Citrus Sinensis ID: 030120
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 182 | 2.2.26 [Sep-21-2011] | |||||||
| Q96361 | 182 | ADP-ribosylation factor 1 | N/A | no | 0.989 | 0.989 | 0.938 | 1e-98 | |
| P40940 | 182 | ADP-ribosylation factor 3 | yes | no | 0.989 | 0.989 | 0.933 | 2e-98 | |
| P38116 | 183 | ADP-ribosylation factor-l | yes | no | 0.978 | 0.972 | 0.642 | 9e-65 | |
| P25160 | 180 | ADP-ribosylation factor-l | yes | no | 0.939 | 0.95 | 0.666 | 2e-64 | |
| P36397 | 181 | ADP-ribosylation factor 1 | no | no | 0.983 | 0.988 | 0.597 | 8e-64 | |
| P51822 | 181 | ADP-ribosylation factor 1 | N/A | no | 0.983 | 0.988 | 0.597 | 1e-63 | |
| Q06396 | 181 | ADP-ribosylation factor 1 | no | no | 0.983 | 0.988 | 0.592 | 1e-63 | |
| P0DH91 | 181 | ADP-ribosylation factor 2 | no | no | 0.972 | 0.977 | 0.598 | 1e-63 | |
| Q9LQC8 | 181 | ADP-ribosylation factor 2 | no | no | 0.972 | 0.977 | 0.598 | 1e-63 | |
| O48920 | 181 | ADP-ribosylation factor O | N/A | no | 0.983 | 0.988 | 0.592 | 2e-63 |
| >sp|Q96361|ARF1_BRARP ADP-ribosylation factor 1 OS=Brassica rapa subsp. pekinensis GN=ARF1 PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 358 bits (919), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 169/180 (93%), Positives = 177/180 (98%)
Query: 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MGI+F+RMFSS+FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN
Sbjct: 1 MGILFTRMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV 120
IKFQVWDLGGQTSIRPYWRCYFPNT+AVIYVVDSSDTDRI AKEEFHAILEEEELKGAV
Sbjct: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEEELKGAV 120
Query: 121 ALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180
LIFANKQDLPGALDDAAV+EALELHKIK+RQWAIFKTCA+KGEGLFEG+DWLSNTLKSG
Sbjct: 121 VLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTLKSG 180
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Brassica rapa subsp. pekinensis (taxid: 51351) |
| >sp|P40940|ARF3_ARATH ADP-ribosylation factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 357 bits (916), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 168/180 (93%), Positives = 177/180 (98%)
Query: 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MGI+F+RMFSS+FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN
Sbjct: 1 MGILFTRMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV 120
IKFQVWDLGGQTSIRPYWRCYFPNT+AVIYVVDSSDTDRI AKEEFHAILEE+ELKGAV
Sbjct: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEDELKGAV 120
Query: 121 ALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180
LIFANKQDLPGALDDAAV+EALELHKIK+RQWAIFKTCA+KGEGLFEG+DWLSNTLKSG
Sbjct: 121 VLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTLKSG 180
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GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Arabidopsis thaliana (taxid: 3702) |
| >sp|P38116|ARL1_YEAST ADP-ribosylation factor-like protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARL1 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 246 bits (627), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 115/179 (64%), Positives = 143/179 (79%), Gaps = 1/179 (0%)
Query: 1 MGIMFSRMFSSLFG-NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYN 59
MG +FS MF L+G NKE RIL+LGLD AGKTTILYRLQ+GEVV+T PTIGFNVET+ Y
Sbjct: 1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYK 60
Query: 60 NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGA 119
N+K VWDLGGQTSIRPYWRCY+ +T AVI+VVDS+D DR+ TA +E H +L+EEEL+ A
Sbjct: 61 NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDA 120
Query: 120 VALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178
L+FANKQD PGAL + VS+ L L ++K+R W+I + AIKGEG+ EG+DWL + +K
Sbjct: 121 ALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIK 179
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Recruits golgins such as IMH1 to the Golgi. Can bind and hydrolyze GTP. May be involved in trafficking events within the endosomal system. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|P25160|ARL1_DROME ADP-ribosylation factor-like protein 1 OS=Drosophila melanogaster GN=Arf72A PE=2 SV=5 | Back alignment and function description |
