Citrus Sinensis ID: 030066

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180---
Protein Sequence
MLLEASSALSLVSPQKEALNPLFSSVSSAFPPNPSLRFSSPKNDNGVVVCASKNANNSPLTGVIFAPFEEVKKELDLVPTVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYDE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEEEcccccccccEEEEccHHHHHHHHccccccccHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHccccccccccccc
Coil and Loop (DISEMBL)
MLLEASSalslvspqkealnplfssvssafppnpslrfsspkndngvvvcasknannspltgvifaPFEEVKkeldlvptvpqlslarhkftDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSIlmplsefdhaekgdalyde
Flexible Loop (DISEMBL)
MLLEASSALSLVSPQKEALNPLFSSVSSAFPPNPSLRFSSPKNDNGVVVCASknannsplTGVIFAPFEEVKKELDLVPTVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILmplsefdhaekgdalyde
Low Complexity Region (SEG)
MlleassalslvsPQKEALNPLFSSVSSAFPPNPSLRFSSPKNDNGVVVCASKNANNSPLTGVIFAPFEEVKKELDLVPTVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLakffkesseeerehaeKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYDE
Disordered region (IsUnstruct)
**********************************************VVVCASKNANNSPLTGVIFAPFEEVKKELDLVPTVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFF*************************************************
Disordered Region (DISOPRED)
********************************************************NSPLTGVIFAPFEEVKKELD*********LARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYD*
Disordered Region (DISEMBL)
MLLEASSALSLVSPQKEALNPLFSSVSSAFPPNPSLRFSSPKNDNGVVVCASKNANNSPLTGVIFAPFEEVKKELDLVPTVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFK***********KLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYDE
Disordered Region (DISPRO)
********************************************NGVVVCASKNANNSPLTGVIFAPFEEVKKELDLVPTVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFD***K*D*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLLEASSALSLVSPQKEALNPLFSSVSSAFPPNPSLRFSSPKNDNGVVVCASKNANNSPLTGVIFAPFEEVKKELDLVPTVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFxxxxxxxxxxxxxxxxxxxxxxGGKVKLQSILMPLSEFDHAEKGDALYDE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	183	2.2.26 [Sep-21-2011]
Q8H1T3	259	Ferritin-2, chloroplastic	N/A	no	0.967	0.683	0.730	9e-73
Q948P6	256	Ferritin-3, chloroplastic	yes	no	0.956	0.683	0.745	3e-72
Q41709	250	Ferritin-2, chloroplastic	N/A	no	0.841	0.616	0.759	3e-63
Q948P5	247	Ferritin-4, chloroplastic	no	no	0.819	0.607	0.777	3e-63
Q9S756	259	Ferritin-4, chloroplastic	yes	no	0.874	0.617	0.706	4e-62
Q8RX97	251	Ferritin-1, chloroplastic	N/A	no	0.934	0.681	0.679	1e-59
Q9SRL5	253	Ferritin-2, chloroplastic	no	no	0.934	0.675	0.643	4e-59
P29036	254	Ferritin-1, chloroplastic	N/A	no	0.923	0.665	0.635	6e-58
P29390	252	Ferritin-2, chloroplastic	N/A	no	0.666	0.484	0.811	5e-56
Q9LYN2	259	Ferritin-3, chloroplastic	no	no	0.655	0.463	0.808	1e-53

>sp|Q8H1T3|FRI2_TOBAC Ferritin-2, chloroplastic OS=Nicotiana tabacum GN=FER2 PE=2 SV=1

 Score =  272 bits (695), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 133/182 (73%), Positives = 153/182 (84%), Gaps = 5/182 (2%)

Query: 1   MLLEASSALSLVSPQKEALNPLFSSVSSAFPPNPSLRFSSPKNDNGV-VVCASKNANNSP 59
           MLL+ + A +L++   E L+P+ S+ S  F     L+  S K+ NG+ VVCASK +N  P
Sbjct: 1   MLLKLAPAFTLLNSHGENLSPMLSTSSQGFV----LKNFSTKSRNGLLVVCASKGSNTKP 56

Query: 60  LTGVIFAPFEEVKKELDLVPTVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAY 119
           LTGV+F PFEEVKKEL LVPTVPQ+SLARHK++D CEAA+NEQINVEYNVSYVYH M+AY
Sbjct: 57  LTGVVFEPFEEVKKELMLVPTVPQVSLARHKYSDQCEAAVNEQINVEYNVSYVYHGMYAY 116

Query: 120 FDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDA 179
           FDRDNVALKGLA+FFKESSEEER HAEKLMEYQNKRGGKVKLQSILMPLSEFDHAE+GDA
Sbjct: 117 FDRDNVALKGLARFFKESSEEERGHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEEGDA 176

Query: 180 LY 181
           LY
Sbjct: 177 LY 178

Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Has ferroxidase activity. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.
Nicotiana tabacum (taxid: 4097)
EC: 1EC: .EC: 1EC: 6EC: .EC: 3EC: .EC: 1

>sp|Q948P6|FRI3_SOYBN Ferritin-3, chloroplastic OS=Glycine max PE=2 SV=1

 Score =  270 bits (691), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 135/181 (74%), Positives = 149/181 (82%), Gaps = 6/181 (3%)

Query: 1   MLLEASSALSLVSPQKEALNPLFSSVSSAFPPNPSLRFSSPKNDNGVVVCASKNANNSPL 60
           MLL  +S+ SL+    + + PL +S SS       +R+S     N +V CA+K+ NN PL
Sbjct: 1   MLLRTASSFSLLKANADHILPLPNSSSSGI-----IRYSQSLGKN-LVPCATKDTNNRPL 54

Query: 61  TGVIFAPFEEVKKELDLVPTVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYF 120
           TGV+F PFEEVKKELDLVPTVPQ SLAR K+TDDCEA INEQINVEYNVSYVYHAMFAYF
Sbjct: 55  TGVVFEPFEEVKKELDLVPTVPQASLARQKYTDDCEATINEQINVEYNVSYVYHAMFAYF 114

Query: 121 DRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDAL 180
           DRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSI+MPLSEFDH EKGDAL
Sbjct: 115 DRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSIVMPLSEFDHEEKGDAL 174

Query: 181 Y 181
           Y
Sbjct: 175 Y 175

Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Has ferroxidase activity. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.

Glycine max (taxid: 3847)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 3

EC: .

EC: 1

>sp|Q41709|FRI2_VIGUN Ferritin-2, chloroplastic OS=Vigna unguiculata GN=PFE2 PE=2 SV=2

 Score =  240 bits (613), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 120/158 (75%), Positives = 134/158 (84%), Gaps = 4/158 (2%)

Query: 28  SAFPPNPSLRFSSP---KNDNGVVVCASKNA-NNSPLTGVIFAPFEEVKKELDLVPTVPQ 83
           S F PN     S P    N + +VV A+K + N+  LTGVIF PFEEVKKELDLVPTVPQ
Sbjct: 12  SLFNPNAEPSRSVPVLANNASRLVVRAAKGSTNHRALTGVIFEPFEEVKKELDLVPTVPQ 71

Query: 84  LSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEERE 143
            SLAR K+ D+ EAA+NEQINVEYNVSYVYHA+FAYFDRDNVAL+GLAKFFKESSEEERE
Sbjct: 72  ASLARQKYVDESEAAVNEQINVEYNVSYVYHALFAYFDRDNVALRGLAKFFKESSEEERE 131

Query: 144 HAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALY 181
           HAEKLMEYQN+RGGKVKLQSI+MPLSEFDHA+KGDAL+
Sbjct: 132 HAEKLMEYQNRRGGKVKLQSIVMPLSEFDHADKGDALH 169

Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Has ferroxidase activity. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.

Vigna unguiculata (taxid: 3917)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 3

EC: .

EC: 1

>sp|Q948P5|FRI4_SOYBN Ferritin-4, chloroplastic OS=Glycine max PE=1 SV=2

 Score =  240 bits (613), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 119/153 (77%), Positives = 132/153 (86%), Gaps = 3/153 (1%)

Query: 30  FPPNPSLRFSSPKNDNGVVVCASKNA-NNSPLTGVIFAPFEEVKKELDLVPTVPQLSLAR 88
           F PN     S P    G+VV A+K + N+  LTGVIF PFEEVKKELDLVPTVPQ SLAR
Sbjct: 16  FSPNAEPPRSVPAR--GLVVRAAKGSTNHRALTGVIFEPFEEVKKELDLVPTVPQASLAR 73

Query: 89  HKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKL 148
            K+ D+ E+A+NEQINVEYNVSYVYHAMFAYFDRDNVAL+GLAKFFKESSEEEREHAEKL
Sbjct: 74  QKYVDESESAVNEQINVEYNVSYVYHAMFAYFDRDNVALRGLAKFFKESSEEEREHAEKL 133

Query: 149 MEYQNKRGGKVKLQSILMPLSEFDHAEKGDALY 181
           MEYQNKRGGKVKLQSI+MPLS+FDHA+KGDAL+
Sbjct: 134 MEYQNKRGGKVKLQSIVMPLSDFDHADKGDALH 166

Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Has ferroxidase activity. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.

Glycine max (taxid: 3847)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 3

EC: .

EC: 1

>sp|Q9S756|FRI4_ARATH Ferritin-4, chloroplastic OS=Arabidopsis thaliana GN=FER4 PE=2 SV=1

 Score =  237 bits (604), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 118/167 (70%), Positives = 138/167 (82%), Gaps = 7/167 (4%)

Query: 16  KEALNPLFSSVSSAFPPNPSLRFSSPKNDNGVV-VCASKNANNSPLTGVIFAPFEEVKKE 74
           K+ ++PL  S+SS      +LR SS K+ N      ASK++    L+GV+F PF+EVKKE
Sbjct: 23  KKDVSPLLPSISS------NLRVSSGKSGNLTFSFRASKSSTTDALSGVVFEPFKEVKKE 76

Query: 75  LDLVPTVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFF 134
           LDLVPT   LSLAR K++D+CEAAINEQINVEYNVSYVYHAM+AYFDRDN+ALKGLAKFF
Sbjct: 77  LDLVPTSSHLSLARQKYSDECEAAINEQINVEYNVSYVYHAMYAYFDRDNIALKGLAKFF 136

Query: 135 KESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALY 181
           KESS EEREHAEKLMEYQNKRGG+VKLQSI+MPLSEF+H +KGDALY
Sbjct: 137 KESSLEEREHAEKLMEYQNKRGGRVKLQSIVMPLSEFEHVDKGDALY 183

Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Has ferroxidase activity. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 3

EC: .

EC: 1

>sp|Q8RX97|FRI1_TOBAC Ferritin-1, chloroplastic OS=Nicotiana tabacum GN=FER1 PE=2 SV=1

 Score =  228 bits (582), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 123/181 (67%), Positives = 138/181 (76%), Gaps = 10/181 (5%)

Query: 1   MLLEASSALSLVSPQKEALNPLFSSVSSAFPPNPSLRFSSPKNDNGVVVCASKNANNSPL 60
           MLL+A+ A +L++ Q E          +  P   S +  SPKN N  VV ASK  N+ PL
Sbjct: 1   MLLKAAPAFALLNTQGE----------NLSPLFSSSKSFSPKNGNRFVVSASKATNHKPL 50

Query: 61  TGVIFAPFEEVKKELDLVPTVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYF 120
           TGV+F PFEE+KKEL LVP VP  SL R K++DDCEAAINEQINVEYN SYVYHAMFAYF
Sbjct: 51  TGVVFEPFEELKKELMLVPAVPDTSLCRQKYSDDCEAAINEQINVEYNNSYVYHAMFAYF 110

Query: 121 DRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDAL 180
           DRDNVALKGLAKFFKESS EEREHAEKLME+QNKRGG+VKL SI  P +EFDH EKGDAL
Sbjct: 111 DRDNVALKGLAKFFKESSLEEREHAEKLMEFQNKRGGRVKLLSICAPPTEFDHCEKGDAL 170

Query: 181 Y 181
           Y
Sbjct: 171 Y 171

Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Has ferroxidase activity. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.

Nicotiana tabacum (taxid: 4097)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 3

EC: .

EC: 1

>sp|Q9SRL5|FRI2_ARATH Ferritin-2, chloroplastic OS=Arabidopsis thaliana GN=FER2 PE=2 SV=1

 Score =  227 bits (578), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 119/185 (64%), Positives = 138/185 (74%), Gaps = 14/185 (7%)

Query: 1   MLLEASSALSLVSPQKEALNPLF----SSVSSAFPPNPSLRFSSPKNDNGVVVCASKNAN 56
           ML +AS ALSL+S        LF    +S +  F P+ S RFS         V A+K  N
Sbjct: 1   MLHKASPALSLLSSGYTGGGNLFPPSRNSSNLLFSPSGS-RFS---------VQAAKGTN 50

Query: 57  NSPLTGVIFAPFEEVKKELDLVPTVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAM 116
              LTGV+F PFEEVKKE++LVPT P +SLARHKF+DD E+AIN+QINVEYNVSYVYHA+
Sbjct: 51  TKSLTGVVFEPFEEVKKEMELVPTTPFVSLARHKFSDDSESAINDQINVEYNVSYVYHAL 110

Query: 117 FAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEK 176
           +AYFDRDNV LKG AKFF +SS EER HAE  MEYQNKRGG+VKLQSILMP+SEFDH EK
Sbjct: 111 YAYFDRDNVGLKGFAKFFNDSSLEERGHAEMFMEYQNKRGGRVKLQSILMPVSEFDHEEK 170

Query: 177 GDALY 181
           GDAL+
Sbjct: 171 GDALH 175

Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Has ferroxidase activity. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 3

EC: .

EC: 1

>sp|P29036|FRI1_MAIZE Ferritin-1, chloroplastic OS=Zea mays GN=FER1 PE=1 SV=2

 Score =  223 bits (568), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 110/173 (63%), Positives = 128/173 (73%), Gaps = 4/173 (2%)

Query: 12  VSPQKEALNPLFSSVSSAFPPNPSLRFSSPKN---DNGVVVCASKNANNSPLTGVIFAPF 68
           VSP   A  P   S + A  P P +R ++P+     +    C +       L+GV+F PF
Sbjct: 5   VSPSPAAAVPTQLSGAPA-TPAPVVRVAAPRGVASPSAGAACRAAGKGKEVLSGVVFQPF 63

Query: 69  EEVKKELDLVPTVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALK 128
           EE+K EL LVP  P  SLARHKF DDCEAA+NEQINVEYN SY YH++FAYFDRDNVALK
Sbjct: 64  EEIKGELALVPQSPDKSLARHKFVDDCEAALNEQINVEYNASYAYHSLFAYFDRDNVALK 123

Query: 129 GLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALY 181
           G AKFFKESS+EEREHAEKLMEYQNKRGG+V+LQSI+ PL+EFDH EKGDALY
Sbjct: 124 GFAKFFKESSDEEREHAEKLMEYQNKRGGRVRLQSIVTPLTEFDHPEKGDALY 176

Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Has ferroxidase activity. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 3

EC: .

EC: 1

>sp|P29390|FRI2_MAIZE Ferritin-2, chloroplastic OS=Zea mays GN=FER2 PE=1 SV=2

 Score =  216 bits (551), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 99/122 (81%), Positives = 109/122 (89%)

Query: 60  LTGVIFAPFEEVKKELDLVPTVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAY 119
           L+GV+F PFEE+K EL LVP  P  SLARHKF DDCEAAINEQINVEYN SY YH++FAY
Sbjct: 52  LSGVVFQPFEEIKGELALVPQSPDRSLARHKFVDDCEAAINEQINVEYNASYAYHSLFAY 111

Query: 120 FDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDA 179
           FDRDNVALKG AKFFKESS+EEREHAEKLMEYQNKRGG+V+LQSI+ PL+EFDH EKGDA
Sbjct: 112 FDRDNVALKGFAKFFKESSDEEREHAEKLMEYQNKRGGRVRLQSIVAPLTEFDHPEKGDA 171

Query: 180 LY 181
           LY
Sbjct: 172 LY 173

Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Has ferroxidase activity. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 3

EC: .

EC: 1

>sp|Q9LYN2|FRI3_ARATH Ferritin-3, chloroplastic OS=Arabidopsis thaliana GN=FER3 PE=2 SV=1

 Score =  208 bits (530), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 97/120 (80%), Positives = 110/120 (91%)

Query: 62  GVIFAPFEEVKKELDLVPTVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFD 121
           GV+F PFEEVKKE+DLVP+  QLSLARH ++ +CEAA+NEQINVEYNVSYVYHA++AYFD
Sbjct: 62  GVVFEPFEEVKKEMDLVPSGQQLSLARHLYSPECEAAVNEQINVEYNVSYVYHALYAYFD 121

Query: 122 RDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALY 181
           RDNVALKGLAKFFKESS EEREHAE LMEYQNKRGG+VKLQ +++P SEFDH EKGDALY
Sbjct: 122 RDNVALKGLAKFFKESSVEEREHAELLMEYQNKRGGRVKLQPMVLPQSEFDHPEKGDALY 181

Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Has ferroxidase activity. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 3

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
224109256	264	predicted protein [Populus trichocarpa]	0.989	0.685	0.775	3e-73
29839345	259	RecName: Full=Ferritin-2, chloroplastic;	0.967	0.683	0.730	4e-71
89276795	305	iron-binding protein [Pyrus pyrifolia]	0.868	0.521	0.798	1e-70
351723695	256	ferritin-3, chloroplastic [Glycine max]	0.956	0.683	0.745	1e-70
257219560	256	chloroplast ferritin 2 precursor [Jatrop	0.956	0.683	0.751	2e-70
72256932	277	chloroplast ferritin [Malus x domestica]	0.868	0.574	0.798	1e-69
397914246	256	ferritin Fer11;1 [Glycine max]	0.956	0.683	0.729	2e-68
156118336	263	ferritin [Solanum tuberosum]	0.967	0.673	0.729	5e-68
239909309	257	ferritin [Jatropha curcas]	0.956	0.680	0.729	1e-67
89276799	307	iron-binding protein [Pyrus pyrifolia]	0.868	0.517	0.779	2e-67

>gi|224109256|ref|XP_002315139.1| predicted protein [Populus trichocarpa] gi|118489975|gb|ABK96784.1| unknown [Populus trichocarpa x Populus deltoides] gi|222864179|gb|EEF01310.1| predicted protein [Populus trichocarpa]

 Score =  279 bits (714), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 142/183 (77%), Positives = 153/183 (83%), Gaps = 2/183 (1%)

Query: 1   MLLEASSALSLVSPQKEALNPLFSSVSSAFPPNPSLR--FSSPKNDNGVVVCASKNANNS 58
           MLL+A+ A SL++   + L  LF SVSS    N S+   F   K  +G VVCASK ANN 
Sbjct: 1   MLLKAAPAFSLLNATGDNLGSLFPSVSSLSNKNLSVSPSFLRSKTGSGFVVCASKGANNR 60

Query: 59  PLTGVIFAPFEEVKKELDLVPTVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFA 118
           PLTGV+F PFEEVKKEL+LVP VPQ+SLAR KFTD+ EAAINEQINVEYNVSYVYHAMFA
Sbjct: 61  PLTGVVFEPFEEVKKELNLVPNVPQVSLARQKFTDESEAAINEQINVEYNVSYVYHAMFA 120

Query: 119 YFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGD 178
           YFDRDNVALKGLAKFFKESS EEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGD
Sbjct: 121 YFDRDNVALKGLAKFFKESSIEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGD 180

Query: 179 ALY 181
           ALY
Sbjct: 181 ALY 183

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|29839345|sp|Q8H1T3.1|FRI2_TOBAC RecName: Full=Ferritin-2, chloroplastic; AltName: Full=NtFer2; Flags: Precursor gi|22859014|gb|AAN06322.1| ferritin 2 [Nicotiana tabacum]

 Score =  272 bits (695), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 133/182 (73%), Positives = 153/182 (84%), Gaps = 5/182 (2%)

Query: 1   MLLEASSALSLVSPQKEALNPLFSSVSSAFPPNPSLRFSSPKNDNGV-VVCASKNANNSP 59
           MLL+ + A +L++   E L+P+ S+ S  F     L+  S K+ NG+ VVCASK +N  P
Sbjct: 1   MLLKLAPAFTLLNSHGENLSPMLSTSSQGFV----LKNFSTKSRNGLLVVCASKGSNTKP 56

Query: 60  LTGVIFAPFEEVKKELDLVPTVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAY 119
           LTGV+F PFEEVKKEL LVPTVPQ+SLARHK++D CEAA+NEQINVEYNVSYVYH M+AY
Sbjct: 57  LTGVVFEPFEEVKKELMLVPTVPQVSLARHKYSDQCEAAVNEQINVEYNVSYVYHGMYAY 116

Query: 120 FDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDA 179
           FDRDNVALKGLA+FFKESSEEER HAEKLMEYQNKRGGKVKLQSILMPLSEFDHAE+GDA
Sbjct: 117 FDRDNVALKGLARFFKESSEEERGHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEEGDA 176

Query: 180 LY 181
           LY
Sbjct: 177 LY 178

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|89276795|gb|ABD66596.1| iron-binding protein [Pyrus pyrifolia]

 Score =  271 bits (692), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 127/159 (79%), Positives = 144/159 (90%)

Query: 23  FSSVSSAFPPNPSLRFSSPKNDNGVVVCASKNANNSPLTGVIFAPFEEVKKELDLVPTVP 82
           FS ++S+   +  LRFS  +N+ GVVVCASKNANN PLTGV+F PFEEVKKELDLVPT+P
Sbjct: 38  FSPLNSSTSMSSILRFSPARNERGVVVCASKNANNRPLTGVVFDPFEEVKKELDLVPTLP 97

Query: 83  QLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEER 142
           Q+SLAR KFTD+ EAAINEQINVEYNVSY+YHAM+AYFDRDNVA KG+AKFFKESSEEER
Sbjct: 98  QVSLARQKFTDESEAAINEQINVEYNVSYIYHAMYAYFDRDNVARKGIAKFFKESSEEER 157

Query: 143 EHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALY 181
           +HAEKLMEYQNKRGG+VKLQ+ILMP+SEFDH EKGDALY
Sbjct: 158 DHAEKLMEYQNKRGGRVKLQTILMPVSEFDHPEKGDALY 196

Source: Pyrus pyrifolia

Species: Pyrus pyrifolia

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723695|ref|NP_001237032.1| ferritin-3, chloroplastic [Glycine max] gi|29839387|sp|Q948P6.1|FRI3_SOYBN RecName: Full=Ferritin-3, chloroplastic; AltName: Full=SFerH-3; Flags: Precursor gi|15487307|dbj|BAB64536.1| ferritin [Glycine max]

 Score =  270 bits (691), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 135/181 (74%), Positives = 149/181 (82%), Gaps = 6/181 (3%)

Query: 1   MLLEASSALSLVSPQKEALNPLFSSVSSAFPPNPSLRFSSPKNDNGVVVCASKNANNSPL 60
           MLL  +S+ SL+    + + PL +S SS       +R+S     N +V CA+K+ NN PL
Sbjct: 1   MLLRTASSFSLLKANADHILPLPNSSSSGI-----IRYSQSLGKN-LVPCATKDTNNRPL 54

Query: 61  TGVIFAPFEEVKKELDLVPTVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYF 120
           TGV+F PFEEVKKELDLVPTVPQ SLAR K+TDDCEA INEQINVEYNVSYVYHAMFAYF
Sbjct: 55  TGVVFEPFEEVKKELDLVPTVPQASLARQKYTDDCEATINEQINVEYNVSYVYHAMFAYF 114

Query: 121 DRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDAL 180
           DRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSI+MPLSEFDH EKGDAL
Sbjct: 115 DRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSIVMPLSEFDHEEKGDAL 174

Query: 181 Y 181
           Y
Sbjct: 175 Y 175

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|257219560|gb|ACV50433.1| chloroplast ferritin 2 precursor [Jatropha curcas]

 Score =  270 bits (690), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 136/181 (75%), Positives = 154/181 (85%), Gaps = 6/181 (3%)

Query: 1   MLLEASSALSLVSPQKEALNPLFSSVSSAFPPNPSLRFSSPKNDNGVVVCASKNANNSPL 60
           MLL+A+ A SL++   + L PLFS VSS+F    +LR    K+  G VVCASK  N+ PL
Sbjct: 1   MLLKAAPAFSLLNTHGDNLGPLFSPVSSSFN---TLR---GKSVPGFVVCASKGTNSKPL 54

Query: 61  TGVIFAPFEEVKKELDLVPTVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYF 120
           TGVIF PFEEVKKEL+LVPTVPQ+S+AR K++D+ EAAINEQINVEYNVSYVYHAMFAYF
Sbjct: 55  TGVIFEPFEEVKKELNLVPTVPQVSIARQKYSDESEAAINEQINVEYNVSYVYHAMFAYF 114

Query: 121 DRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDAL 180
           DRDNVALKGLAKFFKESS EEREHAEKLMEYQNKRGGKVKLQSI+MPL+E+DH EKGDAL
Sbjct: 115 DRDNVALKGLAKFFKESSLEEREHAEKLMEYQNKRGGKVKLQSIVMPLTEYDHVEKGDAL 174

Query: 181 Y 181
           Y
Sbjct: 175 Y 175

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|72256932|gb|AAZ67353.1| chloroplast ferritin [Malus x domestica]

 Score =  267 bits (683), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 127/159 (79%), Positives = 141/159 (88%)

Query: 23  FSSVSSAFPPNPSLRFSSPKNDNGVVVCASKNANNSPLTGVIFAPFEEVKKELDLVPTVP 82
           FS ++S+   +  LRF   KN++GVVVCASKNA N PLTGV+F PFEEVKKELDLVPT+P
Sbjct: 38  FSPLNSSTSLSSILRFPPAKNESGVVVCASKNATNRPLTGVVFEPFEEVKKELDLVPTLP 97

Query: 83  QLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEER 142
           Q SLAR K+TD+ EAAINEQINVEYNVSYVYHA++AYFDRDNVALKGLA FFKESSEEER
Sbjct: 98  QFSLARQKYTDESEAAINEQINVEYNVSYVYHALYAYFDRDNVALKGLANFFKESSEEER 157

Query: 143 EHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALY 181
           +HAEK MEYQNKRGG+VKLQSILMPLSEFDH EKGDALY
Sbjct: 158 DHAEKFMEYQNKRGGRVKLQSILMPLSEFDHPEKGDALY 196

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|397914246|gb|AFO70135.1| ferritin Fer11;1 [Glycine max]

 Score =  263 bits (673), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 132/181 (72%), Positives = 146/181 (80%), Gaps = 6/181 (3%)

Query: 1   MLLEASSALSLVSPQKEALNPLFSSVSSAFPPNPSLRFSSPKNDNGVVVCASKNANNSPL 60
           MLL  +S+ SL+    + + PL +S SS       +R+S     N +V CA+K+ NN PL
Sbjct: 1   MLLRTASSFSLLKANADHILPLPNSSSSGI-----IRYSQSLGKN-MVPCATKDTNNRPL 54

Query: 61  TGVIFAPFEEVKKELDLVPTVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYF 120
           TGV+F PFEEVKKELDLV TVPQ SLAR K+TDDCEA INEQINVEYNVSYVYHAMFAYF
Sbjct: 55  TGVVFEPFEEVKKELDLVTTVPQASLARQKYTDDCEATINEQINVEYNVSYVYHAMFAYF 114

Query: 121 DRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDAL 180
           DRDNVALKGLAKFFKESSEEER HA KLMEYQNKRGGKVKLQSI+MPLSEFDH EKGDAL
Sbjct: 115 DRDNVALKGLAKFFKESSEEERAHAGKLMEYQNKRGGKVKLQSIVMPLSEFDHEEKGDAL 174

Query: 181 Y 181
           Y
Sbjct: 175 Y 175

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|156118336|gb|ABU49726.1| ferritin [Solanum tuberosum]

 Score =  262 bits (669), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 132/181 (72%), Positives = 147/181 (81%), Gaps = 4/181 (2%)

Query: 1   MLLEASSALSLVSPQKEALNPLFSSVSSAFPPNPSLRFSSPKNDNGVVVCASKNANNSPL 60
           MLL+ + A +L++   E L    SSV S       L+  S K+ NG+VVCASK++N+ PL
Sbjct: 1   MLLKVAPAFALLNTHGENL----SSVISFSSHGSVLKIFSAKSGNGLVVCASKSSNSKPL 56

Query: 61  TGVIFAPFEEVKKELDLVPTVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYF 120
           TGV+F PFEEVKKEL LVPT P  SLAR KFTD  EAA+NEQINVEYNVSYVYHAM+AYF
Sbjct: 57  TGVVFEPFEEVKKELMLVPTAPHASLARQKFTDQSEAALNEQINVEYNVSYVYHAMYAYF 116

Query: 121 DRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDAL 180
            RDNVALKGLAKFFKESSEEEREHAEK MEYQNKRGGKVKLQSILMPLSEFDHAEKGDAL
Sbjct: 117 GRDNVALKGLAKFFKESSEEEREHAEKFMEYQNKRGGKVKLQSILMPLSEFDHAEKGDAL 176

Query: 181 Y 181
           +
Sbjct: 177 H 177

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|239909309|gb|ACS32300.1| ferritin [Jatropha curcas]

 Score =  261 bits (666), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 132/181 (72%), Positives = 151/181 (83%), Gaps = 6/181 (3%)

Query: 1   MLLEASSALSLVSPQKEALNPLFSSVSSAFPPNPSLRFSSPKNDNGVVVCASKNANNSPL 60
           MLL+A+ A SL++     L PLFS VSS+F    +LR    K+  G VVCASK  N+ PL
Sbjct: 1   MLLKAAPAFSLLNTHGGNLGPLFSPVSSSFN---TLR---GKSVPGFVVCASKGTNSKPL 54

Query: 61  TGVIFAPFEEVKKELDLVPTVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYF 120
           TGVIF PFEEVKKEL+LVPTVPQ+++AR K++D+ EAAINEQINVEYNVSYVYHAMFAYF
Sbjct: 55  TGVIFEPFEEVKKELNLVPTVPQVTIARQKYSDENEAAINEQINVEYNVSYVYHAMFAYF 114

Query: 121 DRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDAL 180
           DRDNVALKGLAKFFKESS EEREHAEKLM  +NKRGGKVKLQSI+MPL+E+DH EKGDAL
Sbjct: 115 DRDNVALKGLAKFFKESSLEEREHAEKLMNTRNKRGGKVKLQSIVMPLTEYDHVEKGDAL 174

Query: 181 Y 181
           Y
Sbjct: 175 Y 175

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|89276799|gb|ABD66598.1| iron-binding protein [Pyrus pyrifolia]

 Score =  260 bits (664), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 124/159 (77%), Positives = 140/159 (88%)

Query: 23  FSSVSSAFPPNPSLRFSSPKNDNGVVVCASKNANNSPLTGVIFAPFEEVKKELDLVPTVP 82
           FS ++S+   +  LRF   KN++GVVVCASKNA N PLTGV+F PFEEVKKELDLVPT+P
Sbjct: 74  FSPLNSSTSLSSILRFPPAKNESGVVVCASKNATNRPLTGVVFEPFEEVKKELDLVPTLP 133

Query: 83  QLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEER 142
           Q SLAR K+TD+ EAAIN QI+VEYNVSYVYHA++AYFDRDNVALKGLA FFKESSEEER
Sbjct: 134 QFSLARQKYTDESEAAINGQISVEYNVSYVYHALYAYFDRDNVALKGLANFFKESSEEER 193

Query: 143 EHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALY 181
           +HAEK MEYQNKRGG+VKLQSILMP+SEFDH EKGDALY
Sbjct: 194 DHAEKFMEYQNKRGGRVKLQSILMPVSEFDHPEKGDALY 232

Source: Pyrus pyrifolia

Species: Pyrus pyrifolia

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
TAIR|locus:2063104	259	FER4 "ferritin 4" [Arabidopsis	0.874	0.617	0.616	1.6e-47
TAIR|locus:2074683	253	FER2 "ferritin 2" [Arabidopsis	0.912	0.660	0.576	1.3e-45
TAIR|locus:2078481	259	FER3 "ferritin 3" [Arabidopsis	0.885	0.625	0.588	5.6e-45
TAIR|locus:2149755	255	FER1 "ferretin 1" [Arabidopsis	0.857	0.615	0.563	5.3e-40
UNIPROTKB|F1NL14	209	FTH1 "Ferritin" [Gallus gallus	0.497	0.435	0.451	3e-14
UNIPROTKB|P08267	180	FTH "Ferritin heavy chain" [Ga	0.497	0.505	0.451	3e-14
UNIPROTKB|P02794	183	FTH1 "Ferritin heavy chain" [H	0.524	0.524	0.428	1.3e-13
MGI|MGI:95588	182	Fth1 "ferritin heavy chain 1"	0.524	0.527	0.428	1.3e-13
ZFIN|ZDB-GENE-040718-72	226	zgc:92066 "zgc:92066" [Danio r	0.726	0.588	0.328	1.3e-13
UNIPROTKB|I3LR69	181	FTH1 "Ferritin" [Sus scrofa (t	0.497	0.502	0.451	1.6e-13

TAIR|locus:2063104 FER4 "ferritin 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
 Identities = 103/167 (61%), Positives = 123/167 (73%)

Query:    16 KEALNPLFSSVSSAFPPNPSLRFSSPKNDNGVVVC-ASKNANNSPLTGVIFAPFEEVKKE 74
             K+ ++PL  S+SS      +LR SS K+ N      ASK++    L+GV+F PF+EVKKE
Sbjct:    23 KKDVSPLLPSISS------NLRVSSGKSGNLTFSFRASKSSTTDALSGVVFEPFKEVKKE 76

Query:    75 LDLVPTVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXX 134
             LDLVPT   LSLAR K++D+CEAAINEQINVEYNVSYVYHAM+AYFDRDN+ALKGL    
Sbjct:    77 LDLVPTSSHLSLARQKYSDECEAAINEQINVEYNVSYVYHAMYAYFDRDNIALKGLAKFF 136

Query:   135 XXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALY 181
                         KLMEYQNKRGG+VKLQSI+MPLSEF+H +KGDALY
Sbjct:   137 KESSLEEREHAEKLMEYQNKRGGRVKLQSIVMPLSEFEHVDKGDALY 183

GO:0006826 "iron ion transport" evidence=IEA;IGI;ISS

GO:0006879 "cellular iron ion homeostasis" evidence=IEA;ISS

GO:0008199 "ferric iron binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;ISS;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0046914 "transition metal ion binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0010039 "response to iron ion" evidence=IEP;RCA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0000302 "response to reactive oxygen species" evidence=IGI;RCA

GO:0009908 "flower development" evidence=IGI

GO:0015979 "photosynthesis" evidence=IGI;RCA

GO:0048366 "leaf development" evidence=IGI

GO:0055072 "iron ion homeostasis" evidence=IGI;RCA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2074683 FER2 "ferritin 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
 Identities = 98/170 (57%), Positives = 115/170 (67%)

Query:    14 PQKEALNPLFSSVSSAFPP--NPSLRFSSPKNDNGVVVCASKNANNSPLTGVIFAPFEEV 71
             P    L+  ++   + FPP  N S    SP       V A+K  N   LTGV+F PFEEV
Sbjct:     7 PALSLLSSGYTGGGNLFPPSRNSSNLLFSPSGSR-FSVQAAKGTNTKSLTGVVFEPFEEV 65

Query:    72 KKELDLVPTVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLX 131
             KKE++LVPT P +SLARHKF+DD E+AIN+QINVEYNVSYVYHA++AYFDRDNV LKG  
Sbjct:    66 KKEMELVPTTPFVSLARHKFSDDSESAINDQINVEYNVSYVYHALYAYFDRDNVGLKGFA 125

Query:   132 XXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALY 181
                              MEYQNKRGG+VKLQSILMP+SEFDH EKGDAL+
Sbjct:   126 KFFNDSSLEERGHAEMFMEYQNKRGGRVKLQSILMPVSEFDHEEKGDALH 175

GO:0006826 "iron ion transport" evidence=IEA;ISS

GO:0006879 "cellular iron ion homeostasis" evidence=IEA;ISS

GO:0008199 "ferric iron binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0046914 "transition metal ion binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0000302 "response to reactive oxygen species" evidence=RCA

GO:0010039 "response to iron ion" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0055072 "iron ion homeostasis" evidence=RCA

TAIR|locus:2078481 FER3 "ferritin 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 100/170 (58%), Positives = 122/170 (71%)

Query:    15 QKEALNPLFSSVSSAFPPNPSLRFSSPKNDN-GVVVCASKNANN--SPLTGVIFAPFEEV 71
             +K+ ++PLFSS SS   P      SS K+ N    + ASK++    S L+GV+F PFEEV
Sbjct:    17 EKKDISPLFSSSSSISSP-----VSSGKSGNLSFPLRASKSSTTTTSTLSGVVFEPFEEV 71

Query:    72 KKELDLVPTVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLX 131
             KKE+DLVP+  QLSLARH ++ +CEAA+NEQINVEYNVSYVYHA++AYFDRDNVALKGL 
Sbjct:    72 KKEMDLVPSGQQLSLARHLYSPECEAAVNEQINVEYNVSYVYHALYAYFDRDNVALKGLA 131

Query:   132 XXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALY 181
                             LMEYQNKRGG+VKLQ +++P SEFDH EKGDALY
Sbjct:   132 KFFKESSVEEREHAELLMEYQNKRGGRVKLQPMVLPQSEFDHPEKGDALY 181

GO:0006826 "iron ion transport" evidence=IEA;IGI;ISS

GO:0006879 "cellular iron ion homeostasis" evidence=IEA;ISS

GO:0008199 "ferric iron binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;ISS;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0046914 "transition metal ion binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0010039 "response to iron ion" evidence=IEP;RCA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0000302 "response to reactive oxygen species" evidence=IGI;RCA

GO:0009908 "flower development" evidence=IGI

GO:0015979 "photosynthesis" evidence=IGI;RCA

GO:0048366 "leaf development" evidence=IGI

GO:0055072 "iron ion homeostasis" evidence=IGI;RCA

GO:0009570 "chloroplast stroma" evidence=IDA

TAIR|locus:2149755 FER1 "ferretin 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 93/165 (56%), Positives = 110/165 (66%)

Query:    21 PLFSSVSSAFPPNPSLRFSSPKNDNG---VVVCASKNANNSPLTGVIFAPFEEVKKELDL 77
             PL    S++  P+ SL FS  K   G   VV  A+ + NN P+TGV+F PFEEVKK  DL
Sbjct:    20 PLLPHGSAS--PSVSLGFSR-KVGGGRAVVVAAATVDTNNMPMTGVVFQPFEEVKKA-DL 75

Query:    78 -VPTVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXX 136
              +P     SLAR +F D  EA INEQINVEYNVSYVYH+M+AYFDRDNVA+KGL      
Sbjct:    76 AIPITSHASLARQRFADASEAVINEQINVEYNVSYVYHSMYAYFDRDNVAMKGLAKFFKE 135

Query:   137 XXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALY 181
                       K MEYQN+RGG+VKL  I+ P+SEF+HAEKGDALY
Sbjct:   136 SSEEERGHAEKFMEYQNQRGGRVKLHPIVSPISEFEHAEKGDALY 180

GO:0006826 "iron ion transport" evidence=IEA;IGI;ISS

GO:0006879 "cellular iron ion homeostasis" evidence=IEA;ISS

GO:0008199 "ferric iron binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;ISS;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0046914 "transition metal ion binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005506 "iron ion binding" evidence=TAS

GO:0010039 "response to iron ion" evidence=IEP;RCA

GO:0042542 "response to hydrogen peroxide" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP;IMP

GO:0016020 "membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0000302 "response to reactive oxygen species" evidence=IGI;RCA

GO:0009908 "flower development" evidence=IGI

GO:0015979 "photosynthesis" evidence=IGI;RCA

GO:0048366 "leaf development" evidence=IGI

GO:0055072 "iron ion homeostasis" evidence=IGI;RCA

GO:0010043 "response to zinc ion" evidence=IEP

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|F1NL14 FTH1 "Ferritin" [Gallus gallus (taxid:9031)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 42/93 (45%), Positives = 51/93 (54%)

Query:    85 SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXX 144
             S  R  +  DCEAAIN QIN+E   SYVY +M  YFDRD+VALK                
Sbjct:    35 SQVRQNYHQDCEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREH 94

Query:   145 XXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKG 177
               KLM+ QN+RGG++ LQ I  P  + D  E G
Sbjct:    95 AEKLMKLQNQRGGRIFLQDIKKP--DRDDWENG 125

GO:0006826 "iron ion transport" evidence=IEA

GO:0008199 "ferric iron binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0006879 "cellular iron ion homeostasis" evidence=IEA

UNIPROTKB|P08267 FTH "Ferritin heavy chain" [Gallus gallus (taxid:9031)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 42/93 (45%), Positives = 51/93 (54%)

Query:    85 SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXX 144
             S  R  +  DCEAAIN QIN+E   SYVY +M  YFDRD+VALK                
Sbjct:     6 SQVRQNYHQDCEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREH 65

Query:   145 XXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKG 177
               KLM+ QN+RGG++ LQ I  P  + D  E G
Sbjct:    66 AEKLMKLQNQRGGRIFLQDIKKP--DRDDWENG 96

GO:0006826 "iron ion transport" evidence=IEA

GO:0008199 "ferric iron binding" evidence=IEA

GO:0006879 "cellular iron ion homeostasis" evidence=IEA

GO:0004322 "ferroxidase activity" evidence=IEA

GO:0006955 "immune response" evidence=ISS

GO:0008285 "negative regulation of cell proliferation" evidence=ISS

UNIPROTKB|P02794 FTH1 "Ferritin heavy chain" [Homo sapiens (taxid:9606)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 42/98 (42%), Positives = 51/98 (52%)

Query:    80 TVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXX 139
             T    S  R  +  D EAAIN QIN+E   SYVY +M  YFDRD+VALK           
Sbjct:     2 TTASTSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSH 61

Query:   140 XXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKG 177
                    KLM+ QN+RGG++ LQ I  P  + D  E G
Sbjct:    62 EEREHAEKLMKLQNQRGGRIFLQDIKKP--DCDDWESG 97

GO:0006826 "iron ion transport" evidence=IEA

GO:0008199 "ferric iron binding" evidence=IEA

GO:0004322 "ferroxidase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006955 "immune response" evidence=ISS

