHHHHhcCCccEEEEEecCceeEEEEEeecCCeEEcCCcCCHHH
Confidence            99999999999999999999999999999999999999999998899999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCeEEEEecCCccceeeEEEEeCceeEEccCCCHHHHHHHHhhhCeeEEEEeecCcccceeEEEEcCceEE
Q 030052           81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGL  160 (183)
Q Consensus        81 ~~~i~~~L~~~v~v~~~~~~~~avGn~ivaNd~galv~p~~s~~el~~I~dvL~Vev~~gti~G~~~VGs~~vann~G~l  160 (183)
                      +++|++.|+++++|.+++.+++|+||.++|||++||+||+++++..+.|+|+||||+.++||+|.++|||.+++||||+|
T Consensus        81 l~~l~~~l~d~v~V~~l~~~~saiGn~i~~ND~~alV~p~l~~~~~e~I~d~L~VeVi~~tIag~~lVGs~~v~Nn~G~L  160 (247)
T PTZ00136         81 LQHLRNSLPDSVKVQRVEERLSALGNCIACNDYVALIHPDLDRETEEIIQDVLGVEVFRTTIAGNVLVGTYCVFTNQGGL  160 (247)
T ss_pred             HHHHHHhCcCCccEEEeCCccccceeEEEEcCCEEEECCCCCHHHHHHHHHhhCCcEEEEEecCCceEEEEEEEeCcEEE
Confidence            99999999888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCHHHHHHHHHhhccc
Q 030052          161 VRHRISSSRHLLKHFLLQCI  180 (183)
Q Consensus       161 V~~~tt~~El~~i~~~l~~~  180 (183)
                      |||+++++|+++|+++||+-
T Consensus       161 VhP~~s~ee~~~i~d~L~V~  180 (247)
T PTZ00136        161 VHPKTSVQEMDELSSLLQVP  180 (247)
T ss_pred             ECCCCCHHHHHHHHHHhCCc
Confidence            99999999999999999863

>COG1976 TIF6 Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.1e-49  Score=325.12  Aligned_cols=173  Identities=20%  Similarity=0.247  Sum_probs=164.8

Q ss_pred             eEEeeeCccceeeEEEeeCCEEEEcCCCChhHHHHHHHHhCCcccEEEEeecCceEEEeEEEeeCCeEEeCCCCCHHHHH
Q 030052            3 TRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQ   82 (183)
Q Consensus         3 ~~~~i~gs~~iG~~~~~Nd~~~Lvp~~i~~~~~~~i~~~L~~~v~vv~~~i~~s~~vG~li~~N~~G~lV~~~~~~~e~~   82 (183)
                      ++++|.||+++|.++++|++++|+|+.+.++|++.|++.++.+|.++++++   +++||++++||+|+|+||.++++..|
T Consensus        48 v~ttI~gS~lvG~l~~gNsnG~lvP~~~~d~El~~l~~~~~v~V~~l~~k~---nAlGN~Il~ND~~Alvhp~l~~~a~k  124 (222)
T COG1976          48 VETTIAGSRLVGALTAGNSNGLLVPYGVRDEELRRLKNALGVEVLILPTKL---NALGNLILANDKGALVHPDLSDEAEK  124 (222)
T ss_pred             EEEEecCceEEeEEEeecCCceEcCCcccHHHHHhhcccCCceEEEeCccc---cccccEEEecCceeEecCccCHHHHH
Confidence            789999999999999999999999999999999999987775677888766   99999999999999999999999999


Q ss_pred             HHHhhCCCCeEEEEec-CCccceeeEEEEeCceeEEccCCCHHHHHHHHhhhCeeEEEEee-cCcccceeEEEEcCceEE
Q 030052           83 HLRNSLPDQVVVQRIE-ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTI-AGNILVGSYCSFSNRGGL  160 (183)
Q Consensus        83 ~i~~~L~~~v~v~~~~-~~~~avGn~ivaNd~galv~p~~s~~el~~I~dvL~Vev~~gti-~G~~~VGs~~vann~G~l  160 (183)
                      .|+|.|+  |++.+.+ ++..++|+..++||||+||||++|++|+|+++++|||+++.||+ +|.++||+|+|||++|++
T Consensus       125 ~I~d~Lg--Vev~rgtIag~~tVGsa~v~tnkG~LvhP~~s~~Ele~Lse~f~V~v~~GTvN~Gs~~VG~glVaNs~g~l  202 (222)
T COG1976         125 EIEDVLG--VEVVRGTIAGIPTVGSAGVLTNKGGLVHPETSDEELEELSELFGVPVDVGTVNFGSPYVGAGLVANSKGAL  202 (222)
T ss_pred             HHHhhcc--eEEEEEEecCccceeeEEEEecCcceeCCCCCHHHHHHHHHHhCeeEEEeeecCCCcceeeEEEEcCCceE
Confidence            9999998  6666666 99999999999999999999999999999999999999999999 999999999999999999


Q ss_pred             ecCCCCHHHHHHHHHhhccc
Q 030052          161 VRHRISSSRHLLKHFLLQCI  180 (183)
Q Consensus       161 V~~~tt~~El~~i~~~l~~~  180 (183)
                      ||.+||+|||.|||++|+++
T Consensus       203 vG~dTTgpEl~rIe~aLg~~  222 (222)
T COG1976         203 VGEDTTGPELARIEDALGFI  222 (222)
T ss_pred             EcCCCCCchHHHHHHHhccC
Confidence            99999999999999999964

>cd00527 IF6 Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation

Probab=100.00  E-value=1.2e-46  Score=314.99  Aligned_cols=176  Identities=60%  Similarity=0.909  Sum_probs=167.3

Q ss_pred             eEEeeeCccceeeEEEeeCCEEEEcCCCChhHHHHHHHHhCCcccEEEEeecCceEEEeEEEeeCCeEEeCCCCCHHHHH
Q 030052            3 TRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQ   82 (183)
Q Consensus         3 ~~~~i~gs~~iG~~~~~Nd~~~Lvp~~i~~~~~~~i~~~L~~~v~vv~~~i~~s~~vG~li~~N~~G~lV~~~~~~~e~~   82 (183)
                      +|++|+||++||+|+++||+|||+|++++++..+.|++.|+  ++++++++++++++|.|+++|++|+++|+.++++|++
T Consensus         2 ~~~~~~g~~~iGv~~~~~~~~~lvp~~~~~~~~~~i~e~L~--v~i~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~e~~   79 (220)
T cd00527           2 IRLSFEGSPNIGVFAKATNSYCLVPPGGDENFVSKFEEELG--VPVVRTTIGGSRLVGSLTVGNSNGLLLPHTTTDQELQ   79 (220)
T ss_pred             eeEEEeCCCCeEEEEEEeccEEEEcCCCCHHHHHHHHHHhC--CcEEEEEEcCccceeEEEEEeCCEEEECCCCCHHHHH
Confidence            79999999999999999999999999999999999999999  9999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCeEEEEecCCccceeeEEEEeCceeEEccCCCHHHHHHHHhhhCeeEEEEeecCcccceeEEEEcCceEEec
Q 030052           83 HLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVR  162 (183)
Q Consensus        83 ~i~~~L~~~v~v~~~~~~~~avGn~ivaNd~galv~p~~s~~el~~I~dvL~Vev~~gti~G~~~VGs~~vann~G~lV~  162 (183)
                      .|++.|+.++++.+.+.+.+++||++++||+|+++||.++++|++.|+|+|+|+|+++++++.+.||+.+++||||+|||
T Consensus        80 ~l~~~L~~~V~v~~~~~~~s~iGnli~~Nd~g~lv~~~~~~~e~~~i~~~L~v~V~~~~i~~~~avGn~iv~Nd~g~Lvh  159 (220)
T cd00527          80 HIRNSLPDEVGVLRVKENLSALGNVILCNDHGALVHPDLSKEAEEIIEDVLGVEVFRGTIAGIKTVGSAGVLTNKGGLVH  159 (220)
T ss_pred             HHHHhcCCCeEEEEccccceeeeeEEEEcCceEEeCCCCCHHHHHHHHHhcCCcEEEEEccCcccceeEEEEeccEEEEC
Confidence            99999975566655544444999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHhhccc
Q 030052          163 HRISSSRHLLKHFLLQCI  180 (183)
Q Consensus       163 ~~tt~~El~~i~~~l~~~  180 (183)
                      |+++++|++.|+++|++-
T Consensus       160 P~~s~ee~~~i~d~L~V~  177 (220)
T cd00527         160 PKTSDEELEELSELFKVP  177 (220)
T ss_pred             CCCCHHHHHHHHHHhCCc
Confidence            999999999999999863

IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function.

>PTZ00136 eukaryotic translation initiation factor 6-like protein; Provisional

Probab=100.00  E-value=1.6e-46  Score=317.77  Aligned_cols=174  Identities=11%  Similarity=0.106  Sum_probs=161.7

Q ss_pred             ceEEeeeCccceeeEEEeeCCEEEEcCCCChhHHHHHHHHh--CCcccEEEEeecCceEEEeEEEeeCCeEEeCCCCCHH
Q 030052            2 ATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAEL--ADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQ   79 (183)
Q Consensus         2 ~~~~~i~gs~~iG~~~~~Nd~~~Lvp~~i~~~~~~~i~~~L--~~~v~vv~~~i~~s~~vG~li~~N~~G~lV~~~~~~~   79 (183)
                      .++++|+||+++|.++++|++++|+|+.+.++|++.|++.|  +.+|..++   .+.+++|+++++||+++||||.++++
T Consensus        48 vv~tsI~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~d~v~V~~l~---~~~saiGn~i~~ND~~alV~p~l~~~  124 (247)
T PTZ00136         48 VVHTTIGGTRVIGRLTVGNRKGLLVPSICTDQELQHLRNSLPDSVKVQRVE---ERLSALGNCIACNDYVALIHPDLDRE  124 (247)
T ss_pred             EEEEEecCceeEEEEEeecCCeEEcCCcCCHHHHHHHHHhCcCCccEEEeC---CccccceeEEEEcCCEEEECCCCCHH
Confidence            37899999999999999999999999999999999999988  53344455   45599999999999999999999999


Q ss_pred             HHHHHHhhCCCCeEEEEec-CCccceeeEEEEeCceeEEccCCCHHHHHHHHhhhCeeEEEEee-cCcccceeEEEEcCc
Q 030052           80 ELQHLRNSLPDQVVVQRIE-ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTI-AGNILVGSYCSFSNR  157 (183)
Q Consensus        80 e~~~i~~~L~~~v~v~~~~-~~~~avGn~ivaNd~galv~p~~s~~el~~I~dvL~Vev~~gti-~G~~~VGs~~vann~  157 (183)
                      ..+.|++.|+  |++.+.+ ++...+|++.++||+||||||+++++|+++|+|+||||+++||+ +|.|+||||+||||+
T Consensus       125 ~~e~I~d~L~--VeVi~~tIag~~lVGs~~v~Nn~G~LVhP~~s~ee~~~i~d~L~V~v~~gTVn~G~~~VGsg~VaNn~  202 (247)
T PTZ00136        125 TEEIIQDVLG--VEVFRTTIAGNVLVGTYCVFTNQGGLVHPKTSVQEMDELSSLLQVPLVAGTVNRGSDVIGAGLVVNDW  202 (247)
T ss_pred             HHHHHHHhhC--CcEEEEEecCCceEEEEEEEeCcEEEECCCCCHHHHHHHHHHhCCcEEEeeecCCCCceeEEEEEECC
Confidence            9999999998  5555555 89999999999999999999999999999999999999999999 799999999999999