|---|
Score = 244 bits (623), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 114/171 (66%), Positives = 136/171 (79%)
Query: 9 FSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDL 68
F L G++E RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVE V Y N+KFQVWDL
Sbjct: 8 FRGLLGSREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVEQVTYKNLKFQVWDL 67
Query: 69 GGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQ 128
GGQTSIRPYWRCY+ NT+A+IYVVDS+D DRI +K+E +L EEEL GA+ ++ ANKQ
Sbjct: 68 GGQTSIRPYWRCYYSNTDAIIYVVDSADRDRIGISKDELLYMLREEELAGAILVVLANKQ 127
Query: 129 DLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
D+ G + A V AL L +KNR + IFKT A KGEGL + MDWLSNTL+S
Sbjct: 128 DMDGCMTVAEVHHALGLENLKNRTFQIFKTSATKGEGLDQAMDWLSNTLQS 178
|
Binds and hydrolyzes GTP. Does not act as an allosteric activator of the cholera toxin catalytic subunit. Drosophila melanogaster (taxid: 7227) |
| >sp|P36397|ARF1_ARATH ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 242 bits (618), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 107/179 (59%), Positives = 140/179 (78%)
Query: 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG+ F ++FS LF KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y N
Sbjct: 1 MGLSFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV 120
I F VWD+GGQ IRP WR YF NT+ +I+VVDS+D DR+ A++E H +L E+EL+ AV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 ALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
L+FANKQDLP A++ A +++ L LH ++ R W I TCA GEGL+EG+DWLSN + S
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; required for the sequence-specific vacuolar sorting route to the lytic vacuole, for the ER-to-Golgi transport and for the Golgi-derived transport to the plasma membrane. Involved in the recruitment of COPI and GDAP1 to membranes. Arabidopsis thaliana (taxid: 3702) |
| >sp|P51822|ARF1_DAUCA ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 242 bits (617), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 107/179 (59%), Positives = 140/179 (78%)
Query: 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG+ F+++FS LF KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y N
Sbjct: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV 120
I F VWD+GGQ IRP WR YF NT+ +I+VVDS+D DR+ A++E H +L E+EL+ AV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 ALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
L+FANKQDLP A++ A + + L LH ++ R W I TCA GEGL+EG+DWLSN + S
Sbjct: 121 LLVFANKQDLPNAMNAAEIIDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Daucus carota (taxid: 4039) |
| >sp|Q06396|ARF1_ORYSJ ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 241 bits (616), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 106/179 (59%), Positives = 141/179 (78%)
Query: 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG+ F+++FS LF KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y N
Sbjct: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV 120
I F VWD+GGQ IRP WR YF NT+ +I+VVDS+D +R+ A++E H +L E+EL+ AV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAV 120
Query: 121 ALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
L+FANKQDLP A++ A +++ L LH ++ R W I TCA GEGL+EG+DWLSN + S
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAS 179
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|P0DH91|ARF2B_ARATH ADP-ribosylation factor 2-B OS=Arabidopsis thaliana GN=ARF2-B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 241 bits (616), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 106/177 (59%), Positives = 140/177 (79%)
Query: 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG+ F+++FS LF KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y N
Sbjct: 1 MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV 120
I F VWD+GGQ IRP WR YF NT+ +I+VVDS+D DR+ A++E H +L E+EL+ AV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 ALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177