GO:0008285 "negative regulation of cell proliferation" evidence=ISS

GO:0006880 "intracellular sequestering of iron ion" evidence=IDA

GO:0048147 "negative regulation of fibroblast proliferation" evidence=IDA

GO:0005506 "iron ion binding" evidence=TAS

GO:0008043 "intracellular ferritin complex" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006879 "cellular iron ion homeostasis" evidence=TAS

GO:0006892 "post-Golgi vesicle-mediated transport" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:95588 Fth1 "ferritin heavy chain 1" [Mus musculus (taxid:10090)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 42/98 (42%), Positives = 51/98 (52%)

Query:    80 TVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXX 139
             T    S  R  +  D EAAIN QIN+E   SYVY +M  YFDRD+VALK           
Sbjct:     2 TTASPSQVRQNYHQDAEAAINRQINLELYASYVYLSMSCYFDRDDVALKNFAKYFLHQSH 61

Query:   140 XXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKG 177
                    KLM+ QN+RGG++ LQ I  P  + D  E G
Sbjct:    62 EEREHAEKLMKLQNQRGGRIFLQDIKKP--DRDDWESG 97

GO:0004322 "ferroxidase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006826 "iron ion transport" evidence=IEA

GO:0006879 "cellular iron ion homeostasis" evidence=IEA

GO:0006880 "intracellular sequestering of iron ion" evidence=ISO

GO:0008199 "ferric iron binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0046914 "transition metal ion binding" evidence=IEA

GO:0048147 "negative regulation of fibroblast proliferation" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0060547 "negative regulation of necrotic cell death" evidence=ISO

ZFIN|ZDB-GENE-040718-72 zgc:92066 "zgc:92066" [Danio rerio (taxid:7955)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 47/143 (32%), Positives = 71/143 (49%)

Query:    41 PKNDNGVVVCASKNANNSPLT-----GVIFAPFE-EVKKELDLVPTV---PQLSLARHKF 91
             P++     +  ++N +++P       GV ++  + EV  E+ L  +    P+    R  +
Sbjct:     2 PRHTGRNCLLQNRNRHSTPCRVYSSLGVAYSSVDAEVNSEILLSHSDGANPRPVSVRQNY 61

Query:    92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEY 151
               DCEA IN+ IN+E    Y Y +M  YFDRD+VAL G                 K ME+
Sbjct:    62 DRDCEALINKMINLELYAGYTYTSMAFYFDRDDVALPGFAKFFKKNSEEEREHAEKFMEF 121

Query:   152 QNKRGGKVKLQSILMP-LSEFDH 173
             QNKRGG++ LQ I  P   E+D+
Sbjct:   122 QNKRGGRIVLQDIKKPERDEWDN 144

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0006826 "iron ion transport" evidence=IEA

GO:0008199 "ferric iron binding" evidence=IEA

GO:0046914 "transition metal ion binding" evidence=IEA

GO:0006879 "cellular iron ion homeostasis" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|I3LR69 FTH1 "Ferritin" [Sus scrofa (taxid:9823)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 42/93 (45%), Positives = 50/93 (53%)

Query:    85 SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXX 144
             S  R  +  D EAAIN QIN+E   SYVY +M  YFDRD+VALK                
Sbjct:     7 SQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREH 66

Query:   145 XXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKG 177
               KLM+ QN+RGG++ LQ I  P  E D  E G
Sbjct:    67 AEKLMKLQNQRGGRIFLQDIKKP--ERDDWENG 97

GO:0006879 "cellular iron ion homeostasis" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008199 "ferric iron binding" evidence=IEA

GO:0006826 "iron ion transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q41709	FRI2_VIGUN	1, ., 1, 6, ., 3, ., 1	0.7594	0.8415	0.616	N/A	no
Q948P6	FRI3_SOYBN	1, ., 1, 6, ., 3, ., 1	0.7458	0.9562	0.6835	yes	no
Q8H1T3	FRI2_TOBAC	1, ., 1, 6, ., 3, ., 1	0.7307	0.9672	0.6833	N/A	no
Q9S756	FRI4_ARATH	1, ., 1, 6, ., 3, ., 1	0.7065	0.8743	0.6177	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.16.3.1	0.946
3rd Layer	1.16.3	0.963

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	183
cd01056	161	cd01056, Euk_Ferritin, eukaryotic ferritins	8e-43
cd00904	160	cd00904, Ferritin, Ferritin iron storage proteins	6e-28
pfam00210	142	pfam00210, Ferritin, Ferritin-like domain	1e-21
cd01055	156	cd01055, Nonheme_Ferritin, nonheme-containing ferr	1e-21
COG1528	167	COG1528, Ftn, Ferritin-like protein [Inorganic ion	4e-16
PRK10304	165	PRK10304, PRK10304, ferritin; Provisional	4e-04
pfam07861	276	pfam07861, WND, WisP family N-Terminal Region	0.002
cd00657	130	cd00657, Ferritin_like, Ferritin-like superfamily	0.004

>gnl|CDD|153114 cd01056, Euk_Ferritin, eukaryotic ferritins

 Score =  139 bits (354), Expect = 8e-43
 Identities = 54/89 (60%), Positives = 68/89 (76%), Gaps = 4/89 (4%)

Query: 93  DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQ 152
           ++CEAA+N+QIN+E N SYVY +M AYFDRD+VAL G AKFF++ S+EEREHAEKL++YQ
Sbjct: 2   EECEAALNKQINLELNASYVYLSMAAYFDRDDVALPGFAKFFRKLSDEEREHAEKLIKYQ 61

Query: 153 NKRGGKVKLQSILMPLSEFDHAEKGDALY 181
           NKRGG+V LQ I  P    +  E G  L 
Sbjct: 62  NKRGGRVVLQDIKKP----EKDEWGSGLE 86

Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged residues on the protein shell inner surface of the L subunits promote ferrihydrite nucleation. Most plant ferritins combine both oxidase and nucleation functions in one chain: they have four interior glutamate residues as well as seven ferroxidase center residues. Length = 161

>gnl|CDD|153098 cd00904, Ferritin, Ferritin iron storage proteins

 Score =  101 bits (254), Expect = 6e-28
 Identities = 46/79 (58%), Positives = 61/79 (77%)

Query: 92  TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEY 151
           ++  EAA+N Q+N+E   SY Y +M  YFDRD+VALKG+A FFKE ++EEREHAEK  +Y
Sbjct: 1   SEKVEAAVNRQLNLELYASYTYLSMATYFDRDDVALKGVAHFFKEQAQEEREHAEKFYKY 60

Query: 152 QNKRGGKVKLQSILMPLSE 170
           QN+RGG+V+LQ I  P S+
Sbjct: 61  QNERGGRVELQDIEKPPSD 79

Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Bacterial non-heme ferritins are composed only of H chains. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged residues on the protein shell inner surface of the L subunits promote ferrihydrite nucleation. Most plant ferritins combine both oxidase and nucleation functions in one chain: they have four interior glutamate residues as well as seven ferroxidase center residues. Length = 160

>gnl|CDD|215791 pfam00210, Ferritin, Ferritin-like domain

 Score = 85.4 bits (212), Expect = 1e-21
 Identities = 33/69 (47%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 96  EAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKR 155
             A+NEQ+  E   SY Y  M  YFD     L GLA+FF E +EEEREHA+KL E     
Sbjct: 1   IEALNEQLADELTASYQYLQMAWYFD--GPGLPGLAEFFDEQAEEEREHADKLAERILAL 58

Query: 156 GGKVKLQSI 164
           GGK  L  +
Sbjct: 59  GGKPVLTPV 67

This family contains ferritins and other ferritin-like proteins such as members of the DPS family and bacterioferritins. Length = 142

>gnl|CDD|153113 cd01055, Nonheme_Ferritin, nonheme-containing ferritins

 Score = 85.6 bits (213), Expect = 1e-21
 Identities = 40/77 (51%), Positives = 52/77 (67%), Gaps = 2/77 (2%)

Query: 96  EAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKR 155
           E A+NEQIN+E   SY+Y AM A+FD     L G A FF+  ++EEREHA K  +Y N R
Sbjct: 5   EKALNEQINLELYSSYLYLAMAAWFDSKG--LDGFANFFRVQAQEEREHAMKFFDYLNDR 62

Query: 156 GGKVKLQSILMPLSEFD 172
           GG+V+L +I  P SEF+
Sbjct: 63  GGRVELPAIEAPPSEFE 79

Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite. Length = 156

>gnl|CDD|224445 COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]

 Score = 71.5 bits (176), Expect = 4e-16
 Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 98  AINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGG 157
            +NEQ+N+E+  S +Y  M A+    + +L G AKF +  ++EE  HA KL  Y N+RG 
Sbjct: 9   LLNEQMNLEFYASNLYLQMAAWCS--SESLPGFAKFLRAQAQEELTHAMKLFNYLNERGA 66

Query: 158 KVKLQSILMPLSEFD 172
           + +L++I  P ++F 
Sbjct: 67  RPELKAIEAPPNKFS 81

Length = 167

>gnl|CDD|182367 PRK10304, PRK10304, ferritin; Provisional

 Score = 38.9 bits (90), Expect = 4e-04
 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 2/73 (2%)

Query: 99  INEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGK 158
           +NEQ+N+E   S +Y  M A+        +G A F +  ++EE  H ++L +Y    G  
Sbjct: 10  LNEQMNLELYSSLLYQQMSAWCSYH--TFEGAAAFLRRHAQEEMTHMQRLFDYLTDTGNL 67

Query: 159 VKLQSILMPLSEF 171
            ++ ++  P +E+
Sbjct: 68  PRINTVESPFAEY 80

Length = 165

>gnl|CDD|149110 pfam07861, WND, WisP family N-Terminal Region

 Score = 37.5 bits (86), Expect = 0.002
 Identities = 27/67 (40%), Positives = 31/67 (46%), Gaps = 12/67 (17%)

Query: 8  ALSLVSPQKEAL----NP----LFSSVSSAFPPNPSLRFSSPKNDNGVVVCASKNANNS- 58
          AL L S Q E      NP    L SSVS A  P+ + +FS      G   C S NA +S 
Sbjct: 3  ALLLSSLQYETAFAPQNPPALSLLSSVSRASLPHSNSKFSRVSFAGGQEACLSDNAGSSL 62

Query: 59 ---PLTG 62
             PLTG
Sbjct: 63 LIDPLTG 69

This family is found at the N-terminus of the Tropheryma whipplei WisP family proteins. Length = 276

>gnl|CDD|153097 cd00657, Ferritin_like, Ferritin-like superfamily of diiron-containing four-helix-bundle proteins

 Score = 35.5 bits (82), Expect = 0.004
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 97  AAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRG 156
             +N+ +  EY     Y  + A     ++          E ++EER HA+ L E   + G
Sbjct: 1   RLLNDALAGEYAAIIAYGQLAARAPDPDLK-----DELLEIADEERRHADALAERLRELG 55

Query: 157 GK 158
           G 
Sbjct: 56  GT 57

Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyubiquinone hydroxylases (DMQH), DNA protecting proteins (DPS), and ubiquinol oxidases (AOX), and the aerobic cyclase system, Fe-containing subunit (ACSF). Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	183
PRK15022	167	ferritin-like protein; Provisional	99.95
KOG2332	178	consensus Ferritin [Inorganic ion transport and me	99.94
cd00904	160	Ferritin Ferritin iron storage proteins. Ferritins	99.93
PRK10304	165	ferritin; Provisional	99.93
cd01056	161	Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferr	99.91
COG1528	167	Ftn Ferritin-like protein [Inorganic ion transport	99.91
cd01055	156	Nonheme_Ferritin nonheme-containing ferritins. Non	99.84
PRK10635	158	bacterioferritin; Provisional	99.64
TIGR00754	157	bfr bacterioferritin. Bacterioferritin is a homomu	99.62
cd00907	153	Bacterioferritin Bacterioferritin, ferritin-like d	99.51
cd01041	134	Rubrerythrin Rubrerythrin, ferritin-like diiron-bi	99.48
PF00210	142	Ferritin: Ferritin-like domain; InterPro: IPR00833	99.44
cd01052	148	DPSL DPS-like protein, ferritin-like diiron-bindin	99.26
cd01046	123	Rubrerythrin_like rubrerythrin-like, diiron-bindin	99.1
COG2193	157	Bfr Bacterioferritin (cytochrome b1) [Inorganic io	99.0
PRK13456	186	DNA protection protein DPS; Provisional	98.2
cd00657	130	Ferritin_like Ferritin-like superfamily of diiron-	98.11
cd07908	154	Mn_catalase_like Manganese catalase-like protein,	97.52
cd01045	139	Ferritin_like_AB Uncharacterized family of ferriti	97.25
PF02915	137	Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Ru	97.19
cd01043	139	DPS DPS protein, ferritin-like diiron-binding doma	96.91
cd01044	125	Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin	96.5
COG1633	176	Uncharacterized conserved protein [Function unknow	95.78
PF09537	111	DUF2383: Domain of unknown function (DUF2383); Int	95.04
PRK09448	162	DNA starvation/stationary phase protection protein	94.82
COG1592	166	Rubrerythrin [Energy production and conversion]	94.51
cd01051	156	Mn_catalase Manganese catalase, ferritin-like diir	94.13
TIGR02284	139	conserved hypothetical protein. Members of this pr	90.96
cd01042	165	DMQH Demethoxyubiquinone hydroxylase, ferritin-lik	90.6
cd01046	123	Rubrerythrin_like rubrerythrin-like, diiron-bindin	88.45
cd01041	134	Rubrerythrin Rubrerythrin, ferritin-like diiron-bi	88.03
COG2406	172	Protein distantly related to bacterial ferritins [	84.7
PF02915	137	Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Ru	83.8
cd07910	180	MiaE MiaE tRNA-modifying nonheme diiron monooxygen	83.72
PF03232	172	COQ7: Ubiquinone biosynthesis protein COQ7; InterP	82.96
cd01045	139	Ferritin_like_AB Uncharacterized family of ferriti	82.88
cd00657	130	Ferritin_like Ferritin-like superfamily of diiron-	81.44
cd07908	154	Mn_catalase_like Manganese catalase-like protein,	80.78
cd01055	156	Nonheme_Ferritin nonheme-containing ferritins. Non	80.67

>PRK15022 ferritin-like protein; Provisional

Probab=99.95  E-value=2.3e-28  Score=199.83  Aligned_cols=84  Identities=18%  Similarity=0.350  Sum_probs=80.5

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCCc
Q 030066           90 KFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLS  169 (183)
Q Consensus        90 ~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~~  169 (183)
                      +.+++++.+||+|||+|++|||+|++||+||+  +.+|+|||+||+.||+|||+||+||++||++|||+|.+++|++|+.
T Consensus         1 m~~~~~~~~LN~QIn~E~~aSy~YLsMa~~~~--~~~L~GfA~ff~~qa~EEreHA~k~~~yl~~rGg~v~l~~I~~P~~   78 (167)
T PRK15022          1 MATAGMLLKLNSQMNLEFYASNLYLHLSEWCS--EQSLNGTATFLRAQAQSNVTQMMRMFNFMKSAGATPIVKAIDVPGE   78 (167)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCChhHHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeCCCCCCcc
Confidence            46789999999999999999999999999998  4599999999999999999999999999999999999999999999


Q ss_pred             ccCCcc
Q 030066          170 EFDHAE  175 (183)
Q Consensus       170 ef~~~e  175 (183)
                      +|++++
T Consensus        79 ~~~s~~   84 (167)
T PRK15022         79 KLNSLE   84 (167)
T ss_pred             ccCCHH
Confidence            999876

>KOG2332 consensus Ferritin [Inorganic ion transport and metabolism]

Probab=99.94  E-value=9.2e-28  Score=198.06  Aligned_cols=92  Identities=60%  Similarity=0.869  Sum_probs=87.0

Q ss_pred             CCcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeee
Q 030066           81 VPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVK  160 (183)
Q Consensus        81 ~~~~S~~Rq~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~  160 (183)
                      ..+.+++||++.++|+.+||.|||+|+++||+|++|++||++++++++||++||.++|+|||+||++||+|+|+|||+|.
T Consensus         3 ~~~~~~~r~~~~~~~~~~in~~in~el~~sy~Ylsma~yf~rd~v~l~g~~~ff~~~s~eereha~klm~~~n~rgg~i~   82 (178)
T KOG2332|consen    3 TKMSSEARQNYHDEAEAAINSQINLELNASYVYLSMAAYFDRDDVALKGFAKFFLKQSQEEREHAEKLMKTQNMRGGRIE   82 (178)
T ss_pred             ccchHHHhhcchhhccchhhhhccchhccchhhhhhhhccCccccchhhhhhhhhhhhhhhhhhHHHHHHHHHHhCCccc
Confidence            44568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCcCCCCc-ccC
Q 030066          161 LQSILMPLS-EFD  172 (183)
Q Consensus       161 l~~I~~P~~-ef~  172 (183)
                      +++|.+|.. +|.
T Consensus        83 l~~i~~P~~~ew~   95 (178)
T KOG2332|consen   83 LQDIKKPELDEWG   95 (178)
T ss_pred             cccccccccchhH
Confidence            999999943 553

>cd00904 Ferritin Ferritin iron storage proteins

Probab=99.93  E-value=2.7e-26  Score=183.99  Aligned_cols=84  Identities=56%  Similarity=0.894  Sum_probs=81.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCCc-c
Q 030066           92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLS-E  170 (183)
Q Consensus        92 s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~~-e  170 (183)
                      +++|+++||+|||.|++++|+|++||+||++++++|+|||+||+.+|+|||+||++|++||++|||+|+++.|++|.. +
T Consensus         1 ~~~~~~~Ln~qi~~El~as~~Yl~ma~~~~~~~~~l~g~a~~f~~~s~eE~~HA~~l~~yi~~rgg~~~l~~i~~~~~~~   80 (160)
T cd00904           1 SEKVEAAVNRQLNLELYASYTYLSMATYFDRDDVALKGVAHFFKEQAQEEREHAEKFYKYQNERGGRVELQDIEKPPSDE   80 (160)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHCCCccccCcCCCCcccc
Confidence            578999999999999999999999999999999999999999999999999999999999999999999999999998 8


Q ss_pred             cCCcc
Q 030066          171 FDHAE  175 (183)
Q Consensus       171 f~~~e  175 (183)
                      |++++
T Consensus        81 ~~~~~   85 (160)
T cd00904          81 WGGTL   85 (160)
T ss_pred             cCCHH
Confidence            98875

Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Bacterial non-heme ferritins are composed only of H chains. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary rol

>PRK10304 ferritin; Provisional

Probab=99.93  E-value=5e-26  Score=184.84  Aligned_cols=84  Identities=24%  Similarity=0.498  Sum_probs=80.9

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCCc
Q 030066           90 KFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLS  169 (183)
Q Consensus        90 ~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~~  169 (183)
                      +++++++++||+|||.|++|+|+|++|++||+  ++||+|||+||+.+|+|||+||+||++|+++|||+|.+++|++|..
T Consensus         1 ~~~~~i~~~Ln~qin~El~As~~Yl~ma~~~~--~~gl~g~A~~f~~qs~EE~~HA~kl~~~i~~rgg~~~~~~i~~p~~   78 (165)
T PRK10304          1 MLKPEMIEKLNEQMNLELYSSLLYQQMSAWCS--YHTFEGAAAFLRRHAQEEMTHMQRLFDYLTDTGNLPRINTVESPFA   78 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeCCCCCCcc
Confidence            47899999999999999999999999999999  5699999999999999999999999999999999999999999999


Q ss_pred             ccCCcc
Q 030066          170 EFDHAE  175 (183)
Q Consensus       170 ef~~~e  175 (183)
                      +|++++
T Consensus        79 ~~~s~~   84 (165)
T PRK10304         79 EYSSLD   84 (165)
T ss_pred             ccCCHH
Confidence            999875

>cd01056 Euk_Ferritin eukaryotic ferritins

Probab=99.91  E-value=1.6e-24  Score=173.22  Aligned_cols=84  Identities=62%  Similarity=0.986  Sum_probs=80.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCC-cc
Q 030066           92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPL-SE  170 (183)
Q Consensus        92 s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~-~e  170 (183)
                      +++|+++||+|||.|++|+|+|++||.||++.+++++|||+||+.+|+|||+||++|++|++.|||+|+++.|++|. .+
T Consensus         1 ~~~i~~~Ln~~i~~El~as~~Yl~~a~~~~~~~~~l~g~a~~f~~~a~eE~~HA~~l~~~i~~rgg~~~~~~i~~~~~~~   80 (161)
T cd01056           1 HEECEAALNKQINLELNASYVYLSMAAYFDRDDVALPGFAKFFRKLSDEEREHAEKLIKYQNKRGGRVVLQDIKKPEKDE   80 (161)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCCCcc
Confidence            46899999999999999999999999999988789999999999999999999999999999999999999999998 88


Q ss_pred             cCCcc
Q 030066          171 FDHAE  175 (183)
Q Consensus       171 f~~~e  175 (183)
                      |.+++
T Consensus        81 ~~~~~   85 (161)
T cd01056          81 WGSGL   85 (161)
T ss_pred             cCCHH
Confidence            98765

Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r

>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]

Probab=99.91  E-value=3.6e-24  Score=175.19  Aligned_cols=84  Identities=33%  Similarity=0.579  Sum_probs=80.3

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCCc
Q 030066           90 KFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLS  169 (183)
Q Consensus        90 ~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~~  169 (183)
                      +.++++..+||+|||.|++++|+|++||+||+  ..+|+|+|+||+.||+||+.||+||++|+++||++|.+.+|.+|+.
T Consensus         1 mls~~~~~~LN~Q~N~E~yas~lYl~maa~~~--~~~l~G~A~f~~~qa~EE~~H~~k~~~yl~~~g~~~~l~~I~~P~~   78 (167)
T COG1528           1 MLSEKMIELLNEQMNLEFYASNLYLQMAAWCS--SESLPGFAKFLRAQAQEELTHAMKLFNYLNERGARPELKAIEAPPN   78 (167)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCcCCCcc
Confidence            35789999999999999999999999999999  4599999999999999999999999999999999999999999999


Q ss_pred             ccCCcc
Q 030066          170 EFDHAE  175 (183)
Q Consensus       170 ef~~~e  175 (183)
                      +|+++.
T Consensus        79 ~~~s~~   84 (167)
T COG1528          79 KFSSLK   84 (167)
T ss_pred             ccCCHH
Confidence            999874

>cd01055 Nonheme_Ferritin nonheme-containing ferritins

Probab=99.84  E-value=1.3e-20  Score=148.24  Aligned_cols=82  Identities=49%  Similarity=0.800  Sum_probs=77.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCCccc
Q 030066           92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEF  171 (183)
Q Consensus        92 s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~~ef  171 (183)
                      +++|+++||+||+.|+.|+|+|++||.||++.  +++||++||+.+|+||++||+++++|+++|||+|.++.|++|..+|
T Consensus         1 ~~~~~~~Ln~~~~~El~A~~~Yl~~a~~~~~~--~~~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg~~~~~~~~~~~~~~   78 (156)
T cd01055           1 SEKLEKALNEQINLELYSSYLYLAMAAWFDSK--GLDGFANFFRVQAQEEREHAMKFFDYLNDRGGRVELPAIEAPPSEF   78 (156)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CChhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCCCCCCccc
Confidence            47899999999999999999999999999964  9999999999999999999999999999999999999999998888


Q ss_pred             CCcc
Q 030066          172 DHAE  175 (183)
Q Consensus       172 ~~~e  175 (183)
                      .++.
T Consensus        79 ~~~~   82 (156)
T cd01055          79 ESLL   82 (156)
T ss_pred             CCHH
Confidence            7764

Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.

>PRK10635 bacterioferritin; Provisional

Probab=99.64  E-value=1e-15  Score=123.86  Aligned_cols=79  Identities=22%  Similarity=0.076  Sum_probs=74.7

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCCc
Q 030066           90 KFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLS  169 (183)
Q Consensus        90 ~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~~  169 (183)
                      +.++++.+.||++++.|+.|+++|+.+|.+|+  ++|+++++.+|+.+|.||++||++|+++++.+||.|+++.+.+|..
T Consensus         2 ~~~~~vi~~LN~~L~~El~Ai~QY~~ha~~~~--~~G~~~la~~~~~ea~eEm~HA~~l~eRIl~LgG~P~~~~~~~~~~   79 (158)
T PRK10635          2 KGDVKIINYLNKLLGNELVAINQYFLHARMFK--NWGLMRLNDVEYHESIDEMKHADKYIERILFLEGIPNLQDLGKLNI   79 (158)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCC
Confidence            35789999999999999999999999999999  7899999999999999999999999999999999999999987765


Q ss_pred             c
Q 030066          170 E  170 (183)
Q Consensus       170 e  170 (183)
                      .
T Consensus        80 g   80 (158)
T PRK10635         80 G   80 (158)
T ss_pred             C
Confidence            4

>TIGR00754 bfr bacterioferritin

Probab=99.62  E-value=1.8e-15  Score=120.19  Aligned_cols=77  Identities=23%  Similarity=0.154  Sum_probs=73.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCCcc
Q 030066           92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSE  170 (183)
Q Consensus        92 s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~~e  170 (183)
                      ++++.++||+||+.|+.++|+|+.++.||.  .++++|++.||++++.||++||++|.+|++++||.|.++.|+.|...
T Consensus         4 ~~~~~~~LN~~l~~E~~a~~~Y~~~~~~~~--~~~~~g~a~~~~~~a~EE~~Ha~~laeri~~lGg~p~~~~i~~~~~~   80 (157)
T TIGR00754         4 DPDVIQHLNKQLTNELTAINQYFLHARMQK--NWGLKELADHEYHESIDEMKHADEIIERILFLEGLPNLQDLGKLRIG   80 (157)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCcCCCCCCC
Confidence            678999999999999999999999999995  67999999999999999999999999999999999999999888766

Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.

>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain

Probab=99.51  E-value=9.1e-14  Score=108.37  Aligned_cols=77  Identities=25%  Similarity=0.221  Sum_probs=71.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCCcc
Q 030066           92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSE  170 (183)
Q Consensus        92 s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~~e  170 (183)
                      ++++++.||++|+.|+.+++.|+.++.||+  +.+++++++||+.++.||++||+.+.+|++.+||.|.+..+..|...
T Consensus         3 ~~~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~--~~~~~~~~~~f~~~a~ee~~Ha~~lae~i~~lGg~p~~~~~~~~~~~   79 (153)
T cd00907           3 DPKVIEALNKALTGELTAINQYFLHARMLE--DWGLEKLAERFRKESIEEMKHADKLIERILFLEGLPNLQRLGKLRIG   79 (153)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcCCCCCcC
Confidence            578999999999999999999999999997  45899999999999999999999999999999999999888777654

Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best

>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain

Probab=99.48  E-value=1e-13  Score=107.48  Aligned_cols=74  Identities=18%  Similarity=0.224  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCCcccCCc
Q 030066           95 CEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHA  174 (183)
Q Consensus        95 ~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~~ef~~~  174 (183)
                      +.+.||+.+..|++++++|++|+.|+++  .|++|+|+||+.++.+|+.||+++++|++++||.|.     .|..+|+++
T Consensus         2 t~~~L~~a~~~E~~a~~~Y~~~a~~a~~--~g~~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~-----~~~~~~~~~   74 (134)
T cd01041           2 TEKNLLAAFAGESQARNRYTYFAEKARK--EGYEQIARLFRATAENEKEHAKGHFKLLKGLGGGDT-----GPPIGIGDT   74 (134)
T ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----CCCCCcchH
Confidence            4578999999999999999999999995  599999999999999999999999999999999999     666677655


Q ss_pred             c
Q 030066          175 E  175 (183)
Q Consensus       175 e  175 (183)
                      .
T Consensus        75 ~   75 (134)
T cd01041          75 L   75 (134)
T ss_pred             H
Confidence            3

Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.

>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []

Probab=99.44  E-value=2e-13  Score=102.84  Aligned_cols=72  Identities=42%  Similarity=0.539  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeee-----CCcCCCCc
Q 030066           96 EAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKL-----QSILMPLS  169 (183)
Q Consensus        96 e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l-----~~I~~P~~  169 (183)
                      +++||++|+.|+.+++.|+.++.+|+  +.+++|+++||+++++|+++|++++.+|++.|||.|..     ..+.+|..
T Consensus         1 i~~Ln~~l~~e~~~~~~y~~~~~~~~--~~~~~~l~~~~~~~a~e~~~h~~~l~e~i~~lgg~p~~~~~~~~~~~~~~~   77 (142)
T PF00210_consen    1 IEALNEQLALELQASQQYLNMHWNFD--GPNFPGLAKFFQDQAEEEREHADELAERILMLGGKPSGSPVEIPEIPKPPE   77 (142)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-SSTSHHHHHHHHSSSS
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhc--CCCchhhHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHhhhhhcccc
Confidence            47899999999999999999999999  57999999999999999999999999999999995544     44555544

It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....

>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain

Probab=99.26  E-value=3e-11  Score=93.70  Aligned_cols=69  Identities=25%  Similarity=0.300  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCC
Q 030066           93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQS  163 (183)
Q Consensus        93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~  163 (183)
                      +++.+.||++++.|+.++++|+.++.++..  .++.++++||++++.||++||+++.++++.+||+|....
T Consensus         5 ~~~~~~Ln~~la~e~~~~~~y~~~~~~~~g--~~f~~l~~~~~~~~~ee~~Had~laEri~~lGg~p~~~~   73 (148)
T cd01052           5 DELIELLNKAFADEWLAYYYYTILAKHVKG--PEGEGIKEELEEAAEEELNHAELLAERIYELGGTPPRDP   73 (148)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCh
Confidence            578999999999999999999999999994  589999999999999999999999999999999999855

DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical

>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain

Probab=99.10  E-value=3.3e-10  Score=87.57  Aligned_cols=56  Identities=25%  Similarity=0.238  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 030066           95 CEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQ  152 (183)
Q Consensus        95 ~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~  152 (183)
                      +++.||.||+.|+++++.|++|+.||+.  .|++++|+||+.++.+|+.||+++.+++
T Consensus         2 ~~~~L~~a~~~E~~a~~~Y~~~a~~a~~--eG~~~~A~~f~~~a~eE~~HA~~~~~~l   57 (123)
T cd01046           2 LEEDLEANFKGETTEVGMYLAMARVAQR--EGYPEVAEELKRIAMEEAEHAARFAELL   57 (123)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6789999999999999999999999995  4999999999999999999999999976

Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.

>COG2193 Bfr Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]

Probab=99.00  E-value=2.2e-09  Score=87.14  Aligned_cols=74  Identities=24%  Similarity=0.181  Sum_probs=70.8

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCC
Q 030066           91 FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILM  166 (183)
Q Consensus        91 ~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~  166 (183)
                      -.+++...||+++..||.|.++|+-++..+.  |||+.-++++|+++|.+|+.||++++++++..+|.|+++.+.+
T Consensus         3 G~~~Vi~~LN~~L~~EL~ainQYflHsrM~~--~WG~~~L~~~~~~esi~Em~HAd~lieRIlfLeG~Pnlq~~~~   76 (157)
T COG2193           3 GDPKVIRLLNEALGLELAAINQYFLHSRMYK--NWGLTKLAAHEYHESIEEMKHADQLIERILFLEGLPNLQDLGK   76 (157)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CcChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccc
Confidence            3478999999999999999999999999999  8999999999999999999999999999999999999999875

>PRK13456 DNA protection protein DPS; Provisional

Probab=98.20  E-value=8.7e-06  Score=68.25  Aligned_cols=70  Identities=21%  Similarity=0.296  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCc
Q 030066           93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSI  164 (183)
Q Consensus        93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I  164 (183)
                      +++.+.||+.+..|+.+.|.|...++...  .+.-++++.||.+...||+.||+.|.++|.+.||.+.+..-
T Consensus        19 ~~li~lLn~AlA~E~~a~~~Y~~~a~~~~--G~~~e~V~e~le~a~~EEl~HA~~lAeRI~qLGG~P~~~p~   88 (186)
T PRK13456         19 DKLVELLVKNAAAEFTTYYYYTILRAHLI--GLEGEGLKEIAEDARLEDRNHFEALVPRIYELGGKLPRDIR   88 (186)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChH
Confidence            58899999999999999999999999988  45678999999999999999999999999999999987544

>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins

Probab=98.11  E-value=2e-05  Score=55.78  Aligned_cols=60  Identities=28%  Similarity=0.345  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeC
Q 030066           98 AINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQ  162 (183)
Q Consensus        98 aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~  162 (183)
                      +||..+..|+.+...|..++..++     .+++..+|..++.+|+.|++.|.+++..+|+.+...
T Consensus         2 ~L~~~~~~E~~a~~~y~~~~~~~~-----~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~~~   61 (130)
T cd00657           2 LLNDALAGEYAAIIAYGQLAARAP-----DPDLKDELLEIADEERRHADALAERLRELGGTPPLP   61 (130)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            689999999999999999999876     588999999999999999999999999999988654

Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub

>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain

Probab=97.52  E-value=0.00059  Score=53.79  Aligned_cols=68  Identities=15%  Similarity=0.093  Sum_probs=59.9

Q ss_pred             CHHHHHHHHHHHH---HHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeC
Q 030066           92 TDDCEAAINEQIN---VEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQ  162 (183)
Q Consensus        92 s~e~e~aLNeQIn---~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~  162 (183)
                      +++....|++|+.   .|+.+..+|+..+.-...   +.+.+++.|...|.+|++|++.|.+.+.+.||.+.+.
T Consensus        11 ~~~~~~~~~~~~~g~~~E~~ai~~Y~y~~~~~~~---~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~~   81 (154)
T cd07908          11 NPRYAELLLDDYAGTNSELTAISQYIYQHLISEE---KYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYR   81 (154)
T ss_pred             ChHHHHHHHHHhCCcchHHHHHHHHHHHHHHccC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcch
Confidence            3567788888887   999999999988887763   5799999999999999999999999999999988653

This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio

>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria

Probab=97.25  E-value=0.0014  Score=48.51  Aligned_cols=54  Identities=31%  Similarity=0.361  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 030066           98 AINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRG  156 (183)
Q Consensus        98 aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RG  156 (183)
                      +||..|..|..+...|..++..+++     +++..+|+..+.+|+.|++.|...+...|
T Consensus         2 ~l~~a~~~E~~~~~~Y~~~a~~~~~-----~~~~~~~~~la~eE~~H~~~l~~~~~~~~   55 (139)
T cd01045           2 ILALAIKMEEEAAEFYLELAEKAKD-----PELKKLFEELAEEEKEHAERLEELYEKLF   55 (139)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            6899999999999999999998874     38999999999999999999999998887

Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.

>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []

Probab=97.19  E-value=0.002  Score=47.90  Aligned_cols=62  Identities=23%  Similarity=0.320  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeee
Q 030066           97 AAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKL  161 (183)
Q Consensus        97 ~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l  161 (183)
                      +.|+..|..|..+...|..++.-+.++  + |.+.+.|+..|.+|.+|+..|.+.+.++++....
T Consensus         1 e~L~~A~~~E~~~~~~Y~~~a~~~~~~--~-p~~~~~f~~lA~~E~~H~~~~~~l~~~~~~~~~~   62 (137)
T PF02915_consen    1 EILEMAIKMELEAAKFYRELAEKAKDE--G-PELKELFRRLAEEEQEHAKFLEKLLRKLGPGEEP   62 (137)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHHHHHHHHHCHCSTTHHT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhhhc--c-cHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCc
Confidence            468889999999999999999999965  6 8899999999999999999999999888765543

The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....

>cd01043 DPS DPS protein, ferritin-like diiron-binding domain

Probab=96.91  E-value=0.0026  Score=49.10  Aligned_cols=63  Identities=21%  Similarity=0.208  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeC
Q 030066           98 AINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQ  162 (183)
Q Consensus        98 aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~  162 (183)
                      .||..+.-++.....|....-+-.  ..++..+..+|.+.++++++|+..+.+++...||.|..+
T Consensus         2 ~Ln~~lA~~~~~~~~~~~~HW~v~--G~~f~~lh~~l~e~~~~~~~~~D~lAERi~~lgg~P~~~   64 (139)
T cd01043           2 ALNQLLADLYVLYLKLKNYHWNVK--GPNFFALHELFEELYDELREAIDEIAERIRALGGKPLGT   64 (139)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcCcc--CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence            577777778777777775444444  568999999999999999999999999999999999876

DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) disp

>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain

Probab=96.50  E-value=0.016  Score=44.39  Aligned_cols=58  Identities=19%  Similarity=0.205  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeee
Q 030066           98 AINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVK  160 (183)
Q Consensus        98 aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~  160 (183)
                      .+|+.++.|..+..+|..++....+     +...+.|...|++|++|++-+-+++..+|+.+.
T Consensus         2 ~~~~~~~~E~~~~~~Y~~la~~~~~-----~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~~   59 (125)
T cd01044           2 RLRKFQKDEITEAAIYRKLAKREKD-----PENREILLKLAEDERRHAEFWKKFLGKRGVPPP   59 (125)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence            4788999999999999999998763     348999999999999999999999999888764

Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.

>COG1633 Uncharacterized conserved protein [Function unknown]

Probab=95.78  E-value=0.059  Score=44.61  Aligned_cols=63  Identities=19%  Similarity=0.244  Sum_probs=57.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCee
Q 030066           92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKV  159 (183)
Q Consensus        92 s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V  159 (183)
                      ...++++|+..|..|..+-..|..++...+++     -+.+.|...+.+|++|...|-+.+.+++++.
T Consensus        22 ~~~~~e~L~~Ai~~E~eA~~fY~~lae~~~~~-----~~rk~~~~la~eE~~H~~~f~~l~~~~~~~~   84 (176)
T COG1633          22 ELSIEELLAIAIRGELEAIKFYEELAERIEDE-----EIRKLFEDLADEEMRHLRKFEKLLEKLTPKE   84 (176)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            34789999999999999999999999999964     4889999999999999999999998888776

>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain

Probab=95.04  E-value=0.24  Score=36.79  Aligned_cols=63  Identities=21%  Similarity=0.238  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeee
Q 030066           94 DCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKL  161 (183)
Q Consensus        94 e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l  161 (183)
                      ++...||+.|.....+...|-..+--+.+     +.+..+|.+.+.+...|+..|-.++...||.|.-
T Consensus         1 ~~i~~Ln~Ll~~~~d~~~~Y~~a~~~~~~-----~~lk~~f~~~~~~~~~~~~~L~~~i~~~Gg~p~~   63 (111)
T PF09537_consen    1 ETIEALNDLLKGLHDGIEGYEKAAEKAED-----PELKSLFQEFAQERQQHAEELQAEIQELGGEPEE   63 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH--S-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTT--H--
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCc
Confidence            46789999999999999999999988873     6788999999999999999999999999998753

; PDB: 3FSE_B.

>PRK09448 DNA starvation/stationary phase protection protein Dps; Provisional

Probab=94.82  E-value=0.21  Score=40.55  Aligned_cols=66  Identities=11%  Similarity=0.146  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeee
Q 030066           93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVK  160 (183)
Q Consensus        93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~  160 (183)
                      ..+.+.||..+.-++.....|....-+-.  ...+..+..+|.++++++++|+..+-+++...||.|.
T Consensus        21 ~~~~~~Ln~~LA~~~~l~~k~~~~hW~v~--G~~f~~lH~~lee~~~~~~~~~D~iAERi~~lGg~p~   86 (162)
T PRK09448         21 KATIELLNQQLAQFIDLSLITKQAHWNMK--GANFIAVHEMLDGFRTALEDHLDTMAERAVQLGGVAL   86 (162)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhcc--CCCHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCC
Confidence            45788999999888887777776555444  3478899999999999999999999999999999873

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=94.51  E-value=0.16  Score=42.02  Aligned_cols=60  Identities=17%  Similarity=0.211  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 030066           95 CEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRG  156 (183)
Q Consensus        95 ~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RG  156 (183)
                      +++-|-+-..-|=.+-..|+.||...++.  |++.+|+.|+..|.+|..||..+.+.+.+-+
T Consensus         5 t~~~L~~aF~GEs~a~~rY~~~A~~A~~e--G~~~va~lfr~iA~~E~~HA~~~~~~l~~~~   64 (166)
T COG1592           5 TEENLRKAFAGESMAVMRYLIFAKVAEEE--GYPEIARLFRAIAEAEAVHAKNHLKLLGKLL   64 (166)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            44555555666888999999999999976  9999999999999999999999998876533

>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain

Probab=94.13  E-value=0.2  Score=40.52  Aligned_cols=61  Identities=15%  Similarity=0.050  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHH---HHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 030066           93 DDCEAAINEQI---NVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGG  157 (183)
Q Consensus        93 ~e~e~aLNeQI---n~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG  157 (183)
                      +.....|.+|+   +-|+.+..+|+.-++-++    ..+.+...|...+.||+.|++.|-+.+...||
T Consensus        19 p~~A~~l~~~~gG~~gEl~ai~qYl~q~~~~~----~~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~   82 (156)
T cd01051          19 PRFAKLLQEQLGGAFGELSAAMQYLFQSFNFR----EDPKYRDLLLDIGTEELSHLEMVATLIAMLLK   82 (156)
T ss_pred             HHHHHHHHHHhCCccHHHHHHHHHHHHHhhcC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            45555666665   369999999999999984    35889999999999999999999999999998

Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz

>TIGR02284 conserved hypothetical protein

Probab=90.96  E-value=1.1  Score=35.45  Aligned_cols=60  Identities=17%  Similarity=0.205  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeee
Q 030066           96 EAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVK  160 (183)
Q Consensus        96 e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~  160 (183)
                      ...||+.|.....+-.-|-..+-..+     =+.+..+|.+.+.+...|+..|-.++...||.|.
T Consensus         2 i~~Ln~Lie~~~D~~~gY~~aae~v~-----~~~lk~~f~~~~~~~~~~~~eL~~~v~~lGg~p~   61 (139)
T TIGR02284         2 IHSLNDLIEISIDGKDGFEESAEEVK-----DPELATLFRRIAGEKSAIVSELQQVVASLGGKPE   61 (139)
T ss_pred             hHHHHHHHHHcccHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            57899999999999999999888765     4679999999999999999999999999999875

Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.

>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain

Probab=90.60  E-value=1  Score=37.14  Aligned_cols=52  Identities=21%  Similarity=0.259  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeee
Q 030066          105 VEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKL  161 (183)
Q Consensus       105 ~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l  161 (183)
                      -|+.|..+|..-.+.+.+     +.+..++++.+++|.+|-..|-+.+.++|+++.+
T Consensus        11 GE~gA~~IY~gQ~~~~~~-----~~~~~~l~~~~~~E~~Hl~~f~~~i~~~~~rps~   62 (165)
T cd01042          11 GEVGAVRIYRGQLAVARD-----PAVRPLIKEMLDEEKDHLAWFEELLPELGVRPSL   62 (165)
T ss_pred             chHHHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCch
Confidence            489999999988888763     8899999999999999999999999999999875

Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.