Q ss_pred             eEEecCCCCHHHHHHHHHhhccc
Q 030052          158 GGLVRHRISSSRHLLKHFLLQCI  180 (183)
Q Consensus       158 G~lV~~~tt~~El~~i~~~l~~~  180 (183)
                      |++|||+||++|+++||++|++-
T Consensus       203 G~lvg~~TT~~El~~Ie~~l~v~  225 (247)
T PTZ00136        203 AAFCGMDTTATEISVIERIFKLR  225 (247)
T ss_pred             EEEECCCCCHHHHHHHHHHhCCC
Confidence            99999999999999999999874

>TIGR00323 eIF-6 translation initiation factor eIF-6, putative

Probab=100.00  E-value=1.2e-44  Score=302.04  Aligned_cols=171  Identities=53%  Similarity=0.821  Sum_probs=165.1

Q ss_pred             EEeeeCccceeeEEEeeCCEEEEcCCCChhHHHHHHHHhCCcccEEEEeecCceEEEeEEEeeCCeEEeCCCCCHHHHHH
Q 030052            4 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQH   83 (183)
Q Consensus         4 ~~~i~gs~~iG~~~~~Nd~~~Lvp~~i~~~~~~~i~~~L~~~v~vv~~~i~~s~~vG~li~~N~~G~lV~~~~~~~e~~~   83 (183)
                      |++|+|||+||+|+++||+|||+|++.+++..+.|++.|+  ++++++++++++.+|.|+++||+|+++|+..++++++.
T Consensus         1 ~~~~~g~~~iGv~~~~~~~~~~vp~~~~~~~~~~~~e~l~--v~i~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~~~~~   78 (215)
T TIGR00323         1 RTQFSGNPEIGVYAKVTEEYALVPVNGSENFYSAFEEELE--VPVLHTTIAGSSLVGAMTAGNSRGLLVPDQVLDHELDS   78 (215)
T ss_pred             CeeeeCCCCEEEEEEEeCcEEEEcCCCCHHHHHHHHHHhC--CcEEEEEEcCCcceeEEEEEcCCEEEECCCcCHHHHHh
Confidence            6899999999999999999999999999999999999999  99999999999999999999999999999999999999


Q ss_pred             HHhhCCCCeEEEEecCCccceeeEEEEeCceeEEccCCCHHHHHHHHhhhCeeEEEEeecCcccceeEEEEcCceEEecC
Q 030052           84 LRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRH  163 (183)
Q Consensus        84 i~~~L~~~v~v~~~~~~~~avGn~ivaNd~galv~p~~s~~el~~I~dvL~Vev~~gti~G~~~VGs~~vann~G~lV~~  163 (183)
                      |++.|    ++.+++.+++++||++++||+|+++||.++++|++.|+|.|+++|.+.++++.+++|+.+++||||+||||
T Consensus        79 l~e~l----~V~~i~t~i~~iGnli~~Nd~G~lv~~~~~~~e~~~i~~~L~v~V~~~~i~~~~~vG~~~v~nN~G~lvhP  154 (215)
T TIGR00323        79 LPDSL----KVQRIEERLTALGNNILCNDYGALASPELDRDTEELISDVLGVEVFRGTIAGLITVGSYAVVTNRGGLVHP  154 (215)
T ss_pred             hHhhc----CeEEEeeEEEeeeeEEEEcCceEEeCCCCCHHHHHHHHHhcCCcEEEEecccccccceEEEEeCcEEEECC
Confidence            99875    46667778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHhhccc
Q 030052          164 RISSSRHLLKHFLLQCI  180 (183)
Q Consensus       164 ~tt~~El~~i~~~l~~~  180 (183)
                      +++++|++.|+++|++-
T Consensus       155 ~~s~ee~~~i~d~LgV~  171 (215)
T TIGR00323       155 QTSVQEQEELSSLLGVE  171 (215)
T ss_pred             CCCHHHHHHHHHHhCCc
Confidence            99999999999999863

This model finds translation initiation factor eIF-6 of eukaryotes, which is a ribosome dissociation factor. It also finds a set of apparent archaeal orthologs, slightly shorter proteins not yet shown to act as initiation factors; these probably should be designated as translation initiation factor aIF-6, putative.

>KOG3185 consensus Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.3e-43  Score=289.19  Aligned_cols=180  Identities=76%  Similarity=1.119  Sum_probs=177.2

Q ss_pred             CceEEeeeCccceeeEEEeeCCEEEEcCCCChhHHHHHHHHhCCcccEEEEeecCceEEEeEEEeeCCeEEeCCCCCHHH
Q 030052            1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE   80 (183)
Q Consensus         1 m~~~~~i~gs~~iG~~~~~Nd~~~Lvp~~i~~~~~~~i~~~L~~~v~vv~~~i~~s~~vG~li~~N~~G~lV~~~~~~~e   80 (183)
                      |..|+.|.+|+.||+|...+|.|||+...-++..+..++..|+..+|++.++|++++.+|.+++||.+|+|||..++|+|
T Consensus         1 Ma~R~qfens~eiGvf~kLTNtYclva~ggS~nfys~~e~el~d~IPiV~tsI~g~riiGrl~~GNr~GLLvp~~tTDqE   80 (245)
T KOG3185|consen    1 MALRVQFENSNEIGVFSKLTNTYCLVAIGGSENFYSAFEAELGDVIPIVHTSIGGTRIIGRLCVGNRHGLLVPHTTTDQE   80 (245)
T ss_pred             CceeeeecCCcceeeeeecccceEEEEecCchhHHHHHHHHhcCccceEEeeccceeeeehhhccCcCceecCCcCcHHH
Confidence            88999999999999999999999999999999999999999998899999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCeEEEEecCCccceeeEEEEeCceeEEccCCCHHHHHHHHhhhCeeEEEEeecCcccceeEEEEcCceEE
Q 030052           81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGL  160 (183)
Q Consensus        81 ~~~i~~~L~~~v~v~~~~~~~~avGn~ivaNd~galv~p~~s~~el~~I~dvL~Vev~~gti~G~~~VGs~~vann~G~l  160 (183)
                      +++|+++||++|.+.|++.+++|+||+|.|||+-|++||++++|..+.|.|+|||||+|.||++.++|||+++.+|+|++
T Consensus        81 lqHlRnSLPd~V~i~RveErlsALGNviaCNDyvAlvH~dldketEeii~dVL~VeVfRqtia~n~LvGsyc~lsnqG~l  160 (245)
T KOG3185|consen   81 LQHLRNSLPDEVVIQRVEERLSALGNVIACNDYVALVHPDLDKETEEIIADVLKVEVFRQTIAQNSLVGSYCALSNQGGL  160 (245)
T ss_pred             HHHHHhcCCcceeeehhhhHHhhhcCEEEecceeEEecCccchhHHHHHHHHhheeeeeecccCCceeeeeEEEcCCCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCHHHHHHHHHhhccc
Q 030052          161 VRHRISSSRHLLKHFLLQCI  180 (183)
Q Consensus       161 V~~~tt~~El~~i~~~l~~~  180 (183)
                      |||.|+-++++.++.+||..
T Consensus       161 Vhp~Ts~e~q~Els~LlqVp  180 (245)
T KOG3185|consen  161 VHPRTSVEDQDELSSLLQVP  180 (245)
T ss_pred             ecCCCCHHHHHHHHHHhccc
Confidence            99999999999999999864

>smart00654 eIF6 translation initiation factor 6

Probab=100.00  E-value=3.5e-41  Score=278.57  Aligned_cols=155  Identities=18%  Similarity=0.225  Sum_probs=143.5

Q ss_pred             eEEeeeCccceeeEEEeeCCEEEEcCCCChhHHHHHHHHhCCcccEEEEeecCceEEEeEEEeeCCeEEeCCCCCHHHHH
Q 030052            3 TRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQ   82 (183)
Q Consensus         3 ~~~~i~gs~~iG~~~~~Nd~~~Lvp~~i~~~~~~~i~~~L~~~v~vv~~~i~~s~~vG~li~~N~~G~lV~~~~~~~e~~   82 (183)
                      .++++++++++|+++++||+++|+||.+++++++.|++.|+..+++.+.+. +.+++||++++||+|+|+||.++++|++
T Consensus        45 ~~~~i~~~~~iGnli~~N~~g~lv~~~~~~~el~~i~~~L~d~v~V~~~~~-~~~avGn~iv~Nd~g~lvhp~~s~ee~~  123 (200)
T smart00654       45 VHTSIGGSRLIGRLTVGNSNGLLVPNTTTDQELQHLRNSLPDSVEVQRVEE-RLTALGNLILCNDHGALASPDLSKETEE  123 (200)
T ss_pred             EEEecCCceeEEEEEEEcCCEEEeCCCCCHHHHHHHHHhcCCCeeEEEEcc-ccccceeEEEEcCceEEECCCCCHHHHH
Confidence            578999999999999999999999999999999999999863344433332 3799999999999999999999999999


Q ss_pred             HHHhhCCCCeEEEEecCCccceeeEEEEeCceeEEccCCCHHHHHHHHhhhCeeEEEEee-cCcccceeEEEEcCceE
Q 030052           83 HLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTI-AGNILVGSYCSFSNRGG  159 (183)
Q Consensus        83 ~i~~~L~~~v~v~~~~~~~~avGn~ivaNd~galv~p~~s~~el~~I~dvL~Vev~~gti-~G~~~VGs~~vann~G~  159 (183)
                      .|+|.|++++...++ ++.+++|+.++|||||+||||++|++|+++|+++||++++.||+ +|.||||||++||++|+
T Consensus       124 ~i~d~L~V~v~~gTi-~G~~~VGs~~VannkG~lv~~~tt~~El~~ie~~l~v~~~~gTvN~G~~~vg~glvaN~~g~  200 (200)
T smart00654      124 IISDVLGVEVFRGTI-AGNITVGSYCVVTNKGGLVHPDTSEEELKELSELLGVPLVAGTVNFGSEVVGAGLVANDNGA  200 (200)
T ss_pred             HHHHHhCCeEEEEEe-cCcccceEEEEEECCEEEECCCCCHHHHHHHHHHhCCCcccceecCCCCceeeEEEEccccC
Confidence            999999988777778 99999999999999999999999999999999999999999999 99999999999999995

>PF01912 eIF-6: eIF-6 family; InterPro: IPR002769 This family includes eukaryotic translation initiation factor 6 (eIF6) as well as presumed archaeal homologues

Probab=100.00  E-value=3.8e-42  Score=283.34  Aligned_cols=152  Identities=21%  Similarity=0.269  Sum_probs=126.0