L+FANKQDLP A++ A +++ L LH ++ R W I TCA GEGL+EG+DWLSN +
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQC8|ARF2A_ARATH ADP-ribosylation factor 2-A OS=Arabidopsis thaliana GN=ARF2-A PE=2 SV=2 | Back alignment and function description |
|---|
Score = 241 bits (616), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 106/177 (59%), Positives = 140/177 (79%)
Query: 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG+ F+++FS LF KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y N
Sbjct: 1 MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV 120
I F VWD+GGQ IRP WR YF NT+ +I+VVDS+D DR+ A++E H +L E+EL+ AV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 ALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177
L+FANKQDLP A++ A +++ L LH ++ R W I TCA GEGL+EG+DWLSN +
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Arabidopsis thaliana (taxid: 3702) |
| >sp|O48920|ARF_VIGUN ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3 | Back alignment and function description |
|---|
Score = 241 bits (616), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 106/179 (59%), Positives = 141/179 (78%)
Query: 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG+ F+++FS LF KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y N
Sbjct: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV 120
I F VWD+GGQ IRP WR YF NT+ +I+VVDS+D DR+ A++E H +L E+EL+ AV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 ALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
L+FANKQDLP A++ A +++ L LH ++ R W I TCA GEGL+EG++WLSN + S
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLEWLSNNIAS 179
|
GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Vigna unguiculata (taxid: 3917) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 182 | ||||||
| 3182922 | 182 | RecName: Full=ADP-ribosylation factor 1 | 0.989 | 0.989 | 0.938 | 6e-97 | |
| 30682545 | 182 | ADP-ribosylation factor 3 [Arabidopsis t | 0.989 | 0.989 | 0.933 | 1e-96 | |
| 449462681 | 182 | PREDICTED: ADP-ribosylation factor 1-lik | 0.994 | 0.994 | 0.922 | 2e-96 | |
| 225446168 | 182 | PREDICTED: ADP-ribosylation factor 1 [Vi | 0.994 | 0.994 | 0.922 | 5e-96 | |
| 225430573 | 181 | PREDICTED: ADP-ribosylation factor 1 [Vi | 0.994 | 1.0 | 0.911 | 9e-96 | |
| 297802862 | 182 | ADP-ribosylation factor 3 [Arabidopsis l | 0.989 | 0.989 | 0.922 | 1e-95 | |
| 224143382 | 182 | predicted protein [Populus trichocarpa] | 0.994 | 0.994 | 0.922 | 1e-95 | |
| 356562475 | 182 | PREDICTED: ADP-ribosylation factor 1-lik | 0.994 | 0.994 | 0.922 | 2e-95 | |
| 224117610 | 182 | predicted protein [Populus trichocarpa] | 0.994 | 0.994 | 0.917 | 3e-95 | |
| 358249126 | 182 | uncharacterized protein LOC100815426 [Gl | 0.994 | 0.994 | 0.917 | 3e-95 |
| >gi|3182922|sp|Q96361.3|ARF1_BRARP RecName: Full=ADP-ribosylation factor 1 gi|1654142|gb|AAB17725.1| small GTP-binding protein ARF [Brassica rapa subsp. campestris] | Back alignment and taxonomy information |
|---|
Score = 358 bits (919), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 169/180 (93%), Positives = 177/180 (98%)
Query: 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MGI+F+RMFSS+FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN
Sbjct: 1 MGILFTRMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV 120
IKFQVWDLGGQTSIRPYWRCYFPNT+AVIYVVDSSDTDRI AKEEFHAILEEEELKGAV
Sbjct: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEEELKGAV 120
Query: 121 ALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180
LIFANKQDLPGALDDAAV+EALELHKIK+RQWAIFKTCA+KGEGLFEG+DWLSNTLKSG
Sbjct: 121 VLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTLKSG 180
|