>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain

Probab=88.45  E-value=2.8  Score=32.14  Aligned_cols=59  Identities=15%  Similarity=0.210  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030066           93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQN  153 (183)
Q Consensus        93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n  153 (183)
                      +.+.+.|..-+..|..++-.|..++..+...  +....+.||+.....|.+|++.+-+.+.
T Consensus        62 ~~~~~~le~a~~~E~~~~~~~~~~~~~A~~e--gd~~~~~~~~~~~~~E~~H~~~~~~~l~  120 (123)
T cd01046          62 EDTKENLEMMLEGEAGANEGKKDAATEAKAE--GLDEAHDFFHEAAKDEARHGKMLKGLLE  120 (123)
T ss_pred             ccHHHHHHHHHHhHHHHHHhHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5678888888999999999999999999954  8999999999999999999998877654

Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.

>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain

Probab=88.03  E-value=7.4  Score=29.81  Aligned_cols=59  Identities=20%  Similarity=0.262  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030066           93 DDCEAAINEQINVEYN-VSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQN  153 (183)
Q Consensus        93 ~e~e~aLNeQIn~EL~-ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n  153 (183)
                      ..+...|..-+..|.. +.-.|..++..+...  +-...+.||.....+|..|+..|=+.+.
T Consensus        72 ~~~~~~l~~~~~~E~~e~~~~y~~~~~~A~~e--~d~~~~~~f~~i~~~E~~H~~~l~~~l~  131 (134)
T cd01041          72 GDTLENLKAAIAGETYEYTEMYPEFAEVAEEE--GFKEAARSFEAIAEAEKVHAERYKKALE  131 (134)
T ss_pred             chHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4677888888999986 779999999999954  8999999999999999999998876654

Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.

>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]

Probab=84.70  E-value=9.3  Score=31.72  Aligned_cols=65  Identities=20%  Similarity=0.315  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCee
Q 030066           93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKV  159 (183)
Q Consensus        93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V  159 (183)
                      +++.+.|-..-..|+.+.|-|.-++.-.-.  ..=.|.-.|..+.-+|-+.|++.+..++.+.||.+
T Consensus        16 ~kli~~Llka~AaE~tt~YYYtilr~~l~G--le~e~~keiae~Ar~E~r~H~e~i~~Ri~elg~~~   80 (172)
T COG2406          16 DKLIELLLKAAAAEWTTYYYYTILRYALKG--LEGEGIKEIAEEAREEDRKHFELIAPRIYELGGDL   80 (172)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            355556666667899999999888776552  23455667777777888999999999999999975

>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []

Probab=83.80  E-value=8.9  Score=28.02  Aligned_cols=52  Identities=25%  Similarity=0.319  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 030066           94 DCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLME  150 (183)
Q Consensus        94 e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLik  150 (183)
                      ....++.-.+..|-.+.-.|..++..+.     -+...++|...+.+|..|...|-+
T Consensus        84 ~~~~~l~~a~~~E~~~~~~Y~~~a~~~~-----~~~~~~~~~~l~~~E~~H~~~l~~  135 (137)
T PF02915_consen   84 NLEEALEMAIKEEKDAYEFYAELARKAP-----DPEIRKLFEELAKEEKEHEDLLEK  135 (137)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHHHTT-----SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6789999999999999999999998876     466889999999999999998864

The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....

>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain

Probab=83.72  E-value=11  Score=31.79  Aligned_cols=68  Identities=15%  Similarity=0.187  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCC
Q 030066           94 DCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMP  167 (183)
Q Consensus        94 e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P  167 (183)
                      +....|-++-+-|..|+-+=++|=+-+-    ..+++..-+-..+.||++|-++.++.+.+||.  .+..+.++
T Consensus        18 nl~~iL~DHA~CE~KAA~~A~~L~~rY~----~~~~Lv~~m~~LarEEL~HFeqV~~im~~Rgi--~l~~~~~~   85 (180)
T cd07910          18 NLDEILIDHAHCEKKAASSAMSLIFRYP----EKPELVEAMSDLAREELQHFEQVLKIMKKRGI--PLGPDSKD   85 (180)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcC----CcHhHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCCCCCC
Confidence            5677888999999999999887755554    35789999999999999999999999999996  34444433

MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.

>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]

Probab=82.96  E-value=4.6  Score=33.41  Aligned_cols=54  Identities=24%  Similarity=0.263  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeee
Q 030066          104 NVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKL  161 (183)
Q Consensus       104 n~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l  161 (183)
                      .-|+.|-.+|..-...+..    .+....++++..++|.+|-..|-+.+.++|.++.+
T Consensus        12 AGE~~A~~iY~gQ~~~~~~----~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~   65 (172)
T PF03232_consen   12 AGEVGAVRIYRGQLAVARR----DPELRPFLKEMAEEEKDHLAWFEQLLPELRVRPSL   65 (172)
T ss_pred             HHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHHHHHhHHcCCCCcH
Confidence            5699999999988887773    67899999999999999999999999999998764

It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process

>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria

Probab=82.88  E-value=7.4  Score=28.37  Aligned_cols=56  Identities=27%  Similarity=0.285  Sum_probs=47.2

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 030066           91 FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEY  151 (183)
Q Consensus        91 ~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY  151 (183)
                      .......+|...|..|-.+.-.|..++.-+.+     +.....|....++|+.|...|-+.
T Consensus        83 ~~~~~~~~l~~a~~~E~~~~~~Y~~~~~~~~d-----~~~~~~~~~l~~~E~~H~~~l~~~  138 (139)
T cd01045          83 SLMDPLEALRLAIEIEKDAIEFYEELAEKAED-----PEVKKLFEELAEEERGHLRLLEEL  138 (139)
T ss_pred             hccCHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44567889999999999999999999987663     258899999999999999988653

Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.

>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins

Probab=81.44  E-value=13  Score=25.61  Aligned_cols=54  Identities=20%  Similarity=0.289  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 030066           93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEY  151 (183)
Q Consensus        93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY  151 (183)
                      ......|...+..|-.+...|..+...+.     -+....+|.....+|..|...+.++
T Consensus        76 ~~~~~~l~~~~~~E~~~~~~y~~~~~~~~-----d~~~~~~~~~~~~~E~~H~~~~~~~  129 (130)
T cd00657          76 DDPAEALRAALEVEARAIAAYRELIEQAD-----DPELRRLLERILADEQRHAAWFRKL  129 (130)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34556777789999999999999998876     3568999999999999999988764

Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub

>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain

Probab=80.78  E-value=9.7  Score=29.73  Aligned_cols=56  Identities=13%  Similarity=0.114  Sum_probs=47.3

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 030066           91 FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEY  151 (183)
Q Consensus        91 ~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY  151 (183)
                      ......+.|...+..|-.+...|..++...+     =+.....|...+.+|.+|...|-+.
T Consensus        98 ~~~~~~~~L~~~~~~E~~ai~~Y~~~~~~~~-----d~~~r~ll~~I~~eE~~H~~~L~~~  153 (154)
T cd07908          98 YGESIKEMLKLDIASEKAAIAKYKRQAETIK-----DPYIRALLNRIILDEKLHIKILEEL  153 (154)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3446777999999999999999999999654     2678889999999999999887653

This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio

>cd01055 Nonheme_Ferritin nonheme-containing ferritins

Probab=80.67  E-value=11  Score=29.26  Aligned_cols=59  Identities=8%  Similarity=0.034  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030066           93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQN  153 (183)
Q Consensus        93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n  153 (183)
                      +.+.++|..-++.|..+...|..+...+...  +-+..+.||..--+++.+|.+.+-+++.
T Consensus        79 ~~~~~~l~~al~~E~~~~~~~~~l~~~A~~~--~D~~~~~~l~~~l~~q~e~~~~~~~~l~  137 (156)
T cd01055          79 ESLLEVFEAALEHEQKVTESINNLVDLALEE--KDYATFNFLQWFVKEQVEEEALARDILD  137 (156)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3577899999999999999999999999854  6788899999888888898888777665

Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	183
3a68_A	212	Crystal Structure Of Plant Ferritin Reveals A Novel		1e-51
3a9q_A	212	Crystal Structure Analysis Of E173a Variant Of The		1e-51
3vnx_A	204	Crystal Structure Of Ferritin From Multicellular Gr		2e-26
3shx_A	176	Frog M-Ferritin With Magnesium, L134p Mutant Length		7e-15
1mfr_A	176	Crystal Structure Of M Ferritin Length = 176		7e-15
3sh6_A	176	Frog M-Ferritin, D122r Mutant, With Magnesium Lengt		7e-15
3ka9_A	176	Frog M-Ferritin, Eeh Mutant, With Cobalt Length = 1		8e-15
3ka6_A	176	Frog M-Ferritin, Eed Mutant, With Cobalt Length = 1		8e-15
3ka8_A	176	Frog M-Ferritin, Eqh Mutant, With Cobalt Length = 1		8e-15
1rcc_A	173	Bullfrog Red Cell L Ferritin TartrateMGPH 5.5 Lengt		2e-14
1rcd_A	173	Bullfrog Red Cell L Ferritin TartrateMGPH 5.5 Lengt		2e-14
2cei_A	183	Recombinant Human H Ferritin, K86q Mutant, Soaked W		5e-14
2clu_A	183	Recombinant Human H Ferritin, K86q And E107d Mutant		5e-14
3ajq_A	182	Crystal Structure Of Human H Ferritin E140q Mutant		5e-14
3ajo_A	182	Crystal Structure Of Wild-Type Human Ferritin H Cha		5e-14
3ajp_A	182	Crystal Structure Of Human H Ferritin E140a Mutant		5e-14
1rci_A	173	Bullfrog Red Cell L Ferritin TartrateMGPH 5.5 Lengt		6e-14
3es3_A	183	Directing Noble Metal Ion Chemistry Within A Design		6e-14
3erz_A	183	Directing Noble Metal Ion Chemistry Within A Design		7e-14
3se1_A	176	Frog M-Ferritin With Magnesium, R72d Mutant Length		7e-14
2z6m_A	176	Crystal Structure Of Human Ferritin H8 As Biotempla		8e-14
2chi_A	183	Recombinant Human H Ferritin, K86q And E27d Mutant		1e-13
2cn7_A	183	Recombinant Human H Ferritin, K86q, E27d And E107d		1e-13
1r03_A	182	Crystal Structure Of A Human Mitochondrial Ferritin		3e-13
4dyx_A	172	Crystal Structure Of The Cu-adduct Of Human H-ferri		3e-13
1bg7_A	176	Localized Unfolding At The Junction Of Three Ferrit		5e-13
4dyy_A	172	Crystal Structure Of The Cu-adduct Of Human H-ferri		3e-12
4dz0_A	172	Crystal Structure Of The Cu-adduct Of Human H-ferri		4e-12
3kxu_A	191	Crystal Structure Of Human Ferritin Ftl498instc Pat		8e-10
3hx2_A	192	Crystal Structure Of Human Ferritin Phe167serfsx26		8e-10
1h96_A	182	Recombinant Mouse L-Chain Ferritin Length = 182		1e-09
2ffx_J	173	Structure Of Human Ferritin L. Chain Length = 173		1e-09
2fg4_A	174	Structure Of Human Ferritin L Chain Length = 174		1e-09
2v2l_A	174	Mutant (E53,56,57,60q) Recombinant Horse Spleen Apo		7e-09
2v2p_A	174	Mutant (E53,56,57,60q And R59m) Recombinant Horse S		7e-09
3af9_X	174	Crystal Structure Of Pd(Allyl)APO-C48afr Length = 1		7e-09
2zg8_X	174	Crystal Structure Of Pd(Allyl)APO-H49afr Length = 1		7e-09
2zg9_X	174	Crystal Structure Of Pd(Allyl)APO-H114afr Length =		8e-09
2zur_X	174	Crystal Structure Of Rh(Nbd)APO-Fr Length = 174		8e-09
2g4h_A	174	Anomalous Substructure Of Apoferritin Length = 174		9e-09
2v2n_A	174	Mutant R59m Recombinant Horse Spleen Apoferritin Co		9e-09
2za6_A	175	Recombinant Horse L-Chain Apoferritin Length = 175		9e-09
2za7_A	171	Recombinant Horse L-Chain Apoferritin N-Terminal De		9e-09
3af8_X	174	Crystal Structure Of Pd(Ally)APO-C126afr Length = 1		1e-08
2gyd_A	170	Complex Of Equine Apoferritin With The H-Diaziflura		1e-08
1ies_A	174	Tetragonal Crystal Structure Of Native Horse Spleen		1e-08
3np2_X	174	Crystal Structure Of Pd(Allyl)APO-E45cC48A-Rhlfr Le		2e-08
3np0_X	174	Crystal Structure Of Pd(Allyl)APO-E45cH49AR52H-Rhlf		3e-08
3noz_X	174	Crystal Structure Of Pd(Allyl)APO-E45cR52H-Rhlfr Le		3e-08
2za8_A	167	Recombinant Horse L-Chain Apoferritin N-Terminal De		4e-08
3kx9_A	173	Engineering A Closed Form Of The Archaeoglobus Fulg		8e-07
1s3q_A	173	Crystal Structures Of A Novel Open Pore Ferritin Fr		1e-05
1z4a_A	164	Ferritin From T. Maritima Length = 164		3e-05
1vlg_A	176	Crystal Structure Of Ferritin (Tm1128) From Thermot		9e-05

>pdb|3A68|A Chain A, Crystal Structure Of Plant Ferritin Reveals A Novel Metal Binding Site That Functions As A Transit Site For Metal Transfer In Ferritin Length = 212

Iteration: 1
 Score =  198 bits (504), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 94/131 (71%), Positives = 105/131 (80%)
Query: 51  ASKNANNSPLTGVIFAPFEEVKKELDLVPTVPQLSLARHKFTDDCEAAINEQINVEYNVS 110
           A  + N+  LTGVIF PFEEVKKELDLVPTVPQ SLAR K+ D+ E+A+NEQINVEYNVS
Sbjct: 1   AKGSTNHRALTGVIFEPFEEVKKELDLVPTVPQASLARQKYVDESESAVNEQINVEYNVS 60
Query: 111 YVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSE 170
           YVYHAMFAYFDRDNVAL+GL                KLMEYQNKRGGKVKLQSI+MPLS+
Sbjct: 61  YVYHAMFAYFDRDNVALRGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSIVMPLSD 120
Query: 171 FDHAEKGDALY 181
           FDHA+KGDAL+
Sbjct: 121 FDHADKGDALH 131

>pdb|3A9Q|A Chain A, Crystal Structure Analysis Of E173a Variant Of The Soybean Ferritin Sfer4 Length = 212

Iteration: 1
 Score =  198 bits (504), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 94/131 (71%), Positives = 105/131 (80%)
Query: 51  ASKNANNSPLTGVIFAPFEEVKKELDLVPTVPQLSLARHKFTDDCEAAINEQINVEYNVS 110
           A  + N+  LTGVIF PFEEVKKELDLVPTVPQ SLAR K+ D+ E+A+NEQINVEYNVS
Sbjct: 1   AKGSTNHRALTGVIFEPFEEVKKELDLVPTVPQASLARQKYVDESESAVNEQINVEYNVS 60
Query: 111 YVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSE 170
           YVYHAMFAYFDRDNVAL+GL                KLMEYQNKRGGKVKLQSI+MPLS+
Sbjct: 61  YVYHAMFAYFDRDNVALRGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSIVMPLSD 120
Query: 171 FDHAEKGDALY 181
           FDHA+KGDAL+
Sbjct: 121 FDHADKGDALH 131

>pdb|3VNX|A Chain A, Crystal Structure Of Ferritin From Multicellular Green Algae, Ulva Pertusa Length = 204

Iteration: 1
 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/123 (47%), Positives = 77/123 (62%), Gaps = 1/123 (0%)
Query: 60  LTGVIFAPFEEVKKELDLVPTVPQL-SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFA 118
           +TG++F PF EV+ EL  V   P   S AR ++  +CEAAINEQIN+EY +SYVYHA+ +
Sbjct: 4   VTGMVFQPFSEVQGELSTVTQAPVTDSYARVEYHIECEAAINEQINIEYTISYVYHALHS 63
Query: 119 YFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGD 178
           YF RDNV L G                  LM+YQ KRGG+V+L+ +  P  EF + +KG+
Sbjct: 64  YFARDNVGLPGFAKFFKEASDEEREHAHMLMDYQTKRGGRVELKPLAAPEMEFANDDKGE 123
Query: 179 ALY 181
           ALY
Sbjct: 124 ALY 126

>pdb|3SHX|A Chain A, Frog M-Ferritin With Magnesium, L134p Mutant Length = 176

Iteration: 1
 Score = 76.6 bits (187), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 48/84 (57%)
Query: 84  LSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXX 143
           +S  R  +  DCEAA+N  +N+E   SY Y +M+A+FDRD+VAL  +             
Sbjct: 2   VSQVRQNYHSDCEAAVNRMLNLELYASYTYSSMYAFFDRDDVALHNVAEFFKEHSHEERE 61
Query: 144 XXXKLMEYQNKRGGKVKLQSILMP 167
              K M+YQNKRGG+V LQ I  P
Sbjct: 62  HAEKFMKYQNKRGGRVVLQDIKKP 85

>pdb|1MFR|A Chain A, Crystal Structure Of M Ferritin Length = 176

Iteration: 1
 Score = 76.6 bits (187), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 48/84 (57%)
Query: 84  LSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXX 143
           +S  R  +  DCEAA+N  +N+E   SY Y +M+A+FDRD+VAL  +             
Sbjct: 2   VSQVRQNYHSDCEAAVNRMLNLELYASYTYSSMYAFFDRDDVALHNVAEFFKEHSHEERE 61
Query: 144 XXXKLMEYQNKRGGKVKLQSILMP 167
              K M+YQNKRGG+V LQ I  P
Sbjct: 62  HAEKFMKYQNKRGGRVVLQDIKKP 85

>pdb|3SH6|A Chain A, Frog M-Ferritin, D122r Mutant, With Magnesium Length = 176

Iteration: 1
 Score = 76.6 bits (187), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 48/84 (57%)
Query: 84  LSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXX 143
           +S  R  +  DCEAA+N  +N+E   SY Y +M+A+FDRD+VAL  +             
Sbjct: 2   VSQVRQNYHSDCEAAVNRMLNLELYASYTYSSMYAFFDRDDVALHNVAEFFKEHSHEERE 61
Query: 144 XXXKLMEYQNKRGGKVKLQSILMP 167
              K M+YQNKRGG+V LQ I  P
Sbjct: 62  HAEKFMKYQNKRGGRVVLQDIKKP 85

>pdb|3KA9|A Chain A, Frog M-Ferritin, Eeh Mutant, With Cobalt Length = 176

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 48/84 (57%)
Query: 84  LSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXX 143
           +S  R  +  DCEAA+N  +N+E   SY Y +M+A+FDRD+VAL  +             
Sbjct: 2   VSQVRQNYHSDCEAAVNRMLNLELYASYTYSSMYAFFDRDDVALHNVAEFFKEHSHEERE 61
Query: 144 XXXKLMEYQNKRGGKVKLQSILMP 167
              K M+YQNKRGG+V LQ I  P
Sbjct: 62  HAEKFMKYQNKRGGRVVLQDIKKP 85

>pdb|3KA6|A Chain A, Frog M-Ferritin, Eed Mutant, With Cobalt Length = 176

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 48/84 (57%)
Query: 84  LSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXX 143
           +S  R  +  DCEAA+N  +N+E   SY Y +M+A+FDRD+VAL  +             
Sbjct: 2   VSQVRQNYHSDCEAAVNRMLNLELYASYTYSSMYAFFDRDDVALHNVAEFFKEHSHEERE 61
Query: 144 XXXKLMEYQNKRGGKVKLQSILMP 167
              K M+YQNKRGG+V LQ I  P
Sbjct: 62  HAEKFMKYQNKRGGRVVLQDIKKP 85

>pdb|3KA8|A Chain A, Frog M-Ferritin, Eqh Mutant, With Cobalt Length = 176

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 48/84 (57%)
Query: 84  LSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXX 143
           +S  R  +  DCEAA+N  +N+E   SY Y +M+A+FDRD+VAL  +             
Sbjct: 2   VSQVRQNYHSDCEAAVNRMLNLELYASYTYSSMYAFFDRDDVALHNVAEFFKEHSHEERE 61
Query: 144 XXXKLMEYQNKRGGKVKLQSILMP 167
              K M+YQNKRGG+V LQ I  P
Sbjct: 62  HAEKFMKYQNKRGGRVVLQDIKKP 85

>pdb|1RCC|A Chain A, Bullfrog Red Cell L Ferritin TartrateMGPH 5.5 Length = 173

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 49/83 (59%)
Query: 85  SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXX 144
           S  R  F  DCEA +N  +N++++ SYVY +M +YF+RD+VAL                 
Sbjct: 3   SQVRQNFHQDCEAGLNRTVNLKFHSSYVYLSMASYFNRDDVALSNFAKFFRERSAAAKAH 62
Query: 145 XXKLMEYQNKRGGKVKLQSILMP 167
             KL+EYQN+RGG+V LQS+  P
Sbjct: 63  AEKLIEYQNQRGGRVFLQSVEKP 85

>pdb|1RCD|A Chain A, Bullfrog Red Cell L Ferritin TartrateMGPH 5.5 Length = 173

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 49/83 (59%)
Query: 85  SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXX 144
           S  R  F  DCEA +N  +N++++ SYVY +M +YF+RD+VAL                 
Sbjct: 3   SQVRQNFHQDCEAGLNRTVNLKFHSSYVYLSMASYFNRDDVALSNFAKFFRERSEEEKEH 62
Query: 145 XXKLMEYQNKRGGKVKLQSILMP 167
             KL+EYQN+RGG+V LQS+  P
Sbjct: 63  AEKLIEYQNQRGGRVFLQSVEKP 85

>pdb|2CEI|A Chain A, Recombinant Human H Ferritin, K86q Mutant, Soaked With Zn Length = 183

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 47/88 (53%)
Query: 80  TVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXX 139
           T    S  R  +  D EAAIN QIN+E   SYVY +M  YFDRD+VALK           
Sbjct: 2   TTASTSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSH 61
Query: 140 XXXXXXXKLMEYQNKRGGKVKLQSILMP 167
                  KLM+ QN+RGG++ LQ I  P
Sbjct: 62  EEREHAEKLMKLQNQRGGRIFLQDIQKP 89

>pdb|2CLU|A Chain A, Recombinant Human H Ferritin, K86q And E107d Mutant Length = 183

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 47/88 (53%)
Query: 80  TVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXX 139
           T    S  R  +  D EAAIN QIN+E   SYVY +M  YFDRD+VALK           
Sbjct: 2   TTASTSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSH 61
Query: 140 XXXXXXXKLMEYQNKRGGKVKLQSILMP 167
                  KLM+ QN+RGG++ LQ I  P
Sbjct: 62  EEREHAEKLMKLQNQRGGRIFLQDIQKP 89

>pdb|3AJQ|A Chain A, Crystal Structure Of Human H Ferritin E140q Mutant Length = 182

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 47/88 (53%)
Query: 80  TVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXX 139
           T    S  R  +  D EAAIN QIN+E   SYVY +M  YFDRD+VALK           
Sbjct: 1   TTASTSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSH 60
Query: 140 XXXXXXXKLMEYQNKRGGKVKLQSILMP 167
                  KLM+ QN+RGG++ LQ I  P
Sbjct: 61  EEREHAEKLMKLQNQRGGRIFLQDIKKP 88

>pdb|3AJO|A Chain A, Crystal Structure Of Wild-Type Human Ferritin H Chain Length = 182

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 47/88 (53%)
Query: 80  TVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXX 139
           T    S  R  +  D EAAIN QIN+E   SYVY +M  YFDRD+VALK           
Sbjct: 1   TTASTSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSH 60
Query: 140 XXXXXXXKLMEYQNKRGGKVKLQSILMP 167
                  KLM+ QN+RGG++ LQ I  P
Sbjct: 61  EEREHAEKLMKLQNQRGGRIFLQDIKKP 88

>pdb|3AJP|A Chain A, Crystal Structure Of Human H Ferritin E140a Mutant Length = 182

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 47/88 (53%)
Query: 80  TVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXX 139
           T    S  R  +  D EAAIN QIN+E   SYVY +M  YFDRD+VALK           
Sbjct: 1   TTASTSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSH 60
Query: 140 XXXXXXXKLMEYQNKRGGKVKLQSILMP 167
                  KLM+ QN+RGG++ LQ I  P
Sbjct: 61  EEREHAEKLMKLQNQRGGRIFLQDIKKP 88

>pdb|1RCI|A Chain A, Bullfrog Red Cell L Ferritin TartrateMGPH 5.5 Length = 173

Iteration: 1
 Score = 73.6 bits (179), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 48/83 (57%)
Query: 85  SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXX 144
           S  R  F  DCEA +N  +N+++  SYVY +M +YF+RD+VAL                 
Sbjct: 3   SQVRQNFHQDCEAGLNRTVNLKFYSSYVYLSMASYFNRDDVALSNFAKFFRERSEEEKEH 62
Query: 145 XXKLMEYQNKRGGKVKLQSILMP 167
             KL+EYQN+RGG+V LQS+  P
Sbjct: 63  AEKLIEYQNQRGGRVFLQSVEKP 85

>pdb|3ES3|A Chain A, Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. The Complex With Gold Ions. Ferritin H8-H9x Mutant Length = 183

Iteration: 1
 Score = 73.6 bits (179), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 47/88 (53%)
Query: 80  TVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXX 139
           T    S  R  +  D EAAIN QIN+E   SYVY +M  YFDRD+VALK           
Sbjct: 2   TTASTSQVRQNYDQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSH 61
Query: 140 XXXXXXXKLMEYQNKRGGKVKLQSILMP 167
                  KLM+ QN+RGG++ LQ I  P
Sbjct: 62  EERCHAEKLMKLQNQRGGRIFLQDIQKP 89

>pdb|3ERZ|A Chain A, Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. Mercury Ions On The Three-Fold Channel Length = 183

Iteration: 1
 Score = 73.2 bits (178), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 47/88 (53%)
Query: 80  TVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXX 139
           T    S  R  +  D EAAIN QIN+E   SYVY +M  YFDRD+VALK           
Sbjct: 2   TTASTSQVRQNYDQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSH 61
Query: 140 XXXXXXXKLMEYQNKRGGKVKLQSILMP 167
                  KLM+ QN+RGG++ LQ I  P
Sbjct: 62  EERCHAEKLMKLQNQRGGRIFLQDIKKP 89

>pdb|3SE1|A Chain A, Frog M-Ferritin With Magnesium, R72d Mutant Length = 176

Iteration: 1
 Score = 73.2 bits (178), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 47/84 (55%)
Query: 84  LSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXX 143
           +S  R  +  DCEAA+N  +N+E   SY Y +M+A+FDRD+VAL  +             
Sbjct: 2   VSQVRQNYHSDCEAAVNRMLNLELYASYTYSSMYAFFDRDDVALHNVAEFFKEHSHEERE 61
Query: 144 XXXKLMEYQNKRGGKVKLQSILMP 167
              K M+YQNK GG+V LQ I  P
Sbjct: 62  HAEKFMKYQNKDGGRVVLQDIKKP 85

>pdb|2Z6M|A Chain A, Crystal Structure Of Human Ferritin H8 As Biotemplate For Noble Metal Nanoparticle Synthesis Length = 176

Iteration: 1
 Score = 73.2 bits (178), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 47/88 (53%)
Query: 80  TVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXX 139
           T    S  R  +  D EAAIN QIN+E   SYVY +M  YFDRD+VALK           
Sbjct: 1   TTASTSQVRQNYDQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSH 60
Query: 140 XXXXXXXKLMEYQNKRGGKVKLQSILMP 167
                  KLM+ QN+RGG++ LQ I  P
Sbjct: 61  EERCHAEKLMKLQNQRGGRIFLQDIKKP 88

>pdb|2CHI|A Chain A, Recombinant Human H Ferritin, K86q And E27d Mutant Length = 183

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 47/88 (53%)
Query: 80  TVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXX 139
           T    S  R  +  D EAAIN QIN++   SYVY +M  YFDRD+VALK           
Sbjct: 2   TTASTSQVRQNYHQDSEAAINRQINLDLYASYVYLSMSYYFDRDDVALKNFAKYFLHQSH 61
Query: 140 XXXXXXXKLMEYQNKRGGKVKLQSILMP 167
                  KLM+ QN+RGG++ LQ I  P
Sbjct: 62  EEREHAEKLMKLQNQRGGRIFLQDIQKP 89

>pdb|2CN7|A Chain A, Recombinant Human H Ferritin, K86q, E27d And E107d Mutant Length = 183

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 47/88 (53%)
Query: 80  TVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXX 139
           T    S  R  +  D EAAIN QIN++   SYVY +M  YFDRD+VALK           
Sbjct: 2   TTASTSQVRQNYHQDSEAAINRQINLDLYASYVYLSMSYYFDRDDVALKNFAKYFLHQSH 61
Query: 140 XXXXXXXKLMEYQNKRGGKVKLQSILMP 167
                  KLM+ QN+RGG++ LQ I  P
Sbjct: 62  EEREHAEKLMKLQNQRGGRIFLQDIQKP 89

>pdb|1R03|A Chain A, Crystal Structure Of A Human Mitochondrial Ferritin Length = 182

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/93 (44%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 85  SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXX 144
           S  R  F  D EAAIN QIN+E   SYVY +M  YF RD+VAL                 
Sbjct: 6   SRVRQNFHPDSEAAINRQINLELYASYVYLSMAYYFSRDDVALNNFSRYFLHQSREETEH 65
Query: 145 XXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKG 177
             KLM  QN+RGG+++LQ I  P  E D  E G
Sbjct: 66  AEKLMRLQNQRGGRIRLQDIKKP--EQDDWESG 96

>pdb|4DYX|A Chain A, Crystal Structure Of The Cu-adduct Of Human H-ferritin Variant 4his- Delta C-star Length = 172

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 46/83 (55%)
Query: 85  SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXX 144
           S  R  +  D EAAIN QIN+E   SYVY +M  YFDRD+VALK                
Sbjct: 2   SQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFHHQSHEEHEH 61
Query: 145 XXKLMEYQNKRGGKVKLQSILMP 167
             KLM+ QN+RGG++ LQ I  P
Sbjct: 62  AHKLMKLQNQRGGRIFLQDIQKP 84

>pdb|1BG7|A Chain A, Localized Unfolding At The Junction Of Three Ferritin Subunits. A Mechanism For Iron Release? Length = 176

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 45/83 (54%)
Query: 85  SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXX 144
           S  R  F  DCEAAIN  +N+E   SY Y +M  YFDRD++AL  +              
Sbjct: 3   SQVRQNFHRDCEAAINRMVNMELYASYTYLSMAFYFDRDDIALHNVAKFFKEQSHEEREH 62
Query: 145 XXKLMEYQNKRGGKVKLQSILMP 167
             KLM+ QNKRGG++ LQ +  P
Sbjct: 63  AEKLMKDQNKRGGRIVLQDVQKP 85

>pdb|4DYY|A Chain A, Crystal Structure Of The Cu-adduct Of Human H-ferritin Variant Mic1 Length = 172

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 44/80 (55%)
Query: 85  SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXX 144
           S  R  +  D EAAIN QIN+E   SYVY +M  YFDRD+VALK                
Sbjct: 2   SQVRQNYHQDSEAAINRQINLELYASYVYLSMSEYFDRDDVALKNFAKYFHHQSHEEHEH 61
Query: 145 XXKLMEYQNKRGGKVKLQSI 164
             KLM+ Q +RGG++ LQ I
Sbjct: 62  AHKLMKLQEQRGGRIFLQDI 81

>pdb|4DZ0|A Chain A, Crystal Structure Of The Cu-adduct Of Human H-ferritin Variant Mic1 Labeled With A Dansyl Fluorophore Length = 172

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 44/80 (55%)
Query: 85  SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXX 144
           S  R  +  D EAAIN QIN+E   SYVY +M  YFDRD+VALK                
Sbjct: 2   SQVRQNYHQDSEAAINRQINLELYASYVYLSMSEYFDRDDVALKNFACYFHHQSHEEHEH 61
Query: 145 XXKLMEYQNKRGGKVKLQSI 164
             KLM+ Q +RGG++ LQ I
Sbjct: 62  AHKLMKLQEQRGGRIFLQDI 81

>pdb|3KXU|A Chain A, Crystal Structure Of Human Ferritin Ftl498instc Pathogenic M Length = 191

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 43/80 (53%)
Query: 88  RHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXK 147
           R  ++ D EAA+N  +N+    SY Y ++  YFDRD+VAL+G+                +
Sbjct: 6   RQNYSTDVEAAVNSLVNLYLQASYTYLSLGFYFDRDDVALEGVSHFFRELAEEKREGYER 65
Query: 148 LMEYQNKRGGKVKLQSILMP 167
           L++ QN+RGG+   Q I  P
Sbjct: 66  LLKMQNQRGGRALFQDIKKP 85

>pdb|3HX2|A Chain A, Crystal Structure Of Human Ferritin Phe167serfsx26 Mutant. This File Is A Part 13 OF THE SPLIT ENTRY AND CONTAINS THE Copies 1 And 2 Of The Total Six Copies Of The Biological Unit That Are Present In The Crystallographic Asymmetric Unit. The Entire Structure Contains Six Copies Of The Biological Unit In The Crystallographic Asymmetric Unit And Is Described In Remark 400 Length = 192

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 43/80 (53%)
Query: 88  RHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXK 147
           R  ++ D EAA+N  +N+    SY Y ++  YFDRD+VAL+G+                +
Sbjct: 7   RQNYSTDVEAAVNSLVNLYLQASYTYLSLGFYFDRDDVALEGVSHFFRELAEEKREGYER 66
Query: 148 LMEYQNKRGGKVKLQSILMP 167
           L++ QN+RGG+   Q I  P
Sbjct: 67  LLKMQNQRGGRALFQDIKKP 86

>pdb|1H96|A Chain A, Recombinant Mouse L-Chain Ferritin Length = 182

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 85  SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXX 144
           S  R  ++ + EAA+N  +N+    SY Y ++  +FDRD+VAL+G+              
Sbjct: 2   SQIRQNYSTEVEAAVNRLVNLHLRASYTYLSLGFFFDRDDVALEGVGHFFRELAEEKREG 61
Query: 145 XXKLMEYQNKRGGKVKLQSILMP 167
             +L+E+QN RGG+   Q +  P
Sbjct: 62  AERLLEFQNDRGGRALFQDVQKP 84

>pdb|2FFX|J Chain J, Structure Of Human Ferritin L. Chain Length = 173

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 44/83 (53%)
Query: 85  SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXX 144
           S  R  ++ D EAA+N  +N+    SY Y ++  YFDRD+VAL+G+              
Sbjct: 2   SQIRQNYSTDVEAAVNSLVNLYLQASYTYLSLGFYFDRDDVALEGVSHFFRELAEEKREG 61
Query: 145 XXKLMEYQNKRGGKVKLQSILMP 167
             +L++ QN+RGG+   Q I  P
Sbjct: 62  YERLLKMQNQRGGRALFQDIKKP 84

>pdb|2FG4|A Chain A, Structure Of Human Ferritin L Chain Length = 174

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 44/83 (53%)
Query: 85  SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXX 144
           S  R  ++ D EAA+N  +N+    SY Y ++  YFDRD+VAL+G+              
Sbjct: 2   SQIRQNYSTDVEAAVNSLVNLYLQASYTYLSLGFYFDRDDVALEGVSHFFRELAEEKREG 61
Query: 145 XXKLMEYQNKRGGKVKLQSILMP 167
             +L++ QN+RGG+   Q I  P
Sbjct: 62  YERLLKMQNQRGGRALFQDIKKP 84

>pdb|2V2L|A Chain A, Mutant (E53,56,57,60q) Recombinant Horse Spleen Apoferritin Cocrystallized With Haemin In Acidic Conditions Length = 174

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 85  SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXX 144
           S  R  ++ + EAA+N  +N+    SY Y ++  YFDRD+VAL+G+              
Sbjct: 2   SQIRQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRQLAQQKRQG 61
Query: 145 XXKLMEYQNKRGGKVKLQSILMP 167
             +L++ QN+RGG+   Q +  P
Sbjct: 62  AERLLKMQNQRGGRALFQDLQKP 84

>pdb|2V2P|A Chain A, Mutant (E53,56,57,60q And R59m) Recombinant Horse Spleen Apoferritin Cocrystallized With Haemin In Acidic Conditions Length = 174

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 85  SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXX 144
           S  R  ++ + EAA+N  +N+    SY Y ++  YFDRD+VAL+G+              
Sbjct: 2   SQIRQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRQLAQQKMQG 61
Query: 145 XXKLMEYQNKRGGKVKLQSILMP 167
             +L++ QN+RGG+   Q +  P
Sbjct: 62  AERLLKMQNQRGGRALFQDLQKP 84

>pdb|3AF9|X Chain X, Crystal Structure Of Pd(Allyl)APO-C48afr Length = 174

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 43/80 (53%)
Query: 88  RHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXK 147
           R  ++ + EAA+N  +N+    SY Y ++  YFDRD+VAL+G+                +
Sbjct: 5   RQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVAHFFRELAEEKREGAER 64
Query: 148 LMEYQNKRGGKVKLQSILMP 167
           L++ QN+RGG+   Q +  P
Sbjct: 65  LLKMQNQRGGRALFQDLQKP 84

>pdb|2ZG8|X Chain X, Crystal Structure Of Pd(Allyl)APO-H49afr Length = 174

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 85  SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXX 144
           S  R  ++ + EAA+N  +N+    SY Y ++  YFDRD+VAL+G+              
Sbjct: 2   SQIRQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCAFFRELAEEKREG 61
Query: 145 XXKLMEYQNKRGGKVKLQSILMP 167
             +L++ QN+RGG+   Q +  P
Sbjct: 62  AERLLKMQNQRGGRALFQDLQKP 84

>pdb|2ZG9|X Chain X, Crystal Structure Of Pd(Allyl)APO-H114afr Length = 174

Iteration: 1
 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 85  SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXX 144
           S  R  ++ + EAA+N  +N+    SY Y ++  YFDRD+VAL+G+              
Sbjct: 2   SQIRQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREG 61
Query: 145 XXKLMEYQNKRGGKVKLQSILMP 167
             +L++ QN+RGG+   Q +  P
Sbjct: 62  AERLLKMQNQRGGRALFQDLQKP 84

>pdb|2ZUR|X Chain X, Crystal Structure Of Rh(Nbd)APO-Fr Length = 174

Iteration: 1
 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 88  RHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXK 147
           R  ++ + EAA+N  +N+    SY Y ++  YFDRD+VAL+G+                +
Sbjct: 5   RQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVXHFFRELAEEKREGAER 64
Query: 148 LMEYQNKRGGKVKLQSILMP 167
           L++ QN+RGG+   Q +  P
Sbjct: 65  LLKMQNQRGGRALFQDLQKP 84

>pdb|2G4H|A Chain A, Anomalous Substructure Of Apoferritin Length = 174

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 85  SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXX 144
           S  R  ++ + EAA+N  +N+    SY Y ++  YFDRD+VAL+G+              
Sbjct: 2   SQIRQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREG 61
Query: 145 XXKLMEYQNKRGGKVKLQSILMP 167
             +L++ QN+RGG+   Q +  P
Sbjct: 62  AERLLKMQNQRGGRALFQDLQKP 84

>pdb|2V2N|A Chain A, Mutant R59m Recombinant Horse Spleen Apoferritin Cocrystallized With Haemin In Acidic Conditions Length = 174

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 85  SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXX 144
           S  R  ++ + EAA+N  +N+    SY Y ++  YFDRD+VAL+G+              
Sbjct: 2   SQIRQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKMEG 61
Query: 145 XXKLMEYQNKRGGKVKLQSILMP 167
             +L++ QN+RGG+   Q +  P
Sbjct: 62  AERLLKMQNQRGGRALFQDLQKP 84

>pdb|2ZA6|A Chain A, Recombinant Horse L-Chain Apoferritin Length = 175

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 85  SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXX 144
           S  R  ++ + EAA+N  +N+    SY Y ++  YFDRD+VAL+G+              
Sbjct: 3   SQIRQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREG 62
Query: 145 XXKLMEYQNKRGGKVKLQSILMP 167
             +L++ QN+RGG+   Q +  P
Sbjct: 63  AERLLKMQNQRGGRALFQDLQKP 85

>pdb|2ZA7|A Chain A, Recombinant Horse L-Chain Apoferritin N-Terminal Deletion Mutant (Residues 1-4) Length = 171

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 43/80 (53%)
Query: 88  RHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXK 147
           R  ++ + EAA+N  +N+    SY Y ++  YFDRD+VAL+G+                +
Sbjct: 2   RQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAER 61
Query: 148 LMEYQNKRGGKVKLQSILMP 167
           L++ QN+RGG+   Q +  P
Sbjct: 62  LLKMQNQRGGRALFQDLQKP 81

>pdb|3AF8|X Chain X, Crystal Structure Of Pd(Ally)APO-C126afr Length = 174

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 43/80 (53%)
Query: 88  RHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXK 147
           R  ++ + EAA+N  +N+    SY Y ++  YFDRD+VAL+G+                +
Sbjct: 5   RQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAER 64
Query: 148 LMEYQNKRGGKVKLQSILMP 167
           L++ QN+RGG+   Q +  P
Sbjct: 65  LLKMQNQRGGRALFQDLQKP 84

>pdb|2GYD|A Chain A, Complex Of Equine Apoferritin With The H-Diaziflurane Photolabeling Reagent Length = 170

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 43/80 (53%)
Query: 88  RHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXK 147
           R  ++ + EAA+N  +N+    SY Y ++  YFDRD+VAL+G+                +
Sbjct: 4   RQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAER 63
Query: 148 LMEYQNKRGGKVKLQSILMP 167
           L++ QN+RGG+   Q +  P
Sbjct: 64  LLKMQNQRGGRALFQDLQKP 83

>pdb|1IES|A Chain A, Tetragonal Crystal Structure Of Native Horse Spleen Ferritin Length = 174