Q ss_pred             eEEeeeCccceeeEEEeeCCEEEEcCCCChhHHHHHHHHh-CCcccEEEEeecCceEEEeEEEeeCCeEEeCCCCCHHHH
Q 030052            3 TRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAEL-ADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQEL   81 (183)
Q Consensus         3 ~~~~i~gs~~iG~~~~~Nd~~~Lvp~~i~~~~~~~i~~~L-~~~v~vv~~~i~~s~~vG~li~~N~~G~lV~~~~~~~e~   81 (183)
                      ++++|+||+++|.|+++|++++|+|+.+.++|++.|++.+ |.+|.+++.+.   +++||++++||+|+++||.+++++.
T Consensus        45 v~t~I~gs~lvG~l~~GNsnGllvp~~~~d~El~~Lk~~~~~v~V~~l~~k~---tAlGN~Il~ND~~Alv~p~l~~e~~  121 (199)
T PF01912_consen   45 VETTIAGSRLVGSLCVGNSNGLLVPSIITDEELEHLKESLPDVNVEVLPSKL---TALGNLILANDKGALVHPELSKETI  121 (199)
T ss_dssp             EEE-BTTBS-HHHH-EEESSEEEEETT--HHHHHHHHHHS-TSEEEEE--SS---S-HHHHEEE-SSEEEE-CCGGHHHH
T ss_pred             EEEEecCcceEEEEEEEcCCEEEECCcCCHHHHHHHHhhCCCceEEEeCcee---ccccCEEEEcCcceEEcCCCCHHHH
Confidence            7899999999999999999999999999999999999999 76677787554   9999999999999999999999999


Q ss_pred             HHHHhhCCCCeEEEEec-CCccceeeEEEEeCceeEEccCCCHHHHHHHHhhhCeeEEEEee-cCcccceeEEEEcCceE
Q 030052           82 QHLRNSLPDQVVVQRIE-ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTI-AGNILVGSYCSFSNRGG  159 (183)
Q Consensus        82 ~~i~~~L~~~v~v~~~~-~~~~avGn~ivaNd~galv~p~~s~~el~~I~dvL~Vev~~gti-~G~~~VGs~~vann~G~  159 (183)
                      +.|+|.|+  |+|.+.+ ++.+++|+..++||+|+|+||+++++|+++++++|+|++++||+ +|.||||||++|||+|+
T Consensus       122 ~~I~d~Lg--VeV~~~tia~~~~VGs~~v~tn~G~LvhP~~s~eEl~~l~~~l~v~~~~GTVN~Gs~~VgsGlvaN~~g~  199 (199)
T PF01912_consen  122 EIISDVLG--VEVFRGTIAGIKTVGSAAVATNKGGLVHPDASEEELEELEELLGVPVDIGTVNRGSPFVGSGLVANDKGA  199 (199)
T ss_dssp             HHHHHHHT--SEEEE--BTTBS-CCCSEEE-SSEEEE-TT--HHHHHHHHHHHTSSEEE--BTTTBS-HHHHEEEESSEE
T ss_pred             HHHHHhcC--ceEEEEEecCcccceeeEEEeCcEEEECCCCCHHHHHHHHHHhCCceeeeeecCCCCceeEEEEeccccC
Confidence            99999998  6666666 99999999999999999999999999999999999999999999 99999999999999996

The assembly of 80S ribosomes requires joining of the 40S and 60S subunits, which is triggered by the formation of an initiation complex on the 40S subunit. This event is rate-limiting for translation, and depends on external stimuli and the status of the cell. Eukaryotic translation initiation factor 6 (eIF6) binds specifically to the free 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit ribosomes []. Furthermore, eIF6 interacts in the cytoplasm with RACK1, a receptor for activated protein kinase C (PKC). RACK1 is a major component of translating ribosomes, which harbour significant amounts of PKC. Loading 60S subunits with eIF6 caused a dose-dependent translational block and impairment of 80S formation, which are reversed by expression of RACK1 and stimulation of PKC in vivo and in vitro. PKC stimulation leads to eIF6 phosphorylation and its release, promoting 80S subunit formation. RACK1 provides a physical and functional link between PKC signalling and ribosome activation.; GO: 0043022 ribosome binding, 0042256 mature ribosome assembly; PDB: 4A19_J 4A1D_J 4A1B_J 4A18_J 1G61_A 2X7N_B 1G62_A.

>KOG3185 consensus Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=2.5e-25  Score=182.13  Aligned_cols=176  Identities=13%  Similarity=0.137  Sum_probs=162.0

Q ss_pred             ceEEeeeCccceeeEEEeeCCEEEEcCCCChhHHHHHHHHhCCcccEEEEeecCceEEEeEEEeeCCeEEeCCCCCHHHH
Q 030052            2 ATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQEL   81 (183)
Q Consensus         2 ~~~~~i~gs~~iG~~~~~Nd~~~Lvp~~i~~~~~~~i~~~L~~~v~vv~~~i~~s~~vG~li~~N~~G~lV~~~~~~~e~   81 (183)
                      ++.++|.|++.||-++++|-++.|||..+.+.|+..|+..|...|.+-+. --+-.++||.+++||.-+||||++++|--
T Consensus        48 iV~tsI~g~riiGrl~~GNr~GLLvp~~tTDqElqHlRnSLPd~V~i~Rv-eErlsALGNviaCNDyvAlvH~dldketE  126 (245)
T KOG3185|consen   48 IVHTSIGGTRIIGRLCVGNRHGLLVPHTTTDQELQHLRNSLPDEVVIQRV-EERLSALGNVIACNDYVALVHPDLDKETE  126 (245)
T ss_pred             eEEeeccceeeeehhhccCcCceecCCcCcHHHHHHHHhcCCcceeeehh-hhHHhhhcCEEEecceeEEecCccchhHH
Confidence            47899999999999999999999999999999999999999744444332 13348999999999999999999999998


Q ss_pred             HHHHhhCCCCeEEEEec-CCccceeeEEEEeCceeEEccCCCHHHHHHHHhhhCeeEEEEee-cCcccceeEEEEcCceE
Q 030052           82 QHLRNSLPDQVVVQRIE-ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTI-AGNILVGSYCSFSNRGG  159 (183)
Q Consensus        82 ~~i~~~L~~~v~v~~~~-~~~~avGn~ivaNd~galv~p~~s~~el~~I~dvL~Vev~~gti-~G~~~VGs~~vann~G~  159 (183)
                      +.|+|.|+  |+|.|-+ ++...+|+...-+|+|++|||.++-++.+.++..|.|++.-||+ +|...+|+|+|+|+.=+
T Consensus       127 eii~dVL~--VeVfRqtia~n~LvGsyc~lsnqG~lVhp~Ts~e~q~Els~LlqVplVAGTvNrGS~vi~aGmvvNDw~a  204 (245)
T KOG3185|consen  127 EIIADVLK--VEVFRQTIAQNSLVGSYCALSNQGGLVHPRTSVEDQDELSSLLQVPLVAGTVNRGSEVIGAGMVVNDWTA  204 (245)
T ss_pred             HHHHHHhh--eeeeeecccCCceeeeeEEEcCCCceecCCCCHHHHHHHHHHhccceeeeeecCCceeeecceEeeceee
Confidence            99999997  8888777 88999999999999999999999999999999999999999999 99999999999999999


Q ss_pred             EecCCCCHHHHHHHHHhhccc
Q 030052          160 LVRHRISSSRHLLKHFLLQCI  180 (183)
Q Consensus       160 lV~~~tt~~El~~i~~~l~~~  180 (183)
                      ..|-+||-.|+..+|..|.+-
T Consensus       205 f~G~dTTa~ElsViesiFkL~  225 (245)
T KOG3185|consen  205 FCGLDTTATELSVIESIFKLN  225 (245)
T ss_pred             eeccCCcchhHHHHHHHHhhc
Confidence            999999999999999999763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	183
3j2i_B	245	Structure Of Late Pre-60s Ribosomal Subunits With N		3e-71
1g62_A	224	Crystal Structure Of S.Cerevisiae Eif6 Length = 224		5e-71
4a18_J	248	T.Thermophila 60s Ribosomal Subunit In Complex With		2e-61
4adx_I	222	The Cryo-Em Structure Of The Archaeal 50s Ribosomal		2e-17
1g61_A	228	Crystal Structure Of M.Jannaschii Eif6 Length = 228		3e-13

>pdb|3J2I|B Chain B, Structure Of Late Pre-60s Ribosomal Subunits With Nuclear Export Factor Arx1 Bound At The Peptide Exit Tunnel Length = 245

Iteration: 1
 Score =  263 bits (673), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 126/178 (70%), Positives = 144/178 (80%)
Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MATR  FENS E+GVFSKLTN +CLVA+GGSE+FYS FEAEL D IP+V T+I G RIIG
Sbjct: 1   MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIG 60
Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           R+  GN+ GLL+P  TTDQELQHLRNSLPD V +QR+EERLSALGN I CND+VAL H D
Sbjct: 61  RMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPD 120
Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRISSSRHLLKHFLLQ 178
           +DRETEE+I+DVLGVEVFRQTI+GNILVGSYCS SN+GGLV  + S         LLQ
Sbjct: 121 IDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQ 178

>pdb|1G62|A Chain A, Crystal Structure Of S.Cerevisiae Eif6 Length = 224

Iteration: 1
 Score =  263 bits (671), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 123/166 (74%), Positives = 141/166 (84%)
Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MATR  FENS E+GVFSKLTN +CLVA+GGSE+FYS FEAEL D IP+V T+I G RIIG
Sbjct: 1   MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIG 60
Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           R+  GN+ GLL+P  TTDQELQHLRNSLPD V +QR+EERLSALGN I CND+VAL H D
Sbjct: 61  RMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPD 120
Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRIS 166
           +DRETEE+I+DVLGVEVFRQTI+GNILVGSYCS SN+GGLV  + S
Sbjct: 121 IDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTS 166

>pdb|4A18|J Chain J, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 248

Iteration: 1
 Score =  231 bits (589), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 112/171 (65%), Positives = 138/171 (80%), Gaps = 1/171 (0%)
Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MA R  FENS ++GVF KLT+A+CLV++G SE+FYS FE+EL   IPV+ TSIGG RI+G
Sbjct: 4   MARRCQFENSNDIGVFCKLTSAYCLVSVGASENFYSVFESELVPHIPVIHTSIGGTRIVG 63
Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           R+  GNKNGLL+P+T  D EL+++RNSLPD V V+RIEE+LSALGNC+  ND+VAL H D
Sbjct: 64  RVTCGNKNGLLVPNTCNDNELRNIRNSLPDNVRVRRIEEKLSALGNCVVANDYVALIHPD 123
Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRISSSRHL 171
           LDRE+EEIIAD LGVEVFR TIA N+LVG+YC  +NRGGLV H ++S   L
Sbjct: 124 LDRESEEIIADTLGVEVFRTTIANNVLVGTYCVINNRGGLV-HPLASVEEL 173

>pdb|4ADX|I Chain I, The Cryo-Em Structure Of The Archaeal 50s Ribosomal Subunit In Complex With Initiation Factor 6 Length = 222

