Citrus Sinensis ID: 030091

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180---
Protein Sequence
MEATSLISLSSFAAGASSLPPVLCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP
Secondary Structure (PSIPRED)
ccccccccHHHHccccccccccEEEcccccHHHHHccccccccccHHHHHHHHHHHccHHHcccccccccccccccHHHHHHHHHcccEEEEcccHHHHHcccccccEEccccccccccccccHHHHHHHHHccccccEEEEccccHHHHHHHHHHHHcccccccccHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHcccccccccccEEccccccccEEEEHHcccccccEEEEcccccccHHHHHccccccccccccccHHHHHHHHHcccEEEEEccHHHHHcccccccEEEcccccccccccccHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHcccccEEccHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MEATSLISLssfaagasslppvlcphgnnrrgllSLTVdqqrcdnigfisskilsfcpkaslrgnleavgvptsvPVRVAHELLQAGhryldvrtpeefsaghatgainvpymyrvgsgmtknLKFVEEVSTRFrkhdeiigcqsgkrSMMAATDLLNAGFAGITDIAGGFAawrqnglptep
Flexible Loop (DISEMBL)
MEATSLISLSSFAAGASSLPPVLCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVStrfrkhdeiigcqsgkrSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP
Low Complexity Region (SEG)
MEATslislssfaagasslPPVLCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP
Disordered region (IsUnstruct)
********************PVLCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWR********
Disordered Region (DISOPRED)
*****LISLSSFAAGASSLPPVLCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLR***********VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT**
Disordered Region (DISEMBL)
********LSSFAAGASSLPPVLCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP
Disordered Region (DISPRO)
*************AGASSLPPVLCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEATSLISLSSFAAGASSLPPVLCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	183	2.2.26 [Sep-21-2011]
Q38853	182	Rhodanese-like domain-con	yes	no	0.939	0.945	0.539	2e-46
P27626	183	Senescence-associated pro	N/A	no	0.606	0.606	0.696	6e-42
Q39129	120	Thiosulfate sulfurtransfe	no	no	0.612	0.933	0.681	3e-39
Q9FKW8	136	Thiosulfate sulfurtransfe	no	no	0.584	0.786	0.454	2e-22
Q8RUD6	169	Rhodanese-like domain-con	no	no	0.579	0.627	0.392	3e-18
F4IPI4	156	Rhodanese-like domain-con	no	no	0.759	0.891	0.326	7e-15
Q94A65	224	Rhodanese-like domain-con	no	no	0.590	0.482	0.303	4e-07
Q7MQ91	106	Thiosulfate sulfurtransfe	yes	no	0.530	0.915	0.302	2e-06
Q8DD53	106	Thiosulfate sulfurtransfe	yes	no	0.530	0.915	0.302	2e-06
A4VHH7	109	Thiosulfate sulfurtransfe	yes	no	0.497	0.834	0.284	2e-06

>sp|Q38853|STR15_ARATH Rhodanese-like domain-containing protein 15, chloroplastic OS=Arabidopsis thaliana GN=STR15 PE=2 SV=1

 Score =  185 bits (469), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 103/191 (53%), Positives = 125/191 (65%), Gaps = 19/191 (9%)

Query: 1   MEATSLISLSSFAAGASSLPPVLCPHGN------NRRGLLSLTVDQQRCDNIGFISSKIL 54
           ME T+  + S     +S++ P L   G+       RRG++   V   R  N  +  +   
Sbjct: 1   METTAFNTTSRIGNWSSAISPPLQTCGSFKCQLPTRRGVI---VADLRNSNFRWRKATTT 57

Query: 55  SFCPKASLRGNL--EAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPY 112
           S       RGN+  EAV +PTSVPVRVA EL QAG+RYLDVRTP+EFS GH T AINVPY
Sbjct: 58  S-------RGNVAAEAVKIPTSVPVRVARELAQAGYRYLDVRTPDEFSIGHPTRAINVPY 110

Query: 113 MYRVGSGMTKNLKFVEEVSTRFRKHDE-IIGCQSGKRSMMAATDLLNAGFAGITDIAGGF 171
           MYRVGSGM KN  F+ +VS+ FRKHDE IIGC+SG+ S MA+TDLL AGF  ITDIAGG+
Sbjct: 111 MYRVGSGMVKNPSFLRQVSSHFRKHDEIIIGCESGQMSFMASTDLLTAGFTAITDIAGGY 170

Query: 172 AAWRQNGLPTE 182
            AW +N LP E
Sbjct: 171 VAWTENELPVE 181

Arabidopsis thaliana (taxid: 3702)

>sp|P27626|DIN1_RAPSA Senescence-associated protein DIN1 OS=Raphanus sativus GN=DIN1 PE=2 SV=1

 Score =  170 bits (430), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 78/112 (69%), Positives = 94/112 (83%), Gaps = 1/112 (0%)

Query: 72  PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS 131
           PTSVPVRVA EL QAG+++LDVRTP+EFS GH + AINVPYMYRVGSGM KN  F+ +VS
Sbjct: 71  PTSVPVRVARELAQAGYKHLDVRTPDEFSIGHPSRAINVPYMYRVGSGMVKNPSFLRQVS 130

Query: 132 TRFRKHDE-IIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 182
           + FRKHDE IIGC+SG+RS+MA+T+LL AGF G+TDIAGG+  W +N LP E
Sbjct: 131 SHFRKHDEIIIGCESGERSLMASTELLTAGFTGVTDIAGGYVPWTENELPVE 182

Is thought to act during the early stages of leaf senescence.

Raphanus sativus (taxid: 3726)

>sp|Q39129|STR16_ARATH Thiosulfate sulfurtransferase 16, chloroplastic OS=Arabidopsis thaliana GN=STR16 PE=1 SV=2

 Score =  161 bits (407), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 77/113 (68%), Positives = 91/113 (80%), Gaps = 1/113 (0%)

Query: 71  VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV 130
           VP+SV V VAH+LL AGHRYLDVRTPEEFS GHA GAINVPYM R  SGM+KN  F+E+V
Sbjct: 7   VPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNPDFLEQV 66

Query: 131 STRFRKHDEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 182
           S+ F + D II GCQSG RS+ A TDLL+AGF G+ DI GG++AW +NGLPT+
Sbjct: 67  SSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTK 119

Thought to act during the early stages of leaf senescence. Catalyzes the transfer of a sulfur ion from a donor to cyanide or to other thiol compounds. Substrate preference is thiosulfate > 3-mercaptopyruvate.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9FKW8|STR18_ARATH Thiosulfate sulfurtransferase 18 OS=Arabidopsis thaliana GN=STR18 PE=1 SV=1

 Score =  105 bits (261), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/110 (45%), Positives = 70/110 (63%), Gaps = 3/110 (2%)

Query: 74  SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA--INVPYMYRVGSGMTKNLKFVEEVS 131
           SV V  A  LLQ+GH+YLDVRT +EF  GH   A  +N+PYM     G  KN +F+E+VS
Sbjct: 16  SVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVS 75

Query: 132 TRFRKHDEI-IGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLP 180
           +     D+I +GCQSG RS+ A T+L+ AG+  + ++ GG+ AW  +  P
Sbjct: 76  SLLNPADDILVGCQSGARSLKATTELVAAGYKKVRNVGGGYLAWVDHSFP 125

Catalyzes the transfer of a sulfur ion from a donor to cyanide or to other thiol compounds. Substrate preference is thiosulfate > 3-mercaptopyruvate.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

>sp|Q8RUD6|STR19_ARATH Rhodanese-like domain-containing protein 19, mitochondrial OS=Arabidopsis thaliana GN=STR19 PE=2 SV=1

 Score = 91.3 bits (225), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 62/107 (57%), Gaps = 1/107 (0%)

Query: 74  SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR 133
           +V V  A   L  GHRYLDVRT EEF+  H   A+N+PYM++   G   N  F+ +V++ 
Sbjct: 43  TVDVYTAKGFLSTGHRYLDVRTNEEFAKSHVEEALNIPYMFKTDEGRVINPDFLSQVASV 102

Query: 134 FRKHDE-IIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGL 179
            +K +  I+ C +G R   A  DLLN G+  + ++ GG++AW   G 
Sbjct: 103 CKKDEHLIVACNAGGRGSRACVDLLNEGYDHVANMGGGYSAWVDAGF 149

Arabidopsis thaliana (taxid: 3702)

>sp|F4IPI4|STR17_ARATH Rhodanese-like domain-containing protein 17 OS=Arabidopsis thaliana GN=STR17 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 75/144 (52%), Gaps = 5/144 (3%)

Query: 44  DNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRV--AHELLQAGHRYLDVRTPEEFSA 101
           D++  + S +L F     L     ++  P  + + V  A +LL +G+ +LDVRT EEF  
Sbjct: 2   DSLHVLRSFLLLFIVFNHLPRTTTSMSEPKVITIDVNQAQKLLDSGYTFLDVRTVEEFKK 61

Query: 102 GH--ATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSMMAATDLLN 158
           GH  +    NVPY      G   N  F++ VS+   + D +I GC+SG RS+ A   L++
Sbjct: 62  GHVDSENVFNVPYWLYTPQGQEINPNFLKHVSSLCNQTDHLILGCKSGVRSLHATKFLVS 121

Query: 159 AGFAGITDIAGGFAAWRQNGLPTE 182
           +GF  + ++ GG+ AW     P +
Sbjct: 122 SGFKTVRNMDGGYIAWVNKRFPVK 145

Arabidopsis thaliana (taxid: 3702)

>sp|Q94A65|STR14_ARATH Rhodanese-like domain-containing protein 14, chloroplastic OS=Arabidopsis thaliana GN=At4g27700 PE=2 SV=1

 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 62/145 (42%), Gaps = 37/145 (25%)

Query: 74  SVPVRVAHELLQAGH-RYLDVRTPEEFSAGHATGAINVPYMYR----------------- 115
           SV V+ A  L +  +   LDVR   E+ AGH  GAINV  MYR                 
Sbjct: 76  SVDVKEAQRLQKENNFVILDVRPEAEYKAGHPPGAINVE-MYRLIREWTAWDIARRLGFA 134

Query: 116 ---VGSGMTKNLKFVEEVSTRFRKHDEII-GCQSG--------------KRSMMAATDLL 157
              + SG  +N +F++ V  +  K  +II  C S                RS++AA  L+
Sbjct: 135 FFGIFSGTEENPEFIQSVEAKLDKEAKIIVACSSAGTMKPTQNLPEGQQSRSLIAAYLLV 194

Query: 158 NAGFAGITDIAGGFAAWRQNGLPTE 182
             G+  +  + GG   W + GLP E
Sbjct: 195 LNGYKNVFHLEGGIYTWGKEGLPVE 219

Arabidopsis thaliana (taxid: 3702)

>sp|Q7MQ91|GLPE_VIBVY Thiosulfate sulfurtransferase GlpE OS=Vibrio vulnificus (strain YJ016) GN=glpE PE=3 SV=1

 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 12/109 (11%)

Query: 75  VPVRVAHELLQAGH-RYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR 133
           + V+ AH L+  G  R +D+R P+ F+  HA  A ++     V     + ++F + V   
Sbjct: 7   IDVQGAHALISRGEARLVDIRDPQSFAVAHAQSAFHLTNDSIVN--FMQQVEFEQPV--- 61

Query: 134 FRKHDEIIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 182
                 ++ C  G  S  AA  L+N GF  +  + GGF AW +  LP E
Sbjct: 62  ------LVMCYHGISSQGAAQYLVNQGFEEVYSVDGGFEAWHRASLPVE 104

Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide.

Vibrio vulnificus (strain YJ016) (taxid: 196600)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

>sp|Q8DD53|GLPE_VIBVU Thiosulfate sulfurtransferase GlpE OS=Vibrio vulnificus (strain CMCP6) GN=glpE PE=3 SV=1

 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 12/109 (11%)

Query: 75  VPVRVAHELLQAGH-RYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR 133
           + V+ AH L+  G  R +D+R P+ F+  HA  A ++     V     + ++F + V   
Sbjct: 7   IDVQGAHALISRGEARLVDIRDPQSFAVAHAQSAFHLTNDSIVN--FMQQVEFEQPV--- 61

Query: 134 FRKHDEIIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 182
                 ++ C  G  S  AA  L+N GF  +  + GGF AW +  LP E
Sbjct: 62  ------LVMCYHGISSQGAAQYLVNQGFEEVYSVDGGFEAWHRASLPVE 104

Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide.

Vibrio vulnificus (taxid: 672)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

>sp|A4VHH7|GLPE_PSEU5 Thiosulfate sulfurtransferase GlpE OS=Pseudomonas stutzeri (strain A1501) GN=glpE PE=3 SV=1

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 11/102 (10%)

Query: 75  VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF 134
           +P   AH +  AG   +D+R P  F+ GH +G+ ++            N    + ++   
Sbjct: 7   IPPEQAHAMRNAGAVIVDIRDPHSFANGHISGSRHL-----------DNHSLPDFIAAAD 55

Query: 135 RKHDEIIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ 176
             H  I+ C  G  S  AA  L+N GF+ +  + GGF  WR 
Sbjct: 56  LDHPLIVTCYHGHSSQSAAAYLVNQGFSEVYSLDGGFELWRH 97

Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide.

Pseudomonas stutzeri (strain A1501) (taxid: 379731)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
224133954	180	predicted protein [Populus trichocarpa]	0.967	0.983	0.695	3e-63
255579783	182	Senescence-associated protein DIN1, puta	0.978	0.983	0.695	9e-62
351728052	186	uncharacterized protein LOC100305968 [Gl	0.732	0.720	0.740	7e-52
357483967	185	Senescence-associated protein DIN1 [Medi	0.732	0.724	0.742	2e-51
351726216	185	uncharacterized protein LOC100499831 [Gl	0.732	0.724	0.740	5e-51
359497218	177	PREDICTED: senescence-associated protein	0.814	0.841	0.670	6e-51
388501622	179	unknown [Lotus japonicus]	0.732	0.748	0.720	2e-50
449434108	184	PREDICTED: rhodanese-like domain-contain	0.879	0.875	0.620	3e-46
7340289	150	OP1 [Cucumis sativus]	0.803	0.98	0.648	2e-45
147782977	176	hypothetical protein VITISV_010789 [Viti	0.786	0.818	0.632	2e-45

>gi|224133954|ref|XP_002327720.1| predicted protein [Populus trichocarpa] gi|222836805|gb|EEE75198.1| predicted protein [Populus trichocarpa]

 Score =  246 bits (628), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 128/184 (69%), Positives = 147/184 (79%), Gaps = 7/184 (3%)

Query: 1   MEATSLISLSSFAAGASSLPPVLCPHG-NNRRGLLSLTVDQQRCDNIGFISSKILSFCPK 59
           M A +++   S +  +++L PVLCP   N RRG+ +  V+ +RC +I  I+ K LSF PK
Sbjct: 1   MAAKAVVCYGS-STSSTTLRPVLCPQQLNKRRGVFA--VNSRRC-SIN-INHKSLSFRPK 55

Query: 60  ASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSG 119
            SLR NLEA G+PTSVPVRVAHEL QAGHRYLDVRTP+EFS GHA GAIN+PYMYRVGSG
Sbjct: 56  TSLRWNLEATGIPTSVPVRVAHELHQAGHRYLDVRTPDEFSTGHAAGAINIPYMYRVGSG 115

Query: 120 MTKNLKFVEEVSTRFRKHDEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNG 178
           MTKN KFVEEVS+ FRKHDEII GCQ GKRSMMAATDLL AGF  +TDIAGGFAAW QNG
Sbjct: 116 MTKNPKFVEEVSSHFRKHDEIIVGCQLGKRSMMAATDLLAAGFTAVTDIAGGFAAWTQNG 175

Query: 179 LPTE 182
           LPT+
Sbjct: 176 LPTD 179

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579783|ref|XP_002530729.1| Senescence-associated protein DIN1, putative [Ricinus communis] gi|223529693|gb|EEF31635.1| Senescence-associated protein DIN1, putative [Ricinus communis]

 Score =  241 bits (615), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 128/184 (69%), Positives = 149/184 (80%), Gaps = 5/184 (2%)

Query: 1   MEATSLISLSSFAAGASSLPPVLCPHGNNRRGLLSLT-VDQQRCDNIGFISSKILSFCPK 59
           MEA S++S ++F +  +SL P  CP   N R LL L  ++  R  +IG I+ K +SFCPK
Sbjct: 1   MEAKSIVSSATFTS--TSLCPSFCPSNLNNRKLLLLPLINNPRRLSIG-INQKSVSFCPK 57

Query: 60  ASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSG 119
           A LRGNLEAVGVPTSVPVRVAHELL AGHRYLDVRTPEEFSAGH  GAIN+PYMYRVGSG
Sbjct: 58  AGLRGNLEAVGVPTSVPVRVAHELLLAGHRYLDVRTPEEFSAGHVVGAINIPYMYRVGSG 117

Query: 120 MTKNLKFVEEVSTRFRKHDE-IIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNG 178
           M KN KF+E+VS+ F K++E IIGCQSGKRSMMAATDLL+AG+  +TDIAGG+AAW QNG
Sbjct: 118 MKKNTKFLEQVSSHFGKYNEIIIGCQSGKRSMMAATDLLSAGYTAVTDIAGGYAAWTQNG 177

Query: 179 LPTE 182
           LPTE
Sbjct: 178 LPTE 181

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351728052|ref|NP_001235646.1| uncharacterized protein LOC100305968 [Glycine max] gi|255627141|gb|ACU13915.1| unknown [Glycine max]

 Score =  208 bits (530), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 100/135 (74%), Positives = 116/135 (85%), Gaps = 1/135 (0%)

Query: 49  ISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAI 108
           +  K  +F  +ASL+GNLEA+ VPTSVPVRVA+ELL AGHRYLDVRTPEEF AGHA GAI
Sbjct: 51  VPPKFPNFRREASLQGNLEAIRVPTSVPVRVAYELLLAGHRYLDVRTPEEFDAGHAPGAI 110

Query: 109 NVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSMMAATDLLNAGFAGITDI 167
           N+PYM+RVGSGMTKN  F+ EVS++FRK DEII GC+ GKRSMMAA+DLL AGF G+TD+
Sbjct: 111 NIPYMFRVGSGMTKNSNFIREVSSQFRKDDEIIVGCELGKRSMMAASDLLAAGFTGLTDM 170

Query: 168 AGGFAAWRQNGLPTE 182
           AGG+AAW QNGLPTE
Sbjct: 171 AGGYAAWTQNGLPTE 185

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483967|ref|XP_003612270.1| Senescence-associated protein DIN1 [Medicago truncatula] gi|217071246|gb|ACJ83983.1| unknown [Medicago truncatula] gi|355513605|gb|AES95228.1| Senescence-associated protein DIN1 [Medicago truncatula] gi|388495624|gb|AFK35878.1| unknown [Medicago truncatula]

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 101/136 (74%), Positives = 113/136 (83%), Gaps = 2/136 (1%)

Query: 49  ISSKILSFCPKASLRGNLE-AVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA 107
           +  K  +F     L+GNLE  VGVPTSVPVRVAHELL AGH+YLDVRT EEF+AGHA GA
Sbjct: 49  VQPKFSNFRTMCGLKGNLEEVVGVPTSVPVRVAHELLLAGHKYLDVRTTEEFNAGHAPGA 108

Query: 108 INVPYMYRVGSGMTKNLKFVEEVSTRFRKHDE-IIGCQSGKRSMMAATDLLNAGFAGITD 166
           IN+PYMY+VGSGMTKN  FV+EVS+ FRK DE I+GCQ GKRSMMAATDLL AGF G+TD
Sbjct: 109 INIPYMYKVGSGMTKNSNFVKEVSSHFRKEDEVIVGCQLGKRSMMAATDLLAAGFTGLTD 168

Query: 167 IAGGFAAWRQNGLPTE 182
           IAGG+AAW QNGLPTE
Sbjct: 169 IAGGYAAWTQNGLPTE 184

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726216|ref|NP_001236607.1| uncharacterized protein LOC100499831 [Glycine max] gi|255626991|gb|ACU13840.1| unknown [Glycine max]

 Score =  205 bits (522), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 100/135 (74%), Positives = 115/135 (85%), Gaps = 1/135 (0%)

Query: 49  ISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAI 108
           +  K  SF  +A+L+GNLEAV VPTSVPVRVA+ELL AGHRYLDV TPEEF+AGHA GAI
Sbjct: 50  VPPKFPSFRREAALQGNLEAVRVPTSVPVRVAYELLLAGHRYLDVGTPEEFNAGHAPGAI 109

Query: 109 NVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSMMAATDLLNAGFAGITDI 167
           N+PYM+RVGSGMTKN  F+ EVS+ FRK DEII GC+ GKRSMMAA+DLL AGF G+TD+
Sbjct: 110 NIPYMFRVGSGMTKNSNFIREVSSNFRKEDEIIVGCELGKRSMMAASDLLAAGFTGLTDM 169

Query: 168 AGGFAAWRQNGLPTE 182
           AGG+AAW QNGLPTE
Sbjct: 170 AGGYAAWTQNGLPTE 184

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497218|ref|XP_002271073.2| PREDICTED: senescence-associated protein DIN1-like [Vitis vinifera] gi|296088206|emb|CBI35721.3| unnamed protein product [Vitis vinifera]

 Score =  205 bits (522), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 104/155 (67%), Positives = 115/155 (74%), Gaps = 6/155 (3%)

Query: 29  NRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGH 88
           N R L  L  + QRC     +      FC   + RGNLE+ GVPTSVPVRVA ELLQAGH
Sbjct: 27  NFRCLSPLKANPQRC-----VVGGTKRFCRVVAARGNLESTGVPTSVPVRVALELLQAGH 81

Query: 89  RYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGK 147
           RYLDVRTPEEFSAGHA+GAINVPYM R GSGM KN KF+ EVS+ FRK DEII GCQ GK
Sbjct: 82  RYLDVRTPEEFSAGHASGAINVPYMLRFGSGMAKNPKFLVEVSSHFRKDDEIIVGCQKGK 141

Query: 148 RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 182
           RS+MA  DLL AGF  +TDIAGG+ AW QNGLPT+
Sbjct: 142 RSLMAVNDLLAAGFTAVTDIAGGYDAWSQNGLPTD 176

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501622|gb|AFK38877.1| unknown [Lotus japonicus]

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 98/136 (72%), Positives = 113/136 (83%), Gaps = 2/136 (1%)

Query: 49  ISSKILSFCPKASLRGNLEAVGV-PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA 107
           +  K  +F  + ++  NLEAVGV PTSVPVRVAHELL AGH+YLDVRTPEEF AGHA GA
Sbjct: 43  VQPKFQTFRVEGAMNQNLEAVGVVPTSVPVRVAHELLLAGHKYLDVRTPEEFDAGHAPGA 102

Query: 108 INVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSMMAATDLLNAGFAGITD 166
           IN+PYM++VGSGMTKN  FV+E S++FRK DEII GCQ GKRSMMAATDLL +GF G+TD
Sbjct: 103 INIPYMFKVGSGMTKNSNFVKEASSQFRKEDEIIVGCQLGKRSMMAATDLLASGFTGVTD 162

Query: 167 IAGGFAAWRQNGLPTE 182
           IAGG+AAW Q GLPTE
Sbjct: 163 IAGGYAAWTQTGLPTE 178

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434108|ref|XP_004134838.1| PREDICTED: rhodanese-like domain-containing protein 15, chloroplastic-like [Cucumis sativus] gi|449491287|ref|XP_004158850.1| PREDICTED: rhodanese-like domain-containing protein 15, chloroplastic-like [Cucumis sativus]

 Score =  189 bits (481), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 103/166 (62%), Positives = 117/166 (70%), Gaps = 5/166 (3%)

Query: 22  VLCPHGNN--RRGLL--SLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPV 77
           +L P+ NN   RG L   +T   QR      IS K  S    A LR  LEA  VPTSVPV
Sbjct: 18  LLLPNTNNLTSRGRLLPMITGSLQRRRRDSAISYKHWSTSRNAVLREELEATAVPTSVPV 77

Query: 78  RVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKH 137
           RVA ELLQAG RYLDVRTPEE+S GHA GAIN+PYMYRVGSGMT+N  F+ EV+  FRK 
Sbjct: 78  RVALELLQAGQRYLDVRTPEEYSVGHAPGAINIPYMYRVGSGMTRNPHFLAEVAIYFRKD 137

Query: 138 DEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 182
           DEII GC SGKRS+MAA DLL +G+  +TDIAGG+ AW +NGLP E
Sbjct: 138 DEIIVGCLSGKRSLMAAADLLASGYNYVTDIAGGYEAWSRNGLPME 183

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7340289|gb|AAF61174.1|AF245222_1 OP1 [Cucumis sativus]

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 96/148 (64%), Positives = 108/148 (72%), Gaps = 1/148 (0%)

Query: 36  LTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRT 95
           +T   QR      IS K  S    A LR  LEA  VPTSVPVRVA ELLQAG RYLDVRT
Sbjct: 2   ITGSLQRRRRDSAISYKHWSTSRNAVLREELEATAVPTSVPVRVALELLQAGQRYLDVRT 61

Query: 96  PEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSMMAAT 154
           PEE+S GHA GAIN+PYMYRVGSGMT+N  F+ EV+  FRK DEII GC SGKRS+MAA 
Sbjct: 62  PEEYSVGHAPGAINIPYMYRVGSGMTRNPHFLAEVAIYFRKDDEIIVGCLSGKRSLMAAA 121

Query: 155 DLLNAGFAGITDIAGGFAAWRQNGLPTE 182
           DLL +G+  +TDIAGG+ AW +NGLP E
Sbjct: 122 DLLASGYNYVTDIAGGYEAWSRNGLPME 149

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782977|emb|CAN72959.1| hypothetical protein VITISV_010789 [Vitis vinifera]

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 98/155 (63%), Positives = 109/155 (70%), Gaps = 11/155 (7%)

Query: 29  NRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGH 88
           N R L  L  + QRC     +       C   + RGNLE+ GVPTSVPVRVA ELLQAGH
Sbjct: 31  NFRCLSPLKANPQRC-----VVGGTKRLCXVVAARGNLESTGVPTSVPVRVALELLQAGH 85

Query: 89  RYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGK 147
           R     TPEEFSAGHA+GAINVPYM R GSGM KN KF+ EVS+ FRK DEII GCQ GK
Sbjct: 86  R-----TPEEFSAGHASGAINVPYMLRFGSGMAKNPKFLVEVSSHFRKDDEIIVGCQKGK 140

Query: 148 RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 182
           RS+MA  DLL AGF  +TDIAGG+ AW QNGLPT+
Sbjct: 141 RSLMAVNDLLAAGFTAVTDIAGGYDAWSQNGLPTD 175

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
TAIR|locus:2128038	182	SEN1 "AT4G35770" [Arabidopsis	0.655	0.659	0.715	1.9e-42
UNIPROTKB|B2C7Y6	185	NRIP1 "Chloroplast N receptor-	0.770	0.762	0.643	2.5e-42
TAIR|locus:2156937	120	STR16 "AT5G66040" [Arabidopsis	0.612	0.933	0.681	8e-37
TAIR|locus:2156882	138	STR18 "AT5G66170" [Arabidopsis	0.650	0.862	0.424	6.3e-21
TAIR|locus:505006261	169	AT2G21045 [Arabidopsis thalian	0.573	0.621	0.396	3.6e-18
TAIR|locus:2827795	156	AT2G17850 "AT2G17850" [Arabido	0.759	0.891	0.326	3.3e-15
UNIPROTKB|Q607E4	120	MCA1816 "Sulfurtransferase" [M	0.437	0.666	0.446	1.3e-11
UNIPROTKB|Q3Z6P8	144	DET1392 "Sulfurtransferase" [D	0.448	0.569	0.380	2.5e-10
TIGR_CMR|DET_1392	144	DET_1392 "rhodanese-like domai	0.448	0.569	0.380	2.5e-10
UNIPROTKB|Q8ECN1	132	SO_3105 "Periplasmic rhodanese	0.519	0.719	0.333	3.3e-08

TAIR|locus:2128038 SEN1 "AT4G35770" [Arabidopsis thaliana (taxid:3702)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 88/123 (71%), Positives = 100/123 (81%)

Query:    63 RGNL--EAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGM 120
             RGN+  EAV +PTSVPVRVA EL QAG+RYLDVRTP+EFS GH T AINVPYMYRVGSGM
Sbjct:    59 RGNVAAEAVKIPTSVPVRVARELAQAGYRYLDVRTPDEFSIGHPTRAINVPYMYRVGSGM 118

Query:   121 TKNLKFVEEVSTRFRKHDEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGL 179
              KN  F+ +VS+ FRKHDEII GC+SG+ S MA+TDLL AGF  ITDIAGG+ AW +N L
Sbjct:   119 VKNPSFLRQVSSHFRKHDEIIIGCESGQMSFMASTDLLTAGFTAITDIAGGYVAWTENEL 178

Query:   180 PTE 182
             P E
Sbjct:   179 PVE 181

GO:0003674 "molecular_function" evidence=ND

GO:0007568 "aging" evidence=IEP;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

UNIPROTKB|B2C7Y6 NRIP1 "Chloroplast N receptor-interacting protein 1" [Nicotiana benthamiana (taxid:4100)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 92/143 (64%), Positives = 108/143 (75%)

Query:    41 QRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFS 100
             Q+  N G  S++   F   A++   ++   VPTSVPVRVA ELLQAGHRYLDVRT EEFS
Sbjct:    43 QKRRNFGN-SNRTPGFSWMATVGEKVQVSTVPTSVPVRVALELLQAGHRYLDVRTAEEFS 101

Query:   101 AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSMMAATDLLNA 159
              GHA GAIN+PYM+R+GSGM KN  F E+V   F K DEII GCQ GKRS MAATDLL A
Sbjct:   102 DGHAPGAINIPYMFRIGSGMIKNPNFAEQVLEHFGKDDEIIVGCQLGKRSFMAATDLLAA 161

Query:   160 GFAGITDIAGGFAAWRQNGLPTE 182
             GF+G+TDIAGG+AAW +NGLPT+
Sbjct:   162 GFSGVTDIAGGYAAWTENGLPTD 184

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2156937 STR16 "AT5G66040" [Arabidopsis thaliana (taxid:3702)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 77/113 (68%), Positives = 91/113 (80%)

Query:    71 VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV 130
             VP+SV V VAH+LL AGHRYLDVRTPEEFS GHA GAINVPYM R  SGM+KN  F+E+V
Sbjct:     7 VPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNPDFLEQV 66

Query:   131 STRFRKHDEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 182
             S+ F + D II GCQSG RS+ A TDLL+AGF G+ DI GG++AW +NGLPT+
Sbjct:    67 SSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTK 119

GO:0007568 "aging" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0004792 "thiosulfate sulfurtransferase activity" evidence=IDA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

TAIR|locus:2156882 STR18 "AT5G66170" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 53/125 (42%), Positives = 76/125 (60%)

Query:    61 SLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA--INVPYMYRVGS 118
             S+  + +A  V  SV V  A  LLQ+GH+YLDVRT +EF  GH   A  +N+PYM     
Sbjct:     4 SISSSTKAEEV-VSVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQ 62

Query:   119 GMTKNLKFVEEVSTRFRKHDEI-IGCQSGKRSMMAATDLLNA--GFAGITDIAGGFAAWR 175
             G  KN +F+E+VS+     D+I +GCQSG RS+ A T+L+ A  G+  + ++ GG+ AW 
Sbjct:    63 GRVKNQEFLEQVSSLLNPADDILVGCQSGARSLKATTELVAAVSGYKKVRNVGGGYLAWV 122

Query:   176 QNGLP 180
              +  P
Sbjct:   123 DHSFP 127

GO:0007568 "aging" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0004792 "thiosulfate sulfurtransferase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:505006261 AT2G21045 [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 42/106 (39%), Positives = 62/106 (58%)

Query:    74 SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR 133
             +V V  A   L  GHRYLDVRT EEF+  H   A+N+PYM++   G   N  F+ +V++ 
Sbjct:    43 TVDVYTAKGFLSTGHRYLDVRTNEEFAKSHVEEALNIPYMFKTDEGRVINPDFLSQVASV 102

Query:   134 FRKHDE-IIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNG 178
              +K +  I+ C +G R   A  DLLN G+  + ++ GG++AW   G
Sbjct:   103 CKKDEHLIVACNAGGRGSRACVDLLNEGYDHVANMGGGYSAWVDAG 148

GO:0005737 "cytoplasm" evidence=ISM

GO:0007568 "aging" evidence=ISS;TAS

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2827795 AT2G17850 "AT2G17850" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 47/144 (32%), Positives = 75/144 (52%)

Query:    44 DNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRV--AHELLQAGHRYLDVRTPEEFSA 101
             D++  + S +L F     L     ++  P  + + V  A +LL +G+ +LDVRT EEF  
Sbjct:     2 DSLHVLRSFLLLFIVFNHLPRTTTSMSEPKVITIDVNQAQKLLDSGYTFLDVRTVEEFKK 61

Query:   102 GH--ATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSMMAATDLLN 158
             GH  +    NVPY      G   N  F++ VS+   + D +I GC+SG RS+ A   L++
Sbjct:    62 GHVDSENVFNVPYWLYTPQGQEINPNFLKHVSSLCNQTDHLILGCKSGVRSLHATKFLVS 121

Query:   159 AGFAGITDIAGGFAAWRQNGLPTE 182
             +GF  + ++ GG+ AW     P +
Sbjct:   122 SGFKTVRNMDGGYIAWVNKRFPVK 145

GO:0003674 "molecular_function" evidence=ND

GO:0007568 "aging" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

UNIPROTKB|Q607E4 MCA1816 "Sulfurtransferase" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 42/94 (44%), Positives = 56/94 (59%)

Query:    91 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-KHDE--IIGCQSGK 147
             LDVR PEE++AGH  GAIN+P       G+   ++F  E    F+ K D   ++ CQSG 
Sbjct:    34 LDVREPEEYAAGHLPGAINIP------RGV---VEFRIETHPVFQGKKDAAIVVYCQSGL 84

Query:   148 RSMMAATDLLNA-GFAGITDIAGGFAAWRQNGLP 180
             RS +A TD+L   G+ G   +AGGF AW + GLP
Sbjct:    85 RSTLA-TDILQQLGWRGTVSMAGGFKAWIEGGLP 117

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3Z6P8 DET1392 "Sulfurtransferase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 35/92 (38%), Positives = 51/92 (55%)

Query:    91 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIGCQSGKRSM 150
             LDVRTP E++ GH  GA+N+ Y Y   +    +L   ++  T       ++ C++G RS 
Sbjct:    62 LDVRTPSEYAQGHIPGAVNLDY-Y---ASFEASLSAFDKTKTY------LVYCRTGNRSA 111

Query:   151 MAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 182
              AA  +L+ GFA I ++ GG  AW   GLP E
Sbjct:   112 SAARLMLDNGFAAIYNMQGGINAWISGGLPLE 143

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|DET_1392 DET_1392 "rhodanese-like domain protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 35/92 (38%), Positives = 51/92 (55%)

Query:    91 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIGCQSGKRSM 150
             LDVRTP E++ GH  GA+N+ Y Y   +    +L   ++  T       ++ C++G RS 
Sbjct:    62 LDVRTPSEYAQGHIPGAVNLDY-Y---ASFEASLSAFDKTKTY------LVYCRTGNRSA 111

Query:   151 MAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 182
              AA  +L+ GFA I ++ GG  AW   GLP E
Sbjct:   112 SAARLMLDNGFAAIYNMQGGINAWISGGLPLE 143

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8ECN1 SO_3105 "Periplasmic rhodanese domain protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 35/105 (33%), Positives = 55/105 (52%)

Query:    78 RVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKH 137
             +VA E + +G   LDVRTPEEF+AGH   A+N+P+  +V +   K     ++        
Sbjct:    38 QVAWEKIASGAMVLDVRTPEEFAAGHLVNAVNIPFE-QVAAEFAKR-GIAKDTPV----- 90

Query:   138 DEIIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 182
               ++ C+SG+RS +A   L+ AG+   T   GG+    +    TE
Sbjct:    91 --VLYCRSGRRSGIATDALVAAGYTK-TYNGGGYQTLAETQPKTE 132

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q38853	STR15_ARATH	No assigned EC number	0.5392	0.9398	0.9450	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.8.1.1	0.914
3rd Layer	2.8.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	183
PLN02160	136	PLN02160, PLN02160, thiosulfate sulfurtransferase	3e-26
smart00450	100	smart00450, RHOD, Rhodanese Homology Domain	3e-19
cd00158	89	cd00158, RHOD, Rhodanese Homology Domain (RHOD); a	1e-17
pfam00581	106	pfam00581, Rhodanese, Rhodanese-like domain	2e-16
COG0607	110	COG0607, PspE, Rhodanese-related sulfurtransferase	7e-16
PRK08762	376	PRK08762, PRK08762, molybdopterin biosynthesis pro	8e-16
cd01522	117	cd01522, RHOD_1, Member of the Rhodanese Homology	6e-11
cd01524	90	cd01524, RHOD_Pyr_redox, Member of the Rhodanese H	1e-08
cd01528	101	cd01528, RHOD_2, Member of the Rhodanese Homology	1e-08
PRK05597	355	PRK05597, PRK05597, molybdopterin biosynthesis pro	3e-08
cd01527	99	cd01527, RHOD_YgaP, Member of the Rhodanese Homolo	9e-08
PRK00162	108	PRK00162, glpE, thiosulfate sulfurtransferase; Val	1e-07
cd01526	122	cd01526, RHOD_ThiF, Member of the Rhodanese Homolo	2e-07
cd01519	106	cd01519, RHOD_HSP67B2, Member of the Rhodanese Hom	3e-07
cd01529	96	cd01529, 4RHOD_Repeats, Member of the Rhodanese Ho	5e-07
PRK07411	390	PRK07411, PRK07411, hypothetical protein; Validate	1e-06
PRK10287	104	PRK10287, PRK10287, thiosulfate:cyanide sulfurtran	2e-06
TIGR02981	101	TIGR02981, phageshock_pspE, phage shock operon rho	9e-06
cd01447	103	cd01447, Polysulfide_ST, Polysulfide-sulfurtransfe	3e-05
cd01444	96	cd01444, GlpE_ST, GlpE sulfurtransferase (ST) and	5e-05
PRK11784	345	PRK11784, PRK11784, tRNA 2-selenouridine synthase;	2e-04
COG2897	285	COG2897, SseA, Rhodanese-related sulfurtransferase	3e-04
cd01449	118	cd01449, TST_Repeat_2, Thiosulfate sulfurtransfera	4e-04
PRK07878	392	PRK07878, PRK07878, molybdopterin biosynthesis-lik	7e-04
cd01534	95	cd01534, 4RHOD_Repeat_3, Member of the Rhodanese H	0.001
cd01520	128	cd01520, RHOD_YbbB, Member of the Rhodanese Homolo	0.001
TIGR03167	311	TIGR03167, tRNA_sel_U_synt, tRNA 2-selenouridine s	0.002

>gnl|CDD|177819 PLN02160, PLN02160, thiosulfate sulfurtransferase

 Score = 97.1 bits (241), Expect = 3e-26
 Identities = 50/111 (45%), Positives = 69/111 (62%), Gaps = 3/111 (2%)

Query: 74  SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA--INVPYMYRVGSGMTKNLKFVEEVS 131
           SV V  A  LLQ+GH+YLDVRT +EF  GH   A  +N+PYM     G  KN +F+E+VS
Sbjct: 16  SVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVS 75

Query: 132 TRFRKHDEI-IGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT 181
           +     D+I +GCQSG RS+ A T+L+ AG+  + +  GG+ AW  +  P 
Sbjct: 76  SLLNPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYLAWVDHSFPI 126

Length = 136

>gnl|CDD|197731 smart00450, RHOD, Rhodanese Homology Domain

 Score = 77.9 bits (192), Expect = 3e-19
 Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 3/99 (3%)

Query: 85  QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVG-SGMTKNLKFVEEVSTRFRKHDE--II 141
                 LDVR+PEE+  GH  GA+N+P    +   G    L+F E +       D+  ++
Sbjct: 2   DEKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVVV 61

Query: 142 GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLP 180
            C+SG RS  AA  L   GF  +  + GG+  W   G P
Sbjct: 62  YCRSGNRSAKAAWLLRELGFKNVYLLDGGYKEWSAAGPP 100

An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions. Length = 100

>gnl|CDD|238089 cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein

 Score = 73.1 bits (180), Expect = 1e-17
 Identities = 35/98 (35%), Positives = 45/98 (45%), Gaps = 12/98 (12%)

Query: 80  AHELL-QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHD 138
             ELL       LDVR PEE++AGH  GAIN+P            L+          K  
Sbjct: 2   LKELLDDEDAVLLDVREPEEYAAGHIPGAINIPLS---------ELEE-RAALLELDKDK 51

Query: 139 EII-GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWR 175
            I+  C+SG RS  AA  L  AG   + ++ GG  AW+
Sbjct: 52  PIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGMLAWK 89

The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins. Length = 89

>gnl|CDD|216005 pfam00581, Rhodanese, Rhodanese-like domain

 Score = 70.6 bits (173), Expect = 2e-16
 Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 9/92 (9%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRS 149
           +DVR+PEE++ GH  GA+N+P        +   L   EE+  +  K   I+  C SG RS
Sbjct: 17  IDVRSPEEYAKGHIPGAVNIPLSLPSLDKLESEL---EELGKKLDKDKTIVVYCASGNRS 73

Query: 150 MMAATDLL-----NAGFAGITDIAGGFAAWRQ 176
             AA  LL       G+  +  + GGF AW+ 
Sbjct: 74  GQAAALLLALILKALGYKNVYVLDGGFEAWKA 105

Rhodanese has an internal duplication. This Pfam represents a single copy of this duplicated domain. The domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases. Length = 106

>gnl|CDD|223680 COG0607, PspE, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

 Score = 69.6 bits (170), Expect = 7e-16
 Identities = 36/112 (32%), Positives = 47/112 (41%), Gaps = 10/112 (8%)

Query: 73  TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATG-AINVPYMYRVGSGMTKNLKFVEEVS 131
           T      A  L       LDVR PEE+  GH  G AIN+P      +     L   + + 
Sbjct: 6   TISEDEAALLLAGEDAVLLDVREPEEYERGHIPGAAINIPLSELKAAENLLELPDDDPI- 64

Query: 132 TRFRKHDEIIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 183
                   ++ C SG RS  AA  L  AGF  + ++ GG  AW+  GLP   
Sbjct: 65  --------VVYCASGVRSAAAAAALKLAGFTNVYNLDGGIDAWKGAGLPLVR 108

Length = 110

>gnl|CDD|236337 PRK08762, PRK08762, molybdopterin biosynthesis protein MoeB; Validated

 Score = 73.5 bits (181), Expect = 8e-16
 Identities = 35/107 (32%), Positives = 47/107 (43%), Gaps = 15/107 (14%)

Query: 80  AHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVE-EVSTRFRKHD 138
           A      G   +DVR   E ++G A GA+ +P              F+E  + T     D
Sbjct: 10  ARARAAQGAVLIDVREAHERASGQAEGALRIPR------------GFLELRIETHLPDRD 57

Query: 139 EIIG--CQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 183
             I   C SG RS  AA  L   G+  +  +AGGF+AW+  GLP E 
Sbjct: 58  REIVLICASGTRSAHAAATLRELGYTRVASVAGGFSAWKDAGLPLER 104

Length = 376

>gnl|CDD|238780 cd01522, RHOD_1, Member of the Rhodanese Homology Domain superfamily, subgroup 1

 Score = 56.6 bits (137), Expect = 6e-11
 Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 12/108 (11%)

Query: 80  AHELLQAGHR--YLDVRTPEEFSA-GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRK 136
           A  LLQA  +   +DVRT  E+   G    A++V +  +V   M  N  F+ E+  +  K
Sbjct: 6   AWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAW--QVYPDMEINPNFLAELEEKVGK 63

Query: 137 HDEIIG-CQSGKRSMMAATDLLNAGFAGITDIAGGF------AAWRQN 177
              ++  C+SG RS+ AA     AGF  + ++  GF      A  R  
Sbjct: 64  DRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFEGDLDAAGHRGG 111

This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins. Length = 117

>gnl|CDD|238782 cd01524, RHOD_Pyr_redox, Member of the Rhodanese Homology Domain superfamily

 Score = 50.0 bits (120), Expect = 1e-08
 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 20/88 (22%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDE----IIGCQSG 146
           +DVRTP+EF  GH  GAIN+P               ++E+  R  +  +    I+ C  G
Sbjct: 17  IDVRTPQEFEKGHIKGAINIP---------------LDELRDRLNELPKDKEIIVYCAVG 61

Query: 147 KRSMMAATDLLNAGFAGITDIAGGFAAW 174
            R  +AA  L   GF  + ++ GG+  +
Sbjct: 62  LRGYIAARILTQNGFK-VKNLDGGYKTY 88

Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain. Length = 90

>gnl|CDD|238786 cd01528, RHOD_2, Member of the Rhodanese Homology Domain superfamily, subgroup 2

 Score = 50.1 bits (120), Expect = 1e-08
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 8/86 (9%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIGCQSGKRSM 150
           +DVR PEE       G +++P        M++  +  +E+ +     D ++ C  G RSM
Sbjct: 21  IDVREPEELEIAFLPGFLHLP--------MSEIPERSKELDSDNPDKDIVVLCHHGGRSM 72

Query: 151 MAATDLLNAGFAGITDIAGGFAAWRQ 176
             A  LL  GF  + ++ GG  AW  
Sbjct: 73  QVAQWLLRQGFENVYNLQGGIDAWSL 98

Subgroup 2 includes uncharacterized putative rhodanese-related domains. Length = 101

>gnl|CDD|235526 PRK05597, PRK05597, molybdopterin biosynthesis protein MoeB; Validated

 Score = 51.8 bits (124), Expect = 3e-08
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 9/89 (10%)

Query: 87  GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIGCQSG 146
           G   +DVR P EF+A    GA NVP           ++   +EV         ++ C +G
Sbjct: 274 GVTLIDVREPSEFAAYSIPGAHNVPLSAIREGANPPSVSAGDEV---------VVYCAAG 324

Query: 147 KRSMMAATDLLNAGFAGITDIAGGFAAWR 175
            RS  A   L  AG+ G++ + GG   W 
Sbjct: 325 VRSAQAVAILERAGYTGMSSLDGGIEGWL 353

Length = 355

>gnl|CDD|238785 cd01527, RHOD_YgaP, Member of the Rhodanese Homology Domain superfamily

 Score = 47.5 bits (113), Expect = 9e-08
 Identities = 34/111 (30%), Positives = 47/111 (42%), Gaps = 15/111 (13%)

Query: 73  TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST 132
           T++    A ELL  G   +D+R P+E+      GA  VP            L  +E    
Sbjct: 2   TTISPNDACELLAQGAVLVDIREPDEYLRERIPGARLVP------------LSQLESEGL 49

Query: 133 RFRKHDEII-GCQSGKRSMMAATDLLNAGFAG-ITDIAGGFAAWRQNGLPT 181
                + II  C+SG R+   A + L A  AG    + GG  AW+  GLP 
Sbjct: 50  PLVGANAIIFHCRSGMRTQQNA-ERLAAISAGEAYVLEGGLDAWKAAGLPV 99

This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases. Length = 99

>gnl|CDD|178908 PRK00162, glpE, thiosulfate sulfurtransferase; Validated

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 20/111 (18%)

Query: 75  VPVRVAHELL-QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR 133
           + V  AH+ L + G   +D+R P+ F+ GHA GA ++            N    + +   
Sbjct: 7   INVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGAFHL-----------TN----DSLGAF 51

Query: 134 FRKHD----EIIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLP 180
            R+ D     ++ C  G  S  AA  LL  GF  +  I GGF AWR+    
Sbjct: 52  MRQADFDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPA 102

Length = 108

>gnl|CDD|238784 cd01526, RHOD_ThiF, Member of the Rhodanese Homology Domain superfamily

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 35/108 (32%), Positives = 46/108 (42%), Gaps = 10/108 (9%)

Query: 82  ELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKN--LKFVEEVSTRFRKH 137
            +LQAG  H  LDVR    F       AIN+P    +   ++K   LK ++E+     K 
Sbjct: 17  NILQAGKKHVLLDVRPKVHFEICRLPEAINIP----LSELLSKAAELKSLQELPLDNDKD 72

Query: 138 DEI-IGCQSGKRSMMAATDLLNAG-FAGITDIAGGFAAWRQNGLPTEP 183
             I + C+ G  S  A   L   G    + DI GG  AW     PT P
Sbjct: 73  SPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKAWADKVDPTFP 120

This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains. Length = 122

>gnl|CDD|238777 cd01519, RHOD_HSP67B2, Member of the Rhodanese Homology Domain superfamily

 Score = 46.5 bits (111), Expect = 3e-07
 Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 18/93 (19%)

Query: 92  DVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKH---------DEII- 141
           DVR PEE   G   GAIN+P      S +   L   EE    F K           E+I 
Sbjct: 20  DVREPEELKTGKIPGAINIPL-----SSLPDALALSEE---EFEKKYGFPKPSKDKELIF 71

Query: 142 GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAW 174
            C++G RS  AA    + G+  + +  G +  W
Sbjct: 72  YCKAGVRSKAAAELARSLGYENVGNYPGSWLDW 104

This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized. Length = 106

>gnl|CDD|238787 cd01529, 4RHOD_Repeats, Member of the Rhodanese Homology Domain superfamily

 Score = 45.7 bits (108), Expect = 5e-07
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 5/89 (5%)

Query: 87  GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIGCQSG 146
           G   LDVR  +E++AGH  G  ++P    V              +TR+     ++ C   
Sbjct: 12  GTALLDVRAEDEYAAGHLPGKRSIPGAALVLRSQELQALEAPGRATRY-----VLTCDGS 66

Query: 147 KRSMMAATDLLNAGFAGITDIAGGFAAWR 175
             +  AA +LL  G   +  + GG +AW 
Sbjct: 67  LLARFAAQELLALGGKPVALLDGGTSAWV 95

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats. Length = 96

>gnl|CDD|180967 PRK07411, PRK07411, hypothetical protein; Validated

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 35/111 (31%), Positives = 46/111 (41%), Gaps = 12/111 (10%)

Query: 77  VRVAHELLQAGHR---YLDVRTPEEFSAGHATGAINVPYM-YRVGSGMTKNLKFVEEVST 132
           V     LL +G      +DVR P E+      G++ VP      G G       VE+V  
Sbjct: 286 VTELKALLDSGADDFVLIDVRNPNEYEIARIPGSVLVPLPDIENGPG-------VEKVKE 338

Query: 133 RFRKHDEIIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 183
               H  I  C+ G RS  A   L  AG  G T++ GG  AW +   P+ P
Sbjct: 339 LLNGHRLIAHCKMGGRSAKALGILKEAGIEG-TNVKGGITAWSREVDPSVP 388

Length = 390

>gnl|CDD|182356 PRK10287, PRK10287, thiosulfate:cyanide sulfurtransferase; Provisional

 Score = 44.1 bits (104), Expect = 2e-06
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 26/115 (22%)

Query: 62  LRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMT 121
            +  L A+ +  S+P       + A   ++DVR PE++   H  GAIN+P          
Sbjct: 2   FKKGLLALALVFSLP-------VFAAEHWIDVRVPEQYQQEHVQGAINIPL--------- 45

Query: 122 KNLKFVEEVSTRFR-KHDEI-IGCQSGKRSMMAATDLLNAGF------AGITDIA 168
           K +K  E ++T    K+D + + C +G++S  A   L   G+       G+ DIA
Sbjct: 46  KEVK--ERIATAVPDKNDTVKLYCNAGRQSGQAKEILSEMGYTHAENAGGLKDIA 98

Length = 104

>gnl|CDD|132026 TIGR02981, phageshock_pspE, phage shock operon rhodanese PspE

 Score = 42.3 bits (99), Expect = 9e-06
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 27/97 (27%)

Query: 84  LQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-----KHD 138
           L A   ++DVR PE++   H  GAIN+P               ++E+          K+D
Sbjct: 15  LFAAEHWIDVRIPEQYQQEHIQGAINIP---------------LKEIKEHIATAVPDKND 59

Query: 139 EI-IGCQSGKRSMMAATDLLNAGF------AGITDIA 168
            + + C +G++S MA   LL+ G+       GI DIA
Sbjct: 60  TVKLYCNAGRQSGMAKDILLDMGYTHAENAGGIKDIA 96

Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely. Length = 101

>gnl|CDD|238724 cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain

 Score = 40.9 bits (96), Expect = 3e-05
 Identities = 31/112 (27%), Positives = 43/112 (38%), Gaps = 20/112 (17%)

Query: 76  PVRVAHELLQAGHRYLDVRTPEEFSA-GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF 134
           P      L   G   +DVR P E    G   GA + P       GM   L+F  +  + +
Sbjct: 3   PEDARALLGSPGVLLVDVRDPRELERTGMIPGAFHAP------RGM---LEFWADPDSPY 53

Query: 135 RKHDEIIG--------CQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNG 178
             H             C SG RS +A   L + G   + +I GGF  W++ G
Sbjct: 54  --HKPAFAEDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFKDWKEAG 103

This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins. Length = 103

>gnl|CDD|238721 cd01444, GlpE_ST, GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily

 Score = 40.3 bits (95), Expect = 5e-05
 Identities = 31/100 (31%), Positives = 41/100 (41%), Gaps = 15/100 (15%)

Query: 80  AHELLQAGHR--YLDVRTPEEFSA--GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR 135
             ELL AG     LDVR P  ++A   H  GAI++                 + +    R
Sbjct: 7   LAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHL-----------DEDSLDDWLGDLDR 55

Query: 136 KHDEIIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWR 175
               ++ C  G  S   A  L  AGF  +  +AGGF AWR
Sbjct: 56  DRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFEAWR 95

Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine. Length = 96

>gnl|CDD|236982 PRK11784, PRK11784, tRNA 2-selenouridine synthase; Provisional

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 82  ELLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113
            L       +DVR+P EF+ GH  GAIN+P +
Sbjct: 10  ALFLNDTPLIDVRSPIEFAEGHIPGAINLPLL 41

Length = 345

>gnl|CDD|225450 COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 31/113 (27%), Positives = 43/113 (38%), Gaps = 25/113 (22%)

Query: 91  LDVRTPEEFS----------AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKH--- 137
           +D R+PE F           AGH  GAIN+P+   V  G     K  EE++  +      
Sbjct: 175 IDARSPERFRGKEPEPRDGKAGHIPGAINIPWTDLVDDGGLF--KSPEEIARLYADAGID 232

Query: 138 --DEII-GCQSGKRSMMAATDLLNAGFAGITDI---AGGFAAWRQ-NGLPTEP 183
              E+I  C SG R   A+   L     G  +     G ++ W      P E 
Sbjct: 233 PDKEVIVYCGSGVR---ASVTWLALAELGGPNNRLYDGSWSEWGSDPDRPVET 282

Length = 285

>gnl|CDD|238726 cd01449, TST_Repeat_2, Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain

 Score = 38.0 bits (89), Expect = 4e-04
 Identities = 26/108 (24%), Positives = 39/108 (36%), Gaps = 29/108 (26%)

Query: 91  LDVRTPEEFS-----------AGHATGAINVPYMYRVGSGMT--KNLKFVEEVSTRFRKH 137
           +D R+PE F            +GH  GA+N+P+     S +      K  EE+   F   
Sbjct: 18  VDARSPERFRGEVPEPRPGLRSGHIPGAVNIPW----TSLLDEDGTFKSPEELRALFAAL 73

Query: 138 -----DEIIG-CQSGKRSMMAATDLLNAGFAGITDIA---GGFAAWRQ 176
                  +I  C SG     A   LL     G  ++    G ++ W  
Sbjct: 74  GITPDKPVIVYCGSGVT---ACVLLLALELLGYKNVRLYDGSWSEWGS 118

TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue. Length = 118

>gnl|CDD|181156 PRK07878, PRK07878, molybdopterin biosynthesis-like protein MoeZ; Validated

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 36/131 (27%), Positives = 54/131 (41%), Gaps = 15/131 (11%)

Query: 56  FCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRY--LDVRTPEEFSAGHATGAINVPYM 113
           FC   S      A G  +++  R   E L +G +   +DVR P E+   H  GA  +P  
Sbjct: 272 FCGVVSDEAQQAAAG--STITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQLIP-- 327

Query: 114 YRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGFA 172
                   K+     E   +  +   I+  C++G RS  A   L  AGF+    + GG  
Sbjct: 328 --------KSEILSGEALAKLPQDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVV 379

Query: 173 AWRQNGLPTEP 183
           AW +   P+ P
Sbjct: 380 AWAKQVDPSLP 390

Length = 392

>gnl|CDD|238792 cd01534, 4RHOD_Repeat_3, Member of the Rhodanese Homology Domain superfamily, repeat 3

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 91  LDVRTPEEFSAGHATGAINVP 111
            DVRTPEE+ AGH  G  + P
Sbjct: 20  FDVRTPEEYEAGHLPGFRHTP 40

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue. Length = 95

>gnl|CDD|238778 cd01520, RHOD_YbbB, Member of the Rhodanese Homology Domain superfamily

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 26/120 (21%)

Query: 82  ELLQAGHRYLDVRTPEEFSAGHATGAINVPYM-----YRVG----------------SGM 120
            L +A    +DVR+P+EF  GH  GAIN+P +       VG                  +
Sbjct: 8   ALRKADGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELV 67

Query: 121 TKNLK-FVEEVSTRFRKHDE--IIGC-QSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ 176
           +  LK  + E      + D   +I C + G RS   A  L + G   +  + GG+ A+R+
Sbjct: 68  SGKLKRILNEAWEARLERDPKLLIYCARGGMRSQSLAWLLESLGID-VPLLEGGYKAYRK 126

This CD includes several putative ATP /GTP binding proteins including E. coli YbbB. Length = 128

>gnl|CDD|234132 TIGR03167, tRNA_sel_U_synt, tRNA 2-selenouridine synthase

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 25/110 (22%)

Query: 91  LDVRTPEEFSAGHATGAINVPYM-----------Y-RVGSGMTKNL----------KFVE 128
           +DVR+P EF+ GH  GAIN+P +           Y +VG      L            VE
Sbjct: 6   IDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVE 65

Query: 129 EVSTRFRKHDEI-IGC-QSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ 176
           +         +  + C + G RS   A  L   GF  +  + GG+ A+R+
Sbjct: 66  QWRAFADGPPQPLLYCWRGGMRSGSLAWLLAQIGFR-VPRLEGGYKAYRR 114

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene [Protein synthesis, tRNA and rRNA base modification]. Length = 311

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	183
PLN02160	136	thiosulfate sulfurtransferase	99.93
KOG1530	136	consensus Rhodanese-related sulfurtransferase [Ino	99.92
cd01527	99	RHOD_YgaP Member of the Rhodanese Homology Domain	99.91
cd01533	109	4RHOD_Repeat_2 Member of the Rhodanese Homology Do	99.91
PRK00162	108	glpE thiosulfate sulfurtransferase; Validated	99.9
cd01518	101	RHOD_YceA Member of the Rhodanese Homology Domain	99.9
cd01521	110	RHOD_PspE2 Member of the Rhodanese Homology Domain	99.88
cd01524	90	RHOD_Pyr_redox Member of the Rhodanese Homology Do	99.88
cd01523	100	RHOD_Lact_B Member of the Rhodanese Homology Domai	99.88
cd01520	128	RHOD_YbbB Member of the Rhodanese Homology Domain	99.88
cd01519	106	RHOD_HSP67B2 Member of the Rhodanese Homology Doma	99.88
cd01526	122	RHOD_ThiF Member of the Rhodanese Homology Domain	99.87
cd01528	101	RHOD_2 Member of the Rhodanese Homology Domain sup	99.87
cd01534	95	4RHOD_Repeat_3 Member of the Rhodanese Homology Do	99.87
cd01444	96	GlpE_ST GlpE sulfurtransferase (ST) and homologs a	99.87
PRK11493	281	sseA 3-mercaptopyruvate sulfurtransferase; Provisi	99.87
TIGR03865	162	PQQ_CXXCW PQQ-dependent catabolism-associated CXXC	99.87
cd01447	103	Polysulfide_ST Polysulfide-sulfurtransferase - Rho	99.87
cd01448	122	TST_Repeat_1 Thiosulfate sulfurtransferase (TST),	99.86
cd01535	145	4RHOD_Repeat_4 Member of the Rhodanese Homology Do	99.86
cd01525	105	RHOD_Kc Member of the Rhodanese Homology Domain su	99.86
cd01449	118	TST_Repeat_2 Thiosulfate sulfurtransferase (TST),	99.86
PLN02723	320	3-mercaptopyruvate sulfurtransferase	99.86
cd01530	121	Cdc25 Cdc25 phosphatases are members of the Rhodan	99.86
cd01522	117	RHOD_1 Member of the Rhodanese Homology Domain sup	99.85
cd01529	96	4RHOD_Repeats Member of the Rhodanese Homology Dom	99.85
COG2897	285	SseA Rhodanese-related sulfurtransferase [Inorgani	99.85
smart00450	100	RHOD Rhodanese Homology Domain. An alpha beta fold	99.85
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	99.84
PF00581	113	Rhodanese: Rhodanese-like domain This Prosite entr	99.84
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	99.84
PRK09629	610	bifunctional thiosulfate sulfurtransferase/phospha	99.83
cd01532	92	4RHOD_Repeat_1 Member of the Rhodanese Homology Do	99.83
cd01445	138	TST_Repeats Thiosulfate sulfurtransferases (TST) c	99.82
PRK11493	281	sseA 3-mercaptopyruvate sulfurtransferase; Provisi	99.82
PRK01415	247	hypothetical protein; Validated	99.81
PRK07411	390	hypothetical protein; Validated	99.81
PRK09629	610	bifunctional thiosulfate sulfurtransferase/phospha	99.81
PRK05320	257	rhodanese superfamily protein; Provisional	99.81
PLN02723	320	3-mercaptopyruvate sulfurtransferase	99.81
COG0607	110	PspE Rhodanese-related sulfurtransferase [Inorgani	99.8
cd00158	89	RHOD Rhodanese Homology Domain (RHOD); an alpha be	99.8
TIGR02981	101	phageshock_pspE phage shock operon rhodanese PspE.	99.8
PRK10287	104	thiosulfate:cyanide sulfurtransferase; Provisional	99.79
cd01531	113	Acr2p Eukaryotic arsenate resistance proteins are	99.79
PRK00142	314	putative rhodanese-related sulfurtransferase; Prov	99.78
cd01443	113	Cdc25_Acr2p Cdc25 enzymes are members of the Rhoda	99.76
PRK11784	345	tRNA 2-selenouridine synthase; Provisional	99.74
TIGR03167	311	tRNA_sel_U_synt tRNA 2-selenouridine synthase. The	99.73
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	99.73
COG2897	285	SseA Rhodanese-related sulfurtransferase [Inorgani	99.73
cd01446	132	DSP_MapKP N-terminal regulatory rhodanese domain o	99.69
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	99.67
KOG2017	427	consensus Molybdopterin synthase sulfurylase [Coen	99.54
COG1054	308	Predicted sulfurtransferase [General function pred	99.5
PRK01269	482	tRNA s(4)U8 sulfurtransferase; Provisional	99.49
KOG3772	325	consensus M-phase inducer phosphatase [Cell cycle	99.35
KOG1529	286	consensus Mercaptopyruvate sulfurtransferase/thios	99.33
KOG1529	286	consensus Mercaptopyruvate sulfurtransferase/thios	99.3
COG5105	427	MIH1 Mitotic inducer, protein phosphatase [Cell di	98.64
COG2603	334	Predicted ATPase [General function prediction only	97.44
PF04273	110	DUF442: Putative phosphatase (DUF442); InterPro: I	96.8
TIGR01244	135	conserved hypothetical protein TIGR01244. No membe	96.7
KOG1093	725	consensus Predicted protein kinase (contains TBC a	95.72
PRK00142	314	putative rhodanese-related sulfurtransferase; Prov	95.65
KOG3636	669	consensus Uncharacterized conserved protein, conta	94.6
COG3453	130	Uncharacterized protein conserved in bacteria [Fun	93.97
TIGR03167	311	tRNA_sel_U_synt tRNA 2-selenouridine synthase. The	93.35
KOG1717	343	consensus Dual specificity phosphatase [Defense me	92.38
cd00127	139	DSPc Dual specificity phosphatases (DSP); Ser/Thr	90.66
PLN02727	986	NAD kinase	88.99
smart00195	138	DSPc Dual specificity phosphatase, catalytic domai	88.52
PF13350	164	Y_phosphatase3: Tyrosine phosphatase family; PDB:	87.65
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	82.5

>PLN02160 thiosulfate sulfurtransferase

Probab=99.93  E-value=7.7e-25  Score=158.57  Aligned_cols=112  Identities=45%  Similarity=0.816  Sum_probs=94.5

Q ss_pred             CccccHHHHHHHHhCCCEEEEcCCHHhHhcCCCCCc--EEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChH
Q 030091           72 PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA--INVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKR  148 (183)
Q Consensus        72 ~~~i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgA--i~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~  148 (183)
                      ...++++++.++++++.+|||||++.||..||||||  +|+|+......+.+...++...+...++++++|| ||.+|.|
T Consensus        14 ~~~i~~~e~~~~~~~~~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~~~l~~~~~~~~~~~~~~~~~~IivyC~sG~R   93 (136)
T PLN02160         14 VVSVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVSSLLNPADDILVGCQSGAR   93 (136)
T ss_pred             eeEeCHHHHHHHHhCCCEEEECCCHHHHhcCCCCCcceecccchhcCcccccCCHHHHHHHHhccCCCCcEEEECCCcHH
Confidence            456889999999887788999999999999999999  8999843333344445566555555567888999 9999999


Q ss_pred             HHHHHHHHHHcCCCCeeEecccHHHHHhCCCCCCC
Q 030091          149 SMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       149 s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      |..++..|...||++|++|.||+.+|.++|+|+++
T Consensus        94 S~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  128 (136)
T PLN02160         94 SLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQ  128 (136)
T ss_pred             HHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCccc
Confidence            99999999999999999999999999999999863

>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.92  E-value=1.4e-24  Score=151.66  Aligned_cols=114  Identities=41%  Similarity=0.707  Sum_probs=103.8

Q ss_pred             CCCCccccHHHHHHHHhCC-CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCC-CCeEE-EeCC
Q 030091           69 VGVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRK-HDEII-GCQS  145 (183)
Q Consensus        69 ~~~~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~-~~~iv-~C~~  145 (183)
                      ...+..++.++++++++.+ .++||||+++||..||+|.+||||+......+...+++|.+......++ ++.|| +|.+
T Consensus        19 ~~~~~sv~~~qvk~L~~~~~~~llDVRepeEfk~gh~~~siNiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~eiIf~C~S   98 (136)
T KOG1530|consen   19 ASNPQSVSVEQVKNLLQHPDVVLLDVREPEEFKQGHIPASINIPYMSRPGAGALKNPEFLKQVGSSKPPHDKEIIFGCAS   98 (136)
T ss_pred             cCCcEEEEHHHHHHHhcCCCEEEEeecCHHHhhccCCcceEeccccccccccccCCHHHHHHhcccCCCCCCcEEEEecc
Confidence            4566789999999999988 9999999999999999999999999877788888999999998877665 45899 9999


Q ss_pred             ChHHHHHHHHHHHcCCCCeeEecccHHHHHhCCCCCC
Q 030091          146 GKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       146 g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~  182 (183)
                      |.||..|...|...||+||.+|.|||.+|.+.+.|..
T Consensus        99 G~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~~  135 (136)
T KOG1530|consen   99 GVRSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPKK  135 (136)
T ss_pred             CcchhHHHHHHHHcCcccccccCccHHHHHHccCCCC
Confidence            9999999999999999999999999999999988764

>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily

Probab=99.91  E-value=5e-24  Score=145.98  Aligned_cols=97  Identities=31%  Similarity=0.493  Sum_probs=84.6

Q ss_pred             ccccHHHHHHHHhCCCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChHHHH
Q 030091           73 TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSMM  151 (183)
Q Consensus        73 ~~i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~s~~  151 (183)
                      ..++++++.++++.+.+|||+|+++||..+|||||+|+|+.            .+......++++++|| ||++|.++..
T Consensus         2 ~~i~~~el~~~~~~~~~liDvR~~~e~~~~hi~ga~~ip~~------------~~~~~~~~~~~~~~iv~~c~~g~~s~~   69 (99)
T cd01527           2 TTISPNDACELLAQGAVLVDIREPDEYLRERIPGARLVPLS------------QLESEGLPLVGANAIIFHCRSGMRTQQ   69 (99)
T ss_pred             CccCHHHHHHHHHCCCEEEECCCHHHHHhCcCCCCEECChh------------HhcccccCCCCCCcEEEEeCCCchHHH
Confidence            35788999998888899999999999999999999999984            1222222367888999 9999999999


Q ss_pred             HHHHHHHcCCCCeeEecccHHHHHhCCCCC
Q 030091          152 AATDLLNAGFAGITDIAGGFAAWRQNGLPT  181 (183)
Q Consensus       152 aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv  181 (183)
                      ++..|.++||++|++|+||+.+|...|+|+
T Consensus        70 ~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~   99 (99)
T cd01527          70 NAERLAAISAGEAYVLEGGLDAWKAAGLPV   99 (99)
T ss_pred             HHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence            999999999999999999999999999875

This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.