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 43/80 (53%)
Query: 88  RHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXK 147
           R  ++ + EAA+N  +N+    SY Y ++  YFDRD+VAL+G+                +
Sbjct: 5   RQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAER 64
Query: 148 LMEYQNKRGGKVKLQSILMP 167
           L++ QN+RGG+   Q +  P
Sbjct: 65  LLKMQNQRGGRALFQDLQKP 84

>pdb|3NP2|X Chain X, Crystal Structure Of Pd(Allyl)APO-E45cC48A-Rhlfr Length = 174

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 42/80 (52%)
Query: 88  RHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXK 147
           R  ++ + EAA+N  +N+    SY Y ++  YFDRD+VAL G+                +
Sbjct: 5   RQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALCGVAHFFRELAEEKREGAER 64
Query: 148 LMEYQNKRGGKVKLQSILMP 167
           L++ QN+RGG+   Q +  P
Sbjct: 65  LLKMQNQRGGRALFQDLQKP 84

>pdb|3NP0|X Chain X, Crystal Structure Of Pd(Allyl)APO-E45cH49AR52H-Rhlfr Length = 174

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 42/80 (52%)
Query: 88  RHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXK 147
           R  ++ + EAA+N  +N+    SY Y ++  YFDRD+VAL G+                +
Sbjct: 5   RQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALCGVCAFFHELAEEKREGAER 64
Query: 148 LMEYQNKRGGKVKLQSILMP 167
           L++ QN+RGG+   Q +  P
Sbjct: 65  LLKMQNQRGGRALFQDLQKP 84

>pdb|3NOZ|X Chain X, Crystal Structure Of Pd(Allyl)APO-E45cR52H-Rhlfr Length = 174

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 42/80 (52%)
Query: 88  RHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXK 147
           R  ++ + EAA+N  +N+    SY Y ++  YFDRD+VAL G+                +
Sbjct: 5   RQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALCGVCHFFHELAEEKREGAER 64
Query: 148 LMEYQNKRGGKVKLQSILMP 167
           L++ QN+RGG+   Q +  P
Sbjct: 65  LLKMQNQRGGRALFQDLQKP 84

>pdb|2ZA8|A Chain A, Recombinant Horse L-Chain Apoferritin N-Terminal Deletion Mutant (Residues 1-8) Length = 167

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%)
Query: 91  FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLME 150
           ++ + EAA+N  +N+    SY Y ++  YFDRD+VAL+G+                +L++
Sbjct: 1   YSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLK 60
Query: 151 YQNKRGGKVKLQSILMP 167
            QN+RGG+   Q +  P
Sbjct: 61  MQNQRGGRALFQDLQKP 77

>pdb|3KX9|A Chain A, Engineering A Closed Form Of The Archaeoglobus Fulgidus Ferritin By Site Directed Mutagenesis Length = 173

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 98  AINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGG 157
           A+N QIN E   +Y+Y +M +YF  D++ LKG                 K+ ++ ++RGG
Sbjct: 11  ALNRQINAEIYSAYLYLSMASYF--DSIGLKGFSNWMRVQWQEELMHAMKMFDFVSERGG 68
Query: 158 KVKLQSILMPLSEFD 172
           +VKL ++  P SE+D
Sbjct: 69  RVKLYAVEEPPSEWD 83

>pdb|1S3Q|A Chain A, Crystal Structures Of A Novel Open Pore Ferritin From The Hyperthermophilic Archaeon Archaeoglobus Fulgidus Length = 173

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 98  AINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGG 157
           A+N QIN E   +Y+Y +  +YFD  ++ LKG                 K  ++ ++RGG
Sbjct: 11  ALNRQINAEIYSAYLYLSXASYFD--SIGLKGFSNWXRVQWQEELXHAXKXFDFVSERGG 68
Query: 158 KVKLQSILMPLSEFD 172
           +VKL ++  P SE+D
Sbjct: 69  RVKLYAVEEPPSEWD 83

>pdb|1Z4A|A Chain A, Ferritin From T. Maritima Length = 164

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 92  TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEY 151
           ++    A+NEQ+N E   SY+Y +M  YFD +    KG                 K  EY
Sbjct: 5   SEKVRKALNEQLNREIYSSYLYLSMATYFDAE--GFKGFAHWMKKQAQEELTHAMKFYEY 62
Query: 152 QNKRGGKVKLQSILMP 167
             +RGG+V+L++I  P
Sbjct: 63  IYERGGRVELEAIEKP 78

>pdb|1VLG|A Chain A, Crystal Structure Of Ferritin (Tm1128) From Thermotoga Maritima At 2.00 A Resolution Length = 176

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 92  TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEY 151
           ++    A+N+Q+N E   SY+Y +M  YFD +    KG                 K  EY
Sbjct: 17  SEKVRKALNDQLNREIYSSYLYLSMATYFDAE--GFKGFAHWMKKQAQEELTHAMKFYEY 74
Query: 152 QNKRGGKVKLQSILMP 167
             +RGG+V+L++I  P
Sbjct: 75  IYERGGRVELEAIEKP 90

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	183
3a68_A	212	Sferh-4, ferritin-4, chloroplastic; 4-helix bundle	2e-63
3vnx_A	204	Ferritin; 4-helix bundle, iron storage, oxidoreduc	2e-58
2cih_A	183	Ferritin heavy chain; apoferritin, ferroxidase, DI	4e-43
1rcd_A	173	L ferritin; iron storage; 2.00A {Rana catesbeiana}	8e-42
3ka8_A	176	Ferritin, middle subunit; iron storage, DIIRON, ir	2e-41
1z6o_M	191	Ferritin heavy chain; metal binding protein, iron	1e-40
2v2p_A	174	Ferritin light chain; metal transport, iron, haemi	1e-40
3kxu_A	191	Ferritin; iron storage protein, disorder, iron, me	6e-40
3e6s_A	168	Ferritin; iron storage, ferroxidase, oxidoreductas	7e-40
1vlg_A	176	Ferritin; TM1128, structural genomics, JCSG, prote	8e-40
1s3q_A	173	Ferritin; ferroxidase, four helix bundle, iron sto	4e-39
2jd6_0	174	Ferritin homolog, ferritin; metal transport, iron,	5e-39
1eum_A	165	Ferritin 1; ECFTNA, metal binding protein; 2.05A {	5e-39
3oj5_A	189	Ferritin family protein; ferroxidase, cytosol, oxi	6e-39
1krq_A	167	Ferritin; H-chain like four-helix bundle, binding	6e-39
3bvf_A	181	Ferritin; iron storage, metal-binding, oxidoreduct	2e-38
3qz3_A	184	Ferritin; structural genomics, the center for stru	3e-38
1z6o_A	212	Ferritin light chain; metal binding protein, iron	2e-32
2y3q_A	158	Bacterioferritin; metal binding protein, redox; HE	2e-08
1jgc_A	161	Bacterioferritin, BFR; iron storage protein, metal	2e-08
3qb9_A	174	Bacterioferritin, BFR; cytosol, structural genomic	3e-08
2fkz_A	155	Bacterioferritin; ferroxidase, DIIRON site, iron T	4e-08
3r2k_A	154	Bacterioferritin, BFR; bacterial ferritin, iron bi	4e-08
3fvb_A	182	Bacterioferritin; niaid, ssgcid, decode, structura	3e-06
3gvy_A	161	Bacterioferritin; iron storage, DI-iron, ferroxida	3e-05
1nfv_A	179	Bacterioferritin; 24 subunits in the active molecu	7e-05

>3a68_A Sferh-4, ferritin-4, chloroplastic; 4-helix bundle, iron storage, CAGE-like protein, plant, iron, metal-binding, oxidoreductase, plastid; 1.80A {Glycine max} PDB: 3a9q_A Length = 212

 Score =  193 bits (493), Expect = 2e-63
 Identities = 110/131 (83%), Positives = 121/131 (92%)

Query: 51  ASKNANNSPLTGVIFAPFEEVKKELDLVPTVPQLSLARHKFTDDCEAAINEQINVEYNVS 110
           A  + N+  LTGVIF PFEEVKKELDLVPTVPQ SLAR K+ D+ E+A+NEQINVEYNVS
Sbjct: 1   AKGSTNHRALTGVIFEPFEEVKKELDLVPTVPQASLARQKYVDESESAVNEQINVEYNVS 60

Query: 111 YVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSE 170
           YVYHAMFAYFDRDNVAL+GLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSI+MPLS+
Sbjct: 61  YVYHAMFAYFDRDNVALRGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSIVMPLSD 120

Query: 171 FDHAEKGDALY 181
           FDHA+KGDAL+
Sbjct: 121 FDHADKGDALH 131

>3vnx_A Ferritin; 4-helix bundle, iron storage, oxidoreductase; 2.40A {Ulva pertusa} Length = 204

 Score =  180 bits (459), Expect = 2e-58
 Identities = 71/124 (57%), Positives = 92/124 (74%), Gaps = 1/124 (0%)

Query: 59  PLTGVIFAPFEEVKKELDLVPTVPQL-SLARHKFTDDCEAAINEQINVEYNVSYVYHAMF 117
            +TG++F PF EV+ EL  V   P   S AR ++  +CEAAINEQIN+EY +SYVYHA+ 
Sbjct: 3   EVTGMVFQPFSEVQGELSTVTQAPVTDSYARVEYHIECEAAINEQINIEYTISYVYHALH 62

Query: 118 AYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEKG 177
           +YF RDNV L G AKFFKE+S+EEREHA  LM+YQ KRGG+V+L+ +  P  EF + +KG
Sbjct: 63  SYFARDNVGLPGFAKFFKEASDEEREHAHMLMDYQTKRGGRVELKPLAAPEMEFANDDKG 122

Query: 178 DALY 181
           +ALY
Sbjct: 123 EALY 126

>2cih_A Ferritin heavy chain; apoferritin, ferroxidase, DI-iron non-heme protein, iron storage, iron, metal-binding, oxidoreductase, phosphorylation; 1.5A {Homo sapiens} PDB: 2chi_A 2cei_A 1fha_A 2fha_A 2cn7_A 2iu2_A 2clu_A 2cn6_A 3ajo_A 3ajq_A 3ajp_A 3erz_A 3es3_A 2z6m_A 1r03_A Length = 183

 Score =  140 bits (356), Expect = 4e-43
 Identities = 49/94 (52%), Positives = 60/94 (63%)

Query: 80  TVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSE 139
           T    S  R  +  D EAAIN QIN++   SYVY +M  YFDRD+VALK  AK+F   S 
Sbjct: 2   TTASTSQVRQNYHQDSEAAINRQINLDLYASYVYLSMSYYFDRDDVALKNFAKYFLHQSH 61

Query: 140 EEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDH 173
           EEREHAEKLM+ QN+RGG++ LQ I  P  +   
Sbjct: 62  EEREHAEKLMKLQNQRGGRIFLQDIQKPDCDDWE 95

>1rcd_A L ferritin; iron storage; 2.00A {Rana catesbeiana} SCOP: a.25.1.1 PDB: 1rcg_A 1rci_A 1rcc_A 1rce_A Length = 173

 Score =  137 bits (347), Expect = 8e-42
 Identities = 49/97 (50%), Positives = 68/97 (70%), Gaps = 4/97 (4%)

Query: 85  SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREH 144
           S  R  F  DCEA +N  +N++++ SYVY +M +YF+RD+VAL   AKFF+E SEEE+EH
Sbjct: 3   SQVRQNFHQDCEAGLNRTVNLKFHSSYVYLSMASYFNRDDVALSNFAKFFRERSEEEKEH 62

Query: 145 AEKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALY 181
           AEKL+EYQN+RGG+V LQS+  P    +  +  + L 
Sbjct: 63  AEKLIEYQNQRGGRVFLQSVEKP----ERDDWANGLE 95

>3ka8_A Ferritin, middle subunit; iron storage, DIIRON, iron, metal-binding, oxidoreductase; 1.35A {Rana catesbeiana} PDB: 3ka9_A 3ka3_A 1mfr_A 3ka4_A 3rbc_A 3re7_A 3rgd_A 3ka6_A 3shx_A 3sh6_A 3se1_A 1bg7_A Length = 176

 Score =  136 bits (345), Expect = 2e-41
 Identities = 49/90 (54%), Positives = 63/90 (70%)

Query: 84  LSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEERE 143
           +S  R  +  DCEAA+N  +N+E   SY Y +M+A+FDRD+VAL  +A+FFKE S EERE
Sbjct: 2   VSQVRQNYHSDCEAAVNRMLNLELYASYTYSSMYAFFDRDDVALHNVAEFFKEHSHEERE 61

Query: 144 HAEKLMEYQNKRGGKVKLQSILMPLSEFDH 173
           HAEK M+YQNKRGG+V LQ I  P  +   
Sbjct: 62  HAEKFMKYQNKRGGRVVLQDIKKPERDEWG 91

>1z6o_M Ferritin heavy chain; metal binding protein, iron storage; 1.91A {Trichoplusia NI} SCOP: a.25.1.1 Length = 191

 Score =  134 bits (340), Expect = 1e-40
 Identities = 30/100 (30%), Positives = 46/100 (46%)

Query: 82  PQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEE 141
            Q+          C  ++ +QI +E   S  Y AM A+F +D V   G A+ F +++ EE
Sbjct: 8   VQIPKDWITMHRSCRNSMRQQIQMEVGASLQYLAMGAHFSKDVVNRPGFAQLFFDAASEE 67

Query: 142 REHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALY 181
           REHA KL+EY   RG      S L+ +     +     + 
Sbjct: 68  REHAMKLIEYLLMRGELTNDVSSLLQVRPPTRSSWKGGVE 107

>2v2p_A Ferritin light chain; metal transport, iron, haemin, apoferritin, iron storage, metal-binding; 1.15A {Equus caballus} PDB: 2v2r_A 2v2m_A 2v2l_A 2v2s_A 2v2o_A 2v2n_A 2za6_A 2v2j_A 2v2i_A 2z5p_A 1dat_A 2g4h_A 1aew_A 3h7g_A 2zg9_X 2zg8_X 3fi6_A 3o7r_A 2w0o_A 1hrs_A* ... Length = 174

 Score =  134 bits (338), Expect = 1e-40
 Identities = 31/89 (34%), Positives = 56/89 (62%)

Query: 85  SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREH 144
           S  R  ++ + EAA+N  +N+    SY Y ++  YFDRD+VAL+G+  FF++ ++++ + 
Sbjct: 2   SQIRQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRQLAQQKMQG 61

Query: 145 AEKLMEYQNKRGGKVKLQSILMPLSEFDH 173
           AE+L++ QN+RGG+   Q +  P  +   
Sbjct: 62  AERLLKMQNQRGGRALFQDLQKPSQDEWG 90

>3kxu_A Ferritin; iron storage protein, disorder, iron, metal binding protein; 1.85A {Homo sapiens} PDB: 3hx2_A 3hx5_A 3hx7_A Length = 191

 Score =  133 bits (336), Expect = 6e-40
 Identities = 37/89 (41%), Positives = 57/89 (64%)

Query: 85  SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREH 144
           S  R  ++ D EAA+N  +N+    SY Y ++  YFDRD+VAL+G++ FF+E +EE+RE 
Sbjct: 3   SQIRQNYSTDVEAAVNSLVNLYLQASYTYLSLGFYFDRDDVALEGVSHFFRELAEEKREG 62

Query: 145 AEKLMEYQNKRGGKVKLQSILMPLSEFDH 173
            E+L++ QN+RGG+   Q I  P  +   
Sbjct: 63  YERLLKMQNQRGGRALFQDIKKPAEDEWG 91

>3e6s_A Ferritin; iron storage, ferroxidase, oxidoreductase; 1.95A {Pseudo-nitzschia multiseries} PDB: 3e6r_A Length = 168

 Score =  132 bits (334), Expect = 7e-40
 Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 2/89 (2%)

Query: 92  TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEY 151
           +++     N Q+  E+  S VY +   +FD+++   +G+A +    S EEREH    +++
Sbjct: 2   SEELLDLFNRQVTQEFTASQVYLSASIWFDQND--WEGMAAYMLAESAEEREHGLGFVDF 59

Query: 152 QNKRGGKVKLQSILMPLSEFDHAEKGDAL 180
            NKR   ++LQ++  P+S  + +   D  
Sbjct: 60  ANKRNIPIELQAVPAPVSCAEWSSPEDVW 88

>1vlg_A Ferritin; TM1128, structural genomics, JCSG, protein structu initiative, PSI, joint center for structural genomics, META protein; 2.00A {Thermotoga maritima} SCOP: a.25.1.1 PDB: 1z4a_A* Length = 176

 Score =  132 bits (334), Expect = 8e-40
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 8/98 (8%)

Query: 85  SLARHKF------TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESS 138
               H        ++    A+N+Q+N E   SY+Y +M  YFD +    KG A + K+ +
Sbjct: 4   DKIHHHHHHMMVISEKVRKALNDQLNREIYSSYLYLSMATYFDAE--GFKGFAHWMKKQA 61

Query: 139 EEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEK 176
           +EE  HA K  EY  +RGG+V+L++I  P S ++  + 
Sbjct: 62  QEELTHAMKFYEYIYERGGRVELEAIEKPPSNWNGIKD 99

>1s3q_A Ferritin; ferroxidase, four helix bundle, iron storage, metal binding; 2.10A {Archaeoglobus fulgidus} SCOP: a.25.1.1 PDB: 1sq3_A 3kx9_A Length = 173

 Score =  130 bits (329), Expect = 4e-39
 Identities = 30/85 (35%), Positives = 52/85 (61%), Gaps = 2/85 (2%)

Query: 91  FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLME 150
            ++    A+N QIN E   +Y+Y +M +YFD  ++ LKG + + +   +EE  HA K+ +
Sbjct: 4   ISEKMVEALNRQINAEIYSAYLYLSMASYFD--SIGLKGFSNWMRVQWQEELMHAMKMFD 61

Query: 151 YQNKRGGKVKLQSILMPLSEFDHAE 175
           + ++RGG+VKL ++  P SE+D   
Sbjct: 62  FVSERGGRVKLYAVEEPPSEWDSPL 86

>2jd6_0 Ferritin homolog, ferritin; metal transport, iron, pores, archaeon, entry channels, thermostability, hyperthermophIle, ferroxidase center; 2.75A {Pyrococcus furiosus} PDB: 2jd7_0 2jd8_0 2x17_0 Length = 174

 Score =  130 bits (329), Expect = 5e-39
 Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 2/84 (2%)

Query: 92  TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEY 151
           ++    A+N+Q+N E   +Y+Y AM AYF+  ++ L+G A + K  +EEE  HA +   Y
Sbjct: 3   SERMLKALNDQLNRELYSAYLYFAMAAYFE--DLGLEGFANWMKAQAEEEIGHALRFYNY 60

Query: 152 QNKRGGKVKLQSILMPLSEFDHAE 175
              R G+V+L  I  P  E++   
Sbjct: 61  IYDRNGRVELDEIPKPPKEWESPL 84

>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli} SCOP: a.25.1.1 Length = 165

 Score =  130 bits (328), Expect = 5e-39
 Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 92  TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEY 151
             +    +NEQ+N+E   S +Y  M A+        +G A F +  ++EE  H ++L +Y
Sbjct: 3   KPEMIEKLNEQMNLELYSSLLYQQMSAWCSYHT--FEGAAAFLRRHAQEEMTHMQRLFDY 60

Query: 152 QNKRGGKVKLQSILMPLSEFDHAEK 176
               G   ++ ++  P +E+   ++
Sbjct: 61  LTDTGNLPRINTVESPFAEYSSLDE 85

>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase; 2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A Length = 189

 Score =  130 bits (329), Expect = 6e-39
 Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 94  DCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQN 153
              A + EQI+ E+  +  Y A+  YFD ++  L  LAK F   + EER HA  L+++  
Sbjct: 10  KFHALMQEQIHNEFTAAQQYVAIAVYFDSED--LPQLAKHFYSQAVEERNHAMMLVQHLL 67

Query: 154 KRGGKVKLQSILMPLSEFDHAEK 176
            R  +V++  +    ++FD   +
Sbjct: 68  DRDLRVEIPGVDTVRNQFDRPRE 90

>1krq_A Ferritin; H-chain like four-helix bundle, binding protein; 2.70A {Campylobacter jejuni} SCOP: a.25.1.1 Length = 167

 Score =  129 bits (327), Expect = 6e-39
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 91  FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLME 150
            + +    +NEQIN E   + +Y +M ++   ++  L G   F    + EE +HA+KL+ 
Sbjct: 2   LSKEVVKLLNEQINKEMYAANLYLSMSSWCYENS--LDGAGAFLFAHASEESDHAKKLIT 59

Query: 151 YQNKRGGKVKLQSILMPLSEFDHAE 175
           Y N+    V+LQ +  P   F    
Sbjct: 60  YLNETDSHVELQEVKQPEQNFKSLL 84

>3qz3_A Ferritin; structural genomics, the center for structural genomics of I diseases, csgid, cytoplasmic, oxidoreductase; 2.10A {Vibrio cholerae o1 biovar el tor} Length = 184

 Score =  128 bits (325), Expect = 3e-38
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 89  HKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKL 148
              +      +NEQIN+E+  S +Y  M A+ +  +    G A+F +  + EE +H ++L
Sbjct: 9   FMLSQAMVEHLNEQINLEFFSSNLYLQMSAWCE--DKGFDGAAEFLRAHAVEEMQHMQRL 66

Query: 149 MEYQNKRGGKVKLQSILMPLSEFDHAE 175
             Y ++ G    L +I  P  +F    
Sbjct: 67  FTYVSETGALPILGAIAAPRHDFASLG 93

>1z6o_A Ferritin light chain; metal binding protein, iron storage; 1.91A {Trichoplusia NI} SCOP: a.25.1.1 Length = 212

 Score =  114 bits (287), Expect = 2e-32
 Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 3/106 (2%)

Query: 79  PTVPQLSL--ARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKE 136
             +P+ +     +    +    +     +    SY Y    AYF+       G +K FK+
Sbjct: 19  LALPRCNAVYGEYGSHGNVATELQAYAKLHLERSYDYLLSAAYFNNYQTNRAGFSKLFKK 78

Query: 137 SSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEF-DHAEKGDALY 181
            S+E       ++++  KRG K+         +E  ++  +   L 
Sbjct: 79  LSDEAWSKTIDIIKHVTKRGDKMNFDQHSTMKTERKNYTAENHELE 124

>2y3q_A Bacterioferritin; metal binding protein, redox; HET: HEM; 1.55A {Escherichia coli} PDB: 1bfr_A* 1bcf_A* 2htn_A* 2vxi_A* 3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A* 3e2c_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A* Length = 158

 Score = 50.4 bits (120), Expect = 2e-08
 Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 2/79 (2%)

Query: 97  AAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRG 156
             +N+ +  E      Y      F   N  LK L       S +E +HA++ +E      
Sbjct: 9   NYLNKLLGNELVAINQYFLHARMFK--NWGLKRLNDVEYHESIDEMKHADRYIERILFLE 66

Query: 157 GKVKLQSILMPLSEFDHAE 175
           G   LQ +       D  E
Sbjct: 67  GLPNLQDLGKLNIGEDVEE 85

>1jgc_A Bacterioferritin, BFR; iron storage protein, metal binding protein; HET: HEM; 2.60A {Rhodobacter capsulatus} SCOP: a.25.1.1 Length = 161

 Score = 50.0 bits (119), Expect = 2e-08
 Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 2/76 (2%)

Query: 100 NEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKV 159
           N  +  E      Y   F   +  +  L  +AK  +E S EE  HA+K++       G  
Sbjct: 12  NAALRSELTAISQYWVHFRLQE--DWGLAKMAKKSREESIEEMGHADKIIARILFLEGHP 69

Query: 160 KLQSILMPLSEFDHAE 175
            LQ +          E
Sbjct: 70  NLQKLDPLRIGEGPRE 85

>3qb9_A Bacterioferritin, BFR; cytosol, structural genomics, TB structural genomics consort TBSGC, metal binding protein; HET: HEM; 2.11A {Mycobacterium tuberculosis} PDB: 2wtl_A* 3bkn_A* Length = 174

 Score = 50.0 bits (119), Expect = 3e-08
 Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 2/68 (2%)

Query: 97  AAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRG 156
             +NEQ+  E      Y       D  N     LA   +  S +E  HAE++ +      
Sbjct: 11  RLLNEQLTSELTAINQYFLHSKMQD--NWGFTELAAHTRAESFDEMRHAEEITDRILLLD 68

Query: 157 GKVKLQSI 164
           G    Q I
Sbjct: 69  GLPNYQRI 76

>2fkz_A Bacterioferritin; ferroxidase, DIIRON site, iron T metal binding protein; HET: HEM; 2.00A {Azotobacter vinelandii} SCOP: a.25.1.1 PDB: 2fl0_A* 1sof_A* Length = 155

 Score = 49.2 bits (117), Expect = 4e-08
 Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 2/71 (2%)

Query: 97  AAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRG 156
             +N+ +  E      Y      ++  +  L+ L K     S +E +HA+KL++      
Sbjct: 9   QHLNKILGNELIAINQYFLHARMYE--DWGLEKLGKHEYHESIDEMKHADKLIKRILFLE 66

Query: 157 GKVKLQSILMP 167
           G   LQ +   
Sbjct: 67  GLPNLQELGKL 77

>3r2k_A Bacterioferritin, BFR; bacterial ferritin, iron binding, iron storage, iron homeost iron release, iron mobilization; 1.55A {Pseudomonas aeruginosa} PDB: 3r2h_A 3r2l_A 3r2m_A 3r2o_A 3r2r_A 3r2s_A Length = 154

 Score = 49.2 bits (117), Expect = 4e-08
 Identities = 11/74 (14%), Positives = 24/74 (32%), Gaps = 2/74 (2%)

Query: 97  AAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRG 156
             +N  +  E      Y      ++  +     L +      EEE +HA+ L+       
Sbjct: 9   DYLNTLLTGELAARDQYFIHSRMYE--DWGFSKLYERLNHEMEEETQHADALLRRILLLE 66

Query: 157 GKVKLQSILMPLSE 170
           G  +++   +    
Sbjct: 67  GTPRMRPDDIHPGT 80

>3fvb_A Bacterioferritin; niaid, ssgcid, decode, structural genomics, seattle structural genomics center for infectious disease; HET: HEM; 1.81A {Brucella melitensis biovar ABORTUS2308} Length = 182

 Score = 44.7 bits (105), Expect = 3e-06
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 100 NEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKV 159
           NE + +E      Y   +   +  +     LAK  +E S EE  HA+KL++      G  
Sbjct: 33  NEALFLELGAVNQYWLHYRLLN--DWGYTRLAKKEREESIEEMHHADKLIDRIIFLEGFP 90

Query: 160 KLQSILMP 167
            LQ++   
Sbjct: 91  NLQTVSPL 98

>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxida activity, heme, metal binding protein; HET: HEM; 2.80A {Rhodobacter sphaeroides} Length = 161

 Score = 41.4 bits (97), Expect = 3e-05
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 100 NEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKV 159
           N  +  E      Y   +   +  +     +A   ++ S EE  HA+KL++     GG  
Sbjct: 12  NAALRSELTAVSQYWLHYRLQE--DWGFGSIAHKSRKESIEEMHHADKLIQRIIFLGGHP 69

Query: 160 KLQ 162
            LQ
Sbjct: 70  NLQ 72

>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM Fe-coproporphyrin III cofactor, iron storage-electron complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans} SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A* Length = 179

 Score = 40.4 bits (94), Expect = 7e-05
 Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 6/53 (11%)

Query: 111 YVYHA-MFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQ 162
           Y+           D++    LA   K  + +E  HAE   E   + GG+   Q
Sbjct: 30  YMNQHYSL-----DDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQ 77

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	183
3vnx_A	204	Ferritin; 4-helix bundle, iron storage, oxidoreduc	100.0
3a68_A	212	Sferh-4, ferritin-4, chloroplastic; 4-helix bundle	100.0
3ka8_A	176	Ferritin, middle subunit; iron storage, DIIRON, ir	99.97
3kxu_A	191	Ferritin; iron storage protein, disorder, iron, me	99.97
2cih_A	183	Ferritin heavy chain; apoferritin, ferroxidase, DI	99.96
1rcd_A	173	L ferritin; iron storage; 2.00A {Rana catesbeiana}	99.96
2v2p_A	174	Ferritin light chain; metal transport, iron, haemi	99.96
1z6o_M	191	Ferritin heavy chain; metal binding protein, iron	99.96
1z6o_A	212	Ferritin light chain; metal binding protein, iron	99.95
3e6s_A	168	Ferritin; iron storage, ferroxidase, oxidoreductas	99.93
1s3q_A	173	Ferritin; ferroxidase, four helix bundle, iron sto	99.92
3qz3_A	184	Ferritin; structural genomics, the center for stru	99.92
3uno_A	189	Probable bacterioferritin BFRB; ferroxidase activi	99.91
1eum_A	165	Ferritin 1; ECFTNA, metal binding protein; 2.05A {	99.91
1krq_A	167	Ferritin; H-chain like four-helix bundle, binding	99.9
3bvf_A	181	Ferritin; iron storage, metal-binding, oxidoreduct	99.87
1vlg_A	176	Ferritin; TM1128, structural genomics, JCSG, prote	99.84
4am5_A	159	Bacterioferritin; metal binding protein, ferroxida	99.81
2jd6_0	174	Ferritin homolog, ferritin; metal transport, iron,	99.8
3oj5_A	189	Ferritin family protein; ferroxidase, cytosol, oxi	99.75
3uoi_A	161	Bacterioferritin, BFR; structural genomics, TB str	99.63
3r2k_A	154	Bacterioferritin, BFR; bacterial ferritin, iron bi	99.62
1lko_A	191	Rubrerythrin all-iron(II) form; reduced form, DIIR	99.62
2y3q_A	158	Bacterioferritin; metal binding protein, redox; HE	99.59
3qb9_A	174	Bacterioferritin, BFR; cytosol, structural genomic	99.58
3fvb_A	182	Bacterioferritin; niaid, ssgcid, decode, structura	99.57
3gvy_A	161	Bacterioferritin; iron storage, DI-iron, ferroxida	99.57
1nfv_A	179	Bacterioferritin; 24 subunits in the active molecu	99.56
2vzb_A	170	Putative bacterioferritin-related protein; DPS, DP	99.53
1jgc_A	161	Bacterioferritin, BFR; iron storage protein, metal	99.53
2fkz_A	155	Bacterioferritin; ferroxidase, DIIRON site, iron T	99.52
1j30_A	144	144AA long hypothetical rubrerythrin; sulerythrin,	99.5
2c41_A	158	DPS family DNA-binding stress response protein; ir	99.44
2qqy_A	149	Sigma B operon; dodecameric alpha-helical, ferriti	99.43
1ji5_A	142	DLP-1; dodecamer, four-helix bundle, metal transpo	99.42
2vxx_A	192	Starvation induced DNA binding protein; stress res	99.36
1n1q_A	149	DPS protein; four-helix bundle, unknown function;	99.34
1jig_A	146	DLP-2; dodecamer, four-helix bundle, metal transpo	99.31
2d5k_A	156	DPS, DPS family protein; four helix bundle, metal	99.28
2clb_A	188	DPS-like protein; DI-iron carboxylate, hypothetica	99.24
1yuz_A	202	Nigerythrin; rubrythrin, rubredoxin, hemerythrin,	99.14
1tjo_A	182	Iron-rich DPSA-homolog protein; ferritin, low-iron	98.87
3pwf_A	170	Rubrerythrin; non heme iron peroxidases, oxidative	98.58
4di0_A	144	Rubrerythrin; ssgcid, seattle structural genomics	98.53
1o9r_A	162	Agrobacterium tumefaciens DPS; iron-binding protei	98.02
2fjc_A	156	Antigen TPF1; mini ferritin, iron binding protein,	98.01
3ak8_A	167	DNA protection during starvation protein; DPS-like	97.95
2chp_A	153	MRGA, metalloregulation DNA-binding stress protein	97.93
2bk6_A	156	Non-heme iron-containing ferritin; DPS (DNA bindin	97.92
2yjk_A	161	AFP, DPS; metal-binding protein, iron uptake, ferr	97.9
2z90_A	161	Starvation-inducible DNA-binding protein or FINE t	97.88
2c2u_A	207	DPS, DNA-binding stress response protein; DNA-bind	97.8
2yw6_A	183	DNA protection during starvation protein; DNA-bind	97.8
2c2j_A	211	DNA-binding stress response protein; DNA-binding p	97.76
2pyb_A	151	NAPA, neutrophil activating protein; ferritin, DPS	97.72
2cf7_A	165	DPR; peroxide resistance, DPS-family, ferritin-lik	97.68
2wlu_A	175	DPS-like peroxide resistance protein; DNA-binding,	97.64
2xgw_A	199	Peroxide resistance protein; metal binding protein	97.61
2oh3_A	167	Rubrerythrin, COG1633: uncharacterized conserved p	97.35
3kwo_A	152	Putative bacterioferritin; alpha-helix, bacterial	97.34
3iq1_A	159	DPS family protein; csgid, SAD, niaid, metal trans	97.33
4eve_A	164	Neutrophil-activating protein; dodecamer, four-hel	97.2
2fzf_A	175	Hypothetical protein; structural genomics, southea	97.09
4etr_A	153	Putative uncharacterized protein; DUF2383, domain	96.83
3qhb_A	179	Symerythrin, ORF180; four-helix bundle, carboxylat	96.54
1vjx_A	157	Putative ferritin-like DIIRON-carboxylate protein;	95.22
1zpy_A	95	Hypothetical protein NE0167; structural genomics,	95.22
3k6c_A	95	Uncharacterized protein NE0167; structural genomic	95.13
4a25_A	169	DPS, ferritin DPS family protein; metal binding pr	93.25
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	92.95
4di0_A	144	Rubrerythrin; ssgcid, seattle structural genomics	92.57
1vjx_A	157	Putative ferritin-like DIIRON-carboxylate protein;	92.32
1j30_A	144	144AA long hypothetical rubrerythrin; sulerythrin,	92.01
2fzf_A	175	Hypothetical protein; structural genomics, southea	90.84
2qqy_A	149	Sigma B operon; dodecameric alpha-helical, ferriti	90.51
2e0z_A	345	Virus-like particle; bacteriophage, HK97; 3.60A {P	88.19
3qhb_A	179	Symerythrin, ORF180; four-helix bundle, carboxylat	88.05
3hl1_A	317	Ferritin like protein; structural genomics, joint	87.57
3uoi_A	161	Bacterioferritin, BFR; structural genomics, TB str	86.66
4am5_A	159	Bacterioferritin; metal binding protein, ferroxida	85.85
3r2k_A	154	Bacterioferritin, BFR; bacterial ferritin, iron bi	85.32
2y3q_A	158	Bacterioferritin; metal binding protein, redox; HE	85.21
1nfv_A	179	Bacterioferritin; 24 subunits in the active molecu	84.91
2oh3_A	167	Rubrerythrin, COG1633: uncharacterized conserved p	84.77
3qb9_A	174	Bacterioferritin, BFR; cytosol, structural genomic	84.66
2itb_A	206	TRNA-(MS(2)IO(6)A)-hydroxylase, putative; putative	84.25
1o9i_A	266	Pseudocatalase; oxidoreductase, hexamer, dimangane	83.13
1jgc_A	161	Bacterioferritin, BFR; iron storage protein, metal	82.73
3gvy_A	161	Bacterioferritin; iron storage, DI-iron, ferroxida	82.23
2fkz_A	155	Bacterioferritin; ferroxidase, DIIRON site, iron T	80.43
1yuz_A	202	Nigerythrin; rubrythrin, rubredoxin, hemerythrin,	80.31

>3vnx_A Ferritin; 4-helix bundle, iron storage, oxidoreductase; 2.40A {Ulva pertusa}

Probab=100.00  E-value=5.8e-43  Score=290.68  Aligned_cols=123  Identities=57%  Similarity=0.964  Sum_probs=113.8

Q ss_pred             CccccccccchHHHHhhhhcCCCCC-cccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHH
Q 030066           58 SPLTGVIFAPFEEVKKELDLVPTVP-QLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKE  136 (183)
Q Consensus        58 ~~~~g~~~~p~~ev~~~~~~v~~~~-~~S~~Rq~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~  136 (183)
                      +++|||||+||+|||+++.+||++| ..|++||||+++|+++||+|||.||+|+|+|++||+||++++++|+|||+||++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rq~~~~~v~~~LN~qin~EL~As~~Ylsma~~f~~~d~~l~g~a~~f~~   81 (204)
T 3vnx_A            2 QEVTGMVFQPFSEVQGELSTVTQAPVTDSYARVEYHIECEAAINEQINIEYTISYVYHALHSYFARDNVGLPGFAKFFKE   81 (204)
T ss_dssp             ------CCCHHHHTHHHHHHHHHCCTTSCSSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCCHHHHHHHHH
T ss_pred             CCCCcceeccHHHHHHHHhcCCCCCCccccceecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHH
Confidence            4799999999999999999999999 689999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCCcccCCccccccC
Q 030066          137 SSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDAL  180 (183)
Q Consensus       137 qSeEEreHAekLikY~n~RGG~V~l~~I~~P~~ef~~~ekgd~l  180 (183)
                      +|+|||+||++||+||++|||+|.+++|.+|..+|++.+.||.+
T Consensus        82 ~s~EE~~HA~kLi~yi~~rGG~~~l~~i~~p~~~~~~~~~~~~~  125 (204)
T 3vnx_A           82 ASDEEREHAHMLMDYQTKRGGRVELKPLAAPEMEFANDDKGEAL  125 (204)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCCCCCCCTTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCccccccccccHH
Confidence            99999999999999999999999999999999999998887754

>3a68_A Sferh-4, ferritin-4, chloroplastic; 4-helix bundle, iron storage, CAGE-like protein, plant, iron, metal-binding, oxidoreductase, plastid; 1.80A {Glycine max} PDB: 3a9q_A

Probab=100.00  E-value=3.5e-40  Score=275.18  Aligned_cols=126  Identities=87%  Similarity=1.289  Sum_probs=114.1

Q ss_pred             CCCCccccccccchHHHHhhhhcCCCCCcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHH
Q 030066           55 ANNSPLTGVIFAPFEEVKKELDLVPTVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFF  134 (183)
Q Consensus        55 ~~~~~~~g~~~~p~~ev~~~~~~v~~~~~~S~~Rq~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF  134 (183)
                      ++++++|||||+||+||++++..+|..++.|++|||++++|+++||+|||.||+|+|+|++||+||++++++|+||++||
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rq~~~~~v~~~LN~qin~El~As~~Yl~ma~~f~~~~v~l~g~a~~f   84 (212)
T 3a68_A            5 TNHRALTGVIFEPFEEVKKELDLVPTVPQASLARQKYVDESESAVNEQINVEYNVSYVYHAMFAYFDRDNVALRGLAKFF   84 (212)
T ss_dssp             ---------CCCHHHHHTTTTTTSCCSTTSCSSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCHHHHHHH
T ss_pred             CCCCCcCceeeecHHHHHHHHhcCcCCCccCcccCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcccchHHHHHHH
Confidence            45679999999999999999999999999999999999999999999999999999999999999999989999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCCcccCCccccccC
Q 030066          135 KESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDAL  180 (183)
Q Consensus       135 ~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~~ef~~~ekgd~l  180 (183)
                      +++|+|||+||++|++||++|||+|.+++|++|..+|++++.||.+
T Consensus        85 ~~~s~EE~~HA~kl~~yi~~rGG~~~l~~i~~p~~~~~~~e~~~~~  130 (212)
T 3a68_A           85 KESSEEEREHAEKLMEYQNKRGGKVKLQSIVMPLSDFDHADKGDAL  130 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCCCCCCBCCCCCCCCCTTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCccCCcCCCCCCcCCcccCCHH
Confidence            9999999999999999999999999999999999999999888764

>3ka8_A Ferritin, middle subunit; iron storage, DIIRON, iron, metal-binding, oxidoreductase; 1.35A {Rana catesbeiana} SCOP: a.25.1.1 PDB: 3ka9_A 3ka3_A 1mfr_A 3ka4_A 3rbc_A 3re7_A 3rgd_A 4das_A* 3ka6_A 3shx_A 3sh6_A 3se1_A 1bg7_A

Probab=99.97  E-value=2.5e-31  Score=215.13  Aligned_cols=93  Identities=54%  Similarity=0.900  Sum_probs=88.9

Q ss_pred             cccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeC
Q 030066           83 QLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQ  162 (183)
Q Consensus        83 ~~S~~Rq~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~  162 (183)
                      |.|++||||+++|+++||+|||.||+|+|+|++||+||+++++||+|||+||+++|+|||+||++|++||++|||+|.++
T Consensus         1 ~~~~~rqn~~~~v~~~LN~qin~El~As~~Yl~ma~~f~~~d~~l~g~a~~f~~~s~EE~~HA~kl~~~i~~rgg~~~l~   80 (176)
T 3ka8_A            1 MVSQVRQNYHSDCEAAVNRMLNLELYASYTYSSMYAFFDRDDVALHNVAEFFKEHSHEEREHAEKFMKYQNKRGGRVVLQ   80 (176)
T ss_dssp             -CCTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred             CCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeC
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCC-CcccCCcc
Q 030066          163 SILMP-LSEFDHAE  175 (183)
Q Consensus       163 ~I~~P-~~ef~~~e  175 (183)
                      +|++| ..+|+++.
T Consensus        81 ~i~~p~~~~~~~~~   94 (176)
T 3ka8_A           81 DIKKPERDEWGNTL   94 (176)
T ss_dssp             CCCCCSCSCCCSHH
T ss_pred             cccCCCccccCCHH
Confidence            99999 66898764

>3kxu_A Ferritin; iron storage protein, disorder, iron, metal binding protein; 1.85A {Homo sapiens} PDB: 3hx2_A 3hx5_A 3hx7_A

Probab=99.97  E-value=2.6e-31  Score=218.68  Aligned_cols=93  Identities=41%  Similarity=0.693  Sum_probs=89.2

Q ss_pred             cccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeC
Q 030066           83 QLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQ  162 (183)
Q Consensus        83 ~~S~~Rq~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~  162 (183)
                      |.|++||||+++|+++||+|||.||+|+|+|++||+||++++|||+|||+||+++|+|||+||++||+||++|||+|.++
T Consensus         1 ~~s~~rqn~~~~v~~~LN~qin~EL~As~~Ylsma~~f~~~d~~l~g~a~~f~~~s~EE~~HA~kl~~yi~~rgG~~~l~   80 (191)
T 3kxu_A            1 MSSQIRQNYSTDVEAAVNSLVNLYLQASYTYLSLGFYFDRDDVALEGVSHFFRELAEEKREGYERLLKMQNQRGGRALFQ   80 (191)
T ss_dssp             -CCTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred             CCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCc-ccCCcc
Q 030066          163 SILMPLS-EFDHAE  175 (183)
Q Consensus       163 ~I~~P~~-ef~~~e  175 (183)
                      +|.+|.. +|+++.
T Consensus        81 ~i~~p~~~~~~s~~   94 (191)
T 3kxu_A           81 DIKKPAEDEWGKTP   94 (191)
T ss_dssp             CCCCCSCSCCCSHH
T ss_pred             CcCCCCccccCCHH
Confidence            9999995 998864

>2cih_A Ferritin heavy chain; apoferritin, ferroxidase, DI-iron non-heme protein, iron storage, iron, metal-binding, oxidoreductase, phosphorylation; 1.5A {Homo sapiens} PDB: 2chi_A 2cei_A 1fha_A 2fha_A 2cn7_A 2iu2_A 2clu_A 2cn6_A 3ajo_A 3ajq_A 3ajp_A 3erz_A 3es3_A 2z6m_A 1r03_A

Probab=99.96  E-value=6.1e-30  Score=208.09  Aligned_cols=96  Identities=51%  Similarity=0.770  Sum_probs=88.6

Q ss_pred             CCCcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCee
Q 030066           80 TVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKV  159 (183)
Q Consensus        80 ~~~~~S~~Rq~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V  159 (183)
                      +.++.|++|||++++|+++||+|||.||+|+|+|++||+||++++++|+||++||+++|+|||+||++|++||++|||+|
T Consensus         2 ~~~~~s~~rq~~~~~~~~~LN~qi~~El~As~~Yl~~a~~~~~~d~~l~g~a~~f~~~s~EE~~HA~kl~~~i~~rgg~~   81 (183)
T 2cih_A            2 TTASTSQVRQNYHQDSEAAINRQINLDLYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRI   81 (183)
T ss_dssp             ----CCTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             CCCccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc
Confidence            34567999999999999999999999999999999999999998899999999999999999999999999999999999


Q ss_pred             eeCCcCCCCc-ccCCcc
Q 030066          160 KLQSILMPLS-EFDHAE  175 (183)
Q Consensus       160 ~l~~I~~P~~-ef~~~e  175 (183)
                      .+++|++|.. +|.++.
T Consensus        82 ~l~~i~~p~~~~~~~~~   98 (183)
T 2cih_A           82 FLQDIQKPDCDDWESGL   98 (183)
T ss_dssp             CCCCCCCCSCSCCCSHH
T ss_pred             ccCCCCCCCccccCCHH
Confidence            9999999976 598754

>1rcd_A L ferritin; iron storage; 2.00A {Rana catesbeiana} SCOP: a.25.1.1 PDB: 1rcg_A 1rci_A 1rcc_A 1rce_A

Probab=99.96  E-value=8.5e-30  Score=204.90  Aligned_cols=93  Identities=52%  Similarity=0.881  Sum_probs=88.1

Q ss_pred             cccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeC
Q 030066           83 QLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQ  162 (183)
Q Consensus        83 ~~S~~Rq~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~  162 (183)
                      |.|++||||+++|+++||+|||.||+|+|+|++||+||++++++|+|||+||+++|+|||+||++|++||++|||+|.++
T Consensus         1 ~~~~~rqn~~~~v~~~LN~qi~~El~as~~Yl~~a~~~~~~~~~l~g~a~~f~~~s~EE~~HA~~l~~~i~~rgg~~~l~   80 (173)
T 1rcd_A            1 MESQVRQNFHQDCEAGLNRTVNLKFHSSYVYLSMASYFNRDDVALSNFAKFFRERSEEEKEHAEKLIEYQNQRGGRVFLQ   80 (173)
T ss_dssp             --CTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred             CCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeecC
Confidence            35899999999999999999999999999999999999998899999999999999999999999999999999999999


Q ss_pred             CcCCC-CcccCCcc
Q 030066          163 SILMP-LSEFDHAE  175 (183)
Q Consensus       163 ~I~~P-~~ef~~~e  175 (183)
                      +|++| ..+|.++.
T Consensus        81 ~i~~p~~~~~~~~~   94 (173)
T 1rcd_A           81 SVEKPERDDWANGL   94 (173)
T ss_dssp             CCCCCSCSCCCSHH
T ss_pred             CCCCCCccccCCHH
Confidence            99999 77997754

>2v2p_A Ferritin light chain; metal transport, iron, haemin, apoferritin, iron storage, metal-binding; 1.15A {Equus caballus} PDB: 2v2r_A 2v2m_A 2v2l_A 2v2s_A 2v2o_A 2v2n_A 2za6_A 2v2j_A 2v2i_A 2z5p_A 1dat_A 2g4h_A 1aew_A 3h7g_A 2zg9_X 2zg8_X 3fi6_A 3o7r_A 2w0o_A 1hrs_A* ...