Iteration: 1
 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 89/167 (53%), Gaps = 5/167 (2%)
Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           M  R+    +  +GV+  +T++  L+     E F       L   + V+K SI G+ + G
Sbjct: 1   MIRRINLSGNPNLGVYISVTDSVALIPQNTPEKFEGVLREALE--VEVLKVSISGSSLNG 58
Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
            L VGN NG ++ +   D+E+  L  +  + V   RI ER +A+GN +  ND+ A+A   
Sbjct: 59  ALAVGNSNGFVVSNQAMDREIDALAAAGVEAV---RIPERFTAVGNLVLANDNGAVASPL 115
Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRISS 167
           L  +  ++I DVL V+V   T+AG  +VGS  + +NRG L+  + SS
Sbjct: 116 LSDDALQVIGDVLEVDVKVSTLAGLNIVGSMGAATNRGALLNPQASS 162

>pdb|1G61|A Chain A, Crystal Structure Of M.Jannaschii Eif6 Length = 228

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 86/164 (52%), Gaps = 12/164 (7%)
Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEA-ELADVIPV--VKTSIGGNR 57
           M  R  F     +GV +  T    L+ I     F    +  E+++V+    ++T+IGG+ 
Sbjct: 3   MIIRKYFSGIPTIGVLALTTEEITLLPI-----FLDKDDVNEVSEVLETKCLQTNIGGSS 57
Query: 58  IIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHV 114
           ++G L V NK GLLLP    D+EL  ++N L +    + V+ I+ + +ALGN I  ND  
Sbjct: 58  LVGSLSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKG 117
Query: 115 ALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRG 158
           AL   +L ++ ++ I D L VEV   TIA    VGS    +N+G
Sbjct: 118 ALISPEL-KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNKG 160

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	183
1g62_A	224	Ribosome anti-association factor EIF6; alpha-beta	3e-75
1g62_A	224	Ribosome anti-association factor EIF6; alpha-beta	2e-12
1g62_A	224	Ribosome anti-association factor EIF6; alpha-beta	2e-04
4a18_J	248	EIF6, translation initiation factor EIF-6, putativ	1e-73
4a18_J	248	EIF6, translation initiation factor EIF-6, putativ	9e-13
4a18_J	248	EIF6, translation initiation factor EIF-6, putativ	1e-04
4adx_I	222	AIF6; ribosome, protein synthesis; 6.60A {Methanot	1e-67
4adx_I	222	AIF6; ribosome, protein synthesis; 6.60A {Methanot	3e-08
1g61_A	228	EIF-6, translation initiation factor 6; alpha-beta	4e-67
1g61_A	228	EIF-6, translation initiation factor 6; alpha-beta	1e-07
1g61_A	228	EIF-6, translation initiation factor 6; alpha-beta	7e-07

>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B Length = 224

 Score =  224 bits (572), Expect = 3e-75
 Identities = 123/166 (74%), Positives = 141/166 (84%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MATR  FENS E+GVFSKLTN +CLVA+GGSE+FYS FEAEL D IP+V T+I G RIIG
Sbjct: 1   MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           R+  GN+ GLL+P  TTDQELQHLRNSLPD V +QR+EERLSALGN I CND+VAL H D
Sbjct: 61  RMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPD 120

Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRIS 166
           +DRETEE+I+DVLGVEVFRQTI+GNILVGSYCS SN+GGLV  + S
Sbjct: 121 IDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTS 166

>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B Length = 224

 Score = 62.3 bits (151), Expect = 2e-12
 Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 2/107 (1%)

Query: 31  SESFYSTFEAELADV--IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSL 88
                   E  ++DV  + V + +I GN ++G  C  +  G L+   T+ Q+ + L + L
Sbjct: 118 HPDIDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLL 177

Query: 89  PDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGV 135
              +V   +    S +G  +  ND++A+   D       +I  +  +
Sbjct: 178 QVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRL 224

>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B Length = 224

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 2/69 (2%)

Query: 102 SALGNCIACNDHVALAHTDLDRETEEIIADVLG--VEVFRQTIAGNILVGSYCSFSNRGG 159
           + +G      +   L                LG  + +   TIAG  ++G   + + RG 
Sbjct: 11  NEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGL 70

Query: 160 LVRHRISSS 168
           LV  + +  
Sbjct: 71  LVPTQTTDQ 79

>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J Length = 248

 Score =  221 bits (563), Expect = 1e-73
 Identities = 110/166 (66%), Positives = 134/166 (80%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MA R  FENS ++GVF KLT+A+CLV++G SE+FYS FE+EL   IPV+ TSIGG RI+G
Sbjct: 4   MARRCQFENSNDIGVFCKLTSAYCLVSVGASENFYSVFESELVPHIPVIHTSIGGTRIVG 63

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           R+  GNKNGLL+P+T  D EL+++RNSLPD V V+RIEE+LSALGNC+  ND+VAL H D
Sbjct: 64  RVTCGNKNGLLVPNTCNDNELRNIRNSLPDNVRVRRIEEKLSALGNCVVANDYVALIHPD 123

Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRIS 166
           LDRE+EEIIAD LGVEVFR TIA N+LVG+YC  +NRGGLV    S
Sbjct: 124 LDRESEEIIADTLGVEVFRTTIANNVLVGTYCVINNRGGLVHPLAS 169

>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J Length = 248

 Score = 63.5 bits (154), Expect = 9e-13
 Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 2/108 (1%)

Query: 31  SESFYSTFEAELADV--IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSL 88
                   E  +AD   + V +T+I  N ++G  CV N  G L+    + +EL  L N L
Sbjct: 121 HPDLDRESEEIIADTLGVEVFRTTIANNVLVGTYCVINNRGGLVHPLASVEELDELANLL 180

Query: 89  PDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVE 136
              +    I      +G  +  ND  A    D       ++ ++  + 
Sbjct: 181 QIPLCAGTINRGSDVIGAGLVVNDWAAFCGLDTTSTEISVVENIFKLN 228

>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J Length = 248

 Score = 40.4 bits (94), Expect = 1e-04
 Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 2/69 (2%)

Query: 102 SALGNCIACNDHVALAHTDLDRETEEIIADVL--GVEVFRQTIAGNILVGSYCSFSNRGG 159
           + +G          L           +    L   + V   +I G  +VG     +  G 
Sbjct: 14  NDIGVFCKLTSAYCLVSVGASENFYSVFESELVPHIPVIHTSIGGTRIVGRVTCGNKNGL 73

Query: 160 LVRHRISSS 168
           LV +  + +
Sbjct: 74  LVPNTCNDN 82

>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 222

 Score =  204 bits (521), Expect = 1e-67
 Identities = 54/168 (32%), Positives = 88/168 (52%), Gaps = 5/168 (2%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           M  R+    +  +GV+  +T++  L+     E F       L   + V+K SI G+ + G
Sbjct: 1   MIRRINLSGNPNLGVYISVTDSVALIPQNTPEKFEGVLREALE--VEVLKVSISGSSLNG 58

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
            L VGN NG ++ +   D+E+  L  +  +     RI ER +A+GN +  ND+ A+A   
Sbjct: 59  ALAVGNSNGFVVSNQAMDREIDALAAAGVE---AVRIPERFTAVGNLVLANDNGAVASPL 115

Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRISSS 168
           L  +  ++I DVL V+V   T+AG  +VGS  + +NRG L+  + SS 
Sbjct: 116 LSDDALQVIGDVLEVDVKVSTLAGLNIVGSMGAATNRGALLNPQASSE 163

>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 222

 Score = 50.3 bits (120), Expect = 3e-08
 Identities = 20/107 (18%), Positives = 41/107 (38%), Gaps = 2/107 (1%)

Query: 31  SESFYSTFEAELADV--IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSL 88
           S          + DV  + V  +++ G  I+G +      G LL    + +E+  + ++L
Sbjct: 113 SPLLSDDALQVIGDVLEVDVKVSTLAGLNIVGSMGAATNRGALLNPQASSEEIGIIEDTL 172

Query: 89  PDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGV 135
             +  V  +   ++ +G C   N +  L   +        I + LG 
Sbjct: 173 GVEADVGTVNHGVTLIGACSVANSNGVLVGEETTGPELARIEEALGF 219

>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1 Length = 228

 Score =  203 bits (518), Expect = 4e-67
 Identities = 55/169 (32%), Positives = 82/169 (48%), Gaps = 6/169 (3%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           M  R  F     +GV +  T    L+ I   +   +     L      ++T+IGG+ ++G
Sbjct: 3   MIIRKYFSGIPTIGVLALTTEEITLLPIFLDKDDVNEVSEVLE--TKCLQTNIGGSSLVG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQ---VVVQRIEERLSALGNCIACNDHVALA 117
            L V NK GLLLP    D+EL  ++N L +    + V+ I+ + +ALGN I  ND  AL 
Sbjct: 61  SLSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALI 120

Query: 118 HTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRIS 166
             +L  + ++ I D L VEV   TIA    VGS    +N+G L    + 
Sbjct: 121 SPELK-DFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNKGCLTHPLVE 168

>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1 Length = 228

 Score = 49.2 bits (117), Expect = 1e-07
 Identities = 14/67 (20%), Positives = 28/67 (41%)

Query: 102 SALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLV 161
             +G      + + L    LD++    +++VL  +  +  I G+ LVGS    +  G L+
Sbjct: 13  PTIGVLALTTEEITLLPIFLDKDDVNEVSEVLETKCLQTNIGGSSLVGSLSVANKYGLLL 72

Query: 162 RHRISSS 168
              +   
Sbjct: 73  PKIVEDE 79

>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1 Length = 228

 Score = 46.9 bits (111), Expect = 7e-07
 Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 3/89 (3%)

Query: 35  YSTFEAELADV--IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLP-DQ 91
              F+ ++ D   + V   +I     +G   V    G L      D EL+ L++    + 
Sbjct: 124 LKDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLFKVEY 183

Query: 92  VVVQRIEERLSALGNCIACNDHVALAHTD 120
           +      +  +++G CI  N   A+   D
Sbjct: 184 IGKGTANKGTTSVGACIIANSKGAVVGGD 212

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	183
4adx_I	222	AIF6; ribosome, protein synthesis; 6.60A {Methanot	100.0
4a18_J	248	EIF6, translation initiation factor EIF-6, putativ	100.0
1g62_A	224	Ribosome anti-association factor EIF6; alpha-beta	100.0
4adx_I	222	AIF6; ribosome, protein synthesis; 6.60A {Methanot	100.0
1g61_A	228	EIF-6, translation initiation factor 6; alpha-beta	100.0
1g62_A	224	Ribosome anti-association factor EIF6; alpha-beta	100.0
4a18_J	248	EIF6, translation initiation factor EIF-6, putativ	100.0
1g61_A	228	EIF-6, translation initiation factor 6; alpha-beta	99.95

>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=100.00  E-value=1.7e-54  Score=361.52  Aligned_cols=175  Identities=21%  Similarity=0.239  Sum_probs=166.3

Q ss_pred             ceEEeeeCccceeeEEEeeCCEEEEcCCCChhHHHHHHHHhCCcccEEEEeecCceEEEeEEEeeCCeEEeCCCCCHHHH
Q 030052            2 ATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQEL   81 (183)
Q Consensus         2 ~~~~~i~gs~~iG~~~~~Nd~~~Lvp~~i~~~~~~~i~~~L~~~v~vv~~~i~~s~~vG~li~~N~~G~lV~~~~~~~e~   81 (183)
                      ++|++|+||++||+|+++||+++|+|+.+++++++.|++ ++  |++.+++ ++++++||++++||+|+||||.++++|+
T Consensus        46 ii~~si~Gs~~IG~~~~~N~~gllvp~~~~d~e~~~l~~-~~--v~V~~~~-~~~~alGnli~~Nd~galV~~~~~~ee~  121 (222)
T 4adx_I           46 VLKVSISGSSLNGALAVGNSNGFVVSNQAMDREIDALAA-AG--VEAVRIP-ERFTAVGNLVLANDNGAVASPLLSDDAL  121 (222)
T ss_pred             EEEEEecCCcceeEEEEecCCEEEECCCCCHHHHHHHHh-cC--CeEEEEC-CCcceeEEEEEEcCceEEECCcCCHHHH
Confidence            489999999999999999999999999999999999999 47  8898888 9999999999999999999999999999