>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2

Probab=99.91  E-value=1.3e-23  Score=146.56  Aligned_cols=97  Identities=23%  Similarity=0.363  Sum_probs=82.3

Q ss_pred             CCCccccHHHHHHHHhCC--CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcC--CCCCeEE-EeC
Q 030091           70 GVPTSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEII-GCQ  144 (183)
Q Consensus        70 ~~~~~i~~~~~~~~~~~~--~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i--~~~~~iv-~C~  144 (183)
                      .....++++++.++++++  .+|||||++.||..||||||+|+|+.            .+......+  +++++|| ||.
T Consensus         7 ~~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgainip~~------------~l~~~~~~l~~~~~~~ivv~C~   74 (109)
T cd01533           7 RHTPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSVSCPGA------------ELVLRVGELAPDPRTPIVVNCA   74 (109)
T ss_pred             ccCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCceeCCHH------------HHHHHHHhcCCCCCCeEEEECC
Confidence            344578999999988754  68999999999999999999999993            333444444  4567899 999


Q ss_pred             CChHHHHHHHHHHHcCCCC-eeEecccHHHHHhCC
Q 030091          145 SGKRSMMAATDLLNAGFAG-ITDIAGGFAAWRQNG  178 (183)
Q Consensus       145 ~g~~s~~aa~~L~~~G~~~-v~~l~GG~~~W~~~g  178 (183)
                      +|.||..+++.|+..||+| |++|+||+.+|..+|
T Consensus        75 ~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g  109 (109)
T cd01533          75 GRTRSIIGAQSLINAGLPNPVAALRNGTQGWTLAG  109 (109)
T ss_pred             CCchHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence            9999999999999999998 899999999999875

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.

>PRK00162 glpE thiosulfate sulfurtransferase; Validated

Probab=99.90  E-value=2.2e-23  Score=145.11  Aligned_cols=99  Identities=31%  Similarity=0.495  Sum_probs=87.9

Q ss_pred             CccccHHHHHHHHhC-CCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChHH
Q 030091           72 PTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRS  149 (183)
Q Consensus        72 ~~~i~~~~~~~~~~~-~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~s  149 (183)
                      .+.++++++.+.++. +.+|||+|++.||..||||||+|+|+            ..+......++++++|+ ||.+|.+|
T Consensus         4 ~~~is~~el~~~l~~~~~~ivDvR~~~e~~~ghi~gA~~ip~------------~~l~~~~~~~~~~~~ivv~c~~g~~s   71 (108)
T PRK00162          4 FECINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGAFHLTN------------DSLGAFMRQADFDTPVMVMCYHGNSS   71 (108)
T ss_pred             ccccCHHHHHHHHHcCCCEEEEcCCHHHHhcCCCCCCeECCH------------HHHHHHHHhcCCCCCEEEEeCCCCCH
Confidence            456889999998864 58999999999999999999999998            34445556688889999 99999999


Q ss_pred             HHHHHHHHHcCCCCeeEecccHHHHHhCCCCCC
Q 030091          150 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       150 ~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~  182 (183)
                      ..++..|++.||+||++++||+.+|.+.++|++
T Consensus        72 ~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~  104 (108)
T PRK00162         72 QGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEV  104 (108)
T ss_pred             HHHHHHHHHCCchheEEecCCHHHHHhcCCCcc
Confidence            999999999999999999999999999999986

>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily

Probab=99.90  E-value=9.9e-24  Score=145.14  Aligned_cols=97  Identities=25%  Similarity=0.335  Sum_probs=77.9

Q ss_pred             cccHHHHHHHHhCC-CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChHHHH
Q 030091           74 SVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSMM  151 (183)
Q Consensus        74 ~i~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~s~~  151 (183)
                      .++++++.++++++ .+|||||++.||..||||||+|+|+..+.     ...+.+... ..++++++|| ||.+|.||..
T Consensus         3 ~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~-----~~~~~~~~~-~~~~~~~~ivvyC~~G~rs~~   76 (101)
T cd01518           3 YLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKGAVNPDVDTFR-----EFPFWLDEN-LDLLKGKKVLMYCTGGIRCEK   76 (101)
T ss_pred             cCCHHHHHHHHcCCCEEEEEcCChhhhhcCEeccccCCCcccHh-----HhHHHHHhh-hhhcCCCEEEEECCCchhHHH
Confidence            57888998888754 89999999999999999999999985211     001111111 1247888999 9999999999


Q ss_pred             HHHHHHHcCCCCeeEecccHHHHHh
Q 030091          152 AATDLLNAGFAGITDIAGGFAAWRQ  176 (183)
Q Consensus       152 aa~~L~~~G~~~v~~l~GG~~~W~~  176 (183)
                      ++..|..+||++|++|+||+.+|.+
T Consensus        77 a~~~L~~~G~~~v~~l~GG~~~W~~  101 (101)
T cd01518          77 ASAYLKERGFKNVYQLKGGILKYLE  101 (101)
T ss_pred             HHHHHHHhCCcceeeechhHHHHhC
Confidence            9999999999999999999999963

This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.

>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily

Probab=99.88  E-value=3e-22  Score=139.89  Aligned_cols=97  Identities=27%  Similarity=0.521  Sum_probs=83.0

Q ss_pred             ccccHHHHHHHHhCC---CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCC--
Q 030091           73 TSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSG--  146 (183)
Q Consensus        73 ~~i~~~~~~~~~~~~---~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g--  146 (183)
                      ..++++++.++++.+   .+|||+|++.+|..||||||+|+|..           .+..+....++++++|| ||++|  
T Consensus         8 ~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~-----------~l~~~~~~~i~~~~~vvvyc~~g~~   76 (110)
T cd01521           8 FETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAINLPHR-----------EICENATAKLDKEKLFVVYCDGPGC   76 (110)
T ss_pred             eecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCEeCCHH-----------HhhhHhhhcCCCCCeEEEEECCCCC
Confidence            468889999988753   79999999999999999999999984           22223455688899999 99987  


Q ss_pred             hHHHHHHHHHHHcCCCCeeEecccHHHHHhCCCCC
Q 030091          147 KRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT  181 (183)
Q Consensus       147 ~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv  181 (183)
                      .++..+++.|+++||+ |++|+||+.+|..+|+|+
T Consensus        77 ~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g~~~  110 (110)
T cd01521          77 NGATKAALKLAELGFP-VKEMIGGLDWWKREGYAT  110 (110)
T ss_pred             chHHHHHHHHHHcCCe-EEEecCCHHHHHHCCCCC
Confidence            4899999999999995 999999999999999885

This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.

>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily

Probab=99.88  E-value=3e-22  Score=134.99  Aligned_cols=88  Identities=34%  Similarity=0.587  Sum_probs=77.9

Q ss_pred             ccHHHHHHHHhCCCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChHHHHHH
Q 030091           75 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSMMAA  153 (183)
Q Consensus        75 i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~s~~aa  153 (183)
                      ++++++.+++.++.++||+|++++|..||||||+|+|..            .+......++++++|| ||.+|.++..++
T Consensus         1 ~~~~e~~~~~~~~~~iiD~R~~~~~~~~hipgA~~ip~~------------~~~~~~~~~~~~~~vvl~c~~g~~a~~~a   68 (90)
T cd01524           1 VQWHELDNYRADGVTLIDVRTPQEFEKGHIKGAINIPLD------------ELRDRLNELPKDKEIIVYCAVGLRGYIAA   68 (90)
T ss_pred             CCHHHHHHHhcCCCEEEECCCHHHHhcCCCCCCEeCCHH------------HHHHHHHhcCCCCcEEEEcCCChhHHHHH
Confidence            367888888877789999999999999999999999983            3444555678888999 999999999999


Q ss_pred             HHHHHcCCCCeeEecccHHHHH
Q 030091          154 TDLLNAGFAGITDIAGGFAAWR  175 (183)
Q Consensus       154 ~~L~~~G~~~v~~l~GG~~~W~  175 (183)
                      ..|++.|| +|++|+||+.+|.
T Consensus        69 ~~L~~~G~-~v~~l~GG~~~w~   89 (90)
T cd01524          69 RILTQNGF-KVKNLDGGYKTYS   89 (90)
T ss_pred             HHHHHCCC-CEEEecCCHHHhc
Confidence            99999999 8999999999996

Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.

>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily

Probab=99.88  E-value=2.2e-22  Score=138.08  Aligned_cols=96  Identities=25%  Similarity=0.376  Sum_probs=77.8

Q ss_pred             ccHHHHHHHHhCC--CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChHHHH
Q 030091           75 VPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSMM  151 (183)
Q Consensus        75 i~~~~~~~~~~~~--~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~s~~  151 (183)
                      |+++++.++++++  ++|||||++.||..||||||+|+|+......    ...........++++++|| ||.+|.+|..
T Consensus         1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~----~~~~~~~~~~~~~~~~~ivv~C~~G~rs~~   76 (100)
T cd01523           1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYFD----FLEIEEDILDQLPDDQEVTVICAKEGSSQF   76 (100)
T ss_pred             CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCcccccccchHH----HHHhhHHHHhhCCCCCeEEEEcCCCCcHHH
Confidence            4678888888764  7999999999999999999999998521100    0000133456678899999 9999999999


Q ss_pred             HHHHHHHcCCCCeeEecccHHHHH
Q 030091          152 AATDLLNAGFAGITDIAGGFAAWR  175 (183)
Q Consensus       152 aa~~L~~~G~~~v~~l~GG~~~W~  175 (183)
                      ++..|++.||+ +++|.||+.+|.
T Consensus        77 aa~~L~~~G~~-~~~l~GG~~~W~   99 (100)
T cd01523          77 VAELLAERGYD-VDYLAGGMKAWS   99 (100)
T ss_pred             HHHHHHHcCce-eEEeCCcHHhhc
Confidence            99999999998 999999999996

This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.

>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily

Probab=99.88  E-value=2.6e-22  Score=143.88  Aligned_cols=101  Identities=29%  Similarity=0.479  Sum_probs=78.4

Q ss_pred             ccHHHHHHHHhCCCEEEEcCCHHhHhcCCCCCcEEeccccccCCCC----C------------------CCHHHHHHHh-
Q 030091           75 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGM----T------------------KNLKFVEEVS-  131 (183)
Q Consensus        75 i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~----~------------------~~~~~~~~~~-  131 (183)
                      |+++++.++++++.+|||||++.||..||||||+|||+........    .                  ..+.++.... 
T Consensus         1 ~s~~el~~~l~~~~~iiDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (128)
T cd01520           1 ITAEDLLALRKADGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELVSGKLKRILNEAWE   80 (128)
T ss_pred             CCHHHHHHHHhcCCEEEECCCHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            5788999888877899999999999999999999999953221000    0                  0011222221 


Q ss_pred             hcCCCCCeEE-EeC-CChHHHHHHHHHHHcCCCCeeEecccHHHHHh
Q 030091          132 TRFRKHDEII-GCQ-SGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ  176 (183)
Q Consensus       132 ~~i~~~~~iv-~C~-~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~  176 (183)
                      ..++++++|| ||+ +|.||..+++.|+.+|| +|++|+||+.+|..
T Consensus        81 ~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~  126 (128)
T cd01520          81 ARLERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRK  126 (128)
T ss_pred             hccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence            3588899999 997 68999999999999999 59999999999975

This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.

>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily

Probab=99.88  E-value=2.1e-22  Score=139.30  Aligned_cols=100  Identities=26%  Similarity=0.382  Sum_probs=79.4

Q ss_pred             cHHHHHHHHh-C-CCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhc--CCCCCeEE-EeCCChHHH
Q 030091           76 PVRVAHELLQ-A-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEII-GCQSGKRSM  150 (183)
Q Consensus        76 ~~~~~~~~~~-~-~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~--i~~~~~iv-~C~~g~~s~  150 (183)
                      +++++.++++ . +.+|||+|++.||..||||||+|+|+....... ...++.+...+..  ++++++|| ||.+|.+|.
T Consensus         2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~s~   80 (106)
T cd01519           2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAINIPLSSLPDAL-ALSEEEFEKKYGFPKPSKDKELIFYCKAGVRSK   80 (106)
T ss_pred             cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcEEechHHhhhhh-CCCHHHHHHHhcccCCCCCCeEEEECCCcHHHH
Confidence            4677778776 4 489999999999999999999999986432221 2233334444433  45688999 999999999


Q ss_pred             HHHHHHHHcCCCCeeEecccHHHHHh
Q 030091          151 MAATDLLNAGFAGITDIAGGFAAWRQ  176 (183)
Q Consensus       151 ~aa~~L~~~G~~~v~~l~GG~~~W~~  176 (183)
                      .+++.|..+||+||++|+||+.+|.+
T Consensus        81 ~~~~~l~~~G~~~v~~~~Gg~~~W~~  106 (106)
T cd01519          81 AAAELARSLGYENVGNYPGSWLDWAA  106 (106)
T ss_pred             HHHHHHHHcCCccceecCCcHHHHcC
Confidence            99999999999999999999999963

This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.

>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily

Probab=99.87  E-value=6.6e-22  Score=140.63  Aligned_cols=106  Identities=28%  Similarity=0.390  Sum_probs=83.0

Q ss_pred             CCCccccHHHHHHHHhC--CCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHH---HhhcCCCCCeEE-Ee
Q 030091           70 GVPTSVPVRVAHELLQA--GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEE---VSTRFRKHDEII-GC  143 (183)
Q Consensus        70 ~~~~~i~~~~~~~~~~~--~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~---~~~~i~~~~~iv-~C  143 (183)
                      +....++++++.+++.+  +++|||+|++.||..||||||+|+|+......     ...+..   ....++++++|| ||
T Consensus         5 ~~~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~~-----~~~~~~~~~~~~~~~~~~~ivv~C   79 (122)
T cd01526           5 SPEERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAINIPLSELLSK-----AAELKSLQELPLDNDKDSPIYVVC   79 (122)
T ss_pred             CcccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCeEccHHHHhhh-----hhhhhhhhhcccccCCCCcEEEEC
Confidence            44567899999998875  37899999999999999999999998522100     000000   012247788999 99


Q ss_pred             CCChHHHHHHHHHHHcCC-CCeeEecccHHHHHhCCCC
Q 030091          144 QSGKRSMMAATDLLNAGF-AGITDIAGGFAAWRQNGLP  180 (183)
Q Consensus       144 ~~g~~s~~aa~~L~~~G~-~~v~~l~GG~~~W~~~g~p  180 (183)
                      ++|.+|..++..|+++|| ++|++|+||+.+|..+..+
T Consensus        80 ~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~  117 (122)
T cd01526          80 RRGNDSQTAVRKLKELGLERFVRDIIGGLKAWADKVDP  117 (122)
T ss_pred             CCCCcHHHHHHHHHHcCCccceeeecchHHHHHHHhCc
Confidence            999999999999999999 7899999999999987554

This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.

>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2

Probab=99.87  E-value=7.2e-22  Score=135.82  Aligned_cols=91  Identities=31%  Similarity=0.536  Sum_probs=76.8

Q ss_pred             ccHHHHHHHHhCC---CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcC---CCCCeEE-EeCCCh
Q 030091           75 VPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF---RKHDEII-GCQSGK  147 (183)
Q Consensus        75 i~~~~~~~~~~~~---~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i---~~~~~iv-~C~~g~  147 (183)
                      |+++++.+++..+   .+|||+|+++||..+|||||+|+|+.            .+......+   +++++|| ||++|.
T Consensus         2 i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~~ip~~------------~~~~~~~~~~~~~~~~~vv~~c~~g~   69 (101)
T cd01528           2 ISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFLHLPMS------------EIPERSKELDSDNPDKDIVVLCHHGG   69 (101)
T ss_pred             CCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCEecCHH------------HHHHHHHHhcccCCCCeEEEEeCCCc
Confidence            5778888888754   78999999999999999999999983            222233333   3578999 999999


Q ss_pred             HHHHHHHHHHHcCCCCeeEecccHHHHHhC
Q 030091          148 RSMMAATDLLNAGFAGITDIAGGFAAWRQN  177 (183)
Q Consensus       148 ~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~  177 (183)
                      +|..++..|.+.||++|++|+||+.+|...
T Consensus        70 rs~~~~~~l~~~G~~~v~~l~GG~~~w~~~   99 (101)
T cd01528          70 RSMQVAQWLLRQGFENVYNLQGGIDAWSLE   99 (101)
T ss_pred             hHHHHHHHHHHcCCccEEEecCCHHHHhhh
Confidence            999999999999999999999999999764

Subgroup 2 includes uncharacterized putative rhodanese-related domains.

>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3

Probab=99.87  E-value=6e-22  Score=134.78  Aligned_cols=89  Identities=29%  Similarity=0.385  Sum_probs=72.7

Q ss_pred             ccHHHHHHHHhCC---CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcC-CCCCeEE-EeCCChHH
Q 030091           75 VPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-RKHDEII-GCQSGKRS  149 (183)
Q Consensus        75 i~~~~~~~~~~~~---~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i-~~~~~iv-~C~~g~~s  149 (183)
                      |+++++.+++.++   +++||||++.||..||||||+|+|+.           ++........ .++++|| ||.+|.+|
T Consensus         1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~~ip~~-----------~l~~~~~~~~~~~~~~iv~~c~~G~rs   69 (95)
T cd01534           1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFRHTPGG-----------QLVQETDHFAPVRGARIVLADDDGVRA   69 (95)
T ss_pred             CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcEeCCHH-----------HHHHHHHHhcccCCCeEEEECCCCChH
Confidence            4678888888653   67999999999999999999999984           2222211112 2467888 99999999


Q ss_pred             HHHHHHHHHcCCCCeeEecccHHHHH
Q 030091          150 MMAATDLLNAGFAGITDIAGGFAAWR  175 (183)
Q Consensus       150 ~~aa~~L~~~G~~~v~~l~GG~~~W~  175 (183)
                      ..++..|..+||+ |++|+||+.+|.
T Consensus        70 ~~aa~~L~~~G~~-v~~l~GG~~~W~   94 (95)
T cd01534          70 DMTASWLAQMGWE-VYVLEGGLAAAL   94 (95)
T ss_pred             HHHHHHHHHcCCE-EEEecCcHHHhc
Confidence            9999999999999 999999999996

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.

>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily

Probab=99.87  E-value=1.2e-21  Score=133.17  Aligned_cols=89  Identities=34%  Similarity=0.578  Sum_probs=79.2

Q ss_pred             ccHHHHHHHHhC--CCEEEEcCCHHhHhc--CCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChHH
Q 030091           75 VPVRVAHELLQA--GHRYLDVRTPEEFSA--GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRS  149 (183)
Q Consensus        75 i~~~~~~~~~~~--~~~lIDvR~~~e~~~--ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~s  149 (183)
                      ++++++.+++++  +++|||+|++.||..  ||||||+|+|+.            .+......++++++|| ||.+|.+|
T Consensus         2 i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~~ip~~------------~~~~~~~~~~~~~~ivv~c~~g~~s   69 (96)
T cd01444           2 ISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHLDED------------SLDDWLGDLDRDRPVVVYCYHGNSS   69 (96)
T ss_pred             cCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCeeCCHH------------HHHHHHhhcCCCCCEEEEeCCCChH
Confidence            577888888876  389999999999999  999999999993            4445556688899999 99999999


Q ss_pred             HHHHHHHHHcCCCCeeEecccHHHHH
Q 030091          150 MMAATDLLNAGFAGITDIAGGFAAWR  175 (183)
Q Consensus       150 ~~aa~~L~~~G~~~v~~l~GG~~~W~  175 (183)
                      ..+++.|+..||++|++|+||+.+|.
T Consensus        70 ~~a~~~l~~~G~~~v~~l~gG~~~w~   95 (96)
T cd01444          70 AQLAQALREAGFTDVRSLAGGFEAWR   95 (96)
T ss_pred             HHHHHHHHHcCCceEEEcCCCHHHhc
Confidence            99999999999999999999999996

Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.

>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional

Probab=99.87  E-value=8.9e-22  Score=158.62  Aligned_cols=138  Identities=20%  Similarity=0.302  Sum_probs=103.3

Q ss_pred             eEEecCCccccccCcccCCccccCC----------CCccccHHHHHHHHhC-CCEEEEcCCHHhHh-----------cCC
Q 030091           46 IGFISSKILSFCPKASLRGNLEAVG----------VPTSVPVRVAHELLQA-GHRYLDVRTPEEFS-----------AGH  103 (183)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~-~~~lIDvR~~~e~~-----------~gh  103 (183)
                      +..++||+..|..............          .....+.+++...++. +++|||+|+++||.           .||
T Consensus       116 v~~l~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~Gh  195 (281)
T PRK11493        116 VSILAGGLAGWQRDDLLLEEGAVELPEGEFNAAFNPEAVVRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGH  195 (281)
T ss_pred             EEEcCCCHHHHHHcCCCccCCCCCCCCCcccccCCccceecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCccccc
Confidence            4588999999975322111111100          1112344455545544 48999999999995           699


Q ss_pred             CCCcEEeccccccCCCCCCCHHHHHHHhhc--CCCCCeEE-EeCCChHHHHHHHHHHHcCCCCeeEecccHHHHHh-CCC
Q 030091          104 ATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ-NGL  179 (183)
Q Consensus       104 IpgAi~ip~~~~~~~~~~~~~~~~~~~~~~--i~~~~~iv-~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~-~g~  179 (183)
                      ||||+|+|+..+...+.+..++.++..+..  ++++++|| ||++|.+|..++..|+.+||+||++|+|||.+|.. .++
T Consensus       196 IpgA~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~  275 (281)
T PRK11493        196 IPGALNVPWTELVREGELKTTDELDAIFFGRGVSFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSEWGARADL  275 (281)
T ss_pred             CCCcCCCCHHHhcCCCCcCCHHHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHHHccCCCC
Confidence            999999998765555566677777776654  67888999 99999999999999999999999999999999998 699


Q ss_pred             CCCC
Q 030091          180 PTEP  183 (183)
Q Consensus       180 pv~~  183 (183)
                      |+++
T Consensus       276 P~~~  279 (281)
T PRK11493        276 PVEP  279 (281)
T ss_pred             CcCC
Confidence            9874

>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein

Probab=99.87  E-value=2e-21  Score=144.54  Aligned_cols=109  Identities=20%  Similarity=0.281  Sum_probs=82.8

Q ss_pred             CCccccHHHHHHHHhCC-CEEEEcCCHH----hHhcC---------CCCCcEEeccccccCCCCC-CCHHHHHHHhhc--
Q 030091           71 VPTSVPVRVAHELLQAG-HRYLDVRTPE----EFSAG---------HATGAINVPYMYRVGSGMT-KNLKFVEEVSTR--  133 (183)
Q Consensus        71 ~~~~i~~~~~~~~~~~~-~~lIDvR~~~----e~~~g---------hIpgAi~ip~~~~~~~~~~-~~~~~~~~~~~~--  133 (183)
                      ....|+++++.++++++ .+|||||++.    ||..|         |||||+|+|+....  .+. .....+...+..  
T Consensus        34 ~~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~~--~l~~~~~~~~~~~l~~~~  111 (162)
T TIGR03865        34 GARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGYG--NLAPAWQAYFRRGLERAT  111 (162)
T ss_pred             CccccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCCCcEEecccCCC--CCCCchhHHHHHHHHHhc
Confidence            34578999999999765 8999999866    45544         99999999963110  111 111223333322  


Q ss_pred             -CCCCCeEE-EeCCCh-HHHHHHHHHHHcCCCCeeEecccHHHHHhCCCCC
Q 030091          134 -FRKHDEII-GCQSGK-RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT  181 (183)
Q Consensus       134 -i~~~~~iv-~C~~g~-~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv  181 (183)
                       .+++++|| ||.+|. +|..+++.|+.+||++|++|+||+.+|..+|+|+
T Consensus       112 ~~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv  162 (162)
T TIGR03865       112 GGDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL  162 (162)
T ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence             36889999 999986 8999999999999999999999999999999986

Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.

>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain

Probab=99.87  E-value=1.2e-21  Score=134.67  Aligned_cols=100  Identities=28%  Similarity=0.465  Sum_probs=76.7

Q ss_pred             ccHHHHHHHHhC-CCEEEEcCCHHhH-hcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChHHHH
Q 030091           75 VPVRVAHELLQA-GHRYLDVRTPEEF-SAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSMM  151 (183)
Q Consensus        75 i~~~~~~~~~~~-~~~lIDvR~~~e~-~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~s~~  151 (183)
                      ++++++.+++++ +.+|||+|++.+| ..||||||+|+|+.....  +. ..+. ......++++++|| ||.+|.+|..
T Consensus         1 is~~el~~~~~~~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~~--~~-~~~~-~~~~~~~~~~~~ivv~c~~g~~s~~   76 (103)
T cd01447           1 LSPEDARALLGSPGVLLVDVRDPRELERTGMIPGAFHAPRGMLEF--WA-DPDS-PYHKPAFAEDKPFVFYCASGWRSAL   76 (103)
T ss_pred             CCHHHHHHHHhCCCeEEEECCCHHHHHhcCCCCCcEEcccchhhh--hc-Cccc-cccccCCCCCCeEEEEcCCCCcHHH
Confidence            467888888874 5899999999998 579999999999842110  00 0000 00011367889999 9999999999


Q ss_pred             HHHHHHHcCCCCeeEecccHHHHHhCC
Q 030091          152 AATDLLNAGFAGITDIAGGFAAWRQNG  178 (183)
Q Consensus       152 aa~~L~~~G~~~v~~l~GG~~~W~~~g  178 (183)
                      +++.|+.+||++|++|+||+.+|..+|
T Consensus        77 ~~~~l~~~G~~~v~~l~Gg~~~w~~~g  103 (103)
T cd01447          77 AGKTLQDMGLKPVYNIEGGFKDWKEAG  103 (103)
T ss_pred             HHHHHHHcChHHhEeecCcHHHHhhcC
Confidence            999999999999999999999998764

This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.

>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain

Probab=99.86  E-value=2.9e-21  Score=137.08  Aligned_cols=104  Identities=23%  Similarity=0.277  Sum_probs=87.3

Q ss_pred             ccHHHHHHHHhC-CCEEEEcCCH-------HhHhcCCCCCcEEeccccccC-----CCCCCCHHHHHHHhhc--CCCCCe
Q 030091           75 VPVRVAHELLQA-GHRYLDVRTP-------EEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--FRKHDE  139 (183)
Q Consensus        75 i~~~~~~~~~~~-~~~lIDvR~~-------~e~~~ghIpgAi~ip~~~~~~-----~~~~~~~~~~~~~~~~--i~~~~~  139 (183)
                      ++++++.+++.. +.+|||+|++       .+|..||||||+|+|+.....     .+++.+.+.+.+....  ++++++
T Consensus         2 i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (122)
T cd01448           2 VSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGISNDDT   81 (122)
T ss_pred             cCHHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCCCCCE
Confidence            577888888876 5889999999       999999999999999854432     3456666666666553  678899


Q ss_pred             EE-EeCC-ChHHHHHHHHHHHcCCCCeeEecccHHHHHhCC
Q 030091          140 II-GCQS-GKRSMMAATDLLNAGFAGITDIAGGFAAWRQNG  178 (183)
Q Consensus       140 iv-~C~~-g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g  178 (183)
                      || ||++ |.++..+++.|+..||++|++|+||+.+|..+|
T Consensus        82 vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g  122 (122)
T cd01448          82 VVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAEG  122 (122)
T ss_pred             EEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence            99 9998 589999999999999999999999999998764

TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.

>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4

Probab=99.86  E-value=2.6e-21  Score=141.54  Aligned_cols=91  Identities=25%  Similarity=0.370  Sum_probs=80.1

Q ss_pred             HHHHHhCC--CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChHHHHHHHHH
Q 030091           80 AHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSMMAATDL  156 (183)
Q Consensus        80 ~~~~~~~~--~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~s~~aa~~L  156 (183)
                      +.++++++  ++|||||++.+|..||||||+|+|.            ..+......++++.+|| ||.+|.+|..+++.|
T Consensus         2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi~~~~------------~~l~~~l~~l~~~~~vVv~c~~g~~a~~aa~~L   69 (145)
T cd01535           2 LAAWLGEGGQTAVVDVTASANYVKRHIPGAWWVLR------------AQLAQALEKLPAAERYVLTCGSSLLARFAAADL   69 (145)
T ss_pred             hHHHHhCCCCeEEEECCCHHHHHcCCCCCceeCCH------------HHHHHHHHhcCCCCCEEEEeCCChHHHHHHHHH
Confidence            34555544  7999999999999999999999998            45666666778888899 999999999999999


Q ss_pred             HHcCCCCeeEecccHHHHHhCCCCCC
Q 030091          157 LNAGFAGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       157 ~~~G~~~v~~l~GG~~~W~~~g~pv~  182 (183)
                      +..||++|++|+||+.+|..+|+|++
T Consensus        70 ~~~G~~~v~~L~GG~~aW~~~g~pl~   95 (145)
T cd01535          70 AALTVKPVFVLEGGTAAWIAAGLPVE   95 (145)
T ss_pred             HHcCCcCeEEecCcHHHHHHCCCCcc
Confidence            99999999999999999999999986

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.

>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily

Probab=99.86  E-value=1.9e-21  Score=134.42  Aligned_cols=98  Identities=23%  Similarity=0.349  Sum_probs=74.7

Q ss_pred             ccHHHHHHHHhC---CCEEEEcCCHHhHhcCCCCCcEEeccccccCC--CCCCCHHHHHHHhhcCCCCCeEE-EeCCChH
Q 030091           75 VPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVGS--GMTKNLKFVEEVSTRFRKHDEII-GCQSGKR  148 (183)
Q Consensus        75 i~~~~~~~~~~~---~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~--~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~  148 (183)
                      |+++++++++++   +++|||||++.||..||||||+|+|+......  .....+ ...++ .. ..+++|| ||.+|.+
T Consensus         1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~-~~~~~-~~-~~~~~vv~~c~~g~~   77 (105)
T cd01525           1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSINIPFSSVFLKEGELEQLP-TVPRL-EN-YKGKIIVIVSHSHKH   77 (105)
T ss_pred             CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCEeCCHHHhccccccccccc-chHHH-Hh-hcCCeEEEEeCCCcc
Confidence            578899998875   37899999999999999999999998533211  100000 00111 11 2367888 9999999


Q ss_pred             HHHHHHHHHHcCCCCeeEecccHHHHH
Q 030091          149 SMMAATDLLNAGFAGITDIAGGFAAWR  175 (183)
Q Consensus       149 s~~aa~~L~~~G~~~v~~l~GG~~~W~  175 (183)
                      |..+++.|..+||++|++|+||+.+|+
T Consensus        78 s~~~a~~L~~~G~~~v~~l~GG~~a~~  104 (105)
T cd01525          78 AALFAAFLVKCGVPRVCILDGGINALK  104 (105)
T ss_pred             HHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence            999999999999999999999999995

Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.

>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain

Probab=99.86  E-value=2.1e-21  Score=136.83  Aligned_cols=102  Identities=24%  Similarity=0.446  Sum_probs=84.2

Q ss_pred             ccHHHHHHHHhCC-CEEEEcCCHHhHhc-----------CCCCCcEEeccccccC-CCCCCCHHHHHHHhhc--CCCCCe
Q 030091           75 VPVRVAHELLQAG-HRYLDVRTPEEFSA-----------GHATGAINVPYMYRVG-SGMTKNLKFVEEVSTR--FRKHDE  139 (183)
Q Consensus        75 i~~~~~~~~~~~~-~~lIDvR~~~e~~~-----------ghIpgAi~ip~~~~~~-~~~~~~~~~~~~~~~~--i~~~~~  139 (183)
                      ++++++.++++++ ++|||+|+..||..           ||||||+|+|+..... .+.+.+++.+...+..  ++++++
T Consensus         1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (118)
T cd01449           1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDEDGTFKSPEELRALFAALGITPDKP   80 (118)
T ss_pred             CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCCCCcCCHHHHHHHHHHcCCCCCCC
Confidence            4677888887654 89999999999987           9999999999864432 2344566677766665  567889


Q ss_pred             EE-EeCCChHHHHHHHHHHHcCCCCeeEecccHHHHHh
Q 030091          140 II-GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ  176 (183)
Q Consensus       140 iv-~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~  176 (183)
                      || ||++|.+|..+++.|+.+||++|++|+||+.+|..
T Consensus        81 iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~~  118 (118)
T cd01449          81 VIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWGS  118 (118)
T ss_pred             EEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhcC
Confidence            99 99999999999999999999999999999999963

TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.

>PLN02723 3-mercaptopyruvate sulfurtransferase

Probab=99.86  E-value=3.1e-21  Score=158.06  Aligned_cols=109  Identities=17%  Similarity=0.302  Sum_probs=91.9

Q ss_pred             ccHHHHHHHHhC-CCEEEEcCCHHhH-----------hcCCCCCcEEecccccc-CCCCCCCHHHHHHHhhc--CCCCCe
Q 030091           75 VPVRVAHELLQA-GHRYLDVRTPEEF-----------SAGHATGAINVPYMYRV-GSGMTKNLKFVEEVSTR--FRKHDE  139 (183)
Q Consensus        75 i~~~~~~~~~~~-~~~lIDvR~~~e~-----------~~ghIpgAi~ip~~~~~-~~~~~~~~~~~~~~~~~--i~~~~~  139 (183)
                      ++.+++.+.++. +.+|||+|++.||           ..||||||+|+|+.... ..+.+.+.+.++.++..  ++++++
T Consensus       192 ~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~~~~~~~~~el~~~~~~~gi~~~~~  271 (320)
T PLN02723        192 WTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDSSQTLLPAEELKKRFEQEGISLDSP  271 (320)
T ss_pred             ecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCCCCCCCCHHHHHHHHHhcCCCCCCC
Confidence            567788777765 4789999999998           46999999999996543 34567788888887764  788899


Q ss_pred             EE-EeCCChHHHHHHHHHHHcCCCCeeEecccHHHHHhC-CCCCCC
Q 030091          140 II-GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQN-GLPTEP  183 (183)
Q Consensus       140 iv-~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~-g~pv~~  183 (183)
                      || ||++|.+|..+++.|+.+||++|++|+|||.+|... ++|+++
T Consensus       272 iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv~~  317 (320)
T PLN02723        272 IVASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGALPDTPVAT  317 (320)
T ss_pred             EEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCccC
Confidence            99 999999999999999999999999999999999875 678763

>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily

Probab=99.86  E-value=2.9e-21  Score=137.23  Aligned_cols=91  Identities=29%  Similarity=0.411  Sum_probs=76.4

Q ss_pred             cccHHHHHHHHhC-------CCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHh-h-----cCCCCCeE
Q 030091           74 SVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS-T-----RFRKHDEI  140 (183)
Q Consensus        74 ~i~~~~~~~~~~~-------~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~-~-----~i~~~~~i  140 (183)
                      .|+++++.+++.+       +++|||||++.||..||||||+|+|..           +.+.... .     .++++++|
T Consensus         3 ~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~-----------~~l~~~~~~~~~~~~~~~~~~v   71 (121)
T cd01530           3 RISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTK-----------DELEEFFLDKPGVASKKKRRVL   71 (121)
T ss_pred             ccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcH-----------HHHHHHHHHhhcccccCCCCEE
Confidence            5888999888865       378999999999999999999999983           2222222 1     26788999


Q ss_pred             E-EeC-CChHHHHHHHHHHHc------------CCCCeeEecccHHHHH
Q 030091          141 I-GCQ-SGKRSMMAATDLLNA------------GFAGITDIAGGFAAWR  175 (183)
Q Consensus       141 v-~C~-~g~~s~~aa~~L~~~------------G~~~v~~l~GG~~~W~  175 (183)
                      | ||. +|.||..+++.|++.            ||++|++|+||+.+|.
T Consensus        72 v~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~  120 (121)
T cd01530          72 IFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF  120 (121)
T ss_pred             EEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence            9 997 999999999999985            9999999999999984

They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).

>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1

Probab=99.85  E-value=2.8e-21  Score=136.50  Aligned_cols=101  Identities=29%  Similarity=0.426  Sum_probs=82.0

Q ss_pred             ccHHHHHHHHhC--CCEEEEcCCHHhHh-cCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChHHH
Q 030091           75 VPVRVAHELLQA--GHRYLDVRTPEEFS-AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSM  150 (183)
Q Consensus        75 i~~~~~~~~~~~--~~~lIDvR~~~e~~-~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~s~  150 (183)
                      |+++++.+++++  +.+|||||++.||. .||||||+|+|+..+...  .....+...+...++++++|| ||.+|.+|.
T Consensus         1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~--~~~~~~~~~l~~~~~~~~~ivv~C~~G~rs~   78 (117)
T cd01522           1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDM--EINPNFLAELEEKVGKDRPVLLLCRSGNRSI   78 (117)
T ss_pred             CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCceecchhhcccc--ccCHHHHHHHHhhCCCCCeEEEEcCCCccHH
Confidence            577889898876  48899999999999 999999999998533211  112334444444457888999 999999999


Q ss_pred             HHHHHHHHcCCCCeeEecccHHHHHhC
Q 030091          151 MAATDLLNAGFAGITDIAGGFAAWRQN  177 (183)
Q Consensus       151 ~aa~~L~~~G~~~v~~l~GG~~~W~~~  177 (183)
                      .++..|+++||++|+.|.||+.+|...
T Consensus        79 ~aa~~L~~~G~~~v~~l~gG~~~~~~~  105 (117)
T cd01522          79 AAAEAAAQAGFTNVYNVLEGFEGDLDA  105 (117)
T ss_pred             HHHHHHHHCCCCeEEECcCceecCCCC
Confidence            999999999999999999999999663

This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.

>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily

Probab=99.85  E-value=4.7e-21  Score=130.55  Aligned_cols=84  Identities=25%  Similarity=0.402  Sum_probs=69.2

Q ss_pred             CCCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChHHHHHHHHHHHcCCCCe
Q 030091           86 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSMMAATDLLNAGFAGI  164 (183)
Q Consensus        86 ~~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~s~~aa~~L~~~G~~~v  164 (183)
                      ++.+|||||++.+|..||||||+|+|+...     ......++. +..++++++|| ||++|.++..+++.|+..||+||
T Consensus        11 ~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~-----~~~~~~~~~-~~~~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v   84 (96)
T cd01529          11 PGTALLDVRAEDEYAAGHLPGKRSIPGAAL-----VLRSQELQA-LEAPGRATRYVLTCDGSLLARFAAQELLALGGKPV   84 (96)
T ss_pred             CCeEEEeCCCHHHHcCCCCCCcEeCCHHHh-----cCCHHHHHH-hhcCCCCCCEEEEeCChHHHHHHHHHHHHcCCCCE
Confidence            458999999999999999999999997421     122233322 33457788899 99999999999999999999999


Q ss_pred             eEecccHHHHH
Q 030091          165 TDIAGGFAAWR  175 (183)
Q Consensus       165 ~~l~GG~~~W~  175 (183)
                      ++|+||+.+|.
T Consensus        85 ~~l~GG~~~W~   95 (96)
T cd01529          85 ALLDGGTSAWV   95 (96)
T ss_pred             EEeCCCHHHhc
Confidence            99999999996

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.

>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.85  E-value=9.8e-21  Score=151.31  Aligned_cols=140  Identities=21%  Similarity=0.353  Sum_probs=109.8

Q ss_pred             cceEEecCCccccccCcccCCccccCCC----------CccccHHHHHHHHhCC-CEEEEcCCHHhHhc----------C
Q 030091           44 DNIGFISSKILSFCPKASLRGNLEAVGV----------PTSVPVRVAHELLQAG-HRYLDVRTPEEFSA----------G  102 (183)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~----------g  102 (183)
                      .-+.+|+||++.|...+...+.......          ...++...+....+.. .+|||+|++++|..          |
T Consensus       117 ~~V~iLdGG~~~W~~~g~p~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~~G  196 (285)
T COG2897         117 ENVRILDGGLPAWKAAGLPLETEPPEPPPTTFSAKYNVKAVVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGKAG  196 (285)
T ss_pred             CceEEecCCHHHHHHcCCCccCCCCCCCCccccccCCccccCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCCCC
Confidence            4478999999999875444433211111          1224556666666654 78999999999997          9


Q ss_pred             CCCCcEEeccccccC-CCCCCCHHHHHHHhh--cCCCCCeEE-EeCCChHHHHHHHHHHHcCCCCeeEecccHHHHHhC-
Q 030091          103 HATGAINVPYMYRVG-SGMTKNLKFVEEVST--RFRKHDEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQN-  177 (183)
Q Consensus       103 hIpgAi~ip~~~~~~-~~~~~~~~~~~~~~~--~i~~~~~iv-~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~-  177 (183)
                      |||||+|+|+..... .+++..++.++.+.+  .++++++|| ||.+|.+|...+..|+.+|+.++.+|+|+|.+|.+. 
T Consensus       197 HIPGAiNipw~~~~~~~~~~~~~~~~~~l~~~~gi~~~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg~~~  276 (285)
T COG2897         197 HIPGAINIPWTDLVDDGGLFKSPEEIARLYADAGIDPDKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWGSDP  276 (285)
T ss_pred             CCCCCcCcCHHHHhcCCCccCcHHHHHHHHHhcCCCCCCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhhcCC
Confidence            999999999976664 567778888888774  489999999 999999999999999999999889999999999885 


Q ss_pred             CCCCCC
Q 030091          178 GLPTEP  183 (183)
Q Consensus       178 g~pv~~  183 (183)
                      +.|+++
T Consensus       277 ~~PV~~  282 (285)
T COG2897         277 DRPVET  282 (285)
T ss_pred             CCcccc
Confidence            568763

>smart00450 RHOD Rhodanese Homology Domain

Probab=99.85  E-value=1e-20  Score=128.15  Aligned_cols=95  Identities=34%  Similarity=0.568  Sum_probs=74.3

Q ss_pred             CCCEEEEcCCHHhHhcCCCCCcEEeccccccCCC-CCCCHHHHHHH-hhcCCCCCeEE-EeCCChHHHHHHHHHHHcCCC
Q 030091           86 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSG-MTKNLKFVEEV-STRFRKHDEII-GCQSGKRSMMAATDLLNAGFA  162 (183)
Q Consensus        86 ~~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~-~~~~~~~~~~~-~~~i~~~~~iv-~C~~g~~s~~aa~~L~~~G~~  162 (183)
                      ++++|||+|++.||..+|||||+|+|........ ......+.... ...++++++|| ||.+|.++..+++.|++.||+
T Consensus         3 ~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~l~~~G~~   82 (100)
T smart00450        3 EKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVVVYCRSGNRSAKAAWLLRELGFK   82 (100)
T ss_pred             CCEEEEECCCHHHhccCCCCCceeCCHHHhccCCCCcCHHHHHHHHHHcCCCCCCeEEEEeCCCcHHHHHHHHHHHcCCC
Confidence            4589999999999999999999999985433221 11111111111 23367888999 999999999999999999999


Q ss_pred             CeeEecccHHHHHhCCCC
Q 030091          163 GITDIAGGFAAWRQNGLP  180 (183)
Q Consensus       163 ~v~~l~GG~~~W~~~g~p  180 (183)
                      +|++|+||+.+|...+.|
T Consensus        83 ~v~~l~GG~~~w~~~~~~  100 (100)
T smart00450       83 NVYLLDGGYKEWSAAGPP  100 (100)
T ss_pred             ceEEecCCHHHHHhcCCC
Confidence            999999999999998764

An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=99.84  E-value=2.3e-20  Score=156.64  Aligned_cols=133  Identities=26%  Similarity=0.434  Sum_probs=104.3

Q ss_pred             eeeeeecCCcccceEEecCCccccccCcccCCccccCCCCccccHHHHHHHHhCC--CEEEEcCCHHhHhcCCCCCcEEe
Q 030091           33 LLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINV  110 (183)
Q Consensus        33 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~lIDvR~~~e~~~ghIpgAi~i  110 (183)
                      .+++.++|.|+.+..+.  ++..||.....  ..........++++++.++++++  ++|||+|+++||..+|||||+|+
T Consensus       251 ~~~~~~~~~C~~~~~~~--~~~~~c~~~~~--~~~~~~~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAini  326 (392)
T PRK07878        251 TIKIRKDPSTPKITELI--DYEAFCGVVSD--EAQQAAAGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQLI  326 (392)
T ss_pred             eEeeccCCCCCcccccc--cchhhcccccc--cccccCCCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCEEc
Confidence            36788899998766555  57777752211  11113345679999999998764  68999999999999999999999


Q ss_pred             ccccccCCCCCCCHHHHH-HHhhcCCCCCeEE-EeCCChHHHHHHHHHHHcCCCCeeEecccHHHHHhCCCC
Q 030091          111 PYMYRVGSGMTKNLKFVE-EVSTRFRKHDEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLP  180 (183)
Q Consensus       111 p~~~~~~~~~~~~~~~~~-~~~~~i~~~~~iv-~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p  180 (183)
                      |+.           +... .....++++++|| ||++|.+|..+++.|++.||++|++|+||+.+|.++..+
T Consensus       327 p~~-----------~l~~~~~~~~l~~d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~~  387 (392)
T PRK07878        327 PKS-----------EILSGEALAKLPQDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVVAWAKQVDP  387 (392)
T ss_pred             ChH-----------HhcchhHHhhCCCCCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcHHHHHHhcCC
Confidence            984           1111 2345678899999 999999999999999999999999999999999987544

>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family

Probab=99.84  E-value=1.9e-20  Score=130.21  Aligned_cols=102  Identities=31%  Similarity=0.548  Sum_probs=78.4

Q ss_pred             cHHHHHHHHh-CCCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHH----HHHHhhcCCCCCeEE-EeCCChHH
Q 030091           76 PVRVAHELLQ-AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKF----VEEVSTRFRKHDEII-GCQSGKRS  149 (183)
Q Consensus        76 ~~~~~~~~~~-~~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~----~~~~~~~i~~~~~iv-~C~~g~~s  149 (183)
                      +++++++++. .+++|||+|++.+|..||||||+|+|+............+.    .......++++++|| ||.+|.++
T Consensus         1 s~~el~~~l~~~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~~~   80 (113)
T PF00581_consen    1 SPEELKEMLENESVLLIDVRSPEEYERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGWRS   80 (113)
T ss_dssp             -HHHHHHHHTTTTEEEEEESSHHHHHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSCHH
T ss_pred             CHHHHHhhhhCCCeEEEEeCCHHHHHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeeccccc
Confidence            5788989883 45999999999999999999999999954422222222232    233344568888899 99988887


Q ss_pred             HHHHHH-----HHHcCCCCeeEecccHHHHHhC
Q 030091          150 MMAATD-----LLNAGFAGITDIAGGFAAWRQN  177 (183)
Q Consensus       150 ~~aa~~-----L~~~G~~~v~~l~GG~~~W~~~  177 (183)
                      ..++..     |..+||++|++|+||+.+|.++
T Consensus        81 ~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~~  113 (113)
T PF00581_consen   81 GSAAAARVAWILKKLGFKNVYILDGGFEAWKAE  113 (113)
T ss_dssp             HHHHHHHHHHHHHHTTTSSEEEETTHHHHHHHH
T ss_pred             chhHHHHHHHHHHHcCCCCEEEecChHHHHhcC
Confidence            776666     8889999999999999999863

; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=99.84  E-value=1.9e-20  Score=156.52  Aligned_cols=98  Identities=35%  Similarity=0.591  Sum_probs=86.7

Q ss_pred             ccccHHHHHHHHhCCCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhc--CCCCCeEE-EeCCChHH
Q 030091           73 TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEII-GCQSGKRS  149 (183)
Q Consensus        73 ~~i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~--i~~~~~iv-~C~~g~~s  149 (183)
                      ..++++++.++++++.+|||||+++||..||||||+|+|+.            .+......  .+++++|| ||++|.+|
T Consensus         3 ~~is~~el~~~l~~~~~ivDvR~~~e~~~ghIpgAi~ip~~------------~l~~~~~~~~~~~~~~IvvyC~~G~rs   70 (376)
T PRK08762          3 REISPAEARARAAQGAVLIDVREAHERASGQAEGALRIPRG------------FLELRIETHLPDRDREIVLICASGTRS   70 (376)
T ss_pred             ceeCHHHHHHHHhCCCEEEECCCHHHHhCCcCCCCEECCHH------------HHHHHHhhhcCCCCCeEEEEcCCCcHH
Confidence            46889999999988899999999999999999999999983            33333333  36788999 99999999


Q ss_pred             HHHHHHHHHcCCCCeeEecccHHHHHhCCCCCC
Q 030091          150 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       150 ~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~  182 (183)
                      ..+++.|++.||++|++|+||+.+|.++|+|++
T Consensus        71 ~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~  103 (376)
T PRK08762         71 AHAAATLRELGYTRVASVAGGFSAWKDAGLPLE  103 (376)
T ss_pred             HHHHHHHHHcCCCceEeecCcHHHHHhcCCccc
Confidence            999999999999999999999999999999986

>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional

Probab=99.83  E-value=4.9e-20  Score=161.68  Aligned_cols=138  Identities=20%  Similarity=0.312  Sum_probs=106.3

Q ss_pred             ceEEecCCccccccCcccCCcccc----------CCCCccccHHHHHHHHhC-CCEEEEcCCHHhHh--------cCCCC
Q 030091           45 NIGFISSKILSFCPKASLRGNLEA----------VGVPTSVPVRVAHELLQA-GHRYLDVRTPEEFS--------AGHAT  105 (183)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~i~~~~~~~~~~~-~~~lIDvR~~~e~~--------~ghIp  105 (183)
                      -+.+++||+.+|............          ......++.+++.+.+++ +++|||+|+++||.        .||||
T Consensus       109 ~V~iLdGG~~aW~~ag~p~~~~~~~~~~~~~~~~~~~~~~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~~~r~GHIP  188 (610)
T PRK09629        109 GYHYLDGGVLAWEAQALPLSTDVPPVAGGPVTLTLHDEPTATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHIP  188 (610)
T ss_pred             CEEEcCCCHHHHHHcCCccccCCCCCCCcceeeccCCcccccHHHHHHhhCCCCcEEEECCCccccCCcccccccCCCCC
Confidence            457899999999864322111100          011124677888888765 47899999999995        69999


Q ss_pred             CcEEecccccc-CCCCCCCHHHHHHHhhc--CCCCCeEE-EeCCChHHHHHHHHHHHcCCCCeeEecccHHHHHhC-CCC
Q 030091          106 GAINVPYMYRV-GSGMTKNLKFVEEVSTR--FRKHDEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQN-GLP  180 (183)
Q Consensus       106 gAi~ip~~~~~-~~~~~~~~~~~~~~~~~--i~~~~~iv-~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~-g~p  180 (183)
                      ||+|+|+.... ..+.+...+.+++++..  ++++++|| ||++|.+|..+++.|+.+||++|++|+|||.+|... ++|
T Consensus       189 GAvnip~~~~~~~~~~lk~~~el~~~~~~~Gi~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~lP  268 (610)
T PRK09629        189 GAVNFEWTAGMDKARNLRIRQDMPEILRDLGITPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTP  268 (610)
T ss_pred             CCeecCHHHhcCCCCCCCCHHHHHHHHHHcCCCCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHhCCCCCc
Confidence            99999985433 33456777778877765  67889999 999999999999999999999999999999999875 778


Q ss_pred             CC
Q 030091          181 TE  182 (183)
Q Consensus       181 v~  182 (183)
                      ++
T Consensus       269 v~  270 (610)
T PRK09629        269 VE  270 (610)
T ss_pred             cc
Confidence            76

>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1

Probab=99.83  E-value=2.9e-20  Score=125.83  Aligned_cols=80  Identities=24%  Similarity=0.436  Sum_probs=65.8

Q ss_pred             CCCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCC-CCCeEE-EeCCChH--HHHHHHHHHHcCC
Q 030091           86 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-KHDEII-GCQSGKR--SMMAATDLLNAGF  161 (183)
Q Consensus        86 ~~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~-~~~~iv-~C~~g~~--s~~aa~~L~~~G~  161 (183)
                      ++++|||+|++.||..+|||||+|+|..           .+.......++ ++++|| ||.+|.+  |..+++.|++.||
T Consensus         9 ~~~~liDvR~~~e~~~~hi~ga~~ip~~-----------~~~~~~~~~~~~~~~~ivl~c~~G~~~~s~~aa~~L~~~G~   77 (92)
T cd01532           9 EEIALIDVREEDPFAQSHPLWAANLPLS-----------RLELDAWVRIPRRDTPIVVYGEGGGEDLAPRAARRLSELGY   77 (92)
T ss_pred             CCeEEEECCCHHHHhhCCcccCeeCCHH-----------HHHhhhHhhCCCCCCeEEEEeCCCCchHHHHHHHHHHHcCc
Confidence            4589999999999999999999999984           22112222343 478899 9999876  6799999999999


Q ss_pred             CCeeEecccHHHHHh
Q 030091          162 AGITDIAGGFAAWRQ  176 (183)
Q Consensus       162 ~~v~~l~GG~~~W~~  176 (183)
                      ++|++|+||+.+|.+
T Consensus        78 ~~v~~l~GG~~~W~~   92 (92)
T cd01532          78 TDVALLEGGLQGWRA   92 (92)
T ss_pred             cCEEEccCCHHHHcC
Confidence            999999999999963

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.