Probab=99.96  E-value=1.2e-29  Score=204.21  Aligned_cols=91  Identities=35%  Similarity=0.669  Sum_probs=88.2

Q ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCc
Q 030066           85 SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSI  164 (183)
Q Consensus        85 S~~Rq~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I  164 (183)
                      |++||||+++|+++||+|||.||+|+|+|++||+||++++++|+|||+||+++|+|||+||++|++||++|||+|.+++|
T Consensus         2 ~~~~qn~~~~v~~~LN~qi~~El~as~~Yl~~a~~~~~~~~~l~g~a~~f~~~s~EE~~HA~~l~~~i~~rgg~~~l~~i   81 (174)
T 2v2p_A            2 SQIRQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRQLAQQKMQGAERLLKMQNQRGGRALFQDL   81 (174)
T ss_dssp             CCSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCC
T ss_pred             CcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCC
Confidence            78999999999999999999999999999999999999989999999999999999999999999999999999999999


Q ss_pred             CCC-CcccCCcc
Q 030066          165 LMP-LSEFDHAE  175 (183)
Q Consensus       165 ~~P-~~ef~~~e  175 (183)
                      ++| ..+|.++.
T Consensus        82 ~~p~~~~~~~~~   93 (174)
T 2v2p_A           82 QKPSQDEWGTTP   93 (174)
T ss_dssp             CCCSCSCCCSHH
T ss_pred             CCCCccccCCHH
Confidence            999 88998754

>1z6o_M Ferritin heavy chain; metal binding protein, iron storage; 1.91A {Trichoplusia NI} SCOP: a.25.1.1

Probab=99.96  E-value=2.3e-29  Score=206.08  Aligned_cols=93  Identities=33%  Similarity=0.473  Sum_probs=88.8

Q ss_pred             cccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCee---
Q 030066           83 QLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKV---  159 (183)
Q Consensus        83 ~~S~~Rq~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V---  159 (183)
                      +.|++||+++++|+++||+|||.||+|+|+|++||+||++++++|+|||+||+++|+|||+||++|++||++|||+|   
T Consensus         9 ~~~~~~~~~~~~~~~~LN~qin~El~As~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~EE~~HA~kli~yi~~rGg~~~~~   88 (191)
T 1z6o_M            9 QIPKDWITMHRSCRNSMRQQIQMEVGASLQYLAMGAHFSKDVVNRPGFAQLFFDAASEEREHAMKLIEYLLMRGELTNDV   88 (191)
T ss_dssp             CCCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCC
T ss_pred             cCcHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchh
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999   


Q ss_pred             -eeCCcCCCC-cccCCcc
Q 030066          160 -KLQSILMPL-SEFDHAE  175 (183)
Q Consensus       160 -~l~~I~~P~-~ef~~~e  175 (183)
                       .+++|++|. .+|.++.
T Consensus        89 ~~l~~i~~p~~~~~~~~~  106 (191)
T 1z6o_M           89 SSLLQVRPPTRSSWKGGV  106 (191)
T ss_dssp             GGGCCCCCCSCCCCSSHH
T ss_pred             hhhhcCCCCCccccCCHH
Confidence             999999997 6897654

>1z6o_A Ferritin light chain; metal binding protein, iron storage; 1.91A {Trichoplusia NI} SCOP: a.25.1.1

Probab=99.95  E-value=5.4e-28  Score=201.50  Aligned_cols=97  Identities=18%  Similarity=0.250  Sum_probs=89.6

Q ss_pred             ccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCC
Q 030066           84 LSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQS  163 (183)
Q Consensus        84 ~S~~Rq~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~  163 (183)
                      ....+.+.+++|+++||+|||.||+|+|+|++||+||++++++|+|||+||+++|+|||+||++||+||++|||+|.+++
T Consensus        26 ~~~~~~~~~~~v~~~LN~qin~El~As~~Yl~ma~~f~~dd~~l~gfa~~f~~~s~EE~~HA~kli~yi~~rGg~~~l~~  105 (212)
T 1z6o_A           26 AVYGEYGSHGNVATELQAYAKLHLERSYDYLLSAAYFNNYQTNRAGFSKLFKKLSDEAWSKTIDIIKHVTKRGDKMNFDQ  105 (212)
T ss_dssp             SCCTTTTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTC
T ss_pred             ccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccccc
Confidence            34556788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCC-cccCCccccccC
Q 030066          164 ILMPL-SEFDHAEKGDAL  180 (183)
Q Consensus       164 I~~P~-~ef~~~ekgd~l  180 (183)
                      |.+|. .+|++..++|.+
T Consensus       106 i~~p~~~~~~~~~~~~~~  123 (212)
T 1z6o_A          106 HSTMKTERKNYTAENHEL  123 (212)
T ss_dssp             CCCSCCCCCCCCSCCCHH
T ss_pred             cccccccccCccccCCHH
Confidence            99996 799886666554

>3e6s_A Ferritin; iron storage, ferroxidase, oxidoreductase; 1.95A {Pseudo-nitzschia multiseries} SCOP: a.25.1.1 PDB: 3e6r_A

Probab=99.93  E-value=4.9e-26  Score=183.03  Aligned_cols=82  Identities=29%  Similarity=0.552  Sum_probs=78.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCC--c
Q 030066           92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPL--S  169 (183)
Q Consensus        92 s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~--~  169 (183)
                      +++|+++||+|||.||+|+|+|++||+||+++  +|+|||+||+++|+|||+||++|++||++|||+|.+++|++|.  .
T Consensus         2 ~~~v~~~LN~qin~El~As~~Yl~ma~~f~~~--~l~g~a~~f~~~s~EE~~HA~kl~~~i~~rgg~~~l~~i~~p~~~~   79 (168)
T 3e6s_A            2 SEELLDLFNRQVTQEFTASQVYLSASIWFDQN--DWEGMAAYMLAESAEEREHGLGFVDFANKRNIPIELQAVPAPVSCA   79 (168)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCCGGG
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCcCCCCccc
Confidence            67999999999999999999999999999976  6999999999999999999999999999999999999999998  7


Q ss_pred             ccCCcc
Q 030066          170 EFDHAE  175 (183)
Q Consensus       170 ef~~~e  175 (183)
                      +|+++.
T Consensus        80 ~~~~~~   85 (168)
T 3e6s_A           80 EWSSPE   85 (168)
T ss_dssp             TCCSHH
T ss_pred             cCCCHH
Confidence            998765

>1s3q_A Ferritin; ferroxidase, four helix bundle, iron storage, metal binding; 2.10A {Archaeoglobus fulgidus} SCOP: a.25.1.1 PDB: 1sq3_A 3kx9_A

Probab=99.92  E-value=2.3e-25  Score=179.20  Aligned_cols=84  Identities=36%  Similarity=0.637  Sum_probs=80.5

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCCc
Q 030066           90 KFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLS  169 (183)
Q Consensus        90 ~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~~  169 (183)
                      +++++|+++||+|||.|++++|+|++||+||++  ++|+|||+||+++|+|||+||++|++||++|||+|.+++|++|..
T Consensus         3 m~~~~v~~~LN~qi~~El~as~~Yl~~a~~~~~--~~l~g~a~~f~~~a~EE~~HA~~l~~~i~~~gg~~~l~~i~~p~~   80 (173)
T 1s3q_A            3 SISEKMVEALNRQINAEIYSAYLYLSMASYFDS--IGLKGFSNWMRVQWQEELMHAMKMFDFVSERGGRVKLYAVEEPPS   80 (173)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCCC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCC
Confidence            588999999999999999999999999999994  799999999999999999999999999999999999999999999


Q ss_pred             ccCCcc
Q 030066          170 EFDHAE  175 (183)
Q Consensus       170 ef~~~e  175 (183)
                      +|.++.
T Consensus        81 ~~~~~~   86 (173)
T 1s3q_A           81 EWDSPL   86 (173)
T ss_dssp             CCSSHH
T ss_pred             CCCCHH
Confidence            998753

>3qz3_A Ferritin; structural genomics, the center for structural genomics of I diseases, csgid, cytoplasmic, oxidoreductase; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: a.25.1.1

Probab=99.92  E-value=4.8e-25  Score=179.50  Aligned_cols=86  Identities=27%  Similarity=0.445  Sum_probs=81.7

Q ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCC
Q 030066           88 RHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMP  167 (183)
Q Consensus        88 Rq~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P  167 (183)
                      -.+++++|+++||+|||.||+++|+|++|++||+  +++|+||++||+++|+|||+||++|++||++|||+|.+++|++|
T Consensus         8 ~~m~~~~v~~~LN~qin~EL~as~~Yl~~a~~f~--~~~l~g~a~~f~~~a~EE~~HA~~l~~~i~~~Gg~~~l~~i~~p   85 (184)
T 3qz3_A            8 FFMLSQAMVEHLNEQINLEFFSSNLYLQMSAWCE--DKGFDGAAEFLRAHAVEEMQHMQRLFTYVSETGALPILGAIAAP   85 (184)
T ss_dssp             -CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCC
T ss_pred             eeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcccCCCCCc
Confidence            3579999999999999999999999999999999  68999999999999999999999999999999999999999999


Q ss_pred             CcccCCcc
Q 030066          168 LSEFDHAE  175 (183)
Q Consensus       168 ~~ef~~~e  175 (183)
                      ..+|+++.
T Consensus        86 ~~~~~~~~   93 (184)
T 3qz3_A           86 RHDFASLG   93 (184)
T ss_dssp             CCCCSCHH
T ss_pred             ccCcCCHH
Confidence            98998764

>3uno_A Probable bacterioferritin BFRB; ferroxidase activity, iron storage, oxidoreductase; 2.50A {Mycobacterium tuberculosis} PDB: 3oj5_A 3qd8_A

Probab=99.91  E-value=5.5e-25  Score=180.35  Aligned_cols=85  Identities=29%  Similarity=0.404  Sum_probs=79.1

Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCC
Q 030066           89 HKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPL  168 (183)
Q Consensus        89 q~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~  168 (183)
                      ++++++|+++||+|||.|++|+|+|++||+||++.  +|+|||+||+++|+|||+||++|++||++|||+|.+++|.+|.
T Consensus         5 ~~~~~~v~~~LN~qi~~El~As~~Yl~~a~~f~~~--~l~g~a~~f~~~A~EE~~HA~~l~~~i~~rGG~~~l~~i~~p~   82 (189)
T 3uno_A            5 EGPKTKFHALMQEQIHNEFTAAQQYVAIAVYFDSE--DLPQLAKHFYSQAVEERNHAMMLVQHLLDRDLRVEIPGVDTVR   82 (189)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCCC
Confidence            36889999999999999999999999999999964  7999999999999999999999999999999999999999999


Q ss_pred             cccCCcc
Q 030066          169 SEFDHAE  175 (183)
Q Consensus       169 ~ef~~~e  175 (183)
                      .+|+++.
T Consensus        83 ~~~~s~~   89 (189)
T 3uno_A           83 NQFDRPR   89 (189)
T ss_dssp             CCCSSHH
T ss_pred             ccchHHH
Confidence            9998764

>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli} SCOP: a.25.1.1

Probab=99.91  E-value=1.1e-24  Score=173.05  Aligned_cols=84  Identities=24%  Similarity=0.496  Sum_probs=79.7

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCCc
Q 030066           90 KFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLS  169 (183)
Q Consensus        90 ~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~~  169 (183)
                      +++++|+++||+|||.|++|+|+|++||+||++  +||+|||+||+++|+|||+||++|++||++|||+|.+++|++|..
T Consensus         1 m~~~~~~~~LN~~i~~El~A~~~Yl~~a~~~~~--~gl~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg~~~l~~i~~p~~   78 (165)
T 1eum_A            1 MLKPEMIEKLNEQMNLELYSSLLYQQMSAWCSY--HTFEGAAAFLRRHAQEEMTHMQRLFDYLTDTGNLPRINTVESPFA   78 (165)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCC
Confidence            478999999999999999999999999999984  799999999999999999999999999999999999999999999


Q ss_pred             ccCCcc
Q 030066          170 EFDHAE  175 (183)
Q Consensus       170 ef~~~e  175 (183)
                      +|+++.
T Consensus        79 ~~~~~~   84 (165)
T 1eum_A           79 EYSSLD   84 (165)
T ss_dssp             CCSCHH
T ss_pred             CCCCHH
Confidence            997753

>1krq_A Ferritin; H-chain like four-helix bundle, binding protein; 2.70A {Campylobacter jejuni} SCOP: a.25.1.1

Probab=99.90  E-value=5.5e-24  Score=169.46  Aligned_cols=84  Identities=29%  Similarity=0.447  Sum_probs=80.0

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCCc
Q 030066           90 KFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLS  169 (183)
Q Consensus        90 ~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~~  169 (183)
                      +++++|+++||+|||.|++|+|+|++||+||++  +||+||++||+++|+||++||++|++||++|||+|.+++|.+|..
T Consensus         1 m~~~~~~~~Ln~~i~~El~A~~~Yl~~a~~~~~--~gl~~~a~~f~~~a~eE~~HA~~l~~~i~~~gG~~~l~~i~~p~~   78 (167)
T 1krq_A            1 MLSKEVVKLLNEQINKEMYAANLYLSMSSWCYE--NSLDGAGAFLFAHASEESDHAKKLITYLNETDSHVELQEVKQPEQ   78 (167)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCCCCCCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCC
Confidence            478999999999999999999999999999995  699999999999999999999999999999999999999999998


Q ss_pred             ccCCcc
Q 030066          170 EFDHAE  175 (183)
Q Consensus       170 ef~~~e  175 (183)
                      +|+++.
T Consensus        79 ~~~~~~   84 (167)
T 1krq_A           79 NFKSLL   84 (167)
T ss_dssp             CCSCHH
T ss_pred             CcCCHH
Confidence            998753

>1vlg_A Ferritin; TM1128, structural genomics, JCSG, protein structu initiative, PSI, joint center for structural genomics, META protein; 2.00A {Thermotoga maritima} SCOP: a.25.1.1 PDB: 1z4a_A*

Probab=99.84  E-value=6.5e-21  Score=152.37  Aligned_cols=86  Identities=36%  Similarity=0.618  Sum_probs=81.5

Q ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCC
Q 030066           88 RHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMP  167 (183)
Q Consensus        88 Rq~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P  167 (183)
                      -++++++++++||+||+.|++++|+|++||.||++  ++++|+++||+++|+||++||++|++||+.|||+|.++.|++|
T Consensus        13 ~~~~~~~~~~~Ln~~l~~El~a~~~Yl~~a~~~~~--~~~~~la~~f~~~a~EE~~HAd~l~eri~~lGg~~~l~~i~~p   90 (176)
T 1vlg_A           13 MMVISEKVRKALNDQLNREIYSSYLYLSMATYFDA--EGFKGFAHWMKKQAQEELTHAMKFYEYIYERGGRVELEAIEKP   90 (176)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCC
T ss_pred             hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecCCCCCC
Confidence            46799999999999999999999999999999994  6999999999999999999999999999999999999999999


Q ss_pred             CcccCCcc
Q 030066          168 LSEFDHAE  175 (183)
Q Consensus       168 ~~ef~~~e  175 (183)
                      ..+|.++.
T Consensus        91 ~~~~~~~~   98 (176)
T 1vlg_A           91 PSNWNGIK   98 (176)
T ss_dssp             CCCCSSHH
T ss_pred             CCCCCCHH
Confidence            98997653

>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A*

Probab=99.81  E-value=6.6e-20  Score=143.94  Aligned_cols=82  Identities=22%  Similarity=0.181  Sum_probs=75.5

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCCc
Q 030066           90 KFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLS  169 (183)
Q Consensus        90 ~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~~  169 (183)
                      ..++++.++||+||+.|++|+++|++||.||+  +++++|+++||+++|.||++||++|++|++.+||+|.++++..| .
T Consensus         2 k~~~kvi~~LN~~l~~El~A~~~Y~~~a~~~~--~~g~~~~a~~f~~~a~eE~~HA~~l~~~i~~lGG~p~~~~~~~~-~   78 (159)
T 4am5_A            2 KGDQKVIEYLNRGLRSELTAVSQYWLHYRMLE--DWGYKDLAKKWRAESIEEMAHADKFVERILFLEGLPNLQTLDPL-R   78 (159)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSBCCCC-C
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccccccc-c
Confidence            46789999999999999999999999999998  67999999999999999999999999999999999999999754 4


Q ss_pred             ccCCc
Q 030066          170 EFDHA  174 (183)
Q Consensus       170 ef~~~  174 (183)
                      .|.++
T Consensus        79 ~~~~~   83 (159)
T 4am5_A           79 IGQTV   83 (159)
T ss_dssp             CCSSH
T ss_pred             cchhH
Confidence            56554

>2jd6_0 Ferritin homolog, ferritin; metal transport, iron, pores, archaeon, entry channels, thermostability, hyperthermophIle, ferroxidase center; 2.75A {Pyrococcus furiosus} PDB: 2jd7_0 2jd8_0 2x17_0

Probab=99.80  E-value=1.8e-19  Score=142.61  Aligned_cols=84  Identities=35%  Similarity=0.606  Sum_probs=79.1

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCCc
Q 030066           90 KFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLS  169 (183)
Q Consensus        90 ~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~~  169 (183)
                      +++++++++||+||+.|++++|+|++|++||++  ++++|+++||+++++||++||++|++|++.|||+|.++.|++|..
T Consensus         1 m~~~~~~~~Ln~~l~~El~a~~~Yl~~a~~~~~--~~~~~l~~~f~~~a~ee~~had~laeri~~lGg~p~~~~i~~~~~   78 (174)
T 2jd6_0            1 MLSERMLKALNDQLNRELYSAYLYFAMAAYFED--LGLEGFANWMKAQAEEEIGHALRFYNYIYDRNGRVELDEIPKPPK   78 (174)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCc
Confidence            468899999999999999999999999999984  699999999999999999999999999999999999999999988


Q ss_pred             ccCCcc
Q 030066          170 EFDHAE  175 (183)
Q Consensus       170 ef~~~e  175 (183)
                      +|.++.
T Consensus        79 ~~~~~~   84 (174)
T 2jd6_0           79 EWESPL   84 (174)
T ss_dssp             CCSSHH
T ss_pred             CcCCHH
Confidence            887653

>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase; 2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A

Probab=99.75  E-value=2.9e-18  Score=138.37  Aligned_cols=84  Identities=30%  Similarity=0.389  Sum_probs=77.3

Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCC
Q 030066           89 HKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPL  168 (183)
Q Consensus        89 q~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~  168 (183)
                      .+++++++++||+||+.|+.++|+|+.|++||+.  ++++|+++||+++++||++||++|++||+.|||+|.++.|+.|.
T Consensus         5 ~m~~~~v~~~LN~~la~El~a~~~Yl~~a~~~~~--~gf~~l~~~f~~~a~ee~~Had~laeri~~lGg~p~~~~i~~~~   82 (189)
T 3oj5_A            5 EGPKTKFHALMQEQIHNEFTAAQQYVAIAVYFDS--EDLPQLAKHFYSQAVEERNHAMMLVQHLLDRDLRVEIPGVDTVR   82 (189)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCC
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecCCCCCCC
Confidence            4678999999999999999999999999999975  48999999999999999999999999999999999999999998


Q ss_pred             cccCCc
Q 030066          169 SEFDHA  174 (183)
Q Consensus       169 ~ef~~~  174 (183)
                      .+|.++
T Consensus        83 ~~~~~~   88 (189)
T 3oj5_A           83 NQFDRP   88 (189)
T ss_dssp             CCCSSH
T ss_pred             CCCCCH
Confidence            888664

>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A*

Probab=99.63  E-value=1.1e-15  Score=118.23  Aligned_cols=79  Identities=23%  Similarity=0.135  Sum_probs=73.7

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCCc
Q 030066           90 KFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLS  169 (183)
Q Consensus        90 ~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~~  169 (183)
                      +-+++++++||+||+.|+.++++|++++.||+  +++++++++||+++++||++||++|++|++.+||.|.++.+.+|..
T Consensus         4 ~~~~~~~~~Ln~~la~E~~a~~~Y~~~a~~~~--~~~~~~l~~~f~~~a~ee~~Had~l~e~i~~lGg~p~~~~~~~~~~   81 (161)
T 3uoi_A            4 QGDPDVLRLLNEQLTSELTAINQYFLHSKMQD--NWGFTELAAHTRAESFDEMRHAEEITDRILLLDGLPNYQRIGSLRI   81 (161)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCCCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCCCCCCCCC
Confidence            35789999999999999999999999999998  5699999999999999999999999999999999999998887765


Q ss_pred             c
Q 030066          170 E  170 (183)
Q Consensus       170 e  170 (183)
                      .
T Consensus        82 ~   82 (161)
T 3uoi_A           82 G   82 (161)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3r2k_A Bacterioferritin, BFR; bacterial ferritin, iron binding, iron storage, iron homeost iron release, iron mobilization; 1.55A {Pseudomonas aeruginosa} SCOP: a.25.1.0 PDB: 3r2h_A 3r2l_A 3r2m_A 3r2o_A 3r2r_A 3r2s_A

Probab=99.62  E-value=1.4e-15  Score=117.07  Aligned_cols=75  Identities=15%  Similarity=0.116  Sum_probs=70.0

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCC
Q 030066           90 KFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMP  167 (183)
Q Consensus        90 ~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P  167 (183)
                      +.+++++++||+||+.|+.++++|++++.||+  +++++++++||+++++||++||++|++|++.+||.|.+ ++.++
T Consensus         2 ~~~~~~~~~Ln~~la~E~~a~~~Y~~~a~~~~--~~~~~~l~~~f~~~a~ee~~had~l~eri~~lGg~p~~-~~~~~   76 (154)
T 3r2k_A            2 QGHPEVIDYLNTLLTGELAARDQYFIHSRMYE--DWGFSKLYERLNHEMEEETQHADALLRRILLLEGTPRM-RPDDI   76 (154)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC-CCCCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-CCCCC
Confidence            45789999999999999999999999999998  56999999999999999999999999999999999999 77643

>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A

Probab=99.62  E-value=5.6e-16  Score=126.88  Aligned_cols=78  Identities=21%  Similarity=0.391  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCCcccC
Q 030066           93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFD  172 (183)
Q Consensus        93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~~ef~  172 (183)
                      +++++.||+||+.|++|++.|++||.|+++.  |++|+|+||+.+|++|++||+++++|++  ||.|.++++ .|...|+
T Consensus         7 ~~t~~~Ln~a~~~E~~A~~~Yl~~A~~a~~~--G~~~iA~~f~~~A~eE~~HA~~~~~~l~--gg~~~i~~~-~p~~~~~   81 (191)
T 1lko_A            7 SRTEKNILTAFAGESQARNRYNYFGGQAKKD--GFVQISDIFAETADQEREHAKRLFKFLE--GGDLEIVAA-FPAGIIA   81 (191)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHHHHCC--SSCCCCCCC-CCCCCCC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CcHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCccccCc-CCccccC
Confidence            3799999999999999999999999999965  9999999999999999999999999998  999999995 4777787


Q ss_pred             Ccc
Q 030066          173 HAE  175 (183)
Q Consensus       173 ~~e  175 (183)
                      ++.
T Consensus        82 s~~   84 (191)
T 1lko_A           82 DTH   84 (191)
T ss_dssp             CHH
T ss_pred             CHH
Confidence            654

>2y3q_A Bacterioferritin; metal binding protein, redox; HET: HEM; 1.55A {Escherichia coli} PDB: 1bfr_A* 1bcf_A* 2htn_A* 2vxi_A* 3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A* 3e2c_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A*

Probab=99.59  E-value=5.1e-15  Score=113.47  Aligned_cols=79  Identities=22%  Similarity=0.111  Sum_probs=73.8

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCCc
Q 030066           90 KFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLS  169 (183)
Q Consensus        90 ~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~~  169 (183)
                      +.++++++.||++|+.|+.+++.|+.++.+|+  +.+++++++||+++++||++||++|++|++.+||.|.++.+.+|..
T Consensus         2 ~~~~~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~--~~~~~~l~~~f~~~a~ee~~Ha~~l~e~i~~lgg~p~~~~~~~~~~   79 (158)
T 2y3q_A            2 KGDTKVINYLNKLLGNELVAINQYFLHARMFK--NWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNI   79 (158)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCCCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCCCCCcCCC
Confidence            46789999999999999999999999999998  4699999999999999999999999999999999999988887765


Q ss_pred             c
Q 030066          170 E  170 (183)
Q Consensus       170 e  170 (183)
                      +
T Consensus        80 ~   80 (158)
T 2y3q_A           80 G   80 (158)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3qb9_A Bacterioferritin, BFR; cytosol, structural genomics, TB structural genomics consort TBSGC, metal binding protein; HET: HEM; 2.11A {Mycobacterium tuberculosis} PDB: 2wtl_A* 3bkn_A*

Probab=99.58  E-value=5.6e-15  Score=116.08  Aligned_cols=79  Identities=23%  Similarity=0.133  Sum_probs=74.2

Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCC
Q 030066           89 HKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPL  168 (183)
Q Consensus        89 q~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~  168 (183)
                      ++.++++++.||++|+.|+.+++.|+.++.+|+  +++++++++||+++++||++||++|++|++.+||.|.++.|..|.
T Consensus         3 m~~~~~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~--~~~~~~l~~~f~~~a~eE~~Ha~~l~e~i~~lgg~p~~~~i~~~~   80 (174)
T 3qb9_A            3 MQGDPDVLRLLNEQLTSELTAINQYFLHSKMQD--NWGFTELAAHTRAESFDEMRHAEEITDRILLLDGLPNYQRIGSLR   80 (174)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCCC
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCCCCC
Confidence            456789999999999999999999999999998  469999999999999999999999999999999999999988876


Q ss_pred             c
Q 030066          169 S  169 (183)
Q Consensus       169 ~  169 (183)
                      .
T Consensus        81 ~   81 (174)
T 3qb9_A           81 I   81 (174)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3fvb_A Bacterioferritin; niaid, ssgcid, decode, structural genomics, seattle structural genomics center for infectious disease; HET: HEM; 1.81A {Brucella melitensis biovar ABORTUS2308}

Probab=99.57  E-value=7.2e-15  Score=117.79  Aligned_cols=80  Identities=24%  Similarity=0.186  Sum_probs=74.3

Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCC
Q 030066           89 HKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPL  168 (183)
Q Consensus        89 q~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~  168 (183)
                      ++.+++++++||+||+.|+.+++.|++++.||+  +++++++++||+++++||++||++|++|++.+||.|.++.+.+|.
T Consensus        22 M~~~~~~~~~LN~~la~E~~a~~~Y~~~a~~~~--~~~~~~l~~~f~~~a~eE~~Had~laeri~~lGg~p~~~~~~~~~   99 (182)
T 3fvb_A           22 MKGEPKVIERLNEALFLELGAVNQYWLHYRLLN--DWGYTRLAKKEREESIEEMHHADKLIDRIIFLEGFPNLQTVSPLR   99 (182)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSBCCCCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcCCCCCCCC
Confidence            457999999999999999999999999999997  569999999999999999999999999999999999998887775


Q ss_pred             cc
Q 030066          169 SE  170 (183)
Q Consensus       169 ~e  170 (183)
                      ..
T Consensus       100 ~~  101 (182)
T 3fvb_A          100 IG  101 (182)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxida activity, heme, metal binding protein; HET: HEM; 2.80A {Rhodobacter sphaeroides} SCOP: a.25.1.1

Probab=99.57  E-value=1e-14  Score=112.97  Aligned_cols=77  Identities=19%  Similarity=0.185  Sum_probs=71.8

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCC
Q 030066           90 KFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPL  168 (183)
Q Consensus        90 ~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~  168 (183)
                      +.++++++.||++|+.|+.+++.|+.++.+|+  +++++++++||+++++||++||++|++|++.+||.|.++.+.+|.
T Consensus         2 ~~~~~~~~~Ln~~la~E~~a~~~Y~~~a~~~~--~~~~~~l~~~f~~~a~ee~~Had~l~eri~~lGg~p~~~~~~~~~   78 (161)
T 3gvy_A            2 QGDAKVIEYLNAALRSELTAVSQYWLHYRLQE--DWGFGSIAHKSRKESIEEMHHADKLIQRIIFLGGHPNLQRLNPLR   78 (161)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCccCCCCCCC
Confidence            45789999999999999999999999999998  469999999999999999999999999999999999998887664

>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM Fe-coproporphyrin III cofactor, iron storage-electron complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans} SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A*

Probab=99.56  E-value=7.2e-15  Score=116.12  Aligned_cols=82  Identities=20%  Similarity=0.147  Sum_probs=76.6

Q ss_pred             ccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcC
Q 030066           86 LARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSIL  165 (183)
Q Consensus        86 ~~Rq~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~  165 (183)
                      .+|++.++++++.||.+|+.|+.+++.|+.|+.+|++  .+++++++||+++++||++||++|++|++.+||.|.++.+.
T Consensus         3 ~~~~~~~~~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~~--~~~~~l~~~f~~~a~eE~~Ha~~l~e~i~~lgg~p~~~~~~   80 (179)
T 1nfv_A            3 GNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDD--MDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEG   80 (179)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTBHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSS
T ss_pred             cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCcCCCCC
Confidence            4689999999999999999999999999999999995  58999999999999999999999999999999999998887


Q ss_pred             CCCc
Q 030066          166 MPLS  169 (183)
Q Consensus       166 ~P~~  169 (183)
                      .|..
T Consensus        81 ~~~~   84 (179)
T 1nfv_A           81 KVVT   84 (179)
T ss_dssp             CCCC
T ss_pred             cCCC
Confidence            7654

>2vzb_A Putative bacterioferritin-related protein; DPS, DPSL, iron, oxidative stress, metal transport; 2.30A {Bacteroides fragilis}

Probab=99.53  E-value=1.7e-14  Score=111.97  Aligned_cols=75  Identities=19%  Similarity=0.196  Sum_probs=70.4

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCC---cCC
Q 030066           90 KFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQS---ILM  166 (183)
Q Consensus        90 ~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~---I~~  166 (183)
                      +.+++++++||+||+.|+.+++.|++++.||+  +.++++++.||+++++||++||++|++|++.+||.|.++.   +..
T Consensus        13 m~~~~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~--~~~~~~l~~~f~~~a~ee~~Had~lae~i~~lGg~p~~~~~~~~~~   90 (170)
T 2vzb_A           13 LDVKSLIDQLNAALSEEWLAYYQYWVGALVVE--GAMRADVQGEFEEHAEEERHHAQLIADRIIELEGVPVLDPKKWFEL   90 (170)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCB--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCGGGHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCHHHHHHh
Confidence            56789999999999999999999999999998  5699999999999999999999999999999999999887   555

>1jgc_A Bacterioferritin, BFR; iron storage protein, metal binding protein; HET: HEM; 2.60A {Rhodobacter capsulatus} SCOP: a.25.1.1

Probab=99.53  E-value=4.2e-14  Score=108.66  Aligned_cols=78  Identities=22%  Similarity=0.149  Sum_probs=72.6

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCCcc
Q 030066           91 FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSE  170 (183)
Q Consensus        91 ~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~~e  170 (183)
                      -++++++.||++|+.|+.+++.|+.++.+|+  +.+++++++||+++++||++||++|++|++.+||.|.++.+..|...
T Consensus         3 ~~~~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~--~~~~~~l~~~f~~~a~ee~~Ha~~l~e~i~~lgg~p~~~~~~~~~~~   80 (161)
T 1jgc_A            3 GDAKVIEFLNAALRSELTAISQYWVHFRLQE--DWGLAKMAKKSREESIEEMGHADKIIARILFLEGHPNLQKLDPLRIG   80 (161)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCCCCC
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCCCCCcCCCC
Confidence            4678999999999999999999999999998  46999999999999999999999999999999999999888877544

>2fkz_A Bacterioferritin; ferroxidase, DIIRON site, iron T metal binding protein; HET: HEM; 2.00A {Azotobacter vinelandii} SCOP: a.25.1.1 PDB: 2fl0_A* 1sof_A*

Probab=99.52  E-value=6.3e-14  Score=106.61  Aligned_cols=78  Identities=22%  Similarity=0.139  Sum_probs=72.1

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCCc
Q 030066           90 KFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLS  169 (183)
Q Consensus        90 ~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~~  169 (183)
                      +.+++++++||++|+.|+.+++.|+.++.+++  +.++++++.||++++.||++||++|.+|++.+||.|.+..+..|..
T Consensus         2 ~~~~~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~--~~~~~~l~~~f~~~a~eE~~Ha~~l~e~i~~lgg~p~~~~~~~~~~   79 (155)
T 2fkz_A            2 KGDKIVIQHLNKILGNELIAINQYFLHARMYE--DWGLEKLGKHEYHESIDEMKHADKLIKRILFLEGLPNLQELGKLLI   79 (155)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCCCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCC
Confidence            45788999999999999999999999999998  4699999999999999999999999999999999999987776644

>1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus tokodaii strain 7, FOU bundle, domain swapping, metal binding site plasticity; 1.70A {Sulfolobus tokodaii} SCOP: a.25.1.1

Probab=99.50  E-value=4.1e-14  Score=109.66  Aligned_cols=63  Identities=13%  Similarity=0.117  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHh--cCC
Q 030066           93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNK--RGG  157 (183)
Q Consensus        93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~--RGG  157 (183)
                      +++++.||+|++.|++|+++|++||.||++  +|++++|+||+++|.+|+.||+++++|++.  +|+
T Consensus         7 ~~~~~~Ln~a~~~E~~A~~~Y~~~A~~a~~--~g~~~~a~~f~~~A~eE~~HA~~~~~~l~~~~lg~   71 (144)
T 1j30_A            7 TKTAENLKQGFIGESMANRRYLYFAKRADE--EGYPEIAGLLRSIAEGETAHAFGHLDFIRQGGLTD   71 (144)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence            359999999999999999999999999994  699999999999999999999999999999  755

>2c41_A DPS family DNA-binding stress response protein; iron-binding/oxidation protein, DPS (DNA-binding proteins from starved cells); HET: PG4 PGE; 1.81A {Thermosynechococcus elongatus}

Probab=99.44  E-value=4.8e-13  Score=104.60  Aligned_cols=81  Identities=10%  Similarity=0.055  Sum_probs=73.9

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeC--------
Q 030066           91 FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQ--------  162 (183)
Q Consensus        91 ~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~--------  162 (183)
                      -.+++.++||+|++.|+.+++.|+.++.||.  ..++.+++.||+++++||++||+++.+|++.+||.|..+        
T Consensus         7 ~~~~v~~~LN~~La~e~~~~~~y~~~hw~v~--g~~f~~lh~~~~~~~~ee~~had~iaErI~~lGg~p~~~~~~~~~~s   84 (158)
T 2c41_A            7 LKEQVLTTLKREQANAVVMYLNYKKYHWLTY--GPLFRDLHLLFEEQGSEVFAMIDELAERSLMLDGQPVADPADYLKVA   84 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSGGGHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhheE--CcChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHC
Confidence            3578999999999999999999999999999  469999999999999999999999999999999999998        


Q ss_pred             CcCCCCcccCCc
Q 030066          163 SILMPLSEFDHA  174 (183)
Q Consensus       163 ~I~~P~~ef~~~  174 (183)
                      .|+.|+. +.++
T Consensus        85 ~i~~~~~-~~~~   95 (158)
T 2c41_A           85 TVTPSSG-QLTV   95 (158)
T ss_dssp             CSCCCCS-CCCH
T ss_pred             CCCCCCC-CCCH
Confidence            4787776 5554

>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str}

Probab=99.43  E-value=6.4e-13  Score=100.36  Aligned_cols=74  Identities=23%  Similarity=0.247  Sum_probs=68.3

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCC
Q 030066           91 FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMP  167 (183)
Q Consensus        91 ~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P  167 (183)
                      ..+++++.||++|+.|+.+++.|+.++.+++  +.+++++++||+++++||++||++|.+|++.+||.|.+ .+..+
T Consensus         7 ~~~~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~--~~~~~~l~~~f~~~a~ee~~Ha~~l~e~i~~lgg~p~~-~~~~~   80 (149)
T 2qqy_A            7 DVKELIEGLNEDLAGEYSAIIMYNHNAATVS--GIYRQVLKPFFESEISDEQGHALYLAEKIKTLGGTPTT-IPLRV   80 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC-CCCCC
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCC-CCCCC
Confidence            4578999999999999999999999999998  56899999999999999999999999999999999988 66544

>1ji5_A DLP-1; dodecamer, four-helix bundle, metal transport; 2.50A {Bacillus anthracis} SCOP: a.25.1.1

Probab=99.42  E-value=5.9e-13  Score=101.30  Aligned_cols=75  Identities=19%  Similarity=0.147  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCC--------cCC
Q 030066           95 CEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQS--------ILM  166 (183)
Q Consensus        95 ~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~--------I~~  166 (183)
                      +.++||+|++.|+ +.|+|+.|+.|+-. ..+++++++||+++++||++||+++++|++.+||.|....        |..
T Consensus         2 ~~~~Ln~~la~e~-~~~~~~~~~hw~v~-g~~f~~l~~~~~~~~~ee~~had~laeri~~lGg~p~~~~~~~~~~s~i~~   79 (142)
T 1ji5_A            2 VIEVLNKQVADWS-VLFTKLHNFHWYVK-GPQFFTLHEKFEELYTESATHIDEIAERILAIGGKPVATMKEYLEISSIQE   79 (142)
T ss_dssp             HHHHHHHHHHHHH-HHHHHHHHHHHHCC-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHCCCCC
T ss_pred             HHHHHHHHHHHHH-HHHHHHHhhhhccc-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHhhCCCCC
Confidence            5789999999999 99999999999532 4699999999999999999999999999999999999976        888