Source: Brassica rapa subsp. campestris Species: Brassica rapa Genus: Brassica Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30682545|ref|NP_850057.1| ADP-ribosylation factor 3 [Arabidopsis thaliana] gi|297821835|ref|XP_002878800.1| ADP-ribosylation factor 3 [Arabidopsis lyrata subsp. lyrata] gi|728882|sp|P40940.2|ARF3_ARATH RecName: Full=ADP-ribosylation factor 3; Short=AtARF3; AltName: Full=Protein ARF-LIKE 1; Short=AtARL1 gi|453191|emb|CAA54564.1| ADP-ribosylation factor 3 [Arabidopsis thaliana] gi|17380732|gb|AAL36196.1| putative ADP-ribosylation factor 3 [Arabidopsis thaliana] gi|23297380|gb|AAN12955.1| ADP-ribosylation factor 3 [Arabidopsis thaliana] gi|26450543|dbj|BAC42384.1| putative ADP-ribosylation factor 3 protein [Arabidopsis thaliana] gi|297324639|gb|EFH55059.1| ADP-ribosylation factor 3 [Arabidopsis lyrata subsp. lyrata] gi|330252531|gb|AEC07625.1| ADP-ribosylation factor 3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 357 bits (916), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 168/180 (93%), Positives = 177/180 (98%)
Query: 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MGI+F+RMFSS+FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN
Sbjct: 1 MGILFTRMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV 120
IKFQVWDLGGQTSIRPYWRCYFPNT+AVIYVVDSSDTDRI AKEEFHAILEE+ELKGAV
Sbjct: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEDELKGAV 120
Query: 121 ALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180
LIFANKQDLPGALDDAAV+EALELHKIK+RQWAIFKTCA+KGEGLFEG+DWLSNTLKSG
Sbjct: 121 VLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTLKSG 180
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462681|ref|XP_004149069.1| PREDICTED: ADP-ribosylation factor 1-like [Cucumis sativus] gi|449519531|ref|XP_004166788.1| PREDICTED: ADP-ribosylation factor 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 356 bits (914), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 167/181 (92%), Positives = 177/181 (97%)
Query: 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MGI+F+RMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN
Sbjct: 1 MGILFTRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV 120
IKFQVWDLGGQTSIRPYWRCYFPNT+A+IYVVDSSDTDR+ A+EEFHAILEEEEL+GAV
Sbjct: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTDRLVVAREEFHAILEEEELRGAV 120
Query: 121 ALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180
AL+FANKQDLPGALDDAAV+EALELHKIKNRQWAIFK AIKGEGLFEG+DWLSNTLKSG
Sbjct: 121 ALVFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKASAIKGEGLFEGLDWLSNTLKSG 180
Query: 181 G 181
G
Sbjct: 181 G 181
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225446168|ref|XP_002277581.1| PREDICTED: ADP-ribosylation factor 1 [Vitis vinifera] gi|297735327|emb|CBI17767.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 355 bits (910), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 167/181 (92%), Positives = 177/181 (97%)
Query: 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MGI+F+RMFSSLFGN+EARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN
Sbjct: 1 MGILFTRMFSSLFGNREARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV 120
IKFQVWDLGGQTSIRPYWRCYFPNT+A+IYVVDSSDTDR+ AK+EFHAIL+EEELKGAV
Sbjct: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTDRLVIAKDEFHAILQEEELKGAV 120
Query: 121 ALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180
LIFANKQDLPGALDDAAV+EALELHKIKNRQWAIFKT AIKGEGLFEG+DWLSNTLKSG
Sbjct: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSG 180
Query: 181 G 181
G
Sbjct: 181 G 181
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225430573|ref|XP_002263625.1| PREDICTED: ADP-ribosylation factor 1 [Vitis vinifera] gi|296082183|emb|CBI21188.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 354 bits (908), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 165/181 (91%), Positives = 177/181 (97%)
Query: 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MGI+F+RMFSS+FGN+EARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN
Sbjct: 1 MGILFTRMFSSVFGNREARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV 120
IKFQVWDLGGQTSIRPYWRCYFPNT+A+IYVVDSSDTDRI AK+EFHAILEEEELKGA+
Sbjct: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTDRIVIAKDEFHAILEEEELKGAI 120