>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain

Probab=99.82  E-value=9.6e-20  Score=132.21  Aligned_cols=101  Identities=20%  Similarity=0.256  Sum_probs=82.1

Q ss_pred             ccHHHHHHHHh-----CCCEEEEcCCH--------HhHhc------------CCCCCcEEeccccccC-----CCCCCCH
Q 030091           75 VPVRVAHELLQ-----AGHRYLDVRTP--------EEFSA------------GHATGAINVPYMYRVG-----SGMTKNL  124 (183)
Q Consensus        75 i~~~~~~~~~~-----~~~~lIDvR~~--------~e~~~------------ghIpgAi~ip~~~~~~-----~~~~~~~  124 (183)
                      ++++++.+.++     .+.+|||+|..        ++|..            ||||||+|+|+.....     ...+.+.
T Consensus         1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~~~~~~~p~~   80 (138)
T cd01445           1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAGFEESMEPSE   80 (138)
T ss_pred             CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCCCCCCCCCCH
Confidence            46788888887     34899999987        89988            9999999999854321     1334455


Q ss_pred             HHHHHHhhc--CCCCCeEE-EeCC---ChHHHHHHHHHHHcCCCCeeEecccHHHHH
Q 030091          125 KFVEEVSTR--FRKHDEII-GCQS---GKRSMMAATDLLNAGFAGITDIAGGFAAWR  175 (183)
Q Consensus       125 ~~~~~~~~~--i~~~~~iv-~C~~---g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~  175 (183)
                      +.++..+..  ++++++|| ||++   |..+.++++.|+.+|+++|++|+||+.+|.
T Consensus        81 ~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~  137 (138)
T cd01445          81 AEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF  137 (138)
T ss_pred             HHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence            667776654  77889999 9986   788999999999999999999999999996

Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.

>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional

Probab=99.82  E-value=9.2e-20  Score=146.91  Aligned_cols=111  Identities=19%  Similarity=0.204  Sum_probs=91.3

Q ss_pred             ccccHHHHHHHHhCC-CEEEEcCC----------HHhHhcCCCCCcEEeccccccC-----CCCCCCHHHHHHHhhc--C
Q 030091           73 TSVPVRVAHELLQAG-HRYLDVRT----------PEEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--F  134 (183)
Q Consensus        73 ~~i~~~~~~~~~~~~-~~lIDvR~----------~~e~~~ghIpgAi~ip~~~~~~-----~~~~~~~~~~~~~~~~--i  134 (183)
                      ..++++++.+.++++ ++|||+|+          +.+|..||||||+|+|+.....     ..++..++.+...+..  +
T Consensus         5 ~lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi   84 (281)
T PRK11493          5 WFVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTSPLPHMMPRPETFAVAMRELGV   84 (281)
T ss_pred             cccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCCCCCCCCCCHHHHHHHHHHcCC
Confidence            358889999888764 89999996          7899999999999999854322     2344566777777766  5


Q ss_pred             CCCCeEE-EeCCChH-HHHHHHHHHHcCCCCeeEecccHHHHHhCCCCCCC
Q 030091          135 RKHDEII-GCQSGKR-SMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       135 ~~~~~iv-~C~~g~~-s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      +++++|| ||.++.+ +.++++.|..+||++|++|+||+.+|.++|+|+++
T Consensus        85 ~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~  135 (281)
T PRK11493         85 NQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEE  135 (281)
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccC
Confidence            7889999 9998764 66888999999999999999999999999999863

>PRK01415 hypothetical protein; Validated

Probab=99.81  E-value=1e-19  Score=142.98  Aligned_cols=100  Identities=18%  Similarity=0.239  Sum_probs=81.8

Q ss_pred             CccccHHHHHHHHhC-CCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChHH
Q 030091           72 PTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRS  149 (183)
Q Consensus        72 ~~~i~~~~~~~~~~~-~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~s  149 (183)
                      ...|+++++.+++++ +++|||||++.||..||||||+|+|.....     ..+.+.. ....++++++|+ ||.+|.||
T Consensus       111 g~~i~p~e~~~ll~~~~~vvIDVRn~~E~~~Ghi~gAinip~~~f~-----e~~~~~~-~~~~~~k~k~Iv~yCtgGiRs  184 (247)
T PRK01415        111 GEYIEPKDWDEFITKQDVIVIDTRNDYEVEVGTFKSAINPNTKTFK-----QFPAWVQ-QNQELLKGKKIAMVCTGGIRC  184 (247)
T ss_pred             ccccCHHHHHHHHhCCCcEEEECCCHHHHhcCCcCCCCCCChHHHh-----hhHHHHh-hhhhhcCCCeEEEECCCChHH
Confidence            457999999999975 489999999999999999999999973110     0011111 123467889999 99999999


Q ss_pred             HHHHHHHHHcCCCCeeEecccHHHHHhC
Q 030091          150 MMAATDLLNAGFAGITDIAGGFAAWRQN  177 (183)
Q Consensus       150 ~~aa~~L~~~G~~~v~~l~GG~~~W~~~  177 (183)
                      ..++..|++.||++|+.|.||+.+|.++
T Consensus       185 ~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~  212 (247)
T PRK01415        185 EKSTSLLKSIGYDEVYHLKGGILQYLED  212 (247)
T ss_pred             HHHHHHHHHcCCCcEEEechHHHHHHHh
Confidence            9999999999999999999999999875

>PRK07411 hypothetical protein; Validated

Probab=99.81  E-value=2.6e-19  Score=150.12  Aligned_cols=139  Identities=26%  Similarity=0.374  Sum_probs=101.3

Q ss_pred             eeeeeecCCcccceEEecCCccccccCccc-CCccccCCCCccccHHHHHHHHhCC---CEEEEcCCHHhHhcCCCCCcE
Q 030091           33 LLSLTVDQQRCDNIGFISSKILSFCPKASL-RGNLEAVGVPTSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAI  108 (183)
Q Consensus        33 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~---~~lIDvR~~~e~~~ghIpgAi  108 (183)
                      .++++++|.|+.+..+.  .+..||..... ............++++++.++++.+   .+|||||++.||..||||||+
T Consensus       243 ~~~~~~~~~c~~i~~~~--~~~~~~G~~~~~~~~~~~~~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAi  320 (390)
T PRK07411        243 ELKLRPNPERPVIEKLI--DYEQFCGIPQAKAAEAAQKAEIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSV  320 (390)
T ss_pred             EEeccCCCCCCcccccc--chhhhcccccccccccccccccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCE
Confidence            46777888887765544  56667641110 0111123445679999999988753   689999999999999999999


Q ss_pred             EeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChHHHHHHHHHHHcCCCCeeEecccHHHHHhCCCCC
Q 030091          109 NVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT  181 (183)
Q Consensus       109 ~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv  181 (183)
                      |+|+.++...      ... .....++++++|| ||.+|.||..+++.|++.||++ +.|.||+.+|.++..|.
T Consensus       321 niP~~~l~~~------~~~-~~l~~l~~d~~IVvyC~~G~RS~~aa~~L~~~G~~~-~~l~GG~~~W~~~~~p~  386 (390)
T PRK07411        321 LVPLPDIENG------PGV-EKVKELLNGHRLIAHCKMGGRSAKALGILKEAGIEG-TNVKGGITAWSREVDPS  386 (390)
T ss_pred             EccHHHhhcc------cch-HHHhhcCCCCeEEEECCCCHHHHHHHHHHHHcCCCe-EEecchHHHHHHhcCCC
Confidence            9998522111      001 1234466788999 9999999999999999999985 57999999999876654

>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional

Probab=99.81  E-value=1.7e-19  Score=158.29  Aligned_cols=110  Identities=20%  Similarity=0.205  Sum_probs=93.4

Q ss_pred             ccccHHHHHHHHhCC-CEEEEcCCHHhHhcCCCCCcEEecccccc-----CCCCCCCHHHHHHHhhc--CCCCCeEE-Ee
Q 030091           73 TSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRV-----GSGMTKNLKFVEEVSTR--FRKHDEII-GC  143 (183)
Q Consensus        73 ~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIpgAi~ip~~~~~-----~~~~~~~~~~~~~~~~~--i~~~~~iv-~C  143 (183)
                      ..|+++++.++++++ ++|||+|++.+|..||||||+|+++....     ..+++.+.+.+...+..  ++++++|| ||
T Consensus         9 ~lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI~~d~~VVvYd   88 (610)
T PRK09629          9 LVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGKPPAPGLLPDTADLEQLFGELGHNPDAVYVVYD   88 (610)
T ss_pred             ceecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHhhccCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEEC
Confidence            468999999999764 89999999999999999999999974321     23456666777777666  57789999 99


Q ss_pred             CCC-hHHHHHHHHHHHcCCCCeeEecccHHHHHhCCCCCC
Q 030091          144 QSG-KRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       144 ~~g-~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~  182 (183)
                      ++| .++.+++|.|+.+||++|++|+||+.+|..+|+|++
T Consensus        89 ~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~  128 (610)
T PRK09629         89 DEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLS  128 (610)
T ss_pred             CCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccc
Confidence            976 578899999999999999999999999999999875

>PRK05320 rhodanese superfamily protein; Provisional

Probab=99.81  E-value=1.6e-19  Score=143.44  Aligned_cols=101  Identities=19%  Similarity=0.247  Sum_probs=80.5

Q ss_pred             CCccccHHHHHHHHhC-------CCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-E
Q 030091           71 VPTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-G  142 (183)
Q Consensus        71 ~~~~i~~~~~~~~~~~-------~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~  142 (183)
                      ....+++.++.+++++       +.+|||||++.||+.||||||+|+|....     ...+.++......+ ++++|| |
T Consensus       108 ~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f-----~~~~~~l~~~~~~~-kdk~Ivvy  181 (257)
T PRK05320        108 RAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKF-----TEFPEALAAHRADL-AGKTVVSF  181 (257)
T ss_pred             cCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHh-----hhhHHHHHhhhhhc-CCCeEEEE
Confidence            3457899999888865       27899999999999999999999999411     01112222222223 678999 9


Q ss_pred             eCCChHHHHHHHHHHHcCCCCeeEecccHHHHHhC
Q 030091          143 CQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQN  177 (183)
Q Consensus       143 C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~  177 (183)
                      |.+|.|+..++..|++.||++|++|.||+.+|.++
T Consensus       182 C~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~~  216 (257)
T PRK05320        182 CTGGIRCEKAAIHMQEVGIDNVYQLEGGILKYFEE  216 (257)
T ss_pred             CCCCHHHHHHHHHHHHcCCcceEEeccCHHHHHHh
Confidence            99999999999999999999999999999999874

>PLN02723 3-mercaptopyruvate sulfurtransferase

Probab=99.81  E-value=3.3e-19  Score=146.11  Aligned_cols=111  Identities=18%  Similarity=0.218  Sum_probs=90.7

Q ss_pred             ccccHHHHHHHHhC-CCEEEEcC--------C-HHhHhcCCCCCcEEeccccccC-----CCCCCCHHHHHHHhhc--CC
Q 030091           73 TSVPVRVAHELLQA-GHRYLDVR--------T-PEEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--FR  135 (183)
Q Consensus        73 ~~i~~~~~~~~~~~-~~~lIDvR--------~-~~e~~~ghIpgAi~ip~~~~~~-----~~~~~~~~~~~~~~~~--i~  135 (183)
                      ..|+++++.+++++ +.+|||+|        + ..+|..||||||+|+++..+..     ..++..++.+...+..  +.
T Consensus        22 ~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~~~~~lp~~~~~~~~l~~~Gi~  101 (320)
T PLN02723         22 PVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTDLPHMLPSEEAFAAAVSALGIE  101 (320)
T ss_pred             ceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCCcCCCCCCHHHHHHHHHHcCCC
Confidence            47899999999875 48899996        3 3789999999999999754332     2455666777777776  55


Q ss_pred             CCCeEE-EeCCCh-HHHHHHHHHHHcCCCCeeEecccHHHHHhCCCCCCC
Q 030091          136 KHDEII-GCQSGK-RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       136 ~~~~iv-~C~~g~-~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      ++++|| ||.+|. .+.++++.|+.+||++|++|+||+.+|..+|+|+++
T Consensus       102 ~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~  151 (320)
T PLN02723        102 NKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVES  151 (320)
T ss_pred             CCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCccc
Confidence            788999 998775 466889999999999999999999999999999863

>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.80  E-value=2.5e-19  Score=124.32  Aligned_cols=86  Identities=40%  Similarity=0.669  Sum_probs=74.3

Q ss_pred             CCCEEEEcCCHHhHhcCCCCC-cEEeccccccCCCCCCCHHHHHHHhhc--CCCCCeEE-EeCCChHHHHHHHHHHHcCC
Q 030091           86 AGHRYLDVRTPEEFSAGHATG-AINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEII-GCQSGKRSMMAATDLLNAGF  161 (183)
Q Consensus        86 ~~~~lIDvR~~~e~~~ghIpg-Ai~ip~~~~~~~~~~~~~~~~~~~~~~--i~~~~~iv-~C~~g~~s~~aa~~L~~~G~  161 (183)
                      .+.+|||||++.||..+|||| ++|+|...+            ......  .+++++|| ||.+|.||..++..|+..||
T Consensus        19 ~~~~liDvR~~~e~~~~~i~~~~~~ip~~~~------------~~~~~~~~~~~~~~ivv~C~~G~rS~~aa~~L~~~G~   86 (110)
T COG0607          19 EDAVLLDVREPEEYERGHIPGAAINIPLSEL------------KAAENLLELPDDDPIVVYCASGVRSAAAAAALKLAGF   86 (110)
T ss_pred             CCCEEEeccChhHhhhcCCCcceeeeecccc------------hhhhcccccCCCCeEEEEeCCCCChHHHHHHHHHcCC
Confidence            459999999999999999999 999999522            221111  57889999 99999999999999999999


Q ss_pred             CCeeEecccHHHHHhCCCCCCC
Q 030091          162 AGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       162 ~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      ++++++.||+.+|..+++|++.
T Consensus        87 ~~~~~l~gG~~~w~~~~~~~~~  108 (110)
T COG0607          87 TNVYNLDGGIDAWKGAGLPLVR  108 (110)
T ss_pred             ccccccCCcHHHHHhcCCCccc
Confidence            9998999999999999998763

>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein

Probab=99.80  E-value=1.6e-19  Score=120.31  Aligned_cols=80  Identities=40%  Similarity=0.674  Sum_probs=68.7

Q ss_pred             hCCCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHH-HhhcCCCCCeEE-EeCCChHHHHHHHHHHHcCCC
Q 030091           85 QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEE-VSTRFRKHDEII-GCQSGKRSMMAATDLLNAGFA  162 (183)
Q Consensus        85 ~~~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~-~~~~i~~~~~iv-~C~~g~~s~~aa~~L~~~G~~  162 (183)
                      ..+..|||+|++.+|..+|||||+|+|+.           +.... ....++++++|| ||.+|.++..+++.|++.||+
T Consensus         8 ~~~~~iiD~R~~~~~~~~~i~ga~~~~~~-----------~~~~~~~~~~~~~~~~vv~~c~~~~~a~~~~~~l~~~G~~   76 (89)
T cd00158           8 DEDAVLLDVREPEEYAAGHIPGAINIPLS-----------ELEERAALLELDKDKPIVVYCRSGNRSARAAKLLRKAGGT   76 (89)
T ss_pred             CCCeEEEECCCHHHHhccccCCCEecchH-----------HHhhHHHhhccCCCCeEEEEeCCCchHHHHHHHHHHhCcc
Confidence            34589999999999999999999999994           22222 244567888999 999999999999999999999


Q ss_pred             CeeEecccHHHHH
Q 030091          163 GITDIAGGFAAWR  175 (183)
Q Consensus       163 ~v~~l~GG~~~W~  175 (183)
                      ++++|.||+.+|.
T Consensus        77 ~v~~l~gG~~~w~   89 (89)
T cd00158          77 NVYNLEGGMLAWK   89 (89)
T ss_pred             cEEEecCChhhcC
Confidence            9999999999994

The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.

>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE

Probab=99.80  E-value=4.4e-19  Score=122.02  Aligned_cols=78  Identities=32%  Similarity=0.557  Sum_probs=66.0

Q ss_pred             CCCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhc--CCCCCeEE-EeCCChHHHHHHHHHHHcCCC
Q 030091           86 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEII-GCQSGKRSMMAATDLLNAGFA  162 (183)
Q Consensus        86 ~~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~--i~~~~~iv-~C~~g~~s~~aa~~L~~~G~~  162 (183)
                      ....+||+|+++||..||||||+|+|+.            .+......  .+++++|| ||.+|.+|..++..|.++||+
T Consensus        17 ~~~~lIDvR~~~ef~~ghIpgAinip~~------------~l~~~l~~~~~~~~~~vvlyC~~G~rS~~aa~~L~~~G~~   84 (101)
T TIGR02981        17 AAEHWIDVRIPEQYQQEHIQGAINIPLK------------EIKEHIATAVPDKNDTVKLYCNAGRQSGMAKDILLDMGYT   84 (101)
T ss_pred             cCCEEEECCCHHHHhcCCCCCCEECCHH------------HHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHcCCC
Confidence            3478999999999999999999999993            33333333  34667898 999999999999999999999


Q ss_pred             CeeEecccHHHHHh
Q 030091          163 GITDIAGGFAAWRQ  176 (183)
Q Consensus       163 ~v~~l~GG~~~W~~  176 (183)
                      +|+++ ||+.+|..
T Consensus        85 ~v~~~-GG~~~~~~   97 (101)
T TIGR02981        85 HAENA-GGIKDIAM   97 (101)
T ss_pred             eEEec-CCHHHhhh
Confidence            99975 99999975

Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.

>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional

Probab=99.79  E-value=5.3e-19  Score=122.15  Aligned_cols=77  Identities=31%  Similarity=0.531  Sum_probs=65.3

Q ss_pred             CCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcC--CCCCeEE-EeCCChHHHHHHHHHHHcCCCC
Q 030091           87 GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEII-GCQSGKRSMMAATDLLNAGFAG  163 (183)
Q Consensus        87 ~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i--~~~~~iv-~C~~g~~s~~aa~~L~~~G~~~  163 (183)
                      +-++||+|+++||..+|||||+|+|+.            .+......+  +++++|| ||++|.+|..++..|.+.||++
T Consensus        20 ~~~lIDvR~~~ef~~ghIpGAiniP~~------------~l~~~l~~l~~~~~~~IVlyC~~G~rS~~aa~~L~~~G~~~   87 (104)
T PRK10287         20 AEHWIDVRVPEQYQQEHVQGAINIPLK------------EVKERIATAVPDKNDTVKLYCNAGRQSGQAKEILSEMGYTH   87 (104)
T ss_pred             CCEEEECCCHHHHhcCCCCccEECCHH------------HHHHHHHhcCCCCCCeEEEEeCCChHHHHHHHHHHHcCCCe
Confidence            368999999999999999999999983            333344443  4567889 9999999999999999999999


Q ss_pred             eeEecccHHHHHh
Q 030091          164 ITDIAGGFAAWRQ  176 (183)
Q Consensus       164 v~~l~GG~~~W~~  176 (183)
                      |++ .||+.+|..
T Consensus        88 v~~-~GG~~~~~~   99 (104)
T PRK10287         88 AEN-AGGLKDIAM   99 (104)
T ss_pred             EEe-cCCHHHHhh
Confidence            987 699999974

>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily

Probab=99.79  E-value=4.4e-19  Score=124.35  Aligned_cols=96  Identities=22%  Similarity=0.390  Sum_probs=73.7

Q ss_pred             ccccHHHHHHHHhCC---CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhc--CCCCCeEE-EeC-C
Q 030091           73 TSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEII-GCQ-S  145 (183)
Q Consensus        73 ~~i~~~~~~~~~~~~---~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~--i~~~~~iv-~C~-~  145 (183)
                      ..|+++++.+++..+   .+|||||+. ||..||||||+|+|+..+.        ..+..+...  .+++++|| ||. +
T Consensus         2 ~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~--------~~~~~~~~~~~~~~~~~iv~yC~~~   72 (113)
T cd01531           2 SYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSWHYPSTRFK--------AQLNQLVQLLSGSKKDTVVFHCALS   72 (113)
T ss_pred             CcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCEecCHHHHh--------hCHHHHHHHHhcCCCCeEEEEeecC
Confidence            457889999988753   689999999 9999999999999984111        112222222  25678899 998 7


Q ss_pred             ChHHHHHHHHHHH--------cCCCCeeEecccHHHHHhC
Q 030091          146 GKRSMMAATDLLN--------AGFAGITDIAGGFAAWRQN  177 (183)
Q Consensus       146 g~~s~~aa~~L~~--------~G~~~v~~l~GG~~~W~~~  177 (183)
                      |.|+..++..|.+        .||.||++|+||+.+|.+.
T Consensus        73 ~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~  112 (113)
T cd01531          73 QVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS  112 (113)
T ss_pred             CcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence            7888888777654        4999999999999999863

Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.

>PRK00142 putative rhodanese-related sulfurtransferase; Provisional

Probab=99.78  E-value=1.2e-18  Score=142.01  Aligned_cols=101  Identities=24%  Similarity=0.345  Sum_probs=80.8

Q ss_pred             CCccccHHHHHHHHhCC-CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChH
Q 030091           71 VPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKR  148 (183)
Q Consensus        71 ~~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~  148 (183)
                      ....++++++.++++++ ++|||||++.||..||||||+|+|+..+.     .....+... ....++++|| ||.+|.|
T Consensus       110 ~~~~is~~el~~~l~~~~~vlIDVR~~~E~~~GhI~GAi~ip~~~~~-----~~~~~l~~~-~~~~kdk~IvvyC~~G~R  183 (314)
T PRK00142        110 VGTYLKPKEVNELLDDPDVVFIDMRNDYEYEIGHFENAIEPDIETFR-----EFPPWVEEN-LDPLKDKKVVMYCTGGIR  183 (314)
T ss_pred             CCcccCHHHHHHHhcCCCeEEEECCCHHHHhcCcCCCCEeCCHHHhh-----hhHHHHHHh-cCCCCcCeEEEECCCCcH
Confidence            34578999999888764 89999999999999999999999984211     011111111 1245788999 9999999


Q ss_pred             HHHHHHHHHHcCCCCeeEecccHHHHHhC
Q 030091          149 SMMAATDLLNAGFAGITDIAGGFAAWRQN  177 (183)
Q Consensus       149 s~~aa~~L~~~G~~~v~~l~GG~~~W~~~  177 (183)
                      +..++..|++.||++|++|+||+.+|.+.
T Consensus       184 s~~aa~~L~~~Gf~~V~~L~GGi~~w~~~  212 (314)
T PRK00142        184 CEKASAWMKHEGFKEVYQLEGGIITYGED  212 (314)
T ss_pred             HHHHHHHHHHcCCCcEEEecchHHHHHHh
Confidence            99999999999999999999999999774

>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily

Probab=99.76  E-value=2.1e-18  Score=120.92  Aligned_cols=93  Identities=25%  Similarity=0.336  Sum_probs=69.2

Q ss_pred             cccHHHHHHHHhCC-------CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcC--CCCCeEE-Ee
Q 030091           74 SVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEII-GC  143 (183)
Q Consensus        74 ~i~~~~~~~~~~~~-------~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i--~~~~~iv-~C  143 (183)
                      .+++++++++++++       .+|||||++ ||..||||||+|+|+...        .+.+......+  .+..+|| ||
T Consensus         3 ~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~~--------~~~~~~~~~~~~~~~~~~iv~~C   73 (113)
T cd01443           3 YISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQSC--------YQTLPQVYALFSLAGVKLAIFYC   73 (113)
T ss_pred             ccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhHH--------HHHHHHHHHHhhhcCCCEEEEEC
Confidence            57889999998764       789999999 999999999999998421        11222222222  3456788 99


Q ss_pred             CC-ChHHHHHHHHHH----HcCC--CCeeEecccHHHHH
Q 030091          144 QS-GKRSMMAATDLL----NAGF--AGITDIAGGFAAWR  175 (183)
Q Consensus       144 ~~-g~~s~~aa~~L~----~~G~--~~v~~l~GG~~~W~  175 (183)
                      .+ |.||..++..|.    +.||  .++++|+||+.+|.
T Consensus        74 ~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~  112 (113)
T cd01443          74 GSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWY  112 (113)
T ss_pred             CCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence            96 678877776544    3475  68999999999995

Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).

>PRK11784 tRNA 2-selenouridine synthase; Provisional

Probab=99.74  E-value=8.7e-18  Score=138.44  Aligned_cols=102  Identities=28%  Similarity=0.430  Sum_probs=76.7

Q ss_pred             HHHHHHHHhCCCEEEEcCCHHhHhcCCCCCcEEeccccccCC----------C---------CCCCHHHH---HHHhhcC
Q 030091           77 VRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGS----------G---------MTKNLKFV---EEVSTRF  134 (183)
Q Consensus        77 ~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~----------~---------~~~~~~~~---~~~~~~i  134 (183)
                      ..++.+++.++.+|||||++.||..||||||+|+|+.+....          +         .+..++..   ......+
T Consensus         5 ~~~~~~~~~~~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l~~~~~~~~~~~   84 (345)
T PRK11784          5 AQDFRALFLNDTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNIAAHREEAWADF   84 (345)
T ss_pred             HHHHHHHHhCCCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhHHHHHHHHHHhc
Confidence            567777777889999999999999999999999999532210          0         11111111   1222233


Q ss_pred             C-CCCeEE-EeC-CChHHHHHHHHHHHcCCCCeeEecccHHHHHhCCC
Q 030091          135 R-KHDEII-GCQ-SGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGL  179 (183)
Q Consensus       135 ~-~~~~iv-~C~-~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~  179 (183)
                      + ++++|| ||. +|.||..+++.|...|| +|++|+||+.+|...++
T Consensus        85 ~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~  131 (345)
T PRK11784         85 PRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVI  131 (345)
T ss_pred             ccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhH
Confidence            3 778899 995 78999999999999999 58999999999987654

>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase

Probab=99.73  E-value=1.3e-17  Score=135.74  Aligned_cols=93  Identities=30%  Similarity=0.433  Sum_probs=69.3

Q ss_pred             CCEEEEcCCHHhHhcCCCCCcEEeccccccCC---CCC-------------------CCHHHHHHHhhcCCCCCeEE-Ee
Q 030091           87 GHRYLDVRTPEEFSAGHATGAINVPYMYRVGS---GMT-------------------KNLKFVEEVSTRFRKHDEII-GC  143 (183)
Q Consensus        87 ~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~---~~~-------------------~~~~~~~~~~~~i~~~~~iv-~C  143 (183)
                      ..+|||||++.||..||||||+|+|+.+....   +..                   ..++.+.......++++.|| ||
T Consensus         2 ~~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~~~~~~vvvyC   81 (311)
T TIGR03167         2 FDPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFADGPPQPLLYC   81 (311)
T ss_pred             CCEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhcCCCCcEEEEE
Confidence            36899999999999999999999999532210   000                   01122333333345565688 99


Q ss_pred             C-CChHHHHHHHHHHHcCCCCeeEecccHHHHHhCCCC
Q 030091          144 Q-SGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLP  180 (183)
Q Consensus       144 ~-~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p  180 (183)
                      . +|.||..+++.|..+|| +|++|+||+.+|...+.+
T Consensus        82 ~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~  118 (311)
T TIGR03167        82 WRGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVID  118 (311)
T ss_pred             CCCChHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhh
Confidence            5 79999999999999999 699999999999887654

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=99.73  E-value=2.1e-17  Score=137.06  Aligned_cols=94  Identities=32%  Similarity=0.531  Sum_probs=77.2

Q ss_pred             CCccccHHHHHHHHhCCCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHh-hcCCCCCeEE-EeCCChH
Q 030091           71 VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS-TRFRKHDEII-GCQSGKR  148 (183)
Q Consensus        71 ~~~~i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~-~~i~~~~~iv-~C~~g~~  148 (183)
                      ....++.+++.++ ..+.+|||||+++||..+|||||+|+|+.           +...... ..++++++|| ||++|.+
T Consensus       259 ~~~~i~~~~~~~~-~~~~~IIDVR~~~ef~~ghIpgAinip~~-----------~l~~~~~~~~~~~~~~IvvyC~~G~r  326 (355)
T PRK05597        259 FGEVLDVPRVSAL-PDGVTLIDVREPSEFAAYSIPGAHNVPLS-----------AIREGANPPSVSAGDEVVVYCAAGVR  326 (355)
T ss_pred             cccccCHHHHHhc-cCCCEEEECCCHHHHccCcCCCCEEeCHH-----------HhhhccccccCCCCCeEEEEcCCCHH
Confidence            3456778888744 45689999999999999999999999994           2211111 2357788899 9999999


Q ss_pred             HHHHHHHHHHcCCCCeeEecccHHHHHh
Q 030091          149 SMMAATDLLNAGFAGITDIAGGFAAWRQ  176 (183)
Q Consensus       149 s~~aa~~L~~~G~~~v~~l~GG~~~W~~  176 (183)
                      |..+++.|++.||++|++|+||+.+|.+
T Consensus       327 S~~Aa~~L~~~G~~nV~~L~GGi~~W~~  354 (355)
T PRK05597        327 SAQAVAILERAGYTGMSSLDGGIEGWLD  354 (355)
T ss_pred             HHHHHHHHHHcCCCCEEEecCcHHHHhh
Confidence            9999999999999999999999999975

>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.73  E-value=4e-17  Score=130.64  Aligned_cols=112  Identities=22%  Similarity=0.263  Sum_probs=93.3

Q ss_pred             CccccHHHHHHHHhC------CCEEEEcCCH--HhHhcCCCCCcEEecccccc-----CCCCCCCHHHHHHHhhc--CCC
Q 030091           72 PTSVPVRVAHELLQA------GHRYLDVRTP--EEFSAGHATGAINVPYMYRV-----GSGMTKNLKFVEEVSTR--FRK  136 (183)
Q Consensus        72 ~~~i~~~~~~~~~~~------~~~lIDvR~~--~e~~~ghIpgAi~ip~~~~~-----~~~~~~~~~~~~~~~~~--i~~  136 (183)
                      ...|+++++.+.+++      ++.+++++..  .+|..+|||||+++++....     ..+++.+++.+...+..  |..
T Consensus        10 ~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~~~GI~~   89 (285)
T COG2897          10 EFLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVPLPHMLPSPEQFAKLLGELGIRN   89 (285)
T ss_pred             ceEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCCCCCCCCCHHHHHHHHHHcCCCC
Confidence            456899999998864      3566666555  89999999999999985443     25788888888888776  788


Q ss_pred             CCeEE-EeCC-ChHHHHHHHHHHHcCCCCeeEecccHHHHHhCCCCCCC
Q 030091          137 HDEII-GCQS-GKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       137 ~~~iv-~C~~-g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      +.+|| |.+. +..|.+++|.|+.+|+++|++|+||+.+|.++|+|++.
T Consensus        90 d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~  138 (285)
T COG2897          90 DDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLET  138 (285)
T ss_pred             CCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccC
Confidence            89999 9864 56688999999999999999999999999999999873

>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase

Probab=99.69  E-value=2.1e-16  Score=113.64  Aligned_cols=101  Identities=19%  Similarity=0.168  Sum_probs=72.8

Q ss_pred             ccHHHHHHHHhC---CCEEEEcCCHHhHhcCCCCCcEEeccccccCC----------CCCCCHHHHHHHhhcCCCCCeEE
Q 030091           75 VPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVGS----------GMTKNLKFVEEVSTRFRKHDEII  141 (183)
Q Consensus        75 i~~~~~~~~~~~---~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~----------~~~~~~~~~~~~~~~i~~~~~iv  141 (183)
                      |+++++.++++.   +.+|||+|+..+|..||||||+|+|+......          .++..++.... +... ++++||
T Consensus         2 is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~-~~~~VV   79 (132)
T cd01446           2 IDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRRRLQGGKILLQQLLSCPEDRDR-LRRG-ESLAVV   79 (132)
T ss_pred             cCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcEecChHHHHHHhhcccchhhhhhcCCHHHHHH-HhcC-CCCeEE
Confidence            688999999874   48999999999999999999999998532210          01222222222 2222 567888


Q ss_pred             -EeCCChH---------HHHHHHHHHH--cCCCCeeEecccHHHHHhC
Q 030091          142 -GCQSGKR---------SMMAATDLLN--AGFAGITDIAGGFAAWRQN  177 (183)
Q Consensus       142 -~C~~g~~---------s~~aa~~L~~--~G~~~v~~l~GG~~~W~~~  177 (183)
                       ||.++.+         +..++..|..  .|+.+|++|+||+.+|.+.
T Consensus        80 vYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~~  127 (132)
T cd01446          80 VYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSSE  127 (132)
T ss_pred             EEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHhh
Confidence             9997764         5566667766  4678899999999999763

This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=99.67  E-value=2.3e-16  Score=131.39  Aligned_cols=92  Identities=17%  Similarity=0.255  Sum_probs=72.2

Q ss_pred             cccHHHHHHHHhCC-CEEEEcCCHHhHhcCCCC---CcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChH
Q 030091           74 SVPVRVAHELLQAG-HRYLDVRTPEEFSAGHAT---GAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKR  148 (183)
Q Consensus        74 ~i~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIp---gAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~  148 (183)
                      .++++++.+++.++ .+|||||+++||..||||   ||+|||+..+...     .++ ......++++ +|| ||.+|.|
T Consensus       272 ~~~~~el~~~l~~~~~~lIDVR~~~E~~~ghI~~~~gAinIPl~~l~~~-----~~~-~~~l~~~~~~-~Ivv~C~sG~R  344 (370)
T PRK05600        272 RTDTTSLIDATLNGSATLLDVREPHEVLLKDLPEGGASLKLPLSAITDD-----ADI-LHALSPIDGD-NVVVYCASGIR  344 (370)
T ss_pred             ccCHHHHHHHHhcCCeEEEECCCHHHhhhccCCCCCccEeCcHHHhhcc-----hhh-hhhccccCCC-cEEEECCCChh
Confidence            68899999988765 789999999999999998   5999998421100     000 1122334555 788 9999999


Q ss_pred             HHHHHHHHHHcCCCC-eeEecccHH
Q 030091          149 SMMAATDLLNAGFAG-ITDIAGGFA  172 (183)
Q Consensus       149 s~~aa~~L~~~G~~~-v~~l~GG~~  172 (183)
                      |..++..|++.||++ |++|.||+.
T Consensus       345 S~~Aa~~L~~~G~~~~v~~l~GG~~  369 (370)
T PRK05600        345 SADFIEKYSHLGHELTLHNLPGGVN  369 (370)
T ss_pred             HHHHHHHHHHcCCCCceEEeccccC
Confidence            999999999999996 999999974

>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]

Probab=99.54  E-value=1.2e-14  Score=117.09  Aligned_cols=169  Identities=21%  Similarity=0.257  Sum_probs=114.4

Q ss_pred             ccchhhhhhc--ccCCCCCCccccCCCCCcceeeeeeecCCcc------cceEEecCCccccccCccc-CCccccCCCCc
Q 030091            3 ATSLISLSSF--AAGASSLPPVLCPHGNNRRGLLSLTVDQQRC------DNIGFISSKILSFCPKASL-RGNLEAVGVPT   73 (183)
Q Consensus         3 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   73 (183)
                      +++.|++.+.  ..+++.|--|..-++..+...++ .+.+.|.      +++...  +|..||.+... ...........
T Consensus       241 ALE~iKli~~~~~~~s~~lllfdg~~~~~r~irlR-~r~~~C~~Cg~n~tit~~~--dYe~fCg~~~~~~~~l~lL~~~~  317 (427)
T KOG2017|consen  241 ALETIKLIAGIGESLSGRLLLFDGLSGHFRTIRLR-SRRPKCAVCGKNPTITSLI--DYELFCGSSATDKCPLKLLEPDE  317 (427)
T ss_pred             HHHHHHHHHccCccCCcceEEEecccceeEEEEec-cCCCCCcccCCCCccCccc--chhcccCCccccccchhcCChhh
Confidence            3444444443  23455566666666666655555 3444443      555444  89999973222 22334456667


Q ss_pred             cccHHHHHHHHhCC--CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCC-CCCeEE-EeCCChHH
Q 030091           74 SVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-KHDEII-GCQSGKRS  149 (183)
Q Consensus        74 ~i~~~~~~~~~~~~--~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~-~~~~iv-~C~~g~~s  149 (183)
                      .|+..+++++++++  .+++|||++.||+..|+|+|+|||+..+....      - +.....++ ..++|+ +|..|..|
T Consensus       318 Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP~avNIPL~~l~~~~------~-~~~~~~~~~~~~~I~ViCrrGNdS  390 (427)
T KOG2017|consen  318 RVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLPEAVNIPLKELRSRS------G-KKLQGDLNTESKDIFVICRRGNDS  390 (427)
T ss_pred             cccHHHHHHHHhcCCCeEEEeccCcceEEEEecccccccchhhhhhhh------h-hhhcccccccCCCEEEEeCCCCch
Confidence            89999999999874  89999999999999999999999995222110      0 11112233 346788 99999999


Q ss_pred             HHHHHHHHHcCCC-CeeEecccHHHHHhCCCCC
Q 030091          150 MMAATDLLNAGFA-GITDIAGGFAAWRQNGLPT  181 (183)
Q Consensus       150 ~~aa~~L~~~G~~-~v~~l~GG~~~W~~~g~pv  181 (183)
                      .++.+.|++...+ +|+.+.||+.+|..+-.|.
T Consensus       391 Q~Av~~Lre~~~~~~vrDvigGl~~w~~~vd~~  423 (427)
T KOG2017|consen  391 QRAVRILREKFPDSSVRDVIGGLKAWAAKVDPN  423 (427)
T ss_pred             HHHHHHHHhhCCchhhhhhhhHHHHHHHhcCcC
Confidence            9999999977654 4678889999998865443

>COG1054 Predicted sulfurtransferase [General function prediction only]

Probab=99.50  E-value=1.9e-14  Score=114.07  Aligned_cols=100  Identities=23%  Similarity=0.331  Sum_probs=82.4

Q ss_pred             CccccHHHHHHHHhCC-CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChHH
Q 030091           72 PTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRS  149 (183)
Q Consensus        72 ~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~s  149 (183)
                      -+.++++++.+++.++ .++||+|+..||+.||..||++.+..     .+-..+.++.+..+.+ ++++|+ ||.+|.|.
T Consensus       112 G~yl~p~~wn~~l~D~~~vviDtRN~YE~~iG~F~gAv~p~~~-----tFrefP~~v~~~~~~~-~~KkVvmyCTGGIRC  185 (308)
T COG1054         112 GTYLSPKDWNELLSDPDVVVIDTRNDYEVAIGHFEGAVEPDIE-----TFREFPAWVEENLDLL-KDKKVVMYCTGGIRC  185 (308)
T ss_pred             cCccCHHHHHHHhcCCCeEEEEcCcceeEeeeeecCccCCChh-----hhhhhHHHHHHHHHhc-cCCcEEEEcCCceee
Confidence            4568899999998764 99999999999999999999999984     2333345555544444 445899 99999999


Q ss_pred             HHHHHHHHHcCCCCeeEecccHHHHHhC
Q 030091          150 MMAATDLLNAGFAGITDIAGGFAAWRQN  177 (183)
Q Consensus       150 ~~aa~~L~~~G~~~v~~l~GG~~~W~~~  177 (183)
                      .++..+|...||++||.|+||+-.+.++
T Consensus       186 EKas~~m~~~GF~eVyhL~GGIl~Y~e~  213 (308)
T COG1054         186 EKASAWMKENGFKEVYHLEGGILKYLED  213 (308)
T ss_pred             hhhHHHHHHhcchhhhcccchHHHHhhh
Confidence            9999999999999999999999988664

>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional

Probab=99.49  E-value=9.7e-14  Score=119.51  Aligned_cols=78  Identities=17%  Similarity=0.247  Sum_probs=66.3

Q ss_pred             HHHHHHhCCCEEEEcCCHHhHhcCCCCC----cEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChHHHHHH
Q 030091           79 VAHELLQAGHRYLDVRTPEEFSAGHATG----AINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSMMAA  153 (183)
Q Consensus        79 ~~~~~~~~~~~lIDvR~~~e~~~ghIpg----Ai~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~s~~aa  153 (183)
                      +..+.+..+.++||||+++||..+||||    |+|+|+.            .+......++++++|| ||.+|.+|..++
T Consensus       399 ~~~~~~~~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~~------------~l~~~~~~l~~~~~iivyC~~G~rS~~aa  466 (482)
T PRK01269        399 ETVSELPPDDVIIDIRSPDEQEDKPLKLEGVEVKSLPFY------------KLSTQFGDLDQSKTYLLYCDRGVMSRLQA  466 (482)
T ss_pred             HHHHhcCCCCEEEECCCHHHHhcCCCCCCCceEEECCHH------------HHHHHHhhcCCCCeEEEECCCCHHHHHHH
Confidence            3444445678999999999999999999    9999994            3444455678888999 999999999999


Q ss_pred             HHHHHcCCCCeeEec
Q 030091          154 TDLLNAGFAGITDIA  168 (183)
Q Consensus       154 ~~L~~~G~~~v~~l~  168 (183)
                      ..|.+.||+||++|.
T Consensus       467 ~~L~~~G~~nv~~y~  481 (482)
T PRK01269        467 LYLREQGFSNVKVYR  481 (482)
T ss_pred             HHHHHcCCccEEecC
Confidence            999999999999875

>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.35  E-value=2.4e-12  Score=103.62  Aligned_cols=98  Identities=23%  Similarity=0.350  Sum_probs=74.2

Q ss_pred             CCCCccccHHHHHHHHhCC-------CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhc---CC---
Q 030091           69 VGVPTSVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR---FR---  135 (183)
Q Consensus        69 ~~~~~~i~~~~~~~~~~~~-------~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~---i~---  135 (183)
                      ......|+++.++.++++.       ++|||+|-+.||..|||+||+||+..           +.+...+-.   ..   
T Consensus       152 ~~~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~-----------~~~~~~f~~~~~~~~~~  220 (325)
T KOG3772|consen  152 SQDLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSK-----------ELLQDFFLLKDGVPSGS  220 (325)
T ss_pred             cccccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccH-----------hhhhhhhcccccccccc
Confidence            3445679999999999752       67999999999999999999999984           333332221   11   


Q ss_pred             CCCeEE-EeC-CChHHHHHHHHHHH------------cCCCCeeEecccHHHHHhC
Q 030091          136 KHDEII-GCQ-SGKRSMMAATDLLN------------AGFAGITDIAGGFAAWRQN  177 (183)
Q Consensus       136 ~~~~iv-~C~-~g~~s~~aa~~L~~------------~G~~~v~~l~GG~~~W~~~  177 (183)
                      +...+| ||. +..|...+|..|+.            +-|..+|+|+||+..|-..
T Consensus       221 ~~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~  276 (325)
T KOG3772|consen  221 KRVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSN  276 (325)
T ss_pred             CceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHh
Confidence            223556 998 77899999999984            2456699999999999654

>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]

Probab=99.33  E-value=8.6e-12  Score=98.58  Aligned_cols=132  Identities=18%  Similarity=0.357  Sum_probs=96.4

Q ss_pred             cceEEecCCccccccCcccCCcccc-CCCC-----ccccHHHHHHHH--------hCCCEEEEcCCHHhHh---------
Q 030091           44 DNIGFISSKILSFCPKASLRGNLEA-VGVP-----TSVPVRVAHELL--------QAGHRYLDVRTPEEFS---------  100 (183)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~i~~~~~~~~~--------~~~~~lIDvR~~~e~~---------  100 (183)
                      +.+.+++||+..|...+........ .+..     ..++...+..+-        ..++..||.|...+|.         
T Consensus       115 ~~VslL~GG~~~Wk~~g~~~~s~~~~~p~~~~~~~~~~d~~il~~~edi~~n~~~~~~~~~~DaRs~grF~Gt~p~~~~~  194 (286)
T KOG1529|consen  115 TKVSLLNGGFRAWKAAGGPVDSSKVETPYSPIVFVASLDNSILATLEDIPFNNLATKNFQYLDARSKGRFDGTEPEPRSG  194 (286)
T ss_pred             cEEEEecCcHHHHHHcCCccccccccCCCCCccchhhcchHHHHHHhhccccccccccceeeeccccccccccCCCCccc
Confidence            5678899999999975554433322 1111     222332222221        2348999999999885         


Q ss_pred             --cCCCCCcEEeccccccC-CCCCCCHHHHHHHhhc--CCCCCeEE-EeCCChHHHHHHHHHHHcCCCCeeEecccHHHH
Q 030091          101 --AGHATGAINVPYMYRVG-SGMTKNLKFVEEVSTR--FRKHDEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAW  174 (183)
Q Consensus       101 --~ghIpgAi~ip~~~~~~-~~~~~~~~~~~~~~~~--i~~~~~iv-~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W  174 (183)
                        .||||||+|+|+..... .++.+.++.+...+..  +..++++| -|+.|..+...+-.|.+.| .++.+|+|++.+|
T Consensus       195 ~~ggHIpGa~n~P~~~~~~~~g~~k~~edl~~~f~~~~l~~~~p~~~sC~~Gisa~~i~~al~r~g-~~~~lYdGS~~Ew  273 (286)
T KOG1529|consen  195 ATGGHIPGAINFPFDEVLDPDGFIKPAEDLKHLFAQKGLKLSKPVIVSCGTGISASIIALALERSG-PDAKLYDGSWTEW  273 (286)
T ss_pred             CcCccCCCcccCChHHhcccccccCCHHHHHHHHHhcCcccCCCEEEeeccchhHHHHHHHHHhcC-CCcceecccHHHH
Confidence              68999999999976664 4455556777766553  66788999 9999999999999999999 6799999999999


Q ss_pred             Hh
Q 030091          175 RQ  176 (183)
Q Consensus       175 ~~  176 (183)
                      ..
T Consensus       274 ~~  275 (286)
T KOG1529|consen  274 AL  275 (286)
T ss_pred             hh
Confidence            85

>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]

Probab=99.30  E-value=2.2e-11  Score=96.27  Aligned_cols=110  Identities=24%  Similarity=0.291  Sum_probs=87.6

Q ss_pred             cccHHHHHHHHhC-CCEEEEcC---------CHHhHhcCCCCCcEEecccccc-----CCCCCCCHHHHHHHhhc--CCC
Q 030091           74 SVPVRVAHELLQA-GHRYLDVR---------TPEEFSAGHATGAINVPYMYRV-----GSGMTKNLKFVEEVSTR--FRK  136 (183)
Q Consensus        74 ~i~~~~~~~~~~~-~~~lIDvR---------~~~e~~~ghIpgAi~ip~~~~~-----~~~~~~~~~~~~~~~~~--i~~  136 (183)
                      .++++.+.+.+.+ +..|||.-         ...||..-|||||+++.++...     ..+++..++.+++..+.  +++
T Consensus         6 iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lGi~n   85 (286)
T KOG1529|consen    6 IVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSPYRHMLPTAEHFAEYASRLGVDN   85 (286)
T ss_pred             ccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCCcccccCccHHHHHHHHHhcCCCC
Confidence            5677788777765 48999983         3457888999999999985443     34667776766666554  667


Q ss_pred             CCeEE-EeC--CChH-HHHHHHHHHHcCCCCeeEecccHHHHHhCCCCCCC
Q 030091          137 HDEII-GCQ--SGKR-SMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       137 ~~~iv-~C~--~g~~-s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      +..+| |.+  .|+. |.+++|.|+-+|+++|.+|+||+.+|+..|+|+++
T Consensus        86 ~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s  136 (286)
T KOG1529|consen   86 GDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDS  136 (286)
T ss_pred             CCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCcccc
Confidence            77888 988  6764 67999999999999999999999999999999863

>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]

Probab=98.64  E-value=8.3e-08  Score=77.15  Aligned_cols=96  Identities=21%  Similarity=0.349  Sum_probs=73.5

Q ss_pred             CCccccHHHHHHHHhCC-------CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhh-c-CCCCCeEE
Q 030091           71 VPTSVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST-R-FRKHDEII  141 (183)
Q Consensus        71 ~~~~i~~~~~~~~~~~~-------~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~-~-i~~~~~iv  141 (183)
                      ..+.|+++.++.+++..       .+|||+|-+.||..|||-.||||.-.           +.+...+- + +.--.-+|
T Consensus       240 s~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~-----------~~l~~~F~hkplThp~aLi  308 (427)
T COG5105         240 SIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNISST-----------KKLGLLFRHKPLTHPRALI  308 (427)
T ss_pred             chhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeeeecchH-----------HHHHHHHHhccccCceeEE
Confidence            34579999999998763       57999999999999999999999874           33333322 2 22234566


Q ss_pred             -EeC-CChHHHHHHHHHHHc------------CCCCeeEecccHHHHHhC
Q 030091          142 -GCQ-SGKRSMMAATDLLNA------------GFAGITDIAGGFAAWRQN  177 (183)
Q Consensus       142 -~C~-~g~~s~~aa~~L~~~------------G~~~v~~l~GG~~~W~~~  177 (183)
                       +|. +..|+...|.+|+..            -|..||+|+||+.++...
T Consensus       309 fHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~n  358 (427)
T COG5105         309 FHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYSN  358 (427)
T ss_pred             EEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhhc
Confidence             998 678999999999863            356699999999987653

>COG2603 Predicted ATPase [General function prediction only]

Probab=97.44  E-value=0.00026  Score=56.73  Aligned_cols=98  Identities=30%  Similarity=0.352  Sum_probs=62.1

Q ss_pred             HHHHHHHHhCCCEEEEcCCHHhHhcCCCCCcEEeccccccCC-----CCCC-C-------------HHHHHHH---hhcC
Q 030091           77 VRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGS-----GMTK-N-------------LKFVEEV---STRF  134 (183)
Q Consensus        77 ~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~-----~~~~-~-------------~~~~~~~---~~~i  134 (183)
                      .+....++.++..+||||.+-||..|+.|+++|+|.......     .... .             .+....+   ...+
T Consensus         5 ~q~~~~~~~~~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask~f   84 (334)
T COG2603           5 EQDYRALLLADTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASKAF   84 (334)
T ss_pred             HHHHHHHHhcCCceeeccchHHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            345566666778999999999999999999999998422210     0000 0             0000111   1111


Q ss_pred             CCCCeEE-EeC-CChHHHHHHHHH-HHcCCCCeeEecccHHHHH
Q 030091          135 RKHDEII-GCQ-SGKRSMMAATDL-LNAGFAGITDIAGGFAAWR  175 (183)
Q Consensus       135 ~~~~~iv-~C~-~g~~s~~aa~~L-~~~G~~~v~~l~GG~~~W~  175 (183)
                      --+.++- +|. +|.||...+.+| ...|++-+. +.||+.+..
T Consensus        85 ~e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~~~r-~iGGeKalr  127 (334)
T COG2603          85 QEENPVGILCARGGLRSKIVQKWLGYAAGIDYPR-VIGGEKALR  127 (334)
T ss_pred             HHhCCcceeeccccchhHHHHHHHHHHHHhhhhh-hhchHHHHH
Confidence            2234444 786 678999999999 777886444 669988754

>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function

Probab=96.80  E-value=0.0073  Score=41.97  Aligned_cols=75  Identities=16%  Similarity=0.191  Sum_probs=38.7

Q ss_pred             cccHHHHHHHHhCC-CEEEEcCCHHhHhc-------------CCCCCcEEeccccccCCCCCCCHHHHHHHhhcCC-CCC
Q 030091           74 SVPVRVAHELLQAG-HRYLDVRTPEEFSA-------------GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-KHD  138 (183)
Q Consensus        74 ~i~~~~~~~~~~~~-~~lIDvR~~~e~~~-------------ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~-~~~  138 (183)
                      .++++++.++.+.| -.||+.|+..|-..             --+ .-+|+|..     .-..+.+.+..+.+.+. ..+
T Consensus        14 Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl-~y~~iPv~-----~~~~~~~~v~~f~~~l~~~~~   87 (110)
T PF04273_consen   14 QPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGL-QYVHIPVD-----GGAITEEDVEAFADALESLPK   87 (110)
T ss_dssp             S--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT--EEEE---------TTT--HHHHHHHHHHHHTTTT
T ss_pred             CCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCC-eEEEeecC-----CCCCCHHHHHHHHHHHHhCCC
Confidence            57889999999998 69999998754210             011 13677763     11233455544443332 245


Q ss_pred             eEE-EeCCChHHHHHHH
Q 030091          139 EII-GCQSGKRSMMAAT  154 (183)
Q Consensus       139 ~iv-~C~~g~~s~~aa~  154 (183)
                      +|+ ||.+|.|+...+.
T Consensus        88 Pvl~hC~sG~Ra~~l~~  104 (110)
T PF04273_consen   88 PVLAHCRSGTRASALWA  104 (110)
T ss_dssp             SEEEE-SCSHHHHHHHH
T ss_pred             CEEEECCCChhHHHHHH
Confidence            888 9999999854443

; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.

>TIGR01244 conserved hypothetical protein TIGR01244

Probab=96.70  E-value=0.0098  Score=42.76  Aligned_cols=84  Identities=19%  Similarity=0.169  Sum_probs=49.9

Q ss_pred             ccccHHHHHHHHhCC-CEEEEcCCHHhHhcCC----------CCCc--EEeccccccCCCCCCCHHHHHHHhhcCC-CCC
Q 030091           73 TSVPVRVAHELLQAG-HRYLDVRTPEEFSAGH----------ATGA--INVPYMYRVGSGMTKNLKFVEEVSTRFR-KHD  138 (183)
Q Consensus        73 ~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~gh----------IpgA--i~ip~~~~~~~~~~~~~~~~~~~~~~i~-~~~  138 (183)
                      ..++++++..+.+.| -.|||.|+..|-....          -+|-  +++|+..     ...+++.+..+...+. .+.
T Consensus        13 ~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~-----~~~~~~~v~~f~~~~~~~~~   87 (135)
T TIGR01244        13 PQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTA-----GDITPDDVETFRAAIGAAEG   87 (135)
T ss_pred             CCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCC-----CCCCHHHHHHHHHHHHhCCC
Confidence            457788888877777 7999999876643211          1232  5666531     1123444444433332 347


Q ss_pred             eEE-EeCCChHHHHHHHHH-HHcCC
Q 030091          139 EII-GCQSGKRSMMAATDL-LNAGF  161 (183)
Q Consensus       139 ~iv-~C~~g~~s~~aa~~L-~~~G~  161 (183)
                      +|+ ||.+|.|+..++..+ ...|.
T Consensus        88 pvL~HC~sG~Rt~~l~al~~~~~g~  112 (135)
T TIGR01244        88 PVLAYCRSGTRSSLLWGFRQAAEGV  112 (135)
T ss_pred             CEEEEcCCChHHHHHHHHHHHHcCC
Confidence            888 999999976655433 33454

No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=95.72  E-value=0.0051  Score=53.66  Aligned_cols=93  Identities=18%  Similarity=0.160  Sum_probs=62.8

Q ss_pred             CCccccHHHHHHHHhCCCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcC-----CCCCeEE-EeC
Q 030091           71 VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-----RKHDEII-GCQ  144 (183)
Q Consensus        71 ~~~~i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i-----~~~~~iv-~C~  144 (183)
                      ..+.++++++..+  ....++|.|...||..+|+++++|+|+.         ..+.....+..+     ...+++| +..
T Consensus       620 ~~prmsAedl~~~--~~l~v~d~r~~~ef~r~~~s~s~nip~~---------~~ea~l~~~~~l~~~~~~~~~~~v~~~~  688 (725)
T KOG1093|consen  620 HCPRISAEDLIWL--KMLYVLDTRQESEFQREHFSDSINIPFN---------NHEADLDWLRFLPGIVCSEGKKCVVVGK  688 (725)
T ss_pred             cCccccHHHHHHH--HHHHHHhHHHHHHHHHhhccccccCCcc---------chHHHHHHhhcchHhHHhhCCeEEEecc
Confidence            3456777777666  4578999999999999999999999994         111111112111     1345555 666


Q ss_pred             CChHHHHHHHHHHHcCCCCeeEecccHHHH
Q 030091          145 SGKRSMMAATDLLNAGFAGITDIAGGFAAW  174 (183)
Q Consensus       145 ~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W  174 (183)
                      ...-+++....+..+-+.+..++.+|+.+.
T Consensus       689 ~~K~~~e~~~~~~~mk~p~~cil~~~~~~~  718 (725)
T KOG1093|consen  689 NDKHAAERLTELYVMKVPRICILHDGFNNI  718 (725)
T ss_pred             chHHHHHHhhHHHHhcccHHHHHHHHHhhc
Confidence            555566667777666677777888988843

>PRK00142 putative rhodanese-related sulfurtransferase; Provisional

Probab=95.65  E-value=0.0012  Score=54.20  Aligned_cols=40  Identities=8%  Similarity=-0.067  Sum_probs=34.7

Q ss_pred             cccHHHHHHHHhCCCEEEEcCCHHhHhcCCCCCcEEeccc
Q 030091           74 SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYM  113 (183)
Q Consensus        74 ~i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAi~ip~~  113 (183)
                      .-+++++.+.+.....++|+|....|..+||||++|+|..
T Consensus        15 i~~~~~~~~~l~~~~~~~d~rg~i~~a~egIngtis~~~~   54 (314)
T PRK00142         15 IEDPEAFRDEHLALCKSLGLKGRILVAEEGINGTVSGTIE   54 (314)
T ss_pred             CCCHHHHHHHHHHHHHHcCCeeEEEEcCCCceEEEEecHH
Confidence            3456788888887788999999999999999999999983

>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]

Probab=94.60  E-value=0.1  Score=44.68  Aligned_cols=83  Identities=16%  Similarity=0.223  Sum_probs=49.3

Q ss_pred             CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHh--------hcCC-----CCCeEEEeCCChH-----H
Q 030091           88 HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS--------TRFR-----KHDEIIGCQSGKR-----S  149 (183)
Q Consensus        88 ~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~--------~~i~-----~~~~iv~C~~g~~-----s  149 (183)
                      ..|||+|+.++|+.||+-.|.|+.-...     +..++.++...        +.+.     .+..+.+-.+|..     -
T Consensus       327 FFiVDcRpaeqynaGHlstaFhlDc~lm-----lqeP~~Fa~av~sLl~aqrqtie~~s~aggeHlcfmGsGr~EED~Ym  401 (669)
T KOG3636|consen  327 FFIVDCRPAEQYNAGHLSTAFHLDCVLM-----LQEPEKFAIAVNSLLCAQRQTIERDSNAGGEHLCFMGSGRDEEDNYM  401 (669)
T ss_pred             EEEEeccchhhcccccchhhhcccHHHH-----hcCHHHHHHHHHHHHHHHHHhhhccccCCcceEEEeccCcchHHHHH
Confidence            7899999999999999999999886321     22222222211        1222     2233334444421     2


Q ss_pred             HHHHHHHHHcCCCCeeEecccHHHHH
Q 030091          150 MMAATDLLNAGFAGITDIAGGFAAWR  175 (183)
Q Consensus       150 ~~aa~~L~~~G~~~v~~l~GG~~~W~  175 (183)
                      ..+...+.+.+-..|..+.||+....
T Consensus       402 nMviA~FlQKnk~yVS~~~GGy~~lh  427 (669)
T KOG3636|consen  402 NMVIAMFLQKNKLYVSFVQGGYKKLH  427 (669)
T ss_pred             HHHHHHHHhcCceEEEEecchHHHHH
Confidence            23334444555556889999998765

>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.97  E-value=0.35  Score=34.01  Aligned_cols=81  Identities=19%  Similarity=0.139  Sum_probs=52.8

Q ss_pred             CCccccHHHHHHHHhCC-CEEEEcCCHHhHh-------------cCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCC-
Q 030091           71 VPTSVPVRVAHELLQAG-HRYLDVRTPEEFS-------------AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-  135 (183)
Q Consensus        71 ~~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~-------------~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~-  135 (183)
                      ....++++++.++...+ .-||--|+..|=.             ..-+. -.+||..     +...+++.++.+...++ 
T Consensus        12 VsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~-y~~iPV~-----~~~iT~~dV~~f~~Al~e   85 (130)
T COG3453          12 VSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLT-YTHIPVT-----GGGITEADVEAFQRALDE   85 (130)
T ss_pred             ecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCc-eEEeecC-----CCCCCHHHHHHHHHHHHH
Confidence            34568889999998888 6789999755432             11122 3456652     33345566666555554 


Q ss_pred             CCCeEE-EeCCChHHHHHHHHHH
Q 030091          136 KHDEII-GCQSGKRSMMAATDLL  157 (183)
Q Consensus       136 ~~~~iv-~C~~g~~s~~aa~~L~  157 (183)
                      -+.+|+ ||.+|.||...+..-.
T Consensus        86 aegPVlayCrsGtRs~~ly~~~~  108 (130)
T COG3453          86 AEGPVLAYCRSGTRSLNLYGLGE  108 (130)
T ss_pred             hCCCEEeeecCCchHHHHHHHHH
Confidence            457899 9999999977665443

>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase

Probab=93.35  E-value=0.31  Score=40.08  Aligned_cols=92  Identities=15%  Similarity=0.081  Sum_probs=55.2

Q ss_pred             eEEecCCccccccCcccC-------CccccCCCCccccHHHHHHHHhC-CCEEEEcCCHHhHhc---CCCC-CcEEeccc
Q 030091           46 IGFISSKILSFCPKASLR-------GNLEAVGVPTSVPVRVAHELLQA-GHRYLDVRTPEEFSA---GHAT-GAINVPYM  113 (183)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~-~~~lIDvR~~~e~~~---ghIp-gAi~ip~~  113 (183)
                      +..+.||+..|.......       .........+.+...++.+.+.+ ++.|||+|+..+|..   |||+ |..  |-.
T Consensus       102 v~~L~GG~~aw~~~~~~~~~~~~~~~~~~vl~g~tg~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs~fG~~~~~~q--psq  179 (311)
T TIGR03167       102 VPRLEGGYKAYRRFVIDQLEELPQPFPLIVLGGMTGSGKTELLHALANAGAQVLDLEGLANHRGSSFGALGLGPQ--PSQ  179 (311)
T ss_pred             EEEecChHHHHHHhhhhhhhccCCCCceeccCCCCCcCHHHHHHHHhcCCCeEEECCchHHhcCcccCCCCCCCC--Cch
Confidence            457889999997521110       11111223455667777777665 489999999999998   8988 431  221


Q ss_pred             cccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCC
Q 030091          114 YRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSG  146 (183)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g  146 (183)
                             ......+...+..+++.++|+ -|.+.
T Consensus       180 -------~~fe~~L~~~l~~~~~~~~i~~e~es~  206 (311)
T TIGR03167       180 -------KRFENALAEALRRLDPGRPIFVEDESR  206 (311)
T ss_pred             -------HHHHHHHHHHHHhCCCCceEEEEeCch
Confidence                   001233334444567777888 77764

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.