Q ss_pred             CCccc
Q 030066          167 PLSEF  171 (183)
Q Consensus       167 P~~ef  171 (183)
                      |+.+|
T Consensus        80 ~~~~~   84 (142)
T 1ji5_A           80 AAYGE   84 (142)
T ss_dssp             CCTTC
T ss_pred             CCCCC
Confidence            88777

>2vxx_A Starvation induced DNA binding protein; stress response protein, DPS, oxidation, iron binding, ferroxidase centre; HET: PG4; 2.40A {Synechococcus elongatus}

Probab=99.36  E-value=3e-12  Score=103.45  Aligned_cols=84  Identities=15%  Similarity=0.127  Sum_probs=76.0

Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeC------
Q 030066           89 HKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQ------  162 (183)
Q Consensus        89 q~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~------  162 (183)
                      ..-.+++.++||++++.|+.+.+.|+.++.|+.  +.++++++.||.++++||++||++|.+|++.+||.|...      
T Consensus        23 ~~~~~~vi~~LN~~La~e~~a~~~y~~~hw~v~--g~~f~~lh~~~~~~~~ee~~had~laErI~~LGg~p~~~~~~~~~  100 (192)
T 2vxx_A           23 KATTTPICEGMNRLLASFQALYLQYQKHHFVVE--GAEFYPLHQFFQDCYEQVQDHVHALGERLNGLGGVPVAGFQQLAA  100 (192)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence            345578999999999999999999999999998  458999999999999999999999999999999999997      


Q ss_pred             --CcCCCCcccCCc
Q 030066          163 --SILMPLSEFDHA  174 (183)
Q Consensus       163 --~I~~P~~ef~~~  174 (183)
                        .|..|+.+|.++
T Consensus       101 ~s~i~e~~~~~~~~  114 (192)
T 2vxx_A          101 LCCFTPEPEGAFNC  114 (192)
T ss_dssp             HCSSCCCCSSBCCH
T ss_pred             HCcCCCCCCCCCCH
Confidence              888877766554

>1n1q_A DPS protein; four-helix bundle, unknown function; 2.20A {Brevibacillus brevis} SCOP: a.25.1.1

Probab=99.34  E-value=4.4e-12  Score=97.72  Aligned_cols=82  Identities=17%  Similarity=0.092  Sum_probs=71.6

Q ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeC-----
Q 030066           88 RHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQ-----  162 (183)
Q Consensus        88 Rq~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~-----  162 (183)
                      +.+.++++.++||+|++.|+.+.+.|+.+..++.  ..++.|++.||+++++||++||+++.+|++.+||.|..+     
T Consensus         2 ~~~~~~~v~~~LN~~la~e~~~~~~~~~~hw~v~--g~~f~~lh~~~~~~~~ee~~had~laeri~~lGg~p~~~~~~~~   79 (149)
T 1n1q_A            2 KTSIQQLVAVLLNRQVANWVVLYVKLHNFHWNVN--GPNFFTLHEKFEELYTEASGHIDTLAERVLSIGGSPIATLAASL   79 (149)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHhccchhee--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
Confidence            3456789999999999999777777776666666  569999999999999999999999999999999999998     


Q ss_pred             ---CcCCCCccc
Q 030066          163 ---SILMPLSEF  171 (183)
Q Consensus       163 ---~I~~P~~ef  171 (183)
                         .|+.|+.+|
T Consensus        80 ~~s~i~~~~~~~   91 (149)
T 1n1q_A           80 EEASIKEATGGE   91 (149)
T ss_dssp             HHCCSCCCCSCC
T ss_pred             hHCCCCCCCCCC
Confidence               588888777

>1jig_A DLP-2; dodecamer, four-helix bundle, metal transport; 1.46A {Bacillus anthracis} SCOP: a.25.1.1

Probab=99.31  E-value=1.1e-11  Score=94.89  Aligned_cols=77  Identities=18%  Similarity=0.075  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeC--------Cc
Q 030066           93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQ--------SI  164 (183)
Q Consensus        93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~--------~I  164 (183)
                      +++.++||+|++.|+.+.+.|..+..++.  ..++.|++.||+++++||++||+++.+|++.+||.|..+        .|
T Consensus         4 ~~v~~~LN~~la~~~~~~~~~~~~hw~v~--g~~f~~lh~~~~~~~~ee~~had~laeri~~lGg~p~~~~~~~~~~s~i   81 (146)
T 1jig_A            4 TNVVEVLNKQVANWNVLYVKLHNYHWYVT--GPHFFTLHEKFEEFYNEAGTYIDELAERILALEGKPLATMKEYLATSSV   81 (146)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhccc--CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHhHCcC
Confidence            57899999999999888887777777767  569999999999999999999999999999999999998        58


Q ss_pred             CCCCccc
Q 030066          165 LMPLSEF  171 (183)
Q Consensus       165 ~~P~~ef  171 (183)
                      +.|+.+|
T Consensus        82 ~~~~~~~   88 (146)
T 1jig_A           82 NEGTSKE   88 (146)
T ss_dssp             CCCCSCC
T ss_pred             CCCCCCC
Confidence            8888777

>2d5k_A DPS, DPS family protein; four helix bundle, metal binding protein; 1.85A {Staphylococcus aureus subsp}

Probab=99.28  E-value=1.6e-11  Score=96.10  Aligned_cols=78  Identities=17%  Similarity=0.126  Sum_probs=70.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeC--------C
Q 030066           92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQ--------S  163 (183)
Q Consensus        92 s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~--------~  163 (183)
                      ++++.++||+|++.|+.+.+.|..+..++.  ..++.|++.||+++++||++||+++.+|++.+||.|..+        .
T Consensus         5 ~~~v~~~LN~~La~e~~~~~~~~~~hw~v~--g~~f~~lh~~~~~~~~ee~~had~iaERI~~lGg~p~~~~~~~~~~s~   82 (156)
T 2d5k_A            5 QQDVVKELNQQVANWTVAYTKLHNFHWYVK--GPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSI   82 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhheeeeE--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCC
Confidence            467899999999999988888887777777  569999999999999999999999999999999999998        5


Q ss_pred             cCCCCccc
Q 030066          164 ILMPLSEF  171 (183)
Q Consensus       164 I~~P~~ef  171 (183)
                      |+.|+.+|
T Consensus        83 i~~~~~~~   90 (156)
T 2d5k_A           83 VKEAAKGY   90 (156)
T ss_dssp             SCCCCSCC
T ss_pred             CCCCCCCC
Confidence            88888777

>2clb_A DPS-like protein; DI-iron carboxylate, hypothetical protein, bacterioferritin, hydrogen peroxide, metal binding protein, archaea; 2.4A {Sulfolobus solfataricus}

Probab=99.24  E-value=1.7e-11  Score=99.36  Aligned_cols=82  Identities=13%  Similarity=0.203  Sum_probs=72.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeee--------CC
Q 030066           92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKL--------QS  163 (183)
Q Consensus        92 s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l--------~~  163 (183)
                      .+++.++||+|++.|+.+.+.|+.++.++.  ..++.+++.||+++++||++||++|++|++.+||.|..        ..
T Consensus        23 ~~~v~~~LN~~La~e~~~~~~y~~~hw~v~--G~~f~~lh~~f~~~~~ee~~haD~iaERI~~LGg~p~~~~~~~~~~s~  100 (188)
T 2clb_A           23 IKKLVDKLVKATAAEFTTYYYYTILRMHLT--GMEGEGLKEIAEDARLEDRLHFELMTQRIYELGGGLPRDIRQLADISA  100 (188)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--HHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHhcc
Confidence            578999999999999999999998888777  46899999999999999999999999999999999994        47


Q ss_pred             cC-C-CCcccCCcc
Q 030066          164 IL-M-PLSEFDHAE  175 (183)
Q Consensus       164 I~-~-P~~ef~~~e  175 (183)
                      |. . |+.+|.+++
T Consensus       101 I~~e~~~~~~~~~~  114 (188)
T 2clb_A          101 CSDAYLPENWKDPK  114 (188)
T ss_dssp             SCCCCCCTTTTSHH
T ss_pred             CCccCCCCCCCCHH
Confidence            88 7 777776543

>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A

Probab=99.14  E-value=1.1e-10  Score=96.59  Aligned_cols=76  Identities=11%  Similarity=0.054  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCCcccCCc
Q 030066           95 CEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHA  174 (183)
Q Consensus        95 ~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~~ef~~~  174 (183)
                      +++.||.+++.|.++.+.|+.|+.+++.+  |++++|++|+..+.+|+.||+++++++..+||.+.+ .+. |...+++.
T Consensus        29 T~~nL~~a~~gE~~a~~~Y~~~A~~A~~e--G~~~iA~~F~~~A~~E~~HA~~~~~~l~~l~~~~~i-~~~-p~~~~gst  104 (202)
T 1yuz_A           29 TLENLKAAIAGETGAHAKYTAFAKAAREQ--GYEQIARLFEATAAAELIHIGLEYALVAEMEPGYEK-PTV-AAPSAYSC  104 (202)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCC-CCC---CCCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcee-ccC-CccCCCCH
Confidence            89999999999999999999999999965  999999999999999999999999999999999999 887 65456554

>1tjo_A Iron-rich DPSA-homolog protein; ferritin, low-iron, metal binding protein; 1.60A {Halobacterium salinarum} SCOP: a.25.1.1 PDB: 1moj_A 1tk6_A 1tko_A 1tkp_A

Probab=98.87  E-value=1.2e-08  Score=81.97  Aligned_cols=82  Identities=20%  Similarity=0.252  Sum_probs=68.4

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeee--------C
Q 030066           91 FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKL--------Q  162 (183)
Q Consensus        91 ~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l--------~  162 (183)
                      -.+++.+.||+++ .++.+.|.|+.++.|+-. ..++.+++.||.++++|+++||+++.+|++.+||.|..        .
T Consensus        26 ~~~~vi~~LN~~L-a~~~~~~~~~~~~hw~v~-G~~f~~lh~~~ee~~~e~~~haD~laERI~~LGg~P~~~~~~~~~~s  103 (182)
T 1tjo_A           26 RAEQCVDALNADL-ANVYVLYHQLKKHHWNVE-GAEFRDLHLFLGEAAETAEEVADELAERVQALGGVPHASPETLQAEA  103 (182)
T ss_dssp             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCC-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHC
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHhhhhee-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHhC
Confidence            3467899999999 555567777777888744 46999999999999999999999999999999999998        7


Q ss_pred             CcCCCCcccCCc
Q 030066          163 SILMPLSEFDHA  174 (183)
Q Consensus       163 ~I~~P~~ef~~~  174 (183)
                      .|+.++.++.++
T Consensus       104 ~i~e~~~~~~~~  115 (182)
T 1tjo_A          104 SVDVEDEDVYDI  115 (182)
T ss_dssp             CSCCCCSSBCCH
T ss_pred             CCCCCCCCCCCH
Confidence            788777665443

>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A

Probab=98.58  E-value=1.3e-07  Score=76.25  Aligned_cols=59  Identities=15%  Similarity=0.140  Sum_probs=55.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 030066           92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQ  152 (183)
Q Consensus        92 s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~  152 (183)
                      .+++++.||+.+..|.++...|+.+|.++++.  |++.+|++|++.|.+|++||.++++++
T Consensus         4 ~~~T~~nL~~afagEs~A~~~Y~~~A~~A~~e--G~~~iA~~F~~~A~~E~~HA~~~~~~L   62 (170)
T 3pwf_A            4 RTMTKKFLEEAFAGESMAHMRYLIFAEKAEQE--GFPNIAKLFRAIAYAEFVHAKNHFIAL   62 (170)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35789999999999999999999999999965  999999999999999999999999996

>4di0_A Rubrerythrin; ssgcid, seattle structural genomics center for infectious DI peroxidase, oxidoreductase; 1.90A {Burkholderia pseudomallei}

Probab=98.53  E-value=1.9e-07  Score=73.32  Aligned_cols=62  Identities=21%  Similarity=0.295  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 030066           93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRG  156 (183)
Q Consensus        93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RG  156 (183)
                      +++++.|+.++.-|.++...|+.+|..++++  |++.+|++|++.|.+|++||.++++++...|
T Consensus        11 ~~t~~nL~~afagEs~A~~~Y~~~A~~A~~e--G~~~iA~~F~~~A~~E~~HA~~~~~~L~~~~   72 (144)
T 4di0_A           11 SKTEENLKYAFAGESQANRRYLYFASKADVE--GQNDIAALFRSTAEGETGHAHGHLEYLEAVG   72 (144)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--ChHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            4789999999999999999999999999965  9999999999999999999999999986544

>1o9r_A Agrobacterium tumefaciens DPS; iron-binding protein, DNA protection from oxidative damage, DNA-binding, iron- binding protein; 1.45A {Agrobacterium tumefaciens} SCOP: a.25.1.1 PDB: 3ge4_A*

Probab=98.02  E-value=4.2e-05  Score=59.95  Aligned_cols=69  Identities=10%  Similarity=0.139  Sum_probs=63.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeC
Q 030066           92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQ  162 (183)
Q Consensus        92 s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~  162 (183)
                      .+++.+.||+.+..|+.+...|+...-+..  ..++..+..+|.+++.++++|++.+.+++...||.|..+
T Consensus        15 ~~~vi~~Ln~~La~~~~l~~q~~~~hw~v~--G~~f~~lh~~~ee~~~e~~~~aD~lAERI~~LGg~P~~~   83 (162)
T 1o9r_A           15 KSTVIGILNESLASVIDLALVTKQAHWNLK--GPQFIAVHELLDTFRTQLDNHGDTIAERVVQLGGTALGS   83 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCB--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhheE--CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence            457899999999999999999998766666  568999999999999999999999999999999999886

>2fjc_A Antigen TPF1; mini ferritin, iron binding protein, metal transport; 2.50A {Treponema pallidum} SCOP: a.25.1.1

Probab=98.01  E-value=3.1e-05  Score=60.47  Aligned_cols=70  Identities=9%  Similarity=0.024  Sum_probs=64.0

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeC
Q 030066           91 FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQ  162 (183)
Q Consensus        91 ~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~  162 (183)
                      -.+++.+.||+.+..|+.+.++|+...-+..  ..++..+..+|.++++++++||+.+.+++...||.|..+
T Consensus        10 ~~~~vi~~Ln~~La~~~~~~~q~~~~hw~v~--G~~f~~lh~~~ee~~~e~~~~aD~lAERI~~LGg~P~~~   79 (156)
T 2fjc_A           10 AIAAICEQLRQHVADLGVLYIKLHNYHWHIY--GIEFKQVHELLEEYYVSVTEAFDTIAERLLQLGAQAPAS   79 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhheE--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence            3578899999999999999999998777777  569999999999999999999999999999999999874

>3ak8_A DNA protection during starvation protein; DPS-like protein, dodecamer, iron-binding protein, metal BIN protein, oxidoreductase; HET: DNA; 1.25A {Salmonella enterica subsp} PDB: 3ak9_A* 1f33_A* 1f30_A* 1dps_A 1jts_A* 1jre_A* 1l8h_A* 1l8i_A* 4dyu_A*

Probab=97.95  E-value=6.6e-05  Score=59.39  Aligned_cols=69  Identities=10%  Similarity=0.099  Sum_probs=61.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeC
Q 030066           92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQ  162 (183)
Q Consensus        92 s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~  162 (183)
                      .+++.+.||+.+.-|+.+...|+...-+..  ..++..+..+|.++++++++|++.+.+++...||.|..+
T Consensus        26 ~~~vi~~Ln~~LA~~~~l~~k~~~~hw~v~--G~~f~~lh~~~ee~~~e~~~~aD~lAERI~~LGg~P~~t   94 (167)
T 3ak8_A           26 KKATVELLNRQVIQFIDLSLITKQAHWNMR--GANFIAVHEMLDGFRTALTDHLDTMAERAVQLGGVALGT   94 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCB--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhheeE--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence            457899999999999999999876555543  679999999999999999999999999999999999875

>2chp_A MRGA, metalloregulation DNA-binding stress protein; DNA-binding protein, DPS, dodecameric, ferritin; 2.0A {Bacillus subtilis}

Probab=97.93  E-value=5.6e-05  Score=58.82  Aligned_cols=68  Identities=18%  Similarity=0.180  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeC
Q 030066           93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQ  162 (183)
Q Consensus        93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~  162 (183)
                      +++.+.||+.+..|+.+...|+...-+..  ..++..+..+|.++++++++|++.+.+++...||.|..+
T Consensus        11 ~~vi~~Ln~~La~~~~~~~q~~~~hw~v~--G~~f~~lh~~~ee~~~e~~~~~D~lAERI~~LGg~P~~~   78 (153)
T 2chp_A           11 TLVENSLNTQLSNWFLLYSKLHRFHWYVK--GPHFFTLHEKFEELYDHAAETVDTIAERLLAIGGQPVAT   78 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhheE--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Confidence            46899999999999999999996555555  579999999999999999999999999999999999874

>2bk6_A Non-heme iron-containing ferritin; DPS (DNA binding protein from starved cells), ferroxidase center, mutagenesis study; 2.19A {Listeria innocua} SCOP: a.25.1.1 PDB: 1qgh_A 2bjy_A 2iy4_A 2bkc_A

Probab=97.92  E-value=3.7e-05  Score=59.95  Aligned_cols=68  Identities=16%  Similarity=0.085  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeC
Q 030066           93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQ  162 (183)
Q Consensus        93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~  162 (183)
                      +++.+.||+.+.-|+.+.+.|+...-+..  ..++..+..+|.+++.++++|+..+.+++...||.|...
T Consensus         7 ~~vi~~Ln~~La~~~~~~~q~~~~hw~v~--G~~f~~lh~~~ee~~~e~~~~~D~lAERI~~Lgg~P~~~   74 (156)
T 2bk6_A            7 VDTKEFLNHQVANLNVFTVKIHQIGWYMR--GHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFST   74 (156)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchheE--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Confidence            46889999999999999999998777777  569999999999999999999999999999999999874

>2yjk_A AFP, DPS; metal-binding protein, iron uptake, ferritin fold; 2.00A {Microbacterium arborescens} PDB: 2yjj_A

Probab=97.90  E-value=6.1e-05  Score=59.16  Aligned_cols=71  Identities=4%  Similarity=-0.018  Sum_probs=62.9

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCC
Q 030066           91 FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQS  163 (183)
Q Consensus        91 ~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~  163 (183)
                      -.+++.+.||+++.-|+.+.+.|+...-++.  ..++..+..+|.++++++++|++.+.+++...||.|....
T Consensus        17 ~~~~vi~~Ln~~La~~~~l~~q~~~~hw~v~--G~~f~~lh~~~ee~~~e~~~~aD~lAERI~~LGg~P~~t~   87 (161)
T 2yjk_A           17 VAAAAAQFLTPVVHKMQALVVNGKQAHWNVR--GSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRV   87 (161)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhheeeE--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCH
Confidence            3467899999999999999999996555555  5799999999999999999999999999999999998743

>2z90_A Starvation-inducible DNA-binding protein or FINE tangled PILI major subunit; quarternary assembly, ferroxidation; 2.40A {Mycobacterium smegmatis str}

Probab=97.88  E-value=7.9e-05  Score=58.60  Aligned_cols=71  Identities=10%  Similarity=0.004  Sum_probs=62.4

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeC
Q 030066           90 KFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQ  162 (183)
Q Consensus        90 ~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~  162 (183)
                      +-.+++.+.||+++..|+.+...|+...-+..  ..++..+..+|.++++++++|++.+.+++...||.|..+
T Consensus        14 ~~~~~vi~~Ln~~La~~~~l~~~~~~~hW~v~--G~~f~~lh~~~ee~~~e~~~~aD~lAERIl~LGg~P~~t   84 (161)
T 2z90_A           14 HATPEFGGNLQKVLVDLIELSLQGKQAHWNVV--GSNFRDLHLQLDELVDFAREGSDTIAERMRALDAVPDGR   84 (161)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEE--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhhheE--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Confidence            44678999999999999999999865544444  458999999999999999999999999999999999885

>2c2u_A DPS, DNA-binding stress response protein; DNA-binding protein, iron; 1.1A {Deinococcus radiodurans} PDB: 2c2f_A 2f7n_A

Probab=97.80  E-value=7.8e-05  Score=61.61  Aligned_cols=68  Identities=9%  Similarity=0.060  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeC
Q 030066           93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQ  162 (183)
Q Consensus        93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~  162 (183)
                      +++.+.||+++..|+.+.+.|+...-+..  ..++..+..+|.++++++++|++.+.+++...||.|...
T Consensus        59 ~~vi~~LN~~LAde~~l~~qy~~~HWnv~--G~~F~~LHe~~ee~~~e~~~haD~lAERIl~LGG~P~~t  126 (207)
T 2c2u_A           59 QTVAETLQRNLATTISLYLKFKKYHWDIR--GRFFRDLHLAYDEFIAEIFPSIDEQAERLVALGGSPLAA  126 (207)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTBCCCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence            46899999999999999999996555555  579999999999999999999999999999999999874

>2yw6_A DNA protection during starvation protein; DNA-binding protein, quarternary assembly, ferroxidation, oxidoreductase; HET: DNA; 2.53A {Mycobacterium smegmatis} SCOP: a.25.1.1 PDB: 1vei_A 1vel_A 1veq_A 1uvh_A* 2yw7_A

Probab=97.80  E-value=0.00011  Score=59.20  Aligned_cols=71  Identities=14%  Similarity=0.121  Sum_probs=63.2

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeC
Q 030066           90 KFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQ  162 (183)
Q Consensus        90 ~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~  162 (183)
                      +-.+++.+.||+.+..|+.+...|+...-+..  ..++..+..+|.++++++++|++.+.+++...||.|...
T Consensus        12 ~~~~~vi~~LN~~LA~~~~l~~q~~~~hW~v~--G~~F~~lh~~~ee~~~e~~~haD~lAERIl~LGg~P~~t   82 (183)
T 2yw6_A           12 KKASDVADLLQKQLSTYNDLHLTLKHVHWNVV--GPNFIGVHEMIDPQVELVRGYADEVAERIATLGKSPKGT   82 (183)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence            34567999999999999999999996555555  579999999999999999999999999999999999873

>2c2j_A DNA-binding stress response protein; DNA-binding protein, DPS; 2.05A {Deinococcus radiodurans} PDB: 2c6r_A

Probab=97.76  E-value=0.00012  Score=60.74  Aligned_cols=69  Identities=10%  Similarity=0.030  Sum_probs=62.4

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeee
Q 030066           91 FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKL  161 (183)
Q Consensus        91 ~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l  161 (183)
                      -.+++.+.||+++.-|+.+...|+...-++.  ..++..+..+|.++++|+++||+.+.+++...||.+..
T Consensus        44 ~~~~vi~~LN~~LAde~~l~~q~~~~HWnv~--G~~F~~LHe~fee~~~e~~~haD~lAERIl~LGG~P~~  112 (211)
T 2c2j_A           44 DLKKSVQALQNTLTELQALQLQTKQAHWNVS--GTLWYTLHELLQDHYEGISKFADDVAERQLSVGASSDG  112 (211)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            3467999999999999999999996655555  57999999999999999999999999999999999987

>2pyb_A NAPA, neutrophil activating protein; ferritin, DPS, four-helix bundle, metal transport; 2.60A {Borrelia burgdorferi}

Probab=97.72  E-value=0.00016  Score=56.05  Aligned_cols=68  Identities=9%  Similarity=-0.015  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeC
Q 030066           93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQ  162 (183)
Q Consensus        93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~  162 (183)
                      +++.+.||+.+.-|+.+...|+...-+..  ..++..+..+|.+++.++++|+..+.+++...||.|..+
T Consensus         4 ~~vi~~Ln~~La~~~~~~~~~~~~hW~v~--G~~f~~lh~~~ee~~~e~~~~aD~lAERI~~Lgg~P~~~   71 (151)
T 2pyb_A            4 DAIQLKLQELLASLHIFYSNLRGIHWNIK--DTNFFVIHKKTQKLYEYIEKIIDIVAERSRMLGYDSEFR   71 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CSSTHHHHHHHHHHHTTTHHHHHHHHHHHHHHTCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccccccC--CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Confidence            46889999999999999999875544444  458999999999999999999999999999999999874

>2cf7_A DPR; peroxide resistance, DPS-family, ferritin-like, ferroxidase, iron-binding; HET: EPE; 1.50A {Streptococcus suis} PDB: 2ux1_A* 2bw1_A* 1umn_A* 2v15_A* 2xjm_A* 2xjn_A* 2xjo_A* 2xkq_A*

Probab=97.68  E-value=0.00017  Score=56.93  Aligned_cols=70  Identities=16%  Similarity=0.072  Sum_probs=59.5

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeC
Q 030066           91 FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQ  162 (183)
Q Consensus        91 ~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~  162 (183)
                      -.+++.+.||+++..|+.+...|+...-+..  ..++..+..+|.++++++++|++.+.+++...||.|..+
T Consensus        14 ~~~~vi~~LN~~La~~~~l~~~~~~~hW~v~--G~~f~~lh~~~ee~~~e~~~haD~lAERIl~LGg~P~~t   83 (165)
T 2cf7_A           14 SLADSKAVLNQAVADLSVAHSILHQVHWYMR--GRGFMIWHPKMDEYMEEIDGYLAEMSERLITLGGAPFST   83 (165)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCS
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhhhheE--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Confidence            3456889999999999999999865554444  458999999999999999999999999999999999874

>2wlu_A DPS-like peroxide resistance protein; DNA-binding, oxidoreductase; 1.94A {Streptococcus pyogenes} PDB: 2wla_A

Probab=97.64  E-value=0.00034  Score=55.78  Aligned_cols=72  Identities=13%  Similarity=0.097  Sum_probs=62.6

Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeC
Q 030066           89 HKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQ  162 (183)
Q Consensus        89 q~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~  162 (183)
                      ..-.+++.+.||+++.-|+.+...|+...-+..  ..++..+..+|.++++++++||..+.+++...||.|..+
T Consensus        22 ~~~~~~vi~~LN~~LA~~~~l~~k~~~~HWnv~--G~~f~~lh~~~ee~~~e~~~~aD~lAERIl~LGg~P~~t   93 (175)
T 2wlu_A           22 ASKNEKTKAVLNQAVADLSVAASIVHQVHWYMR--GPGFLYLHPKMDELLDSLNANLDEVSERLITIGGAPYST   93 (175)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCS
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence            456688999999999999999999865444444  458999999999999999999999999999999999874

>2xgw_A Peroxide resistance protein; metal binding protein; 2.10A {Streptococcus pyogenes}

Probab=97.61  E-value=0.00044  Score=56.70  Aligned_cols=72  Identities=13%  Similarity=0.097  Sum_probs=62.4

Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeC
Q 030066           89 HKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQ  162 (183)
Q Consensus        89 q~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~  162 (183)
                      .+-.+++.+.||+.+.-|+.+...|....-+..  ..++..+..+|.++++++++||..+.+++...||.|..+
T Consensus        38 ~~~~~~vi~~LN~~LAde~~l~~k~~~~HWnV~--G~~F~~LH~~~ee~~~e~~~haD~lAERIl~LGG~P~~t  109 (199)
T 2xgw_A           38 ASKNEKTKAVLNQAVADLSVAASIVHQVHWYMR--GPGFLYLHPKMDELLDSLNANLDEVSERLITIGGAPYST  109 (199)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCS
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Confidence            356678999999999999999999865444444  458999999999999999999999999999999999874

>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, COG1633: uncharacterized conSer protein; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum} SCOP: a.25.1.8

Probab=97.35  E-value=0.00038  Score=54.23  Aligned_cols=60  Identities=10%  Similarity=0.127  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030066           94 DCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKR  155 (183)
Q Consensus        94 e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~R  155 (183)
                      .+.++|+..|..|..+..+|..+|..++.  ++.+.+++.|+..|++|+.|++.|.++...+
T Consensus         5 ~~~e~L~~Ai~~E~~~~~~Y~~lA~~~~~--~~~~~~k~~f~~LA~eE~~H~~~l~~~~~~~   64 (167)
T 2oh3_A            5 TLAEFLAHAIALETEAAERYVELADMMEA--HNNLDTATVFRDMARFSTLHGDEIKQRSRAL   64 (167)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            37899999999999999999999998884  5789999999999999999999999987664

>3kwo_A Putative bacterioferritin; alpha-helix, bacterial ferritin fold, structural genomics, center for structural genomics of infectious diseases; 1.99A {Campylobacter jejuni} SCOP: a.25.1.0

Probab=97.34  E-value=0.00097  Score=51.67  Aligned_cols=66  Identities=11%  Similarity=0.061  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeee
Q 030066           94 DCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKL  161 (183)
Q Consensus        94 e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l  161 (183)
                      ++.+.||..+.-++.....|+...-+..  ..++..+..+|.++++++++|+..+.+++...||.|..
T Consensus         5 ~~~~~Ln~~LAd~~~l~~k~~~~HWnv~--G~~F~~lH~~~ee~~~~~~~~~D~iAERI~~LGg~P~~   70 (152)
T 3kwo_A            5 SVTKQLLQMQADAHHLWVKFHNYHWNVK--GLQFFSIHEYTEKAYEEMAELFDSCAERVLQLGEKAIT   70 (152)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHBC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhheeeE--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            5788999999999999999997555555  45899999999999999999999999999999999876

>3iq1_A DPS family protein; csgid, SAD, niaid, metal transport, STRU genomics, center for structural genomics of infectious DISE; 1.67A {Vibrio cholerae o1 biovar el tor}

Probab=97.33  E-value=0.0014  Score=51.14  Aligned_cols=67  Identities=10%  Similarity=-0.011  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeee
Q 030066           93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKL  161 (183)
Q Consensus        93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l  161 (183)
                      +++.+.||..+.-++.....|+.. .|.-. ..++..+..+|.++++++++|+..+.+++...||.|..
T Consensus        17 ~~v~~~Ln~~LAd~~~l~~k~~~~-HWnv~-G~~F~~lH~~~ee~~~~~~~~~D~lAERI~~LGg~P~~   83 (159)
T 3iq1_A           17 QKLANALNNLLANYQVFYMNTRGY-HWNIQ-GKEFFELHAKFEEIYTDLQLKIDELAERILTLSARPMH   83 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-HHHCC-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh-heeeE-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            578999999999999999999865 55443 46899999999999999999999999999999999875

>4eve_A Neutrophil-activating protein; dodecamer, four-helix bundle, metal transport; 2.10A {Helicobacter pylori} PDB: 4evd_A 3t9j_A 3ta8_A 4evb_A 4evc_A 1ji4_A

Probab=97.20  E-value=0.0018  Score=51.17  Aligned_cols=67  Identities=12%  Similarity=-0.002  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeee
Q 030066           93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKL  161 (183)
Q Consensus        93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l  161 (183)
                      +++.+.||+.+.-++.....|... .|.-. ..++..+..+|.++++++++|+..+.+++...||.|..
T Consensus        21 ~~v~~~Ln~~LAd~~~l~~k~~~~-HWnv~-G~~F~~lH~~~ee~~~e~~~~~D~lAERI~~LGg~P~~   87 (164)
T 4eve_A           21 MKTFEILKHLQADAIVLFMKVHNF-HWNVK-GTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHHPLV   87 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHH-HHHCC-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-hhhee-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            468999999999999999999865 55443 46899999999999999999999999999999998875

>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1

Probab=97.09  E-value=0.002  Score=50.25  Aligned_cols=58  Identities=17%  Similarity=0.177  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 030066           94 DCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRG  156 (183)
Q Consensus        94 e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RG  156 (183)
                      .+.+.|+..|..|..+...|..++..+.+     +.+++.|...|++|++|++.|.+++..+.
T Consensus        20 ~~~e~L~~A~~~E~~a~~~Y~~~A~~~~~-----~~~~~~f~~lA~~E~~H~~~l~~~~~~l~   77 (175)
T 2fzf_A           20 SLEELLGMAIKAEIGAREFYKSLAEKIKI-----EALKEKINWLAEEEKKHEALLRKLYSQMF   77 (175)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHSCCC-----TTHHHHHHHHHHHTHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            57899999999999999999999998763     78999999999999999999999998763

>4etr_A Putative uncharacterized protein; DUF2383, domain of unknown function, cytoplasmic, unknown FU; 2.25A {Pseudomonas aeruginosa}

Probab=96.83  E-value=0.0068  Score=47.04  Aligned_cols=72  Identities=19%  Similarity=0.150  Sum_probs=59.1

Q ss_pred             cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCC
Q 030066           87 ARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQS  163 (183)
Q Consensus        87 ~Rq~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~  163 (183)
                      .-+.+++++...||+.|..+..+...|-..+--.+     =+.+..+|.+.+.+...|+..|-.++...||.|....
T Consensus         4 ~~~~~~~~~i~~Ln~Li~~~~D~~~gY~~aae~~~-----d~~lk~~f~~~a~~~~~~~~eL~~~i~~lGg~p~~~~   75 (153)
T 4etr_A            4 MNQTNLDDTLDVLNDLLQTSKDGEAGFHACAEDLR-----DPQLKAAMLEQSRDCAAAADELERIVLELGGKPKDST   75 (153)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC----
T ss_pred             hhHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            34567789999999999999999999999777554     4689999999999999999999999999999886544

>3qhb_A Symerythrin, ORF180; four-helix bundle, carboxylate bridged-DIIRON, ferritin-like superfamily, metal transport; 1.20A {Cyanophora paradoxa} PDB: 3qhc_A 3sid_A

Probab=96.54  E-value=0.0053  Score=49.94  Aligned_cols=62  Identities=19%  Similarity=0.245  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 030066           94 DCEAAINEQINVEYNV-SYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGG  157 (183)
Q Consensus        94 e~e~aLNeQIn~EL~A-Sy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG  157 (183)
                      ...+-|+..+..|.+. ...|..++.-.+.+  |++.+|+.|+.-+..|++||.++.+++...++
T Consensus        24 ~T~eNL~~A~~GE~~E~~~~Y~~fA~~A~~E--G~~~IA~~F~~~A~~E~~HA~r~~kll~~l~~   86 (179)
T 3qhb_A           24 NTDANAASSIEVEMYECDCMYPTFAEIARRS--GQPEIGAMFDAIAKEEGMHAQLLTKLYSELEV   86 (179)
T ss_dssp             SHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred             cHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            4578888899999999 78999999999966  99999999999999999999999999865433

>1vjx_A Putative ferritin-like DIIRON-carboxylate protein; structural genomics, joint center for structural genomics, J protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.25.1.1

Probab=95.22  E-value=0.043  Score=42.14  Aligned_cols=57  Identities=19%  Similarity=0.200  Sum_probs=50.1

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030066           91 FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQN  153 (183)
Q Consensus        91 ~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n  153 (183)
                      -+......|...|..|..+...|..+|. ..     -+.+.+.|...|++|+.|.+.|.++..
T Consensus        11 ~~~~~~e~L~~Ai~~E~~~~~~Y~~lA~-~~-----~~~~k~lF~~LA~eE~~H~~~l~~l~~   67 (157)
T 1vjx_A           11 HHMKVSDILTVAIRLEEEGERFYRELSE-HF-----NGEIKKTFLELADQERIHAEIFRKMSD   67 (157)
T ss_dssp             BSCBHHHHHHHHHHHHHHHHHHHHHHTT-SC-----CSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHH-cC-----CHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4556788999999999999999999998 43     478999999999999999999998843

>1zpy_A Hypothetical protein NE0167; structural genomics, MCSG, PSI, protein structure initiative; 2.20A {Nitrosomonas europaea atcc 19718} PDB: 3k6c_A

Probab=95.22  E-value=0.14  Score=37.92  Aligned_cols=56  Identities=25%  Similarity=0.366  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030066           94 DCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKR  155 (183)
Q Consensus        94 e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~R  155 (183)
                      ++..+|.. |--|+.|.+.|.+++.-+++     +.+-+.+.+-++||++|+-.|++++...
T Consensus        19 d~~rai~a-L~~EleAI~~Y~q~A~~t~D-----~evk~vl~~iadEEkeH~g~~l~~Lrr~   74 (95)
T 1zpy_A           19 DMHRAIIS-LREELEAVDLYNQRVNACKD-----KELKAILAHNRDEEKEHAAMLLEWIRRC   74 (95)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            56777774 45899999999999999984     4578889999999999999999998665

>3k6c_A Uncharacterized protein NE0167; structural genomics, MCSG, unknown function protein, PSI, PR structure initiative; 2.20A {Nitrosomonas europaea}

Probab=95.13  E-value=0.15  Score=37.71  Aligned_cols=57  Identities=25%  Similarity=0.360  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 030066           94 DCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRG  156 (183)
Q Consensus        94 e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RG  156 (183)
                      ++..+|. -|..|+.|.+.|.+++.-+++     +.+-+-+..-++||.+|+-.|+.++...+
T Consensus        19 d~~Rai~-sl~~EleAI~~Y~q~a~~~~d-----~~~k~vl~~i~~EEkeH~g~~lelLrr~D   75 (95)
T 3k6c_A           19 DMHRAII-SLREELEAVDLYNQRVNACKD-----KELKAILAHNRDEEKEHAAMLLEWIRRCD   75 (95)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            4778887 466899999999999999884     56788999999999999999999887654

>4a25_A DPS, ferritin DPS family protein; metal binding protein, detoxification process; 2.00A {Kineococcus radiotolerans}

Probab=93.25  E-value=0.61  Score=36.65  Aligned_cols=68  Identities=12%  Similarity=0.044  Sum_probs=54.3

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeee
Q 030066           91 FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVK  160 (183)
Q Consensus        91 ~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~  160 (183)
                      -++++.+.||..+.-.+.....+.. +.|.-. .-.+..+..+|.+++++.++|+..+.+++...||.+.
T Consensus        21 a~~~i~~~Ln~~LAd~~~Ly~k~k~-~HWnV~-G~~F~~lH~~fee~y~e~~~~~D~iAERI~~LGg~P~   88 (169)
T 4a25_A           21 ASSRLNAGLQEVLVDLTALHLQGKQ-AHWNIV-GENWRDLHLQLDTLVEAARGFSDDVAERMRAVGGVPD   88 (169)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHH-HHHHEE-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh-hceeeE-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            3578889999888877765555553 344333 3479999999999999999999999999999999873

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}

Probab=92.95  E-value=0.42  Score=42.27  Aligned_cols=73  Identities=16%  Similarity=0.141  Sum_probs=62.3

Q ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcC
Q 030066           88 RHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSIL  165 (183)
Q Consensus        88 Rq~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~  165 (183)
                      |-.-..++..+||.-+..|..+...|...+.     ++.-+++-+.|++-.++++.|+++|-.|+...||++..+..-
T Consensus       204 ~~~~~~~~v~~ln~a~~ge~~~~~a~e~~a~-----~~~d~~~~~~~~~i~~~~~~h~~~l~~~~~~~g~~~~~~~~~  276 (365)
T 3fse_A          204 GGSTKGDIVRGLNTALGGERYSLEALEKYTE-----KESDVEAKALFQEMITNKQRHIEYLETYLTRLGEKPSLSANI  276 (365)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGSCC-
T ss_pred             cCCchhhhhHHHHHHhhcChhHHHHHHHHHH-----hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCcCcch
Confidence            5555678999999999999999888876665     356789999999999999999999999999999999865543

>4di0_A Rubrerythrin; ssgcid, seattle structural genomics center for infectious DI peroxidase, oxidoreductase; 1.90A {Burkholderia pseudomallei}

Probab=92.57  E-value=0.4  Score=37.04  Aligned_cols=58  Identities=17%  Similarity=0.282  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030066           94 DCEAAINEQINVEYNVS-YVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQN  153 (183)
Q Consensus        94 e~e~aLNeQIn~EL~AS-y~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n  153 (183)
                      .+.+-|...+.-|..+. ..|..++..+..+  |.+.++.+|+..+..|..|++++.+.+.
T Consensus        82 ~T~enL~~A~~GE~~e~~~~Y~~~a~~A~~e--G~~~ia~~f~~~a~~E~~Ha~~~~~~l~  140 (144)
T 4di0_A           82 TSRQNLQSAIAGETHEYTDMYPGMAKTARDE--GFEEIANWFETLAKAERSHANRYTKALD  140 (144)
T ss_dssp             SHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHhHHHHHHHHHHHHHHHHHHC--CcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45777788888999995 6999999999965  9999999999999999999999998775

>1vjx_A Putative ferritin-like DIIRON-carboxylate protein; structural genomics, joint center for structural genomics, J protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.25.1.1

Probab=92.32  E-value=0.84  Score=34.76  Aligned_cols=59  Identities=20%  Similarity=0.237  Sum_probs=52.2

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030066           91 FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNK  154 (183)
Q Consensus        91 ~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~  154 (183)
                      .......+|...|..|..+...|..++..+.+     +..-+.|...+.+|++|...|.+++..
T Consensus        97 ~~~~~~~~l~~ai~~E~~a~~~Y~~~a~~~~d-----~~~k~l~~~la~eE~~H~~~l~~~~~~  155 (157)
T 1vjx_A           97 KDLTLKEVLDIAISVEKDSIILYYELKDGLVN-----SDAQKTVKKIIDQEKEHLRKLLEMKRE  155 (157)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCS-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            44468899999999999999999999999873     678899999999999999999988754

>1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus tokodaii strain 7, FOU bundle, domain swapping, metal binding site plasticity; 1.70A {Sulfolobus tokodaii} SCOP: a.25.1.1

Probab=92.01  E-value=0.67  Score=34.89  Aligned_cols=59  Identities=20%  Similarity=0.291  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030066           93 DDCEAAINEQINVEYNV-SYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQN  153 (183)
Q Consensus        93 ~e~e~aLNeQIn~EL~A-Sy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n  153 (183)
                      ..+.+.|..-+..|..+ .-.|..++..+...  +.+..+.+|+..+++|.+|+..+-+.+.
T Consensus        79 ~~~~e~L~~al~~E~~~~~~~y~~~~~~A~~e--gd~~~~~~f~~i~~~E~~H~~~~~~~l~  138 (144)
T 1j30_A           79 GTLEQMIESAIAGETYEWTQMYPGFAKVAREE--GFPEVAEWFETLARAEKSHAEKFQNVLK  138 (144)
T ss_dssp             SSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc--CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45788899999999999 79999999999964  8999999999999999999999887764