Q ss_pred             HHHHhhCCCCeEEEEecCCccceeeEEEEeCceeEEccCCCHHHHHHHHhhhCeeEEEEee-cCcccceeEEEEcCceEE
Q 030052           82 QHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTI-AGNILVGSYCSFSNRGGL  160 (183)
Q Consensus        82 ~~i~~~L~~~v~v~~~~~~~~avGn~ivaNd~galv~p~~s~~el~~I~dvL~Vev~~gti-~G~~~VGs~~vann~G~l  160 (183)
                      +.|+|.|++++...++ ++++++||.+++||+||||||+++++|+++|+|+||||+.+||+ +|.|+|||++||||+|++
T Consensus       122 e~I~d~L~VeV~~~~i-~~~~avGn~~v~nn~G~lVhP~~s~ee~~~i~~~L~V~v~~GTvn~G~~~VGsg~VaN~~G~l  200 (222)
T 4adx_I          122 QVIGDVLEVDVKVSTL-AGLNIVGSMGAATNRGALLNPQASSEEIGIIEDTLGVEADVGTVNHGVTLIGACSVANSNGVL  200 (222)
T ss_pred             HHHHHhhCccEEEEec-CCccceEEEEEEeCceEEECCCCCHHHHHHHHHHhCCCEEEeeecCCCCceeEEEEEeCCEEE
Confidence            9999999855544444 67999999999999999999999999999999999999999999 799999999999999999


Q ss_pred             ecCCCCHHHHHHHHHhhcccc
Q 030052          161 VRHRISSSRHLLKHFLLQCIS  181 (183)
Q Consensus       161 V~~~tt~~El~~i~~~l~~~~  181 (183)
                      |||+||++||+|||++|+|+.
T Consensus       201 vg~~TT~~El~~ie~~f~~~~  221 (222)
T 4adx_I          201 VGEETTGPELARIEEALGFLE  221 (222)
T ss_pred             ECCCCCHHHHHHHHHHhcccc
Confidence            999999999999999999974

>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J

Probab=100.00  E-value=2.8e-53  Score=358.14  Aligned_cols=180  Identities=63%  Similarity=0.974  Sum_probs=177.5

Q ss_pred             CceEEeeeCccceeeEEEeeCCEEEEcCCCChhHHHHHHHHhCCcccEEEEeecCceEEEeEEEeeCCeEEeCCCCCHHH
Q 030052            1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE   80 (183)
Q Consensus         1 m~~~~~i~gs~~iG~~~~~Nd~~~Lvp~~i~~~~~~~i~~~L~~~v~vv~~~i~~s~~vG~li~~N~~G~lV~~~~~~~e   80 (183)
                      |+.|++|+||++||+|+++||+|||+|++.+++.++.|++.|+..+++++++|++++++|.|++||+||+|||+.++|+|
T Consensus         4 M~~r~~~~gs~~IGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~GN~nGllvp~~~~d~E   83 (248)
T 4a18_J            4 MARRCQFENSNDIGVFCKLTSAYCLVSVGASENFYSVFESELVPHIPVIHTSIGGTRIVGRVTCGNKNGLLVPNTCNDNE   83 (248)
T ss_dssp             CEEEECBTTBSCGGGTEEEETTEEEEETTCCHHHHHHHHHHHTTTSCEEEECSSSCSCHHHHCEEETTEEEECTTCCHHH
T ss_pred             ceEEEeecCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhcCCccEEEEEecCcceEEEEEEecCCeEEeCCcCCHHH
Confidence            89999999999999999999999999999999999999999998899999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCeEEEEecCCccceeeEEEEeCceeEEccCCCHHHHHHHHhhhCeeEEEEeecCcccceeEEEEcCceEE
Q 030052           81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGL  160 (183)
Q Consensus        81 ~~~i~~~L~~~v~v~~~~~~~~avGn~ivaNd~galv~p~~s~~el~~I~dvL~Vev~~gti~G~~~VGs~~vann~G~l  160 (183)
                      +++|+++|+.++++.+++.+++|+||.++|||++||+||+++++..+.|+|+|||||+++||+|.++|||.+++||+|+|
T Consensus        84 l~~l~~~l~~~v~v~~~~~r~~alGn~i~aND~~ALV~pdl~~e~~e~I~d~LgVeV~~~tIags~lVGs~~v~Nn~G~L  163 (248)
T 4a18_J           84 LRNIRNSLPDNVRVRRIEEKLSALGNCVVANDYVALIHPDLDRESEEIIADTLGVEVFRTTIANNVLVGTYCVINNRGGL  163 (248)
T ss_dssp             HHHHHHHSCTTSEEEECCCSSCCHHHHEEECSSEEEECSSCCHHHHHHHHHHHTCEEEECCBTTBSCHHHHEEECSSCEE
T ss_pred             HHHHHhhCCCCceEEEeCCccccceEEEEEcCcEEEECCCCCHHHHHHHHHhcCCcEEEEEcCCcceeEEEEEEeCCeEE
Confidence            99999999988999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCHHHHHHHHHhhccc
Q 030052          161 VRHRISSSRHLLKHFLLQCI  180 (183)
Q Consensus       161 V~~~tt~~El~~i~~~l~~~  180 (183)
                      |||+++++|+++|+++|++-
T Consensus       164 Vhp~~s~eEl~~L~~~l~V~  183 (248)
T 4a18_J          164 VHPLASVEELDELANLLQIP  183 (248)
T ss_dssp             ECTTCCHHHHHHHHHHHTSC
T ss_pred             ECCCCCHHHHHHHHHHhCCc
Confidence            99999999999999999864

>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B

Probab=100.00  E-value=4.5e-53  Score=352.66  Aligned_cols=180  Identities=70%  Similarity=1.067  Sum_probs=177.5

Q ss_pred             CceEEeeeCccceeeEEEeeCCEEEEcCCCChhHHHHHHHHhCCcccEEEEeecCceEEEeEEEeeCCeEEeCCCCCHHH
Q 030052            1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE   80 (183)
Q Consensus         1 m~~~~~i~gs~~iG~~~~~Nd~~~Lvp~~i~~~~~~~i~~~L~~~v~vv~~~i~~s~~vG~li~~N~~G~lV~~~~~~~e   80 (183)
                      |+.|++|+||++||+|+++||+|||+|++.+++.++.|++.|+..+++++++|++|+++|.|++||+||+|||+.++|+|
T Consensus         1 m~~r~~~~gs~~IGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~gN~nGllvp~~~~d~E   80 (224)
T 1g62_A            1 MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQE   80 (224)
T ss_dssp             CEEEECBTTBCCHHHHEEECSSCEEEETTCCHHHHHHHHHHHTTTSCEEEECBTTBSCHHHHCEECSSEEEEETTCCHHH
T ss_pred             CceEEEecCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhccCccEEEEEecCcceEEEEEEecCceEEcCCcCCHHH
Confidence            99999999999999999999999999999999999999999998899999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCeEEEEecCCccceeeEEEEeCceeEEccCCCHHHHHHHHhhhCeeEEEEeecCcccceeEEEEcCceEE
Q 030052           81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGL  160 (183)
Q Consensus        81 ~~~i~~~L~~~v~v~~~~~~~~avGn~ivaNd~galv~p~~s~~el~~I~dvL~Vev~~gti~G~~~VGs~~vann~G~l  160 (183)
                      +++|+++|+.+++|.+++.+++++||.++|||++||+||+++++..+.|+|+|||||+++||+|.++|||.+++||||+|
T Consensus        81 l~~l~~~l~~~v~V~~~~~~~~aiGn~i~~ND~~alV~p~l~~e~~~~i~d~L~VeV~~~tIag~~lVGs~~v~nn~G~L  160 (224)
T 1g62_A           81 LQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGL  160 (224)
T ss_dssp             HHHHHHHSCTTSEEEEECCCSSCHHHHEEECSSEEEECTTCCHHHHHHHHHHHTSEEEECCBTTBSCGGGSEEECSSCEE
T ss_pred             HHHHHhhCCCCceEEEECCcCcceeEEEEEcCcEEEECCCCCHHHHHHHHHhhCCcEEEEEecCcceEEEEEEEeCcEEE
Confidence            99999999988999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCHHHHHHHHHhhccc
Q 030052          161 VRHRISSSRHLLKHFLLQCI  180 (183)
Q Consensus       161 V~~~tt~~El~~i~~~l~~~  180 (183)
                      |||+++++|+++|+++|++-
T Consensus       161 VhP~~s~ee~~~i~d~L~V~  180 (224)
T 1g62_A          161 VHPQTSVQDQEELSSLLQVP  180 (224)
T ss_dssp             ECTTCCHHHHHHHHHHHTSC
T ss_pred             ECCCCCHHHHHHHHHHhCCc
Confidence            99999999999999999863

>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=100.00  E-value=2.9e-50  Score=335.87  Aligned_cols=175  Identities=32%  Similarity=0.472  Sum_probs=171.1

Q ss_pred             CceEEeeeCccceeeEEEeeCCEEEEcCCCChhHHHHHHHHhCCcccEEEEeecCceEEEeEEEeeCCeEEeCCCCCHHH
Q 030052            1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE   80 (183)
Q Consensus         1 m~~~~~i~gs~~iG~~~~~Nd~~~Lvp~~i~~~~~~~i~~~L~~~v~vv~~~i~~s~~vG~li~~N~~G~lV~~~~~~~e   80 (183)
                      |+.|++|+||++||+|+++||+|||+|++.+++.++.+++.|+  ++++++++++++.+|.|+++|+||+|||+.++++|
T Consensus         1 m~~r~~~~gs~~iGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~--v~ii~~si~Gs~~IG~~~~~N~~gllvp~~~~d~e   78 (222)
T 4adx_I            1 MIRRINLSGNPNLGVYISVTDSVALIPQNTPEKFEGVLREALE--VEVLKVSISGSSLNGALAVGNSNGFVVSNQAMDRE   78 (222)
T ss_pred             CcEEEEecCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhC--CcEEEEEecCCcceeEEEEecCCEEEECCCCCHHH
Confidence            9999999999999999999999999999999999999999999  99999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCeEEEEecCCccceeeEEEEeCceeEEccCCCHHHHHHHHhhhCeeEEEEeecCcccceeEEEEcCceEE
Q 030052           81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGL  160 (183)
Q Consensus        81 ~~~i~~~L~~~v~v~~~~~~~~avGn~ivaNd~galv~p~~s~~el~~I~dvL~Vev~~gti~G~~~VGs~~vann~G~l  160 (183)
                      +++|++.   ++++.+++++++++||+++|||+||++||+++++|++.|+|+|||+|+++++++.+.|||.+++||||+|
T Consensus        79 ~~~l~~~---~v~V~~~~~~~~alGnli~~Nd~galV~~~~~~ee~e~I~d~L~VeV~~~~i~~~~avGn~~v~nn~G~l  155 (222)
T 4adx_I           79 IDALAAA---GVEAVRIPERFTAVGNLVLANDNGAVASPLLSDDALQVIGDVLEVDVKVSTLAGLNIVGSMGAATNRGAL  155 (222)
T ss_pred             HHHHHhc---CCeEEEECCCcceeEEEEEEcCceEEECCcCCHHHHHHHHHhhCccEEEEecCCccceEEEEEEeCceEE
Confidence            9999994   4888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCHHHHHHHHHhhccc
Q 030052          161 VRHRISSSRHLLKHFLLQCI  180 (183)
Q Consensus       161 V~~~tt~~El~~i~~~l~~~  180 (183)
                      |||++|++|+++|+++||+-
T Consensus       156 VhP~~s~ee~~~i~~~L~V~  175 (222)
T 4adx_I          156 LNPQASSEEIGIIEDTLGVE  175 (222)
T ss_pred             ECCCCCHHHHHHHHHHhCCC
Confidence            99999999999999999863