>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]

Probab=92.38  E-value=0.19  Score=40.18  Aligned_cols=35  Identities=34%  Similarity=0.410  Sum_probs=28.5

Q ss_pred             cccHHHHHHHHhCC-CEEEEcCCHHhHhcCCCCCcEEecc
Q 030091           74 SVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPY  112 (183)
Q Consensus        74 ~i~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIpgAi~ip~  112 (183)
                      .++++++.+.+..+ .+++|+|+    +..||.+|+|+-+
T Consensus         5 ~~s~~wlnr~l~~~nllllDCRs----es~~i~~A~~val   40 (343)
T KOG1717|consen    5 SKSVAWLNRQLELGNLLLLDCRS----ESSHIESAINVAL   40 (343)
T ss_pred             HHHHHHHHhhcccCceEEEecCC----ccchhhhhhhhcc
Confidence            45677888887654 89999999    6789999998876

>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases

Probab=90.66  E-value=0.9  Score=31.98  Aligned_cols=79  Identities=18%  Similarity=0.198  Sum_probs=40.3

Q ss_pred             HHHHHhCC-CEEEEcCCHHhHhcCCCCC--cEEeccccccCCCCCCCHHHHH----HHhhcCCCCCeEE-EeCCCh-HHH
Q 030091           80 AHELLQAG-HRYLDVRTPEEFSAGHATG--AINVPYMYRVGSGMTKNLKFVE----EVSTRFRKHDEII-GCQSGK-RSM  150 (183)
Q Consensus        80 ~~~~~~~~-~~lIDvR~~~e~~~ghIpg--Ai~ip~~~~~~~~~~~~~~~~~----~~~~~i~~~~~iv-~C~~g~-~s~  150 (183)
                      ...+...+ ..|||+++..++..-+.+|  -.++|+.+....   .....+.    .+......+++|+ +|..|. ||.
T Consensus        20 ~~~L~~~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~---~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~   96 (139)
T cd00127          20 KELLKKLGITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQ---DISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSA   96 (139)
T ss_pred             HHHHHHcCCCEEEEcccCCCCcccCCCCceEEEEEceeCCCC---ChHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhH
Confidence            33444455 6899999888752222232  356666422211   1112222    2222234456788 999885 766


Q ss_pred             H--HHHHHHHcCC
Q 030091          151 M--AATDLLNAGF  161 (183)
Q Consensus       151 ~--aa~~L~~~G~  161 (183)
                      .  ++..+...|+
T Consensus        97 ~~~~~~l~~~~~~  109 (139)
T cd00127          97 TLVIAYLMKTLGL  109 (139)
T ss_pred             HHHHHHHHHHcCC
Confidence            3  3344444554

Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.

>PLN02727 NAD kinase

Probab=88.99  E-value=2.5  Score=39.66  Aligned_cols=81  Identities=15%  Similarity=0.118  Sum_probs=52.2

Q ss_pred             CccccHHHHHHHHhCC-CEEEEcCCHHhHhcCCCC------------CcEEeccccccCCCCCCCHHHHHHHhhcC-C-C
Q 030091           72 PTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHAT------------GAINVPYMYRVGSGMTKNLKFVEEVSTRF-R-K  136 (183)
Q Consensus        72 ~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIp------------gAi~ip~~~~~~~~~~~~~~~~~~~~~~i-~-~  136 (183)
                      ...+++++++++.+.| -.||+.|+..|- .+..+            .-+|+|..    .....+.+.+.++.+.+ + .
T Consensus       266 sgQpspe~la~LA~~GfKTIINLRpd~E~-~q~~~~ee~eAae~~GL~yVhIPVs----~~~apt~EqVe~fa~~l~~sl  340 (986)
T PLN02727        266 GGQVTEEGLKWLLEKGFKTIVDLRAEIVK-DNFYQAAVDDAISSGKIEVVKIPVE----VRTAPSAEQVEKFASLVSDSS  340 (986)
T ss_pred             eCCCCHHHHHHHHHCCCeEEEECCCCCcC-CCchhHHHHHHHHHcCCeEEEeecC----CCCCCCHHHHHHHHHHHHhhc
Confidence            3468899999988888 689999987762 22210            23677762    12234567777766666 3 3


Q ss_pred             CCeEE-EeCCChHHH--HHHHHHH
Q 030091          137 HDEII-GCQSGKRSM--MAATDLL  157 (183)
Q Consensus       137 ~~~iv-~C~~g~~s~--~aa~~L~  157 (183)
                      .++|+ ||.+|.+..  .++.++.
T Consensus       341 pkPVLvHCKSGarRAGamvA~yl~  364 (986)
T PLN02727        341 KKPIYLHSKEGVWRTSAMVSRWKQ  364 (986)
T ss_pred             CCCEEEECCCCCchHHHHHHHHHH
Confidence            57899 999998533  3444443

>smart00195 DSPc Dual specificity phosphatase, catalytic domain

Probab=88.52  E-value=2.1  Score=30.20  Aligned_cols=79  Identities=19%  Similarity=0.193  Sum_probs=40.6

Q ss_pred             HHHHHhCC-CEEEEcCCHHhHh-cCCCCCcEEeccccccCCCCCCCHHHHHHH----hhcCCCCCeEE-EeCCCh-HHHH
Q 030091           80 AHELLQAG-HRYLDVRTPEEFS-AGHATGAINVPYMYRVGSGMTKNLKFVEEV----STRFRKHDEII-GCQSGK-RSMM  151 (183)
Q Consensus        80 ~~~~~~~~-~~lIDvR~~~e~~-~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~----~~~i~~~~~iv-~C~~g~-~s~~  151 (183)
                      +..+.+.+ ..||+++...+.. ...+ --+++|..+..   .....+.+...    ......+.+|+ +|..|. ||..
T Consensus        19 ~~~l~~~gi~~Vi~l~~~~~~~~~~~~-~~~~ipi~D~~---~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~   94 (138)
T smart00195       19 LALLKKLGITHVINVTNEVPNLNKKGF-TYLGVPILDNT---ETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSAT   94 (138)
T ss_pred             HHHHHHcCCCEEEEccCCCCCCCCCCC-EEEEEECCCCC---CCChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHH
Confidence            33444556 6899998765432 1111 23566764311   11112222222    22245667888 999884 7653


Q ss_pred             --HHHHHHHcCCC
Q 030091          152 --AATDLLNAGFA  162 (183)
Q Consensus       152 --aa~~L~~~G~~  162 (183)
                        +++.+...|++
T Consensus        95 v~~~yl~~~~~~~  107 (138)
T smart00195       95 LIIAYLMKYRNLS  107 (138)
T ss_pred             HHHHHHHHHhCCC
Confidence              44455566764

>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B

Probab=87.65  E-value=5.3  Score=29.28  Aligned_cols=92  Identities=20%  Similarity=0.284  Sum_probs=41.9

Q ss_pred             CccccHHHHHHHHhCC-CEEEEcCCHHhHhc---CCCCCc--EEeccccccCC------------------------CCC
Q 030091           72 PTSVPVRVAHELLQAG-HRYLDVRTPEEFSA---GHATGA--INVPYMYRVGS------------------------GMT  121 (183)
Q Consensus        72 ~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~---ghIpgA--i~ip~~~~~~~------------------------~~~  121 (183)
                      ...++.++...+.+-+ -.|||.|++.|...   -.++|.  +|+|.......                        .+.
T Consensus        27 l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~  106 (164)
T PF13350_consen   27 LSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAPRGMLEFYREML  106 (164)
T ss_dssp             -TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHHHHHHHHHHHGG
T ss_pred             cCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchhhHHHHHHHHHH
Confidence            4567888888777666 79999999999874   344455  45555211111                        000


Q ss_pred             -CCHHHHHHHhhcC-CCCCeEE-EeCCCh-H-HHHHHHHHHHcCCCC
Q 030091          122 -KNLKFVEEVSTRF-RKHDEII-GCQSGK-R-SMMAATDLLNAGFAG  163 (183)
Q Consensus       122 -~~~~~~~~~~~~i-~~~~~iv-~C~~g~-~-s~~aa~~L~~~G~~~  163 (183)
                       .....+..++..+ +...+++ +|..|. | ...++-.|.-+|...
T Consensus       107 ~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~alll~~lGV~~  153 (164)
T PF13350_consen  107 ESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAALLLSLLGVPD  153 (164)
T ss_dssp             GSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHHHHTT--H
T ss_pred             HhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHHHHHHcCCCH
Confidence             1123333333332 2336888 999884 4 345666667778753

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=82.50  E-value=1.1  Score=37.37  Aligned_cols=36  Identities=14%  Similarity=-0.003  Sum_probs=28.4

Q ss_pred             CCccccHHHHHHHHh-------CCCEEEEcCCHHhHhcCCCCCc
Q 030091           71 VPTSVPVRVAHELLQ-------AGHRYLDVRTPEEFSAGHATGA  107 (183)
Q Consensus        71 ~~~~i~~~~~~~~~~-------~~~~lIDvR~~~e~~~ghIpgA  107 (183)
                      ....++++++.++++       .+.++||||++. |+..++|+.
T Consensus       275 ~~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~g  317 (339)
T PRK07688        275 HKEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKDG  317 (339)
T ss_pred             CcCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcCC
Confidence            345788888888772       358999999988 999999854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	183
1tq1_A	129	Solution Structure Of At5g66040, A Putative Protein		2e-40
3tp9_A	474	Crystal Structure Of Alicyclobacillus Acidocaldariu		7e-07
2kl3_A	132	Solution Nmr Structure Of The Rhodanese-Like Domain		1e-05
3ilm_A	141	Crystal Structure Of The Alr3790 Protein From Anaba		4e-05
3k9r_A	115	X-Ray Structure Of The Rhodanese-Like Domain Of The		5e-05
3hix_A	106	Crystal Structure Of The Rhodanese_3 Like Domain Fr		5e-05
1gn0_A	108	Escherichia Coli Glpe Sulfurtransferase Soaked With		1e-04
3gk5_A	108	Crystal Structure Of Rhodanese-Related Protein (Tvg		2e-04
3r2u_A	466	2.1 Angstrom Resolution Crystal Structure Of Metall		5e-04

>pdb|1TQ1|A Chain A, Solution Structure Of At5g66040, A Putative Protein From Arabidosis Thaliana Length = 129

Iteration: 1
 Score =  161 bits (408), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 77/113 (68%), Positives = 91/113 (80%), Gaps = 1/113 (0%)
Query: 71  VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV 130
           VP+SV V VAH+LL AGHRYLDVRTPEEFS GHA GAINVPYM R  SGM+KN  F+E+V
Sbjct: 16  VPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFLEQV 75
Query: 131 STRFRKHDEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 182
           S+ F + D II GCQSG RS+ A TDLL+AGF G+ DI GG++AW +NGLPT+
Sbjct: 76  SSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTK 128

>pdb|3TP9|A Chain A, Crystal Structure Of Alicyclobacillus Acidocaldarius Protein With Beta-Lactamase And Rhodanese Domains Length = 474

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 11/107 (10%)
Query: 76  PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR 135
           P  V   L Q G   LDVR  +E++ GH   A ++P        ++K    + +V    R
Sbjct: 378 PDEVRGALAQQGLWLLDVRNVDEWAGGHLPQAHHIP--------LSKLAAHIHDVP---R 426
Query: 136 KHDEIIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 182
                + C++G RS +AA+ L   G   + +  GG+ AWR  G P E
Sbjct: 427 DGSVCVYCRTGGRSAIAASLLRAHGVGDVRNXVGGYEAWRGKGFPVE 473

>pdb|2KL3|A Chain A, Solution Nmr Structure Of The Rhodanese-Like Domain From Anabaena Sp Alr3790 Protein. Northeast Structural Genomics Consortium Target Nsr437a Length = 132

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 12/93 (12%)
Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIGCQSGKRSM 150
           LDVR    ++ GH  GA+ +P               V+  S+   K  +I    +G    
Sbjct: 24  LDVRDRSTYNDGHIMGAMAMPIE-----------DLVDRASSSLEKSRDIYVYGAGDEQT 72
Query: 151 MAATDLL-NAGFAGITDIAGGFAAWRQNGLPTE 182
             A +LL +AGF  ++++ GG AAW+  G PTE
Sbjct: 73  SQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTE 105

>pdb|3ILM|A Chain A, Crystal Structure Of The Alr3790 Protein From Anabaena Sp. Northeast Structural Genomics Consortium Target Nsr437h Length = 141

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIGCQSGKRSM 150
           LDVR    ++ GH  GA   P               V+  S+   K  +I    +G    
Sbjct: 21  LDVRDRSTYNDGHIXGAXAXPIE-----------DLVDRASSSLEKSRDIYVYGAGDEQT 69
Query: 151 MAATDLL-NAGFAGITDIAGGFAAWRQNGLPTE 182
             A +LL +AGF  ++++ GG AAW+  G PTE
Sbjct: 70  SQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTE 102

>pdb|3K9R|A Chain A, X-Ray Structure Of The Rhodanese-Like Domain Of The Alr3790 Protein From Anabaena Sp. Northeast Structural Genomics Consortium Target Nsr437c. Length = 115

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIGCQSGKRSM 150
           LDVR    ++ GH  GA   P               V+  S+   K  +I    +G    
Sbjct: 26  LDVRDRSTYNDGHIXGAXAXPIE-----------DLVDRASSSLEKSRDIYVYGAGDEQT 74
Query: 151 MAATDLL-NAGFAGITDIAGGFAAWRQNGLPTE 182
             A +LL +AGF  ++++ GG AAW+  G PTE
Sbjct: 75  SQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTE 107

>pdb|3HIX|A Chain A, Crystal Structure Of The Rhodanese_3 Like Domain From Anabaena Sp Alr3790 Protein. Northeast Structural Genomics Consortium Target Nsr437i Length = 106

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIGCQSGKRSM 150
           LDVR    ++ GH  GA   P               V+  S+   K  +I    +G    
Sbjct: 17  LDVRDRSTYNDGHIXGAXAXPIE-----------DLVDRASSSLEKSRDIYVYGAGDEQT 65
Query: 151 MAATDLL-NAGFAGITDIAGGFAAWRQNGLPTE 182
             A +LL +AGF  ++++ GG AAW+  G PTE
Sbjct: 66  SQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTE 98

>pdb|1GN0|A Chain A, Escherichia Coli Glpe Sulfurtransferase Soaked With Kcn Length = 108

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 49/109 (44%), Gaps = 13/109 (11%)
Query: 75  VPVRVAHELLQAGHRYL-DVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR 133
           + V  AH+ LQ     L D+R P+ F+ GHA  A ++     +G+ M  N  F   V   
Sbjct: 7   INVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTND-TLGAFMRDN-DFDTPV--- 61
Query: 134 FRKHDEIIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 182
                 ++ C  G  S  AA  LL  G+  +  I GGF AW Q   P E
Sbjct: 62  ------MVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAW-QRQFPAE 103

>pdb|3GK5|A Chain A, Crystal Structure Of Rhodanese-Related Protein (Tvg0868615) From Thermoplasma Volcanium, Northeast Structural Genomics Consortium Target Tvr109a Length = 108

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 12/95 (12%)
Query: 87  GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIGCQSG 146
            +  LDVR P E   G    +IN+P      S + +  K +E    R +K+  I  C  G
Sbjct: 17  AYTVLDVREPFELIFGSIANSINIPI-----SELREKWKILE----RDKKYAVI--CAHG 65
Query: 147 KRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT 181
            RS  AA + L+     I D+ GG  +W + G P 
Sbjct: 66  NRSA-AAVEFLSQLGLNIVDVEGGIQSWIEEGYPV 99

>pdb|3R2U|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp. Aureus Col Length = 466

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 72/169 (42%), Gaps = 40/169 (23%)
Query: 26  HGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQ 85
           HG +  G +++  D+   + IG+     L++  + +L G+   V   T     + ++ + 
Sbjct: 309 HGGHIEGTINIPYDKNFINQIGWY----LNYDQEINLIGDYHLVSKATHTLQLIGYDDI- 363
Query: 86  AGHRY----------------------LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKN 123
           AG++                       LDVR   E++ GH + A++VP+   +       
Sbjct: 364 AGYQLPQSKIQTRSIHSEDITGNESHILDVRNDNEWNNGHLSQAVHVPHGKLL------- 416
Query: 124 LKFVEEVSTRFRKHDEI-IGCQSGKRSMMAATDLLNAGFAGITDIAGGF 171
                E    F K+D I + CQSG RS +A   L + G+  I ++  G+
Sbjct: 417 -----ETDLPFNKNDVIYVHCQSGIRSSIAIGILEHKGYHNIINVNEGY 460

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	183
1tq1_A	129	AT5G66040, senescence-associated family protein; C	4e-46
3hix_A	106	ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q	2e-26
3ilm_A	141	ALR3790 protein; rhodanese-like, NSR437H, NESG, st	7e-26
3d1p_A	139	Putative thiosulfate sulfurtransferase YOR285W; at	4e-22
1gmx_A	108	GLPE protein; transferase, rhodanese, sulfurtransf	4e-21
2k0z_A	110	Uncharacterized protein HP1203; A/B domain, struct	6e-21
1vee_A	134	Proline-rich protein family; hypothetical protein,	1e-19
3eme_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	1e-19
3gk5_A	108	Uncharacterized rhodanese-related protein TVG08686	2e-19
2fsx_A	148	RV0390, COG0607: rhodanese-related sulfurtransfera	3e-19
2hhg_A	139	Hypothetical protein RPA3614; MCSG, structural gen	3e-19
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	6e-19
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	3e-05
1wv9_A	94	Rhodanese homolog TT1651; CDC25, phosphatase, sulf	1e-18
3foj_A	100	Uncharacterized protein; protein SSP1007, structur	1e-18
3nhv_A	144	BH2092 protein; alpha-beta protein, structural gen	2e-18
1qxn_A	137	SUD, sulfide dehydrogenase; polysulfide-sulfur tra	7e-18
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	9e-18
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	2e-14
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	3e-10
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	1e-07
2jtq_A	85	Phage shock protein E; solution structure rhodanes	7e-17
3flh_A	124	Uncharacterized protein LP_1913; alpha-beta protei	7e-17
3g5j_A	134	Putative ATP/GTP binding protein; N-terminal domai	1e-15
3i2v_A	127	Adenylyltransferase and sulfurtransferase MOCS3; r	2e-15
3r2u_A	466	Metallo-beta-lactamase family protein; structural	4e-15
1t3k_A	152	Arath CDC25, dual-specificity tyrosine phosphatase	1e-13
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	4e-11
1c25_A	161	CDC25A; hydrolase, cell cycle phosphatase,dual spe	1e-10
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	2e-10
1qb0_A	211	Protein (M-phase inducer phosphatase 2 (CDC25B));	3e-09
3op3_A	216	M-phase inducer phosphatase 3; structural genomics	4e-08
2j6p_A	152	SB(V)-AS(V) reductase; arsenate reductase, antimon	4e-08
3f4a_A	169	Uncharacterized protein YGR203W; protein phosphata	5e-08
2a2k_A	175	M-phase inducer phosphatase 2; dual specificity, s	7e-08
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	3e-05
2vsw_A	153	Dual specificity protein phosphatase 16; hydrolase	6e-05
2eg4_A	230	Probable thiosulfate sulfurtransferase; structural	6e-05
3hzu_A	318	Thiosulfate sulfurtransferase SSEA; niaid, ssgcid,	9e-04

>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3 Length = 129

 Score =  147 bits (372), Expect = 4e-46
 Identities = 78/117 (66%), Positives = 92/117 (78%), Gaps = 1/117 (0%)

Query: 67  EAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKF 126
           E   VP+SV V VAH+LL AGHRYLDVRTPEEFS GHA GAINVPYM R  SGM+KN  F
Sbjct: 12  EESRVPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDF 71

Query: 127 VEEVSTRFRKHDEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 182
           +E+VS+ F + D II GCQSG RS+ A TDLL+AGF G+ DI GG++AW +NGLPT+
Sbjct: 72  LEQVSSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTK 128

>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A Length = 106

 Score = 96.2 bits (240), Expect = 2e-26
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 12/93 (12%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRS 149
           LDVR    ++ GH  GA+ +P               V+  S+   K  +I       +++
Sbjct: 17  LDVRDRSTYNDGHIMGAMAMPIE-----------DLVDRASSSLEKSRDIYVYGAGDEQT 65

Query: 150 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 182
             A   L +AGF  ++++ GG AAW+  G PTE
Sbjct: 66  SQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTE 98

>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A Length = 141

 Score = 95.6 bits (238), Expect = 7e-26
 Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 18/110 (16%)

Query: 80  AHEL---LQAGHRY---LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR 133
           AH L   L+ G      LDVR    ++ GH  GA+ +P               V+  S+ 
Sbjct: 4   AHVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIE-----------DLVDRASSS 52

Query: 134 FRKHDEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 182
             K  +I       +++  A   L +AGF  ++++ GG AAW+  G PTE
Sbjct: 53  LEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTE 102

>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae} Length = 139

 Score = 86.0 bits (213), Expect = 4e-22
 Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 5/107 (4%)

Query: 80  AHELLQAGHRY---LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR-FR 135
              ++         +DVR P E+S  H   +INVPY     +     L+F +++      
Sbjct: 30  MKRIVGKHDPNVVLVDVREPSEYSIVHIPASINVPYRSHPDAFALDPLEFEKQIGIPKPD 89

Query: 136 KHDEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT 181
              E+I  C SGKR   A     + G++  +   G    W  +G   
Sbjct: 90  SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMNDWVSHGGDK 136

>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A Length = 108

 Score = 82.3 bits (204), Expect = 4e-21
 Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 21/114 (18%)

Query: 74  SVPVRVAHELLQAGHRYL-DVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST 132
            + V  AH+ LQ     L D+R P+ F+ GHA  A ++                 + +  
Sbjct: 6   CINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLT---------------NDTLGA 50

Query: 133 RFRKHDE----IIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 182
             R +D     ++ C  G  S  AA  LL  G+  +  I GGF AW++   P E
Sbjct: 51  FMRDNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQ-FPAE 103

>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori} Length = 110

 Score = 82.0 bits (203), Expect = 6e-21
 Identities = 14/92 (15%), Positives = 37/92 (40%), Gaps = 10/92 (10%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIGCQSGKRSM 150
           +DVR  +E+   H   A  +            + + + +  ++ +    ++ C++G+R++
Sbjct: 20  VDVRELDEYEELHLPNATLISVN---------DQEKLADFLSQHKDKKVLLHCRAGRRAL 70

Query: 151 MAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 182
            AA  +   G+     + G    + + G    
Sbjct: 71  DAAKSMHELGYTPYY-LEGNVYDFEKYGFRMV 101

>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A Length = 134

 Score = 79.7 bits (196), Expect = 1e-19
 Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 9/120 (7%)

Query: 73  TSVPVRVAHELLQA--GHRYLDVRTPEEFSAGHATGAINVPY-MYRVGSGMTKNLKFVEE 129
           +S   + A+  L      + LD+R   +F    +     +                F+++
Sbjct: 5   SSGSAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGEDKPGFLKK 64

Query: 130 VSTRFRKHDE---IIGCQSGKRSMMAATDLLNAGFAGITDIAGGF---AAWRQNGLPTEP 183
           +S +F+  +     I  +    S + A  +   GF     I  G      W  + LP   
Sbjct: 65  LSLKFKDPENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAEGPRGWLNSSLPWIE 124

>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1} Length = 108

 Score = 78.0 bits (193), Expect = 2e-19
 Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 22/110 (20%)

Query: 80  AHELLQAGHRY--LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKH 137
           A +L +    Y  LDVR P E   G    +IN+P               + E+  +++  
Sbjct: 8   AADLYENIKAYTVLDVREPFELIFGSIANSINIP---------------ISELREKWKIL 52

Query: 138 DE----IIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 183
           +      + C  G RS  A   L   G   I D+ GG  +W + G P   
Sbjct: 53  ERDKKYAVICAHGNRSAAAVEFLSQLGLN-IVDVEGGIQSWIEEGYPVVL 101

>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis} Length = 148

 Score = 78.9 bits (194), Expect = 3e-19
 Identities = 31/125 (24%), Positives = 44/125 (35%), Gaps = 24/125 (19%)

Query: 80  AHELLQAG--HRYLDVRTPEEFSAGHATGAINVP----YMYRVGSGMTKNLKFVEEVSTR 133
           A E+L        +DVR   E+         ++     Y+    S  T N  F+ E+  R
Sbjct: 12  AWEMLSDNPRAVLVDVRCEAEWRFVGVPDLSSLGREVVYVEWATSDGTHNDNFLAELRDR 71

Query: 134 FRKHDE------IIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAA------------WR 175
                +      I  C+SG RS+ AA     AG     ++  GF              WR
Sbjct: 72  IPADADQHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFEGHLDAEGHRGATGWR 131

Query: 176 QNGLP 180
             GLP
Sbjct: 132 AVGLP 136

>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris} Length = 139

 Score = 78.5 bits (194), Expect = 3e-19
 Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 19/119 (15%)

Query: 75  VPVRVAHELLQAGHRY---LDVRTPEEFSA-GHATGAINVPYMYRVGSGMTKNLKFVEEV 130
           +    A  L ++G      +D+R P E    G   G+ +         GM   L+F  + 
Sbjct: 24  LTTADAIALHKSGASDVVIVDIRDPREIERDGKIPGSFSCTR------GM---LEFWIDP 74

Query: 131 STRFRKHDE------IIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 183
            + + K         +  C  G RS +AA    + G   +  I GGF AWR  G P E 
Sbjct: 75  QSPYAKPIFQEDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFGAWRDAGGPIEA 133

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} Length = 474

 Score = 82.4 bits (203), Expect = 6e-19
 Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 13/117 (11%)

Query: 67  EAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKF 126
           +        P  V   L Q G   LDVR  +E++ GH   A ++P            L  
Sbjct: 369 DVASYANVSPDEVRGALAQQGLWLLDVRNVDEWAGGHLPQAHHIP------------LSK 416

Query: 127 VEEVSTRFRKHDEI-IGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 182
           +        +   + + C++G RS +AA+ L   G   + ++ GG+ AWR  G P E
Sbjct: 417 LAAHIHDVPRDGSVCVYCRTGGRSAIAASLLRAHGVGDVRNMVGGYEAWRGKGFPVE 473

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} Length = 474

 Score = 42.7 bits (100), Expect = 3e-05
 Identities = 18/106 (16%), Positives = 29/106 (27%), Gaps = 10/106 (9%)

Query: 78  RVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKH 137
                  + G   LDVR  + F+  H  G++N+P+             FV          
Sbjct: 277 PERVRAWREGGVVLDVRPADAFAKRHLAGSLNIPWN----------KSFVTWAGWLLPAD 326

Query: 138 DEIIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 183
             I    +   +      L + G   + D     A  R        
Sbjct: 327 RPIHLLAADAIAPDVIRALRSIGIDDVVDWTDPAAVDRAAPDDVAS 372

>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} Length = 94

 Score = 75.7 bits (187), Expect = 1e-18
 Identities = 23/106 (21%), Positives = 35/106 (33%), Gaps = 19/106 (17%)

Query: 74  SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR 133
            V       LL+ G   +DVR  +  S      A  VP               +E++   
Sbjct: 3   KVRPEELPALLEEGVLVVDVRPADRRSTPLPFAAEWVP---------------LEKIQKG 47

Query: 134 FRKHDE---IIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ 176
                    ++ C+ G  S +AA  L   G+     + GG  A  Q
Sbjct: 48  EHGLPRRPLLLVCEKGLLSQVAALYLEAEGY-EAMSLEGGLQALTQ 92

>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp} Length = 100

 Score = 75.7 bits (187), Expect = 1e-18
 Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 16/110 (14%)

Query: 74  SVPVRVAHELLQAGHRY--LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS 131
           S+ V    E +   +    +DVRT +E + G   GA  +P M  +   +           
Sbjct: 3   SITVTELKEKILDANPVNIVDVRTDQETAMGIIPGAETIP-MNSIPDNLNY--------- 52

Query: 132 TRFRKHDEIIG-CQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLP 180
             F  ++     C++G RS      L   G     ++ GG   +   GL 
Sbjct: 53  --FNDNETYYIICKAGGRSAQVVQYLEQNGVN-AVNVEGGMDEFGDEGLE 99

>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A Length = 144

 Score = 76.4 bits (188), Expect = 2e-18
 Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 15/95 (15%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII---GCQSGK 147
           +DVR  E +   H   AI++P             K  E+ + R  K   II      +  
Sbjct: 37  VDVRDAEAYKECHIPTAISIPGN-----------KINEDTTKRLSKEKVIITYCWGPACN 85

Query: 148 RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 182
            +  AA      GF  + ++ GG   WR+     E
Sbjct: 86  GATKAAAKFAQLGFR-VKELIGGIEYWRKENGEVE 119

>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3 Length = 137

 Score = 74.6 bits (184), Expect = 7e-18
 Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 14/122 (11%)

Query: 67  EAVGVPTSVPVRVAHELLQAGHRY--LDVRTPEEFSAGH---ATGAINVPYMYRVGSGMT 121
            A      +  + A++LLQ       +DVR P+E  A          ++        G  
Sbjct: 17  AAKADMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSR------GK- 69

Query: 122 KNLKFVEEVSTRFRKHDEIIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPT 181
             L+ +   S    +   ++ C++  R+ +A   L   GF  I +  GG   W + GLP+
Sbjct: 70  --LEPLLAKSGLDPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPS 127

Query: 182 EP 183
             
Sbjct: 128 LD 129

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 79.0 bits (194), Expect = 9e-18
 Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 13/108 (12%)

Query: 76  PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR 135
           P  +A  L + G R LD      ++  H  GA  V                +++   R  
Sbjct: 381 PTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVL------------RSQLKQALERLG 428

Query: 136 KHDEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 182
             +  +  C S   +  A  ++       +  + GG +AW   GLPTE
Sbjct: 429 TAERYVLTCGSSLLARFAVAEVQALSGKPVFLLDGGTSAWVAAGLPTE 476

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 69.8 bits (170), Expect = 2e-14
 Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 18/115 (15%)

Query: 73  TSVPVRVAHEL---LQAGHRY--LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFV 127
           + + VR  H++   L A      LDVR  + F+  H   A N+P             +  
Sbjct: 4   SQIAVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLS-----------RLE 52

Query: 128 EEVSTRF-RKHDEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLP 180
            E+  R  R+   I         + +AA  L + G++ +  + GG + WR  G  
Sbjct: 53  LEIHARVPRRDTPITVYDDGEGLAPVAAQRLHDLGYSDVALLDGGLSGWRNAGGE 107

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 57.0 bits (137), Expect = 3e-10
 Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 10/95 (10%)

Query: 85  QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIGCQ 144
           +A    LD R  +E+      G I+VP        + +  +   +  TR      I+ C 
Sbjct: 144 RAEAVILDARRFDEYQTMSIPGGISVPG----AELVLRVAELAPDPRTRV-----IVNCA 194

Query: 145 SGKRSMMAATDLLNAGFA-GITDIAGGFAAWRQNG 178
              RS++    LLNAG    +  +  G   W   G
Sbjct: 195 GRTRSIIGTQSLLNAGIPNPVAALRNGTIGWTLAG 229

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 49.7 bits (118), Expect = 1e-07
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 9/77 (11%)

Query: 85  QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIGCQ 144
                 LDVRTPEE+ AGH  G+ + P     G  + +          R      ++   
Sbjct: 280 DRTTYLLDVRTPEEYEAGHLPGSRSTP----GGQLVQETDHVASVRGARL-----VLVDD 330

Query: 145 SGKRSMMAATDLLNAGF 161
            G R+ M+A+ L   G+
Sbjct: 331 DGVRANMSASWLAQMGW 347

>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A Length = 85

 Score = 70.7 bits (174), Expect = 7e-17
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 22/96 (22%)

Query: 87  GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-----KHDEII 141
              ++DVR PE++   H  GAIN+P               ++EV  R       K+D + 
Sbjct: 1   AEHWIDVRVPEQYQQEHVQGAINIP---------------LKEVKERIATAVPDKNDTVK 45

Query: 142 G-CQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ 176
             C +G++S  A   L   G+  + +  GG      
Sbjct: 46  VYCNAGRQSGQAKEILSEMGYTHVENA-GGLKDIAM 80

>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A Length = 124

 Score = 72.0 bits (177), Expect = 7e-17
 Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 25/114 (21%)

Query: 79  VAHELLQAGHRY--LDVRT-PEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR 135
           V  ++  A  +Y  LDVR  P +       GAI +P                ++++TR  
Sbjct: 22  VLADMQNATGKYVVLDVRNAPAQVKKDQIKGAIAMP---------------AKDLATRIG 66

Query: 136 KHDE----IIGCQSGKRSMM--AATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 183
           + D     ++   +G  ++   A   LL+AGF    ++AG    W+   LP E 
Sbjct: 67  ELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFE-AYELAGALEGWKGMQLPLEH 119

>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile} Length = 134

 Score = 68.6 bits (167), Expect = 1e-15
 Identities = 24/125 (19%), Positives = 39/125 (31%), Gaps = 25/125 (20%)

Query: 76  PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMY-----RVGSGMTKN------- 123
            +++   L      ++DVRT  E+   H   AIN+P         VG+            
Sbjct: 6   VIKIEKALKLDKVIFVDVRTEGEYEEDHILNAINMPLFKNNEHNEVGTIYKMQGKHEAIQ 65

Query: 124 --LKFVEEVSTRFRKHDE----------IIGCQSGKRSMMAATDLLNAGFAGITDIAGGF 171
               +V                      I   + G RS      L + G   +  + GG+
Sbjct: 66  KGFDYVSYKLKDIYLQAAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVN-VYQLEGGY 124

Query: 172 AAWRQ 176
            A+R 
Sbjct: 125 KAYRN 129

>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens} Length = 127

 Score = 68.6 bits (168), Expect = 2e-15
 Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 16/115 (13%)

Query: 77  VRVAHELLQAGHRY--LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF 134
           V     LL +G  +  LDVR   E        A+++P +  +     ++LK ++E     
Sbjct: 5   VTDYKRLLDSGAFHLLLDVRPQVEVDICRLPHALHIP-LKHLERRDAESLKLLKEAIWEE 63

Query: 135 RKHDE-------IIGCQSGKRSMMAATDLLNAGFAG------ITDIAGGFAAWRQ 176
           ++  +        + C+ G  S  A   L +   A       + D+ GG  AW  
Sbjct: 64  KQGTQEGAAVPIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLMAWAA 118

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus} Length = 466

 Score = 71.2 bits (174), Expect = 4e-15
 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 13/88 (14%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEI-IGCQSGKRS 149
           LDVR   E++ GH + A++VP               + E    F K+D I + CQSG RS
Sbjct: 391 LDVRNDNEWNNGHLSQAVHVP------------HGKLLETDLPFNKNDVIYVHCQSGIRS 438

Query: 150 MMAATDLLNAGFAGITDIAGGFAAWRQN 177
            +A   L + G+  I ++  G+   + +
Sbjct: 439 SIAIGILEHKGYHNIINVNEGYKDIQLS 466

>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1 Length = 152

 Score = 63.8 bits (155), Expect = 1e-13
 Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 19/121 (15%)

Query: 73  TSVPVRVAHELLQAGHRYL-DVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS 131
           + +       L +  +  + DVR  E    GH  G+++        SG   +   +  + 
Sbjct: 28  SYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYA------SGSFDDK--ISHLV 79

Query: 132 TRFRKHDEII--GCQSGKRSMMAATDLL--------NAGFAGITDIAGGFAAWRQNGLPT 181
              +  D ++     S  R    A  L+        + G   I  +  GF  W  +G P 
Sbjct: 80  QNVKDKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPV 139

Query: 182 E 182
            
Sbjct: 140 C 140

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588

 Score = 59.9 bits (146), Expect = 4e-11
 Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 20/110 (18%)

Query: 70  GVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEE 129
           G   +V       +++ G   +DVR P E   G   G+IN+P               ++E
Sbjct: 486 GFVDTVQWHEIDRIVENGGYLIDVREPNELKQGMIKGSINIP---------------LDE 530

Query: 130 VSTRFRKHDE----IIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWR 175
           +  R  +        I CQ G R  +AA  L+  G+  + ++ GGF  + 
Sbjct: 531 LRDRLEEVPVDKDIYITCQLGMRGYVAARMLMEKGYK-VKNVDGGFKLYG 579

>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1 Length = 161

 Score = 56.6 bits (136), Expect = 1e-10
 Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 15/98 (15%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIGCQ-SGKRS 149
           +D R P E+  GH  GA+N+     V   + K       V T  ++   +  C+ S +R 
Sbjct: 48  IDCRYPYEYEGGHIKGAVNLHMEEEVEDFLLKK----PIVPTDGKRVIVVFHCEFSSERG 103

Query: 150 MMAATDLLNA----------GFAGITDIAGGFAAWRQN 177
                 +              +  +  + GG+  +   
Sbjct: 104 PRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMK 141

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565

 Score = 57.6 bits (140), Expect = 2e-10
 Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 22/102 (21%)

Query: 80  AHELLQAGHRY--LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKH 137
             ++         LDVR P E   G   GA+N+P               V+E+  R  + 
Sbjct: 477 FDQIDNLSEDQLLLDVRNPGELQNGGLEGAVNIP---------------VDELRDRMHEL 521

Query: 138 DE----IIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWR 175
            +    II  Q G R  +A   L+N G+    ++ GG+  ++
Sbjct: 522 PKDKEIIIFSQVGLRGNVAYRQLVNNGYR-ARNLIGGYRTYK 562

>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A Length = 211

 Score = 53.2 bits (127), Expect = 3e-09
 Identities = 15/100 (15%), Positives = 33/100 (33%), Gaps = 18/100 (18%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII--GCQ-SGK 147
           +D R P E+  GH   A+N+P          ++      ++        I+   C+ S +
Sbjct: 69  VDCRYPYEYEGGHIKTAVNLPL-----ERDAESFLLKSPIAPCSLDKRVILIFHCEFSSE 123

Query: 148 RSMMAATDL----------LNAGFAGITDIAGGFAAWRQN 177
           R       +           +  +  +  + GG+  +   
Sbjct: 124 RGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQ 163

>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens} Length = 216

 Score = 50.5 bits (120), Expect = 4e-08
 Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 18/100 (18%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII---GCQSGK 147
           +D R P E+  GH  GA+N+            N    + +     +   II      S +
Sbjct: 82  IDCRYPYEYLGGHIQGALNLYS-----QEELFNFFLKKPIVPLDTQKRIIIVFHCEFSSE 136

Query: 148 RSMMAATDLLNA----------GFAGITDIAGGFAAWRQN 177
           R       L              +  +  + GG+  +   
Sbjct: 137 RGPRMCRCLREEDRSLNQYPALYYPELYILKGGYRDFFPE 176

>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major} Length = 152

 Score = 49.3 bits (117), Expect = 4e-08
 Identities = 22/109 (20%), Positives = 35/109 (32%), Gaps = 17/109 (15%)

Query: 81  HELLQAGHRY-----LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR 135
            ELL           +D R   +   G    +IN+P +        K  K + E     +
Sbjct: 13  VELLDNPDSLVKAAVIDCR-DSDRDCGFIVNSINMPTISCTEEMYEKLAKTLFE----EK 67

Query: 136 KHDEIIGC-QSGKRSMMAATDL------LNAGFAGITDIAGGFAAWRQN 177
           K   +  C QS  R+   A         L      +  + GG+ A+   
Sbjct: 68  KELAVFHCAQSLVRAPKGANRFALAQKKLGYVLPAVYVLRGGWEAFYHM 116

>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A* Length = 169

 Score = 49.4 bits (117), Expect = 5e-08
 Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 11/98 (11%)

Query: 91  LDVRTPEEFSAGHATGAINVPY--MYRVGSGMTKNLKFVEEVSTRFRKHDEII--GCQSG 146
           +DVR   ++  GH     +  Y  + +    + +    + E     R    +I     S 
Sbjct: 57  VDVR-GSDYMGGHIKDGWHYAYSRLKQDPEYLRELKHRLLEKQADGRGALNVIFHCMLSQ 115

Query: 147 KRSMMAATDLLNA------GFAGITDIAGGFAAWRQNG 178
           +R   AA  LL +          +  + GGF+ W+   
Sbjct: 116 QRGPSAAMLLLRSLDTAELSRCRLWVLRGGFSRWQSVY 153

>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A Length = 175

 Score = 49.2 bits (117), Expect = 7e-08
 Identities = 14/100 (14%), Positives = 32/100 (32%), Gaps = 18/100 (18%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIG--CQ-SGK 147
           +D R P E+  GH   A+N+P          ++      ++        I+    + S +
Sbjct: 49  VDCRYPYEYEGGHIKTAVNLPL-----ERDAESFLLKSPIAPCSLDKRVILIFHSEFSSE 103

Query: 148 RSMMAATDL----------LNAGFAGITDIAGGFAAWRQN 177
           R       +           +  +  +  + GG+  +   
Sbjct: 104 RGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQ 143

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X Length = 271

 Score = 42.2 bits (100), Expect = 3e-05
 Identities = 25/122 (20%), Positives = 41/122 (33%), Gaps = 23/122 (18%)

Query: 79  VAHELLQAGHRYLDVRTPEEFS--------AGHATGAINVPYMYRVGSGMTKNLKFVEEV 130
           +   L  A     D R+P+E+          GH  GA+N  +   +       L+   ++
Sbjct: 154 LLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTAAMDPSRA--LRIRTDI 211

Query: 131 STRF-----RKHDEIIG-CQSGKRSMMAATDLLNAGFAGITDIA---GGFAAW-RQNGLP 180
           + R          EI+  CQ+  R   +    L A   G   +    G +  W      P
Sbjct: 212 AGRLEELGITPDKEIVTHCQTHHR---SGLTYLIAKALGYPRVKGYAGSWGEWGNHPDTP 268

Query: 181 TE 182
            E
Sbjct: 269 VE 270

>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual specificity phosphatase, nucleus, cytoplasm, rhodanese domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A Length = 153

 Score = 40.6 bits (94), Expect = 6e-05
 Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 19/115 (16%)

Query: 81  HELLQAGHRY---LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRK- 136
             LL++G      +D R   E++  H   AIN+     +   + ++   + E+     K 
Sbjct: 12  VALLESGTEKVLLIDSRPFVEYNTSHILEAININCSKLMKRRLQQDKVLITELIQHSAKH 71

Query: 137 ------------HDEIIGCQSGKRSMMAATDLLNAGFAGITDI---AGGFAAWRQ 176
                       +D+     +   S    T LL         +   AGGFA + +
Sbjct: 72  KVDIDCSQKVVVYDQSSQDVASLSSDCFLTVLLGKLEKSFNSVHLLAGGFAEFSR 126

>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A Length = 230

 Score = 41.0 bits (97), Expect = 6e-05
 Identities = 32/137 (23%), Positives = 41/137 (29%), Gaps = 41/137 (29%)

Query: 72  PTSVPVRVAHELL------QAGHRYLDVRTPEEFS----------AGHATGAINVPYMYR 115
            T V  ++  + L            LDVR+PEEF            G   G+ N P    
Sbjct: 110 RTEVVAKLRRDWLLTADEAARHPLLLDVRSPEEFQGKVHPPCCPRGGRIPGSKNAPLE-- 167

Query: 116 VGSGMTKNLKFVEEVSTRFR-----KHDEIIG-CQSGKRSMMAATDLLNAGFAGITDIA- 168
                     F+                E+   C SG R   +A         G+     
Sbjct: 168 ---------LFLSP-EGLLERLGLQPGQEVGVYCHSGAR---SAVAFFVLRSLGV-RARN 213

Query: 169 --GGFAAWRQNGLPTEP 183
             G    W Q GLPTEP
Sbjct: 214 YLGSMHEWLQEGLPTEP 230

>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A Length = 318

 Score = 38.0 bits (89), Expect = 9e-04
 Identities = 27/148 (18%), Positives = 52/148 (35%), Gaps = 34/148 (22%)

Query: 63  RGNLEAVGVPTSVPVRVAHELLQA--GHRYLDVRTPEEFS----------------AGHA 104
                 V    +       ++L        +DVR+PEE++                AGH 
Sbjct: 166 CTGYPVVQRNDAPIRAFRDDVLAILGAQPLIDVRSPEEYTGKRTHMPDYPEEGALRAGHI 225

Query: 105 TGAINVPYMYRVGSGMTKN--LKFVEEVSTRFR---KHDEIIG-CQSGKRSMMAATDLLN 158
             A+++P+    G    ++   +  EE+   +      D+ +  C+ G+RS  + T  + 
Sbjct: 226 PTAVHIPW----GKAADESGRFRSREELERLYDFINPDDQTVVYCRIGERS--SHTWFVL 279

Query: 159 AGFAGITDIA---GGFAAW-RQNGLPTE 182
               G  D+    G +  W     +P  
Sbjct: 280 THLLGKADVRNYDGSWTEWGNAVRVPIV 307

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	183
1tq1_A	129	AT5G66040, senescence-associated family protein; C	99.95
3iwh_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	99.95
3gk5_A	108	Uncharacterized rhodanese-related protein TVG08686	99.94
3foj_A	100	Uncharacterized protein; protein SSP1007, structur	99.94
3eme_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	99.94
1gmx_A	108	GLPE protein; transferase, rhodanese, sulfurtransf	99.94
3hix_A	106	ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q	99.93
3d1p_A	139	Putative thiosulfate sulfurtransferase YOR285W; at	99.93
3ilm_A	141	ALR3790 protein; rhodanese-like, NSR437H, NESG, st	99.93
2hhg_A	139	Hypothetical protein RPA3614; MCSG, structural gen	99.93
1qxn_A	137	SUD, sulfide dehydrogenase; polysulfide-sulfur tra	99.92
1wv9_A	94	Rhodanese homolog TT1651; CDC25, phosphatase, sulf	99.92
3flh_A	124	Uncharacterized protein LP_1913; alpha-beta protei	99.91
3nhv_A	144	BH2092 protein; alpha-beta protein, structural gen	99.91
1urh_A	280	3-mercaptopyruvate sulfurtransferase; rhodanese; 2	99.91
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	99.91
1rhs_A	296	Sulfur-substituted rhodanese; transferase, sulfurt	99.9
2k0z_A	110	Uncharacterized protein HP1203; A/B domain, struct	99.9
3hzu_A	318	Thiosulfate sulfurtransferase SSEA; niaid, ssgcid,	99.9
1uar_A	285	Rhodanese; sulfurtransferase, riken structural gen	99.9
3olh_A	302	MST, 3-mercaptopyruvate sulfurtransferase; structu	99.9
2fsx_A	148	RV0390, COG0607: rhodanese-related sulfurtransfera	99.89
3aay_A	277	Putative thiosulfate sulfurtransferase; sulfurtran	99.89
1t3k_A	152	Arath CDC25, dual-specificity tyrosine phosphatase	99.89
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	99.89
3g5j_A	134	Putative ATP/GTP binding protein; N-terminal domai	99.88
3i2v_A	127	Adenylyltransferase and sulfurtransferase MOCS3; r	99.88
2jtq_A	85	Phage shock protein E; solution structure rhodanes	99.87
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	99.87
1urh_A	280	3-mercaptopyruvate sulfurtransferase; rhodanese; 2	99.87
1vee_A	134	Proline-rich protein family; hypothetical protein,	99.87
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	99.87
3hzu_A	318	Thiosulfate sulfurtransferase SSEA; niaid, ssgcid,	99.87
1c25_A	161	CDC25A; hydrolase, cell cycle phosphatase,dual spe	99.86
1qb0_A	211	Protein (M-phase inducer phosphatase 2 (CDC25B));	99.86
3aay_A	277	Putative thiosulfate sulfurtransferase; sulfurtran	99.86
2a2k_A	175	M-phase inducer phosphatase 2; dual specificity, s	99.86
1rhs_A	296	Sulfur-substituted rhodanese; transferase, sulfurt	99.86
2wlr_A	423	Putative thiosulfate sulfurtransferase YNJE; rhoda	99.85
3olh_A	302	MST, 3-mercaptopyruvate sulfurtransferase; structu	99.85
3op3_A	216	M-phase inducer phosphatase 3; structural genomics	99.85
1uar_A	285	Rhodanese; sulfurtransferase, riken structural gen	99.85
2eg4_A	230	Probable thiosulfate sulfurtransferase; structural	99.84
2vsw_A	153	Dual specificity protein phosphatase 16; hydrolase	99.84
4f67_A	265	UPF0176 protein LPG2838; structural genomics, PSI-	99.84
2j6p_A	152	SB(V)-AS(V) reductase; arsenate reductase, antimon	99.83
1okg_A	373	Possible 3-mercaptopyruvate sulfurtransferase; rho	99.83
1okg_A	373	Possible 3-mercaptopyruvate sulfurtransferase; rho	99.83
2ouc_A	142	Dual specificity protein phosphatase 10; rhodanese	99.83
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	99.82
2wlr_A	423	Putative thiosulfate sulfurtransferase YNJE; rhoda	99.82
3f4a_A	169	Uncharacterized protein YGR203W; protein phosphata	99.8
1hzm_A	154	Dual specificity protein phosphatase 6; hydrolase;	99.79
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	99.79
3tg1_B	158	Dual specificity protein phosphatase 10; kinase/rh	99.78
3utn_X	327	Thiosulfate sulfurtransferase TUM1; rhodanese-like	99.78
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	99.77
2eg4_A	230	Probable thiosulfate sulfurtransferase; structural	99.74
1whb_A	157	KIAA0055; deubiqutinating enzyme, UBPY, structural	99.72
2gwf_A	157	Ubiquitin carboxyl-terminal hydrolase 8; protein-p	99.72
3r2u_A	466	Metallo-beta-lactamase family protein; structural	99.71
3utn_X	327	Thiosulfate sulfurtransferase TUM1; rhodanese-like	99.7
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	99.69
3r2u_A	466	Metallo-beta-lactamase family protein; structural	99.39
2f46_A	156	Hypothetical protein; structural genomics, joint c	97.9
4erc_A	150	Dual specificity protein phosphatase 23; alpha bet	93.93
1v8c_A	168	MOAD related protein; riken structural genomics/pr	93.66
2img_A	151	Dual specificity protein phosphatase 23; DUSP23, V	91.7
1xri_A	151	AT1G05000; structural genomics, protein structure	88.11
2nt2_A	145	Protein phosphatase slingshot homolog 2; alpha/bet	86.48
1fpz_A	212	Cyclin-dependent kinase inhibitor 3; alpha-beta sa	86.15
2r0b_A	154	Serine/threonine/tyrosine-interacting protein; str	85.79
3ezz_A	144	Dual specificity protein phosphatase 4; alpha/beta	85.62
2hcm_A	164	Dual specificity protein phosphatase; structural g	84.33
1yz4_A	160	DUSP15, dual specificity phosphatase-like 15 isofo	84.21
1ywf_A	296	Phosphotyrosine protein phosphatase PTPB; four str	81.78
1wrm_A	165	Dual specificity phosphatase 22; DSP, JNK, hydrola	80.79

>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3

Probab=99.95  E-value=3.5e-28  Score=173.50  Aligned_cols=116  Identities=66%  Similarity=1.101  Sum_probs=101.5

Q ss_pred             cCCCCccccHHHHHHHHhCCCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCC
Q 030091           68 AVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSG  146 (183)
Q Consensus        68 ~~~~~~~i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g  146 (183)
                      .......|+++++.++++++++|||||++.||..||||||+|||+......+.+...+++......++++++|| ||.+|
T Consensus        13 ~~~~~~~is~~e~~~~l~~~~~lIDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivvyC~~G   92 (129)
T 1tq1_A           13 ESRVPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFLEQVSSHFGQSDNIIVGCQSG   92 (129)
T ss_dssp             CSCCCEEEEHHHHHHHHHHTCCEEEESCHHHHHHCCBTTBEECCSCCCSTTTCCCTTTHHHHHTTTCCTTSSEEEEESSC
T ss_pred             hcCCCcccCHHHHHHHhcCCCEEEECCCHHHHhcCCCCCcEECcHhhcccccccCCHHHHHHHHhhCCCCCeEEEECCCC
Confidence            34455689999999998877899999999999999999999999965554555556677777777788999999 99999


Q ss_pred             hHHHHHHHHHHHcCCCCeeEecccHHHHHhCCCCCCC
Q 030091          147 KRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       147 ~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      .||..+++.|++.||+||++|+||+.+|..+|+|+++
T Consensus        93 ~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  129 (129)
T 1tq1_A           93 GRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTKA  129 (129)
T ss_dssp             SHHHHHHHHHHHHHCCSEEEEECCHHHHHHHTCCCC-
T ss_pred             cHHHHHHHHHHHcCCCCeEEeCCcHHHHHhCCCCCCC
Confidence            9999999999999999999999999999999999874

>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A

Probab=99.95  E-value=1.3e-28  Score=169.33  Aligned_cols=98  Identities=26%  Similarity=0.402  Sum_probs=86.6

Q ss_pred             ccccHHHHHHHHhCC--CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChHH
Q 030091           73 TSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRS  149 (183)
Q Consensus        73 ~~i~~~~~~~~~~~~--~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~s  149 (183)
                      ..|+++++++++.++  ++|||||++.||..||||||+|+|+.            .+......++++++|| ||.+|.||
T Consensus         2 k~Is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~------------~l~~~~~~l~~~~~ivv~C~~G~rS   69 (103)
T 3iwh_A            2 KSITTDELKNKLLESKPVQIVDVRTDEETAMGYIPNAKLIPMD------------TIPDNLNSFNKNEIYYIVCAGGVRS   69 (103)
T ss_dssp             CEECHHHHHHGGGSSSCCEEEECSCHHHHTTCBCTTCEECCGG------------GGGGCGGGCCTTSEEEEECSSSSHH
T ss_pred             CCcCHHHHHHHHhCCCCeEEEECCChhHHhcCccCCcccCccc------------chhhhhhhhcCCCeEEEECCCCHHH
Confidence            468999999988654  89999999999999999999999994            3344456789999999 99999999


Q ss_pred             HHHHHHHHHcCCCCeeEecccHHHHHhCCCCCCC
Q 030091          150 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       150 ~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      ..++..|++.||+++ +|.||+.+|.++|+|+++
T Consensus        70 ~~aa~~L~~~G~~~~-~l~GG~~~W~~~g~pves  102 (103)
T 3iwh_A           70 AKVVEYLEANGIDAV-NVEGGMHAWGDEGLEIKS  102 (103)
T ss_dssp             HHHHHHHHTTTCEEE-EETTHHHHHCSSSCBCCC
T ss_pred             HHHHHHHHHcCCCEE-EecChHHHHHHCCCccee
Confidence            999999999999755 699999999999999985

>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}

Probab=99.94  E-value=4.3e-27  Score=162.95  Aligned_cols=98  Identities=29%  Similarity=0.426  Sum_probs=90.1

Q ss_pred             CccccHHHHHHHHhCCCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChHHH
Q 030091           72 PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSM  150 (183)
Q Consensus        72 ~~~i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~s~  150 (183)
                      ...|+++++.+++++ ++|||||++.||..||||||+|+|+            +.+......++++++|| ||.+|.||.
T Consensus         3 ~~~is~~el~~~l~~-~~iiDvR~~~e~~~ghIpgA~~ip~------------~~l~~~~~~l~~~~~ivvyC~~G~rs~   69 (108)
T 3gk5_A            3 YRSINAADLYENIKA-YTVLDVREPFELIFGSIANSINIPI------------SELREKWKILERDKKYAVICAHGNRSA   69 (108)
T ss_dssp             CCEECHHHHHHTTTT-CEEEECSCHHHHTTCBCTTCEECCH------------HHHHHHGGGSCTTSCEEEECSSSHHHH
T ss_pred             ccEeCHHHHHHHHcC-CEEEECCCHHHHhcCcCCCCEEcCH------------HHHHHHHHhCCCCCeEEEEcCCCcHHH
Confidence            357899999999888 9999999999999999999999999            45666777889999999 999999999


Q ss_pred             HHHHHHHHcCCCCeeEecccHHHHHhCCCCCCC
Q 030091          151 MAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       151 ~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      .+++.|++.|| +|++|+||+.+|.++|.|+++
T Consensus        70 ~aa~~L~~~G~-~v~~l~GG~~~W~~~~~~~~~  101 (108)
T 3gk5_A           70 AAVEFLSQLGL-NIVDVEGGIQSWIEEGYPVVL  101 (108)
T ss_dssp             HHHHHHHTTTC-CEEEETTHHHHHHHTTCCCBC
T ss_pred             HHHHHHHHcCC-CEEEEcCcHHHHHHcCCCCCC
Confidence            99999999999 999999999999999999864

>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}

Probab=99.94  E-value=1.9e-27  Score=162.49  Aligned_cols=96  Identities=24%  Similarity=0.383  Sum_probs=85.7

Q ss_pred             ccccHHHHHHHHh--CCCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChHH
Q 030091           73 TSVPVRVAHELLQ--AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRS  149 (183)
Q Consensus        73 ~~i~~~~~~~~~~--~~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~s  149 (183)
                      +.|+++++.++++  ++++|||||++.||..||||||+|+|+.            .+......++++++|| ||.+|.||
T Consensus         2 ~~is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~------------~l~~~~~~l~~~~~ivvyC~~g~rs   69 (100)
T 3foj_A            2 ESITVTELKEKILDANPVNIVDVRTDQETAMGIIPGAETIPMN------------SIPDNLNYFNDNETYYIICKAGGRS   69 (100)
T ss_dssp             CEECHHHHHHGGGSSSCCEEEECSCHHHHTTCBCTTCEECCGG------------GGGGCGGGSCTTSEEEEECSSSHHH
T ss_pred             CccCHHHHHHHHhcCCCcEEEECCCHHHHhcCcCCCCEECCHH------------HHHHHHHhCCCCCcEEEEcCCCchH
Confidence            4688999999884  3499999999999999999999999994            3334456688999999 99999999


Q ss_pred             HHHHHHHHHcCCCCeeEecccHHHHHhCCCCC
Q 030091          150 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPT  181 (183)
Q Consensus       150 ~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv  181 (183)
                      ..+++.|++.|| +|++|+||+.+|.++|+|+
T Consensus        70 ~~a~~~L~~~G~-~v~~l~GG~~~W~~~g~pv  100 (100)
T 3foj_A           70 AQVVQYLEQNGV-NAVNVEGGMDEFGDEGLEH  100 (100)
T ss_dssp             HHHHHHHHTTTC-EEEEETTHHHHHCSSSCBC
T ss_pred             HHHHHHHHHCCC-CEEEecccHHHHHHcCCCC
Confidence            999999999999 8999999999999999986

>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A

Probab=99.94  E-value=1.8e-26  Score=159.60  Aligned_cols=98  Identities=30%  Similarity=0.494  Sum_probs=87.9

Q ss_pred             CccccHHHHHHHHhC-CCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChHH
Q 030091           72 PTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRS  149 (183)
Q Consensus        72 ~~~i~~~~~~~~~~~-~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~s  149 (183)
                      ...|+++++.+++++ +++|||||++.||..||||||+|+|+            ..+......++++++|| ||.+|.+|
T Consensus         4 ~~~i~~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~------------~~l~~~~~~l~~~~~ivvyc~~g~rs   71 (108)
T 1gmx_A            4 FECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTN------------DTLGAFMRDNDFDTPVMVMCYHGNSS   71 (108)
T ss_dssp             CEEECHHHHHHHHHTTCCEEEECSCHHHHHHCEETTCEECCH------------HHHHHHHHHSCTTSCEEEECSSSSHH
T ss_pred             ccccCHHHHHHHHhCCCCEEEEcCCHHHHHhCCCccCEeCCH------------HHHHHHHHhcCCCCCEEEEcCCCchH
Confidence            356899999998876 48999999999999999999999999            34455556689999999 99999999


Q ss_pred             HHHHHHHHHcCCCCeeEecccHHHHHhCCCCCC
Q 030091          150 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       150 ~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~  182 (183)
                      ..+++.|++.||+||++|+||+.+|.++ +|++
T Consensus        72 ~~a~~~L~~~G~~~v~~l~GG~~~W~~~-~p~~  103 (108)
T 1gmx_A           72 KGAAQYLLQQGYDVVYSIDGGFEAWQRQ-FPAE  103 (108)
T ss_dssp             HHHHHHHHHHTCSSEEEETTHHHHHHHH-CGGG
T ss_pred             HHHHHHHHHcCCceEEEecCCHHHHHHh-CCcc
Confidence            9999999999999999999999999998 8875