Query: 121 ALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180
LIFANKQDLPGALDDAA++EALELHKIKNRQWAIFKTCAIKGEGL+EG+DWLSN LKSG
Sbjct: 121 VLIFANKQDLPGALDDAALTEALELHKIKNRQWAIFKTCAIKGEGLYEGLDWLSNILKSG 180
Query: 181 G 181
G
Sbjct: 181 G 181
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297802862|ref|XP_002869315.1| ADP-ribosylation factor 3 [Arabidopsis lyrata subsp. lyrata] gi|297315151|gb|EFH45574.1| ADP-ribosylation factor 3 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 353 bits (907), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 166/180 (92%), Positives = 177/180 (98%)
Query: 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MGI+F+++FSS+FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN
Sbjct: 1 MGIVFTKLFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV 120
IKFQVWDLGGQTSIRPYWRCYFPNT+AVIYVVDSSDTDRI AKEEFHAILEEEELKGA+
Sbjct: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEEELKGAM 120
Query: 121 ALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180
LIFANKQDLPGALDDAAV+EALELHKIK+RQWAIFKTCA+KGEGLFEG+DWLSNTLKSG
Sbjct: 121 VLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTLKSG 180
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224143382|ref|XP_002324937.1| predicted protein [Populus trichocarpa] gi|118488981|gb|ABK96298.1| unknown [Populus trichocarpa x Populus deltoides] gi|222866371|gb|EEF03502.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 353 bits (907), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 167/181 (92%), Positives = 176/181 (97%)
Query: 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG++FSRMFSSLFGN+EARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN
Sbjct: 1 MGLLFSRMFSSLFGNQEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV 120
IKFQVWDLGGQTSIRPYWRCYFPNT+AVIYVVDSSDT+RI AKEEFH+ILEEEELKGAV
Sbjct: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTERIGIAKEEFHSILEEEELKGAV 120
Query: 121 ALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180
LIFANKQDLPGALDDAAV+EALELHKIK+RQWAIFK CA KGEGLFEG+DWLSNTLKSG
Sbjct: 121 VLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKACATKGEGLFEGLDWLSNTLKSG 180
Query: 181 G 181
G
Sbjct: 181 G 181
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356562475|ref|XP_003549496.1| PREDICTED: ADP-ribosylation factor 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 353 bits (906), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 167/181 (92%), Positives = 176/181 (97%)
Query: 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MGI+F+++FSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN
Sbjct: 1 MGIVFTKLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV 120
IKFQVWDLGGQTSIRPYWRCYFPNT+A+IYVVDSSD DR+ AKEEFHAILEEEELKGAV
Sbjct: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDVDRLVIAKEEFHAILEEEELKGAV 120
Query: 121 ALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180
LIFANKQDLPGALDDAAV+EALELHKIKNRQWAIFKT AIKGEGLFEG+DWLSNTLKSG
Sbjct: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSG 180
Query: 181 G 181
G
Sbjct: 181 G 181
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224117610|ref|XP_002331679.1| predicted protein [Populus trichocarpa] gi|222874098|gb|EEF11229.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 352 bits (904), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 166/181 (91%), Positives = 176/181 (97%)
Query: 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MGI FS+MFSS+FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN
Sbjct: 1 MGIFFSKMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV 120
IKFQVWDLGGQTSIRPYWRCYFPNT+A+IYVVDSSDTDR+ AK+EFHAILEEEEL+GAV
Sbjct: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTDRLVIAKDEFHAILEEEELRGAV 120
Query: 121 ALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180
LI+ANKQDLPGALDDAAV+EALELHKIKNRQWAIFKT AIKGEGLFEG+DWLSNTLKSG
Sbjct: 121 VLIYANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSG 180
Query: 181 G 181
G
Sbjct: 181 G 181