>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1

Probab=90.84  E-value=1.7  Score=33.37  Aligned_cols=58  Identities=14%  Similarity=0.087  Sum_probs=51.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030066           92 TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNK  154 (183)
Q Consensus        92 s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~  154 (183)
                      ...+..+|...|..|..+...|..++....+     +...+.|...+.+|.+|...|-+++..
T Consensus       103 ~~~~~~~L~~ai~~E~~a~~~Y~~~a~~~~d-----~~~r~l~~~ia~eE~~H~~~l~~~l~~  160 (175)
T 2fzf_A          103 VQDIIDLIRWAMKAEEIAAEFYLKLEEMVKE-----EEKKRLMRYLADMERGHYYTLRAEYEL  160 (175)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCS-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHhhCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3568899999999999999999999998762     789999999999999999998886654

>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str}

Probab=90.51  E-value=1.8  Score=31.42  Aligned_cols=64  Identities=16%  Similarity=0.154  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCe
Q 030066           93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGK  158 (183)
Q Consensus        93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~  158 (183)
                      ....+.|...+..|-.+.-.|..+...++..  +=++...+|.....+|.+|+..|-.++.+-++.
T Consensus        84 ~~~~e~l~~~l~~E~~~~~~~~~~~~~a~~~--~D~~t~~~l~~~~~eee~h~~~l~~~l~~~~~~  147 (149)
T 2qqy_A           84 EDVREMLEYARQSEYETIKRYEKRKEQAANL--NMTELVVKLEDMIADETNHMEELDRLLNDKAMV  147 (149)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            4677889999999999999999999998743  568899999999999999999999888665554

>2e0z_A Virus-like particle; bacteriophage, HK97; 3.60A {Pyrococcus furiosus}

Probab=88.19  E-value=0.093  Score=46.46  Aligned_cols=60  Identities=17%  Similarity=0.279  Sum_probs=0.0

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030066           91 FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKR  155 (183)
Q Consensus        91 ~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~R  155 (183)
                      -.+++..+|...|+.|+.+...|..++..+++.     ..-+.|.+.++||++|+..|.+.+...
T Consensus        16 ~~~el~~air~ai~~E~eAi~~Y~q~A~~~~d~-----~~K~vl~~ia~EEk~H~~~f~~ll~~l   75 (345)
T 2e0z_A           16 TKEELMEILRLAIIAELDAINLYEQMARYSEDE-----NVRKILLDVAREEKAHVGEFMALLLNL   75 (345)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345778899999999999999999999998854     466889999999999999998876544

>3qhb_A Symerythrin, ORF180; four-helix bundle, carboxylate bridged-DIIRON, ferritin-like superfamily, metal transport; 1.20A {Cyanophora paradoxa} PDB: 3qhc_A 3sid_A

Probab=88.05  E-value=2  Score=34.68  Aligned_cols=58  Identities=17%  Similarity=0.149  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030066           94 DCEAAINEQINVEYNV-SYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQN  153 (183)
Q Consensus        94 e~e~aLNeQIn~EL~A-Sy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n  153 (183)
                      .++..|...|..|..- .-.|-.++.-+...  |.+..+.+|+.-+..|..|++++-+.+.
T Consensus       115 N~~~~L~~A~~GE~~E~~~mYp~fA~~A~eE--G~~eiA~~F~~ia~~Ek~H~~ry~~ll~  173 (179)
T 3qhb_A          115 GLRRALETALEVETIESQKTYPAFAKLAAEQ--GNMEVATAFEAIVKSETKHANWVKRALE  173 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3666788899999984 67899999999966  9999999999999999999999887664

>3hl1_A Ferritin like protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Caulobacter vibrioides}

Probab=87.57  E-value=6.2  Score=34.61  Aligned_cols=69  Identities=13%  Similarity=0.074  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCc
Q 030066           93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSI  164 (183)
Q Consensus        93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I  164 (183)
                      +++.++|+..|.+|+...=.||..+.--...|   ...+.-.+.-+.|||-|..-.-+-++.-||++.+..-
T Consensus         9 ~~L~~~Lq~Ai~lE~stIp~YL~a~ySi~~~n---~~~~~~i~~V~~eEMlHl~l~aNll~AiGg~p~~~~P   77 (317)
T 3hl1_A            9 PRLYQHFQGAIDLELWTIPYYLTVLYSIKDPT---TVPYRLIQAAVYQEMLHAQLVSNIANAYGYSPTLSAP   77 (317)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBSCTT---SHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCCCC
Confidence            47899999999999999999996555555432   4688899999999999999999999999999988654

>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A*

Probab=86.66  E-value=6.7  Score=29.05  Aligned_cols=59  Identities=14%  Similarity=0.173  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030066           93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQN  153 (183)
Q Consensus        93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n  153 (183)
                      ..+.+.|...+..|..+...|..+...++..  +-++.+.||.....+|.+|+..|-+++.
T Consensus        83 ~~~~e~l~~~l~~E~~~~~~~~~~~~~A~~~--~D~~t~~~l~~~~~eee~h~~~l~~~l~  141 (161)
T 3uoi_A           83 QTLREQFEADLAIEYDVLNRLKPGIVMCREK--QDTTSAVLLEKIVADEEEHIDYLETQLE  141 (161)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5678889999999999999999999888853  6789999999999999999998887654

>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A*

Probab=85.85  E-value=6.5  Score=29.63  Aligned_cols=60  Identities=17%  Similarity=0.199  Sum_probs=51.7

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 030066           91 FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQ  152 (183)
Q Consensus        91 ~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~  152 (183)
                      ....+.+.+..-+..|..+.-.|..+...|..  .+-+..+.||+.-..+|.+|+..|-+++
T Consensus        79 ~~~~~~e~l~~~l~~E~~~~~~~~~~~~~a~~--~~D~~t~~~l~~il~eEeeH~~~l~~~L  138 (159)
T 4am5_A           79 IGQTVKEVLESDLAAEREARALYQEGAAYAAS--VGDFPSKNLFEELMGDEEHHIDFLETQL  138 (159)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567888999999999999999999999985  4788999999999999999998775544

>3r2k_A Bacterioferritin, BFR; bacterial ferritin, iron binding, iron storage, iron homeost iron release, iron mobilization; 1.55A {Pseudomonas aeruginosa} SCOP: a.25.1.0 PDB: 3r2h_A 3r2l_A 3r2m_A 3r2o_A 3r2r_A 3r2s_A

Probab=85.32  E-value=5.9  Score=29.20  Aligned_cols=61  Identities=13%  Similarity=0.079  Sum_probs=51.9

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHH-HHHHHHHHHHHHH
Q 030066           91 FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEE-EREHAEKLMEYQN  153 (183)
Q Consensus        91 ~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeE-EreHAekLikY~n  153 (183)
                      ....+.+.|...+..|..+.-.|..+...++..  +=++.+.||.....+ |.+|+..|-+++.
T Consensus        78 ~~~~~~e~l~~~l~~E~~~~~~~~~~~~~a~~~--~D~~t~~~l~~~~~e~ee~h~~~l~~~l~  139 (154)
T 3r2k_A           78 PGTTVPEMLEADLKLERHVRAALAKGIALCEQH--KDFVSRDILKAQLADTEEDHAYWLEQQLG  139 (154)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444678888899999999999999999999853  678999999999999 9999998776553

>2y3q_A Bacterioferritin; metal binding protein, redox; HET: HEM; 1.55A {Escherichia coli} PDB: 1bfr_A* 1bcf_A* 2htn_A* 2vxi_A* 3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A* 3e2c_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A*

Probab=85.21  E-value=9  Score=28.00  Aligned_cols=59  Identities=15%  Similarity=0.146  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030066           93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQN  153 (183)
Q Consensus        93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n  153 (183)
                      ....+.|...+..|-.+.-.|..+...++..  +-+....||.....+|.+|+..|-.++.
T Consensus        81 ~~~~e~l~~~l~~E~~~~~~y~~~~~~a~~~--~D~~t~~~l~~~~~ee~~h~~~l~~~l~  139 (158)
T 2y3q_A           81 EDVEEMLRSDLALELDGAKNLREAIGYADSV--HDYVSRDMMIEILRDEEGHIDWLETELD  139 (158)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677889999999999999999999998743  5688999999999999999998877653

>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM Fe-coproporphyrin III cofactor, iron storage-electron complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans} SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A*

Probab=84.91  E-value=8  Score=29.35  Aligned_cols=58  Identities=14%  Similarity=0.124  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 030066           93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQ  152 (183)
Q Consensus        93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~  152 (183)
                      ..+.+.|...+..|-.+.-.|..+...+...  +=+....+|.....+|.+|+..|-.++
T Consensus        86 ~~~~e~l~~al~~E~~~~~~y~~l~~~a~~~--~D~~t~~~l~~~~~eEe~h~~~l~~~l  143 (179)
T 1nfv_A           86 QAVPVIYESDADQEDATIEAYSQFLKVCKEQ--GDIVTARLFERIIEEEQAHLTYYENIG  143 (179)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4578899999999999999999999998743  568899999999999999996665543

>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, COG1633: uncharacterized conSer protein; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum} SCOP: a.25.1.8

Probab=84.77  E-value=6  Score=30.05  Aligned_cols=57  Identities=18%  Similarity=0.066  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030066           93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNK  154 (183)
Q Consensus        93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~  154 (183)
                      ..+..+|.-.|..|..+...|..++....+     +...+.|...+.+|.+|...|.+.+..
T Consensus        92 ~~~~~~l~~A~~~E~~a~~fY~~~a~~~~d-----~~~k~~~~~la~eE~~H~~~l~~~~~~  148 (167)
T 2oh3_A           92 MTPYHALRYARDNEIRGMEYYKEAAANSAD-----PEVKRLGADFAAEEAEHVVALDKWIEK  148 (167)
T ss_dssp             GSHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357889999999999999999999887652     678899999999999999999887643

>3qb9_A Bacterioferritin, BFR; cytosol, structural genomics, TB structural genomics consort TBSGC, metal binding protein; HET: HEM; 2.11A {Mycobacterium tuberculosis} PDB: 2wtl_A* 3bkn_A*

Probab=84.66  E-value=9.3  Score=28.77  Aligned_cols=60  Identities=13%  Similarity=0.158  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030066           93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNK  154 (183)
Q Consensus        93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~  154 (183)
                      ..+.+.|...+..|-.+.-.|..+...+...  +-++...||.....+|..|+..|.+++..
T Consensus        83 ~~~~e~l~~al~~E~~~~~~y~~l~~~a~~~--~D~~t~~~l~~~l~eEe~h~~~l~~~l~~  142 (174)
T 3qb9_A           83 QTLREQFEADLAIEYDVLNRLKPGIVMCREK--QDTTSAVLLEKIVADEEEHIDYLETQLEL  142 (174)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678889999999999999999999988753  67889999999999999999999876653

>2itb_A TRNA-(MS(2)IO(6)A)-hydroxylase, putative; putative ATTH, structural genomics, joint center for structu genomics, JCSG; 2.05A {Pseudomonas putida} SCOP: a.25.1.7

Probab=84.25  E-value=5.1  Score=33.22  Aligned_cols=62  Identities=19%  Similarity=0.323  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCe
Q 030066           93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGK  158 (183)
Q Consensus        93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~  158 (183)
                      .+.+..|.++-+-|..|+-+=++|=+-|-    ..+++..-+-..+.||++|-++.++.+.+||-.
T Consensus        26 ~nl~~iL~DHA~CE~KAA~tAm~Li~rYp----~~~~Lv~~m~~LarEEL~HFeqVl~im~~Rgi~   87 (206)
T 2itb_A           26 ADQETLLIDHKNCEFKAASTALSLIAKYN----THLDLINMMSRLAREELVHHEQVLRLMKRRGVP   87 (206)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHTT----TCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            45677899999999999999887755543    478899999999999999999999999999953

>1o9i_A Pseudocatalase; oxidoreductase, hexamer, dimanganese catalase, metalloenzyme, preoxidase; HET: MES; 1.33A {Lactobacillus plantarum} SCOP: a.25.1.3 PDB: 1jkv_A 1jku_A

Probab=83.13  E-value=2.9  Score=35.76  Aligned_cols=63  Identities=10%  Similarity=-0.055  Sum_probs=51.7

Q ss_pred             CHHHHHHHHHHH---HHHHHHHHHHHHHHHhcccCCccchhH-HHHHHHHHHHHHHHHHHHHHHHHhcCCee
Q 030066           92 TDDCEAAINEQI---NVEYNVSYVYHAMFAYFDRDNVALKGL-AKFFKESSEEEREHAEKLMEYQNKRGGKV  159 (183)
Q Consensus        92 s~e~e~aLNeQI---n~EL~ASy~YlsMAayFd~dnv~L~Gf-AkFF~~qSeEEreHAekLikY~n~RGG~V  159 (183)
                      ++...++|.+|+   +-|+.++.+|+.-+.-|..     ++. ...+..-+-||+.|.+.+-..+++.++..
T Consensus        18 dp~~A~~L~e~~GG~~GElsAamqYl~Q~~~~~~-----~~~y~dLL~dIatEEl~HlEmva~~I~~L~~ga   84 (266)
T 1o9i_A           18 DPIMARRLQESLGGQWGETTGMMSFLSQGWASTG-----AEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDA   84 (266)
T ss_dssp             CHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHCCS-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHhccHHHHHHHHHHHHcCCC
Confidence            455666677765   5799999999999999883     356 88999999999999999999888887643

>1jgc_A Bacterioferritin, BFR; iron storage protein, metal binding protein; HET: HEM; 2.60A {Rhodobacter capsulatus} SCOP: a.25.1.1

Probab=82.73  E-value=11  Score=27.63  Aligned_cols=59  Identities=12%  Similarity=0.096  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030066           93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQN  153 (183)
Q Consensus        93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n  153 (183)
                      ....+.|...+..|-.+.-.|..+...++..  +-++.+.+|.....+|.+|+..|-.++.
T Consensus        81 ~~~~e~l~~~l~~E~~~~~~~~~~~~~a~~~--~D~~t~~~l~~~~~ee~~h~~~l~~~l~  139 (161)
T 1jgc_A           81 EGPRETLECDLAGEHDALKLYREARDYCAEV--GDIVSKNIFESLITDEEGHVDFLETQIS  139 (161)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4577889999999999999999999998753  6788999999999999999988877653

>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxida activity, heme, metal binding protein; HET: HEM; 2.80A {Rhodobacter sphaeroides} SCOP: a.25.1.1

Probab=82.23  E-value=9.5  Score=28.27  Aligned_cols=59  Identities=14%  Similarity=0.168  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030066           93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQN  153 (183)
Q Consensus        93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n  153 (183)
                      ....+.|...+..|..+.-.|..+...++.  .+=++.+.+|.....+|.+|+..|.+.+.
T Consensus        81 ~~~~e~l~~~l~~E~~~~~~~~~~~~~A~~--~~D~~t~~~l~~~~~eEe~h~~~l~~~l~  139 (161)
T 3gvy_A           81 QTLRETLDADLAAEHDARTLYIEARDHCEK--VRDYPSKMLFEELIADEEGHIDYLETQID  139 (161)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TTCHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567888999999999999999999999884  37889999999999999999988877543

>2fkz_A Bacterioferritin; ferroxidase, DIIRON site, iron T metal binding protein; HET: HEM; 2.00A {Azotobacter vinelandii} SCOP: a.25.1.1 PDB: 2fl0_A* 1sof_A*

Probab=80.43  E-value=14  Score=26.69  Aligned_cols=58  Identities=14%  Similarity=0.137  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 030066           93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQ  152 (183)
Q Consensus        93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~  152 (183)
                      ....+.|...+..|-.+.-.|..+...++..  +-++.+.||.....+|.+|+..|-.++
T Consensus        81 ~~~~e~l~~~l~~E~~~~~~~~~~~~~a~~~--~D~~t~~~l~~~~~eee~h~~~l~~~l  138 (155)
T 2fkz_A           81 EHTKEMLECDLKLEQAGLPDLKAAIAYCESV--GDYASRELLEDILESEEDHIDWLETQL  138 (155)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3578899999999999999999999999753  678899999999999999987776554

>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A

Probab=80.31  E-value=5.3  Score=32.28  Aligned_cols=59  Identities=22%  Similarity=0.326  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030066           94 DCEAAINEQINVE-YNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNK  154 (183)
Q Consensus        94 e~e~aLNeQIn~E-L~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~  154 (183)
                      .+.+.|..-+..| +...-.|-.++......  +....+.+|+.-+.+|.+|++++-+.+..
T Consensus       103 st~enL~~a~~gE~~E~t~my~~~a~~A~eE--gd~~~a~~f~~i~~~E~~H~~~~~~ll~~  162 (202)
T 1yuz_A          103 SCDLNLISGANGEIYETSDMYPAFIRKAQEE--GNSKAVHVFTRAKLAESVHAERYLAAYND  162 (202)
T ss_dssp             CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHhHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5778888888899 88889999999999865  89999999999999999999988877744

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	183
d1z6om1	191	a.25.1.1 (M:1-191) (Apo)ferritin {Cabbage looper(T	9e-36
d1z6oa1	200	a.25.1.1 (A:13-212) (Apo)ferritin {Cabbage looper(	1e-32
d1rcda_	171	a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesb	7e-31
d1r03a_	171	a.25.1.1 (A:) (Apo)ferritin {Human (Homo sapiens),	5e-30
d1bg7a_	173	a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesb	2e-29
d1lb3a_	179	a.25.1.1 (A:) (Apo)ferritin {Mouse (Mus musculus)	4e-29
d1euma_	161	a.25.1.1 (A:) Non-hem ferritin {Escherichia coli,	7e-25
d1s3qa1	162	a.25.1.1 (A:3-164) Non-hem ferritin {Archaeon Arch	9e-25
d1vlga_	164	a.25.1.1 (A:) Non-hem ferritin {Thermotoga maritim	2e-24
d1krqa_	165	a.25.1.1 (A:) Non-hem ferritin {Campylobacter jeju	1e-23
d2htna1	158	a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1	6e-13
d1jgca_	160	a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rh	1e-10
d1nf4a_	169	a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {De	2e-09
d2fkza1	154	a.25.1.1 (A:1-154) Bacterioferritin (cytochrome b1	4e-08

>d1z6om1 a.25.1.1 (M:1-191) (Apo)ferritin {Cabbage looper(Trichoplusia ni), H chain [TaxId: 7111]} Length = 191

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: (Apo)ferritin
species: Cabbage looper(Trichoplusia ni), H chain [TaxId: 7111]

 Score =  121 bits (305), Expect = 9e-36
 Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 3/103 (2%)

Query: 79  PTVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESS 138
             +P+  +  H+    C  ++ +QI +E   S  Y AM A+F +D V   G A+ F +++
Sbjct: 8   VQIPKDWITMHR---SCRNSMRQQIQMEVGASLQYLAMGAHFSKDVVNRPGFAQLFFDAA 64

Query: 139 EEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALY 181
            EEREHA KL+EY   RG      S L+ +     +     + 
Sbjct: 65  SEEREHAMKLIEYLLMRGELTNDVSSLLQVRPPTRSSWKGGVE 107

>d1z6oa1 a.25.1.1 (A:13-212) (Apo)ferritin {Cabbage looper(Trichoplusia ni), L chain [TaxId: 7111]} Length = 200

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: (Apo)ferritin
species: Cabbage looper(Trichoplusia ni), L chain [TaxId: 7111]

 Score =  113 bits (284), Expect = 1e-32
 Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 1/96 (1%)

Query: 87  ARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAE 146
             +    +    +     +    SY Y    AYF+       G +K FK+ S+E      
Sbjct: 17  GEYGSHGNVATELQAYAKLHLERSYDYLLSAAYFNNYQTNRAGFSKLFKKLSDEAWSKTI 76

Query: 147 KLMEYQNKRGGKVKLQSILMPLSEF-DHAEKGDALY 181
            ++++  KRG K+         +E  ++  +   L 
Sbjct: 77  DIIKHVTKRGDKMNFDQHSTMKTERKNYTAENHELE 112

>d1rcda_ a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 8400]} Length = 171

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: (Apo)ferritin
species: Bullfrog (Rana catesbeiana) [TaxId: 8400]

 Score =  108 bits (270), Expect = 7e-31
 Identities = 49/97 (50%), Positives = 68/97 (70%), Gaps = 4/97 (4%)

Query: 85  SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREH 144
           S  R  F  DCEA +N  +N++++ SYVY +M +YF+RD+VAL   AKFF+E SEEE+EH
Sbjct: 1   SQVRQNFHQDCEAGLNRTVNLKFHSSYVYLSMASYFNRDDVALSNFAKFFRERSEEEKEH 60

Query: 145 AEKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALY 181
           AEKL+EYQN+RGG+V LQS+  P    +  +  + L 
Sbjct: 61  AEKLIEYQNQRGGRVFLQSVEKP----ERDDWANGLE 93

>d1r03a_ a.25.1.1 (A:) (Apo)ferritin {Human (Homo sapiens), mitocondial isoform [TaxId: 9606]} Length = 171

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: (Apo)ferritin
species: Human (Homo sapiens), mitocondial isoform [TaxId: 9606]

 Score =  106 bits (265), Expect = 5e-30
 Identities = 45/87 (51%), Positives = 56/87 (64%)

Query: 85  SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREH 144
           S  R  F  D EAAIN QIN+E   SYVY +M  YF RD+VAL   +++F   S EE EH
Sbjct: 1   SRVRQNFHPDSEAAINRQINLELYASYVYLSMAYYFSRDDVALNNFSRYFLHQSREETEH 60

Query: 145 AEKLMEYQNKRGGKVKLQSILMPLSEF 171
           AEKLM  QN+RGG+++LQ I  P  + 
Sbjct: 61  AEKLMRLQNQRGGRIRLQDIKKPEQDD 87

>d1bg7a_ a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 8400]} Length = 173

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: (Apo)ferritin
species: Bullfrog (Rana catesbeiana) [TaxId: 8400]

 Score =  104 bits (261), Expect = 2e-29
 Identities = 52/97 (53%), Positives = 64/97 (65%), Gaps = 4/97 (4%)

Query: 85  SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREH 144
           S  R  F  DCEAAIN  +N+E   SY Y +M  YFDRD++AL  +AKFFKE S EEREH
Sbjct: 2   SQVRQNFHRDCEAAINRMVNMELYASYTYLSMAFYFDRDDIALHNVAKFFKEQSHEEREH 61

Query: 145 AEKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALY 181
           AEKLM+ QNKRGG++ LQ +  P    +  E G+ L 
Sbjct: 62  AEKLMKDQNKRGGRIVLQDVQKP----ERDEWGNTLE 94

>d1lb3a_ a.25.1.1 (A:) (Apo)ferritin {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: (Apo)ferritin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  103 bits (259), Expect = 4e-29
 Identities = 38/97 (39%), Positives = 58/97 (59%), Gaps = 4/97 (4%)

Query: 85  SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREH 144
           S  R  ++ + EAA+N  +N+    SY Y ++  +FDRD+VAL+G+  FF+E +EE+RE 
Sbjct: 1   SQIRQNYSTEVEAAVNRLVNLHLRASYTYLSLGFFFDRDDVALEGVGHFFRELAEEKREG 60

Query: 145 AEKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALY 181
           AE+L+E+QN RGG+   Q +  P       E G    
Sbjct: 61  AERLLEFQNDRGGRALFQDVQKP----SQDEWGKTQE 93

>d1euma_ a.25.1.1 (A:) Non-hem ferritin {Escherichia coli, FtnA [TaxId: 562]} Length = 161

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Non-hem ferritin
species: Escherichia coli, FtnA [TaxId: 562]

 Score = 92.3 bits (229), Expect = 7e-25
 Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 2/83 (2%)

Query: 94  DCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQN 153
           +    +NEQ+N+E   S +Y  M A+        +G A F +  ++EE  H ++L +Y  
Sbjct: 4   EMIEKLNEQMNLELYSSLLYQQMSAWCSYHT--FEGAAAFLRRHAQEEMTHMQRLFDYLT 61

Query: 154 KRGGKVKLQSILMPLSEFDHAEK 176
             G   ++ ++  P +E+   ++
Sbjct: 62  DTGNLPRINTVESPFAEYSSLDE 84

>d1s3qa1 a.25.1.1 (A:3-164) Non-hem ferritin {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 162

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Non-hem ferritin
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 92.3 bits (229), Expect = 9e-25
 Identities = 30/85 (35%), Positives = 52/85 (61%), Gaps = 2/85 (2%)

Query: 92  TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEY 151
           ++    A+N QIN E   +Y+Y +M +YFD  ++ LKG + + +   +EE  HA K+ ++
Sbjct: 3   SEKMVEALNRQINAEIYSAYLYLSMASYFD--SIGLKGFSNWMRVQWQEELMHAMKMFDF 60

Query: 152 QNKRGGKVKLQSILMPLSEFDHAEK 176
            ++RGG+VKL ++  P SE+D    
Sbjct: 61  VSERGGRVKLYAVEEPPSEWDSPLA 85

>d1vlga_ a.25.1.1 (A:) Non-hem ferritin {Thermotoga maritima [TaxId: 2336]} Length = 164

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Non-hem ferritin
species: Thermotoga maritima [TaxId: 2336]

 Score = 91.6 bits (227), Expect = 2e-24
 Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 2/87 (2%)

Query: 90  KFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLM 149
             ++    A+N+Q+N E   SY+Y +M  YFD +    KG A + K+ ++EE  HA K  
Sbjct: 3   VISEKVRKALNDQLNREIYSSYLYLSMATYFDAEG--FKGFAHWMKKQAQEELTHAMKFY 60

Query: 150 EYQNKRGGKVKLQSILMPLSEFDHAEK 176
           EY  +RGG+V+L++I  P S ++  + 
Sbjct: 61  EYIYERGGRVELEAIEKPPSNWNGIKD 87

>d1krqa_ a.25.1.1 (A:) Non-hem ferritin {Campylobacter jejuni [TaxId: 197]} Length = 165

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Non-hem ferritin
species: Campylobacter jejuni [TaxId: 197]

 Score = 89.3 bits (221), Expect = 1e-23
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 92  TDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEY 151
           + +    +NEQIN E   + +Y +M ++   ++  L G   F    + EE +HA+KL+ Y
Sbjct: 3   SKEVVKLLNEQINKEMYAANLYLSMSSWCYENS--LDGAGAFLFAHASEESDHAKKLITY 60

Query: 152 QNKRGGKVKLQSILMPLSEFDHAEK 176
            N+    V+LQ +  P   F     
Sbjct: 61  LNETDSHVELQEVKQPEQNFKSLLD 85

>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1) {Escherichia coli [TaxId: 562]} Length = 158

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Bacterioferritin (cytochrome b1)
species: Escherichia coli [TaxId: 562]

 Score = 61.2 bits (148), Expect = 6e-13
 Identities = 19/94 (20%), Positives = 29/94 (30%), Gaps = 2/94 (2%)

Query: 90  KFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLM 149
           K        +N+ +  E      Y      F   N  LK L       S +E +HA++ +
Sbjct: 2   KGDTKVINYLNKLLGNELVAINQYFLHARMFK--NWGLKRLNDVEYHESIDEMKHADRYI 59

Query: 150 EYQNKRGGKVKLQSILMPLSEFDHAEKGDALYDE 183
           E      G   LQ +       D  E   +    
Sbjct: 60  ERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLAL 93

>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter capsulatus [TaxId: 1061]} Length = 160

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Bacterioferritin (cytochrome b1)
species: Rhodobacter capsulatus [TaxId: 1061]

 Score = 54.7 bits (131), Expect = 1e-10
 Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 2/78 (2%)

Query: 98  AINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGG 157
            +N  +  E      Y   F   +  +  L  +AK  +E S EE  HA+K++       G
Sbjct: 10  FLNAALRSELTAISQYWVHFRLQE--DWGLAKMAKKSREESIEEMGHADKIIARILFLEG 67

Query: 158 KVKLQSILMPLSEFDHAE 175
              LQ +          E
Sbjct: 68  HPNLQKLDPLRIGEGPRE 85

>d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Desulfovibrio desulfuricans [TaxId: 876]} Length = 169

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Bacterioferritin (cytochrome b1)
species: Desulfovibrio desulfuricans [TaxId: 876]

 Score = 51.6 bits (123), Expect = 2e-09
 Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 2/86 (2%)

Query: 98  AINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGG 157
            +N+   +E +  + Y         D++    LA   K  + +E  HAE   E   + GG
Sbjct: 12  VLNKARAMELHAIHQYMNQHYSL--DDMDYGELAANMKLIAIDEMRHAENFAERIKELGG 69

Query: 158 KVKLQSILMPLSEFDHAEKGDALYDE 183
           +   Q     ++        ++  D+
Sbjct: 70  EPTTQKEGKVVTGQAVPVIYESDADQ 95

>d2fkza1 a.25.1.1 (A:1-154) Bacterioferritin (cytochrome b1) {Azotobacter vinelandii [TaxId: 354]} Length = 154

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Bacterioferritin (cytochrome b1)
species: Azotobacter vinelandii [TaxId: 354]

 Score = 47.8 bits (113), Expect = 4e-08
 Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 2/86 (2%)

Query: 98  AINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGG 157
            +N+ +  E      Y      +  ++  L+ L K     S +E +HA+KL++      G
Sbjct: 10  HLNKILGNELIAINQYFLHARMY--EDWGLEKLGKHEYHESIDEMKHADKLIKRILFLEG 67

Query: 158 KVKLQSILMPLSEFDHAEKGDALYDE 183
              LQ +   L      E  +     
Sbjct: 68  LPNLQELGKLLIGEHTKEMLECDLKL 93

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	183
d1bg7a_	173	(Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId:	99.96
d1rcda_	171	(Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId:	99.96
d1r03a_	171	(Apo)ferritin {Human (Homo sapiens), mitocondial i	99.96
d1lb3a_	179	(Apo)ferritin {Mouse (Mus musculus) [TaxId: 10090]	99.96
d1z6oa1	200	(Apo)ferritin {Cabbage looper(Trichoplusia ni), L	99.96
d1z6om1	191	(Apo)ferritin {Cabbage looper(Trichoplusia ni), H	99.94
d1vlga_	164	Non-hem ferritin {Thermotoga maritima [TaxId: 2336	99.93
d1krqa_	165	Non-hem ferritin {Campylobacter jejuni [TaxId: 197	99.93
d1s3qa1	162	Non-hem ferritin {Archaeon Archaeoglobus fulgidus	99.93
d1euma_	161	Non-hem ferritin {Escherichia coli, FtnA [TaxId: 5	99.92
d2fkza1	154	Bacterioferritin (cytochrome b1) {Azotobacter vine	99.69
d1jgca_	160	Bacterioferritin (cytochrome b1) {Rhodobacter caps	99.68
d2htna1	158	Bacterioferritin (cytochrome b1) {Escherichia coli	99.65
d1nf4a_	169	Bacterioferritin (cytochrome b1) {Desulfovibrio de	99.57
d1yuza1	135	Nigerythrin, N-terminal domain {Desulfovibrio vulg	99.53
d1j30a_	141	Hypothetical rubrerythrin {Archaeon Sulfolobus tok	99.43
d1lkoa1	146	Rubrerythrin, N-terminal domain {Desulfovibrio vul	99.29
d1nnqa1	133	Rubrerythrin, N-terminal domain {Archaeon Pyrococc	98.6
d2oh3a1	152	Uncharacterized protein AMB4284 homologue {Magneto	97.99
d2fzfa1	158	Hypothetical protein PF1190 {Archaeon Pyrococcus f	97.73
d1o9ra_	162	Dodecameric ferritin homolog {Agrobacterium tumefa	96.94
d2ib0a1	142	Hypothetical protein Rv2844 {Mycobacterium tubercu	96.89
d1umna_	151	Dodecameric ferritin homolog {Streptococcus suis [	96.35
d1jiga_	146	Dodecameric ferritin homolog {Bacillus anthracis,	96.24
d1ji5a_	142	Dodecameric ferritin homolog {Bacillus anthracis,	96.24
d1vjxa_	149	Hypothetical protein TM1526 {Thermotoga maritima [	96.17
d1tjoa_	180	Dodecameric ferritin homolog {Archaeon Halobacteri	96.07
d1zpya1	91	Hypothetical protein NE0167 {Nitrosomonas europaea	95.82
d1dpsa_	159	Dodecameric ferritin homolog {Escherichia coli, Dp	95.68
d2fjca1	151	Dodecameric ferritin homolog {Treponema pallidum,	95.54
d1n1qa_	149	Dodecameric ferritin homolog {Bacillus brevis, Dps	95.28
d1ji4a_	144	Dodecameric ferritin homolog {Helicobacter pylori,	94.29
d2bk6a1	150	Dodecameric ferritin homolog {Listeria innocua [Ta	92.42
d1yuza1	135	Nigerythrin, N-terminal domain {Desulfovibrio vulg	91.75
d1lkoa1	146	Rubrerythrin, N-terminal domain {Desulfovibrio vul	91.29
d2yw6a1	141	Dodecameric ferritin homolog {Mycobacterium smegma	90.36
d1vjxa_	149	Hypothetical protein TM1526 {Thermotoga maritima [	90.03
d2fkza1	154	Bacterioferritin (cytochrome b1) {Azotobacter vine	87.9
d2fzfa1	158	Hypothetical protein PF1190 {Archaeon Pyrococcus f	86.59
d2oh3a1	152	Uncharacterized protein AMB4284 homologue {Magneto	86.24
d1j30a_	141	Hypothetical rubrerythrin {Archaeon Sulfolobus tok	84.64
d1nf4a_	169	Bacterioferritin (cytochrome b1) {Desulfovibrio de	83.07
d2itba1	199	Putative tRNA-(Ms(2)io(6)a)-hydroxylase PP2188 {Ps	82.59
d1nnqa1	133	Rubrerythrin, N-terminal domain {Archaeon Pyrococc	81.47

>d1bg7a_ a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 8400]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: (Apo)ferritin
species: Bullfrog (Rana catesbeiana) [TaxId: 8400]

Probab=99.96  E-value=1.8e-30  Score=206.94  Aligned_cols=91  Identities=55%  Similarity=0.853  Sum_probs=87.5

Q ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCc
Q 030066           85 SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSI  164 (183)
Q Consensus        85 S~~Rq~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I  164 (183)
                      |++||||+++|+++||+|||+|++|||+|++||+||++++++|+|||+||+++|+|||+||++|++||++|||+|.+++|
T Consensus         2 ~~~r~n~~~e~e~aLN~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~EE~~HA~~l~~yl~~rgg~~~~~~i   81 (173)
T d1bg7a_           2 SQVRQNFHRDCEAAINRMVNMELYASYTYLSMAFYFDRDDIALHNVAKFFKEQSHEEREHAEKLMKDQNKRGGRIVLQDV   81 (173)
T ss_dssp             CTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCC
T ss_pred             CcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCc-ccCCcc
Q 030066          165 LMPLS-EFDHAE  175 (183)
Q Consensus       165 ~~P~~-ef~~~e  175 (183)
                      ++|+. +|.++.
T Consensus        82 ~~~~~~~~~s~~   93 (173)
T d1bg7a_          82 QKPERDEWGNTL   93 (173)
T ss_dssp             CCCSCSCCCSHH
T ss_pred             CCCCCCCCCCHh
Confidence            99765 788764

>d1rcda_ a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 8400]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: (Apo)ferritin
species: Bullfrog (Rana catesbeiana) [TaxId: 8400]

Probab=99.96  E-value=2.5e-30  Score=205.70  Aligned_cols=91  Identities=53%  Similarity=0.909  Sum_probs=87.2

Q ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCc
Q 030066           85 SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSI  164 (183)
Q Consensus        85 S~~Rq~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I  164 (183)
                      |++||||+++|+++||+|||+|++|+|+|++||+||++++++|+||++||+.+|+|||+||++|++|+++|||+|.+++|
T Consensus         1 ~~~r~n~~~e~~~aLN~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~EE~~Ha~~l~~yi~~rgg~~~~~~i   80 (171)
T d1rcda_           1 SQVRQNFHQDCEAGLNRTVNLKFHSSYVYLSMASYFNRDDVALSNFAKFFRERSEEEKEHAEKLIEYQNQRGGRVFLQSV   80 (171)
T ss_dssp             CTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeccc
Confidence            68999999999999999999999999999999999999899999999999999999999999999999999999999999


Q ss_pred             CCCCc-ccCCcc
Q 030066          165 LMPLS-EFDHAE  175 (183)
Q Consensus       165 ~~P~~-ef~~~e  175 (183)
                      .+|+. +|.++.
T Consensus        81 ~~~~~~~~~s~~   92 (171)
T d1rcda_          81 EKPERDDWANGL   92 (171)
T ss_dssp             CCCSCSCCCSHH
T ss_pred             CCCCCccccchh
Confidence            88775 887764

>d1r03a_ a.25.1.1 (A:) (Apo)ferritin {Human (Homo sapiens), mitocondial isoform [TaxId: 9606]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: (Apo)ferritin
species: Human (Homo sapiens), mitocondial isoform [TaxId: 9606]

Probab=99.96  E-value=1.7e-29  Score=200.58  Aligned_cols=91  Identities=49%  Similarity=0.784  Sum_probs=87.0

Q ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCc
Q 030066           85 SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSI  164 (183)
Q Consensus        85 S~~Rq~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I  164 (183)
                      |.+||||+++|+++||+|||.|+.|+|+|++||.||++++++|+|||+||+.+|+|||+||++|++||++|||+|++++|
T Consensus         1 ~~~r~n~~~e~e~aLN~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~a~EE~~Ha~~l~~yi~~rgg~~~~~~i   80 (171)
T d1r03a_           1 SRVRQNFHPDSEAAINRQINLELYASYVYLSMAYYFSRDDVALNNFSRYFLHQSREETEHAEKLMRLQNQRGGRIRLQDI   80 (171)
T ss_dssp             CTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCC
T ss_pred             CCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCc
Confidence            57899999999999999999999999999999999999899999999999999999999999999999999999999999


Q ss_pred             CCCCc-ccCCcc
Q 030066          165 LMPLS-EFDHAE  175 (183)
Q Consensus       165 ~~P~~-ef~~~e  175 (183)
                      ++|.. +|.++.
T Consensus        81 ~~~~~~~~~s~~   92 (171)
T d1r03a_          81 KKPEQDDWESGL   92 (171)
T ss_dssp             CCCSCSCCCSHH
T ss_pred             cCCCCccccchh
Confidence            99987 587764

>d1lb3a_ a.25.1.1 (A:) (Apo)ferritin {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: (Apo)ferritin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.9e-29  Score=202.16  Aligned_cols=91  Identities=41%  Similarity=0.755  Sum_probs=87.2

Q ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCc
Q 030066           85 SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSI  164 (183)
Q Consensus        85 S~~Rq~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I  164 (183)
                      |++||||+++|+++||+|||.||+|+|+|++||+||++++++++|||+||+++|+|||+||++|++||++|||+|++++|
T Consensus         1 ~~~r~n~~~e~e~aLN~qi~~El~as~~Yl~ma~~~~~~~~~l~g~a~~f~~~s~EE~~HA~~l~~yi~~rgg~~~~~~i   80 (179)
T d1lb3a_           1 SQIRQNYSTEVEAAVNRLVNLHLRASYTYLSLGFFFDRDDVALEGVGHFFRELAEEKREGAERLLEFQNDRGGRALFQDV   80 (179)
T ss_dssp             CTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCC
T ss_pred             CCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeecCC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCc-ccCCcc
Q 030066          165 LMPLS-EFDHAE  175 (183)
Q Consensus       165 ~~P~~-ef~~~e  175 (183)
                      .+|+. +|+++.
T Consensus        81 ~~~~~~~~~~~~   92 (179)
T d1lb3a_          81 QKPSQDEWGKTQ   92 (179)
T ss_dssp             CCCSCSCCCSHH
T ss_pred             CCCCCcccCChh
Confidence            98775 788764

>d1z6oa1 a.25.1.1 (A:13-212) (Apo)ferritin {Cabbage looper(Trichoplusia ni), L chain [TaxId: 7111]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: (Apo)ferritin
species: Cabbage looper(Trichoplusia ni), L chain [TaxId: 7111]

Probab=99.96  E-value=2e-29  Score=206.15  Aligned_cols=102  Identities=19%  Similarity=0.276  Sum_probs=92.6

Q ss_pred             CCCCCcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 030066           78 VPTVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGG  157 (183)
Q Consensus        78 v~~~~~~S~~Rq~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG  157 (183)
                      +|.|. .+..|.+++++|+.+||+|||+||.+||+|++||+||++++++|+||++||+++|+|||+||+||++||++|||
T Consensus         9 ~~~c~-~~~~~~~~~~~~e~~ln~~in~el~aSy~Ylama~~f~~~~~~l~GfakfF~~~S~EE~eHA~kl~~Yl~~RGg   87 (200)
T d1z6oa1           9 LPRCN-AVYGEYGSHGNVATELQAYAKLHLERSYDYLLSAAYFNNYQTNRAGFSKLFKKLSDEAWSKTIDIIKHVTKRGD   87 (200)
T ss_dssp             CTTCS-SCCTTTTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCcc-hhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            56665 35779999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeCCcCCCCcccCCcc-ccccC
Q 030066          158 KVKLQSILMPLSEFDHAE-KGDAL  180 (183)
Q Consensus       158 ~V~l~~I~~P~~ef~~~e-kgd~l  180 (183)
                      +|.++.|.+|+.+|++.. .+|.|
T Consensus        88 ~v~~~~i~~p~~~~~~~~~~~~~l  111 (200)
T d1z6oa1          88 KMNFDQHSTMKTERKNYTAENHEL  111 (200)
T ss_dssp             CCCTTCCCCSCCCCCCCCSCCCHH
T ss_pred             ceecCcccCCCCccccccccCcHH
Confidence            999999999999887553 34443

>d1z6om1 a.25.1.1 (M:1-191) (Apo)ferritin {Cabbage looper(Trichoplusia ni), H chain [TaxId: 7111]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: (Apo)ferritin
species: Cabbage looper(Trichoplusia ni), H chain [TaxId: 7111]

Probab=99.94  E-value=3.8e-27  Score=191.56  Aligned_cols=91  Identities=33%  Similarity=0.426  Sum_probs=80.9

Q ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeee----
Q 030066           85 SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVK----  160 (183)
Q Consensus        85 S~~Rq~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~----  160 (183)
                      ++--.+++++|+++||+|||+|+.|||+|++||+||++++++|+||++||+++|+|||+||++|++||++|||++.    
T Consensus        11 ~~~~~~~~~~~e~aLn~qIn~El~aSy~Yl~ma~~f~~~~~~l~Gfa~ff~~~s~EE~eHa~kl~~Yl~~RGg~v~~~~~   90 (191)
T d1z6om1          11 PKDWITMHRSCRNSMRQQIQMEVGASLQYLAMGAHFSKDVVNRPGFAQLFFDAASEEREHAMKLIEYLLMRGELTNDVSS   90 (191)
T ss_dssp             CCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCGG
T ss_pred             CcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccc
Confidence            3445668899999999999999999999999999999999999999999999999999999999999999999863    