>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1

Probab=100.00  E-value=8.4e-52  Score=346.28  Aligned_cols=178  Identities=28%  Similarity=0.390  Sum_probs=166.6

Q ss_pred             CceEEeeeCccceeeEEEeeCCEEEEcCCCChhHHHHHHHHhCCcccEEEEeecCceEEEeEEEeeCCeEEeCCCCCHHH
Q 030052            1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE   80 (183)
Q Consensus         1 m~~~~~i~gs~~iG~~~~~Nd~~~Lvp~~i~~~~~~~i~~~L~~~v~vv~~~i~~s~~vG~li~~N~~G~lV~~~~~~~e   80 (183)
                      |+.|++|+||++||+|+++||+|||+|++.+++.++.|++.|+  ++++++++++++.+|.|+++|++|+|||+.++++|
T Consensus         3 m~~r~~~~gs~~iGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~--v~vv~~si~gs~~IGv~~~gN~~gllvp~~~~d~e   80 (228)
T 1g61_A            3 MIIRKYFSGIPTIGVLALTTEEITLLPIFLDKDDVNEVSEVLE--TKCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEE   80 (228)
T ss_dssp             CEEEECBTTBCCHHHHCEECSSEEEECTTCCHHHHHHHHHHHT--CEEEECCBTTBSCHHHHCEECSSEEEEETTCCHHH
T ss_pred             ceeEEEEcCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhC--CcEEEEEecCCccEEEEEEecCCEEEECCCCCHHH
Confidence            8899999999999999999999999999999999999999999  99999999999999999999999999999999999


Q ss_pred             HHHHHhhC---CCCeEEEEecCCccceeeEEE-------------------------------------------EeCce
Q 030052           81 LQHLRNSL---PDQVVVQRIEERLSALGNCIA-------------------------------------------CNDHV  114 (183)
Q Consensus        81 ~~~i~~~L---~~~v~v~~~~~~~~avGn~iv-------------------------------------------aNd~g  114 (183)
                      ++.|++.|   +.++++.+++++.+++||+++                                           ++|+|
T Consensus        81 ~~~i~~~L~~~~~~v~V~~v~~~~~alGnli~~Nd~galV~~el~~~~~~i~d~L~veV~~~~i~~~~tvg~n~v~tN~G  160 (228)
T 1g61_A           81 LDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALISPELKDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNKG  160 (228)
T ss_dssp             HHHHHHHHHHTTCCCEEEEECCSSCCHHHHEEECSSEEEECGGGGGGHHHHHHHHCSEEEECCBTTBSCTTTSEEECSSE
T ss_pred             HHHHHHHhhccCCCceEEEEcCCCcceEEEEEecCccEEeCHHHHHHHHHHHHhcCCceEEEEeCCccceeeEEEEecce
Confidence            99999987   456777777777777777774                                           34488


Q ss_pred             eEEccCCCHHHHHHHHhhhCee-EEEEee-cCcccceeEEEEcCceEEecCCCCHHHHHHHHHhhccc
Q 030052          115 ALAHTDLDRETEEIIADVLGVE-VFRQTI-AGNILVGSYCSFSNRGGLVRHRISSSRHLLKHFLLQCI  180 (183)
Q Consensus       115 alv~p~~s~~el~~I~dvL~Ve-v~~gti-~G~~~VGs~~vann~G~lV~~~tt~~El~~i~~~l~~~  180 (183)
                      |||||+++++|+++|+|+|||| +.+||+ +|.|+||||+||||+|++|||+||++|+++||++|+++
T Consensus       161 ~LVhP~~s~ee~~~i~d~L~V~~v~~GTvn~G~~~VGsg~VaNn~G~lvg~~TT~~El~~Ie~~f~v~  228 (228)
T 1g61_A          161 CLTHPLVEDDELEFLKSLFKVEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELLIIEDALGLI  228 (228)
T ss_dssp             EEECTTCCHHHHHHHHHHHTCSEEEECCBTTTBSCGGGTEEECSSCEEEETTCCHHHHHHHHHHHTC-
T ss_pred             EEECCCCCHHHHHHHHHhcCCCeEeeeeeeCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHHhccC
Confidence            8889999999999999999999 999999 69999999999999999999999999999999999975

>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B

Probab=100.00  E-value=6.7e-47  Score=315.48  Aligned_cols=173  Identities=14%  Similarity=0.142  Sum_probs=162.4

Q ss_pred             ceEEeeeCccceeeEEEeeCCEEEEcCCCChhHHHHHHHHhCCc--ccEEEEeecCceEEEeEEEeeCCeEEeCCCCCHH
Q 030052            2 ATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADV--IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQ   79 (183)
Q Consensus         2 ~~~~~i~gs~~iG~~~~~Nd~~~Lvp~~i~~~~~~~i~~~L~~~--v~vv~~~i~~s~~vG~li~~N~~G~lV~~~~~~~   79 (183)
                      +++++|+||+.+|.|+++|++++|+|+.+.++|++.||+.|...  |.+++   .+.+++|+++++||+++||||.++++
T Consensus        48 vv~tsI~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~v~V~~~~---~~~~aiGn~i~~ND~~alV~p~l~~e  124 (224)
T 1g62_A           48 IVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVE---ERLSALGNVICCNDYVALVHPDIDRE  124 (224)
T ss_dssp             EEEECBTTBSCHHHHCEECSSEEEEETTCCHHHHHHHHHHSCTTSEEEEEC---CCSSCHHHHEEECSSEEEECTTCCHH
T ss_pred             EEEEEecCcceEEEEEEecCceEEcCCcCCHHHHHHHHhhCCCCceEEEEC---CcCcceeEEEEEcCcEEEECCCCCHH
Confidence            37899999999999999999999999999999999999986433  44555   45599999999999999999999999


Q ss_pred             HHHHHHhhCCCCeEEEEec-CCccceeeEEEEeCceeEEccCCCHHHHHHHHhhhCeeEEEEee-cCcccceeEEEEcCc
Q 030052           80 ELQHLRNSLPDQVVVQRIE-ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTI-AGNILVGSYCSFSNR  157 (183)
Q Consensus        80 e~~~i~~~L~~~v~v~~~~-~~~~avGn~ivaNd~galv~p~~s~~el~~I~dvL~Vev~~gti-~G~~~VGs~~vann~  157 (183)
                      ..+.|+|.|+  |++.+.+ ++...+|+..++||+||||||+++++|+++|+|+||||+.+||+ +|.++|||++||||+
T Consensus       125 ~~~~i~d~L~--VeV~~~tIag~~lVGs~~v~nn~G~LVhP~~s~ee~~~i~d~L~V~v~~gTvN~G~~~VGs~~vann~  202 (224)
T 1g62_A          125 TEELISDVLG--VEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVGAGMVVNDY  202 (224)
T ss_dssp             HHHHHHHHHT--SEEEECCBTTBSCGGGSEEECSSCEEECTTCCHHHHHHHHHHHTSCEEECCBTTTBSCHHHHEEECSS
T ss_pred             HHHHHHHhhC--CcEEEEEecCcceEEEEEEEeCcEEEECCCCCHHHHHHHHHHhCCcEEEEEEcCCCCceeEEEEEECC
Confidence            9999999997  7777776 99999999999999999999999999999999999999999999 999999999999999


Q ss_pred             eEEecCCCCHHHHHHHHHhhcc
Q 030052          158 GGLVRHRISSSRHLLKHFLLQC  179 (183)
Q Consensus       158 G~lV~~~tt~~El~~i~~~l~~  179 (183)
                      |++|||+||++|+++||++|++
T Consensus       203 G~lvg~~TT~~El~~Ie~~f~v  224 (224)
T 1g62_A          203 LAVTGLDTTAPELSVIESIFRL  224 (224)
T ss_dssp             CEEEETTCCHHHHHHHHHHTTC
T ss_pred             EEEECCCCCHHHHHHHHHHhCc
Confidence            9999999999999999999985

>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J

Probab=100.00  E-value=1.1e-44  Score=305.65  Aligned_cols=174  Identities=15%  Similarity=0.133  Sum_probs=163.0

Q ss_pred             eEEeeeCccceeeEEEeeCCEEEEcCCCChhHHHHHHHHhCCcc--cEEEEeecCceEEEeEEEeeCCeEEeCCCCCHHH
Q 030052            3 TRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVI--PVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE   80 (183)
Q Consensus         3 ~~~~i~gs~~iG~~~~~Nd~~~Lvp~~i~~~~~~~i~~~L~~~v--~vv~~~i~~s~~vG~li~~N~~G~lV~~~~~~~e   80 (183)
                      ++++|+||+.+|.|+++|++++|||+.+.++|++.||+.|+..+  .+++   .+.+++||++++||+++||||.++++.
T Consensus        52 v~tsI~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~l~~~v~v~~~~---~r~~alGn~i~aND~~ALV~pdl~~e~  128 (248)
T 4a18_J           52 IHTSIGGTRIVGRVTCGNKNGLLVPNTCNDNELRNIRNSLPDNVRVRRIE---EKLSALGNCVVANDYVALIHPDLDRES  128 (248)
T ss_dssp             EEECSSSCSCHHHHCEEETTEEEECTTCCHHHHHHHHHHSCTTSEEEECC---CSSCCHHHHEEECSSEEEECSSCCHHH
T ss_pred             EEEEecCcceEEEEEEecCCeEEeCCcCCHHHHHHHHhhCCCCceEEEeC---CccccceEEEEEcCcEEEECCCCCHHH
Confidence            78999999999999999999999999999999999999985334  4555   455999999999999999999999999