>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A

Probab=99.93  E-value=1.6e-26  Score=159.55  Aligned_cols=93  Identities=31%  Similarity=0.547  Sum_probs=77.5

Q ss_pred             HHHHHHh---CCCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChHHHHHHH
Q 030091           79 VAHELLQ---AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSMMAAT  154 (183)
Q Consensus        79 ~~~~~~~---~~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~s~~aa~  154 (183)
                      +++++++   .+++|||||++.||..||||||+|||+.           ++.......++++++|| ||.+|.+|..+++
T Consensus         2 el~~~l~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~-----------~l~~~~~~~l~~~~~ivvyc~~g~rs~~a~~   70 (106)
T 3hix_A            2 VLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIE-----------DLVDRASSSLEKSRDIYVYGAGDEQTSQAVN   70 (106)
T ss_dssp             -----------CCEEEECSCHHHHHTCEETTCEECCGG-----------GHHHHHHHHSCTTSCEEEECSSHHHHHHHHH
T ss_pred             hHHHHHHcCCCCeEEEECCCHHHHhcCcCCCCEeCCHH-----------HHHHHHHhcCCCCCeEEEEECCCChHHHHHH
Confidence            4555665   2489999999999999999999999995           44444556788999999 9999999999999


Q ss_pred             HHHHcCCCCeeEecccHHHHHhCCCCCC
Q 030091          155 DLLNAGFAGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       155 ~L~~~G~~~v~~l~GG~~~W~~~g~pv~  182 (183)
                      .|+..||+||++|+||+.+|.++|+|++
T Consensus        71 ~L~~~G~~~v~~l~GG~~~W~~~g~~~~   98 (106)
T 3hix_A           71 LLRSAGFEHVSELKGGLAAWKAIGGPTE   98 (106)
T ss_dssp             HHHHTTCSCEEECTTHHHHHHHTTCCEE
T ss_pred             HHHHcCCcCEEEecCCHHHHHHCCCCCC
Confidence            9999999999999999999999999975

>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}

Probab=99.93  E-value=8e-26  Score=162.97  Aligned_cols=113  Identities=23%  Similarity=0.302  Sum_probs=94.5

Q ss_pred             CCCccccHHHHHHHHh---CCCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhh--cCCCCCeEE-Ee
Q 030091           70 GVPTSVPVRVAHELLQ---AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST--RFRKHDEII-GC  143 (183)
Q Consensus        70 ~~~~~i~~~~~~~~~~---~~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~--~i~~~~~iv-~C  143 (183)
                      .....|+++++.++++   ++++|||||++.||..||||||+|+|+..+. .....+.+.+...+.  .++++++|| ||
T Consensus        20 ~~~~~is~~el~~~l~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~ivvyC   98 (139)
T 3d1p_A           20 SNIQSYSFEDMKRIVGKHDPNVVLVDVREPSEYSIVHIPASINVPYRSHP-DAFALDPLEFEKQIGIPKPDSAKELIFYC   98 (139)
T ss_dssp             CCCEECCHHHHHHHHHHTCTTEEEEECSCHHHHHHCCCTTCEECCTTTCT-TGGGSCHHHHHHHHSSCCCCTTSEEEEEC
T ss_pred             CCcceecHHHHHHHHhCCCCCeEEEECcCHHHHhCCCCCCcEEcCHHHhh-hhccCCHHHHHHHHhccCCCCCCeEEEEC
Confidence            4556799999999986   3589999999999999999999999996442 223344455555544  367889999 99


Q ss_pred             CCChHHHHHHHHHHHcCCCCeeEecccHHHHHhCCCCCCC
Q 030091          144 QSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       144 ~~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      .+|.||..++..|++.||++|++|+||+.+|.++|+|+..
T Consensus        99 ~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  138 (139)
T 3d1p_A           99 ASGKRGGEAQKVASSHGYSNTSLYPGSMNDWVSHGGDKLD  138 (139)
T ss_dssp             SSSHHHHHHHHHHHTTTCCSEEECTTHHHHHHHTTGGGCC
T ss_pred             CCCchHHHHHHHHHHcCCCCeEEeCCcHHHHHHcCCCCCC
Confidence            9999999999999999999999999999999999999863

>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A

Probab=99.93  E-value=5.4e-26  Score=164.59  Aligned_cols=97  Identities=30%  Similarity=0.508  Sum_probs=86.8

Q ss_pred             ccHHHHHHHHhC---CCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChHHH
Q 030091           75 VPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSM  150 (183)
Q Consensus        75 i~~~~~~~~~~~---~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~s~  150 (183)
                      |+++++.++++.   +++|||||++.||..||||||+|||+.           ++.......++++++|| ||.+|.+|.
T Consensus         2 Is~~el~~~l~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~-----------~l~~~~~~~l~~~~~ivvyC~~g~rs~   70 (141)
T 3ilm_A            2 SDAHVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIE-----------DLVDRASSSLEKSRDIYVYGAGDEQTS   70 (141)
T ss_dssp             CCHHHHHHHHHHSCSCEEEEECSCHHHHHHCEETTCEECCGG-----------GHHHHHHTTSCTTSEEEEECSSHHHHH
T ss_pred             CCHHHHHHHHhcCCCCEEEEECCCHHHHhCCCCCCCEEcCHH-----------HHHHHHHhcCCCCCeEEEEECCChHHH
Confidence            678899998873   389999999999999999999999994           44444446788999999 999999999


Q ss_pred             HHHHHHHHcCCCCeeEecccHHHHHhCCCCCC
Q 030091          151 MAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       151 ~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~  182 (183)
                      .+++.|+..||++|++|+||+.+|.++|+|++
T Consensus        71 ~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~  102 (141)
T 3ilm_A           71 QAVNLLRSAGFEHVSELKGGLAAWKAIGGPTE  102 (141)
T ss_dssp             HHHHHHHHTTCCSEEECTTHHHHHHHTTCCEE
T ss_pred             HHHHHHHHcCCCCEEEecCHHHHHHHCCCCcc
Confidence            99999999999999999999999999999985

>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}

Probab=99.93  E-value=2.1e-25  Score=160.65  Aligned_cols=103  Identities=26%  Similarity=0.438  Sum_probs=87.3

Q ss_pred             CCCccccHHHHHHHHh--C-CCEEEEcCCHHhHhc-CCCCCcEEeccccccCCCCCCCHHHHHHH-------hhcCCCCC
Q 030091           70 GVPTSVPVRVAHELLQ--A-GHRYLDVRTPEEFSA-GHATGAINVPYMYRVGSGMTKNLKFVEEV-------STRFRKHD  138 (183)
Q Consensus        70 ~~~~~i~~~~~~~~~~--~-~~~lIDvR~~~e~~~-ghIpgAi~ip~~~~~~~~~~~~~~~~~~~-------~~~i~~~~  138 (183)
                      .....|+++++.++++  + +++|||||++.||.. ||||||+|||+..+           ....       ...+++++
T Consensus        19 ~~~~~is~~~l~~~l~~~~~~~~liDvR~~~e~~~~ghIpgA~~ip~~~l-----------~~~~~~~~~~~~~~~~~~~   87 (139)
T 2hhg_A           19 SSIETLTTADAIALHKSGASDVVIVDIRDPREIERDGKIPGSFSCTRGML-----------EFWIDPQSPYAKPIFQEDK   87 (139)
T ss_dssp             TTSEEECHHHHHHHHHTTCTTEEEEECSCHHHHHHHCCCTTCEECCGGGH-----------HHHHCTTSTTCCGGGGSSS
T ss_pred             HhcCccCHHHHHHHHhccCCCeEEEECCCHHHHHhCCCCCCeEECChHHH-----------HHhcCccchhhhccCCCCC
Confidence            3456799999999987  3 489999999999999 99999999999521           1111       12357889


Q ss_pred             eEE-EeCCChHHHHHHHHHHHcCCCCeeEecccHHHHHhCCCCCCC
Q 030091          139 EII-GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       139 ~iv-~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      +|| ||.+|.||..+++.|+..||+||++|+||+.+|.++|+|++.
T Consensus        88 ~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  133 (139)
T 2hhg_A           88 KFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFGAWRDAGGPIEA  133 (139)
T ss_dssp             EEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHHHHHHTTCCCC-
T ss_pred             eEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHHHHHHCCCCeec
Confidence            999 999999999999999999999999999999999999999863

>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3

Probab=99.92  E-value=1.6e-25  Score=161.37  Aligned_cols=102  Identities=24%  Similarity=0.378  Sum_probs=88.5

Q ss_pred             CCccccHHHHHHHHh-C-CCEEEEcCCHHhHhc-CC--CCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeC
Q 030091           71 VPTSVPVRVAHELLQ-A-GHRYLDVRTPEEFSA-GH--ATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQ  144 (183)
Q Consensus        71 ~~~~i~~~~~~~~~~-~-~~~lIDvR~~~e~~~-gh--IpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~  144 (183)
                      ....|+++++.++++ + +++|||||++.||.. ||  ||||+|||+..+.        +  ......++++++|| ||.
T Consensus        21 ~~~~is~~el~~~l~~~~~~~liDVR~~~E~~~~gh~~IpgAinip~~~l~--------~--~~~~~~l~~~~~ivvyC~   90 (137)
T 1qxn_A           21 DMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLE--------P--LLAKSGLDPEKPVVVFCK   90 (137)
T ss_dssp             SSEEECHHHHHHHHHHCTTSEEEECCCHHHHHHTCEECCSSEEECCTTTSH--------H--HHHHHCCCTTSCEEEECC
T ss_pred             cCcccCHHHHHHHHhcCCCeEEEECCCHHHHHhcCCcCCCCCEEcchHHhh--------h--HHhhccCCCCCeEEEEcC
Confidence            345799999999987 4 499999999999999 99  9999999995211        1  11345688999999 999


Q ss_pred             CChHHHHHHHHHHHcCCCCeeEecccHHHHHhCCCCCC
Q 030091          145 SGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       145 ~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~  182 (183)
                      +|.||..+++.|++.||+||++|+||+.+|.++|+|++
T Consensus        91 ~G~rS~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~  128 (137)
T 1qxn_A           91 TAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSL  128 (137)
T ss_dssp             SSSCHHHHHHHHHHHTCSCEEEESSCHHHHHHTTCCEE
T ss_pred             CCcHHHHHHHHHHHcCCcceEEEcCcHHHHHHCCCCcc
Confidence            99999999999999999999999999999999999986

>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=99.92  E-value=8.3e-26  Score=152.58  Aligned_cols=92  Identities=24%  Similarity=0.297  Sum_probs=75.9

Q ss_pred             ccccHHHHHHHHhCCCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChHHHH
Q 030091           73 TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSMM  151 (183)
Q Consensus        73 ~~i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~s~~  151 (183)
                      +.|+++++.++++++++|||||++.||..||||||+|+|+.            .+......+++ ++|| ||.+|.||..
T Consensus         2 ~~is~~~l~~~~~~~~~liDvR~~~e~~~ghi~gAi~ip~~------------~l~~~~~~l~~-~~ivvyC~~g~rs~~   68 (94)
T 1wv9_A            2 RKVRPEELPALLEEGVLVVDVRPADRRSTPLPFAAEWVPLE------------KIQKGEHGLPR-RPLLLVCEKGLLSQV   68 (94)
T ss_dssp             CEECGGGHHHHHHTTCEEEECCCC--CCSCCSSCCEECCHH------------HHTTTCCCCCS-SCEEEECSSSHHHHH
T ss_pred             CcCCHHHHHHHHHCCCEEEECCCHHHHhcccCCCCEECCHH------------HHHHHHHhCCC-CCEEEEcCCCChHHH
Confidence            35788888888887899999999999999999999999994            33334455778 8999 9999999999


Q ss_pred             HHHHHHHcCCCCeeEecccHHHHHhCC
Q 030091          152 AATDLLNAGFAGITDIAGGFAAWRQNG  178 (183)
Q Consensus       152 aa~~L~~~G~~~v~~l~GG~~~W~~~g  178 (183)
                      +++.|++.||+ |++|+||+.+|.++|
T Consensus        69 a~~~L~~~G~~-v~~l~GG~~~W~~~G   94 (94)
T 1wv9_A           69 AALYLEAEGYE-AMSLEGGLQALTQGK   94 (94)
T ss_dssp             HHHHHHHHTCC-EEEETTGGGCC----
T ss_pred             HHHHHHHcCCc-EEEEcccHHHHHhCc
Confidence            99999999999 999999999998765

>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A

Probab=99.91  E-value=5.1e-25  Score=156.01  Aligned_cols=97  Identities=24%  Similarity=0.286  Sum_probs=87.3

Q ss_pred             ccccHHHHHHHHhC---CCEEEEcCCHHhH-hcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCCh
Q 030091           73 TSVPVRVAHELLQA---GHRYLDVRTPEEF-SAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGK  147 (183)
Q Consensus        73 ~~i~~~~~~~~~~~---~~~lIDvR~~~e~-~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~  147 (183)
                      ..|+++++.+++++   +++|||||++.|| ..||||||+|||+            +.+......++++++|| ||.+|.
T Consensus        15 ~~is~~el~~~l~~~~~~~~liDvR~~~e~~~~ghIpgA~nip~------------~~l~~~~~~l~~~~~ivvyC~~g~   82 (124)
T 3flh_A           15 LYIDHHTVLADMQNATGKYVVLDVRNAPAQVKKDQIKGAIAMPA------------KDLATRIGELDPAKTYVVYDWTGG   82 (124)
T ss_dssp             TEECHHHHHHHHHHTCCCEEEEECCCSCHHHHCCEETTCEECCH------------HHHHHHGGGSCTTSEEEEECSSSS
T ss_pred             ceecHHHHHHHHHcCCCCEEEEECCCHHHHHhcCcCCCCEECCH------------HHHHHHHhcCCCCCeEEEEeCCCC
Confidence            46899999988864   2899999999998 9999999999999            45666777899999999 999999


Q ss_pred             H--HHHHHHHHHHcCCCCeeEecccHHHHHhCCCCCC
Q 030091          148 R--SMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       148 ~--s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~  182 (183)
                      +  |..+++.|++.||+ |++|+||+.+|..+|+|+.
T Consensus        83 r~~s~~a~~~L~~~G~~-v~~l~GG~~~W~~~~~p~~  118 (124)
T 3flh_A           83 TTLGKTALLVLLSAGFE-AYELAGALEGWKGMQLPLE  118 (124)
T ss_dssp             CSHHHHHHHHHHHHTCE-EEEETTHHHHHHHTTCCEE
T ss_pred             chHHHHHHHHHHHcCCe-EEEeCCcHHHHHHcCCCCC
Confidence            8  89999999999997 9999999999999999875

>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A

Probab=99.91  E-value=5.2e-25  Score=159.95  Aligned_cols=99  Identities=24%  Similarity=0.370  Sum_probs=85.5

Q ss_pred             ccccHHHHHHHHhCC---CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCC--
Q 030091           73 TSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSG--  146 (183)
Q Consensus        73 ~~i~~~~~~~~~~~~---~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g--  146 (183)
                      ..|+++++.+++.++   ++|||||++.||..||||||+|||+..+.           ......++++++|| ||.+|  
T Consensus        16 ~~is~~el~~~l~~~~~~~~liDvR~~~ey~~ghIpgAinip~~~l~-----------~~~~~~l~~~~~ivvyC~~g~~   84 (144)
T 3nhv_A           16 YETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKIN-----------EDTTKRLSKEKVIITYCWGPAC   84 (144)
T ss_dssp             TEEEHHHHHHHHHTTCCSEEEEECSCHHHHHHCBCTTCEECCGGGCS-----------TTTTTTCCTTSEEEEECSCTTC
T ss_pred             cccCHHHHHHHHHcCCCCEEEEECcCHHHHhcCCCCCCEECCHHHHh-----------HHHHhhCCCCCeEEEEECCCCc
Confidence            357999999988754   89999999999999999999999995221           12345678899999 99998  


Q ss_pred             hHHHHHHHHHHHcCCCCeeEecccHHHHHhCCCCCCC
Q 030091          147 KRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       147 ~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      .+|..+++.|+..|| +|++|+||+.+|.++|+|++.
T Consensus        85 ~rs~~aa~~L~~~G~-~v~~l~GG~~~W~~~g~pv~~  120 (144)
T 3nhv_A           85 NGATKAAAKFAQLGF-RVKELIGGIEYWRKENGEVEG  120 (144)
T ss_dssp             CHHHHHHHHHHHTTC-EEEEEESHHHHHHHTTCCCBS
T ss_pred             cHHHHHHHHHHHCCC-eEEEeCCcHHHHHHCCCCccC
Confidence            799999999999999 599999999999999999863

>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2

Probab=99.91  E-value=3.3e-24  Score=171.07  Aligned_cols=139  Identities=20%  Similarity=0.321  Sum_probs=102.2

Q ss_pred             ceEEecCCccccccCcccCCcccc----------CCCCccccHHHHHHHHh-CCCEEEEcCCHHhH-----------hcC
Q 030091           45 NIGFISSKILSFCPKASLRGNLEA----------VGVPTSVPVRVAHELLQ-AGHRYLDVRTPEEF-----------SAG  102 (183)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~i~~~~~~~~~~-~~~~lIDvR~~~e~-----------~~g  102 (183)
                      -+..++||+..|............          ......++++++.++++ .+++|||||++.||           ..|
T Consensus       114 ~v~~l~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~~~~~liDvR~~~e~~G~~~~~~~~~~~g  193 (280)
T 1urh_A          114 KVSILGGGLAGWQRDDLLLEEGAVELPEGEFNAAFNPEAVVKVTDVLLASHENTAQIIDARPAARFNAEVDEPRPGLRRG  193 (280)
T ss_dssp             CEEEETTHHHHHHHTTCCCBBSCCCCCCCCCCCCCCGGGBCCHHHHHHHHHHTCSEEEECSCHHHHSSCCCC----CCSS
T ss_pred             CEEEecCCHHHHHHCCCcccCCCCCCCCCccccccCcccEEcHHHHHHHhcCCCcEEEeCCchhhcccccCCCCCCCcCc
Confidence            357899999999763322221111          01123489999988886 45899999999999           689


Q ss_pred             CCCCcEEeccccccCCCCCCCHHHHHHHhh--cCCCCCeEE-EeCCChHHHHHHHHHHHcCCCCeeEecccHHHHHh-CC
Q 030091          103 HATGAINVPYMYRVGSGMTKNLKFVEEVST--RFRKHDEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ-NG  178 (183)
Q Consensus       103 hIpgAi~ip~~~~~~~~~~~~~~~~~~~~~--~i~~~~~iv-~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~-~g  178 (183)
                      |||||+|||+..+...+.+.+.+.+...+.  .++++++|| ||.+|.||..++..|+.+||+||++|+|||.+|.+ .+
T Consensus       194 hIpgA~nip~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~W~~~~~  273 (280)
T 1urh_A          194 HIPGALNVPWTELVREGELKTTDELDAIFFGRGVSYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEWGARAD  273 (280)
T ss_dssp             SCTTCEECCGGGGBSSSSBCCHHHHHHHHHTTTCCSSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC------
T ss_pred             cCCCceEeeHHHhhcCCccCCHHHHHHHHHHcCCCCCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHHHhcCCC
Confidence            999999999976655555666777776665  468889999 99999999999999999999999999999999987 59


Q ss_pred             CCCCC
Q 030091          179 LPTEP  183 (183)
Q Consensus       179 ~pv~~  183 (183)
                      +|+++
T Consensus       274 ~Pv~~  278 (280)
T 1urh_A          274 LPVEP  278 (280)
T ss_dssp             -----
T ss_pred             CCcee
Confidence            99874

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X

Probab=99.91  E-value=5.1e-24  Score=169.13  Aligned_cols=137  Identities=17%  Similarity=0.288  Sum_probs=105.9

Q ss_pred             eEEecCCccccccCcccCCcccc----------CCCCccccHHHHHHHHhCC-CEEEEcCCHHhHh--------cCCCCC
Q 030091           46 IGFISSKILSFCPKASLRGNLEA----------VGVPTSVPVRVAHELLQAG-HRYLDVRTPEEFS--------AGHATG  106 (183)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~--------~ghIpg  106 (183)
                      +..++||+..|............          ......++++++.++++++ ++|||||++.||.        .|||||
T Consensus       110 v~~L~GG~~~w~~~g~p~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~g~~~~~~~~ghIpg  189 (271)
T 1e0c_A          110 YHYLNGGLTAWLAEDRPLSRELPAPAGGPVALSLHDEPTASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPG  189 (271)
T ss_dssp             EEEETTHHHHHHHTTCCCBCCCCCCCCSCCCCCCCSTTBCCHHHHHHHTTCTTEEEEECSCHHHHTTSSCCSSSCSBCTT
T ss_pred             eEEecCCHHHHHHcCCCccCCCCCCCCCCccccCCccccccHHHHHHHhcCCCcEEEEcCChhhcCCccCCCCcCCcCCC
Confidence            45899999999753322111111          1112357899999888754 8999999999999        999999


Q ss_pred             cEEeccccccCC--CCCCCHHHHHHHhh--cCCCCCeEE-EeCCChHHHHHHHHHHHcCCCCeeEecccHHHHHhC-CCC
Q 030091          107 AINVPYMYRVGS--GMTKNLKFVEEVST--RFRKHDEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQN-GLP  180 (183)
Q Consensus       107 Ai~ip~~~~~~~--~~~~~~~~~~~~~~--~i~~~~~iv-~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~-g~p  180 (183)
                      |+|+|+..+...  .+... +.+...+.  .++++++|| ||.+|.||..++..|+..||++|++|+||+.+|.++ |+|
T Consensus       190 A~~ip~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~~~~p  268 (271)
T 1e0c_A          190 AVNFEWTAAMDPSRALRIR-TDIAGRLEELGITPDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWGEWGNHPDTP  268 (271)
T ss_dssp             CEECCGGGGEEGGGTTEEC-TTHHHHHHHTTCCTTSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHHHHHTTCTTCC
T ss_pred             ceeccHHHhCCCCCCCCCH-HHHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcHHHHhcCCCCC
Confidence            999999654421  22223 44555555  578999999 999999999999999999999999999999999998 999


Q ss_pred             CCC
Q 030091          181 TEP  183 (183)
Q Consensus       181 v~~  183 (183)
                      +++
T Consensus       269 v~~  271 (271)
T 1e0c_A          269 VEL  271 (271)
T ss_dssp             CBC
T ss_pred             CcC
Confidence            974

>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A

Probab=99.90  E-value=1e-23  Score=169.61  Aligned_cols=137  Identities=15%  Similarity=0.241  Sum_probs=108.2

Q ss_pred             eEEecCCccccccCcccCCccccC----------CCCccccHHHHHHHHh-CCCEEEEcCCHHhH------------hcC
Q 030091           46 IGFISSKILSFCPKASLRGNLEAV----------GVPTSVPVRVAHELLQ-AGHRYLDVRTPEEF------------SAG  102 (183)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~~~~~~~~~~-~~~~lIDvR~~~e~------------~~g  102 (183)
                      +..++||+..|.............          .....++.+++.++++ .+++|||||++.||            ..|
T Consensus       123 V~~L~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~~~~~liDvR~~~e~~G~~~~~~~~~~~~g  202 (296)
T 1rhs_A          123 VSVLNGGFRNWLKEGHPVTSEPSRPEPAIFKATLNRSLLKTYEQVLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSG  202 (296)
T ss_dssp             EEEETTHHHHHHHTTCCCBCSCCCCCCCCCCCCCCGGGEECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCSSSSSCCCC
T ss_pred             EEEcCCCHHHHHHcCCccccCCCCCCCCCcccCCCcceEEcHHHHHHHhcCCCceEEeCCchhhcccccCCcccCCCcCc
Confidence            568899999997633222111110          1124688999988876 45899999999999            789


Q ss_pred             CCCCcEEeccccccC-CCCCCCHHHHHHHhh--cCCCCCeEE-EeCCChHHHHHHHHHHHcCCCCeeEecccHHHHHh-C
Q 030091          103 HATGAINVPYMYRVG-SGMTKNLKFVEEVST--RFRKHDEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ-N  177 (183)
Q Consensus       103 hIpgAi~ip~~~~~~-~~~~~~~~~~~~~~~--~i~~~~~iv-~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~-~  177 (183)
                      |||||+|||+..+.. .+.+.+.+.+...+.  .++++++|| ||.+|.||..++..|+.+||++|++|+|||.+|.. .
T Consensus       203 hIpgA~nip~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ivv~C~sG~rs~~a~~~L~~~G~~~v~~~~GG~~~W~~~~  282 (296)
T 1rhs_A          203 HIRGSVNMPFMNFLTEDGFEKSPEELRAMFEAKKVDLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRA  282 (296)
T ss_dssp             EETTCEECCGGGGBCTTSCBCCHHHHHHHHHHTTCCTTSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHHHHHHHS
T ss_pred             cCCCCEeecHHHhcCCCCcCCCHHHHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCcHHHHhcCC
Confidence            999999999976543 345566677776665  378899999 99999999999999999999999999999999988 7


Q ss_pred             CCCCC
Q 030091          178 GLPTE  182 (183)
Q Consensus       178 g~pv~  182 (183)
                      ++|++
T Consensus       283 ~~pv~  287 (296)
T 1rhs_A          283 PPETW  287 (296)
T ss_dssp             CGGGE
T ss_pred             CCCcc
Confidence            99885

>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}

Probab=99.90  E-value=2.3e-24  Score=149.54  Aligned_cols=86  Identities=19%  Similarity=0.336  Sum_probs=75.3

Q ss_pred             hCCCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhh--cCCCCCeEE-EeCCChHHHHHHHHHHHcCC
Q 030091           85 QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST--RFRKHDEII-GCQSGKRSMMAATDLLNAGF  161 (183)
Q Consensus        85 ~~~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~--~i~~~~~iv-~C~~g~~s~~aa~~L~~~G~  161 (183)
                      .++++|||||++.||..||||||+|+|+.           + +.....  .++++++|| ||.+|.||..+++.|+..||
T Consensus        14 ~~~~~liDvR~~~e~~~ghIpgAi~ip~~-----------~-l~~~~~~~~~~~~~~ivvyC~~G~rs~~aa~~L~~~G~   81 (110)
T 2k0z_A           14 FNDFIVVDVRELDEYEELHLPNATLISVN-----------D-QEKLADFLSQHKDKKVLLHCRAGRRALDAAKSMHELGY   81 (110)
T ss_dssp             GGGSEEEEEECHHHHHHSBCTTEEEEETT-----------C-HHHHHHHHHSCSSSCEEEECSSSHHHHHHHHHHHHTTC
T ss_pred             cCCeEEEECCCHHHHhcCcCCCCEEcCHH-----------H-HHHHHHhcccCCCCEEEEEeCCCchHHHHHHHHHHCCC
Confidence            34589999999999999999999999994           2 222232  378889999 99999999999999999999


Q ss_pred             CCeeEecccHHHHHhCCCCCCC
Q 030091          162 AGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       162 ~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      ++ ++|+||+.+|.++|+|+++
T Consensus        82 ~~-~~l~GG~~~W~~~g~p~~~  102 (110)
T 2k0z_A           82 TP-YYLEGNVYDFEKYGFRMVY  102 (110)
T ss_dssp             CC-EEEESCGGGTTTTTCCCBC
T ss_pred             CE-EEecCCHHHHHHCCCcEec
Confidence            99 9999999999999999863

>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A

Probab=99.90  E-value=2.6e-23  Score=169.04  Aligned_cols=137  Identities=20%  Similarity=0.299  Sum_probs=110.4

Q ss_pred             eEEecCCccccccCcccCCcccc------------CCCCccccHHHHHHHHhCCCEEEEcCCHHhHhc------------
Q 030091           46 IGFISSKILSFCPKASLRGNLEA------------VGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSA------------  101 (183)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~i~~~~~~~~~~~~~~lIDvR~~~e~~~------------  101 (183)
                      +..++||+..|...+........            ......++.+++.++++++ +|||||++.||..            
T Consensus       140 V~~L~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~i~~~el~~~l~~~-~liDvR~~~e~~~~~~~~~~~~~~~  218 (318)
T 3hzu_A          140 VRLLNGGRDLWLAERRETTLDVPTKTCTGYPVVQRNDAPIRAFRDDVLAILGAQ-PLIDVRSPEEYTGKRTHMPDYPEEG  218 (318)
T ss_dssp             EEEETTHHHHHHHTTCCCBCCCCCCCCCCCCCCCCCCTTTBCCHHHHHHHTTTS-CEEECSCHHHHHTSCSSCTTSCSCS
T ss_pred             eEEccCCHHHHhhcCCCcccCCCCCCCCccccccCCCccccccHHHHHHhhcCC-eEEecCCHHHhcccccCcccccccc
Confidence            57899999999864332221100            0112247889999998877 9999999999998            


Q ss_pred             ----CCCCCcEEecccccc-CCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChHHHHHHHHHHH-cCCCCeeEecccHHHH
Q 030091          102 ----GHATGAINVPYMYRV-GSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSMMAATDLLN-AGFAGITDIAGGFAAW  174 (183)
Q Consensus       102 ----ghIpgAi~ip~~~~~-~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~s~~aa~~L~~-~G~~~v~~l~GG~~~W  174 (183)
                          ||||||+|||+..+. ..+.+.+.+.+...+..++++++|| ||.+|.||..++..|.+ +||++|++|+|||.+|
T Consensus       219 ~~~~GhIpGA~niP~~~~~~~~g~~~~~~~l~~~~~~l~~~~~ivvyC~sG~rs~~a~~~L~~~~G~~~v~~~~GG~~~W  298 (318)
T 3hzu_A          219 ALRAGHIPTAVHIPWGKAADESGRFRSREELERLYDFINPDDQTVVYCRIGERSSHTWFVLTHLLGKADVRNYDGSWTEW  298 (318)
T ss_dssp             CSSCSBCTTCEECCGGGGBCTTSCBCCHHHHHHHTTTCCTTCCCEEECSSSHHHHHHHHHHHHTSCCSSCEECTTHHHHH
T ss_pred             CCcCcCCCCeeecCHHHhcCCCCcCCCHHHHHHHhcCCCCCCcEEEEcCChHHHHHHHHHHHHHcCCCCeeEeCCcHHHH
Confidence                999999999996554 3456677778888787889999999 99999999999999997 9999999999999999


Q ss_pred             Hh-CCCCCCC
Q 030091          175 RQ-NGLPTEP  183 (183)
Q Consensus       175 ~~-~g~pv~~  183 (183)
                      .. .|+|+++
T Consensus       299 ~~~~g~Pv~~  308 (318)
T 3hzu_A          299 GNAVRVPIVA  308 (318)
T ss_dssp             TTSTTCCCBC
T ss_pred             hcCCCCCccc
Confidence            95 6999874

>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2

Probab=99.90  E-value=2.6e-23  Score=166.19  Aligned_cols=138  Identities=20%  Similarity=0.314  Sum_probs=109.2

Q ss_pred             eEEecCCccccccCcccCCccc-----------cCCCCccccHHHHHHHHh----CCCEEEEcCCHHhHh----------
Q 030091           46 IGFISSKILSFCPKASLRGNLE-----------AVGVPTSVPVRVAHELLQ----AGHRYLDVRTPEEFS----------  100 (183)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~i~~~~~~~~~~----~~~~lIDvR~~~e~~----------  100 (183)
                      +..+.||+..|...........           .......|+++++.++++    .+..|||||++.||.          
T Consensus       108 v~~l~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~el~~~l~~~~~~~~~liDvR~~~e~~g~~~~~~~~~  187 (285)
T 1uar_A          108 VRLMNGGRQKWVEEGRPLTTEVPSYPPGRYEVPYRDESIRAYRDDVLEHIIKVKEGKGALVDVRSPQEYRGELTHMPDYP  187 (285)
T ss_dssp             EEEETTHHHHHHHHTCCCBCCCCCCCCCCCCCCCCCGGGEECHHHHHHHHHHHHTTSEEEEECSCHHHHHTCC-------
T ss_pred             eEEecCCHHHHHHCCCcccCCCCcccCCCcccccCCcceEEcHHHHHHHHhhcccCCCcEEEcCCccceeeecccccccc
Confidence            4588999999965322111100           011113489999999884    456899999999998          


Q ss_pred             ------cCCCCCcEEeccccccC-CCCCCCHHHHHHHhhc--CCCCCeEE-EeCCChHHHHHHHHHH-HcCCCCeeEecc
Q 030091          101 ------AGHATGAINVPYMYRVG-SGMTKNLKFVEEVSTR--FRKHDEII-GCQSGKRSMMAATDLL-NAGFAGITDIAG  169 (183)
Q Consensus       101 ------~ghIpgAi~ip~~~~~~-~~~~~~~~~~~~~~~~--i~~~~~iv-~C~~g~~s~~aa~~L~-~~G~~~v~~l~G  169 (183)
                            .||||||+|+|+..+.. .+.+.+.+.+...+..  ++++++|| ||.+|.||..+++.|+ .+||++|++|+|
T Consensus       188 ~~~~~~~ghIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~G  267 (285)
T 1uar_A          188 QEGALRAGHIPGAKNIPWAKAVNPDGTFKSAEELRALYEPLGITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDG  267 (285)
T ss_dssp             -CCCSCCSBCTTCEECCGGGGBCTTSCBCCHHHHHHHHGGGTCCTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESS
T ss_pred             ccccccCCcCCCccccCHHHhcCCCCcCCCHHHHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCc
Confidence                  89999999999965542 3556777888887776  88999999 9999999999999999 999999999999


Q ss_pred             cHHHHH-hCCCCCCC
Q 030091          170 GFAAWR-QNGLPTEP  183 (183)
Q Consensus       170 G~~~W~-~~g~pv~~  183 (183)
                      |+.+|. ..|+|+++
T Consensus       268 G~~~W~~~~g~pv~~  282 (285)
T 1uar_A          268 SWTEWGNLVGVPIAK  282 (285)
T ss_dssp             HHHHHTTSTTCCCBC
T ss_pred             hHHHHhcCCCCCccc
Confidence            999998 78999874

>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}

Probab=99.90  E-value=2.1e-23  Score=168.48  Aligned_cols=137  Identities=15%  Similarity=0.282  Sum_probs=108.8

Q ss_pred             ceEEecCCccccccCcccCCcccc----------CCCCccccHHHHHHHHh-CCCEEEEcCCHHhH-----------hcC
Q 030091           45 NIGFISSKILSFCPKASLRGNLEA----------VGVPTSVPVRVAHELLQ-AGHRYLDVRTPEEF-----------SAG  102 (183)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~i~~~~~~~~~~-~~~~lIDvR~~~e~-----------~~g  102 (183)
                      .+..++||+..|...+........          ......++.+++.+.++ .+++|||||+++||           ..|
T Consensus       137 ~V~~L~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~~~~~liDvR~~~ef~G~~~~p~~~~~~G  216 (302)
T 3olh_A          137 AVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEPG  216 (302)
T ss_dssp             CEEEETTHHHHHHHSCCC-CCSCCCCCCCCCCCCCCGGGEECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCSSTTCCCC
T ss_pred             cEEECCCCHHHHHHcCCCcccCCCCcCcCccccccCccceecHHHHHHhhcCCCcEEEecCCHHHccccccCCCcCCcCc
Confidence            367899999999863322211100          11123478889988876 45899999999999           789


Q ss_pred             CCCCcEEeccccccC-CCCCCCHHHHHHHhh--cCCCCCeEE-EeCCChHHHHHHHHHHHcCCCCeeEecccHHHHHhCC
Q 030091          103 HATGAINVPYMYRVG-SGMTKNLKFVEEVST--RFRKHDEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNG  178 (183)
Q Consensus       103 hIpgAi~ip~~~~~~-~~~~~~~~~~~~~~~--~i~~~~~iv-~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g  178 (183)
                      |||||+|||+..+.. .+.+.+.+.+...+.  .++++++|| ||.+|.||..++..|+.+||++|++|+|||.+|.+++
T Consensus       217 hIpGAiniP~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~iv~yC~sG~rs~~a~~~L~~~G~~~v~~~~Gg~~~W~~~~  296 (302)
T 3olh_A          217 HIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDLSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRA  296 (302)
T ss_dssp             CCTTCEECCGGGGBCSSSCBCCHHHHHHHHHHTTCCTTSCEEEECSSSSTTHHHHHHHHTTTCCCCCEESSHHHHHHHHH
T ss_pred             cCCCceecCHHHhcCCCCccCCHHHHHHHHHhcCCCCCCCEEEECCChHHHHHHHHHHHHcCCCCeeEeCCcHHHHhhcc
Confidence            999999999976653 456677777777766  478889999 9999999999999999999999999999999999998


Q ss_pred             CCC
Q 030091          179 LPT  181 (183)
Q Consensus       179 ~pv  181 (183)
                      +|.
T Consensus       297 ~P~  299 (302)
T 3olh_A          297 RPE  299 (302)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            875

>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}

Probab=99.89  E-value=1.5e-23  Score=152.69  Aligned_cols=108  Identities=28%  Similarity=0.428  Sum_probs=84.8

Q ss_pred             CccccHHHHHHHHh--CCCEEEEcCCHHhHhc-CCC------CCcEEeccccccCCCCCCCHHHHHHHhhc-----CCCC
Q 030091           72 PTSVPVRVAHELLQ--AGHRYLDVRTPEEFSA-GHA------TGAINVPYMYRVGSGMTKNLKFVEEVSTR-----FRKH  137 (183)
Q Consensus        72 ~~~i~~~~~~~~~~--~~~~lIDvR~~~e~~~-ghI------pgAi~ip~~~~~~~~~~~~~~~~~~~~~~-----i~~~  137 (183)
                      ...|+++++.++++  .+++|||||++.||.. |||      |||+|+|+.. ....  ..+.+...+.+.     ++++
T Consensus         4 ~~~is~~el~~~l~~~~~~~liDVR~~~e~~~~ghi~~~g~~pgAv~ip~~~-~~~~--~~~~~~~~l~~~l~~~~~~~~   80 (148)
T 2fsx_A            4 AGDITPLQAWEMLSDNPRAVLVDVRCEAEWRFVGVPDLSSLGREVVYVEWAT-SDGT--HNDNFLAELRDRIPADADQHE   80 (148)
T ss_dssp             SEEECHHHHHHHHHHCTTCEEEECSCHHHHHHTCEECCGGGTCCCEECCSBC-TTSC--BCTTHHHHHHHHCC-------
T ss_pred             cccCCHHHHHHHHhcCCCeEEEECCCHHHHHhcCCCccccCCCCcEEeeeec-cccc--cCHHHHHHHHHHHhhccCCCC
Confidence            34689999999887  3599999999999997 999      9999999964 2111  122333333332     4788


Q ss_pred             CeEE-EeCCChHHHHHHHHHHHcCCCCeeEecccH------------HHHHhCCCCCC
Q 030091          138 DEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGF------------AAWRQNGLPTE  182 (183)
Q Consensus       138 ~~iv-~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~------------~~W~~~g~pv~  182 (183)
                      ++|| ||.+|.||..+++.|+..||++|++|+||+            .+|.++|+|++
T Consensus        81 ~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~~w~~~~g~~~~~~W~~~glp~~  138 (148)
T 2fsx_A           81 RPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFEGHLDAEGHRGATGWRAVGLPWR  138 (148)
T ss_dssp             CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTTCCCCTTSCCCSSSTTTTTCSEE
T ss_pred             CEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChhhhhhhccccccccHHHcCCCCC
Confidence            9999 999999999999999999999999999999            68999999986

>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A

Probab=99.89  E-value=7.6e-23  Score=162.82  Aligned_cols=137  Identities=21%  Similarity=0.309  Sum_probs=105.6

Q ss_pred             eEEecCCccccccCcccCCccccC-----------CCCccccHHHHHHHHhCCCEEEEcCCHHhHhc-------------
Q 030091           46 IGFISSKILSFCPKASLRGNLEAV-----------GVPTSVPVRVAHELLQAGHRYLDVRTPEEFSA-------------  101 (183)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~i~~~~~~~~~~~~~~lIDvR~~~e~~~-------------  101 (183)
                      +..+.||+..|...+.........           .....++++++.+++.++. |||||++.||..             
T Consensus       106 v~~l~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~-liDvR~~~e~~~~~~~~~~~~~~~~  184 (277)
T 3aay_A          106 VKLLDGGRKKWELDGRPLSSDPVSRPVTSYTASPPDNTIRAFRDEVLAAINVKN-LIDVRSPDEFSGKILAPAHLPQEQS  184 (277)
T ss_dssp             EEEETTHHHHHHHTTCCCBCCCCCCCCCCCCCCCCCGGGEECHHHHHHTTTTSE-EEECSCHHHHHTSCCC-----CCCC
T ss_pred             EEEecCCHHHHHHcCCccccCCCCcCCCCccccCcccchhcCHHHHHHhcCCCC-EEEeCChHHeeeeeccccccccccc
Confidence            458899999997532221111110           0011267888888887655 999999999985             


Q ss_pred             ---CCCCCcEEecccccc-CCCCCCCHHHHHHHhh--cCCCCCeEE-EeCCChHHHHHHHHHHH-cCCCCeeEecccHHH
Q 030091          102 ---GHATGAINVPYMYRV-GSGMTKNLKFVEEVST--RFRKHDEII-GCQSGKRSMMAATDLLN-AGFAGITDIAGGFAA  173 (183)
Q Consensus       102 ---ghIpgAi~ip~~~~~-~~~~~~~~~~~~~~~~--~i~~~~~iv-~C~~g~~s~~aa~~L~~-~G~~~v~~l~GG~~~  173 (183)
                         ||||||+|+|+.... ..+.+.+.+.+...+.  .++++++|| ||.+|.||..+++.|++ +||++|++|+||+.+
T Consensus       185 ~~~ghIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~iv~yC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~~  264 (277)
T 3aay_A          185 QRPGHIPGAINVPWSRAANEDGTFKSDEELAKLYADAGLDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWTE  264 (277)
T ss_dssp             SCCSBCTTCEECCGGGGBCTTSCBCCHHHHHHHHHHHTCCTTSCEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHHH
T ss_pred             ccCCcCCCceecCHHHhcCCCCcCCCHHHHHHHHHHcCCCCCCCEEEEcCcHHHHHHHHHHHHHHcCCCcceeeCchHHH
Confidence               999999999996443 2355666777777665  378899999 99999999999999996 999999999999999


Q ss_pred             HHh-CCCCCCC
Q 030091          174 WRQ-NGLPTEP  183 (183)
Q Consensus       174 W~~-~g~pv~~  183 (183)
                      |.+ .|+|+++
T Consensus       265 W~~~~g~pv~~  275 (277)
T 3aay_A          265 YGSLVGAPIEL  275 (277)
T ss_dssp             HTTSTTCCCBC
T ss_pred             HhcCCCCCCcc
Confidence            998 8999874

>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1

Probab=99.89  E-value=7.4e-24  Score=155.15  Aligned_cols=106  Identities=19%  Similarity=0.282  Sum_probs=87.1

Q ss_pred             CCCccccHHHHHHHHhC-CCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeC-CC
Q 030091           70 GVPTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQ-SG  146 (183)
Q Consensus        70 ~~~~~i~~~~~~~~~~~-~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~-~g  146 (183)
                      .....|+++++.+++++ +++|||||++.||..||||||+|||+..+.        +.+..+...++++++|| ||. +|
T Consensus        25 ~~~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpgAinip~~~l~--------~~~~~l~~~~~~~~~iVvyC~~~G   96 (152)
T 1t3k_A           25 RSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFD--------DKISHLVQNVKDKDTLVFHSALSQ   96 (152)
T ss_dssp             SSSEEECTTTTTTCCCCTTEEEEEESCSHHHHSSCCCSSEEECCSSSS--------TTHHHHHHTCCSCCEEEESSSCCS
T ss_pred             CCCceECHHHHHHHhcCCCEEEEECCChhhccCccCCCCEECCHHHHH--------HHHHHHHHhcCCCCEEEEEcCCCC
Confidence            34457888888777763 589999999999999999999999995321        23455555678889999 999 99


Q ss_pred             hHHHHHHHHHH--------HcCCCCeeEecccHHHHHhCCCCCCC
Q 030091          147 KRSMMAATDLL--------NAGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       147 ~~s~~aa~~L~--------~~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      .++..++..|.        ..||++|++|+||+.+|.++|+|+++
T Consensus        97 ~rs~~aa~~L~~~l~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~  141 (152)
T 1t3k_A           97 VRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCR  141 (152)
T ss_dssp             SSHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTHHHHHHSCSSCC
T ss_pred             cchHHHHHHHHHHHHHHHHhcCCCcEEEEcCCHHHHHHcCCcccc
Confidence            99988888774        37999999999999999999999863

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X

Probab=99.89  E-value=1.1e-22  Score=161.40  Aligned_cols=112  Identities=18%  Similarity=0.161  Sum_probs=96.0

Q ss_pred             CccccHHHHHHHHhC-CCEEEEcCCHHhHhcCCCCCcEEeccccccC-----CCCCCCHHHHHHHhhc--CCCCCeEE-E
Q 030091           72 PTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--FRKHDEII-G  142 (183)
Q Consensus        72 ~~~i~~~~~~~~~~~-~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~-----~~~~~~~~~~~~~~~~--i~~~~~iv-~  142 (183)
                      ...|+++++.+++++ +++|||||++.||..||||||+|+|+..+..     .+++.+.+.+...+..  ++++++|| |
T Consensus         8 ~~~is~~~l~~~l~~~~~~iiDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~vvvy   87 (271)
T 1e0c_A            8 PLVIEPADLQARLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPREQLESLFGELGHRPEAVYVVY   87 (271)
T ss_dssp             CSEECHHHHHTTTTCTTEEEEECSCHHHHHHCBSTTCEECCGGGGSCCCTTCTTSCCCHHHHHHHHHHHTCCTTCEEEEE
T ss_pred             CceeeHHHHHHhccCCCeEEEEcCCcchhhhCcCCCCEECCHHHhccCCCCCCCCCCCHHHHHHHHHHcCCCCCCeEEEE
Confidence            347899999998864 5899999999999999999999999965432     2456667777776665  68899999 9


Q ss_pred             eCCCh-HHHHHHHHHHHcCCCCeeEecccHHHHHhCCCCCCC
Q 030091          143 CQSGK-RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       143 C~~g~-~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      |.+|. +|.++++.|+.+||++|++|+||+.+|..+|+|+++
T Consensus        88 c~~g~~~s~~a~~~L~~~G~~~v~~L~GG~~~w~~~g~p~~~  129 (271)
T 1e0c_A           88 DDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPLSR  129 (271)
T ss_dssp             CSSSSHHHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBC
T ss_pred             cCCCCccHHHHHHHHHHcCCCCeEEecCCHHHHHHcCCCccC
Confidence            99887 999999999999999999999999999999999863

>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}

Probab=99.88  E-value=5.1e-23  Score=146.68  Aligned_cols=103  Identities=24%  Similarity=0.376  Sum_probs=77.6

Q ss_pred             CccccHHHHHHHHhCCCEEEEcCCHHhHhcCCCCCcEEeccccccCCC---------------------CCCCHHHHHHH
Q 030091           72 PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSG---------------------MTKNLKFVEEV  130 (183)
Q Consensus        72 ~~~i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~---------------------~~~~~~~~~~~  130 (183)
                      ...|+++++.+  .++++|||||++.||..||||||+|+|+.......                     .......+...
T Consensus         4 ~~~i~~~el~~--~~~~~iiDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (134)
T 3g5j_A            4 MSVIKIEKALK--LDKVIFVDVRTEGEYEEDHILNAINMPLFKNNEHNEVGTIYKMQGKHEAIQKGFDYVSYKLKDIYLQ   81 (134)
T ss_dssp             -CEECHHHHTT--CTTEEEEECSCHHHHHHCCCTTCEECCSSCHHHHHHHHHHHHHHCHHHHHHHHHHHHGGGHHHHHHH
T ss_pred             ccccCHHHHHh--cCCcEEEEcCCHHHHhcCCCCCCEEcCccchhhhhcccceeeecChhHHHhcccccccccHHHHHHH
Confidence            34678888766  55699999999999999999999999994211000                     00000122233


Q ss_pred             hhcCCCC-CeEE-Ee-CCChHHHHHHHHHHHcCCCCeeEecccHHHHHhC
Q 030091          131 STRFRKH-DEII-GC-QSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQN  177 (183)
Q Consensus       131 ~~~i~~~-~~iv-~C-~~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~  177 (183)
                      ...++++ ++|| || .+|.||..+++.|+.+|| +|++|+||+.+|.+.
T Consensus        82 ~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~-~v~~l~GG~~~W~~~  130 (134)
T 3g5j_A           82 AAELALNYDNIVIYCARGGMRSGSIVNLLSSLGV-NVYQLEGGYKAYRNF  130 (134)
T ss_dssp             HHHHHTTCSEEEEECSSSSHHHHHHHHHHHHTTC-CCEEETTHHHHHHHH
T ss_pred             HHHhccCCCeEEEEECCCChHHHHHHHHHHHcCC-ceEEEeCcHHHHHHH
Confidence            3446777 8999 99 599999999999999999 999999999999874

>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}

Probab=99.88  E-value=5e-23  Score=145.63  Aligned_cols=104  Identities=24%  Similarity=0.274  Sum_probs=79.8

Q ss_pred             cccHHHHHHHHhCC--CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHh-------h--cCCCCCeEE-
Q 030091           74 SVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS-------T--RFRKHDEII-  141 (183)
Q Consensus        74 ~i~~~~~~~~~~~~--~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~-------~--~i~~~~~iv-  141 (183)
                      .|+++++.++++++  ++|||||++.||..||||||+|+|+..+...    .........       .  .++++++|| 
T Consensus         2 ~is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~ivv   77 (127)
T 3i2v_A            2 RVSVTDYKRLLDSGAFHLLLDVRPQVEVDICRLPHALHIPLKHLERR----DAESLKLLKEAIWEEKQGTQEGAAVPIYV   77 (127)
T ss_dssp             EECHHHHHHHHHHTCCCEEEECSCHHHHHHCCCTTSEECCHHHHHTT----CHHHHHHHHHHHHHHHTTC---CCEEEEE
T ss_pred             CCCHHHHHHHHhCCCCeEEEECCCHHHhhheecCCceeCChHHHhhh----hhhhHHHHHHHHhhhcccccCCCCCeEEE
Confidence            57899999988653  8999999999999999999999999532211    111111111       1  123455899 


Q ss_pred             EeCCChHHHHHHHHHHHc------CCCCeeEecccHHHHHhCCCCC
Q 030091          142 GCQSGKRSMMAATDLLNA------GFAGITDIAGGFAAWRQNGLPT  181 (183)
Q Consensus       142 ~C~~g~~s~~aa~~L~~~------G~~~v~~l~GG~~~W~~~g~pv  181 (183)
                      ||.+|.+|..+++.|++.      ||.+|++|+||+.+|.++..|.
T Consensus        78 ~C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~~W~~~~~~~  123 (127)
T 3i2v_A           78 ICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLMAWAAKIDGT  123 (127)
T ss_dssp             ECSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHHHHHHHTCTT
T ss_pred             EcCCCCcHHHHHHHHHHhhccccCCCceEEEecCCHHHHHHhcCCC
Confidence            999999999999999998      6889999999999999876664

>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A

Probab=99.87  E-value=4.4e-23  Score=136.58  Aligned_cols=76  Identities=30%  Similarity=0.539  Sum_probs=66.8

Q ss_pred             CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcC--CCCCeEE-EeCCChHHHHHHHHHHHcCCCCe
Q 030091           88 HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEII-GCQSGKRSMMAATDLLNAGFAGI  164 (183)
Q Consensus        88 ~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i--~~~~~iv-~C~~g~~s~~aa~~L~~~G~~~v  164 (183)
                      ++|||||++.||..||||||+|+|+.            .+...+..+  +++++|| ||.+|.+|..+++.|++.||++|
T Consensus         2 ~~liDvR~~~e~~~ghIpgA~~ip~~------------~l~~~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v   69 (85)
T 2jtq_A            2 EHWIDVRVPEQYQQEHVQGAINIPLK------------EVKERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHV   69 (85)
T ss_dssp             EEEEECSCHHHHTTEEETTCEECCHH------------HHHHHHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCSSE
T ss_pred             CEEEECCCHHHHHhCCCCCCEEcCHH------------HHHHHHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCCCE
Confidence            57999999999999999999999993            344444444  7889999 99999999999999999999999


Q ss_pred             eEecccHHHHHh
Q 030091          165 TDIAGGFAAWRQ  176 (183)
Q Consensus       165 ~~l~GG~~~W~~  176 (183)
                      +++ ||+.+|..
T Consensus        70 ~~l-GG~~~w~~   80 (85)
T 2jtq_A           70 ENA-GGLKDIAM   80 (85)
T ss_dssp             EEE-EETTTCCS
T ss_pred             Eec-cCHHHHhc
Confidence            999 99998853

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2

Probab=99.87  E-value=4.6e-22  Score=171.97  Aligned_cols=126  Identities=19%  Similarity=0.308  Sum_probs=105.8

Q ss_pred             eEEecC-CccccccCcccCCccccCCCCccccHHHHHHHHhC-CCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCC
Q 030091           46 IGFISS-KILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKN  123 (183)
Q Consensus        46 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~  123 (183)
                      +..++| |+..|..................++++++.+++++ +.+|||||++.||..||||||+|+|..          
T Consensus       349 v~~l~G~G~~~w~~~g~p~~~~~~~~~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgA~~ip~~----------  418 (539)
T 1yt8_A          349 VAVLDGLSEADFSERGAWSAPLPRQPRADTIDPTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVLRS----------  418 (539)
T ss_dssp             EEEECSCCGGGCCBCSSCCCCCCCCCCCCEECHHHHHHHTTSTTEEEEECSCHHHHHHCBCTTCEECCGG----------
T ss_pred             EEEecCCChHHHHHhhccccCCCCCCcCCccCHHHHHHHhcCCCeEEEEeCCHHHhhcCcCCCchhCCHH----------
Confidence            456889 99999864333333233445578999999999875 489999999999999999999999983          


Q ss_pred             HHHHHHHhhcCCCCCeEE-EeCCChHHHHHHHHHHHcCCCCeeEecccHHHHHhCCCCCCC
Q 030091          124 LKFVEEVSTRFRKHDEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       124 ~~~~~~~~~~i~~~~~iv-~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                        .+...+..++++++|| ||.+|.||..++..|+..||++|++|+||+.+|.++|+|+++
T Consensus       419 --~l~~~l~~l~~~~~ivv~C~sG~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  477 (539)
T 1yt8_A          419 --QLKQALERLGTAERYVLTCGSSLLARFAVAEVQALSGKPVFLLDGGTSAWVAAGLPTED  477 (539)
T ss_dssp             --GHHHHHHHHCCCSEEEEECSSSHHHHHHHHHHHHHHCSCEEEETTHHHHHHHTTCCCBC
T ss_pred             --HHHHHHHhCCCCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEeCCcHHHHHhCCCCccc
Confidence              4455556678899999 999999999999999999999999999999999999999863

>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2

Probab=99.87  E-value=3.2e-22  Score=159.48  Aligned_cols=110  Identities=18%  Similarity=0.192  Sum_probs=94.5

Q ss_pred             ccccHHHHHHHHhC-CCEEEEcC----------CHHhHhcCCCCCcEEeccccccC-----CCCCCCHHHHHHHhhc--C
Q 030091           73 TSVPVRVAHELLQA-GHRYLDVR----------TPEEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--F  134 (183)
Q Consensus        73 ~~i~~~~~~~~~~~-~~~lIDvR----------~~~e~~~ghIpgAi~ip~~~~~~-----~~~~~~~~~~~~~~~~--i  134 (183)
                      ..|+++++.+++++ +++|||||          ++.||..||||||+|+|+..+..     .+++.+.+.+...+..  +
T Consensus         4 ~~is~~~l~~~l~~~~~~iiDvR~~~~~~~~~~~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~gi   83 (280)
T 1urh_A            4 WFVGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDHTSPLPHMLPRPETFAVAMRELGV   83 (280)
T ss_dssp             CEECHHHHHTTTTCTTEEEEECCCCCSSCTTCCHHHHHHHSBCTTCEECCGGGGSCSSSSSSSCCCCHHHHHHHHHHTTC
T ss_pred             ceeeHHHHHHhcCCCCeEEEEeeccCCcccccchhhhhhhCcCCCCEECCHHHhcCCCCCCCCCCCCHHHHHHHHHHcCC
Confidence            46889999988874 58999999          78999999999999999965432     2456666777776665  5


Q ss_pred             CCCCeEE-EeCCChH-HHHHHHHHHHcCCCCeeEecccHHHHHhCCCCCC
Q 030091          135 RKHDEII-GCQSGKR-SMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       135 ~~~~~iv-~C~~g~~-s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~  182 (183)
                      +++++|| ||.+|.+ |..+++.|+.+||++|++|+||+.+|.++|+|++
T Consensus        84 ~~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~  133 (280)
T 1urh_A           84 NQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLAGWQRDDLLLE  133 (280)
T ss_dssp             CTTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHHHHHHHTTCCCB
T ss_pred             CCCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHHCCCccc
Confidence            7889999 9999988 9999999999999999999999999999999986

>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A

Probab=99.87  E-value=8.2e-23  Score=146.46  Aligned_cols=105  Identities=21%  Similarity=0.295  Sum_probs=85.1

Q ss_pred             CccccHHHHHHHHh-C-CCEEEEcCCHHhHhc-CCC------CCcEEeccccccCCCCCCCHHHHHHHhhcC--CCCCeE
Q 030091           72 PTSVPVRVAHELLQ-A-GHRYLDVRTPEEFSA-GHA------TGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEI  140 (183)
Q Consensus        72 ~~~i~~~~~~~~~~-~-~~~lIDvR~~~e~~~-ghI------pgAi~ip~~~~~~~~~~~~~~~~~~~~~~i--~~~~~i  140 (183)
                      ...|+++++.++++ + +++|||||++.||.. +|+      |||+|||+...      ....+...+...+  +++++|
T Consensus         4 ~~~is~~e~~~~l~~~~~~~liDVR~~~E~~~~~~~~~~g~~~ga~~ip~~~~------~~~~~~~~l~~~~~~~~~~~i   77 (134)
T 1vee_A            4 GSSGSAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGE------DKPGFLKKLSLKFKDPENTTL   77 (134)
T ss_dssp             SCBCCHHHHHHHHHHCTTEEEEECSCHHHHHHTCEECCTTTSCCCEECCCCGG------GHHHHHHHHHTTCSCGGGCEE
T ss_pred             CCccCHHHHHHHHHhCCCeEEEEcCCHHHHhhcCCCcccccCCceEEeecccc------cChhHHHHHHHHhCCCCCCEE
Confidence            34689999998886 3 589999999999985 333      79999998421      1223444444443  678999


Q ss_pred             E-EeCCChHHHHHHHHHHHcCCCCeeEecccH---HHHHhCCCCCC
Q 030091          141 I-GCQSGKRSMMAATDLLNAGFAGITDIAGGF---AAWRQNGLPTE  182 (183)
Q Consensus       141 v-~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~---~~W~~~g~pv~  182 (183)
                      | ||.+|.||..++..|+++||++|++|.||+   .+|.++|+|++
T Consensus        78 vv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~~~~~W~~~g~p~~  123 (134)
T 1vee_A           78 YILDKFDGNSELVAELVALNGFKSAYAIKDGAEGPRGWLNSSLPWI  123 (134)
T ss_dssp             EEECSSSTTHHHHHHHHHHHTCSEEEECTTTTTSTTSSGGGTCCEE
T ss_pred             EEEeCCCCcHHHHHHHHHHcCCcceEEecCCccCCcchhhcCCCCC
Confidence            9 999999999999999999999999999999   78999999986

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.87  E-value=3.2e-22  Score=170.33  Aligned_cols=120  Identities=24%  Similarity=0.423  Sum_probs=100.4

Q ss_pred             ceEEecCCccccccCcccCCccccCCCCccccHHHHHHHHhC-CCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCC
Q 030091           45 NIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKN  123 (183)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~  123 (183)
                      +..++. |+..|.....      .......++++++.+++++ +.+|||||++.||..||||||+|+|+           
T Consensus       353 v~~~l~-G~~~W~~~g~------~~~~~~~i~~~~l~~~~~~~~~~lvDvR~~~e~~~ghIpgA~~ip~-----------  414 (474)
T 3tp9_A          353 VVDWTD-PAAVDRAAPD------DVASYANVSPDEVRGALAQQGLWLLDVRNVDEWAGGHLPQAHHIPL-----------  414 (474)
T ss_dssp             EEEEEC-GGGGTTCCGG------GEECCEEECHHHHHHTTTTTCCEEEECSCHHHHHHCBCTTCEECCH-----------
T ss_pred             eEEecC-cHHHHHhccc------ccccccccCHHHHHHHhcCCCcEEEECCCHHHHhcCcCCCCEECCH-----------
Confidence            344455 8999985221      1223456899999988875 58999999999999999999999999           