Q ss_pred             -eCCcCCCCcccCCcc
Q 030066          161 -LQSILMPLSEFDHAE  175 (183)
Q Consensus       161 -l~~I~~P~~ef~~~e  175 (183)
                       ++.+..|..+|+++.
T Consensus        91 ~~~~~~~~~~~~~s~l  106 (191)
T d1z6om1          91 LLQVRPPTRSSWKGGV  106 (191)
T ss_dssp             GCCCCCCSCCCCSSHH
T ss_pred             ccCCCCCCccccCCHH
Confidence             444555567998865

>d1vlga_ a.25.1.1 (A:) Non-hem ferritin {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Non-hem ferritin
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=2.1e-26  Score=181.10  Aligned_cols=85  Identities=36%  Similarity=0.633  Sum_probs=81.4

Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCC
Q 030066           89 HKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPL  168 (183)
Q Consensus        89 q~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~  168 (183)
                      ++++++|+++||+|||+|++|+|+|++||+||+  +++++|||+||+.+|+||++||++|++|+++|||+|.+++|++|.
T Consensus         2 ~~~s~~v~~~LN~qi~~El~as~~Yl~ma~~~~--~~~l~g~a~~f~~~s~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~   79 (164)
T d1vlga_           2 MVISEKVRKALNDQLNREIYSSYLYLSMATYFD--AEGFKGFAHWMKKQAQEELTHAMKFYEYIYERGGRVELEAIEKPP   79 (164)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCC
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCC
Confidence            368999999999999999999999999999997  579999999999999999999999999999999999999999999


Q ss_pred             cccCCcc
Q 030066          169 SEFDHAE  175 (183)
Q Consensus       169 ~ef~~~e  175 (183)
                      .+|.++.
T Consensus        80 ~~~~~~~   86 (164)
T d1vlga_          80 SNWNGIK   86 (164)
T ss_dssp             CCCSSHH
T ss_pred             CCCCCHH
Confidence            9998865

>d1krqa_ a.25.1.1 (A:) Non-hem ferritin {Campylobacter jejuni [TaxId: 197]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Non-hem ferritin
species: Campylobacter jejuni [TaxId: 197]

Probab=99.93  E-value=3.3e-26  Score=180.57  Aligned_cols=84  Identities=29%  Similarity=0.447  Sum_probs=80.6

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCCc
Q 030066           90 KFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLS  169 (183)
Q Consensus        90 ~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~~  169 (183)
                      +++++|+++||+|||.|++|+|+|++||+||++  ++++|||+||+.+|+|||+||++|++||++|||.|.+++|++|..
T Consensus         1 M~s~~v~~~LN~qi~~El~as~~Yl~~a~~~~~--~~l~g~a~~f~~~s~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~~   78 (165)
T d1krqa_           1 MLSKEVVKLLNEQINKEMYAANLYLSMSSWCYE--NSLDGAGAFLFAHASEESDHAKKLITYLNETDSHVELQEVKQPEQ   78 (165)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCCCCCCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCccCccccccc
Confidence            578999999999999999999999999999985  489999999999999999999999999999999999999999999


Q ss_pred             ccCCcc
Q 030066          170 EFDHAE  175 (183)
Q Consensus       170 ef~~~e  175 (183)
                      +|+++.
T Consensus        79 ~~~~~~   84 (165)
T d1krqa_          79 NFKSLL   84 (165)
T ss_dssp             CCSCHH
T ss_pred             cCCCHH
Confidence            998765

>d1s3qa1 a.25.1.1 (A:3-164) Non-hem ferritin {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Non-hem ferritin
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.93  E-value=4.2e-26  Score=178.77  Aligned_cols=83  Identities=36%  Similarity=0.649  Sum_probs=80.3

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCCcc
Q 030066           91 FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSE  170 (183)
Q Consensus        91 ~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~~e  170 (183)
                      ++++++++||+|||+|++|+|+|++||.||+  +++|+||++||+++|+|||+||++|++|+++|||+|.+++|++|..+
T Consensus         2 ~s~~~~~~Ln~qi~~El~as~~Yl~~a~~~~--~~~l~g~a~~f~~~s~eE~~Ha~~l~~yl~~rgg~~~~~~i~~p~~~   79 (162)
T d1s3qa1           2 ISEKMVEALNRQINAEIYSAYLYLSMASYFD--SIGLKGFSNWMRVQWQEELMHAMKMFDFVSERGGRVKLYAVEEPPSE   79 (162)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCCCC
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCcc
Confidence            6899999999999999999999999999997  67999999999999999999999999999999999999999999999


Q ss_pred             cCCcc
Q 030066          171 FDHAE  175 (183)
Q Consensus       171 f~~~e  175 (183)
                      |+++.
T Consensus        80 ~~~~~   84 (162)
T d1s3qa1          80 WDSPL   84 (162)
T ss_dssp             CSSHH
T ss_pred             CCCHH
Confidence            99875

>d1euma_ a.25.1.1 (A:) Non-hem ferritin {Escherichia coli, FtnA [TaxId: 562]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Non-hem ferritin
species: Escherichia coli, FtnA [TaxId: 562]

Probab=99.92  E-value=1.1e-25  Score=176.46  Aligned_cols=83  Identities=24%  Similarity=0.508  Sum_probs=79.7

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCCcc
Q 030066           91 FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSE  170 (183)
Q Consensus        91 ~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~~e  170 (183)
                      ++++|+++||+|||.|++|+|+|++||+||++  .+++|||+||+.+|.|||+||++|++||++|||.|.+++|++|..+
T Consensus         1 l~~~~~~~LN~qi~~El~as~~Yl~~a~~~~~--~~l~g~a~~f~~~a~EE~~HA~~l~~yl~~rgg~~~~~~i~~p~~~   78 (161)
T d1euma_           1 LKPEMIEKLNEQMNLELYSSLLYQQMSAWCSY--HTFEGAAAFLRRHAQEEMTHMQRLFDYLTDTGNLPRINTVESPFAE   78 (161)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCCCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCcc
Confidence            58999999999999999999999999999996  4899999999999999999999999999999999999999999999


Q ss_pred             cCCcc
Q 030066          171 FDHAE  175 (183)
Q Consensus       171 f~~~e  175 (183)
                      |.+++
T Consensus        79 ~~~~~   83 (161)
T d1euma_          79 YSSLD   83 (161)
T ss_dssp             CSCHH
T ss_pred             CCCHH
Confidence            98864

>d2fkza1 a.25.1.1 (A:1-154) Bacterioferritin (cytochrome b1) {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Bacterioferritin (cytochrome b1)
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.69  E-value=3.8e-17  Score=124.81  Aligned_cols=82  Identities=21%  Similarity=0.120  Sum_probs=74.8

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCCc
Q 030066           90 KFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLS  169 (183)
Q Consensus        90 ~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~~  169 (183)
                      +.++++.++||++|+.|++|+++|+.+|.||+  +.+++++++||+++|.||++||.+|++|++.+||.|.+..+..| .
T Consensus         2 ~~~~~ii~~Ln~~l~~E~~A~~~Y~~~a~~~~--~~~~~~la~~f~~~a~eE~~Ha~~l~~~i~~lGg~p~~~~~~~~-~   78 (154)
T d2fkza1           2 KGDKIVIQHLNKILGNELIAINQYFLHARMYE--DWGLEKLGKHEYHESIDEMKHADKLIKRILFLEGLPNLQELGKL-L   78 (154)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCC-C
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccc-c
Confidence            46799999999999999999999999999999  56999999999999999999999999999999999999988644 3


Q ss_pred             ccCCc
Q 030066          170 EFDHA  174 (183)
Q Consensus       170 ef~~~  174 (183)
                      .|+++
T Consensus        79 ~~~~~   83 (154)
T d2fkza1          79 IGEHT   83 (154)
T ss_dssp             CCSSH
T ss_pred             cCCCH
Confidence            55554

>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter capsulatus [TaxId: 1061]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Bacterioferritin (cytochrome b1)
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.68  E-value=6.8e-17  Score=124.93  Aligned_cols=84  Identities=21%  Similarity=0.141  Sum_probs=76.1

Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCC
Q 030066           89 HKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPL  168 (183)
Q Consensus        89 q~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~  168 (183)
                      ++.++++.++||+||+.|+.++++|+.++.||+  +.+++|++.||++++.||++||.+|++|++.+||.|.+..+..| 
T Consensus         1 m~~~~kvi~~LN~~l~~E~~a~~~Y~~~a~~~~--~~~~~~l~~~f~~~a~eE~~Ha~~l~eri~~lGg~p~~~~~~~~-   77 (160)
T d1jgca_           1 MKGDAKVIEFLNAALRSELTAISQYWVHFRLQE--DWGLAKMAKKSREESIEEMGHADKIIARILFLEGHPNLQKLDPL-   77 (160)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCC-
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccccccc-
Confidence            356799999999999999999999999999998  56999999999999999999999999999999999999888754 


Q ss_pred             cccCCcc
Q 030066          169 SEFDHAE  175 (183)
Q Consensus       169 ~ef~~~e  175 (183)
                      ..|.+++
T Consensus        78 ~~~~~~~   84 (160)
T d1jgca_          78 RIGEGPR   84 (160)
T ss_dssp             CCCSSHH
T ss_pred             cCcCCHH
Confidence            4566654

>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1) {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Bacterioferritin (cytochrome b1)
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=2e-16  Score=121.16  Aligned_cols=83  Identities=20%  Similarity=0.092  Sum_probs=75.2

Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCC
Q 030066           89 HKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPL  168 (183)
Q Consensus        89 q~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~  168 (183)
                      ++.++++.++||++|+.|++|+++|+.++.||+  +++++++++||+++|.||++||++|++|++.+||.|.+..+..|.
T Consensus         1 m~~~~~ii~~Ln~~l~~E~~A~~~Y~~~a~~~~--~~~~~~la~~f~~~a~eE~~Ha~~l~eri~~lGg~p~~~~~~~~~   78 (158)
T d2htna1           1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFK--NWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLN   78 (158)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccc
Confidence            356799999999999999999999999999998  569999999999999999999999999999999999999887664


Q ss_pred             cccCCc
Q 030066          169 SEFDHA  174 (183)
Q Consensus       169 ~ef~~~  174 (183)
                       .|.++
T Consensus        79 -~~~~~   83 (158)
T d2htna1          79 -IGEDV   83 (158)
T ss_dssp             -CCSSH
T ss_pred             -CCCCH
Confidence             34443

>d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Desulfovibrio desulfuricans [TaxId: 876]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Bacterioferritin (cytochrome b1)
species: Desulfovibrio desulfuricans [TaxId: 876]

Probab=99.57  E-value=2.2e-15  Score=117.01  Aligned_cols=80  Identities=20%  Similarity=0.180  Sum_probs=74.2

Q ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCC
Q 030066           88 RHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMP  167 (183)
Q Consensus        88 Rq~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P  167 (183)
                      |+.-.+++.+.||++++.|+.++++|+.++.+|+  +++++|+++||+++|.||++||++|++|++.+||.|.+..+..|
T Consensus         2 ~~~~~~~ii~~Ln~~l~~E~~a~~~Y~~~a~~~~--~~~~~~l~~~f~~~a~eE~~Ha~~l~eri~~lGg~p~~~~~~~~   79 (169)
T d1nf4a_           2 REDRKAKVIEVLNKARAMELHAIHQYMNQHYSLD--DMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKV   79 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSSCC
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCcccccccc
Confidence            4556789999999999999999999999999998  57999999999999999999999999999999999999988877


Q ss_pred             Cc
Q 030066          168 LS  169 (183)
Q Consensus       168 ~~  169 (183)
                      ..
T Consensus        80 ~~   81 (169)
T d1nf4a_          80 VT   81 (169)
T ss_dssp             CC
T ss_pred             cC
Confidence            53

>d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Nigerythrin, N-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=99.53  E-value=8e-15  Score=109.83  Aligned_cols=74  Identities=12%  Similarity=0.105  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCCc
Q 030066           94 DCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLS  169 (183)
Q Consensus        94 e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~~  169 (183)
                      ++.+.||++|+.|+.|+++|+.+|.+|+  ++|++++|++|+.+|.||++||++|++|++++||.|.+..+..|..
T Consensus         6 ~t~e~L~~a~~~E~~A~~~Yl~~A~~~~--~~g~~~ia~~f~~~A~eE~~HA~~l~~~l~~lgg~p~~~~~~~~~~   79 (135)
T d1yuza1           6 STLENLKAAIAGETGAHAKYTAFAKAAR--EQGYEQIARLFEATAAAELIHIGLEYALVAEMEPGYEKPTVAAPSA   79 (135)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCCC--CCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh--HCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCcC
Confidence            4678899999999999999999999999  4599999999999999999999999999999999999998877753

>d1j30a_ a.25.1.1 (A:) Hypothetical rubrerythrin {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Hypothetical rubrerythrin
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=99.43  E-value=1.7e-13  Score=102.80  Aligned_cols=73  Identities=12%  Similarity=0.087  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCC
Q 030066           93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMP  167 (183)
Q Consensus        93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P  167 (183)
                      +++++.||++++.|++|.+.|+.||.||+.  .|++++|++|+++|.+|+.||+++++|++.+||.+.....+.+
T Consensus         5 t~t~~~L~~a~~~E~~A~~~Y~~~a~~a~~--~g~~~iA~~f~~~A~eE~~HA~~~~~~i~~lg~~p~~~~~~~~   77 (141)
T d1j30a_           5 TKTAENLKQGFIGESMANRRYLYFAKRADE--EGYPEIAGLLRSIAEGETAHAFGHLDFIRQGGLTDPATDKPIG   77 (141)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCTTTSCBCS
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCcC
Confidence            578899999999999999999999999995  5999999999999999999999999999999999876554433

>d1lkoa1 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Rubrerythrin, N-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=99.29  E-value=1.8e-12  Score=97.96  Aligned_cols=77  Identities=17%  Similarity=0.198  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeCCcCCCCcccC
Q 030066           93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFD  172 (183)
Q Consensus        93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~~I~~P~~ef~  172 (183)
                      +++++-|+..+..|+.|+++|+.+|.||++  +|+++++++|+.+|.||+.||++|++++++.||.+...  ..|...++
T Consensus         6 t~t~~~L~~a~~~E~~A~~~Y~~~A~~a~~--~g~~~ia~~f~~~A~eE~~HA~~l~~~l~~lg~~p~~~--~~~~~~~~   81 (146)
T d1lkoa1           6 SRTEKNILTAFAGESQARNRYNYFGGQAKK--DGFVQISDIFAETADQEREHAKRLFKFLEGGDLEIVAA--FPAGIIAD   81 (146)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCCCCCC--CCCCCCCC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcCCC--CCccccCC
Confidence            578999999999999999999999999994  59999999999999999999999999999999988653  33444444


Q ss_pred             C
Q 030066          173 H  173 (183)
Q Consensus       173 ~  173 (183)
                      +
T Consensus        82 ~   82 (146)
T d1lkoa1          82 T   82 (146)
T ss_dssp             H
T ss_pred             c
Confidence            3

>d1nnqa1 a.25.1.1 (A:2-134) Rubrerythrin, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Rubrerythrin, N-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.60  E-value=3.7e-08  Score=74.00  Aligned_cols=65  Identities=17%  Similarity=0.128  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCee
Q 030066           93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKV  159 (183)
Q Consensus        93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V  159 (183)
                      +.+++.||+.+..|+.+..+|+.+|..++  ++|++.+|+.|++.|.+|+.||+.+++++...|+.+
T Consensus         5 ~~t~~~L~~A~~gE~~A~~~Y~~~A~~a~--~~G~~~lA~~f~~~A~eE~~HA~~~~~~i~~l~~~~   69 (133)
T d1nnqa1           5 TMTKKFLEEAFAGESMAHMRYLIFAEKAE--QEGFPNIAKLFRAIAYAEFVHAKNHFIALGKLGKTP   69 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence            46788999999999999999999999999  579999999999999999999999999997766543

>d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284 homologue {Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: AMB4284-like
domain: Uncharacterized protein AMB4284 homologue
species: Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]

Probab=97.99  E-value=9.5e-06  Score=59.03  Aligned_cols=65  Identities=9%  Similarity=0.082  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeee
Q 030066           95 CEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKL  161 (183)
Q Consensus        95 ~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l  161 (183)
                      ++++||..|.+|..+...|..++..+..  .+.+.++++|+..+++|++|+..|.+.+...++....
T Consensus         3 ~~e~L~~Ai~~E~~a~~~Y~~~a~~~~~--~~~~~~~~~f~~la~eE~~H~~~l~~~~~~~~~~~~~   67 (152)
T d2oh3a1           3 LAEFLAHAIALETEAAERYVELADMMEA--HNNLDTATVFRDMARFSTLHGDEIKQRSRALELPKLM   67 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence            5789999999999999999999999994  4899999999999999999999999999988886543

>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Hypothetical protein PF1190
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.73  E-value=0.00011  Score=53.20  Aligned_cols=62  Identities=16%  Similarity=0.156  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeee
Q 030066           95 CEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKL  161 (183)
Q Consensus        95 ~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l  161 (183)
                      ++++|+..|..|..+...|..++..+.+     +++.+.|...+++|.+|+..|.+++..+||.+..
T Consensus        12 l~e~l~~ai~~E~~a~~~Y~~~a~~~~~-----~~~~~~f~~la~eE~~H~~~~~~~~~~~~~~~~~   73 (158)
T d2fzfa1          12 LEELLGMAIKAEIGAREFYKSLAEKIKI-----EALKEKINWLAEEEKKHEALLRKLYSQMFPGKEV   73 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCCC-----TTHHHHHHHHHHHTHHHHHHHHHHHHHHSTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCC-----hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence            5789999999999999999999998763     6789999999999999999999999999998754

>d1o9ra_ a.25.1.1 (A:) Dodecameric ferritin homolog {Agrobacterium tumefaciens, Dps [TaxId: 358]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Dodecameric ferritin homolog
species: Agrobacterium tumefaciens, Dps [TaxId: 358]

Probab=96.94  E-value=0.0029  Score=47.30  Aligned_cols=80  Identities=9%  Similarity=0.119  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeee--------eCCc
Q 030066           93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVK--------LQSI  164 (183)
Q Consensus        93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~--------l~~I  164 (183)
                      .++.+.||+.+.-++.....|+..--+..  ..++..+..+|.++++++++|++.+.+++...||.+.        +..|
T Consensus        16 ~~~~~~Ln~~La~~~~l~~k~~~~HWnv~--G~~F~~lH~~~~~~~~~~~~~~D~iAERi~~LG~~p~~~~~~~~~~s~i   93 (162)
T d1o9ra_          16 STVIGILNESLASVIDLALVTKQAHWNLK--GPQFIAVHELLDTFRTQLDNHGDTIAERVVQLGGTALGSLQAVSSTTKL   93 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCB--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhcee--CCChHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCCCCcCHHHHHHhccC
Confidence            46677777777777766666664333333  4579999999999999999999999999999999993        5567


Q ss_pred             CCCCcccCCc
Q 030066          165 LMPLSEFDHA  174 (183)
Q Consensus       165 ~~P~~ef~~~  174 (183)
                      +.+..++.++
T Consensus        94 ~~~~~~~~~~  103 (162)
T d1o9ra_          94 KAYPTDIYKI  103 (162)
T ss_dssp             CCCCSSCCBH
T ss_pred             cCCCCCCCCH
Confidence            6666555443

>d2ib0a1 a.25.1.9 (A:17-158) Hypothetical protein Rv2844 {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Rv2844-like
domain: Hypothetical protein Rv2844
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.89  E-value=0.0022  Score=46.79  Aligned_cols=61  Identities=18%  Similarity=0.288  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeC
Q 030066           96 EAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQ  162 (183)
Q Consensus        96 e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l~  162 (183)
                      .++||..|..|+.+.|.|-..+.+++.      +....|....++|+.|++.|.+.+..+||.+...
T Consensus         7 ~~~L~~AL~~E~aaiy~Y~~a~~~~~~------~~~~~~~~~~~~e~~H~~~L~~~i~~lgg~p~~~   67 (142)
T d2ib0a1           7 NAALCDALAVEHATIYGYGIVSALSPP------GVNFLVADALKQHRHRRDDVIVMLSARGVTAPIA   67 (142)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCG------GGHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcc
Confidence            578999999999999999877777663      4678888999999999999999999999987653

>d1umna_ a.25.1.1 (A:) Dodecameric ferritin homolog {Streptococcus suis [TaxId: 1307]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Dodecameric ferritin homolog
species: Streptococcus suis [TaxId: 1307]

Probab=96.35  E-value=0.012  Score=43.06  Aligned_cols=67  Identities=16%  Similarity=0.109  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeee
Q 030066           93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKL  161 (183)
Q Consensus        93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l  161 (183)
                      .++.+.||..+.-.......|+..--+..  ..++..+..+|.++++++++|++.+.+++...||.+..
T Consensus         2 a~~~~~Ln~~la~~~~l~~~~~~~HWnv~--G~~F~~lH~~f~~~~~e~~~~~D~lAERi~~lGg~p~~   68 (151)
T d1umna_           2 ADSKAVLNQAVADLSVAHSILHQVHWYMR--GRGFMIWHPKMDEYMEEIDGYLDEMSERLITLGGAPFS   68 (151)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhhhccee--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence            35778899988888888888875433333  46899999999999999999999999999999998843

>d1jiga_ a.25.1.1 (A:) Dodecameric ferritin homolog {Bacillus anthracis, Dlp-2 [TaxId: 1392]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Dodecameric ferritin homolog
species: Bacillus anthracis, Dlp-2 [TaxId: 1392]

Probab=96.24  E-value=0.015  Score=42.15  Aligned_cols=66  Identities=18%  Similarity=0.108  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeee
Q 030066           93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVK  160 (183)
Q Consensus        93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~  160 (183)
                      .++.+.||.++.-.+.....|+..--...  ..++..+..+|.+++++.++|+..+.+++...||.+.
T Consensus         4 ~~~~~~Ln~~lA~~~~l~~k~~~~HWnv~--G~~F~~lH~~~~e~~~~~~~~~D~iAERi~~lgg~p~   69 (146)
T d1jiga_           4 TNVVEVLNKQVANWNVLYVKLHNYHWYVT--GPHFFTLHEKFEEFYNEAGTYIDELAERILALEGKPL   69 (146)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhee--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCc
Confidence            57889999999988888888875544444  3579999999999999999999999999999999984

>d1ji5a_ a.25.1.1 (A:) Dodecameric ferritin homolog {Bacillus anthracis, Dlp-1 [TaxId: 1392]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Dodecameric ferritin homolog
species: Bacillus anthracis, Dlp-1 [TaxId: 1392]

Probab=96.24  E-value=0.014  Score=42.32  Aligned_cols=74  Identities=19%  Similarity=0.188  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCee--------eeCCcCC
Q 030066           95 CEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKV--------KLQSILM  166 (183)
Q Consensus        95 ~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V--------~l~~I~~  166 (183)
                      +.+.||+++.-.......|... .|--. ..++..+..+|.+++++.++|+..+.+++...||.+        ....|+.
T Consensus         2 ~~e~Ln~~lA~~~~l~~k~~~~-HWnv~-G~~F~~~H~~~~e~y~~~~~~~D~lAERi~~Lgg~p~~~~~~~~~~s~i~e   79 (142)
T d1ji5a_           2 VIEVLNKQVADWSVLFTKLHNF-HWYVK-GPQFFTLHEKFEELYTESATHIDEIAERILAIGGKPVATMKEYLEISSIQE   79 (142)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-HHHCC-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-hcccc-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCcCHHHHHhhCcCcc
Confidence            5678998888877777777754 33333 458999999999999999999999999999999998        4555554


Q ss_pred             CCcc
Q 030066          167 PLSE  170 (183)
Q Consensus       167 P~~e  170 (183)
                      +...
T Consensus        80 ~~~~   83 (142)
T d1ji5a_          80 AAYG   83 (142)
T ss_dssp             CCTT
T ss_pred             cCCC
Confidence            4433

>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Hypothetical protein TM1526
species: Thermotoga maritima [TaxId: 2336]

Probab=96.17  E-value=0.0056  Score=43.71  Aligned_cols=59  Identities=20%  Similarity=0.274  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCee
Q 030066           95 CEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKV  159 (183)
Q Consensus        95 ~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V  159 (183)
                      +.+.|+..|..|..+...|..++.-++      +.+...|...+.+|++|++.|.+.+...|+..
T Consensus         7 ~~e~l~~Ai~~E~~~~~~Y~~~a~~~~------~~~~~~f~~la~eE~~H~~~l~~~~~~~~~~~   65 (149)
T d1vjxa_           7 VSDILTVAIRLEEEGERFYRELSEHFN------GEIKKTFLELADQERIHAEIFRKMSDQENWDE   65 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCC------SHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            467889999999999999998876653      34889999999999999999999999988754

>d1tjoa_ a.25.1.1 (A:) Dodecameric ferritin homolog {Archaeon Halobacterium salinarum [TaxId: 2242]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Dodecameric ferritin homolog
species: Archaeon Halobacterium salinarum [TaxId: 2242]

Probab=96.07  E-value=0.02  Score=43.35  Aligned_cols=68  Identities=21%  Similarity=0.300  Sum_probs=56.2

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeee
Q 030066           91 FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVK  160 (183)
Q Consensus        91 ~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~  160 (183)
                      -.+++.+.||..+.-++.....|+..--...  ..++..+..+|.+++++..+|++.+.+++...||.+.
T Consensus        25 ~~~~~i~~Ln~~LA~~~~l~~k~~~~HWnv~--G~~F~~lH~~fee~y~~~~~~~D~iAERI~~LGg~p~   92 (180)
T d1tjoa_          25 RAEQCVDALNADLANVYVLYHQLKKHHWNVE--GAEFRDLHLFLGEAAETAEEVADELAERVQALGGVPH   92 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhheeee--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence            3457788899888888877777775544444  3579999999999999999999999999999999983

>d1zpya1 a.25.1.5 (A:4-94) Hypothetical protein NE0167 {Nitrosomonas europaea [TaxId: 915]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: half-ferritin
domain: Hypothetical protein NE0167
species: Nitrosomonas europaea [TaxId: 915]

Probab=95.82  E-value=0.033  Score=39.25  Aligned_cols=57  Identities=25%  Similarity=0.318  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 030066           94 DCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRG  156 (183)
Q Consensus        94 e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RG  156 (183)
                      ++..+|...| .|+.|.+.|.+++..+++     +.+-+.|..-++||.+|+-.++.++..++
T Consensus        16 d~~Rai~sli-~EleAI~~Y~q~a~~t~d-----~~~k~Vl~hia~EEkeH~g~~LelLrr~D   72 (91)
T d1zpya1          16 DMHRAIISLR-EELEAVDLYNQRVNACKD-----KELKAILAHNRDEEKEHAAMLLEWIRRCD   72 (91)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            4566676544 899999999999999984     56889999999999999999999987654

>d1dpsa_ a.25.1.1 (A:) Dodecameric ferritin homolog {Escherichia coli, Dps [TaxId: 562]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Dodecameric ferritin homolog
species: Escherichia coli, Dps [TaxId: 562]

Probab=95.68  E-value=0.031  Score=41.46  Aligned_cols=65  Identities=11%  Similarity=0.156  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCee
Q 030066           93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKV  159 (183)
Q Consensus        93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V  159 (183)
                      +++.++||+.+.-+......|+. +.| +-...++..+..+|.++++++++|+.++.+++...||.+
T Consensus        19 ~~~~~~L~~~la~~~~L~~~~~~-~HW-nv~G~~F~~lH~~fee~y~e~~~~~D~iAERI~~Lgg~p   83 (159)
T d1dpsa_          19 KATVELLNRQVIQFIDLSLITKQ-AHW-NMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVA   83 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-HHH-TCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-hhc-ceeCCCHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            45667777777666655555553 222 323457889999999999999999999999999999998

>d2fjca1 a.25.1.1 (A:27-177) Dodecameric ferritin homolog {Treponema pallidum, TpF1 [TaxId: 160]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Dodecameric ferritin homolog
species: Treponema pallidum, TpF1 [TaxId: 160]

Probab=95.54  E-value=0.043  Score=39.88  Aligned_cols=67  Identities=9%  Similarity=0.038  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeee
Q 030066           93 DDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKL  161 (183)
Q Consensus        93 ~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l  161 (183)
                      ..+.+.||+.+.-.+.....|+..--+..  ..++..+..+|.+++++.++|++.+.+++...||.+..
T Consensus         7 ~~~~~~Ln~~lA~~~~l~~k~~~~HWnv~--G~~F~~lH~~f~~~y~~~~~~~D~iAERi~~Lgg~p~~   73 (151)
T d2fjca1           7 AAICEQLRQHVADLGVLYIKLHNYHWHIY--GIEFKQVHELLEEYYVSVTEAFDTIAERLLQLGAQAPA   73 (151)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHEE--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhheeee--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence            34677788888887777777775444444  45899999999999999999999999999999999854

>d1n1qa_ a.25.1.1 (A:) Dodecameric ferritin homolog {Bacillus brevis, Dps [TaxId: 1393]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Dodecameric ferritin homolog
species: Bacillus brevis, Dps [TaxId: 1393]

Probab=95.28  E-value=0.05  Score=39.50  Aligned_cols=69  Identities=17%  Similarity=0.113  Sum_probs=53.2

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeee
Q 030066           91 FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKL  161 (183)
Q Consensus        91 ~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l  161 (183)
                      ..+.+...||+.+.-.+.....|+..--...  ...+.++..+|.++.++..+|++++.+++...||.+..
T Consensus         5 ~~~~~~~~Ln~~lA~~~~l~~~~~~~HWnv~--G~~F~~lH~~~ee~y~e~~~~~D~iAERi~~Lgg~p~~   73 (149)
T d1n1qa_           5 IQQLVAVLLNRQVANWVVLYVKLHNFHWNVN--GPNFFTLHEKFEELYTEASGHIDTLAERVLSIGGSPIA   73 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhcee--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCc
Confidence            3456677788777766655555653333333  45799999999999999999999999999999999844

>d1ji4a_ a.25.1.1 (A:) Dodecameric ferritin homolog {Helicobacter pylori, Nap [TaxId: 210]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Dodecameric ferritin homolog
species: Helicobacter pylori, Nap [TaxId: 210]

Probab=94.29  E-value=0.1  Score=37.60  Aligned_cols=64  Identities=13%  Similarity=0.001  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeee
Q 030066           95 CEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVK  160 (183)
Q Consensus        95 ~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~  160 (183)
                      ..+.||+.+.-.......|..+ .|--. ..++..+..+|.+++++..+|++.+.+++...||.+.
T Consensus         3 ~~~~L~~~lA~~~~l~~~~~~~-HWnv~-G~~F~~lH~~f~e~y~~~~~~~D~iAERi~~LG~~p~   66 (144)
T d1ji4a_           3 TFEILKHLQADAIVLFMKVHNF-HWNVK-GTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHHPL   66 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-HHHEE-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhhh-cccee-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            3567776665555444445433 33332 4589999999999999999999999999999999984

>d2bk6a1 a.25.1.1 (A:7-156) Dodecameric ferritin homolog {Listeria innocua [TaxId: 1642]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Dodecameric ferritin homolog
species: Listeria innocua [TaxId: 1642]

Probab=92.42  E-value=0.34  Score=34.72  Aligned_cols=65  Identities=15%  Similarity=0.125  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeee
Q 030066           95 CEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKL  161 (183)
Q Consensus        95 ~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V~l  161 (183)
                      +.+.||..+.-.......|. -+.|.-. ..++..+..+|.++.++..+|+..+.+++...||.+.-
T Consensus         3 ~~e~L~~~lA~~~~l~~k~~-~~HWnv~-G~~F~~lH~~~e~~y~~~~~~~D~iAERi~~Lg~~p~~   67 (150)
T d2bk6a1           3 TKEFLNHQVANLNVFTVKIH-QIGWYMR-GHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFS   67 (150)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHHHHCC-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHH-hhhhhee-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            45677766654443333344 4445444 46899999999999999999999999999999998743

>d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Nigerythrin, N-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=91.75  E-value=0.22  Score=35.02  Aligned_cols=53  Identities=19%  Similarity=0.196  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHH
Q 030066           95 CEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLM  149 (183)
Q Consensus        95 ~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLi  149 (183)
                      .+..+......|..+.-.|..+.-.++..  +-+..+.||.....+|..|+++|+
T Consensus        83 ~~~L~~~~~~ee~e~~~~Y~~~~~~A~~~--~d~~~~~~f~~i~~~E~~H~e~F~  135 (135)
T d1yuza1          83 DLNLISGANGEIYETSDMYPAFIRKAQEE--GNSKAVHVFTRAKLAESVHAERYL  135 (135)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHhC
Confidence            34555555556678899999999999854  789999999999999999999986

>d1lkoa1 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Rubrerythrin, N-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=91.29  E-value=0.78  Score=32.38  Aligned_cols=63  Identities=11%  Similarity=0.211  Sum_probs=53.4

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030066           90 KFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNK  154 (183)
Q Consensus        90 ~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~  154 (183)
                      .........+...+..|..+.-.|-.++..+..  .+-+..+.||.....+|.+|++.|-+++..
T Consensus        78 ~~~~~~~~l~~~~~~~e~e~~~~y~~~~~~a~~--~~D~~~~~~f~~i~~~E~~H~~~f~~~l~~  140 (146)
T d1lkoa1          78 IIADTHANLIASAAGEHHEYTEMYPSFARIARE--EGYEEIARVFASIAVAEEFHEKRFLDFARN  140 (146)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345567778888888898899999999999985  488999999999999999999998887643

>d2yw6a1 a.25.1.1 (A:17-157) Dodecameric ferritin homolog {Mycobacterium smegmatis [TaxId: 1772]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Dodecameric ferritin homolog
species: Mycobacterium smegmatis [TaxId: 1772]

Probab=90.36  E-value=0.9  Score=32.06  Aligned_cols=62  Identities=11%  Similarity=0.121  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCee
Q 030066           96 EAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKV  159 (183)
Q Consensus        96 e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V  159 (183)
                      .+.||+++.-.......++ .+.|--. .-++.++..+|.++.++..+|+..+.+++...||.+
T Consensus         2 ~~~L~~~La~~~~L~~~~~-~~HWnv~-G~~F~~~H~~fee~y~~~~~~~D~iAERi~~Lg~~p   63 (141)
T d2yw6a1           2 ADLLQKQLSTYNDLHLTLK-HVHWNVV-GPNFIGVHEMIDPQVELVRGYADEVAERIATLGKSP   63 (141)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHHHEE-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHH-hcccccc-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            4566666655544333333 2344333 357999999999999999999999999999999987

>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Hypothetical protein TM1526
species: Thermotoga maritima [TaxId: 2336]

Probab=90.03  E-value=1  Score=31.17  Aligned_cols=55  Identities=22%  Similarity=0.271  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030066           94 DCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQN  153 (183)
Q Consensus        94 e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n  153 (183)
                      ...++|..-|..|..+.-.|..++..+.     =+.....|...+++|+.|...|.++.-
T Consensus        92 ~~~~~l~~ai~~E~~a~~~Y~~l~~~~~-----d~~~r~~~~~i~~eE~~H~~~l~~l~~  146 (149)
T d1vjxa_          92 TLKEVLDIAISVEKDSIILYYELKDGLV-----NSDAQKTVKKIIDQEKEHLRKLLEMKR  146 (149)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHCC-----SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4678899999999999999999988776     356899999999999999999988764

>d2fkza1 a.25.1.1 (A:1-154) Bacterioferritin (cytochrome b1) {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Bacterioferritin (cytochrome b1)
species: Azotobacter vinelandii [TaxId: 354]

Probab=87.90  E-value=1.9  Score=30.40  Aligned_cols=61  Identities=15%  Similarity=0.176  Sum_probs=53.1

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030066           91 FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQN  153 (183)
Q Consensus        91 ~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n  153 (183)
                      ....+...+...+..|..+.-.|..+...+..  .+=++...||+.-..+|.+|+..|-+++.
T Consensus        79 ~~~~~~e~l~~~l~~E~~~~~~y~~~~~~a~~--~~D~~t~~~l~~il~eE~~h~~~l~~~L~  139 (154)
T d2fkza1          79 IGEHTKEMLECDLKLEQAGLPDLKAAIAYCES--VGDYASRELLEDILESEEDHIDWLETQLD  139 (154)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45568888899999999999999999999984  47888999999999999999998876664

>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Hypothetical protein PF1190
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=86.59  E-value=2.6  Score=28.90  Aligned_cols=60  Identities=15%  Similarity=0.111  Sum_probs=49.5

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHH---HHHHHh
Q 030066           90 KFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKL---MEYQNK  154 (183)
Q Consensus        90 ~~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekL---ikY~n~  154 (183)
                      .....+.++|...+..|..+...|..++..+.+     +...+.|...+.+|.+|...|   ++++.+
T Consensus        92 ~~~~~~~~~l~~a~~~E~~a~~~Y~~la~~~~d-----~~~~~l~~~i~~~E~~H~~~l~~~~d~l~~  154 (158)
T d2fzfa1          92 EKVQDIIDLIRWAMKAEEIAAEFYLKLEEMVKE-----EEKKRLMRYLADMERGHYYTLRAEYELLLN  154 (158)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCS-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            344578899999999999999999999988762     578899999999999999655   566643

>d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284 homologue {Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: AMB4284-like
domain: Uncharacterized protein AMB4284 homologue
species: Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]

Probab=86.24  E-value=2.5  Score=28.95  Aligned_cols=60  Identities=17%  Similarity=0.083  Sum_probs=50.7

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030066           91 FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKR  155 (183)
Q Consensus        91 ~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~R  155 (183)
                      .......+|...|..|-.+...|.-++.-+.+     +.+.+.|...+.+|..|+..|-+++..-
T Consensus        87 ~~~~~~~~l~~Al~~E~~a~~~Y~~~a~~~~d-----~~~r~~~~~l~~~E~~H~~~l~~~l~~~  146 (152)
T d2oh3a1          87 YLMTPYHALRYARDNEIRGMEYYKEAAANSAD-----PEVKRLGADFAAEEAEHVVALDKWIEKT  146 (152)
T ss_dssp             GGGSHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33457888999999999999999999987763     5688999999999999999998887653

>d1j30a_ a.25.1.1 (A:) Hypothetical rubrerythrin {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Hypothetical rubrerythrin
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=84.64  E-value=3.7  Score=28.29  Aligned_cols=46  Identities=20%  Similarity=0.379  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030066          106 EYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQN  153 (183)
Q Consensus       106 EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n  153 (183)
                      |..+.-.|-.++..+...  +-.+.+.||.....+|.+|++.|-+.+.
T Consensus        91 ~~e~~~~y~~~~~~A~~e--~d~~~~~~~~~i~~~E~~H~~~f~~~l~  136 (141)
T d1j30a_          91 TYEWTQMYPGFAKVAREE--GFPEVAEWFETLARAEKSHAEKFQNVLK  136 (141)
T ss_dssp             HHHHHTHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445777788888888854  8999999999999999999998877663

>d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Desulfovibrio desulfuricans [TaxId: 876]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Bacterioferritin (cytochrome b1)
species: Desulfovibrio desulfuricans [TaxId: 876]

Probab=83.07  E-value=4.1  Score=29.09  Aligned_cols=60  Identities=13%  Similarity=0.088  Sum_probs=49.8

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 030066           91 FTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQ  152 (183)
Q Consensus        91 ~s~e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~  152 (183)
                      ......+.|...+..|..+.-.|..+...++.  .+=++...+|..-..+|.+|+..|-+.+
T Consensus        81 ~~~~~~e~l~~~l~~E~~~~~~y~~~~~~A~~--~~D~~t~~~l~~il~eE~~H~~~~e~~l  140 (169)
T d1nf4a_          81 TGQAVPVIYESDADQEDATIEAYSQFLKVCKE--QGDIVTARLFERIIEEEQAHLTYYENIG  140 (169)
T ss_dssp             CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456678888899999999999999999984  4678899999999999999996665533

>d2itba1 a.25.1.7 (A:3-201) Putative tRNA-(Ms(2)io(6)a)-hydroxylase PP2188 {Pseudomonas putida [TaxId: 303]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: MiaE-like
domain: Putative tRNA-(Ms(2)io(6)a)-hydroxylase PP2188
species: Pseudomonas putida [TaxId: 303]

Probab=82.59  E-value=3.3  Score=32.16  Aligned_cols=62  Identities=19%  Similarity=0.335  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCee
Q 030066           94 DCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKV  159 (183)
Q Consensus        94 e~e~aLNeQIn~EL~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n~RGG~V  159 (183)
                      +.+..|.++-+-|-.|+-+=++|=+-|-    ..+.+..-+-..+.||++|-+..++-+.+||...
T Consensus        24 ~~~~~L~DHA~cEkKAA~~Alsli~rYp----~~~~Lv~~m~~La~EEL~HF~qV~~im~~Rgi~l   85 (199)
T d2itba1          24 DQETLLIDHKNCEFKAASTALSLIAKYN----THLDLINMMSRLAREELVHHEQVLRLMKRRGVPL   85 (199)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHTT----TCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHCC----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            4678999999999999999988866655    3678999999999999999999999999999764

>d1nnqa1 a.25.1.1 (A:2-134) Rubrerythrin, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Rubrerythrin, N-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=81.47  E-value=3.3  Score=29.12  Aligned_cols=50  Identities=20%  Similarity=0.137  Sum_probs=41.8

Q ss_pred             HHHHH-HHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030066          102 QINVE-YNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQN  153 (183)
Q Consensus       102 QIn~E-L~ASy~YlsMAayFd~dnv~L~GfAkFF~~qSeEEreHAekLikY~n  153 (183)
                      .|..| ..+.-.|-..+..|..  .+..+.+.+|.....+|..|++.|-+.+.
T Consensus        75 ~~~~e~~e~~~~Y~e~~~~a~~--egd~~~a~~f~~i~~~E~~Ha~~f~~~l~  125 (133)
T d1nnqa1          75 GIEGETFEVEEMYPVYNKAAEF--QGEKEAVRTTHYALEAEKIHAELYRKAKE  125 (133)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445 5677889999999995  48999999999999999999999887663