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358249126|ref|NP_001239997.1| uncharacterized protein LOC100815426 [Glycine max] gi|255644587|gb|ACU22796.1| unknown [Glycine max] gi|255646651|gb|ACU23799.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 352 bits (904), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 166/181 (91%), Positives = 176/181 (97%)
Query: 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG++F+++FSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN
Sbjct: 1 MGLVFTKLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV 120
IKFQVWDLGGQTSIRPYWRCYFPNT+A+IYVVDSSD DR+ AKEEFHAILEEEELKGAV
Sbjct: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDVDRLVIAKEEFHAILEEEELKGAV 120
Query: 121 ALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180
LIFANKQDLPGALDDAAV+EALELHKIKNRQWAIFKT AIKGEGLFEG+DWLSNTLKSG
Sbjct: 121 VLIFANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSG 180
Query: 181 G 181
G
Sbjct: 181 G 181
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 182 | ||||||
| TAIR|locus:2827399 | 182 | ARF3 "ADP-ribosylation factor | 0.989 | 0.989 | 0.877 | 2.2e-82 | |
| DICTYBASE|DDB_G0288163 | 183 | arl1 "ARF-like protein" [Dicty | 0.994 | 0.989 | 0.635 | 2.1e-61 | |
| UNIPROTKB|E1BVB0 | 181 | ARL1 "Uncharacterized protein" | 0.983 | 0.988 | 0.642 | 1.1e-57 | |
| UNIPROTKB|B5FY69 | 181 | B5FY69 "Putative ADP-ribosylat | 0.983 | 0.988 | 0.642 | 1.1e-57 | |
| MGI|MGI:99436 | 181 | Arl1 "ADP-ribosylation factor- | 0.983 | 0.988 | 0.636 | 2.2e-57 | |
| RGD|621326 | 181 | Arl1 "ADP-ribosylation factor- | 0.983 | 0.988 | 0.636 | 2.2e-57 | |
| UNIPROTKB|P61212 | 181 | Arl1 "ADP-ribosylation factor- | 0.983 | 0.988 | 0.636 | 2.2e-57 | |
| ZFIN|ZDB-GENE-040718-175 | 181 | arl1 "ADP-ribosylation factor- | 0.983 | 0.988 | 0.636 | 2.2e-57 | |
| UNIPROTKB|B5XET7 | 181 | ARL1 "ADP-ribosylation factor- | 0.983 | 0.988 | 0.636 | 2.8e-57 | |
| UNIPROTKB|C1BXG7 | 181 | ARL1 "ADP-ribosylation factor- | 0.983 | 0.988 | 0.636 | 2.8e-57 |
| TAIR|locus:2827399 ARF3 "ADP-ribosylation factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 826 (295.8 bits), Expect = 2.2e-82, P = 2.2e-82
Identities = 158/180 (87%), Positives = 166/180 (92%)
Query: 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MGI+F+RMFSS+FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN
Sbjct: 1 MGILFTRMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAV 120
IKFQVWDLGGQTSIRPYWRCYFPNT+AVIYVVDSSDTDRI AK LKGAV
Sbjct: 61 IKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEDELKGAV 120
Query: 121 ALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180
LIFANKQDLPGALDDAAV+EALELHKIK+RQWAIFKTCA+KGEGLFEG+DWLSNTLKSG
Sbjct: 121 VLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTLKSG 180
|
|
| DICTYBASE|DDB_G0288163 arl1 "ARF-like protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
Identities = 115/181 (63%), Positives = 140/181 (77%)
Query: 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG +FS +F LFGNK+ RIL+LGLD+AGKTTILY+LQ GEV++TIPTIGFNVE++ Y N
Sbjct: 1 MGNLFSSVFFKLFGNKDVRILILGLDSAGKTTILYKLQCGEVLTTIPTIGFNVESITYKN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAV 120
I+F +WDLGGQ++IRPYWRCY+PNT A+IYVVDSSD DR+ A L+
Sbjct: 61 IRFFLWDLGGQSAIRPYWRCYYPNTNAIIYVVDSSDPDRLGIANEELVAMLSEEELRTTP 120
Query: 121 ALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180
L+FANKQDLPGAL DA VSE L+L +KNRQWAIFKT AI G G++EG+DWL N + G
Sbjct: 121 LLVFANKQDLPGALSDAQVSEGLKLSSLKNRQWAIFKTSAINGVGIYEGLDWLVNVISGG 180
Query: 181 G 181
G
Sbjct: 181 G 181
|
|
| UNIPROTKB|E1BVB0 ARL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
Identities = 115/179 (64%), Positives = 135/179 (75%)
Query: 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG FS +FSSLFG +E RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVETV Y N
Sbjct: 1 MGGFFSTIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAV 120
+KFQVWDLGGQTSIRPYWRCY+ NT+AVIYVVDS D DRI T+K LK A+
Sbjct: 61 LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGTSKSELVAMLEEEELKKAI 120
Query: 121 ALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