Q ss_pred             HHHHHHHhhcCCCCCeEE-EeCCChHHHHHHHHHHHcCCCCeeEecccHHHHHhCCCCCCC
Q 030091          124 LKFVEEVSTRFRKHDEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       124 ~~~~~~~~~~i~~~~~iv-~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                       ..+......++++++|| ||.+|.||..++..|+..||++|++|+|||.+|.++|+|+++
T Consensus       415 -~~l~~~~~~l~~~~~vvv~C~~G~ra~~a~~~L~~~G~~~v~~~~Gg~~~W~~~g~p~~~  474 (474)
T 3tp9_A          415 -SKLAAHIHDVPRDGSVCVYCRTGGRSAIAASLLRAHGVGDVRNMVGGYEAWRGKGFPVEA  474 (474)
T ss_dssp             -HHHTTTGGGSCSSSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHHHHHHTTCCCBC
T ss_pred             -HHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEecChHHHHHhCCCCCCC
Confidence             34445566788999999 999999999999999999999999999999999999999974

>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A

Probab=99.87  E-value=3.3e-22  Score=162.55  Aligned_cols=112  Identities=16%  Similarity=0.178  Sum_probs=94.2

Q ss_pred             CccccHHHHHHHHhC-CCEEEEcCCHHh-HhcCCCCCcEEecccccc---CCCCCCCHHHHHHHhhc--CCCCCeEE-Ee
Q 030091           72 PTSVPVRVAHELLQA-GHRYLDVRTPEE-FSAGHATGAINVPYMYRV---GSGMTKNLKFVEEVSTR--FRKHDEII-GC  143 (183)
Q Consensus        72 ~~~i~~~~~~~~~~~-~~~lIDvR~~~e-~~~ghIpgAi~ip~~~~~---~~~~~~~~~~~~~~~~~--i~~~~~iv-~C  143 (183)
                      ...|+++++.+++++ +++|||||++.| |..||||||+|+|+....   ...++.+.+.+...+..  ++++++|| ||
T Consensus        39 ~~~is~~~l~~~l~~~~~~iiDvR~~~e~y~~gHIpGAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~lgi~~~~~vVvyc  118 (318)
T 3hzu_A           39 ERLVTADWLSAHMGAPGLAIVESDEDVLLYDVGHIPGAVKIDWHTDLNDPRVRDYINGEQFAELMDRKGIARDDTVVIYG  118 (318)
T ss_dssp             GGEECHHHHHHHTTCTTEEEEECCSSTTSGGGCBCTTEEECCHHHHHBCSSSSSBCCHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred             CceecHHHHHHhccCCCEEEEECCCChhHHhcCcCCCCeEeCchhhhccCcccCCCCHHHHHHHHHHcCCCCCCeEEEEC
Confidence            346999999999865 489999999876 999999999999974221   23455666677776665  78899999 99


Q ss_pred             CCCh-HHHHHHHHHHHcCCCCeeEecccHHHHHhCCCCCCC
Q 030091          144 QSGK-RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       144 ~~g~-~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      .+|. +|.++++.|+.+||++|++|+||+.+|.++|+|+++
T Consensus       119 ~~g~~~a~~a~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~  159 (318)
T 3hzu_A          119 DKSNWWAAYALWVFTLFGHADVRLLNGGRDLWLAERRETTL  159 (318)
T ss_dssp             SGGGHHHHHHHHHHHHTTCSCEEEETTHHHHHHHTTCCCBC
T ss_pred             CCCCccHHHHHHHHHHcCCCceEEccCCHHHHhhcCCCccc
Confidence            9887 899999999999999999999999999999999863

>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1

Probab=99.86  E-value=1.1e-21  Score=144.54  Aligned_cols=101  Identities=17%  Similarity=0.288  Sum_probs=83.0

Q ss_pred             CCCccccHHHHHHHHhC-------CCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhh---cC-CCCC
Q 030091           70 GVPTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST---RF-RKHD  138 (183)
Q Consensus        70 ~~~~~i~~~~~~~~~~~-------~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~---~i-~~~~  138 (183)
                      .....|+++++.+++++       +++|||||++.||..||||||+|||+.           +.......   .+ ++++
T Consensus        20 ~~~~~is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~-----------~~~~~~~~~~~~~~~~~~   88 (161)
T 1c25_A           20 QDLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHME-----------EEVEDFLLKKPIVPTDGK   88 (161)
T ss_dssp             TTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSH-----------HHHHHHTTTSCCCCCTTS
T ss_pred             CCcceeCHHHHHHHHhccccccCCCeEEEECCChHHccCCcccCcEeCChh-----------HHHHHHHhhhhhccCCCC
Confidence            34567999999999875       589999999999999999999999994           33333322   22 4677


Q ss_pred             eE--E-EeC-CChHHHHHHHHHHH----------cCCCCeeEecccHHHHHhCCCCC
Q 030091          139 EI--I-GCQ-SGKRSMMAATDLLN----------AGFAGITDIAGGFAAWRQNGLPT  181 (183)
Q Consensus       139 ~i--v-~C~-~g~~s~~aa~~L~~----------~G~~~v~~l~GG~~~W~~~g~pv  181 (183)
                      +|  | ||. +|.||..++..|++          +||++|++|+||+.+|.+++.|+
T Consensus        89 ~ivvv~yC~~sg~rs~~aa~~L~~~~~~~~~l~~~G~~~v~~l~GG~~~W~~~~~~~  145 (161)
T 1c25_A           89 RVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMKCQSY  145 (161)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHHHHHHHHGGG
T ss_pred             CeEEEEEcCCCCcchHHHHHHHHHHHHhhhhccccCCceEEEEcCCHHHHHHHcccc
Confidence            75  6 899 99999999999986          49999999999999999887765

>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A

Probab=99.86  E-value=2e-21  Score=149.38  Aligned_cols=101  Identities=18%  Similarity=0.234  Sum_probs=84.1

Q ss_pred             CCCccccHHHHHHHHhC-------CCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhh---cCC--CC
Q 030091           70 GVPTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST---RFR--KH  137 (183)
Q Consensus        70 ~~~~~i~~~~~~~~~~~-------~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~---~i~--~~  137 (183)
                      .....|+++++.+++++       +++|||||++.||..||||||+|||+.           +.......   .++  ++
T Consensus        41 ~~~~~Is~~el~~~l~~~~~~~~~~~~lIDvR~~~Ey~~gHIpGAinip~~-----------~l~~~~~~~~~~l~~~~d  109 (211)
T 1qb0_A           41 QDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLE-----------RDAESFLLKSPIAPCSLD  109 (211)
T ss_dssp             TTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSH-----------HHHHHHHHTTTCCCSSTT
T ss_pred             CCCCeeCHHHHHHHHhcccccCCCCEEEEECCCHHHHccCcCCCCEECCch-----------HHHHHhhhhhhhccccCC
Confidence            45578999999999875       489999999999999999999999994           33333222   344  67


Q ss_pred             CeE--E-EeC-CChHHHHHHHHHHH----------cCCCCeeEecccHHHHHhCCCCC
Q 030091          138 DEI--I-GCQ-SGKRSMMAATDLLN----------AGFAGITDIAGGFAAWRQNGLPT  181 (183)
Q Consensus       138 ~~i--v-~C~-~g~~s~~aa~~L~~----------~G~~~v~~l~GG~~~W~~~g~pv  181 (183)
                      ++|  | ||. +|.||..+++.|++          +||++|++|+||+.+|.+++.|+
T Consensus       110 ~~ivvVvyC~~sG~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~~W~~~g~~~  167 (211)
T 1qb0_A          110 KRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNF  167 (211)
T ss_dssp             SEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTCGGG
T ss_pred             CCeEEEEECCCCCccHHHHHHHHHhhhhhhhhhhhcCCCeEEEECCHHHHHHHHCccc
Confidence            776  7 899 99999999999986          69999999999999999988765

>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A

Probab=99.86  E-value=1.2e-21  Score=155.79  Aligned_cols=111  Identities=16%  Similarity=0.221  Sum_probs=92.2

Q ss_pred             ccccHHHHHHHHhC-CCEEEEcCC-HHhHhcCCCCCcEEeccccccC---CCCCCCHHHHHHHhhc--CCCCCeEE-EeC
Q 030091           73 TSVPVRVAHELLQA-GHRYLDVRT-PEEFSAGHATGAINVPYMYRVG---SGMTKNLKFVEEVSTR--FRKHDEII-GCQ  144 (183)
Q Consensus        73 ~~i~~~~~~~~~~~-~~~lIDvR~-~~e~~~ghIpgAi~ip~~~~~~---~~~~~~~~~~~~~~~~--i~~~~~iv-~C~  144 (183)
                      ..|+++++.+++++ +++|||||+ +.||..||||||+|+|+.....   .+++.+.+.+...+..  ++++++|| ||.
T Consensus         6 ~~is~~~l~~~l~~~~~~liDvR~~~~ey~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~vvvyc~   85 (277)
T 3aay_A            6 VLVSADWAESNLHAPKVVFVEVDEDTSAYDRDHIAGAIKLDWRTDLQDPVKRDFVDAQQFSKLLSERGIANEDTVILYGG   85 (277)
T ss_dssp             HEECHHHHHTTTTCTTEEEEEEESSSHHHHHCBSTTCEEEETTTTTBCSSSSSBCCHHHHHHHHHHHTCCTTSEEEEECS
T ss_pred             ceEcHHHHHHHhCCCCEEEEEcCCChhhHhhCCCCCcEEecccccccCCCCCCCCCHHHHHHHHHHcCCCCCCeEEEECC
Confidence            35888999888875 489999998 8999999999999999853321   2344556666666665  78899999 999


Q ss_pred             CCh-HHHHHHHHHHHcCCCCeeEecccHHHHHhCCCCCCC
Q 030091          145 SGK-RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       145 ~g~-~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      +|. +|..+++.|+.+||++|++|+||+.+|.++|+|+++
T Consensus        86 ~g~~~s~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  125 (277)
T 3aay_A           86 NNNWFAAYAYWYFKLYGHEKVKLLDGGRKKWELDGRPLSS  125 (277)
T ss_dssp             GGGHHHHHHHHHHHHTTCCSEEEETTHHHHHHHTTCCCBC
T ss_pred             CCCchHHHHHHHHHHcCCCcEEEecCCHHHHHHcCCcccc
Confidence            875 688999999999999999999999999999999863

>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A

Probab=99.86  E-value=2.2e-21  Score=144.78  Aligned_cols=101  Identities=17%  Similarity=0.197  Sum_probs=81.2

Q ss_pred             CCCccccHHHHHHHHhC-------CCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhh---cCC--CC
Q 030091           70 GVPTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST---RFR--KH  137 (183)
Q Consensus        70 ~~~~~i~~~~~~~~~~~-------~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~---~i~--~~  137 (183)
                      .....|+++++.+++++       +++|||||++.||..||||||+|||+.           +.......   .++  ++
T Consensus        21 ~~~~~is~~el~~~l~~~~~~~~~~~~liDvR~~~ey~~ghIpgAinip~~-----------~l~~~~~~~~~~~~~~~~   89 (175)
T 2a2k_A           21 QDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLE-----------RDAESFLLKSPIAPCSLD   89 (175)
T ss_dssp             TTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSH-----------HHHHHHHHSSCCCC----
T ss_pred             CCCceeCHHHHHHHHhcccccCCCCEEEEECCCHHHHcCCcCCCcEECChh-----------HHHHHhhhhhhhccccCC
Confidence            44568999999999875       489999999999999999999999994           33333222   133  67


Q ss_pred             CeE--E-EeC-CChHHHHHHHHHHH----------cCCCCeeEecccHHHHHhCCCCC
Q 030091          138 DEI--I-GCQ-SGKRSMMAATDLLN----------AGFAGITDIAGGFAAWRQNGLPT  181 (183)
Q Consensus       138 ~~i--v-~C~-~g~~s~~aa~~L~~----------~G~~~v~~l~GG~~~W~~~g~pv  181 (183)
                      ++|  | ||. +|.||..++..|++          +||++|++|+||+.+|.+++.|+
T Consensus        90 ~~ivvv~yC~~~g~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~~W~~~~~~~  147 (175)
T 2a2k_A           90 KRVILIFHSEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNF  147 (175)
T ss_dssp             CEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTCGGG
T ss_pred             CCeEEEEECCCCCCccHHHHHHHHHhhhhhhhhhhcCCceEEEEcCCHHHHHHHCccc
Confidence            776  4 698 99999999999985          49999999999999999988765

>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A

Probab=99.86  E-value=4.5e-21  Score=154.20  Aligned_cols=112  Identities=18%  Similarity=0.191  Sum_probs=93.7

Q ss_pred             CccccHHHHHHHHhC-----CCEEEEcC--------CHHhHhcCCCCCcEEeccccccC-----CCCCCCHHHHHHHhhc
Q 030091           72 PTSVPVRVAHELLQA-----GHRYLDVR--------TPEEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR  133 (183)
Q Consensus        72 ~~~i~~~~~~~~~~~-----~~~lIDvR--------~~~e~~~ghIpgAi~ip~~~~~~-----~~~~~~~~~~~~~~~~  133 (183)
                      ...|+++++.+++++     +++|||||        ++.||..||||||+|+|+..+..     ..++.+.+.+...+..
T Consensus         7 ~~~is~~~l~~~l~~~~~~~~~~liDvR~~~~~~~~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~l~~   86 (296)
T 1rhs_A            7 RALVSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKASPYEVMLPSEAGFADYVGS   86 (296)
T ss_dssp             CSEECHHHHHHHHHTTCCBTTEEEEECCCCCTTSCCHHHHHHHSBCTTCEECCTTTSSCTTSSSSSCCCCHHHHHHHHHH
T ss_pred             CceeeHHHHHHHHhccccCCCeEEEEecccCcCCcchhhhHhhCcCCCCEEeCHHHhcCCCCCCCCCCCCHHHHHHHHHH
Confidence            357899999999875     58999999        68999999999999999964432     2345566666666654


Q ss_pred             --CCCCCeEE-EeCC--ChH-HHHHHHHHHHcCCCCeeEecccHHHHHhCCCCCCC
Q 030091          134 --FRKHDEII-GCQS--GKR-SMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       134 --i~~~~~iv-~C~~--g~~-s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                        ++++++|| ||.+  |.+ +.++++.|+.+||++|++|+||+.+|.++|+|+++
T Consensus        87 lgi~~~~~vVvyc~~~~g~~~a~~a~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~  142 (296)
T 1rhs_A           87 LGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHPVTS  142 (296)
T ss_dssp             TTCCTTCEEEEECCCSSSCSSHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBC
T ss_pred             cCCCCCCeEEEEcCCCCCcchHHHHHHHHHHcCCCcEEEcCCCHHHHHHcCCcccc
Confidence              67889999 9998  876 78999999999999999999999999999999863

>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A

Probab=99.85  E-value=3.9e-21  Score=161.68  Aligned_cols=138  Identities=13%  Similarity=0.164  Sum_probs=105.6

Q ss_pred             eEEecCCccccccCcccCCccccC--------------CCCccccHHHHHHHHhC-CCEEEEcCCHHhH-----------
Q 030091           46 IGFISSKILSFCPKASLRGNLEAV--------------GVPTSVPVRVAHELLQA-GHRYLDVRTPEEF-----------   99 (183)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~i~~~~~~~~~~~-~~~lIDvR~~~e~-----------   99 (183)
                      +..++|++..|.............              .....++.+++.+++.. +.+|||||++.||           
T Consensus       231 v~~l~Gg~~~W~~~g~pv~~g~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~~l~~~~~~liDvR~~~e~~G~~~~~~~~~  310 (423)
T 2wlr_A          231 VRLLDGGWQTWSDAGLPVERGTPPKVKAEPDFGVKIPAQPQLMLDMEQARGLLHRQDASLVSIRSWPEFIGTTSGYSYIK  310 (423)
T ss_dssp             EEEETTTHHHHHHTTCCCBCSSCCCCCCCCCCSSCSCSCGGGEECHHHHHTTTTCSSEEEEECSCHHHHHTSCCSSTTCC
T ss_pred             eEEECCCHHHHhhCCCCcccCCCCCCCCCcCcccccCCChhheecHHHHHHHhcCCCceEEecCchhheeeeccCCCCCC
Confidence            568899999997532221111000              11234788999888765 4899999999999           


Q ss_pred             hcCCCCCcEEeccc-------cc-cCCCCCCCHHHHHHHhh--cCCCCCeEE-EeCCChHHHHHHHHHHHcCCCCeeEec
Q 030091          100 SAGHATGAINVPYM-------YR-VGSGMTKNLKFVEEVST--RFRKHDEII-GCQSGKRSMMAATDLLNAGFAGITDIA  168 (183)
Q Consensus       100 ~~ghIpgAi~ip~~-------~~-~~~~~~~~~~~~~~~~~--~i~~~~~iv-~C~~g~~s~~aa~~L~~~G~~~v~~l~  168 (183)
                      ..||||||+|+|+.       .. ...+.+.+.+.+...+.  .++++++|| ||.+|.||..++..|+.+||++|++|+
T Consensus       311 ~~GhIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ivvyC~sG~rs~~aa~~L~~~G~~~v~~~~  390 (423)
T 2wlr_A          311 PKGEIAGARWGHAGSDSTHMEDFHNPDGTMRSADDITAMWKAWNIKPEQQVSFYCGTGWRASETFMYARAMGWKNVSVYD  390 (423)
T ss_dssp             CCSEETTCEECCCCSSTTCCGGGBCTTSSBCCHHHHHHHHHTTTCCTTSEEEEECSSSHHHHHHHHHHHHTTCSSEEEES
T ss_pred             cCCCCCCccccccccccccHHHHcCCCCcCCCHHHHHHHHHHcCCCCCCcEEEECCcHHHHHHHHHHHHHcCCCCcceeC
Confidence            78999999999984       11 12344556667777664  478899999 999999999999999999999999999


Q ss_pred             ccHHHHHh-CCCCCCC
Q 030091          169 GGFAAWRQ-NGLPTEP  183 (183)
Q Consensus       169 GG~~~W~~-~g~pv~~  183 (183)
                      |||.+|.+ .++|+++
T Consensus       391 GG~~~W~~~~~~Pv~~  406 (423)
T 2wlr_A          391 GGWYEWSSDPKNPVAT  406 (423)
T ss_dssp             SHHHHHTTSTTSCEEC
T ss_pred             ccHHHHhcCCCCCccc
Confidence            99999998 7999863

>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}

Probab=99.85  E-value=7.2e-21  Score=153.58  Aligned_cols=113  Identities=19%  Similarity=0.181  Sum_probs=93.2

Q ss_pred             CCccccHHHHHHHHhC-----CCEEEEcC---------CHHhHhcCCCCCcEEecccccc-----CCCCCCCHHHHHHHh
Q 030091           71 VPTSVPVRVAHELLQA-----GHRYLDVR---------TPEEFSAGHATGAINVPYMYRV-----GSGMTKNLKFVEEVS  131 (183)
Q Consensus        71 ~~~~i~~~~~~~~~~~-----~~~lIDvR---------~~~e~~~ghIpgAi~ip~~~~~-----~~~~~~~~~~~~~~~  131 (183)
                      ....|+++++.+++++     +++|||||         ++.||..||||||+|+|+..+.     ..+++.+.+.+...+
T Consensus        20 ~~~lIs~~~l~~~l~~~~~~~~~~ilDvR~~~~~~~~~~~~ey~~gHIpGAi~i~~~~~~~~~~~~~~~lp~~~~~~~~~   99 (302)
T 3olh_A           20 FQSMVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFFDIDQCSDRTSPYDHMLPGAEHFAEYA   99 (302)
T ss_dssp             CCCEECHHHHHHHHHCCCSSCCEEEEECCCCCCC--CCHHHHHHHSCCTTCEECCTTTSSCSSCSSSSCCCCHHHHHHHH
T ss_pred             CCCccCHHHHHHHhcCcCCCCCEEEEEeecCCCccCcccHHHHhhCcCCCCeEeCHHHhcCcCCCCCCCCCCHHHHHHHH
Confidence            3457999999999875     68999999         7899999999999999985432     234556667777776


Q ss_pred             hc--CCCCCeEE-EeCC---ChHHHHHHHHHHHcCCCCeeEecccHHHHHhCCCCCCC
Q 030091          132 TR--FRKHDEII-GCQS---GKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       132 ~~--i~~~~~iv-~C~~---g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      ..  ++++++|| ||.+   +.+|.++++.|+.+||++|++|+||+.+|.++|+|+++
T Consensus       100 ~~lgi~~~~~VVvyc~~~~g~~~a~ra~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~  157 (302)
T 3olh_A          100 GRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAFGHHAVSLLDGGLRHWLRQNLPLSS  157 (302)
T ss_dssp             HHTTCCSSCEEEEECCCTTSCSSHHHHHHHHHHTTCCCEEEETTHHHHHHHSCCC-CC
T ss_pred             HHcCCCCCCEEEEEeCCCCCcchHHHHHHHHHHcCCCcEEECCCCHHHHHHcCCCccc
Confidence            66  47889999 9963   45689999999999999999999999999999999863

>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens}

Probab=99.85  E-value=5.5e-21  Score=147.26  Aligned_cols=97  Identities=20%  Similarity=0.268  Sum_probs=78.1

Q ss_pred             CCCccccHHHHHHHHhC-------CCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhc---C--CCC
Q 030091           70 GVPTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR---F--RKH  137 (183)
Q Consensus        70 ~~~~~i~~~~~~~~~~~-------~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~---i--~~~  137 (183)
                      .....|+++++.++++.       +++|||||++.||..||||||+|||+.           +.+...+..   +  +++
T Consensus        54 ~~~~~Is~~eL~~~l~~~~~~~~~~~~lIDVR~~~Ey~~GHIpGAinIP~~-----------~~l~~~l~~~~~~~~~~~  122 (216)
T 3op3_A           54 QDLKYVNPETVAALLSGKFQGLIEKFYVIDCRYPYEYLGGHIQGALNLYSQ-----------EELFNFFLKKPIVPLDTQ  122 (216)
T ss_dssp             SSSEEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTSEETTCEECCSH-----------HHHHHHHTSSCCCCSSTT
T ss_pred             CCCCEeCHHHHHHHHhCCCccccCCEEEEEeCcHHHHhcCCccCCEECChH-----------HHHHHHHhhccccccccC
Confidence            34678999999999976       379999999999999999999999994           434443321   2  234


Q ss_pred             C--eEE-EeC-CChHHHHHHHHHHHc----------CCCCeeEecccHHHHHhC
Q 030091          138 D--EII-GCQ-SGKRSMMAATDLLNA----------GFAGITDIAGGFAAWRQN  177 (183)
Q Consensus       138 ~--~iv-~C~-~g~~s~~aa~~L~~~----------G~~~v~~l~GG~~~W~~~  177 (183)
                      +  .|| ||. +|.||..++..|+..          ||++|++|+||+.+|.++
T Consensus       123 k~~~VVvyC~~SG~Rs~~aa~~L~~~~~~~~~y~~lGf~~V~~L~GG~~aW~~~  176 (216)
T 3op3_A          123 KRIIIVFHCEFSSERGPRMCRCLREEDRSLNQYPALYYPELYILKGGYRDFFPE  176 (216)
T ss_dssp             SEEEEEEECCC--CCHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTT
T ss_pred             CCCEEEEEeCCCChHHHHHHHHHHHcCcccccccccCCCcEEEECCcHHHHHHh
Confidence            4  388 999 999999999999876          899999999999999875

>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2

Probab=99.85  E-value=1.4e-21  Score=156.15  Aligned_cols=110  Identities=16%  Similarity=0.193  Sum_probs=91.9

Q ss_pred             ccccHHHHHHHHhC-CCEEEEcC-CHHhHhcCCCCCcEEecccccc---CCCCCCCHHHHHHHhhc--CCCCCeEE-EeC
Q 030091           73 TSVPVRVAHELLQA-GHRYLDVR-TPEEFSAGHATGAINVPYMYRV---GSGMTKNLKFVEEVSTR--FRKHDEII-GCQ  144 (183)
Q Consensus        73 ~~i~~~~~~~~~~~-~~~lIDvR-~~~e~~~ghIpgAi~ip~~~~~---~~~~~~~~~~~~~~~~~--i~~~~~iv-~C~  144 (183)
                      ..|+++++.+++++ +++||||| ++.||..||||||+|+|+....   ..+.+.+.+.+...+..  ++++++|| ||+
T Consensus         8 ~~is~~~l~~~l~~~~~~liDvR~~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~ivvyc~   87 (285)
T 1uar_A            8 VLVSTDWVQEHLEDPKVRVLEVDEDILLYDTGHIPGAQKIDWQRDFWDPVVRDFISEEEFAKLMERLGISNDTTVVLYGD   87 (285)
T ss_dssp             GEECHHHHHTTTTCTTEEEEEECSSTTHHHHCBCTTCEEECHHHHHBCSSSSSBCCHHHHHHHHHHTTCCTTCEEEEECH
T ss_pred             ceEcHHHHHHhcCCCCEEEEEcCCCcchhhcCcCCCCEECCchhhccCCcccCCCCHHHHHHHHHHcCCCCCCeEEEECC
Confidence            46899999988875 58999999 7899999999999999985321   12344555566666554  68899999 999


Q ss_pred             CCh-HHHHHHHHHHHcCCCCeeEecccHHHHHhCCCCCC
Q 030091          145 SGK-RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       145 ~g~-~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~  182 (183)
                      +|. +|..+++.|+.+||++|++|+||+.+|.++|+|++
T Consensus        88 ~g~~~s~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~  126 (285)
T 1uar_A           88 KNNWWAAYAFWFFKYNGHKDVRLMNGGRQKWVEEGRPLT  126 (285)
T ss_dssp             HHHHHHHHHHHHHHHTTCSCEEEETTHHHHHHHHTCCCB
T ss_pred             CCCccHHHHHHHHHHcCCCCeEEecCCHHHHHHCCCccc
Confidence            987 79999999999999999999999999999999886

>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A

Probab=99.84  E-value=7.5e-21  Score=147.67  Aligned_cols=98  Identities=33%  Similarity=0.498  Sum_probs=81.4

Q ss_pred             cccHHHHHHHHhCCCEEEEcCCHHhHhc----------CCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-E
Q 030091           74 SVPVRVAHELLQAGHRYLDVRTPEEFSA----------GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-G  142 (183)
Q Consensus        74 ~i~~~~~~~~~~~~~~lIDvR~~~e~~~----------ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~  142 (183)
                      .++.+++.+    +.+|||||++.||..          ||||||+|+|+..+....     +.+.  ...++++++|| |
T Consensus       122 ~i~~~e~~~----~~~liDvR~~~e~~~~~~~~~~~~~ghIpgA~~ip~~~~~~~~-----e~~~--~~~~~~~~~iv~~  190 (230)
T 2eg4_A          122 LLTADEAAR----HPLLLDVRSPEEFQGKVHPPCCPRGGRIPGSKNAPLELFLSPE-----GLLE--RLGLQPGQEVGVY  190 (230)
T ss_dssp             BCCHHHHHT----CSCEEECSCHHHHTTSCCCTTSSSCCBCTTCEECCGGGGGCCT-----THHH--HHTCCTTCEEEEE
T ss_pred             eeCHHHHhh----CCeEEeCCCHHHcCcccCCCCCccCCCCCCcEEcCHHHhCChH-----HHHH--hcCCCCCCCEEEE
Confidence            467777765    789999999999998          999999999996443221     1111  12578899999 9


Q ss_pred             eCCChHHHHHHHHHHHcCCCCeeEecccHHHHHhCCCCCCC
Q 030091          143 CQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       143 C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      |.+|.||..++..|+++| .+|++|+||+.+|.++|+|+++
T Consensus       191 C~~G~rs~~a~~~L~~~G-~~v~~~~Gg~~~W~~~g~p~~~  230 (230)
T 2eg4_A          191 CHSGARSAVAFFVLRSLG-VRARNYLGSMHEWLQEGLPTEP  230 (230)
T ss_dssp             CSSSHHHHHHHHHHHHTT-CEEEECSSHHHHHHHTTCCCBC
T ss_pred             cCChHHHHHHHHHHHHcC-CCcEEecCcHHHHhhcCCCCCC
Confidence            999999999999999999 8999999999999999999874

>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual specificity phosphatase, nucleus, cytoplasm, rhodanese domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A

Probab=99.84  E-value=1.9e-21  Score=142.03  Aligned_cols=108  Identities=18%  Similarity=0.171  Sum_probs=77.5

Q ss_pred             ccccHHHHHHHHhC---CCEEEEcCCHHhHhcCCCCCcEEeccccccC----CCCCCCHHHH-HHHhh--cCCCCCeEE-
Q 030091           73 TSVPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVG----SGMTKNLKFV-EEVST--RFRKHDEII-  141 (183)
Q Consensus        73 ~~i~~~~~~~~~~~---~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~----~~~~~~~~~~-~~~~~--~i~~~~~iv-  141 (183)
                      +.|+++++.+++++   +++|||||++.||..||||||+|||+..+..    .+.....+.+ .....  .++++++|| 
T Consensus         4 ~~Is~~~l~~~l~~~~~~~~iiDvR~~~ey~~gHIpgAinip~~~l~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~iVv   83 (153)
T 2vsw_A            4 TQIVTERLVALLESGTEKVLLIDSRPFVEYNTSHILEAININCSKLMKRRLQQDKVLITELIQHSAKHKVDIDCSQKVVV   83 (153)
T ss_dssp             EEECHHHHHHHHTSTTCCEEEEECSCHHHHHHCEETTCEECCCCHHHHHHHHTTSSCHHHHHHHSCSSCCCCCTTSEEEE
T ss_pred             ccccHHHHHHHHhcCCCCEEEEECCCHHHhccCccCCCeeeChHHHHHhhhhcCCcCHHHhcCchhhhhhccCCCCeEEE
Confidence            56889999999873   4899999999999999999999999952210    0000000110 00001  246788999 


Q ss_pred             EeCCChHHHHH------HHHHHHc--CCCCeeEecccHHHHHhCCCC
Q 030091          142 GCQSGKRSMMA------ATDLLNA--GFAGITDIAGGFAAWRQNGLP  180 (183)
Q Consensus       142 ~C~~g~~s~~a------a~~L~~~--G~~~v~~l~GG~~~W~~~g~p  180 (183)
                      ||++|.++..+      ++.|+.+  ||++|++|+||+.+|.+.+.+
T Consensus        84 yc~~g~~s~~a~~~~~~~~~L~~l~~G~~~v~~L~GG~~~W~~~~~~  130 (153)
T 2vsw_A           84 YDQSSQDVASLSSDCFLTVLLGKLEKSFNSVHLLAGGFAEFSRCFPG  130 (153)
T ss_dssp             ECSSCCCGGGSCTTSHHHHHHHHHHHHCSCEEEETTHHHHHHHHCGG
T ss_pred             EeCCCCcccccccchHHHHHHHHHHhCCCcEEEEeChHHHHHHhChh
Confidence            99999887655      5777744  999999999999999876433

>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}

Probab=99.84  E-value=7.8e-21  Score=150.37  Aligned_cols=101  Identities=21%  Similarity=0.252  Sum_probs=83.8

Q ss_pred             CCCccccHHHHHHHHhCC-CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhc--CCCCCeEE-EeCC
Q 030091           70 GVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEII-GCQS  145 (183)
Q Consensus        70 ~~~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~--i~~~~~iv-~C~~  145 (183)
                      .....|+++++.++++++ ++|||||++.||..||||||+|+|+..+        .++.......  .+++++|| ||.+
T Consensus       119 ~~~~~Is~~el~~ll~~~~~vlIDVR~~~Ey~~GHIpGAiniP~~~~--------~~~~~~l~~~l~~~kdk~IVvyC~~  190 (265)
T 4f67_A          119 NAGTYLSPEEWHQFIQDPNVILLDTRNDYEYELGTFKNAINPDIENF--------REFPDYVQRNLIDKKDKKIAMFCTG  190 (265)
T ss_dssp             CTTCEECHHHHHHHTTCTTSEEEECSCHHHHHHEEETTCBCCCCSSG--------GGHHHHHHHHTGGGTTSCEEEECSS
T ss_pred             CCCceECHHHHHHHhcCCCeEEEEeCCchHhhcCcCCCCEeCCHHHH--------HhhHHHHHHhhhhCCCCeEEEEeCC
Confidence            345679999999998764 9999999999999999999999998522        1222222222  36788999 9999


Q ss_pred             ChHHHHHHHHHHHcCCCCeeEecccHHHHHhCC
Q 030091          146 GKRSMMAATDLLNAGFAGITDIAGGFAAWRQNG  178 (183)
Q Consensus       146 g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g  178 (183)
                      |.||..+++.|++.||++|++|+||+.+|.++.
T Consensus       191 G~RS~~Aa~~L~~~Gf~nV~~L~GGi~aW~~~~  223 (265)
T 4f67_A          191 GIRCEKTTAYMKELGFEHVYQLHDGILNYLESI  223 (265)
T ss_dssp             SHHHHHHHHHHHHHTCSSEEEETTHHHHHHHHS
T ss_pred             ChHHHHHHHHHHHcCCCCEEEecCHHHHHHHhc
Confidence            999999999999999999999999999998763

>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}

Probab=99.83  E-value=7.8e-21  Score=138.96  Aligned_cols=102  Identities=21%  Similarity=0.272  Sum_probs=77.9

Q ss_pred             CccccHHHHHHHHhC-----CCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcC--CCCCeEE-Ee
Q 030091           72 PTSVPVRVAHELLQA-----GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEII-GC  143 (183)
Q Consensus        72 ~~~i~~~~~~~~~~~-----~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i--~~~~~iv-~C  143 (183)
                      ...|+++++.+++++     +++|||||++ ||..||||||+|||+..+.       ...+..+...+  ..+..|| ||
T Consensus         4 ~~~Is~~el~~~l~~~~~~~~~~lIDvR~~-ey~~gHIpGAinip~~~l~-------~~~~~~l~~~l~~~~~~~vV~yC   75 (152)
T 2j6p_A            4 YTYIKPEELVELLDNPDSLVKAAVIDCRDS-DRDCGFIVNSINMPTISCT-------EEMYEKLAKTLFEEKKELAVFHC   75 (152)
T ss_dssp             CEEECHHHHHHHHHSHHHHHTEEEEECCST-TGGGCBCTTCEECCTTTCC-------HHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             cCccCHHHHHHHHhCCCCCCCEEEEEcCcH-HhCcCcCCCcEECChhHhh-------HHHHHHHHHHhcccCCCEEEEEc
Confidence            356899999999876     6899999999 9999999999999995221       11222222222  2334577 89


Q ss_pred             -CCChHHHHHH----HHHHHcCC--CCeeEecccHHHHHhCCCCC
Q 030091          144 -QSGKRSMMAA----TDLLNAGF--AGITDIAGGFAAWRQNGLPT  181 (183)
Q Consensus       144 -~~g~~s~~aa----~~L~~~G~--~~v~~l~GG~~~W~~~g~pv  181 (183)
                       .+|.|+..++    +.|.+.||  .+|++|+||+.+|.+++.++
T Consensus        76 ~~sg~rs~~aa~~~~~~L~~~G~~~~~v~~L~GG~~~W~~~g~~~  120 (152)
T 2j6p_A           76 AQSLVRAPKGANRFALAQKKLGYVLPAVYVLRGGWEAFYHMYGDV  120 (152)
T ss_dssp             SSSSSHHHHHHHHHHHHHHHHTCCCSEEEEETTHHHHHHHHHTTT
T ss_pred             CCCCCccHHHHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHcCCC
Confidence             7999998887    77888997  58999999999999887765

>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3

Probab=99.83  E-value=5.8e-21  Score=158.29  Aligned_cols=109  Identities=17%  Similarity=0.078  Sum_probs=91.4

Q ss_pred             CccccHHHHHHHHhCCCEEEEcCC--------HHhHhcCCCCCcEEecccc-ccC-------CCCCCCHHHHHHHhh--c
Q 030091           72 PTSVPVRVAHELLQAGHRYLDVRT--------PEEFSAGHATGAINVPYMY-RVG-------SGMTKNLKFVEEVST--R  133 (183)
Q Consensus        72 ~~~i~~~~~~~~~~~~~~lIDvR~--------~~e~~~ghIpgAi~ip~~~-~~~-------~~~~~~~~~~~~~~~--~  133 (183)
                      ...|+++++.+++++ ++|||||+        +.||..||||||+|+|+.. +..       .+++.+.+.+...+.  .
T Consensus        13 ~~~Is~~el~~~l~~-~~iIDvR~~~~~~~~~~~ey~~gHIpGAi~ip~~~~l~~~~~~~~~~~~lp~~~~f~~~l~~~g   91 (373)
T 1okg_A           13 KVFLDPSEVADHLAE-YRIVDCRYSLKIKDHGSIQYAKEHVKSAIRADVDTNLSKLVPTSTARHPLPPXAEFIDWCMANG   91 (373)
T ss_dssp             CCEECHHHHTTCGGG-SEEEECCCCSSSTTTTTTHHHHCEETTCEECCTTTTSCCCCTTCCCSSCCCCHHHHHHHHHHTT
T ss_pred             CcEEcHHHHHHHcCC-cEEEEecCCccccccchhHHhhCcCCCCEEeCchhhhhcccccCCccccCCCHHHHHHHHHHcC
Confidence            467999999988877 99999998        6999999999999999964 322       244556666666554  3


Q ss_pred             CCCCCeEE-Ee-CCChHHH-HHHHHHHHcCCCCeeEecccHHHHHhCCCCCC
Q 030091          134 FRKHDEII-GC-QSGKRSM-MAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       134 i~~~~~iv-~C-~~g~~s~-~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~  182 (183)
                      ++++++|| || .+|.++. ++++.|+.+|| +|++|+||+.+|.++|+|++
T Consensus        92 i~~d~~VVvYc~~~G~rsa~ra~~~L~~~G~-~V~~L~GG~~aW~~~g~pv~  142 (373)
T 1okg_A           92 MAGELPVLCYDDECGAMGGCRLWWMLNSLGA-DAYVINGGFQACKAAGLEME  142 (373)
T ss_dssp             CSSSSCEEEECSSTTTTTHHHHHHHHHHHTC-CEEEETTTTHHHHTTTCCEE
T ss_pred             CCCCCeEEEEeCCCCchHHHHHHHHHHHcCC-eEEEeCCCHHHHHhhcCCcc
Confidence            67889999 99 6788886 99999999999 99999999999999999875

>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3

Probab=99.83  E-value=1.7e-21  Score=161.41  Aligned_cols=97  Identities=18%  Similarity=0.308  Sum_probs=80.4

Q ss_pred             hCCCEEEEcCCHHhHh-----------cCCCCCcEEecccccc--C-CCC-CCCHHHHHHHhhcC----CC---CCeEE-
Q 030091           85 QAGHRYLDVRTPEEFS-----------AGHATGAINVPYMYRV--G-SGM-TKNLKFVEEVSTRF----RK---HDEII-  141 (183)
Q Consensus        85 ~~~~~lIDvR~~~e~~-----------~ghIpgAi~ip~~~~~--~-~~~-~~~~~~~~~~~~~i----~~---~~~iv-  141 (183)
                      ..+.+|||||++.||.           .||||||+|||+..+.  . .+. +.+.+.++..+..+    ++   +++|| 
T Consensus       172 ~~~~~lIDvR~~~Ef~G~~~~~~~~~~~GhIpGAiniP~~~l~~~~~~~~~~~~~~~l~~~~~~~~~gi~~~~~d~~ivv  251 (373)
T 1okg_A          172 PPQAIITDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTRGDGKVLRSEEEIRHNIMTVVQGAGDAADLSSFVF  251 (373)
T ss_dssp             CTTCCEEECSCHHHHTCCSSCCTTCSSSSCSTTCEECCGGGGEECCSSSCEECCHHHHHHHHHTTCC-----CCCTTSEE
T ss_pred             ccCceEEeCCCHHHccccccccccCCcCccCCCcEEecHHHhhccCCCCCccCCHHHHHHHHHhhhcCCCcccCCCCEEE
Confidence            4558999999999999           9999999999997654  2 223 56667777776644    77   88899 


Q ss_pred             EeCCChHHHHHHHHHHHcCCCCeeEecccHHHHHh-CCCCC
Q 030091          142 GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ-NGLPT  181 (183)
Q Consensus       142 ~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~-~g~pv  181 (183)
                      ||++|.||..++..|+.+||++|++|+|||.+|.. .++|+
T Consensus       252 yC~sG~rs~~a~~~L~~~G~~~v~~~~GG~~~W~~~~~~pv  292 (373)
T 1okg_A          252 SCGSGVTACINIALVHHLGLGHPYLYCGSWSEYSGLFRPPI  292 (373)
T ss_dssp             ECSSSSTHHHHHHHHHHTTSCCCEECSSHHHHHHHHTHHHH
T ss_pred             ECCchHHHHHHHHHHHHcCCCCeeEeCChHHHHhcCCCCCc
Confidence            99999999999999999999999999999999987 57665

>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}

Probab=99.83  E-value=9.1e-21  Score=136.09  Aligned_cols=107  Identities=19%  Similarity=0.232  Sum_probs=73.6

Q ss_pred             cccHHHHHH--------HHhC-CCEEEEcCCHHhHhcCCCCCcEEeccccccCC-----CCCCCHHHHHHH-----hhcC
Q 030091           74 SVPVRVAHE--------LLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGS-----GMTKNLKFVEEV-----STRF  134 (183)
Q Consensus        74 ~i~~~~~~~--------~~~~-~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~-----~~~~~~~~~~~~-----~~~i  134 (183)
                      .|+++++.+        ++++ +++|||||++.||..||||||+|+|+......     +....++.+...     ...+
T Consensus         2 ~Is~~~l~~~l~~~~~~~l~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (142)
T 2ouc_A            2 IIYPNDLAKKMTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINCADKISRRRLQQGKITVLDLISCREGKDSFKRI   81 (142)
T ss_dssp             EECHHHHHHHHHC----------CEEEECSCHHHHHHEEETTCEECCCSSHHHHHHHHTTSSCHHHHHHTTSCTTHHHHH
T ss_pred             ccCHHHHHHHHHhcccccCCCCCCEEEEeCCHHHhhhhhccCccccCccHHHHHHHhhcCCcchhhhCCChhhhHHHhcc
Confidence            478888887        4443 58999999999999999999999999532110     100001111000     0000


Q ss_pred             CCCCeEE-EeCCChHH---------HHHHHHHHHcCCCCeeEecccHHHHHhCCCCCC
Q 030091          135 RKHDEII-GCQSGKRS---------MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       135 ~~~~~iv-~C~~g~~s---------~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~  182 (183)
                       ++++|| ||++|.++         ..++..|...|| +|++|+||+.+|.++|.++.
T Consensus        82 -~~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~-~v~~l~GG~~~w~~~g~~~~  137 (142)
T 2ouc_A           82 -FSKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGK-EPLVLKGGLSSFKQNHENLC  137 (142)
T ss_dssp             -HHSCEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTC-CCEEETTHHHHHTTTCGGGE
T ss_pred             -CCCcEEEEECCCCchhhcCcccHHHHHHHHHHHcCC-cEEEEccCHHHHHHHCHHhh
Confidence             257888 99998874         457888999999 99999999999999988763

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2

Probab=99.82  E-value=4.2e-20  Score=159.70  Aligned_cols=100  Identities=24%  Similarity=0.339  Sum_probs=86.5

Q ss_pred             CccccHHHHHHHHhC--CCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcC-CCCCeEE-EeCCCh
Q 030091           72 PTSVPVRVAHELLQA--GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-RKHDEII-GCQSGK  147 (183)
Q Consensus        72 ~~~i~~~~~~~~~~~--~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i-~~~~~iv-~C~~g~  147 (183)
                      ...|+++++.+++++  +++|||||++.||..||||||+|||+.           ++........ +++++|| ||++|.
T Consensus         6 ~~~is~~~l~~~l~~~~~~~liDvR~~~e~~~ghIpgAv~ip~~-----------~~~~~~~~l~~~~~~~iVvyc~~g~   74 (539)
T 1yt8_A            6 IAVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLS-----------RLELEIHARVPRRDTPITVYDDGEG   74 (539)
T ss_dssp             CEEECHHHHHHHHHHTCCBEEEECSCHHHHTTSBCTTCEECCGG-----------GHHHHHHHHSCCTTSCEEEECSSSS
T ss_pred             CcccCHHHHHHHHhCCCCeEEEECCCHHHHhcCcCCCCEECCHH-----------HHHHHHHhhCCCCCCeEEEEECCCC
Confidence            457899999998864  589999999999999999999999994           3333333333 4688999 999999


Q ss_pred             HHHHHHHHHHHcCCCCeeEecccHHHHHhCCCCCC
Q 030091          148 RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       148 ~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~  182 (183)
                      +|.++++.|+.+||+||++|+||+.+|.++|+|++
T Consensus        75 ~s~~a~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~  109 (539)
T 1yt8_A           75 LAPVAAQRLHDLGYSDVALLDGGLSGWRNAGGELF  109 (539)
T ss_dssp             HHHHHHHHHHHTTCSSEEEETTHHHHHHHTTCCCB
T ss_pred             hHHHHHHHHHHcCCCceEEeCCCHHHHHhcCCCcc
Confidence            99999999999999999999999999999999985

>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A

Probab=99.82  E-value=3.2e-20  Score=156.07  Aligned_cols=111  Identities=19%  Similarity=0.259  Sum_probs=95.9

Q ss_pred             ccccHHHHHHHHh---------CCCEEEEcC--CHHhHhcCCCCCcEEeccccccC--CCCCCCHHHHHHHhhc--CCCC
Q 030091           73 TSVPVRVAHELLQ---------AGHRYLDVR--TPEEFSAGHATGAINVPYMYRVG--SGMTKNLKFVEEVSTR--FRKH  137 (183)
Q Consensus        73 ~~i~~~~~~~~~~---------~~~~lIDvR--~~~e~~~ghIpgAi~ip~~~~~~--~~~~~~~~~~~~~~~~--i~~~  137 (183)
                      ..++++++.++++         .+++|||+|  ++.||..||||||+|+|+..+..  .+.+.+.+.+...+..  ++++
T Consensus       124 ~~i~~~~l~~~~~~~~~~~~~~~~~~liDvR~~~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~l~~~~~~~gi~~~  203 (423)
T 2wlr_A          124 QLVYPQWLHDLQQGKEVTAKPAGDWKVIEAAWGAPKLYLISHIPGADYIDTNEVESEPLWNKVSDEQLKAMLAKHGIRHD  203 (423)
T ss_dssp             GEECHHHHHHHHTTCCCTTCCSSCEEEEEEESSSCSHHHHCBCTTCEEEEGGGTEETTTTEECCHHHHHHHHHHTTCCTT
T ss_pred             cccCHHHHHHHhhccccccccCCCeEEEEecCCCchhhccCcCCCcEEcCHHHhccCCCCCCCCHHHHHHHHHHcCCCCC
Confidence            4688899988886         248999999  99999999999999999965543  3566777777777754  6888


Q ss_pred             CeEE-EeCCChHHHHHHHHHHHcCCCCeeEecccHHHHHhCCCCCCC
Q 030091          138 DEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       138 ~~iv-~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      ++|| ||.+|.+|..+++.|+.+||++|++|+||+.+|...|+|+++
T Consensus       204 ~~ivvyC~~G~~a~~~~~~L~~~G~~~v~~l~Gg~~~W~~~g~pv~~  250 (423)
T 2wlr_A          204 TTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGWQTWSDAGLPVER  250 (423)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHHTCSCEEEETTTHHHHHHTTCCCBC
T ss_pred             CeEEEECCCchHHHHHHHHHHHcCCCCeEEECCCHHHHhhCCCCccc
Confidence            9999 999999999999999999999999999999999999999863

>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A*

Probab=99.80  E-value=1.5e-20  Score=139.87  Aligned_cols=107  Identities=22%  Similarity=0.313  Sum_probs=78.1

Q ss_pred             CCCccccHHHHHHHHhC--------CCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcC-------
Q 030091           70 GVPTSVPVRVAHELLQA--------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-------  134 (183)
Q Consensus        70 ~~~~~i~~~~~~~~~~~--------~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i-------  134 (183)
                      ...+.|+++++.++++.        +++|||||+ .||..||||||+|||+..+...     ...+..+...+       
T Consensus        28 ~~~~~Is~~eL~~~l~~~~~~~~~~~~~iIDVR~-~Ey~~GHIpGAiniP~~~l~~~-----~~~l~~l~~~~~~~~~~~  101 (169)
T 3f4a_A           28 TNVKYLDPTELHRWMQEGHTTTLREPFQVVDVRG-SDYMGGHIKDGWHYAYSRLKQD-----PEYLRELKHRLLEKQADG  101 (169)
T ss_dssp             CSEEEECHHHHHHHHHHTSCTTTCCCEEEEECCS-TTCTTCEETTCEECCHHHHHHC-----HHHHHHHHHHHHHHHHTS
T ss_pred             CCCcEeCHHHHHHHHhcCCccCcCCCEEEEECCc-hHHccCcCCCCEECCHHHhhcc-----cccHHHHHHHHHhhcccc
Confidence            34567999999999874        379999999 9999999999999999522110     01122222211       


Q ss_pred             CCCCeEE-EeCCC-hHHHHHHHHHHH----cC--CCCeeEecccHHHHHhCCCCCC
Q 030091          135 RKHDEII-GCQSG-KRSMMAATDLLN----AG--FAGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       135 ~~~~~iv-~C~~g-~~s~~aa~~L~~----~G--~~~v~~l~GG~~~W~~~g~pv~  182 (183)
                      .++++|| ||.+| .|+..++..|.+    .|  +.+|++|+||+.+|.+++.|.+
T Consensus       102 ~~~~~IVvyC~sG~~Rs~~aa~~l~~~L~~~G~~~~~V~~L~GG~~aW~~~~~~~~  157 (169)
T 3f4a_A          102 RGALNVIFHCMLSQQRGPSAAMLLLRSLDTAELSRCRLWVLRGGFSRWQSVYGDDE  157 (169)
T ss_dssp             SSCEEEEEECSSSSSHHHHHHHHHHHTCCHHHHTTEEEEEETTHHHHHHHHHTTCT
T ss_pred             cCCCeEEEEeCCCCCcHHHHHHHHHHHHHHcCCCCCCEEEECCCHHHHHHHcCCcc
Confidence            1236888 99986 899888877654    36  5789999999999999876653

>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1

Probab=99.79  E-value=6.4e-20  Score=133.91  Aligned_cols=104  Identities=21%  Similarity=0.206  Sum_probs=77.0

Q ss_pred             CccccHHHHHHHHhC---CCEEEEcCCHHhHhcCCCCCcEEecccccc------C----CCCCCCHHHHHHHhhcCCCCC
Q 030091           72 PTSVPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRV------G----SGMTKNLKFVEEVSTRFRKHD  138 (183)
Q Consensus        72 ~~~i~~~~~~~~~~~---~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~------~----~~~~~~~~~~~~~~~~i~~~~  138 (183)
                      ...|+++++.+++++   +++|||||++.||..||||||+|+|+..+.      .    ...+...+ ....+..+++++
T Consensus        15 ~~~is~~~l~~~l~~~~~~~~liDvR~~~ey~~gHIpgAinip~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~   93 (154)
T 1hzm_A           15 AISKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPVRALFTRGE-DRDRFTRRCGTD   93 (154)
T ss_dssp             SSBSCCCCHHHHHHHCSSSCEEECCSTTHHHHHHTSSSCCCCCCSSHHHHTBCCSCCCTTTTSTTSH-HHHHHHHSTTSS
T ss_pred             ccccCHHHHHHHHhCCCCCEEEEEcCCHHHHhhccccCceEeCccHHHHhhhhcCcccHHHhCCCHH-HHHHHhccCCCC
Confidence            456788888888764   589999999999999999999999986432      1    11222222 223344567788


Q ss_pred             eEE-EeCCChHH-------HHHHHHHHHc---CCCCeeEecccHHHHHhC
Q 030091          139 EII-GCQSGKRS-------MMAATDLLNA---GFAGITDIAGGFAAWRQN  177 (183)
Q Consensus       139 ~iv-~C~~g~~s-------~~aa~~L~~~---G~~~v~~l~GG~~~W~~~  177 (183)
                      +|| ||.+|.++       ..+++.|+.+   ||+ |++|+||+.+|...
T Consensus        94 ~iVvyc~~g~~~~~~~~aa~~~~~~l~~l~~~G~~-v~~L~GG~~~W~~~  142 (154)
T 1hzm_A           94 TVVLYDESSSDWNENTGGESLLGLLLKKLKDEGCR-AFYLEGGFSKFQAE  142 (154)
T ss_dssp             CEEECCCSSSSSCSCSSCCSHHHHHHHHHHHTTCC-CEECCCCHHHHHHH
T ss_pred             eEEEEeCCCCccccccccchHHHHHHHHHHHCCCc-eEEEcChHHHHHHH
Confidence            899 99988765       3446667655   998 99999999999875

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=99.79  E-value=1.1e-19  Score=158.10  Aligned_cols=93  Identities=26%  Similarity=0.508  Sum_probs=83.9

Q ss_pred             CccccHHHHHHHHhCCCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChHHH
Q 030091           72 PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSM  150 (183)
Q Consensus        72 ~~~i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~s~  150 (183)
                      ...|+++++.++++++++|||||++.||..||||||+|+|+            +.+......++++++|| ||.+|.||.
T Consensus       488 ~~~i~~~~~~~~~~~~~~~iDvR~~~e~~~ghi~ga~~ip~------------~~l~~~~~~l~~~~~iv~~C~~g~rs~  555 (588)
T 3ics_A          488 VDTVQWHEIDRIVENGGYLIDVREPNELKQGMIKGSINIPL------------DELRDRLEEVPVDKDIYITCQLGMRGY  555 (588)
T ss_dssp             CCEECTTTHHHHHHTTCEEEECSCGGGGGGCBCTTEEECCH------------HHHTTCGGGSCSSSCEEEECSSSHHHH
T ss_pred             cceecHHHHHHHhcCCCEEEEcCCHHHHhcCCCCCCEECCH------------HHHHHHHhhCCCCCeEEEECCCCcHHH
Confidence            34588889999988889999999999999999999999999            45555566788999999 999999999


Q ss_pred             HHHHHHHHcCCCCeeEecccHHHHHhC
Q 030091          151 MAATDLLNAGFAGITDIAGGFAAWRQN  177 (183)
Q Consensus       151 ~aa~~L~~~G~~~v~~l~GG~~~W~~~  177 (183)
                      .+++.|++.||+ |++|+||+.+|.+.
T Consensus       556 ~a~~~l~~~G~~-v~~l~GG~~~w~~~  581 (588)
T 3ics_A          556 VAARMLMEKGYK-VKNVDGGFKLYGTV  581 (588)
T ss_dssp             HHHHHHHHTTCC-EEEETTHHHHHHHH
T ss_pred             HHHHHHHHcCCc-EEEEcchHHHHHhh
Confidence            999999999998 99999999999875

>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}

Probab=99.78  E-value=8.9e-19  Score=128.69  Aligned_cols=108  Identities=18%  Similarity=0.239  Sum_probs=75.6

Q ss_pred             CCCCccccHHHHHHHHhC---------CCEEEEcCCHHhHhcCCCCCcEEecccccc-----CCCCCCCHHHHHHH--hh
Q 030091           69 VGVPTSVPVRVAHELLQA---------GHRYLDVRTPEEFSAGHATGAINVPYMYRV-----GSGMTKNLKFVEEV--ST  132 (183)
Q Consensus        69 ~~~~~~i~~~~~~~~~~~---------~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~-----~~~~~~~~~~~~~~--~~  132 (183)
                      ......|+++++.++++.         +.+|||||++.||..||||||+|+|+..+.     ..+.......+...  ..
T Consensus         7 ~~~~~~is~~el~~~l~~~~~~~~~~~~~~liDvR~~~e~~~ghI~ga~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   86 (158)
T 3tg1_B            7 LASIKIIYPNDLAKKMTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINCADKISRRRLQQGKITVLDLISCREGKD   86 (158)
T ss_dssp             ----CEECHHHHHHHHCC----------CEEEECSCHHHHHHCCBTTCEECCCSSHHHHHHHTTSSCCHHHHTCCCCSSC
T ss_pred             CCCCcEecHHHHHHHHHhcccccCCCCCEEEEEcCCHHHHHhCCCCCceeechhHHHHHhhhhcCcccHHhhcCCHHHHH
Confidence            344567999999999873         489999999999999999999999996321     00000000000000  00


Q ss_pred             cC--CCCCeEE-EeCCC---------hHHHHHHHHHHHcCCCCeeEecccHHHHHhC
Q 030091          133 RF--RKHDEII-GCQSG---------KRSMMAATDLLNAGFAGITDIAGGFAAWRQN  177 (183)
Q Consensus       133 ~i--~~~~~iv-~C~~g---------~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~  177 (183)
                      .+  .++++|| ||.+|         .++..++..|.+.|| +|++|+|||.+|.+.
T Consensus        87 ~~~~~~~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~-~v~~L~GG~~~W~~~  142 (158)
T 3tg1_B           87 SFKRIFSKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGK-EPLVLKGGLSSFKQN  142 (158)
T ss_dssp             SSTTTTTSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTC-CEEEETTHHHHHTSS
T ss_pred             HHhccCCCeEEEEECCCCcccccCcchHHHHHHHHHHhCCC-cEEEeCCcHHHHHHH
Confidence            01  2467899 99998         468899999999999 699999999999765

>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}

Probab=99.78  E-value=2.1e-18  Score=140.39  Aligned_cols=104  Identities=19%  Similarity=0.345  Sum_probs=81.7

Q ss_pred             ccHHHHHHHHhCC-----CEEEEcCCHHhHh-----------cCCCCCcEEeccccccCC--CCCC-CHHHHHHHh----
Q 030091           75 VPVRVAHELLQAG-----HRYLDVRTPEEFS-----------AGHATGAINVPYMYRVGS--GMTK-NLKFVEEVS----  131 (183)
Q Consensus        75 i~~~~~~~~~~~~-----~~lIDvR~~~e~~-----------~ghIpgAi~ip~~~~~~~--~~~~-~~~~~~~~~----  131 (183)
                      ++.+++.+.++.+     .+|||+|++++|.           .||||||+|+|+..+...  .++. ..+.+...+    
T Consensus       186 ~~~~~v~~~v~~~~~~~~~~lvDaRs~~rf~G~~~ep~~~~r~GHIPGA~nlP~~~~ld~~~~~~~~~~e~l~~~l~~~~  265 (327)
T 3utn_X          186 VDYEEMFQLVKSGELAKKFNAFDARSLGRFEGTEPEPRSDIPSGHIPGTQPLPYGSLLDPETKTYPEAGEAIHATLEKAL  265 (327)
T ss_dssp             ECHHHHHHHHHTTCHHHHCEEEECSCHHHHHTSSCCSSSSCCCCBCTTEEECCGGGGSCTTTCCCCCTTHHHHHHHHHHH
T ss_pred             ecHHHHhhhhhcccccccceeeccCccceecccccCccccccCCCCCCCcccChhhccCCCCCCCCCcHHHHHHHHHHHH
Confidence            5677777777653     7899999999996           599999999999766643  2222 223322222    


Q ss_pred             ----hcCCCCCeEE-EeCCChHHHHHHHHHHHcCCCCeeEecccHHHHHhCC
Q 030091          132 ----TRFRKHDEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNG  178 (183)
Q Consensus       132 ----~~i~~~~~iv-~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g  178 (183)
                          ..++++++|| ||.+|.+|...+..|..+||++|++|+|+|.+|....
T Consensus       266 ~~~~~gid~~k~vI~yCgsGvtA~~~~laL~~lG~~~v~lYdGSWsEW~~r~  317 (327)
T 3utn_X          266 KDFHCTLDPSKPTICSCGTGVSGVIIKTALELAGVPNVRLYDGSWTEWVLKS  317 (327)
T ss_dssp             HHTTCCCCTTSCEEEECSSSHHHHHHHHHHHHTTCCSEEEESSHHHHHHHHH
T ss_pred             HHhhcCCCCCCCEEEECChHHHHHHHHHHHHHcCCCCceeCCCcHHHhcccc
Confidence                2467889999 9999999999999999999999999999999998653

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=99.77  E-value=1.2e-19  Score=156.91  Aligned_cols=90  Identities=28%  Similarity=0.471  Sum_probs=76.2

Q ss_pred             ccHHHHHHHHhCCCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChHHHHHH
Q 030091           75 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSMMAA  153 (183)
Q Consensus        75 i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~s~~aa  153 (183)
                      |+++++.++ +++++|||||++.||..+|||||+|+|+.            .+......++++++|| ||.+|.||..++
T Consensus       475 i~~~~~~~~-~~~~~~iDvR~~~e~~~~~i~ga~~ip~~------------~l~~~~~~~~~~~~iv~~c~~g~rs~~a~  541 (565)
T 3ntd_A          475 IHFDQIDNL-SEDQLLLDVRNPGELQNGGLEGAVNIPVD------------ELRDRMHELPKDKEIIIFSQVGLRGNVAY  541 (565)
T ss_dssp             ECTTTTTSC-CTTEEEEECSCGGGGGGCCCTTCEECCGG------------GTTTSGGGSCTTSEEEEECSSSHHHHHHH
T ss_pred             eeHHHHHhC-CCCcEEEEeCCHHHHhcCCCCCcEECCHH------------HHHHHHhhcCCcCeEEEEeCCchHHHHHH
Confidence            444444444 44589999999999999999999999994            3334455688999999 999999999999


Q ss_pred             HHHHHcCCCCeeEecccHHHHHhCC
Q 030091          154 TDLLNAGFAGITDIAGGFAAWRQNG  178 (183)
Q Consensus       154 ~~L~~~G~~~v~~l~GG~~~W~~~g  178 (183)
                      +.|++.|| +|++|+||+.+|.++|
T Consensus       542 ~~l~~~G~-~v~~l~gG~~~w~~~g  565 (565)
T 3ntd_A          542 RQLVNNGY-RARNLIGGYRTYKFAS  565 (565)
T ss_dssp             HHHHHTTC-CEEEETTHHHHHHHTC
T ss_pred             HHHHHcCC-CEEEEcChHHHHHhCc
Confidence            99999999 9999999999999875