Q ss_pred             HHHHHhhCCCCeEEEEec-CCccceeeEEEEeCceeEEccCCCHHHHHHHHhhhCeeEEEEee-cCcccceeEEEEcCce
Q 030052           81 LQHLRNSLPDQVVVQRIE-ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTI-AGNILVGSYCSFSNRG  158 (183)
Q Consensus        81 ~~~i~~~L~~~v~v~~~~-~~~~avGn~ivaNd~galv~p~~s~~el~~I~dvL~Vev~~gti-~G~~~VGs~~vann~G  158 (183)
                      .+.|+|.|+  |++.+.+ ++.+.+|+.+++||+|+||||.++++|+++|+++|+|++.+||+ +|.++|||+++|||+|
T Consensus       129 ~e~I~d~Lg--VeV~~~tIags~lVGs~~v~Nn~G~LVhp~~s~eEl~~L~~~l~V~v~~gTvN~G~~~VGsgivaNd~G  206 (248)
T 4a18_J          129 EEIIADTLG--VEVFRTTIANNVLVGTYCVINNRGGLVHPLASVEELDELANLLQIPLCAGTINRGSDVIGAGLVVNDWA  206 (248)
T ss_dssp             HHHHHHHHT--CEEEECCBTTBSCHHHHEEECSSCEEECTTCCHHHHHHHHHHHTSCEEECCBTTTBSCHHHHEEEETTE
T ss_pred             HHHHHHhcC--CcEEEEEcCCcceeEEEEEEeCCeEEECCCCCHHHHHHHHHHhCCceEEEeecCCCccceEEEEEeCCe
Confidence            999999997  6676666 99999999999999999999999999999999999999999999 9999999999999999


Q ss_pred             EEecCCCCHHHHHHHHHhhcccc
Q 030052          159 GLVRHRISSSRHLLKHFLLQCIS  181 (183)
Q Consensus       159 ~lV~~~tt~~El~~i~~~l~~~~  181 (183)
                      ++|||+||++|+++||++|++..
T Consensus       207 alVg~~tT~~El~~Ie~~l~v~~  229 (248)
T 4a18_J          207 AFCGLDTTSTEISVVENIFKLNE  229 (248)
T ss_dssp             EEEETTCCHHHHHHHHHHTTCC-
T ss_pred             EEECCCCCHHHHHHHHHHhCCCC
Confidence            99999999999999999999864

>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1

Probab=99.95  E-value=4.2e-29  Score=208.90  Aligned_cols=125  Identities=21%  Similarity=0.267  Sum_probs=118.4

Q ss_pred             eCccceeeEEEeeCCEEEEcCCCChhHHHHHHHHhCCcccEEEEeecCceEEEeEEEeeCCeEEeCCCCCHHHHHHHHhh
Q 030052            8 ENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNS   87 (183)
Q Consensus         8 ~gs~~iG~~~~~Nd~~~Lvp~~i~~~~~~~i~~~L~~~v~vv~~~i~~s~~vG~li~~N~~G~lV~~~~~~~e~~~i~~~   87 (183)
                      .+++.+|+++++||+++|+||++ ++..+.|+|+|+  +++.+.++++...+|..++.+|+|+||||.++++|++.|++.
T Consensus       102 ~~~~alGnli~~Nd~galV~~el-~~~~~~i~d~L~--veV~~~~i~~~~tvg~n~v~tN~G~LVhP~~s~ee~~~i~d~  178 (228)
T 1g61_A          102 SKNTALGNLILTNDKGALISPEL-KDFKKDIEDSLN--VEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSL  178 (228)
T ss_dssp             CSSCCHHHHEEECSSEEEECGGG-GGGHHHHHHHHC--SEEEECCBTTBSCTTTSEEECSSEEEECTTCCHHHHHHHHHH
T ss_pred             CCCcceEEEEEecCccEEeCHHH-HHHHHHHHHhcC--CceEEEEeCCccceeeEEEEecceEEECCCCCHHHHHHHHHh
Confidence            48999999999999999999999 899999999999  999998898888888888888899999999999999999999


Q ss_pred             CCCC-eEEEEecCCccceeeEEEEeCceeEEccCCCHHHHHHHHhhhCe
Q 030052           88 LPDQ-VVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGV  135 (183)
Q Consensus        88 L~~~-v~v~~~~~~~~avGn~ivaNd~galv~p~~s~~el~~I~dvL~V  135 (183)
                      |+++ +..++++.+.+.+|+.++|||||++|||++|++|+++|+++|||
T Consensus       179 L~V~~v~~GTvn~G~~~VGsg~VaNn~G~lvg~~TT~~El~~Ie~~f~v  227 (228)
T 1g61_A          179 FKVEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELLIIEDALGL  227 (228)
T ss_dssp             HTCSEEEECCBTTTBSCGGGTEEECSSCEEEETTCCHHHHHHHHHHHTC
T ss_pred             cCCCeEeeeeeeCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHHhcc
Confidence            9988 77788888999999999999999999999999999999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	183
d1g62a_	224	d.126.1.1 (A:) Ribosome anti-association factor eI	2e-85
d1g62a_	224	d.126.1.1 (A:) Ribosome anti-association factor eI	1e-07
d1g61a_	225	d.126.1.1 (A:) Ribosome anti-association factor eI	2e-75
d1g61a_	225	d.126.1.1 (A:) Ribosome anti-association factor eI	7e-07

>d1g62a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  248 bits (636), Expect = 2e-85
 Identities = 123/168 (73%), Positives = 141/168 (83%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           MATR  FENS E+GVFSKLTN +CLVA+GGSE+FYS FEAEL D IP+V T+I G RIIG
Sbjct: 1   MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIG 60

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTD 120
           R+  GN+ GLL+P  TTDQELQHLRNSLPD V +QR+EERLSALGN I CND+VAL H D
Sbjct: 61  RMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPD 120

Query: 121 LDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRISSS 168
           +DRETEE+I+DVLGVEVFRQTI+GNILVGSYCS SN+GGLV  + S  
Sbjct: 121 IDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQ 168

>d1g62a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.4 bits (113), Expect = 1e-07
 Identities = 19/75 (25%), Positives = 37/75 (49%)

Query: 46  IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALG 105
           + V + +I GN ++G  C  +  G L+   T+ Q+ + L + L   +V   +    S +G
Sbjct: 135 VEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVG 194

Query: 106 NCIACNDHVALAHTD 120
             +  ND++A+   D
Sbjct: 195 AGMVVNDYLAVTGLD 209

>d1g61a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 225

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  223 bits (570), Expect = 2e-75
 Identities = 55/171 (32%), Positives = 83/171 (48%), Gaps = 6/171 (3%)

Query: 1   MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIG 60
           M  R  F     +GV +  T    L+ I   +   +     L      ++T+IGG+ ++G
Sbjct: 1   MIIRKYFSGIPTIGVLALTTEEITLLPIFLDKDDVNEVSEVLE--TKCLQTNIGGSSLVG 58

Query: 61  RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQ---VVVQRIEERLSALGNCIACNDHVALA 117
            L V NK GLLLP    D+EL  ++N L +    + V+ I+ + +ALGN I  ND  AL 
Sbjct: 59  SLSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALI 118

Query: 118 HTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVRHRISSS 168
             +L ++ ++ I D L VEV   TIA    VGS    +N+G L    +   
Sbjct: 119 SPEL-KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDD 168

>d1g61a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 225

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 45.5 bits (108), Expect = 7e-07
 Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 3/88 (3%)

Query: 36  STFEAELADV--IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVV 93
             F+ ++ D   + V   +I     +G   V    G L      D EL+ L++    + +
Sbjct: 123 KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLFKVEYI 182

Query: 94  -VQRIEERLSALGNCIACNDHVALAHTD 120
                 +  +++G CI  N   A+   D
Sbjct: 183 GKGTANKGTTSVGACIIANSKGAVVGGD 210

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	183
d1g62a_	224	Ribosome anti-association factor eIF6 (aIF6) {Bake	100.0
d1g61a_	225	Ribosome anti-association factor eIF6 (aIF6) {Arch	100.0
d1g62a_	224	Ribosome anti-association factor eIF6 (aIF6) {Bake	100.0
d1g61a_	225	Ribosome anti-association factor eIF6 (aIF6) {Arch	100.0

>d1g62a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.1e-57  Score=372.70  Aligned_cols=180  Identities=70%  Similarity=1.067  Sum_probs=177.3

Q ss_pred             CceEEeeeCccceeeEEEeeCCEEEEcCCCChhHHHHHHHHhCCcccEEEEeecCceEEEeEEEeeCCeEEeCCCCCHHH
Q 030052            1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE   80 (183)
Q Consensus         1 m~~~~~i~gs~~iG~~~~~Nd~~~Lvp~~i~~~~~~~i~~~L~~~v~vv~~~i~~s~~vG~li~~N~~G~lV~~~~~~~e   80 (183)
                      |++|++|+||++||+|+++||+|||+|++.+++.++.+++.|+..+|+++++|++|+++|+|+++|+||+|||+.++|+|
T Consensus         1 M~~r~~f~gs~~IGVf~~~t~~~~lvp~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~liG~l~~GN~nGllvp~~~td~E   80 (224)
T d1g62a_           1 MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQE   80 (224)
T ss_dssp             CEEEECBTTBCCHHHHEEECSSCEEEETTCCHHHHHHHHHHHTTTSCEEEECBTTBSCHHHHCEECSSEEEEETTCCHHH
T ss_pred             CcEEEEecCCCceEEEEEEeCCEEEEcCCCCHHHHHHHHHHhccCCcEEEEEecCceeeeeeeecccCeEEeCCcCCHHH
Confidence            99999999999999999999999999999999999999999987799999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCeEEEEecCCccceeeEEEEeCceeEEccCCCHHHHHHHHhhhCeeEEEEeecCcccceeEEEEcCceEE
Q 030052           81 LQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGL  160 (183)
Q Consensus        81 ~~~i~~~L~~~v~v~~~~~~~~avGn~ivaNd~galv~p~~s~~el~~I~dvL~Vev~~gti~G~~~VGs~~vann~G~l  160 (183)
                      +++|++.|+.+++|.+++.+++|+||+|+|||+||++||++++++.|.|+|+||||++++||+|.++|||++|+||||+|
T Consensus        81 l~~L~~~l~d~v~V~~l~~~~~AlGN~I~~ND~~alv~p~l~~e~~e~I~dvL~Vev~~~tiag~~~VGs~~v~tn~G~L  160 (224)
T d1g62a_          81 LQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGL  160 (224)
T ss_dssp             HHHHHHHSCTTSEEEEECCCSSCHHHHEEECSSEEEECTTCCHHHHHHHHHHHTSEEEECCBTTBSCGGGSEEECSSCEE
T ss_pred             HHHHHhhCCCCcEEEEeCCCccccccEEEEcccceEecCCCCHHHHHHHHHHhCceEEEEEecCccceeeEEEEcCCcee
Confidence            99999999988999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCHHHHHHHHHhhccc
Q 030052          161 VRHRISSSRHLLKHFLLQCI  180 (183)
Q Consensus       161 V~~~tt~~El~~i~~~l~~~  180 (183)
                      |||++|++|+++|+++||+.
T Consensus       161 vhP~~t~~E~~~l~~~l~V~  180 (224)
T d1g62a_         161 VHPQTSVQDQEELSSLLQVP  180 (224)
T ss_dssp             ECTTCCHHHHHHHHHHHTSC
T ss_pred             ecCCCCHHHHHHHHHHhCCC
Confidence            99999999999999999873

>d1g61a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.2e-55  Score=365.92  Aligned_cols=177  Identities=32%  Similarity=0.396  Sum_probs=171.9

Q ss_pred             CceEEeeeCccceeeEEEeeCCEEEEcCCCChhHHHHHHHHhCCcccEEEEeecCceEEEeEEEeeCCeEEeCCCCCHHH
Q 030052            1 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE   80 (183)
Q Consensus         1 m~~~~~i~gs~~iG~~~~~Nd~~~Lvp~~i~~~~~~~i~~~L~~~v~vv~~~i~~s~~vG~li~~N~~G~lV~~~~~~~e   80 (183)
                      |+.|++|+||++||+|+++||+|||+|++.+++.++.|++.|+  +|+++++|++|+++|+|+++|+||+|||+.++|+|
T Consensus         1 Mi~r~~~~gs~~IGVy~~~t~~~~lvp~~~~~~~~~~i~~~L~--v~vv~tsI~gs~lvG~l~~GN~nGllvp~~~~d~E   78 (225)
T d1g61a_           1 MIIRKYFSGIPTIGVLALTTEEITLLPIFLDKDDVNEVSEVLE--TKCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEE   78 (225)
T ss_dssp             CEEEECBTTBCCHHHHCEECSSEEEECTTCCHHHHHHHHHHHT--CEEEECCBTTBSCHHHHCEECSSEEEEETTCCHHH
T ss_pred             CcEEEEecCCCceEEEEEEeCCEEEEcCCCCHHHHHHHHHhcC--CcEEEEEecCcceeeeEEeccCCeEEeCCcCCHHH
Confidence            9999999999999999999999999999999999999999999  99999999999999999999999999999999999


Q ss_pred             HHHHHhhCC---CCeEEEEecCCccceeeEEEEeCceeEEccCCCHHHHHHHHhhhCeeEEEEeecCcccceeEEEEcCc
Q 030052           81 LQHLRNSLP---DQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNR  157 (183)
Q Consensus        81 ~~~i~~~L~---~~v~v~~~~~~~~avGn~ivaNd~galv~p~~s~~el~~I~dvL~Vev~~gti~G~~~VGs~~vann~  157 (183)
                      +++|+++|+   .+++|.+++.+++|+||+|+|||+||++||+++ ++.|.|+|+|||||+++||+|.++|||++|+|||
T Consensus        79 l~~l~~~l~~~~~dv~V~~l~~~~nAlGN~I~~ND~~Alv~p~l~-e~~e~I~dvL~Vev~r~~iag~~~VGs~~v~tn~  157 (225)
T d1g61a_          79 LDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALISPELK-DFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNK  157 (225)
T ss_dssp             HHHHHHHHHHTTCCCEEEEECCSSCCHHHHEEECSSEEEECGGGG-GGHHHHHHHHCSEEEECCBTTBSCTTTSEEECSS
T ss_pred             HHHHHhhcccccCCceEEEeCCcccccccEEEEcCcceEeccccc-hHHHHHHHhhCceEEEEEeCCcccceeEEEEecc
Confidence            999999975   359999999999999999999999999999995 6789999999999999999999999999999999


Q ss_pred             eEEecCCCCHHHHHHHHHhhccc
Q 030052          158 GGLVRHRISSSRHLLKHFLLQCI  180 (183)
Q Consensus       158 G~lV~~~tt~~El~~i~~~l~~~  180 (183)
                      |+||||+||++|+++|+++||.-
T Consensus       158 G~LvhP~~s~~E~~~l~~~l~V~  180 (225)
T d1g61a_         158 GCLTHPLVEDDELEFLKSLFKVE  180 (225)
T ss_dssp             EEEECTTCCHHHHHHHHHHHTCS
T ss_pred             ceEECCCCCHHHHHHHHHHhCCC
Confidence            99999999999999999999973

>d1g62a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.8e-47  Score=315.26  Aligned_cols=172  Identities=14%  Similarity=0.145  Sum_probs=162.3

Q ss_pred             eEEeeeCccceeeEEEeeCCEEEEcCCCChhHHHHHHHHhCCc--ccEEEEeecCceEEEeEEEeeCCeEEeCCCCCHHH
Q 030052            3 TRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADV--IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQE   80 (183)
Q Consensus         3 ~~~~i~gs~~iG~~~~~Nd~~~Lvp~~i~~~~~~~i~~~L~~~--v~vv~~~i~~s~~vG~li~~N~~G~lV~~~~~~~e   80 (183)
                      ++++|+||+.+|.++++|++++|||..+.++|++.|++.|...  |.+++   .+.+++||++++||+|++|||.++++.
T Consensus        49 v~tsI~gs~liG~l~~GN~nGllvp~~~td~El~~L~~~l~d~v~V~~l~---~~~~AlGN~I~~ND~~alv~p~l~~e~  125 (224)
T d1g62a_          49 VHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVE---ERLSALGNVICCNDYVALVHPDIDRET  125 (224)
T ss_dssp             EEECBTTBSCHHHHCEECSSEEEEETTCCHHHHHHHHHHSCTTSEEEEEC---CCSSCHHHHEEECSSEEEECTTCCHHH
T ss_pred             EEEEecCceeeeeeeecccCeEEeCCcCCHHHHHHHHhhCCCCcEEEEeC---CCccccccEEEEcccceEecCCCCHHH
Confidence            7899999999999999999999999999999999999998433  44455   555999999999999999999999999


Q ss_pred             HHHHHhhCCCCeEEEEec-CCccceeeEEEEeCceeEEccCCCHHHHHHHHhhhCeeEEEEee-cCcccceeEEEEcCce
Q 030052           81 LQHLRNSLPDQVVVQRIE-ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTI-AGNILVGSYCSFSNRG  158 (183)
Q Consensus        81 ~~~i~~~L~~~v~v~~~~-~~~~avGn~ivaNd~galv~p~~s~~el~~I~dvL~Vev~~gti-~G~~~VGs~~vann~G  158 (183)
                      .+.|+|.|+  |++.+.+ ++...+|+..++||+|+|+||+++++|+++|+++|+|++..||+ +|.|+||||++||++|
T Consensus       126 ~e~I~dvL~--Vev~~~tiag~~~VGs~~v~tn~G~LvhP~~t~~E~~~l~~~l~V~~~~GTVN~Gs~~VgsGlvaN~~g  203 (224)
T d1g62a_         126 EELISDVLG--VEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVGAGMVVNDYL  203 (224)
T ss_dssp             HHHHHHHHT--SEEEECCBTTBSCGGGSEEECSSCEEECTTCCHHHHHHHHHHHTSCEEECCBTTTBSCHHHHEEECSSC
T ss_pred             HHHHHHHhC--ceEEEEEecCccceeeEEEEcCCceeecCCCCHHHHHHHHHHhCCCcccceeeCCCCCceeEEEEcCce
Confidence            999999997  7777777 99999999999999999999999999999999999999999999 9999999999999999


Q ss_pred             EEecCCCCHHHHHHHHHhhcc
Q 030052          159 GLVRHRISSSRHLLKHFLLQC  179 (183)
Q Consensus       159 ~lV~~~tt~~El~~i~~~l~~  179 (183)
                      ++||.+||++||.|||++|++
T Consensus       204 ~~vG~~TTg~El~~Ie~~~~l  224 (224)
T d1g62a_         204 AVTGLDTTAPELSVIESIFRL  224 (224)
T ss_dssp             EEEETTCCHHHHHHHHHHTTC
T ss_pred             EEEcCCCCcHHHHHHHHHhcC
Confidence            999999999999999999975

>d1g61a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=8e-47  Score=312.72  Aligned_cols=171  Identities=19%  Similarity=0.213  Sum_probs=159.9

Q ss_pred             eEEeeeCccceeeEEEeeCCEEEEcCCCChhHHHHHHHHh-----CCcccEEEEeecCceEEEeEEEeeCCeEEeCCCCC
Q 030052            3 TRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAEL-----ADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTT   77 (183)
Q Consensus         3 ~~~~i~gs~~iG~~~~~Nd~~~Lvp~~i~~~~~~~i~~~L-----~~~v~vv~~~i~~s~~vG~li~~N~~G~lV~~~~~   77 (183)
                      ++++|+||+++|.++++|++++|||+.+.++|++.|++.|     |.+|.+++.   +.+++||++++||+|++|||.++
T Consensus        47 v~tsI~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~l~~~~~dv~V~~l~~---~~nAlGN~I~~ND~~Alv~p~l~  123 (225)
T d1g61a_          47 LQTNIGGSSLVGSLSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKS---KNTALGNLILTNDKGALISPELK  123 (225)
T ss_dssp             EECCBTTBSCHHHHCEECSSEEEEETTCCHHHHHHHHHHHHHTTCCCEEEEECC---SSCCHHHHEEECSSEEEECGGGG
T ss_pred             EEEEecCcceeeeEEeccCCeEEeCCcCCHHHHHHHHhhcccccCCceEEEeCC---cccccccEEEEcCcceEeccccc
Confidence            7899999999999999999999999999999999999986     334666664   55999999999999999999995


Q ss_pred             HHHHHHHHhhCCCCeEEEEec-CCccceeeEEEEeCceeEEccCCCHHHHHHHHhhhCee-EEEEee-cCcccceeEEEE
Q 030052           78 DQELQHLRNSLPDQVVVQRIE-ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVE-VFRQTI-AGNILVGSYCSF  154 (183)
Q Consensus        78 ~~e~~~i~~~L~~~v~v~~~~-~~~~avGn~ivaNd~galv~p~~s~~el~~I~dvL~Ve-v~~gti-~G~~~VGs~~va  154 (183)
                       ++.+.|+|.|+  |++.+.+ ++..++|+..++||+|+|+||+++++|+++|+++|||+ +..||+ +|.|+||||++|
T Consensus       124 -e~~e~I~dvL~--Vev~r~~iag~~~VGs~~v~tn~G~LvhP~~s~~E~~~l~~~l~V~~v~~GTVN~Gs~~VgsGlva  200 (225)
T d1g61a_         124 -DFKKDIEDSLN--VEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLFKVEYIGKGTANKGTTSVGACIIA  200 (225)
T ss_dssp             -GGHHHHHHHHC--SEEEECCBTTBSCTTTSEEECSSEEEECTTCCHHHHHHHHHHHTCSEEEECCBTTTBSCGGGTEEE
T ss_pred             -hHHHHHHHhhC--ceEEEEEeCCcccceeEEEEeccceEECCCCCHHHHHHHHHHhCCCcccccceeCCCCCceeEEEE
Confidence             56799999997  7777877 99999999999999999999999999999999999999 689999 999999999999


Q ss_pred             cCceEEecCCCCHHHHHHHHHhhcc
Q 030052          155 SNRGGLVRHRISSSRHLLKHFLLQC  179 (183)
Q Consensus       155 nn~G~lV~~~tt~~El~~i~~~l~~  179 (183)
                      ||+|++||.+||++||.|||++|++
T Consensus       201 N~~g~~vG~~TTg~El~~Ie~a~~l  225 (225)
T d1g61a_         201 NSKGAVVGGDTTGPELLIIEDALGL  225 (225)
T ss_dssp             CSSCEEEETTCCHHHHHHHHHHHTC
T ss_pred             cCceEEEcCCCchHHHHHHHHHhCC
Confidence            9999999999999999999999985