>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A

Probab=99.74  E-value=3.4e-18  Score=132.63  Aligned_cols=91  Identities=18%  Similarity=0.118  Sum_probs=71.1

Q ss_pred             CCCEEEEcCCHHhHhcCCCCCcEEeccc--cccCC---CCCCCHHHHHHHhhcCCCCCeEE-EeCCCh-HHHHHHHHHHH
Q 030091           86 AGHRYLDVRTPEEFSAGHATGAINVPYM--YRVGS---GMTKNLKFVEEVSTRFRKHDEII-GCQSGK-RSMMAATDLLN  158 (183)
Q Consensus        86 ~~~~lIDvR~~~e~~~ghIpgAi~ip~~--~~~~~---~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~-~s~~aa~~L~~  158 (183)
                      ++++|||||++.||..||||||+|+|+.  .+...   +++.+.+.+...+..++.+++|| ||.+|. +|..+++.|+ 
T Consensus         5 ~~~~iiDvR~~~ey~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivvyc~~g~~~s~~a~~~L~-   83 (230)
T 2eg4_A            5 EDAVLVDTRPRPAYEAGHLPGARHLDLSAPKLRLREEAELKALEGGLTELFQTLGLRSPVVLYDEGLTSRLCRTAFFLG-   83 (230)
T ss_dssp             TTCEEEECSCHHHHHHCBCTTCEECCCCSCCCCCCSHHHHHHHHHHHHHHHHHTTCCSSEEEECSSSCHHHHHHHHHHH-
T ss_pred             CCEEEEECCChhhHhhCcCCCCEECCccchhcccCCCCCcCCCHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHHHH-
Confidence            3589999999999999999999999985  32110   01112244555566666688899 999988 9999999999 


Q ss_pred             cCCCCeeEecccHHHHHhCCCCCC
Q 030091          159 AGFAGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       159 ~G~~~v~~l~GG~~~W~~~g~pv~  182 (183)
                      +||+||++|+||   |.+  +|++
T Consensus        84 ~G~~~v~~l~GG---W~~--~p~~  102 (230)
T 2eg4_A           84 LGGLEVQLWTEG---WEP--YATE  102 (230)
T ss_dssp             HTTCCEEEECSS---CGG--GCCB
T ss_pred             cCCceEEEeCCC---Ccc--Cccc
Confidence            999999999999   976  6663

>1whb_A KIAA0055; deubiqutinating enzyme, UBPY, structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; NMR {Homo sapiens} SCOP: c.46.1.4

Probab=99.72  E-value=2.1e-17  Score=121.23  Aligned_cols=110  Identities=8%  Similarity=0.060  Sum_probs=73.9

Q ss_pred             CCCCccccHHHHHHHHhC---CCEEEEcCCHHhHhcCCCCCcEEeccccccCCC-------CCCCHHHHHHHhhcCCCCC
Q 030091           69 VGVPTSVPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSG-------MTKNLKFVEEVSTRFRKHD  138 (183)
Q Consensus        69 ~~~~~~i~~~~~~~~~~~---~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~-------~~~~~~~~~~~~~~i~~~~  138 (183)
                      ......|+++++.++++.   +++|||||++.||+.||||||+|||...+....       .+.  +.....+....+..
T Consensus        11 ~~~~~~i~~~~l~~~l~~~~~~~~liDvR~~~ey~~gHI~gainip~~~~~~~~~~~~l~~~lp--~~~~~~~~~~~~~~   88 (157)
T 1whb_A           11 TKEKGAITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLP--DDSKDTWKKRGNVE   88 (157)
T ss_dssp             CCCCSEECHHHHHHHHTCSSSCEEEEEESCHHHHHHCCBTTCEEECSSSCCTTCCHHHHHHSCC--TTHHHHHHGGGTSS
T ss_pred             cccCCccCHHHHHHHHhcCCCCeEEEECCCHHHHHhccccCCcccCHHHccCCCcHHHHHHHCC--hHHHHHHHhcCCCC
Confidence            345567999999998874   579999999999999999999999985332110       011  11112222222344


Q ss_pred             eEE-EeCCChH----HHHHHHHHHH----c----CCCC-eeEecccHHHHHhCCCCC
Q 030091          139 EII-GCQSGKR----SMMAATDLLN----A----GFAG-ITDIAGGFAAWRQNGLPT  181 (183)
Q Consensus       139 ~iv-~C~~g~~----s~~aa~~L~~----~----G~~~-v~~l~GG~~~W~~~g~pv  181 (183)
                      .|| ||.++.+    +..+++.|.+    .    ||.+ |++|+||+.+|.+. +|+
T Consensus        89 ~VVvy~~~~~~~~~~a~~~~~~L~~~L~~~~~~~~~~~~V~~L~GG~~aW~~~-~p~  144 (157)
T 1whb_A           89 YVVLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC-YPQ  144 (157)
T ss_dssp             EEEEECSSCCGGGCCTTCHHHHHHHTTTTTCSSCCCSSCCEEESSCHHHHHHH-CGG
T ss_pred             EEEEECCCCCccccccccHHHHHHHHHHHhccccccCCCeEEEcchHHHHHHH-Chh
Confidence            577 9987643    3456666662    2    4543 99999999999875 654

>2gwf_A Ubiquitin carboxyl-terminal hydrolase 8; protein-protein complex, E3 ligase, protein ubiquitination, hydrolase, protease, UBL conjugation pathway; 2.30A {Homo sapiens} SCOP: c.46.1.4

Probab=99.72  E-value=1.8e-17  Score=121.64  Aligned_cols=111  Identities=8%  Similarity=0.050  Sum_probs=72.8

Q ss_pred             CCCccccHHHHHHHHhC---CCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCC-----CCHHHHHHHhhcCCCCCeEE
Q 030091           70 GVPTSVPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMT-----KNLKFVEEVSTRFRKHDEII  141 (183)
Q Consensus        70 ~~~~~i~~~~~~~~~~~---~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~iv  141 (183)
                      .....|+++++.++++.   +++|||||++.||+.||||||+|||...+......     ..++.....+....+...||
T Consensus        17 ~~~~~is~~~l~~~l~~~~~~~~liDvR~~~ey~~gHI~gAinip~~~l~~~~~~~~l~~~lp~~~~~l~~~~~~~~~VV   96 (157)
T 2gwf_A           17 RGSGAITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPDDSKDTWKKRGNVEYVV   96 (157)
T ss_dssp             --CCEECHHHHHHHHHSTTSCEEEEECSCHHHHHHSCBTTCEECCGGGCCTTCCHHHHHHTSCHHHHHHHHTTTTSSEEE
T ss_pred             CCCCccCHHHHHHHHhcCCCCeEEEECCCHHHHHhcCccCCcccCHHHcCCCCcHHHHHHHcCHHHHHHHHhcCCCCEEE
Confidence            34557999999998874   58999999999999999999999998533211000     00111222333334445677


Q ss_pred             -EeCCChH----HHHHHHHHH----Hc----CCCC-eeEecccHHHHHhCCCCC
Q 030091          142 -GCQSGKR----SMMAATDLL----NA----GFAG-ITDIAGGFAAWRQNGLPT  181 (183)
Q Consensus       142 -~C~~g~~----s~~aa~~L~----~~----G~~~-v~~l~GG~~~W~~~g~pv  181 (183)
                       ||.+|.+    +..+++.|.    +.    ||.+ |++|+||+.+|.+. +|.
T Consensus        97 vy~~~~~~~~~~a~~~l~~L~~~L~~~~~~~~~~~~V~~L~GG~~aW~~~-~p~  149 (157)
T 2gwf_A           97 LLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC-YPQ  149 (157)
T ss_dssp             EECSSCCGGGCCTTCHHHHHHHHHHTSCCSSCCSSCCEEETTHHHHHHHH-CGG
T ss_pred             EEcCCCCccccCcccHHHHHHHHHHhhccccccCCceEEEccHHHHHHHH-Chh
Confidence             9987643    234555554    22    4544 99999999999874 654

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}

Probab=99.71  E-value=5.1e-19  Score=150.46  Aligned_cols=85  Identities=32%  Similarity=0.470  Sum_probs=0.0

Q ss_pred             HHHHHhC-CCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChHHHHHHHHHH
Q 030091           80 AHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSMMAATDLL  157 (183)
Q Consensus        80 ~~~~~~~-~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~s~~aa~~L~  157 (183)
                      +.+++++ +++|||||+++||..||||||+|+|+.            .+......++++++|| ||.+|.||..++..|+
T Consensus       379 ~~~~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~------------~l~~~~~~l~~~~~iv~~C~~G~rs~~a~~~L~  446 (466)
T 3r2u_A          379 HSEDITGNESHILDVRNDNEWNNGHLSQAVHVPHG------------KLLETDLPFNKNDVIYVHCQSGIRSSIAIGILE  446 (466)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHhCCCcEEEEeCCHHHHhcCcCCCCEECCHH------------HHHHHHhhCCCCCeEEEECCCChHHHHHHHHHH
Confidence            3444433 488999999999999999999999994            3444556688899999 9999999999999999


Q ss_pred             HcCCCCeeEecccHHHHHh
Q 030091          158 NAGFAGITDIAGGFAAWRQ  176 (183)
Q Consensus       158 ~~G~~~v~~l~GG~~~W~~  176 (183)
                      +.||++|++|+||+.+|.+
T Consensus       447 ~~G~~~v~~l~GG~~~W~~  465 (466)
T 3r2u_A          447 HKGYHNIINVNEGYKDIQL  465 (466)
T ss_dssp             -------------------
T ss_pred             HcCCCCEEEecChHHHHhh
Confidence            9999999999999999975

>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}

Probab=99.70  E-value=1e-16  Score=130.47  Aligned_cols=111  Identities=14%  Similarity=0.076  Sum_probs=91.0

Q ss_pred             CCccccHHHHHHHHhCC----CEEEEcC--------C-HHhH-hcCCCCCcEEecccccc-----CCCCCCCHHHHHHHh
Q 030091           71 VPTSVPVRVAHELLQAG----HRYLDVR--------T-PEEF-SAGHATGAINVPYMYRV-----GSGMTKNLKFVEEVS  131 (183)
Q Consensus        71 ~~~~i~~~~~~~~~~~~----~~lIDvR--------~-~~e~-~~ghIpgAi~ip~~~~~-----~~~~~~~~~~~~~~~  131 (183)
                      ....|+++++.+++..+    +++||++        + ..|| ++||||||++++++.+.     ..+++.+.+.+.+.+
T Consensus        26 ~~~LIsp~~l~~ll~~~~~~rvv~lDasw~lP~~~r~~~~E~~~~~HIPGAv~~Dld~~~d~~~~~ph~LP~~~~f~~~l  105 (327)
T 3utn_X           26 LFDLISPKAFVKLVASEKVHRIVPVDATWYLPSWKLDNKVDFLTKPRIPNSIFFDIDAISDKKSPYPHMFPTKKVFDDAM  105 (327)
T ss_dssp             SCEEECHHHHHHHHHHCSSSCEEEEECCCCCGGGCCCHHHHHHHSCBCTTCEECCTTTSSCTTSSSTTCCCCHHHHHHHH
T ss_pred             cccccCHHHHHHHHhCCCCCcEEEEEecCCCCCCCCCHHHHHHhhCcCCCCeeeChHHhcCCCCCCCCCCcCHHHHHHHH
Confidence            33479999999998643    7899985        3 4477 68999999999986432     346788888888887


Q ss_pred             hc--CCCCCeEE-EeCCC-hHHHHHHHHHHHcCCCCeeEecccHHHHHhCCCCCC
Q 030091          132 TR--FRKHDEII-GCQSG-KRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       132 ~~--i~~~~~iv-~C~~g-~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~  182 (183)
                      ..  |+++++|| |.+.+ ..|.+++|.|+.+|+++|++|+|| .+|.++|+|++
T Consensus       106 ~~lGI~~d~~VVvYD~~~~~~AaR~wW~Lr~~Gh~~V~vLdGg-~aW~~~g~p~~  159 (327)
T 3utn_X          106 SNLGVQKDDILVVYDRVGNFSSPRCAWTLGVMGHPKVYLLNNF-NQYREFKYPLD  159 (327)
T ss_dssp             HHTTCCTTCEEEEECSSSSSSHHHHHHHHHHTTCSEEEEESCH-HHHHHTTCCCB
T ss_pred             HHcCCCCCCEEEEEeCCCCcHHHHHHHHHHHcCCCceeecccH-HHHHHhCCCcc
Confidence            76  78899999 98865 558899999999999999999877 89999999986

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.69  E-value=1.9e-17  Score=140.92  Aligned_cols=102  Identities=19%  Similarity=0.205  Sum_probs=83.8

Q ss_pred             CCCCccccHHHHHHHHhCCCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCCh
Q 030091           69 VGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGK  147 (183)
Q Consensus        69 ~~~~~~i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~  147 (183)
                      .+.+..|+++++.++++++ +|||+|++.+|..||||||+|+|+.          ..+........+++++|| ||++|.
T Consensus       269 ~~~~~~is~~~l~~~l~~~-~iiD~R~~~~y~~ghIpGA~~i~~~----------~~~~~~~~~l~~~~~~vvvy~~~~~  337 (474)
T 3tp9_A          269 APERVDLPPERVRAWREGG-VVLDVRPADAFAKRHLAGSLNIPWN----------KSFVTWAGWLLPADRPIHLLAADAI  337 (474)
T ss_dssp             CCEECCCCGGGHHHHHHTS-EEEECSCHHHHHHSEETTCEECCSS----------TTHHHHHHHHCCSSSCEEEECCTTT
T ss_pred             cCCCceeCHHHHHHHhCCC-EEEECCChHHHhccCCCCeEEECcc----------hHHHHHHHhcCCCCCeEEEEECCCc
Confidence            3445678999999999887 9999999999999999999999984          123333333357788999 999876


Q ss_pred             HHHHHHHHHHHcCCCCeeEecccHHHHHhCCCCCC
Q 030091          148 RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       148 ~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~  182 (183)
                       +.++++.|+.+||++|+++.+|+.+|..++.+++
T Consensus       338 -~~~~~~~L~~~G~~~v~~~l~G~~~W~~~g~~~~  371 (474)
T 3tp9_A          338 -APDVIRALRSIGIDDVVDWTDPAAVDRAAPDDVA  371 (474)
T ss_dssp             -HHHHHHHHHHTTCCCEEEEECGGGGTTCCGGGEE
T ss_pred             -HHHHHHHHHHcCCcceEEecCcHHHHHhcccccc
Confidence             5569999999999999986779999998887654

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}

Probab=99.39  E-value=6.2e-13  Score=112.95  Aligned_cols=79  Identities=22%  Similarity=0.291  Sum_probs=60.9

Q ss_pred             CCCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChHHHHHHHHHHHcCCCCe
Q 030091           86 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRSMMAATDLLNAGFAGI  164 (183)
Q Consensus        86 ~~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~s~~aa~~L~~~G~~~v  164 (183)
                      ++++|||+|++.+|..||||||+|+|+.          ..+.......++++++|| ||+ +.++.++++.|+.+||++|
T Consensus       295 ~~~~ilD~R~~~~y~~gHIpGAv~ip~~----------~~~~~~~~~~~~~~~~vvly~~-~~~a~~a~~~L~~~G~~~v  363 (466)
T 3r2u_A          295 TNRLTFDLRSKEAYHGGHIEGTINIPYD----------KNFINQIGWYLNYDQEINLIGD-YHLVSKATHTLQLIGYDDI  363 (466)
T ss_dssp             CCSEEEECSCHHHHHHSCCTTCEECCSS----------TTHHHHHTTTCCTTSCEEEESC-HHHHHHHHHHHHTTTCCCE
T ss_pred             CCeEEEECCCHHHHhhCCCCCcEECCcc----------HHHHHHHHhccCCCCeEEEEEC-CchHHHHHHHhhhhhcccc
Confidence            4589999999999999999999999984          123333333467889999 999 5578899999999999999


Q ss_pred             eE-ecccHHHHH
Q 030091          165 TD-IAGGFAAWR  175 (183)
Q Consensus       165 ~~-l~GG~~~W~  175 (183)
                      +. ++|+...|.
T Consensus       364 ~~~l~g~~~~~~  375 (466)
T 3r2u_A          364 AGYQLPQSKIQT  375 (466)
T ss_dssp             EEEECCC-----
T ss_pred             cccccCcccccH
Confidence            86 667655443

>2f46_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.41A {Neisseria meningitidis Z2491}

Probab=97.90  E-value=1.8e-05  Score=57.17  Aligned_cols=82  Identities=18%  Similarity=0.196  Sum_probs=51.7

Q ss_pred             ccHHHHHHHHhCC-CEEEEcCCHHh------------HhcC-CCCCcEEeccccccCCCCCCCHHHHHHHhhcC-CCCCe
Q 030091           75 VPVRVAHELLQAG-HRYLDVRTPEE------------FSAG-HATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-RKHDE  139 (183)
Q Consensus        75 i~~~~~~~~~~~~-~~lIDvR~~~e------------~~~g-hIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i-~~~~~  139 (183)
                      ++++++..+.+.+ ..|||+|++.|            |..+ +|+|.+|+|....     ....+.+..+...+ ..+.+
T Consensus        30 ~~~~d~~~L~~~Gi~~IIdlR~~~E~~~~p~~~~~~~~~~~~gi~~~~~iPv~~~-----~~~~~~~~~~~~~l~~~~~p  104 (156)
T 2f46_A           30 LTKADAEQIAQLGIKTIICNRPDREEESQPDFAQIKQWLEQAGVTGFHHQPVTAR-----DIQKHDVETFRQLIGQAEYP  104 (156)
T ss_dssp             CCGGGHHHHHHHTCCEEEECSCTTSSTTCCCHHHHHHHHGGGTCCEEEECCCCTT-----TCCHHHHHHHHHHHHTSCSS
T ss_pred             CCHHHHHHHHHCCCCEEEECCCCccccCCCcHHHHHHHHHHCCCHhheECccCCC-----CCCHHHHHHHHHHHHhCCCC
Confidence            3456666666656 68999997665            3333 5998999998521     22344455444433 24678


Q ss_pred             EE-EeCCChHHHHHHHHH-HHcCC
Q 030091          140 II-GCQSGKRSMMAATDL-LNAGF  161 (183)
Q Consensus       140 iv-~C~~g~~s~~aa~~L-~~~G~  161 (183)
                      |+ ||.+|.|+..++..+ ...|.
T Consensus       105 VlvHC~sG~Rs~~l~al~l~~~g~  128 (156)
T 2f46_A          105 VLAYCRTGTRCSLLWGFRRAAEGM  128 (156)
T ss_dssp             EEEECSSSHHHHHHHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCC
Confidence            88 999999987443332 34454

>4erc_A Dual specificity protein phosphatase 23; alpha beta, phosphatase(hydrolase), hydrolase; 1.15A {Homo sapiens} PDB: 2img_A

Probab=93.93  E-value=0.079  Score=36.88  Aligned_cols=82  Identities=13%  Similarity=0.092  Sum_probs=45.8

Q ss_pred             HHHHHHHHhCC-CEEEEcCCHHhHhcCCCCCc--EEeccccccCCCCCCCHHHHHHHhhc----CCCCCeEE-EeCCCh-
Q 030091           77 VRVAHELLQAG-HRYLDVRTPEEFSAGHATGA--INVPYMYRVGSGMTKNLKFVEEVSTR----FRKHDEII-GCQSGK-  147 (183)
Q Consensus        77 ~~~~~~~~~~~-~~lIDvR~~~e~~~ghIpgA--i~ip~~~~~~~~~~~~~~~~~~~~~~----i~~~~~iv-~C~~g~-  147 (183)
                      .+++..+.+.+ ..|||+|+..+......+|-  +++|+.+.    ...+.+.+......    +..+.+|+ +|..|. 
T Consensus        25 ~~~~~~L~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~  100 (150)
T 4erc_A           25 PAHYQFLLDLGVRHLVSLTERGPPHSDSCPGLTLHRLRIPDF----CPPAPDQIDRFVQIVDEANARGEAVGVHCALGFG  100 (150)
T ss_dssp             HHHHHHHHHTTEEEEEECSSSCCTTGGGCTTSEEEECCCCTT----SCCCHHHHHHHHHHHHHHHHTTCEEEEECSSSSH
T ss_pred             HHHHHHHHHCCCCEEEEcCCCCCCcccccCCceEEEEecCCC----CCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence            55666666667 79999998766544444443  45555322    12223333333322    34567888 999885 


Q ss_pred             HHH-HHHH-HHHHcCCC
Q 030091          148 RSM-MAAT-DLLNAGFA  162 (183)
Q Consensus       148 ~s~-~aa~-~L~~~G~~  162 (183)
                      |+. .++. .+...|.+
T Consensus       101 Rsg~~~a~~l~~~~~~~  117 (150)
T 4erc_A          101 RTGTMLACYLVKERGLA  117 (150)
T ss_dssp             HHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHcCCC
Confidence            766 3333 33445653

>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1

Probab=93.66  E-value=0.0093  Score=43.53  Aligned_cols=22  Identities=18%  Similarity=0.451  Sum_probs=20.2

Q ss_pred             CEEEEcCCHHhHhcCCCCCcEEeccc
Q 030091           88 HRYLDVRTPEEFSAGHATGAINVPYM  113 (183)
Q Consensus        88 ~~lIDvR~~~e~~~ghIpgAi~ip~~  113 (183)
                      .++||||++.||.    |||+|+|..
T Consensus       122 ~~liDvRe~~E~~----pgA~~iprg  143 (168)
T 1v8c_A          122 GAVVRFREVEPLK----VGSLSIPQL  143 (168)
T ss_dssp             TEEEEEEEEEEEE----ETTEEEEEE
T ss_pred             eEEEECCChhhcC----CCCEEcChh
Confidence            3899999999999    999999984

>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual specicity protein phosphatase 23, DUS23_human, malate, structural genomics, PSI; 1.93A {Homo sapiens}

Probab=91.70  E-value=0.26  Score=34.13  Aligned_cols=82  Identities=12%  Similarity=0.096  Sum_probs=43.7

Q ss_pred             cHHHHHHHHhCC-CEEEEcCCHHhHhcCCCCC--cEEeccccccCCCCCCCHHHHHHHhh----cCCCCCeEE-EeCCCh
Q 030091           76 PVRVAHELLQAG-HRYLDVRTPEEFSAGHATG--AINVPYMYRVGSGMTKNLKFVEEVST----RFRKHDEII-GCQSGK  147 (183)
Q Consensus        76 ~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIpg--Ai~ip~~~~~~~~~~~~~~~~~~~~~----~i~~~~~iv-~C~~g~  147 (183)
                      ..+....+.+.+ ..|||+|+..|+....+++  -+++|+.+..    ..+.+.+....+    .+..+.+|+ +|..|.
T Consensus        25 ~~~~~~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~~~~d~~----~p~~~~~~~~~~~i~~~~~~~~~vlVHC~aG~  100 (151)
T 2img_A           25 LPAHYQFLLDLGVRHLVSLTERGPPHSDSCPGLTLHRLRIPDFC----PPAPDQIDRFVQIVDEANARGEAVGVHCALGF  100 (151)
T ss_dssp             SHHHHHHHHHTTEEEEEECSSSCCTTGGGCTTSEEEECCCCTTC----CCCHHHHHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cHHHHHHHHHCCCCEEEECCCCCCCCHHHHhhCCeEEEeCCCCC----CCCHHHHHHHHHHHHHHHhCCCcEEEECCCCC
Confidence            345555665666 7899999876654333333  3556653211    122333333222    234567888 999874


Q ss_pred             -HHHH-HHHHHHHc-CC
Q 030091          148 -RSMM-AATDLLNA-GF  161 (183)
Q Consensus       148 -~s~~-aa~~L~~~-G~  161 (183)
                       |+.. ++..|... |.
T Consensus       101 ~Rsg~~~~~~l~~~~~~  117 (151)
T 2img_A          101 GRTGTMLACYLVKERGL  117 (151)
T ss_dssp             SHHHHHHHHHHHHHHCC
T ss_pred             ChHHHHHHHHHHHHhCc
Confidence             6553 33333333 65

>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG for eukaryotic structural genomics, phosphoprote phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1 PDB: 2q47_A

Probab=88.11  E-value=0.86  Score=31.59  Aligned_cols=84  Identities=8%  Similarity=-0.034  Sum_probs=42.9

Q ss_pred             HHHHHHHhCC-CEEEEcCCHHhHhc-------CCCCCcEEeccccccCCCCCCCHHHHHHHhhcC-C-CCCeEE-EeCCC
Q 030091           78 RVAHELLQAG-HRYLDVRTPEEFSA-------GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-R-KHDEII-GCQSG  146 (183)
Q Consensus        78 ~~~~~~~~~~-~~lIDvR~~~e~~~-------ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i-~-~~~~iv-~C~~g  146 (183)
                      .++..+.+.+ ..|||+|+..|...       ..| .-+++|..+..........+.+.+.++.+ . .+.+|+ +|..|
T Consensus        24 ~d~~~L~~~gi~~Vi~l~~~~e~~~~~~~~~~~gi-~~~~ipi~d~~~~~~~~~~~~~~~~~~~i~~~~~~~vlvHC~aG  102 (151)
T 1xri_A           24 ANFSFLQTLGLRSIIYLCPEPYPESNLQFLKSNGI-RLFQFGIEGNKEPFVNIPDHKIRMALKVLLDEKNHPVLIHCKRG  102 (151)
T ss_dssp             HHHHHHHHHTCSEEEECCSSCCCHHHHHHHHHHTC-EEEECCCCCCCGGGCCCCHHHHHHHHHHHHCGGGCSEEEECSSS
T ss_pred             cCHHHHHHCCCCEEEECCCCCcChhHHHHHHhcCC-eEEecccccccCccccCCHHHHHHHHHHHHcCCCCCEEEECCCC
Confidence            4444444445 68999997654321       112 12566663211111112334444444432 2 456788 99988


Q ss_pred             h-HHHH-HHHHHHHcCCC
Q 030091          147 K-RSMM-AATDLLNAGFA  162 (183)
Q Consensus       147 ~-~s~~-aa~~L~~~G~~  162 (183)
                      . |+.. ++..+...|.+
T Consensus       103 ~~RTg~~~a~~l~~~g~~  120 (151)
T 1xri_A          103 KHRTGCLVGCLRKLQKWC  120 (151)
T ss_dssp             SSHHHHHHHHHHHHTTBC
T ss_pred             CCHHHHHHHHHHHHhCCC
Confidence            5 7664 44445556653

>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase; 2.10A {Homo sapiens}

Probab=86.48  E-value=0.82  Score=31.56  Aligned_cols=79  Identities=15%  Similarity=0.172  Sum_probs=39.4

Q ss_pred             HHHHHhCC-CEEEEcCCHHhHhcCCCCCc---EEeccccccCCCCCCC-HHHHHHHhhcCCCCCeEE-EeCCC-hHHHH-
Q 030091           80 AHELLQAG-HRYLDVRTPEEFSAGHATGA---INVPYMYRVGSGMTKN-LKFVEEVSTRFRKHDEII-GCQSG-KRSMM-  151 (183)
Q Consensus        80 ~~~~~~~~-~~lIDvR~~~e~~~ghIpgA---i~ip~~~~~~~~~~~~-~~~~~~~~~~i~~~~~iv-~C~~g-~~s~~-  151 (183)
                      +..+.+.+ ..|||+++..+   ...|+.   .++|..+......... .+....+......+.+|+ +|..| .||.. 
T Consensus        22 ~~~L~~~gi~~Vi~l~~~~~---~~~~~~~~~~~ipi~D~~~~~l~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~   98 (145)
T 2nt2_A           22 LEDLQNRGVRYILNVTREID---NFFPGVFEYHNIRVYDEEATDLLAYWNDTYKFISKAKKHGSKCLVHSKMGVSRSAST   98 (145)
T ss_dssp             HHHHHHTTEEEEEECCSSSC---CSCBTTBEEEECCCCSSTTCCCGGGHHHHHHHHHHHHHTTCEEEEECSSSSSHHHHH
T ss_pred             HHHHHHCCCCEEEEeCCCCc---cCCCCCcEEEEEEEeCCCCCcHHHHHHHHHHHHHHHHHcCCeEEEECCCCCchHHHH
Confidence            34444556 68999997543   112322   4666643221111110 111112222233567788 99988 67753 


Q ss_pred             -HHHHHHHcCC
Q 030091          152 -AATDLLNAGF  161 (183)
Q Consensus       152 -aa~~L~~~G~  161 (183)
                       ++..+...|.
T Consensus        99 v~ayLm~~~~~  109 (145)
T 2nt2_A           99 VIAYAMKEYGW  109 (145)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHhCC
Confidence             3455555665

>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich, hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB: 1fq1_A*

Probab=86.15  E-value=1.7  Score=32.08  Aligned_cols=78  Identities=22%  Similarity=0.190  Sum_probs=39.9

Q ss_pred             HHHHHHHHhCC-CEEEEcCCHHhHhcCCCC---------C--cEEeccccccCCCCCCCHHHHHHHhh----cCCCCCeE
Q 030091           77 VRVAHELLQAG-HRYLDVRTPEEFSAGHAT---------G--AINVPYMYRVGSGMTKNLKFVEEVST----RFRKHDEI  140 (183)
Q Consensus        77 ~~~~~~~~~~~-~~lIDvR~~~e~~~ghIp---------g--Ai~ip~~~~~~~~~~~~~~~~~~~~~----~i~~~~~i  140 (183)
                      .+++..+.+.+ ..|||+|+..|...-.++         |  -+++|+.+..    ..+.+.+.....    .+..+.+|
T Consensus        61 ~~d~~~L~~~gi~~Vv~l~~~~E~~~~~~~~~~~~~~~~gi~~~~~pi~d~~----~p~~~~~~~~~~~i~~~~~~~~~V  136 (212)
T 1fpz_A           61 QKDTEELKSCGIQDIFVFCTRGELSKYRVPNLLDLYQQCGIITHHHPIADGG----TPDIASCCEIMEELTTCLKNYRKT  136 (212)
T ss_dssp             HHHHHHHHHHTCCEEEECCCHHHHHHTTCTTHHHHHHHTTCEEEECCCCTTC----CCCHHHHHHHHHHHHHHHHTTCCE
T ss_pred             HHHHHHHHHCCCCEEEEcCCHHHHHhcCCccHHHHHHHcCCEEEEecCCCCC----CCCHHHHHHHHHHHHHHHhCCCCE
Confidence            45555555556 789999998665321111         2  2455553211    112222222222    23356678


Q ss_pred             E-EeCCCh-HHH-HHHHHHHH
Q 030091          141 I-GCQSGK-RSM-MAATDLLN  158 (183)
Q Consensus       141 v-~C~~g~-~s~-~aa~~L~~  158 (183)
                      + +|..|. |+. .++..|..
T Consensus       137 lVHC~aG~gRTg~~~a~~L~~  157 (212)
T 1fpz_A          137 LIHSYGGLGRSCLVAACLLLY  157 (212)
T ss_dssp             EEECSSSSSHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHH
Confidence            8 999874 655 34444444

>2r0b_A Serine/threonine/tyrosine-interacting protein; structural genomics, phosphatase, PSI-2, protein structure initiative; 1.60A {Homo sapiens}

Probab=85.79  E-value=2.9  Score=28.88  Aligned_cols=84  Identities=12%  Similarity=0.035  Sum_probs=40.6

Q ss_pred             HHHHHHhCC-CEEEEcCCHHhHhc--CCCC-Cc--EEeccccccCCCCCCC-HHHHHHHhhcCCCCCeEE-EeCCC-hHH
Q 030091           79 VAHELLQAG-HRYLDVRTPEEFSA--GHAT-GA--INVPYMYRVGSGMTKN-LKFVEEVSTRFRKHDEII-GCQSG-KRS  149 (183)
Q Consensus        79 ~~~~~~~~~-~~lIDvR~~~e~~~--ghIp-gA--i~ip~~~~~~~~~~~~-~~~~~~~~~~i~~~~~iv-~C~~g-~~s  149 (183)
                      ++..+.+.+ ..|||+|+..|-..  -..+ |-  +++|..+......... ......+...+..+.+|+ +|..| .||
T Consensus        25 d~~~L~~~gI~~Vi~l~~~~e~~~~~~~~~~~~~~~~ip~~d~~~~~l~~~~~~~~~~i~~~~~~~~~vlvHC~aG~~RS  104 (154)
T 2r0b_A           25 KLPVLQKHGITHIICIRQNIEANFIKPNFQQLFRYLVLDIADNPVENIIRFFPMTKEFIDGSLQMGGKVLVHGNAGISRS  104 (154)
T ss_dssp             GHHHHHHTTCCEEEEEECGGGTTTSSCCCTTTSEEEEEECCSSTTSCCGGGHHHHHHHHHHHHHTTCCEEEECSSSSSHH
T ss_pred             cHHHHHHcCCeEEEEeCCccccccCCCCCcCceeEEEEECCCCCcccHHHHHHHHHHHHHHHHhcCCCEEEEcCCCCChH
Confidence            344444556 68999998766321  1222 22  4566643221111110 111111112233556777 99988 677


Q ss_pred             HH-H-HHHHHHcCCC
Q 030091          150 MM-A-ATDLLNAGFA  162 (183)
Q Consensus       150 ~~-a-a~~L~~~G~~  162 (183)
                      .. + +..+...|.+
T Consensus       105 ~~~~~ayl~~~~~~~  119 (154)
T 2r0b_A          105 AAFVIAYIMETFGMK  119 (154)
T ss_dssp             HHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHcCCC
Confidence            64 3 3444456653

>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase, nucleus; 2.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1m3g_A

Probab=85.62  E-value=2.2  Score=29.23  Aligned_cols=80  Identities=16%  Similarity=0.148  Sum_probs=38.5

Q ss_pred             HHHHhCC-CEEEEcCCHHhH-hcCCCCCcEEeccccccCCCCCCC-HHHHHHHhhcCCCCCeEE-EeCCCh-HHH-H-HH
Q 030091           81 HELLQAG-HRYLDVRTPEEF-SAGHATGAINVPYMYRVGSGMTKN-LKFVEEVSTRFRKHDEII-GCQSGK-RSM-M-AA  153 (183)
Q Consensus        81 ~~~~~~~-~~lIDvR~~~e~-~~ghIpgAi~ip~~~~~~~~~~~~-~~~~~~~~~~i~~~~~iv-~C~~g~-~s~-~-aa  153 (183)
                      ..+.+.+ ..|||+++.... ...++ .-.++|+.+......... .+..+.+......+.+|+ +|..|. ||. . ++
T Consensus        23 ~~L~~~gI~~Vi~l~~~~~~~~~~~~-~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~~~~a  101 (144)
T 3ezz_A           23 DMLDALGITALLNVSSDCPNHFEGHY-QYKCIPVEDNHKADISSWFMEAIEYIDAVKDCRGRVLVHSQAGISRSATICLA  101 (144)
T ss_dssp             HHHHHTTCCEEEECSSSCCCTTTTTS-EEEECCCCSSSSCCTTTTHHHHHHHHHHHHHTTCCEEEEESSSSSHHHHHHHH
T ss_pred             HHHHHCCCeEEEEccCCCCccCCCCc-eEEEEEcccCCCCChHHHHHHHHHHHHHHHhcCCeEEEECCCCCChhHHHHHH
Confidence            3344455 789999974321 11111 124666643332222222 222222222234556777 999884 765 3 33


Q ss_pred             HHHHHcCC
Q 030091          154 TDLLNAGF  161 (183)
Q Consensus       154 ~~L~~~G~  161 (183)
                      ..+...|.
T Consensus       102 ylm~~~~~  109 (144)
T 3ezz_A          102 YLMMKKRV  109 (144)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHcCC
Confidence            44445665

>2hcm_A Dual specificity protein phosphatase; structural genomics, PSI, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Mus musculus}

Probab=84.33  E-value=1  Score=31.80  Aligned_cols=76  Identities=22%  Similarity=0.319  Sum_probs=38.3

Q ss_pred             HHHhCC-CEEEEcCCHHhHhcCCCCCc--EEeccccccCCCCCCCHHHHHHH---h-hcCCCCCeEE-EeCCC-hHHHH-
Q 030091           82 ELLQAG-HRYLDVRTPEEFSAGHATGA--INVPYMYRVGSGMTKNLKFVEEV---S-TRFRKHDEII-GCQSG-KRSMM-  151 (183)
Q Consensus        82 ~~~~~~-~~lIDvR~~~e~~~ghIpgA--i~ip~~~~~~~~~~~~~~~~~~~---~-~~i~~~~~iv-~C~~g-~~s~~-  151 (183)
                      .+.+.+ ..|||+|+..+..  ...|-  +++|..+.....   ..+.+...   + ..+..+.+|+ +|..| .||.. 
T Consensus        32 ~L~~~gI~~Vi~l~~~~~~~--~~~~~~~~~ip~~D~~~~~---~~~~~~~~~~~i~~~~~~~~~VlVHC~aG~~RSg~~  106 (164)
T 2hcm_A           32 LLVRAGITLCVNVSRQQPGP--RAPGVAELRVPVFDDPAED---LLTHLEPTCAAMEAAVRDGGSCLVYCKNGRSRSAAV  106 (164)
T ss_dssp             HHHHTTEEEEEECSSSCCCC--CCTTCEEEECCCCSCTTSC---CHHHHHHHHHHHHHHHHTTCEEEEEESSSSHHHHHH
T ss_pred             HHHHCCCeEEEEcCCCCCCC--CCCCCEEEEEeCcCCCCch---HHHHHHHHHHHHHHHHHcCCEEEEECCCCCchHHHH
Confidence            344456 6899999865321  11232  455653221111   11122221   1 2234567888 99988 67663 


Q ss_pred             -HHHHHHHcCCC
Q 030091          152 -AATDLLNAGFA  162 (183)
Q Consensus       152 -aa~~L~~~G~~  162 (183)
                       ++..+...|.+
T Consensus       107 ~~ayLm~~~~~~  118 (164)
T 2hcm_A          107 CTAYLMRHRGHS  118 (164)
T ss_dssp             HHHHHHHHSCCC
T ss_pred             HHHHHHHHhCCC
Confidence             34555666653

>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase; HET: BOG; 2.40A {Homo sapiens}

Probab=84.21  E-value=1.4  Score=30.89  Aligned_cols=78  Identities=10%  Similarity=0.101  Sum_probs=37.6

Q ss_pred             HHHhCC-CEEEEcCCHHhHhcCCCCC--cEEeccccccCCCCCCC-HHHHHHHhhcCCCCCeEE-EeCCC-hHHHH--HH
Q 030091           82 ELLQAG-HRYLDVRTPEEFSAGHATG--AINVPYMYRVGSGMTKN-LKFVEEVSTRFRKHDEII-GCQSG-KRSMM--AA  153 (183)
Q Consensus        82 ~~~~~~-~~lIDvR~~~e~~~ghIpg--Ai~ip~~~~~~~~~~~~-~~~~~~~~~~i~~~~~iv-~C~~g-~~s~~--aa  153 (183)
                      .+.+.+ ..|||+|+..+..   ..|  -+++|+.+......... .+....+...+..+.+|+ +|..| .||..  ++
T Consensus        28 ~L~~~gI~~Vi~l~~~~~~~---~~~i~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~aG~~RSg~~~~a  104 (160)
T 1yz4_A           28 QLGRNKITHIISIHESPQPL---LQDITYLRIPVADTPEVPIKKHFKECINFIHCCRLNGGNCLVHSFAGISRSTTIVTA  104 (160)
T ss_dssp             HHHHTTCCEEEEECSSCCCC---CTTCEEEEECCCSCTTSCGGGGHHHHHHHHHHHHHTTCCEEEEETTSSSHHHHHHHH
T ss_pred             HHHHCCCeEEEEccCCCCCc---cCCCeEEEEECCCCCCccHHHHHHHHHHHHHHHHHcCCeEEEECCCCCchHHHHHHH
Confidence            333445 6899999754321   222  24666642221111110 111211122233456787 99988 67763  34


Q ss_pred             HHHHHcCCC
Q 030091          154 TDLLNAGFA  162 (183)
Q Consensus       154 ~~L~~~G~~  162 (183)
                      ..+...|.+
T Consensus       105 ylm~~~~~~  113 (160)
T 1yz4_A          105 YVMTVTGLG  113 (160)
T ss_dssp             HHHHHHCCC
T ss_pred             HHHHHcCCC
Confidence            444556653

>1ywf_A Phosphotyrosine protein phosphatase PTPB; four stranded parallel beta sheet with flanking helices, structural genomics, PSI; 1.71A {Mycobacterium tuberculosis} SCOP: c.45.1.5 PDB: 2oz5_A*

Probab=81.78  E-value=6.1  Score=30.98  Aligned_cols=41  Identities=17%  Similarity=0.226  Sum_probs=27.2

Q ss_pred             ccccHHHHHHHHhCC-CEEEEcCCHHhHhcC----CCCCc--EEeccc
Q 030091           73 TSVPVRVAHELLQAG-HRYLDVRTPEEFSAG----HATGA--INVPYM  113 (183)
Q Consensus        73 ~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~g----hIpgA--i~ip~~  113 (183)
                      ..++.+++..+.+-+ -.|||.|++.|....    ..+|.  +|+|+.
T Consensus        54 ~~lt~~d~~~L~~lGI~tVIDLR~~~E~~~~~pd~~~~Gi~~~~iPi~  101 (296)
T 1ywf_A           54 SRLDDAGRATLRRLGITDVADLRSSREVARRGPGRVPDGIDVHLLPFP  101 (296)
T ss_dssp             TTCCHHHHHHHHHHTCCEEEECCCHHHHHHHCSCCCCTTCEEEECCCC
T ss_pred             ccCCHHHHHHHHhCCCCEEEECcChhhhhccCCCCCCCCCEEEEecCc
Confidence            346778877776656 689999998885421    34454  466653

>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES; 1.50A {Homo sapiens}

Probab=80.79  E-value=2.3  Score=30.05  Aligned_cols=79  Identities=14%  Similarity=0.170  Sum_probs=37.4

Q ss_pred             HHHhCC-CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCC-HHHHHHHhhcCCCCCeEE-EeCCC-hHHHH--HHHH
Q 030091           82 ELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKN-LKFVEEVSTRFRKHDEII-GCQSG-KRSMM--AATD  155 (183)
Q Consensus        82 ~~~~~~-~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~-~~~~~~~~~~i~~~~~iv-~C~~g-~~s~~--aa~~  155 (183)
                      .+.+.+ ..|||+|+..+-...+| .-+++|..+......... .+.+..+......+.+|+ +|..| .||..  ++..
T Consensus        27 ~L~~~gI~~Vi~l~~~~~~~~~~i-~~~~ip~~D~~~~~l~~~~~~~~~fi~~~~~~~~~VlVHC~aG~~RSg~~~~ayL  105 (165)
T 1wrm_A           27 QLSKNKVTHILSVHDSARPMLEGV-KYLCIPAADSPSQNLTRHFKESIKFIHECRLRGESCLVHCLAGVSRSVTLVIAYI  105 (165)
T ss_dssp             HHHHTTEEEEEECSTTCCCCSTTC-EEEECCCCSSTTSCCGGGHHHHHHHHHHHHHTTCEEEEECSSSSSHHHHHHHHHH
T ss_pred             HHHHCCCcEEEEecCCCCCCCCCC-eEEEEECCCCCCccHHHHHHHHHHHHHHHHHCCCeEEEECCCCCChhHHHHHHHH
Confidence            344455 68999997643211111 124566532211111110 111211112234567888 99988 67765  3444


Q ss_pred             HHHcCC
Q 030091          156 LLNAGF  161 (183)
Q Consensus       156 L~~~G~  161 (183)
                      +...|.
T Consensus       106 m~~~~~  111 (165)
T 1wrm_A          106 MTVTDF  111 (165)
T ss_dssp             HHTSSC
T ss_pred             HHHcCC
Confidence            444564

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	183
d1tq1a_	119	c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senesc	2e-32
d1gmxa_	108	c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia	2e-14
d1yt8a1	136	c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase	1e-10
d1qxna_	137	c.46.1.3 (A:) Polysulfide-sulfur transferase (sulf	1e-10
d1uara1	143	c.46.1.2 (A:2-144) Sulfurtransferase {Thermus ther	2e-09
d1c25a_	161	c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId:	2e-09
d1e0ca2	136	c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacte	8e-09
d1e0ca1	135	c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter	3e-08
d1yt8a3	157	c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase	1e-07
d1hzma_	154	c.46.1.1 (A:) Erk2 binding domain of Mapk phosphat	2e-07
d1yt8a2	101	c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase P	3e-07
d1ymka1	174	c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens)	9e-07
d1okga2	139	c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtran	1e-06
d1yt8a4	130	c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase	6e-06
d2gwfa1	135	c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal h	7e-06
d1okga1	156	c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransf	2e-05
d1urha2	120	c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtran	3e-05
d1urha1	147	c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransf	3e-04
d1rhsa1	149	c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [Ta	5e-04
d1rhsa2	144	c.46.1.2 (A:150-293) Rhodanese {Cow (Bos taurus) [	0.001
d1uara2	141	c.46.1.2 (A:145-285) Sulfurtransferase {Thermus th	0.002
d1t3ka_	132	c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {	0.003

>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Thiosulfate sulfurtransferase/Senescence-associated protein
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  111 bits (277), Expect = 2e-32
 Identities = 77/117 (65%), Positives = 91/117 (77%), Gaps = 1/117 (0%)

Query: 67  EAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKF 126
           E   VP+SV V VAH+LL AGHRYLDVRTPEEFS GHA GAINVPYM R  SGM+KN  F
Sbjct: 2   EESRVPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDF 61

Query: 127 VEEVSTRFRKHDEIIG-CQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 182
           +E+VS+ F + D II  CQSG RS+ A TDLL+AGF G+ DI GG++AW +NGLPT+
Sbjct: 62  LEQVSSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTK 118

>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Sulfurtransferase GlpE
species: Escherichia coli [TaxId: 562]

 Score = 64.4 bits (156), Expect = 2e-14
 Identities = 30/110 (27%), Positives = 44/110 (40%), Gaps = 13/110 (11%)

Query: 74  SVPVRVAHELLQAGHRYL-DVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST 132
            + V  AH+ LQ     L D+R P+ F+ GHA  A ++                   +  
Sbjct: 6   CINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTNDT-----------LGAFMRD 54

Query: 133 RFRKHDEIIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 182
                  ++ C  G  S  AA  LL  G+  +  I GGF AW++   P E
Sbjct: 55  NDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQ-FPAE 103

>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 136

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 54.5 bits (130), Expect = 1e-10
 Identities = 29/120 (24%), Positives = 39/120 (32%), Gaps = 12/120 (10%)

Query: 66  LEAVGVPTSVPVRVAHELLQ--AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKN 123
           +EA     S+       LL   A    LD R  +E+      G I+VP    V       
Sbjct: 17  VEAERHTPSLAAEEVQALLDARAEAVILDARRFDEYQTMSIPGGISVPGAELVLRVAELA 76

Query: 124 LKFVEEVSTRFRKHDEIIGCQSGKRSMMAATDLLNAGFAG-ITDIAGGFAAWRQNGLPTE 182
                 V         I+ C    RS++    LLNAG    +  +  G   W   G   E
Sbjct: 77  PDPRTRV---------IVNCAGRTRSIIGTQSLLNAGIPNPVAALRNGTIGWTLAGQQLE 127

>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud)
species: Wolinella succinogenes [TaxId: 844]

 Score = 54.5 bits (130), Expect = 1e-10
 Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 8/106 (7%)

Query: 80  AHELLQAGHRY--LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKH 137
           A++LLQ       +DVR P+E  A         P +          L+ +   S    + 
Sbjct: 30  AYKLLQENPDITLIDVRDPDELKAMG------KPDVKNYKHMSRGKLEPLLAKSGLDPEK 83

Query: 138 DEIIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP 183
             ++ C++  R+ +A   L   GF  I +  GG   W + GLP+  
Sbjct: 84  PVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSLD 129

>d1uara1 c.46.1.2 (A:2-144) Sulfurtransferase {Thermus thermophilus [TaxId: 274]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

 Score = 51.8 bits (123), Expect = 2e-09
 Identities = 18/112 (16%), Positives = 34/112 (30%), Gaps = 8/112 (7%)

Query: 79  VAHELLQAGHRYLDVRTP-EEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-- 135
           V   L     R L+V      +  GH  GA  + +       + ++    EE +      
Sbjct: 14  VQEHLEDPKVRVLEVDEDILLYDTGHIPGAQKIDWQRDFWDPVVRDFISEEEFAKLMERL 73

Query: 136 ---KHDEIIG--CQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 182
                  ++    ++   +  A       G   +  + GG   W + G P  
Sbjct: 74  GISNDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGRQKWVEEGRPLT 125

>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (123), Expect = 2e-09
 Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 15/98 (15%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIGCQS-GKRS 149
           +D R P E+  GH  GA+N+     +   +   L     V T  ++   +  C+   +R 
Sbjct: 48  IDCRYPYEYEGGHIKGAVNLH----MEEEVEDFLLKKPIVPTDGKRVIVVFHCEFSSERG 103

Query: 150 MMAATDLLNA----------GFAGITDIAGGFAAWRQN 177
                 +              +  +  + GG+  +   
Sbjct: 104 PRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMK 141

>d1e0ca2 c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]} Length = 136

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 49.5 bits (117), Expect = 8e-09
 Identities = 26/135 (19%), Positives = 40/135 (29%), Gaps = 22/135 (16%)

Query: 70  GVPTSV-----PVRVAHELLQA----GHRYLDVRTPEEFSA--------GHATGAINVPY 112
           G P ++     P      LL           D R+P+E+          GH  GA+N  +
Sbjct: 1   GGPVALSLHDEPTASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEW 60

Query: 113 MYRVGSGMTKN---LKFVEEVSTRFRKHDEIIG-CQSGKRSMMAATDLLNAGFAGITDIA 168
              +                         EI+  CQ+  RS +        G+  +   A
Sbjct: 61  TAAMDPSRALRIRTDIAGRLEELGITPDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYA 120

Query: 169 GGFAAW-RQNGLPTE 182
           G +  W      P E
Sbjct: 121 GSWGEWGNHPDTPVE 135

>d1e0ca1 c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 48.2 bits (113), Expect = 3e-08
 Identities = 17/113 (15%), Positives = 30/113 (26%), Gaps = 9/113 (7%)

Query: 79  VAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYM---------YRVGSGMTKNLKFVEE 129
           +   L       +D+ +   ++ GH  GA  V              +     +      E
Sbjct: 16  LQARLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPREQLESLFGE 75

Query: 130 VSTRFRKHDEIIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 182
           +  R      +   + G  +      L   G      + GG  AW     P  
Sbjct: 76  LGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPLS 128

>d1yt8a3 c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 157

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 46.9 bits (110), Expect = 1e-07
 Identities = 23/107 (21%), Positives = 36/107 (33%), Gaps = 11/107 (10%)

Query: 76  PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR 135
           P  +A  L + G R LD      ++  H  GA  V       +                 
Sbjct: 9   PTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVLRSQLKQALER-----------LGT 57

Query: 136 KHDEIIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 182
               ++ C S   +  A  ++       +  + GG +AW   GLPTE
Sbjct: 58  AERYVLTCGSSLLARFAVAEVQALSGKPVFLLDGGTSAWVAAGLPTE 104

>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Erk2 binding domain of Mapk phosphatase mkp-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 2e-07
 Identities = 21/128 (16%), Positives = 41/128 (32%), Gaps = 22/128 (17%)

Query: 71  VPTSVPVRVAHELLQAGH---RYLDVRTPEEFSAGHATGAINVPY----MYRVGSGMTK- 122
           +  S  V   +E L+ G+     +D R  E + + H   AINV      + R+  G    
Sbjct: 14  MAISKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPV 73

Query: 123 -----NLKFVEEVSTRFRKHDEIIGCQSGKRS---------MMAATDLLNAGFAGITDIA 168
                  +  +  + R      ++  +S             +      L         + 
Sbjct: 74  RALFTRGEDRDRFTRRCGTDTVVLYDESSSDWNENTGGESLLGLLLKKLKDEGCRAFYLE 133

Query: 169 GGFAAWRQ 176
           GGF+ ++ 
Sbjct: 134 GGFSKFQA 141

>d1yt8a2 c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 101

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.6 bits (104), Expect = 3e-07
 Identities = 19/109 (17%), Positives = 35/109 (32%), Gaps = 14/109 (12%)

Query: 75  VPVRVAHELLQA-----GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEE 129
           + VR  H++  A         LDVR  + F+  H   A N+P          +  +    
Sbjct: 1   IAVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLSRLELEIHARVPRRDTP 60

Query: 130 VSTRFRKHDEIIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNG 178
           ++                  +         G++ +  + GG + WR  G
Sbjct: 61  ITVYDDGEGLAPVAAQRLHDL---------GYSDVALLDGGLSGWRNAG 100

>d1ymka1 c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 9e-07
 Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 12/97 (12%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIGCQSGKRSM 150
           +D R P E+  GH   A+N+P      S + K+   +   S   R         S +R  
Sbjct: 48  VDCRYPYEYEGGHIKTAVNLPLERDAESFLLKS--PIAPCSLDKRVILIFHCEFSSERGP 105

Query: 151 MAATDLLNA----------GFAGITDIAGGFAAWRQN 177
                +              +  +  + GG+  +   
Sbjct: 106 RMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQ 142

>d1okga2 c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]} Length = 139

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

 Score = 43.6 bits (102), Expect = 1e-06
 Identities = 21/116 (18%), Positives = 38/116 (32%), Gaps = 24/116 (20%)

Query: 91  LDVRTPEEFS-----------AGHATGAINVPYMYRVGS-GMTKNLKFVEEVSTRFRKHD 138
            D R+ + F+            GH  GA N+PY   + + G  K L+  EE+        
Sbjct: 16  TDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTRGDGKVLRSEEEIRHNIMTVV 75

Query: 139 E-----------IIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAW-RQNGLPTE 182
           +           +  C SG  + +    + + G        G ++ +      P  
Sbjct: 76  QGAGDAADLSSFVFSCGSGVTACINIALVHHLGLGHPYLYCGSWSEYSGLFRPPIM 131

>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 130

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 41.9 bits (97), Expect = 6e-06
 Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 14/114 (12%)

Query: 74  SVPVRVAHELLQAGHR---YLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV 130
            + +    +      R    LDVRTPEE+ AGH  G+ + P                 + 
Sbjct: 24  RLDLAGLAQWQDEHDRTTYLLDVRTPEEYEAGHLPGSRSTPGGQL---------VQETDH 74

Query: 131 STRFRKHDEIIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWR-QNGLPTEP 183
               R    ++    G R+ M+A+ L   G+  +  + G   A   + G  + P
Sbjct: 75  VASVRGARLVLVDDDGVRANMSASWLAQMGW-QVAVLDGLSEADFSERGAWSAP 127

>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Ubiquitin carboxyl-terminal hydrolase 8, USP8
domain: Ubiquitin carboxyl-terminal hydrolase 8, USP8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 7e-06
 Identities = 9/126 (7%), Positives = 35/126 (27%), Gaps = 22/126 (17%)

Query: 74  SVPVRVAHELLQAGHRY---LDVRTPEEFSAGHATGAINVPY--MYRVGSGMTKNLKFVE 128
           ++  +  + ++   +     +D R  +++       +++VP   +    +         +
Sbjct: 2   AITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPD 61

Query: 129 EVSTRFRKHDE----IIGCQSGKRSMMAATDLLNA-------------GFAGITDIAGGF 171
           +    ++K       ++         +     L +                    + GG+
Sbjct: 62  DSKDTWKKRGNVEYVVLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGY 121

Query: 172 AAWRQN 177
             W   
Sbjct: 122 ENWLLC 127

>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

 Score = 40.5 bits (94), Expect = 2e-05
 Identities = 19/114 (16%), Positives = 28/114 (24%), Gaps = 20/114 (17%)

Query: 89  RYLDVRT--------PEEFSAGHATGAINV--------PYMYRVGSGMTKNLKFVEEVST 132
           R +D R           +++  H   AI                            +   
Sbjct: 23  RIVDCRYSLKIKDHGSIQYAKEHVKSAIRADVDTNLSKLVPTSTARHPLPPCAEFIDWCM 82

Query: 133 RFRKHDE----IIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 182
                 E        + G         +LN+  A    I GGF A +  GL  E
Sbjct: 83  ANGMAGELPVLCYDDECGAMGGCRLWWMLNSLGADAYVINGGFQACKAAGLEME 136

>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

 Score = 39.6 bits (91), Expect = 3e-05
 Identities = 22/116 (18%), Positives = 35/116 (30%), Gaps = 18/116 (15%)

Query: 77  VRVAHELLQAGHRY----LDVRTPEEFSA-------GHATGAI-NVPYMYRVGSGMTKNL 124
           V    ++L A H      +D R    F+A       G   G I     +          L
Sbjct: 5   VVKVTDVLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGEL 64

Query: 125 KFVEEVSTRFRKH------DEIIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAW 174
           K  +E+   F           I+ C SG  + +    L       +    G ++ W
Sbjct: 65  KTTDELDAIFFGRGVSYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEW 120

>d1urha1 c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]} Length = 147

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

 Score = 37.2 bits (85), Expect = 3e-04
 Identities = 21/114 (18%), Positives = 36/114 (31%), Gaps = 21/114 (18%)

Query: 89  RYLDVRTP----------EEFSAGHATGAINVPYM--YRVGSGMTKNLKFVEEVSTRFRK 136
           + +D R            +E+  GH  GA+           S +   L   E  +   R+
Sbjct: 20  QIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDHTSPLPHMLPRPETFAVAMRE 79

Query: 137 H-----DEIIGCQSGKRSMMAATDLLNAGFAGITDIA---GGFAAWRQNGLPTE 182
                   +I    G     A          G+  ++   GG A W+++ L  E
Sbjct: 80  LGVNQDKHLIVYDEG-NLFSAPRAWWMLRTFGVEKVSILGGGLAGWQRDDLLLE 132

>d1rhsa1 c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [TaxId: 9913]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.4 bits (83), Expect = 5e-04
 Identities = 21/126 (16%), Positives = 31/126 (24%), Gaps = 24/126 (19%)

Query: 81  HELLQAGH-----RYLDVRTP--------EEFSAGHATGAINVPYM--YRVGSGMTKNLK 125
            E ++AG      R LD            +E+   H  GA            S     L 
Sbjct: 16  AESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKASPYEVMLP 75

Query: 126 FVEEVSTRFRKHD------EIIGCQSGKRSMMAATDLLNAGFAGITDIA---GGFAAWRQ 176
                +              ++       S  A          G   ++   GGF  W +
Sbjct: 76  SEAGFADYVGSLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLK 135

Query: 177 NGLPTE 182
            G P  
Sbjct: 136 EGHPVT 141

>d1rhsa2 c.46.1.2 (A:150-293) Rhodanese {Cow (Bos taurus) [TaxId: 9913]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.6 bits (81), Expect = 0.001
 Identities = 13/121 (10%), Positives = 24/121 (19%), Gaps = 16/121 (13%)

Query: 79  VAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHD 138
           V   L     + +D R    +                +   +              +  +
Sbjct: 18  VLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGFEKSPE 77

Query: 139 E----------------IIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 182
           E                I  C+ G  +   A      G   +    G +  W     P  
Sbjct: 78  ELRAMFEAKKVDLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPPET 137

Query: 183 P 183
            
Sbjct: 138 W 138

>d1uara2 c.46.1.2 (A:145-285) Sulfurtransferase {Thermus thermophilus [TaxId: 274]} Length = 141

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

 Score = 34.8 bits (79), Expect = 0.002
 Identities = 21/116 (18%), Positives = 35/116 (30%), Gaps = 26/116 (22%)

Query: 91  LDVRTPEEFS----------------AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF 134
           +DVR+P+E+                 AGH  GA N    +          K  EE+   +
Sbjct: 24  VDVRSPQEYRGELTHMPDYPQEGALRAGHIPGAKN--IPWAKAVNPDGTFKSAEELRALY 81

Query: 135 RKH----DEIIGCQSGKRSMMAATDLLNAGFAGITDIA---GGFAAW-RQNGLPTE 182
                  D+ I          + +  +     G   +    G +  W    G+P  
Sbjct: 82  EPLGITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSWTEWGNLVGVPIA 137

>d1t3ka_ c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Dual specificity phosphatase Cdc25
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 34.3 bits (77), Expect = 0.003
 Identities = 17/100 (17%), Positives = 26/100 (26%), Gaps = 14/100 (14%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIGCQSGKRS- 149
           +DVR  E    GH      +       SG   +       + + +         S  R  
Sbjct: 27  IDVRDEERNYDGH------IAGSLHYASGSFDDKISHLVQNVKDKDTLVFHSALSQVRGP 80

Query: 150 -------MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE 182
                          + G   I  +  GF  W  +G P  
Sbjct: 81  TCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVC 120

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	183
d1tq1a_	119	Thiosulfate sulfurtransferase/Senescence-associate	99.96
d1gmxa_	108	Sulfurtransferase GlpE {Escherichia coli [TaxId: 5	99.93
d1e0ca2	136	Sulfurtransferase {Azotobacter vinelandii [TaxId:	99.93
d1yt8a1	136	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.93
d1yt8a3	157	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.92
d1yt8a2	101	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.91
d1qxna_	137	Polysulfide-sulfur transferase (sulfide dehydrogen	99.9
d1urha1	147	3-mercaptopyruvate sulfurtransferase {Escherichia	99.9
d1uara2	141	Sulfurtransferase {Thermus thermophilus [TaxId: 27	99.9
d1rhsa2	144	Rhodanese {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1rhsa1	149	Rhodanese {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1e0ca1	135	Sulfurtransferase {Azotobacter vinelandii [TaxId:	99.9
d1uara1	143	Sulfurtransferase {Thermus thermophilus [TaxId: 27	99.9
d1yt8a4	130	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.88
d1urha2	120	3-mercaptopyruvate sulfurtransferase {Escherichia	99.88
d1okga2	139	3-mercaptopyruvate sulfurtransferase {Leishmania m	99.86
d1t3ka_	132	Dual specificity phosphatase Cdc25 {Thale cress (A	99.86
d1okga1	156	3-mercaptopyruvate sulfurtransferase {Leishmania m	99.85
d1c25a_	161	CDC25a {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1ymka1	174	CDC25b {Human (Homo sapiens) [TaxId: 9606]}	99.78
d2gwfa1	135	Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Hum	99.7
d1hzma_	154	Erk2 binding domain of Mapk phosphatase mkp-3 {Hum	99.64
d1xria_	151	Putative phosphatase At1g05000 {Thale cress (Arabi	88.43
d1c4oa2	174	Nucleotide excision repair enzyme UvrB {Thermus th	85.59
d1fpza_	176	Kinase associated phosphatase (kap) {Human (Homo s	84.24
d1t5ia_	168	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	83.01
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	81.08
d1fuka_	162	Initiation factor 4a {Baker's yeast (Saccharomyces	80.77

>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Thiosulfate sulfurtransferase/Senescence-associated protein
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.96  E-value=1.7e-29  Score=176.37  Aligned_cols=114  Identities=68%  Similarity=1.120  Sum_probs=103.5

Q ss_pred             CCCCccccHHHHHHHHhCCCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCCh
Q 030091           69 VGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGK  147 (183)
Q Consensus        69 ~~~~~~i~~~~~~~~~~~~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~  147 (183)
                      ...+..+++.++.++++++.+|||||++.||..||||||+|+|+............+++......++++++|| ||++|.
T Consensus         4 ~~~p~~i~~~~a~~l~~~g~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~C~~G~   83 (119)
T d1tq1a_           4 SRVPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFLEQVSSHFGQSDNIIVGCQSGG   83 (119)
T ss_dssp             SCCCEEEEHHHHHHHHHHTCCEEEESCHHHHHHCCBTTBEECCSCCCSTTTCCCTTTHHHHHTTTCCTTSSEEEEESSCS
T ss_pred             ccCCCccCHHHHHHHHHCcCEEEECCCHHHHHcCCCCCccchhhcccccccccccHHHHHHHHHhcCCCcEEEEEcCCcC
Confidence            3456789999999999989999999999999999999999999876655666677788888888899999999 999999


Q ss_pred             HHHHHHHHHHHcCCCCeeEecccHHHHHhCCCCCC
Q 030091          148 RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       148 ~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~  182 (183)
                      ||..++..|.+.||+||++|+||+.+|.++|+|++
T Consensus        84 rs~~a~~~L~~~G~~nv~~l~GG~~~W~~~g~P~e  118 (119)
T d1tq1a_          84 RSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTK  118 (119)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEECCHHHHHHHTCCCC
T ss_pred             cHHHHHHHHHhcccCCeEEecChHHHHHHCCCCcc
Confidence            99999999999999999999999999999999997

>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Sulfurtransferase GlpE
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.4e-26  Score=158.81  Aligned_cols=98  Identities=30%  Similarity=0.493  Sum_probs=88.6

Q ss_pred             CccccHHHHHHHHhCC-CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCChHH
Q 030091           72 PTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGKRS  149 (183)
Q Consensus        72 ~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~~s  149 (183)
                      .+.|+++++.++++++ ++|||||++.||..||||||+|+|.            +.+......++++++|| ||.+|.+|
T Consensus         4 ~~~Is~~e~~~~l~~~~~~liDvR~~~e~~~ghI~gA~~ip~------------~~l~~~~~~~~~~~~ivv~c~~g~rs   71 (108)
T d1gmxa_           4 FECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTN------------DTLGAFMRDNDFDTPVMVMCYHGNSS   71 (108)
T ss_dssp             CEEECHHHHHHHHHTTCCEEEECSCHHHHHHCEETTCEECCH------------HHHHHHHHHSCTTSCEEEECSSSSHH
T ss_pred             CCEeCHHHHHHHHHCCCeEEEECCCHHHHHhcCCCCcccccc------------hhHHHHhhhccccCcccccCCCChHH
Confidence            3569999999998764 9999999999999999999999998            56677777899999999 99999999


Q ss_pred             HHHHHHHHHcCCCCeeEecccHHHHHhCCCCCC
Q 030091          150 MMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       150 ~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~  182 (183)
                      ..++..|.+.||+||++|+||+.+|.++ +|++
T Consensus        72 ~~~a~~L~~~G~~~v~~l~GG~~~W~~~-~p~e  103 (108)
T d1gmxa_          72 KGAAQYLLQQGYDVVYSIDGGFEAWQRQ-FPAE  103 (108)
T ss_dssp             HHHHHHHHHHTCSSEEEETTHHHHHHHH-CGGG
T ss_pred             HHHHHHHHHcCCCCEEEEcChHHHHHHc-CCCc
Confidence            9999999999999999999999999754 7765

>d1e0ca2 c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.93  E-value=3.8e-26  Score=162.73  Aligned_cols=111  Identities=22%  Similarity=0.343  Sum_probs=93.0

Q ss_pred             CccccHHHHHHHHhC-CCEEEEcCCHHhHh--------cCCCCCcEEeccccccC-CCCCCCHHHHHHHhhc--CCCCCe
Q 030091           72 PTSVPVRVAHELLQA-GHRYLDVRTPEEFS--------AGHATGAINVPYMYRVG-SGMTKNLKFVEEVSTR--FRKHDE  139 (183)
Q Consensus        72 ~~~i~~~~~~~~~~~-~~~lIDvR~~~e~~--------~ghIpgAi~ip~~~~~~-~~~~~~~~~~~~~~~~--i~~~~~  139 (183)
                      ...++.+++.+.+++ +.+|||+|++.||.        .||||||+|+|+..... .+.+...+.+...+..  ++++++
T Consensus        11 ~~~~s~d~l~~~l~~~~~~liD~R~~~ey~G~~~~~~~~GhIPGAinip~~~~~~~~~~~~~~~~l~~~~~~~gi~~~~~   90 (136)
T d1e0ca2          11 EPTASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTAAMDPSRALRIRTDIAGRLEELGITPDKE   90 (136)
T ss_dssp             TTBCCHHHHHHHTTCTTEEEEECSCHHHHTTSSCCSSSCSBCTTCEECCGGGGEEGGGTTEECTTHHHHHHHTTCCTTSE
T ss_pred             CceEcHHHHHHhhCCCCeEEEECcChHHhcccccccccCCcchhHhhhhhhhhhccccccchhHHHhhhhhhcccCCCCc
Confidence            346899999999876 48999999999996        79999999999865442 3444445556665554  688999


Q ss_pred             EE-EeCCChHHHHHHHHHHHcCCCCeeEecccHHHHHh-CCCCCC
Q 030091          140 II-GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ-NGLPTE  182 (183)
Q Consensus       140 iv-~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~-~g~pv~  182 (183)
                      || ||++|.+|..+++.|+.+||+||++|+|||.+|.+ .++|||
T Consensus        91 vV~yC~~G~~a~~~~~~l~~~G~~~v~~ydGg~~eW~~~~~~PvE  135 (136)
T d1e0ca2          91 IVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWGEWGNHPDTPVE  135 (136)
T ss_dssp             EEEECSSSSHHHHHHHHHHHTTCSCEEECSSHHHHHTTCTTCCCB
T ss_pred             eEEeCCChHHHHHHHHHHHHcCCCCcEEecCCHHHHhcCCCCCCc
Confidence            99 99999999999999999999999999999999976 599987

>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=1.3e-25  Score=159.87  Aligned_cols=101  Identities=25%  Similarity=0.417  Sum_probs=86.7

Q ss_pred             CCccccHHHHHHHHhCC--CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcC--CCCCeEE-EeCC
Q 030091           71 VPTSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEII-GCQS  145 (183)
Q Consensus        71 ~~~~i~~~~~~~~~~~~--~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i--~~~~~iv-~C~~  145 (183)
                      ..+.|++++++++++.+  ++|||||++.||..||||||+|+|..           ++ ...+..+  +++++|| ||.+
T Consensus        22 ~~~~Is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpGAi~ip~~-----------~l-~~~~~~l~~~~~~~iV~~C~~   89 (136)
T d1yt8a1          22 HTPSLAAEEVQALLDARAEAVILDARRFDEYQTMSIPGGISVPGA-----------EL-VLRVAELAPDPRTRVIVNCAG   89 (136)
T ss_dssp             CCCEECHHHHHHHHHTTCSEEEEECSCHHHHHHSBCTTCEECCGG-----------GH-HHHHHHHCCSTTSEEEEECSS
T ss_pred             CCCccCHHHHHHHHhcCCCcEEEEcCChhhccceecCCchhhhhh-----------HH-HHHhhcccccccceEEEEcCC
Confidence            34579999999998654  79999999999999999999999984           33 3333332  4677899 9999


Q ss_pred             ChHHHHHHHHHHHcCCCC-eeEecccHHHHHhCCCCCCC
Q 030091          146 GKRSMMAATDLLNAGFAG-ITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       146 g~~s~~aa~~L~~~G~~~-v~~l~GG~~~W~~~g~pv~~  183 (183)
                      |.+|..++..|+++||+| |++|.||+.+|..+|+|+++
T Consensus        90 g~rs~~aa~~L~~~G~~~~V~~L~GG~~~W~~~G~pve~  128 (136)
T d1yt8a1          90 RTRSIIGTQSLLNAGIPNPVAALRNGTIGWTLAGQQLEH  128 (136)
T ss_dssp             SHHHHHHHHHHHHTTCSSCEEEETTHHHHHHHTTCCCBC
T ss_pred             CCchHHHHHHHHHcCCCceEEEeCCcHHHHHHCCCCcee
Confidence            999999999999999987 99999999999999999974

>d1yt8a3 c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=1.5e-25  Score=163.27  Aligned_cols=102  Identities=21%  Similarity=0.304  Sum_probs=91.3

Q ss_pred             CCCccccHHHHHHHHhCC-CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCCh
Q 030091           70 GVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSGK  147 (183)
Q Consensus        70 ~~~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g~  147 (183)
                      +.+..|+++++.++++++ .+|||||+..||..||||||+|+|..            .+......++++++|| ||.+|.
T Consensus         2 P~~~~Is~~el~~~l~~~~~~ivDvR~~~e~~~ghIpga~~~~~~------------~~~~~~~~~~~~~~vv~~c~~g~   69 (157)
T d1yt8a3           2 PRADTIDPTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVLRS------------QLKQALERLGTAERYVLTCGSSL   69 (157)
T ss_dssp             CCCCEECHHHHHHHTTSTTEEEEECSCHHHHHHCBCTTCEECCGG------------GHHHHHHHHCCCSEEEEECSSSH
T ss_pred             CCCCEECHHHHHHHHhCCCeEEEEeCCHHHHhhcccccceecccc------------cccccccccccCcceeeccCCcc
Confidence            345679999999999765 89999999999999999999999993            3455556678899999 999999


Q ss_pred             HHHHHHHHHHHcCCCCeeEecccHHHHHhCCCCCCC
Q 030091          148 RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       148 ~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      +|..++..|...||++|++|.||+.+|.++|+|+++
T Consensus        70 rs~~~a~~l~~~G~~~v~~L~GG~~~W~~aGlp~~~  105 (157)
T d1yt8a3          70 LARFAVAEVQALSGKPVFLLDGGTSAWVAAGLPTED  105 (157)
T ss_dssp             HHHHHHHHHHHHHCSCEEEETTHHHHHHHTTCCCBC
T ss_pred             hHHHHHHHHhcccCceEEEecCCHHHHhhCCCCCcC
Confidence            999999999999999999999999999999999874

>d1yt8a2 c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=2.1e-24  Score=145.81  Aligned_cols=94  Identities=26%  Similarity=0.389  Sum_probs=78.9

Q ss_pred             cccHHHHHHHHhC--CCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhc-CCCCCeEE-EeCCChHH
Q 030091           74 SVPVRVAHELLQA--GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR-FRKHDEII-GCQSGKRS  149 (183)
Q Consensus        74 ~i~~~~~~~~~~~--~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~-i~~~~~iv-~C~~g~~s  149 (183)
                      ..+.+++++.+.+  +.+|||||++.||..||||||+|+|..           .+....... .+++++|| ||.+|.+|
T Consensus         3 v~S~~~l~~~l~~~~~~~liDvR~~~e~~~ghIpgAi~~~~~-----------~~~~~~~~~~~~~~~~vv~~~~~g~~s   71 (101)
T d1yt8a2           3 VRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLS-----------RLELEIHARVPRRDTPITVYDDGEGLA   71 (101)
T ss_dssp             EECHHHHHHHHHHTCCBEEEECSCHHHHTTSBCTTCEECCGG-----------GHHHHHHHHSCCTTSCEEEECSSSSHH
T ss_pred             cCcHHHHHHHHHCCCCeEEEECCCHHHHHhccCCCccccccc-----------chhhhhhhcccccCceeeeccchhhhH
Confidence            4677888887643  489999999999999999999999984           333333222 34667888 99999999


Q ss_pred             HHHHHHHHHcCCCCeeEecccHHHHHhCC
Q 030091          150 MMAATDLLNAGFAGITDIAGGFAAWRQNG  178 (183)
Q Consensus       150 ~~aa~~L~~~G~~~v~~l~GG~~~W~~~g  178 (183)
                      ..++..|.++||+||++|+||+.+|.++|
T Consensus        72 ~~~~~~l~~~G~~nV~~l~GG~~~W~~aG  100 (101)
T d1yt8a2          72 PVAAQRLHDLGYSDVALLDGGLSGWRNAG  100 (101)
T ss_dssp             HHHHHHHHHTTCSSEEEETTHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCcEEEeCChHHHHHHCc
Confidence            99999999999999999999999999987

>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud)
species: Wolinella succinogenes [TaxId: 844]

Probab=99.90  E-value=1.8e-24  Score=154.13  Aligned_cols=100  Identities=24%  Similarity=0.392  Sum_probs=85.9

Q ss_pred             CCccccHHHHHHHHhC--CCEEEEcCCHHhHhcCC---CCCcEEeccccccCCCCCCCHHHHHHHh--hcCCCCCeEE-E
Q 030091           71 VPTSVPVRVAHELLQA--GHRYLDVRTPEEFSAGH---ATGAINVPYMYRVGSGMTKNLKFVEEVS--TRFRKHDEII-G  142 (183)
Q Consensus        71 ~~~~i~~~~~~~~~~~--~~~lIDvR~~~e~~~gh---IpgAi~ip~~~~~~~~~~~~~~~~~~~~--~~i~~~~~iv-~  142 (183)
                      ....|+++++.+++.+  +++|||||++.||..+|   |+|++|+|..            .+...+  ..++++++|| |
T Consensus        21 ~~~~Isp~e~~~ll~~~~~~~lIDvR~~~E~~~~hip~i~~a~~ip~~------------~l~~~~~~~~~~~~~~ivvy   88 (137)
T d1qxna_          21 DMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRG------------KLEPLLAKSGLDPEKPVVVF   88 (137)
T ss_dssp             SSEEECHHHHHHHHHHCTTSEEEECCCHHHHHHTCEECCSSEEECCTT------------TSHHHHHHHCCCTTSCEEEE
T ss_pred             cCCEEcHHHHHHHHHcCcCEEEEECCcHHHHHHhccccccccccCCcc------------cccccccccccCcccceeee
Confidence            3457999999999864  49999999999999998   6778999984            122222  3478889999 9


Q ss_pred             eCCChHHHHHHHHHHHcCCCCeeEecccHHHHHhCCCCCC
Q 030091          143 CQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       143 C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~  182 (183)
                      |.+|.||..++..|.++||+||++|+||+.+|.++|+|++
T Consensus        89 C~~G~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~P~~  128 (137)
T d1qxna_          89 CKTAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSL  128 (137)
T ss_dssp             CCSSSCHHHHHHHHHHHTCSCEEEESSCHHHHHHTTCCEE
T ss_pred             ecccchHHHHHHHHHHcCCCcEEEecCHHHHHHHcCCCCC
Confidence            9999999999999999999999999999999999999985

>d1urha1 c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=3e-24  Score=154.67  Aligned_cols=110  Identities=18%  Similarity=0.192  Sum_probs=92.5

Q ss_pred             cccHHHHHHHHhC-CCEEEEcC----------CHHhHhcCCCCCcEEeccccccC-----CCCCCCHHHHHHHhhc--CC
Q 030091           74 SVPVRVAHELLQA-GHRYLDVR----------TPEEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--FR  135 (183)
Q Consensus        74 ~i~~~~~~~~~~~-~~~lIDvR----------~~~e~~~ghIpgAi~ip~~~~~~-----~~~~~~~~~~~~~~~~--i~  135 (183)
                      .|+++++.+.+++ +++|||+|          ..++|..||||||+|+++.....     .+++.+.+.+...+..  ++
T Consensus         4 lVs~~wL~~~L~~~~v~iiD~r~~~~~~~~~~~~~~y~~gHIPGAi~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~Gi~   83 (147)
T d1urha1           4 FVGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDHTSPLPHMLPRPETFAVAMRELGVN   83 (147)
T ss_dssp             EECHHHHHTTTTCTTEEEEECCCCCSSCTTCCHHHHHHHSBCTTCEECCGGGGSCSSSSSSSCCCCHHHHHHHHHHTTCC
T ss_pred             cCcHHHHHHHhCCCCeEEEEeeCCCCCccCccHHHHHHhCCccccEEeehhhhccccccccccCCCHHHHHHHHHHhCcC
Confidence            4789999998875 59999999          35689999999999999854331     2456677888887765  67


Q ss_pred             CCCeEE-EeCC-ChHHHHHHHHHHHcCCCCeeEecccHHHHHhCCCCCCC
Q 030091          136 KHDEII-GCQS-GKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       136 ~~~~iv-~C~~-g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      ++++|| ||.+ +..|.++++.|+.+||+||++|+||+.+|.++|+|+++
T Consensus        84 ~~~~vVvY~~~~~~~A~r~~~~L~~~G~~~V~vLdGG~~~W~~~g~pv~~  133 (147)
T d1urha1          84 QDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLAGWQRDDLLLEE  133 (147)
T ss_dssp             TTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHHHHHHHTTCCCBB
T ss_pred             CCCeEEEEeCCCcccchhHHHHHHhhcccceEEeCChHHHHHHcCCCccC
Confidence            889999 9975 56788999999999999999999999999999999974

>d1uara2 c.46.1.2 (A:145-285) Sulfurtransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=8.3e-24  Score=151.29  Aligned_cols=99  Identities=26%  Similarity=0.503  Sum_probs=85.9

Q ss_pred             hCCCEEEEcCCHHhHh----------------cCCCCCcEEecccccc-CCCCCCCHHHHHHHhhc--CCCCCeEE-EeC
Q 030091           85 QAGHRYLDVRTPEEFS----------------AGHATGAINVPYMYRV-GSGMTKNLKFVEEVSTR--FRKHDEII-GCQ  144 (183)
Q Consensus        85 ~~~~~lIDvR~~~e~~----------------~ghIpgAi~ip~~~~~-~~~~~~~~~~~~~~~~~--i~~~~~iv-~C~  144 (183)
                      +++.+|||+|+++||.                .||||||+|+|+.... ..+++.+.+.++..+..  ++++++|| ||+
T Consensus        18 ~~~~~lvD~R~~~ey~G~~~~~~~~~~~~~~r~GhIpgA~nlp~~~~~~~~~~~~~~~~~~~~~~~~gi~~d~~vV~yC~   97 (141)
T d1uara2          18 EGKGALVDVRSPQEYRGELTHMPDYPQEGALRAGHIPGAKNIPWAKAVNPDGTFKSAEELRALYEPLGITKDKDIVVYCR   97 (141)
T ss_dssp             TTSEEEEECSCHHHHHTCC--------CCCSCCSBCTTCEECCGGGGBCTTSCBCCHHHHHHHHGGGTCCTTSEEEEECS
T ss_pred             CCCcEEEeCCCHHHcCCccCcccccCcccceeeeEeCCccccccccccccccccccHHHHHHHHHHhCCCCCCeEEEEec
Confidence            3458999999999996                7999999999996654 45677888888888765  68899999 999


Q ss_pred             CChHHHHHHHHHHH-cCCCCeeEecccHHHHHh-CCCCCCC
Q 030091          145 SGKRSMMAATDLLN-AGFAGITDIAGGFAAWRQ-NGLPTEP  183 (183)
Q Consensus       145 ~g~~s~~aa~~L~~-~G~~~v~~l~GG~~~W~~-~g~pv~~  183 (183)
                      +|.+|..+++.|.. +||+||++|+|||.+|.+ .++||++
T Consensus        98 ~G~~As~~~~~l~~~~G~~~v~~ydGs~~eW~~~~~~Pv~~  138 (141)
T d1uara2          98 IAERSSHSWFVLKYLLGYPHVKNYDGSWTEWGNLVGVPIAK  138 (141)
T ss_dssp             SHHHHHHHHHHHHTTSCCSCEEEESSHHHHHTTSTTCCCBC
T ss_pred             CcchHHHHHHHHHHHcCCCCeeEeCCcHHHHhcCCCCCccc
Confidence            99999999999986 799999999999999976 6999974

>d1rhsa2 c.46.1.2 (A:150-293) Rhodanese {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=5e-24  Score=152.97  Aligned_cols=106  Identities=18%  Similarity=0.320  Sum_probs=91.7

Q ss_pred             cccHHHHHHHHhC-CCEEEEcCCHHhHh------------cCCCCCcEEecccccc-CCCCCCCHHHHHHHhhc--CCCC
Q 030091           74 SVPVRVAHELLQA-GHRYLDVRTPEEFS------------AGHATGAINVPYMYRV-GSGMTKNLKFVEEVSTR--FRKH  137 (183)
Q Consensus        74 ~i~~~~~~~~~~~-~~~lIDvR~~~e~~------------~ghIpgAi~ip~~~~~-~~~~~~~~~~~~~~~~~--i~~~  137 (183)
                      .++.+++.+.+++ +++|||+|+++||.            .||||||+|+|+.... ..+.+.+++.+..++..  ++++
T Consensus        12 i~~~~ev~~~l~~~~~~iiD~R~~~ef~G~~~~~~~~~~~~GhIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~~~gi~~~   91 (144)
T d1rhsa2          12 LKTYEQVLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGFEKSPEELRAMFEAKKVDLT   91 (144)
T ss_dssp             EECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCSSSSSCCCCEETTCEECCGGGGBCTTSCBCCHHHHHHHHHHTTCCTT
T ss_pred             eecHHHHHHHhcCCCcEEEECCCCHHHcCCCCCCccccceeeehhhhhhcchhhhhhhhcccCCHHHHHHHHHHcCCCCC
Confidence            5688888777765 59999999999995            6999999999996554 45567788888888765  7888


Q ss_pred             CeEE-EeCCChHHHHHHHHHHHcCCCCeeEecccHHHHHhCCC
Q 030091          138 DEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGL  179 (183)
Q Consensus       138 ~~iv-~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~  179 (183)
                      ++|| ||++|.+|..+++.|..+||++|++|+|||.+|...+.
T Consensus        92 ~~iI~yC~sG~~A~~~~~~l~~lG~~~v~~YdGsw~eW~~~~~  134 (144)
T d1rhsa2          92 KPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAP  134 (144)
T ss_dssp             SCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHHHHHHHSC
T ss_pred             CCEEEEecccchHHHHHHHHHHcCCCCCEEeCCCHHHHhhcCC
Confidence            9999 99999999999999999999999999999999987654

>d1rhsa1 c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=1.2e-23  Score=151.77  Aligned_cols=112  Identities=17%  Similarity=0.154  Sum_probs=93.2

Q ss_pred             CccccHHHHHHHHhC-----CCEEEEcC--------CHHhHhcCCCCCcEEecccccc-----CCCCCCCHHHHHHHhhc
Q 030091           72 PTSVPVRVAHELLQA-----GHRYLDVR--------TPEEFSAGHATGAINVPYMYRV-----GSGMTKNLKFVEEVSTR  133 (183)
Q Consensus        72 ~~~i~~~~~~~~~~~-----~~~lIDvR--------~~~e~~~ghIpgAi~ip~~~~~-----~~~~~~~~~~~~~~~~~  133 (183)
                      ...|+++++.+.++.     +++|||+|        ..++|..||||||+|+++....     ..+.+...+.+...+..
T Consensus         7 ~~lVs~~wL~~~L~~~~~~~~~~IiD~r~~~~~~~~~~~~y~~gHIPGAv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   86 (149)
T d1rhsa1           7 RALVSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKASPYEVMLPSEAGFADYVGS   86 (149)
T ss_dssp             CSEECHHHHHHHHHTTCCBTTEEEEECCCCCTTSCCHHHHHHHSBCTTCEECCTTTSSCTTSSSSSCCCCHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHhccCCCCCEEEEEecCcCCCCcchHHHHHHhcccCceeccHHhhcccccchhhhhhhhHHHHHHHhh
Confidence            356899999999864     48999999        4679999999999999986443     23456677777777665


Q ss_pred             --CCCCCeEE-EeCC---ChHHHHHHHHHHHcCCCCeeEecccHHHHHhCCCCCCC
Q 030091          134 --FRKHDEII-GCQS---GKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       134 --i~~~~~iv-~C~~---g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                        ++++++|| ||.+   +..+.++++.|+.+||+||++|+||+.+|.++|+|+++
T Consensus        87 ~Gi~~~~~vVvy~~~~~~~~~a~r~~w~L~~~G~~~V~vLdGG~~~W~~~G~pv~~  142 (149)
T d1rhsa1          87 LGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHPVTS  142 (149)
T ss_dssp             TTCCTTCEEEEECCCSSSCSSHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBC
T ss_pred             hhccCCceeEEeeccCCcchhhhHHHHHHHHcCCCceEEeCCcHHHHHHCcCcccC
Confidence              67888999 9864   46788999999999999999999999999999999974

>d1e0ca1 c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.90  E-value=1.7e-23  Score=147.92  Aligned_cols=111  Identities=17%  Similarity=0.136  Sum_probs=87.1

Q ss_pred             ccccHHHHHHHHhC-CCEEEEcCCHHhHhcCCCCCcEEeccccccCC-----CCCCCHHHHHHHhh--cCCCCCeEE-Ee
Q 030091           73 TSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGS-----GMTKNLKFVEEVST--RFRKHDEII-GC  143 (183)
Q Consensus        73 ~~i~~~~~~~~~~~-~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~-----~~~~~~~~~~~~~~--~i~~~~~iv-~C  143 (183)
                      ..|+++++++++++ +++|||||+++||..||||||+|+|+......     ..............  ....+..++ ||
T Consensus         9 ~lIs~~el~~~l~~~~~viiDvR~~~ey~~gHIpgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   88 (135)
T d1e0ca1           9 LVIEPADLQARLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPREQLESLFGELGHRPEAVYVVYD   88 (135)
T ss_dssp             SEECHHHHHTTTTCTTEEEEECSCHHHHHHCBSTTCEECCGGGGSCCCTTCTTSCCCHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred             cEeeHHHHHHHhcCCCeEEEECCCHHHHhcccCccccccchhhhhhcccccchhhcchhhhhhhhccccccccccccccc
Confidence            46899999999875 48999999999999999999999998654422     22333444443332  244555666 65


Q ss_pred             C-CChHHHHHHHHHHHcCCCCeeEecccHHHHHhCCCCCCC
Q 030091          144 Q-SGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       144 ~-~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      . ++.++..+++.|+.+||+||++|+||+.+|.++|+|+++
T Consensus        89 ~~~~~~~~~~~~~l~~~G~~~V~~l~GG~~~W~~~g~p~~~  129 (135)
T d1e0ca1          89 DEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPLSR  129 (135)
T ss_dssp             SSSSHHHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBC
T ss_pred             cccCccchhhHHHHHhccCCCEEEecChHHHHHHCCCCCCC
Confidence            5 678888999999999999999999999999999999974

>d1uara1 c.46.1.2 (A:2-144) Sulfurtransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=1.9e-24  Score=155.11  Aligned_cols=111  Identities=16%  Similarity=0.192  Sum_probs=92.9

Q ss_pred             ccccHHHHHHHHhC-CCEEEEcCC-HHhHhcCCCCCcEEecccccc---CCCCCCCHHHHHHHhhc--CCCCCeEE-EeC
Q 030091           73 TSVPVRVAHELLQA-GHRYLDVRT-PEEFSAGHATGAINVPYMYRV---GSGMTKNLKFVEEVSTR--FRKHDEII-GCQ  144 (183)
Q Consensus        73 ~~i~~~~~~~~~~~-~~~lIDvR~-~~e~~~ghIpgAi~ip~~~~~---~~~~~~~~~~~~~~~~~--i~~~~~iv-~C~  144 (183)
                      ..|+++++++.+++ +++|||+|. ..+|..||||||+|+++....   ...++...+.++..+..  ++++++|| ||.
T Consensus         7 ~lVs~~~l~~~l~~~~v~iiDvr~~~~~y~~gHIPgAi~~~~~~~~~~~~~~~l~~~~~l~~~~~~~Gi~~~~~iVvy~~   86 (143)
T d1uara1           7 VLVSTDWVQEHLEDPKVRVLEVDEDILLYDTGHIPGAQKIDWQRDFWDPVVRDFISEEEFAKLMERLGISNDTTVVLYGD   86 (143)
T ss_dssp             GEECHHHHHTTTTCTTEEEEEECSSTTHHHHCBCTTCEEECHHHHHBCSSSSSBCCHHHHHHHHHHTTCCTTCEEEEECH
T ss_pred             ccCcHHHHHHHhCCCCeEEEECCCCHHHHhcCCCCCcccccccccccccccccchhhHHHHHHhhhhccCCCceEEEecC
Confidence            36899999988875 489999995 788999999999999984332   23456677888888776  57889999 998


Q ss_pred             CCh-HHHHHHHHHHHcCCCCeeEecccHHHHHhCCCCCCC
Q 030091          145 SGK-RSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       145 ~g~-~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      +|. .|.++++.|+.+||++|++|+||+.+|..+|+|+++
T Consensus        87 ~~~~~a~~~~~~l~~~G~~~V~vldGG~~~W~~~g~p~~~  126 (143)
T d1uara1          87 KNNWWAAYAFWFFKYNGHKDVRLMNGGRQKWVEEGRPLTT  126 (143)
T ss_dssp             HHHHHHHHHHHHHHHTTCSCEEEETTHHHHHHHHTCCCBC
T ss_pred             CCcccchhHHHHHHHhCCceEEEEcCcHHHHHHCCCCccC
Confidence            664 577899999999999999999999999999999874

>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.88  E-value=1.8e-23  Score=147.55  Aligned_cols=95  Identities=22%  Similarity=0.229  Sum_probs=81.0

Q ss_pred             CCccccHHHHHHHHhCC---CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhh--cCCCCCeEE-EeC
Q 030091           71 VPTSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST--RFRKHDEII-GCQ  144 (183)
Q Consensus        71 ~~~~i~~~~~~~~~~~~---~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~--~i~~~~~iv-~C~  144 (183)
                      ....|+++++.++++++   ++|||||++.||..||||||+|+|+.            .+.....  ..+++++|| ||.
T Consensus        21 ~~~~I~~~e~~~~l~~~~~~~~liDvR~~~e~~~ghipgai~~p~~------------~~~~~~~~~~~~~~~~ivl~C~   88 (130)
T d1yt8a4          21 GVERLDLAGLAQWQDEHDRTTYLLDVRTPEEYEAGHLPGSRSTPGG------------QLVQETDHVASVRGARLVLVDD   88 (130)
T ss_dssp             TCEEECHHHHHHHHHCTTSCEEEEECSCHHHHHHCBCTTCEECCHH------------HHHHSHHHHCCSBTCEEEEECS
T ss_pred             CCcccCHHHHHHHHHccCCCEEEEECCCcHHHhcCccCCccccccc------------ccccccccccCCccceEEeecC
Confidence            34679999999999753   68999999999999999999999993            3332222  357888999 999


Q ss_pred             CChHHHHHHHHHHHcCCCCeeEecccHHHHHhCC
Q 030091          145 SGKRSMMAATDLLNAGFAGITDIAGGFAAWRQNG  178 (183)
Q Consensus       145 ~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g  178 (183)
                      +|.||..++..|+++|| +|++|+||+.+|..++
T Consensus        89 ~G~rS~~aa~~L~~~G~-~v~~l~GG~~aw~~~~  121 (130)
T d1yt8a4          89 DGVRANMSASWLAQMGW-QVAVLDGLSEADFSER  121 (130)
T ss_dssp             SSSHHHHHHHHHHHTTC-EEEEECSCCGGGCCBC
T ss_pred             CCccHHHHHHHHHHcCC-CeEEEcCchHHHHHhc
Confidence            99999999999999999 6999999999997764

>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=6.2e-23  Score=142.54  Aligned_cols=101  Identities=23%  Similarity=0.359  Sum_probs=86.1

Q ss_pred             cccHHHHHHHHh-CCCEEEEcCCHHhHh-----------cCCCCCcEEeccccccCCCCCCCHHHHHHHhhc--CCCCCe
Q 030091           74 SVPVRVAHELLQ-AGHRYLDVRTPEEFS-----------AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDE  139 (183)
Q Consensus        74 ~i~~~~~~~~~~-~~~~lIDvR~~~e~~-----------~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~--i~~~~~  139 (183)
                      .++.+++....+ ++++|||+|++++|.           .||||||+|+|+......+.+.+.+.+...+..  ++++++
T Consensus         5 ~~~~~ev~~~~~~~~~~liD~R~~~~f~G~~~~~~~~~~~G~Ipga~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   84 (120)
T d1urha2           5 VVKVTDVLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDELDAIFFGRGVSYDKP   84 (120)
T ss_dssp             BCCHHHHHHHHHHTCSEEEECSCHHHHSSCCCC----CCSSSCTTCEECCGGGGBSSSSBCCHHHHHHHHHTTTCCSSSC
T ss_pred             HccHHHHHHHhhCCCcEEEeCCCHHHcCcccCCcccccccccccccchhchhhcccccccCCHHHhhhhhhhcccCccCc
Confidence            356667666655 559999999999995           799999999999777777777888888877664  678899


Q ss_pred             EE-EeCCChHHHHHHHHHHHcCCCCeeEecccHHHH
Q 030091          140 II-GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAW  174 (183)
Q Consensus       140 iv-~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W  174 (183)
                      || ||++|.+|..+++.|+.+||+||++|+|||.+|
T Consensus        85 ii~yC~sG~~A~~~~~~L~~lG~~~v~~y~Gs~~eW  120 (120)
T d1urha2          85 IIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEW  120 (120)
T ss_dssp             EEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC-
T ss_pred             eEEEccchhHHHHHHHHHHHcCCCCceEcCCChhhC
Confidence            99 999999999999999999999999999999988

>d1okga2 c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

Probab=99.86  E-value=3.8e-23  Score=147.54  Aligned_cols=99  Identities=16%  Similarity=0.285  Sum_probs=80.1

Q ss_pred             HhCCCEEEEcCCHHhHh-----------cCCCCCcEEecccccc----CCCCCCCHHHHHHHhhc-------CCCCCeEE
Q 030091           84 LQAGHRYLDVRTPEEFS-----------AGHATGAINVPYMYRV----GSGMTKNLKFVEEVSTR-------FRKHDEII  141 (183)
Q Consensus        84 ~~~~~~lIDvR~~~e~~-----------~ghIpgAi~ip~~~~~----~~~~~~~~~~~~~~~~~-------i~~~~~iv  141 (183)
                      +..+++|||+|+++||.           .||||||+|+|+....    ....+.+++.+...+..       ++++++||
T Consensus         9 ~~p~~vlvD~R~~~ef~G~~~~~~~~~~~GHIpgAvnip~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~vV   88 (139)
T d1okga2           9 IPPQAIITDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTRGDGKVLRSEEEIRHNIMTVVQGAGDAADLSSFV   88 (139)
T ss_dssp             SCTTCCEEECSCHHHHTCCSSCCTTCSSSSCSTTCEECCGGGGEECCSSSCEECCHHHHHHHHHTTCC-----CCCTTSE
T ss_pred             CCCCeEEEeCCCHHHhCCcCCCcccCCcCceeCCCeeccchhhccccccccccCCHHHhhhhhhhhhhhccCCCCCCeEE
Confidence            34568999999999997           7999999999985443    12345667766665542       45667888


Q ss_pred             -EeCCChHHHHHHHHHHHcCCCCeeEecccHHHHHh-CCCCCC
Q 030091          142 -GCQSGKRSMMAATDLLNAGFAGITDIAGGFAAWRQ-NGLPTE  182 (183)
Q Consensus       142 -~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~-~g~pv~  182 (183)
                       ||++|.+|+.+++.|+.+||++|++|+|||.+|.+ .++||+
T Consensus        89 ~yC~sG~~Aa~~~~~L~~~G~~~v~vydGsw~eW~~~~~~Pv~  131 (139)
T d1okga2          89 FSCGSGVTACINIALVHHLGLGHPYLYCGSWSEYSGLFRPPIM  131 (139)
T ss_dssp             EECSSSSTHHHHHHHHHHTTSCCCEECSSHHHHHHHHTHHHHH
T ss_pred             EECCCcHHHHHHHHHHHHhCCCCccCCCCCHHHHhCCCCCCee
Confidence             99999999999999999999999999999999966 577875

>d1t3ka_ c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Dual specificity phosphatase Cdc25
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.86  E-value=4.8e-23  Score=145.63  Aligned_cols=103  Identities=18%  Similarity=0.281  Sum_probs=82.3

Q ss_pred             CccccHHHHHHHHhCC-CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhcCCCCCeEE-EeCCC-hH
Q 030091           72 PTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEII-GCQSG-KR  148 (183)
Q Consensus        72 ~~~i~~~~~~~~~~~~-~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i~~~~~iv-~C~~g-~~  148 (183)
                      ...|+++++.++++++ .+|||||+++||+.||||||+|+|+..+        .+.+..+...+++++.+| ||..| .+
T Consensus         7 v~~I~~~el~~~~~~~~v~iIDvR~~~e~~~ghIpgAinip~~~~--------~~~~~~~~~~~~~~~~iv~~c~~~~~~   78 (132)
T d1t3ka_           7 ISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSF--------DDKISHLVQNVKDKDTLVFHSALSQVR   78 (132)
T ss_dssp             SEEECTTTTTTCCCCTTEEEEEESCSHHHHSSCCCSSEEECCSSS--------STTHHHHHHTCCSCCEEEESSSCCSSS
T ss_pred             CCEECHHHHHHHHhCCCeEEEEccCHHHHHhccCcccceeeeecc--------cccccccccccccccceEEEecccccc
Confidence            4678888888888665 8899999999999999999999998522        234556666777888899 99754 45


Q ss_pred             HHHHHHHHH--------HcCCCCeeEecccHHHHHhCCCCCC
Q 030091          149 SMMAATDLL--------NAGFAGITDIAGGFAAWRQNGLPTE  182 (183)
Q Consensus       149 s~~aa~~L~--------~~G~~~v~~l~GG~~~W~~~g~pv~  182 (183)
                      +..++..|.        ..||+||++|+||+.+|.++|+|+.
T Consensus        79 ~~~aa~~l~~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~pv~  120 (132)
T d1t3ka_          79 GPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVC  120 (132)
T ss_dssp             HHHHHHHHHHHHHHSSSCCCSSEEEEESSTTHHHHHHSCSSC
T ss_pred             chHHHHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHcCCCcc
Confidence            555554443        4699999999999999999999986

>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

Probab=99.85  E-value=1.4e-21  Score=141.55  Aligned_cols=109  Identities=17%  Similarity=0.107  Sum_probs=89.4

Q ss_pred             ccccHHHHHHHHhCCCEEEEcC--------CHHhHhcCCCCCcEEecccccc--------CCCCCCCHHHHHHHhhc--C
Q 030091           73 TSVPVRVAHELLQAGHRYLDVR--------TPEEFSAGHATGAINVPYMYRV--------GSGMTKNLKFVEEVSTR--F  134 (183)
Q Consensus        73 ~~i~~~~~~~~~~~~~~lIDvR--------~~~e~~~ghIpgAi~ip~~~~~--------~~~~~~~~~~~~~~~~~--i  134 (183)
                      ..|+++++.+.+++ +.|||+|        ...+|..||||||+++++....        ..+++.+.+.+...+..  |
T Consensus         8 ~lvs~~~L~~~l~d-~~iiD~r~~l~~~~~g~~~Y~~gHIPGA~~~d~~~~l~~~~~~~~~~~~lP~~~~~~~~l~~lGI   86 (156)
T d1okga1           8 VFLDPSEVADHLAE-YRIVDCRYSLKIKDHGSIQYAKEHVKSAIRADVDTNLSKLVPTSTARHPLPPCAEFIDWCMANGM   86 (156)
T ss_dssp             CEECHHHHTTCGGG-SEEEECCCCSSSTTTTTTHHHHCEETTCEECCTTTTSCCCCTTCCCSSCCCCHHHHHHHHHHTTC
T ss_pred             cEeCHHHHHHhcCC-CEEEEeeccCCCCcchHHHHHHcCCCCCeEcCHHHhcccccCCCCCccccCCHHHHHHHHHhccc
Confidence            46899999887765 8999999        4689999999999999975432        12346677788877765  6


Q ss_pred             CCCCeEE-EeCC-C-hHHHHHHHHHHHcCCCCeeEecccHHHHHhCCCCCCC
Q 030091          135 RKHDEII-GCQS-G-KRSMMAATDLLNAGFAGITDIAGGFAAWRQNGLPTEP  183 (183)
Q Consensus       135 ~~~~~iv-~C~~-g-~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~  183 (183)
                      +++++|| ||+. | ..+.+++|.|+.+|+ +|++|+||+.+|.++|+|+++
T Consensus        87 ~~~~~VVvYd~~~g~~~A~R~~w~L~~~G~-~v~iLdGG~~aW~~~G~pv~t  137 (156)
T d1okga1          87 AGELPVLCYDDECGAMGGCRLWWMLNSLGA-DAYVINGGFQACKAAGLEMES  137 (156)
T ss_dssp             SSSSCEEEECSSTTTTTHHHHHHHHHHHTC-CEEEETTTTHHHHTTTCCEEC
T ss_pred             cCCceEEEEeCCCCchHHHHHHHHHHHcCC-eeEEeCCCHHHHHHCCCCCCC
Confidence            8889999 9864 3 468899999999997 699999999999999999863

>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3.2e-20  Score=135.26  Aligned_cols=98  Identities=18%  Similarity=0.303  Sum_probs=78.0

Q ss_pred             CCCCccccHHHHHHHHhC-------CCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhc------CC
Q 030091           69 VGVPTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR------FR  135 (183)
Q Consensus        69 ~~~~~~i~~~~~~~~~~~-------~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~------i~  135 (183)
                      ......|+++++.+++++       +++|||||++.||+.||||||+|+|..           +.+...+..      ..
T Consensus        19 ~~~~k~Is~~~l~~ll~~~~~~~~~~~~IIDvR~~~Ey~~gHI~gAinip~~-----------~~~~~~l~~~~~~~~~~   87 (161)
T d1c25a_          19 HQDLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHME-----------EEVEDFLLKKPIVPTDG   87 (161)
T ss_dssp             CTTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSH-----------HHHHHHTTTSCCCCCTT
T ss_pred             CCCCCccCHHHHHHHHhhhhhcccCCEEEEECCCHHHHHhhhcCCcEEcCcH-----------HHHHHHHhhhhhhhhhc
Confidence            344567999999999874       389999999999999999999999974           444443322      12


Q ss_pred             CCCeEE-EeC-CChHHHHHHHHHHHc----------CCCCeeEecccHHHHHhC
Q 030091          136 KHDEII-GCQ-SGKRSMMAATDLLNA----------GFAGITDIAGGFAAWRQN  177 (183)
Q Consensus       136 ~~~~iv-~C~-~g~~s~~aa~~L~~~----------G~~~v~~l~GG~~~W~~~  177 (183)
                      ++..|| ||. +|.|+..++..|+..          ||++|++|+||+.+|.++
T Consensus        88 ~~~~vV~yc~~s~~rs~~~a~~l~~~~~~~~~~~~~g~~~V~vL~GG~~~w~~~  141 (161)
T d1c25a_          88 KRVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMK  141 (161)
T ss_dssp             SEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHHHHHHH
T ss_pred             cCCeEEEEeccccccHHHHHHHHHHHHHhhccccccCCCeEEEECCcHHHHHHH
Confidence            334577 997 789999999988754          999999999999999764

>d1ymka1 c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=5.6e-19  Score=130.09  Aligned_cols=97  Identities=20%  Similarity=0.297  Sum_probs=76.6

Q ss_pred             CCCccccHHHHHHHHhC-------CCEEEEcCCHHhHhcCCCCCcEEeccccccCCCCCCCHHHHHHHhhc-------CC
Q 030091           70 GVPTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR-------FR  135 (183)
Q Consensus        70 ~~~~~i~~~~~~~~~~~-------~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~-------i~  135 (183)
                      .....|+++++.+++++       +++|||||++.||..|||+||+|+|..           .........       .+
T Consensus        20 ~~~k~Isp~eL~~ll~~~~~~~~~~~lIID~R~~~Ey~~gHI~gAiNi~~~-----------~~~~~~~~~~~~~~~~~~   88 (174)
T d1ymka1          20 QDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLE-----------RDAESFLLKSPIAPCSLD   88 (174)
T ss_dssp             TTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSH-----------HHHHHHHHTTTCCC----
T ss_pred             CCCcEeCHHHHHHHHhhhhhcccCCEEEEECCCchhhhhhhcCCccccCch-----------HHHHHHHHHhhhhhhhhc
Confidence            34567999999999974       389999999999999999999999984           333332211       23


Q ss_pred             CCCeEE-EeC-CChHHHHHHHHHHH----------cCCCCeeEecccHHHHHhC
Q 030091          136 KHDEII-GCQ-SGKRSMMAATDLLN----------AGFAGITDIAGGFAAWRQN  177 (183)
Q Consensus       136 ~~~~iv-~C~-~g~~s~~aa~~L~~----------~G~~~v~~l~GG~~~W~~~  177 (183)
                      ++..|| ||. ++.++..++..|+.          .||++|++|+||+.+|.+.
T Consensus        89 ~~~~vV~yc~~s~~r~~~~a~~l~~~~~~~~~~~~~g~~~VyiL~GGf~~f~~~  142 (174)
T d1ymka1          89 KRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQ  142 (174)
T ss_dssp             CEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTT
T ss_pred             cCceEEEEeCCCCchHHHHHHHHHHHHHHhhhccccCCceEEEecCcHHHHHHh
Confidence            445688 997 67889889988875          4999999999999999764

>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Ubiquitin carboxyl-terminal hydrolase 8, USP8
domain: Ubiquitin carboxyl-terminal hydrolase 8, USP8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.1e-17  Score=117.65  Aligned_cols=104  Identities=8%  Similarity=0.052  Sum_probs=71.8

Q ss_pred             cccHHHHHHHHhCC---CEEEEcCCHHhHhcCCCCCcEEeccccccCCCCC-----CCHHHHHHHhhcCCCCCeEE-EeC
Q 030091           74 SVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMT-----KNLKFVEEVSTRFRKHDEII-GCQ  144 (183)
Q Consensus        74 ~i~~~~~~~~~~~~---~~lIDvR~~~e~~~ghIpgAi~ip~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~iv-~C~  144 (183)
                      .|+++++.++++++   ++|||+|+++||..+|||||+|||...+......     ................+.|| ||.
T Consensus         2 ~Is~~eL~~~l~~~~~~~liiDvR~~~ey~~~hI~gAinip~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~iV~yd~   81 (135)
T d2gwfa1           2 AITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPDDSKDTWKKRGNVEYVVLLDW   81 (135)
T ss_dssp             EECHHHHHHHHHSTTSCEEEEECSCHHHHHHSCBTTCEECCGGGCCTTCCHHHHHHTSCHHHHHHHHTTTTSSEEEEECS
T ss_pred             eECHHHHHHHHhcCCCCEEEEEecCCccccCCccCCeEEeCHHHcccccchhhhhhhhhHHHHHHHhccCCCCeEEEEeC
Confidence            58999999999753   8999999999999999999999998544321100     01122223344456677888 998


Q ss_pred             CCh-HH---H----HHHHHHH-----HcCCCCeeEecccHHHHHhC
Q 030091          145 SGK-RS---M----MAATDLL-----NAGFAGITDIAGGFAAWRQN  177 (183)
Q Consensus       145 ~g~-~s---~----~aa~~L~-----~~G~~~v~~l~GG~~~W~~~  177 (183)
                      .+. ++   .    ...+.|.     ..|+.+|++|+||+.+|.+.
T Consensus        82 ~s~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~iL~GG~~~w~~~  127 (135)
T d2gwfa1          82 FSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC  127 (135)
T ss_dssp             SCCGGGCCTTCHHHHHHHHHHTSCCSSCCSSCCEEETTHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHhcccccccCCCcEEEEechHHHHHHh
Confidence            642 21   1    1223333     24678899999999999886

>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Erk2 binding domain of Mapk phosphatase mkp-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.9e-16  Score=113.83  Aligned_cols=103  Identities=20%  Similarity=0.174  Sum_probs=70.4

Q ss_pred             ccccHHHHHHHHh---CCCEEEEcCCHHhHhcCCCCCcEEecccccc----------CCCCCCCHHHHHHHhhcCCCCCe
Q 030091           73 TSVPVRVAHELLQ---AGHRYLDVRTPEEFSAGHATGAINVPYMYRV----------GSGMTKNLKFVEEVSTRFRKHDE  139 (183)
Q Consensus        73 ~~i~~~~~~~~~~---~~~~lIDvR~~~e~~~ghIpgAi~ip~~~~~----------~~~~~~~~~~~~~~~~~i~~~~~  139 (183)
                      ..++++++++.++   .+.+|||||++.||+.||||||+|+++....          ....+... ..........+++.
T Consensus        16 ~~~s~e~L~~~l~~~~~~~lilDvR~~~ey~~~HI~gAini~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   94 (154)
T d1hzma_          16 ISKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPVRALFTRG-EDRDRFTRRCGTDT   94 (154)
T ss_dssp             SBSCCCCHHHHHHHCSSSCEEECCSTTHHHHHHTSSSCCCCCCSSHHHHTBCCSCCCTTTTSTTS-HHHHHHHHSTTSSC
T ss_pred             CccCHHHHHHHHhcCCCCEEEEECCCHHHHhcCCCCCCcccCcHHHHhhhccCCcccccccCCcH-HHHHHHhhcCCCCe
Confidence            3577888888885   3489999999999999999999999974321          01122222 22333444566678


Q ss_pred             EE-EeCCCh----------HHHHHHHHHHHcCCCCeeEecccHHHHHhC
Q 030091          140 II-GCQSGK----------RSMMAATDLLNAGFAGITDIAGGFAAWRQN  177 (183)
Q Consensus       140 iv-~C~~g~----------~s~~aa~~L~~~G~~~v~~l~GG~~~W~~~  177 (183)
                      || ||.++.          +.......|...|+ +|++|+||+.+|.+.
T Consensus        95 VVvYd~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~v~iL~GG~~~w~~~  142 (154)
T d1hzma_          95 VVLYDESSSDWNENTGGESLLGLLLKKLKDEGC-RAFYLEGGFSKFQAE  142 (154)
T ss_dssp             EEECCCSSSSSCSCSSCCSHHHHHHHHHHHTTC-CCEECCCCHHHHHHH
T ss_pred             EEEEcCCCchhhhhHHHHHHHHHHHHHHHhcCC-eEEEEeCcHHHHHHH
Confidence            88 998642          22334444555554 799999999999875

>d1xria_ c.45.1.1 (A:) Putative phosphatase At1g05000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Putative phosphatase At1g05000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.43  E-value=0.27  Score=32.87  Aligned_cols=87  Identities=7%  Similarity=-0.063  Sum_probs=47.3

Q ss_pred             cHHHHHHHHhCC-CEEEEcCCHHhHh-------cCCCCCcEEeccccccCCCCCCCHHHHHHHhhcC--CCCCeEE-EeC
Q 030091           76 PVRVAHELLQAG-HRYLDVRTPEEFS-------AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEII-GCQ  144 (183)
Q Consensus        76 ~~~~~~~~~~~~-~~lIDvR~~~e~~-------~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~i--~~~~~iv-~C~  144 (183)
                      +++++..+.+-+ -.|||.|+..|..       ...| .-+|+|.............+.+...+..+  ..+.+++ +|.
T Consensus        22 t~~~~~~L~~lgIktIidLr~~~e~~~~~~~~~~~gi-~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlvHC~  100 (151)
T d1xria_          22 DSANFSFLQTLGLRSIIYLCPEPYPESNLQFLKSNGI-RLFQFGIEGNKEPFVNIPDHKIRMALKVLLDEKNHPVLIHCK  100 (151)
T ss_dssp             CHHHHHHHHHHTCSEEEECCSSCCCHHHHHHHHHHTC-EEEECCCCCCCGGGCCCCHHHHHHHHHHHHCGGGCSEEEECS
T ss_pred             CHHHHHHHHHCCCCEEEECCCcchhhcccchhhhcCc-eEeecCccccccccccccHHHHHHHHHHHhcCCCCCEEEEcC
Confidence            455665555556 6899999755432       1112 22456653222222233445555555442  3456788 999


Q ss_pred             CC-hHHHH-HHHHHHHcCCCC
Q 030091          145 SG-KRSMM-AATDLLNAGFAG  163 (183)
Q Consensus       145 ~g-~~s~~-aa~~L~~~G~~~  163 (183)
                      .| .|+.. ++-.+...|...
T Consensus       101 ~GkdRTG~v~a~~l~~~g~~~  121 (151)
T d1xria_         101 RGKHRTGCLVGCLRKLQKWCL  121 (151)
T ss_dssp             SSSSHHHHHHHHHHHHTTBCH
T ss_pred             CCchHHHHHHHHHHHHcCCCH
Confidence            88 46554 444555668653

>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Thermus thermophilus [TaxId: 274]

Probab=85.59  E-value=0.34  Score=33.58  Aligned_cols=47  Identities=9%  Similarity=0.135  Sum_probs=36.5

Q ss_pred             HHHHHHhhcCCCCCeEE-EeCCChHHHHHHHHHHHcCCCCeeEecccHH
Q 030091          125 KFVEEVSTRFRKHDEII-GCQSGKRSMMAATDLLNAGFAGITDIAGGFA  172 (183)
Q Consensus       125 ~~~~~~~~~i~~~~~iv-~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~  172 (183)
                      +.+..+.+.+.++.+++ ||.+-..+...+..|.+.|+. +..|.|++.
T Consensus        19 dll~~i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~Gi~-a~~~Hg~~~   66 (174)
T d1c4oa2          19 DLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIR-ARYLHHELD   66 (174)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCC-EEEECTTCC
T ss_pred             HHHHHHHHHHhcCCcEEEEEcchhHHHHHHHHHHhcCCc-eEEEecccc
Confidence            45555555555667777 999988899999999999996 777888864

>d1fpza_ c.45.1.1 (A:) Kinase associated phosphatase (kap) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Kinase associated phosphatase (kap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.24  E-value=1.1  Score=30.52  Aligned_cols=79  Identities=22%  Similarity=0.178  Sum_probs=43.6

Q ss_pred             HHHHHHHHhCC-CEEEEcCCHHhHhcCCCCC-----------cEEeccccccCCCCCCCHHHHHH----HhhcCCCCCeE
Q 030091           77 VRVAHELLQAG-HRYLDVRTPEEFSAGHATG-----------AINVPYMYRVGSGMTKNLKFVEE----VSTRFRKHDEI  140 (183)
Q Consensus        77 ~~~~~~~~~~~-~~lIDvR~~~e~~~ghIpg-----------Ai~ip~~~~~~~~~~~~~~~~~~----~~~~i~~~~~i  140 (183)
                      .+++..+.+.+ ..||..-+..|+..-.++.           -+++|+.+.    ...+.+.+..    +.+.+..+.+|
T Consensus        37 ~~dl~~L~~~gi~~Vv~L~~~~E~~~~~~~~~~~~~~~~gi~~~~~p~~D~----~~p~~~~~~~~~~~i~~~l~~~~~V  112 (176)
T d1fpza_          37 QKDTEELKSCGIQDIFVFCTRGELSKYRVPNLLDLYQQCGIITHHHPIADG----GTPDIASCCEIMEELTTCLKNYRKT  112 (176)
T ss_dssp             HHHHHHHHHHTCCEEEECCCHHHHHHTTCTTHHHHHHHTTCEEEECCCCTT----CCCCHHHHHHHHHHHHHHHHTTCCE
T ss_pred             HHHHHHHHhCCCCEEEEeCChhhhhhcCCCcHHHHHHHcCCEEEeCCccCC----CchhhHHHHHHHHHHHHHHHcCCeE
Confidence            45566666666 5788888887766444432           245555322    1222233333    33345567778


Q ss_pred             E-EeCCC-hHHH-HHHHHHHHc
Q 030091          141 I-GCQSG-KRSM-MAATDLLNA  159 (183)
Q Consensus       141 v-~C~~g-~~s~-~aa~~L~~~  159 (183)
                      + +|..| .|+. .++..|...
T Consensus       113 ~VHC~~G~gRtg~v~~~~Li~~  134 (176)
T d1fpza_         113 LIHSYGGLGRSCLVAACLLLYL  134 (176)
T ss_dssp             EEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEecCCCCchHHHHHHHHHHH
Confidence            8 99977 4555 444555443

>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.01  E-value=0.84  Score=30.91  Aligned_cols=47  Identities=17%  Similarity=0.178  Sum_probs=34.6

Q ss_pred             HHHHHhhcCCCCCeEEEeCCChHHHHHHHHHHHcCCCCeeEecccHHH
Q 030091          126 FVEEVSTRFRKHDEIIGCQSGKRSMMAATDLLNAGFAGITDIAGGFAA  173 (183)
Q Consensus       126 ~~~~~~~~i~~~~~iv~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~~  173 (183)
                      .+.+++.....++.||||++-..+..++..|...|++ +..+.|++..
T Consensus        17 ~L~~ll~~~~~~k~iIF~~~~~~~~~l~~~L~~~~~~-~~~ihg~~~~   63 (168)
T d1t5ia_          17 KLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFP-AIAIHRGMPQ   63 (168)
T ss_dssp             HHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCC-EEEECTTSCH
T ss_pred             HHHHHHHhCCCCeEEEEEeeeecchhhhhhhcccccc-ccccccccch
Confidence            4444555566556555999877788899999999995 7778888643

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=81.08  E-value=1.8  Score=27.49  Aligned_cols=47  Identities=13%  Similarity=0.214  Sum_probs=35.5

Q ss_pred             CCHHHHHHHhhcCCCCCeEEEeCCChHHHHHHHHHHHcCCCCeeEecc
Q 030091          122 KNLKFVEEVSTRFRKHDEIIGCQSGKRSMMAATDLLNAGFAGITDIAG  169 (183)
Q Consensus       122 ~~~~~~~~~~~~i~~~~~iv~C~~g~~s~~aa~~L~~~G~~~v~~l~G  169 (183)
                      .+-+....+.+.+.+.+++++..+|.-...+|..|++.|.+ |.+++.
T Consensus        15 rtl~Da~~l~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~-Vtli~~   61 (121)
T d1d7ya2          15 RTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVH-VSLVET   61 (121)
T ss_dssp             CSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCHHHHHHHHHhhhcCCeEEEECcchhHHHHHHHhhcccce-EEEEee
Confidence            34455666667777778888778888888999999999974 766653

>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.77  E-value=1.6  Score=29.29  Aligned_cols=47  Identities=15%  Similarity=0.302  Sum_probs=34.6

Q ss_pred             HHHHHHhhcCCCCCeEEEeCCChHHHHHHHHHHHcCCCCeeEecccHH
Q 030091          125 KFVEEVSTRFRKHDEIIGCQSGKRSMMAATDLLNAGFAGITDIAGGFA  172 (183)
Q Consensus       125 ~~~~~~~~~i~~~~~iv~C~~g~~s~~aa~~L~~~G~~~v~~l~GG~~  172 (183)
                      +.+..+++..+..+.||||++-..+...+..|...|+. +..+.|++.
T Consensus        16 ~~L~~ll~~~~~~k~iIF~~s~~~~~~l~~~L~~~~~~-~~~~~~~~~   62 (162)
T d1fuka_          16 ECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFT-VSAIYSDLP   62 (162)
T ss_dssp             HHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCC-EEEECTTSC
T ss_pred             HHHHHHHHhCCCCcEEEEEEEEchHHHHHHHHhhcCce-EEEeccCCc
Confidence            34555566666656555999988888999999999995 777777653