++FANKQD+ A+ ++ AL L +K+R+W IFKT A KG GL E M+WL LKS
Sbjct: 121 LVVFANKQDMEQAMTPTEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVEALKS 179
|
|
| UNIPROTKB|B5FY69 B5FY69 "Putative ADP-ribosylation factor-like 1" [Taeniopygia guttata (taxid:59729)] | Back alignment and assigned GO terms |
|---|
Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
Identities = 115/179 (64%), Positives = 135/179 (75%)
Query: 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG FS +FSSLFG +E RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVETV Y N
Sbjct: 1 MGGFFSTIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAV 120
+KFQVWDLGGQTSIRPYWRCY+ NT+AVIYVVDS D DRI T+K LK A+
Sbjct: 61 LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGTSKSELVAMLEEEELKKAI 120
Query: 121 ALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
++FANKQD+ A+ ++ AL L +K+R+W IFKT A KG GL E M+WL LKS
Sbjct: 121 LVVFANKQDMEQAMTPTEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVEALKS 179
|
|
| MGI|MGI:99436 Arl1 "ADP-ribosylation factor-like 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
Identities = 114/179 (63%), Positives = 136/179 (75%)
Query: 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG FS +FSSLFG +E RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVETV Y N
Sbjct: 1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAV 120
+KFQVWDLGGQTSIRPYWRCY+ NT+AVIYVVDS D DRI +K L+ A+
Sbjct: 61 LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI 120
Query: 121 ALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
++FANKQD+ A+ + ++ AL L +K+R+W IFKT A KG GL E M+WL TLKS
Sbjct: 121 LVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 179
|
|
| RGD|621326 Arl1 "ADP-ribosylation factor-like 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
Identities = 114/179 (63%), Positives = 136/179 (75%)
Query: 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG FS +FSSLFG +E RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVETV Y N
Sbjct: 1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAV 120
+KFQVWDLGGQTSIRPYWRCY+ NT+AVIYVVDS D DRI +K L+ A+
Sbjct: 61 LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI 120
Query: 121 ALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
++FANKQD+ A+ + ++ AL L +K+R+W IFKT A KG GL E M+WL TLKS
Sbjct: 121 LVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 179
|
|
| UNIPROTKB|P61212 Arl1 "ADP-ribosylation factor-like protein 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
Identities = 114/179 (63%), Positives = 136/179 (75%)
Query: 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG FS +FSSLFG +E RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVETV Y N
Sbjct: 1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAV 120
+KFQVWDLGGQTSIRPYWRCY+ NT+AVIYVVDS D DRI +K L+ A+
Sbjct: 61 LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI 120
Query: 121 ALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
++FANKQD+ A+ + ++ AL L +K+R+W IFKT A KG GL E M+WL TLKS
Sbjct: 121 LVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 179
|
|
| ZFIN|ZDB-GENE-040718-175 arl1 "ADP-ribosylation factor-like 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
Identities = 114/179 (63%), Positives = 135/179 (75%)
Query: 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG FS +FS LFG +E RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVETV Y N
Sbjct: 1 MGGFFSSLFSGLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAV 120
+KFQVWDLGGQTSIRPYWRCY+ NT+AVIYVVDSSD DR+ +K LK A+
Sbjct: 61 LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSSDRDRMGISKSELVAMLEEEELKKAI 120
Query: 121 ALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
++FANKQD+ A+ V+ AL L +K+R+W IFKT A KG GL E M+WL +LKS
Sbjct: 121 LVVFANKQDMEQAMTPTEVANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVESLKS 179
|
|
| UNIPROTKB|B5XET7 ARL1 "ADP-ribosylation factor-like protein 1" [Salmo salar (taxid:8030)] | Back alignment and assigned GO terms |
|---|
Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
Identities = 114/179 (63%), Positives = 135/179 (75%)
Query: 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG FS +FS LFG +E RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVETV Y N
Sbjct: 1 MGGWFSSLFSGLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAV 120
+KFQVWDLGGQTSIRPYWRCY+ NT+AVIYVVDSSD DR+ +K LK A+
Sbjct: 61 LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSSDRDRMGISKSELVAMLEEEELKKAI 120
Query: 121 ALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
++FANKQD+ A+ A V+ +L L +K+R+W IFKT A KG GL E M+WL LKS
Sbjct: 121 LVVFANKQDMEQAMTPAEVANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVEALKS 179
|
|
| UNIPROTKB|C1BXG7 ARL1 "ADP-ribosylation factor-like protein 1" [Esox lucius (taxid:8010)] | Back alignment and assigned GO terms |
|---|
Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
Identities = 114/179 (63%), Positives = 135/179 (75%)
Query: 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG FS +FS LFG +E RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVETV Y N
Sbjct: 1 MGGWFSSLFSGLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAV 120
+KFQVWDLGGQTSIRPYWRCY+ NT+AVIYVVDSSD DR+ +K LK A+
Sbjct: 61 LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSSDRDRMGISKSELVAMLEEEELKKAI 120
Query: 121 ALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
++FANKQD+ A+ A V+ +L L +K+R+W IFKT A KG GL E M+WL LKS
Sbjct: 121 LVVFANKQDMEQAMTPAEVANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVEALKS 179
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O48920 | ARF_VIGUN | No assigned EC number | 0.5921 | 0.9835 | 0.9889 | N/A | no |
| P51644 | ARF4_XENLA | No assigned EC number | 0.5932 | 0.9725 | 0.9833 | N/A | no |
| P51643 | ARF1_XENLA | No assigned EC number | 0.5921 | 0.9835 | 0.9889 | N/A | no |
| P91924 | ARF_DUGJA | No assigned EC number | 0.5865 | 0.9835 | 0.9781 | N/A | no |
| Q8BSL7 | ARF2_MOUSE | No assigned EC number | 0.5921 | 0.9835 | 0.9889 | yes | no |
| P61210 | ARF1_LOCMI | No assigned EC number | 0.6055 | 0.9890 | 0.9890 | N/A | no |
| P84082 | ARF2_RAT | No assigned EC number | 0.5921 | 0.9835 | 0.9889 | yes | no |
| P84081 | ARF2_BOVIN | No assigned EC number | 0.5921 | 0.9835 | 0.9889 | yes | no |
| Q5R5P7 | ARF3_PONAB | No assigned EC number | 0.5810 | 0.9835 | 0.9889 | yes | no |
| P84080 | ARF1_BOVIN | No assigned EC number | 0.5865 | 0.9835 | 0.9889 | yes | no |
| P22274 | ARF_CANAL | No assigned EC number | 0.6057 | 0.9615 | 0.9776 | N/A | no |
| P51822 | ARF1_DAUCA | No assigned EC number | 0.5977 | 0.9835 | 0.9889 | N/A | no |
| P51821 | ARF1_CHLRE | No assigned EC number | 0.5988 | 0.9725 | 0.9779 | N/A | no |
| P36579 | ARF1_SCHPO | No assigned EC number | 0.5865 | 0.9835 | 0.9944 | yes | no |
| P51824 | ARF1_SOLTU | No assigned EC number | 0.5921 | 0.9835 | 0.9086 | N/A | no |
| P84077 | ARF1_HUMAN | No assigned EC number | 0.5865 | 0.9835 | 0.9889 | yes | no |
| Q96361 | ARF1_BRARP | No assigned EC number | 0.9388 | 0.9890 | 0.9890 | N/A | no |
| P25160 | ARL1_DROME | No assigned EC number | 0.6666 | 0.9395 | 0.95 | yes | no |
| P38116 | ARL1_YEAST | No assigned EC number | 0.6424 | 0.9780 | 0.9726 | yes | no |
| P84079 | ARF1_RAT | No assigned EC number | 0.5865 | 0.9835 | 0.9889 | yes | no |
| P40940 | ARF3_ARATH | No assigned EC number | 0.9333 | 0.9890 | 0.9890 | yes | no |
| P61204 | ARF3_HUMAN | No assigned EC number | 0.5810 | 0.9835 | 0.9889 | yes | no |
| P61207 | ARF3_TAKRU | No assigned EC number | 0.5810 | 0.9835 | 0.9889 | N/A | no |
| Q75A26 | ARF_ASHGO | No assigned EC number | 0.6089 | 0.9835 | 0.9889 | yes | no |
| Q61LA8 | ARF12_CAEBR | No assigned EC number | 0.6033 | 0.9835 | 0.9889 | N/A | no |
| P49076 | ARF_MAIZE | No assigned EC number | 0.5810 | 0.9835 | 0.9889 | N/A | no |
| Q4R5P2 | ARF1_MACFA | No assigned EC number | 0.5865 | 0.9835 | 0.9889 | N/A | no |
| P34727 | ARF_AJECA | No assigned EC number | 0.5690 | 0.9945 | 0.9890 | N/A | no |
| O48649 | ARF1_SALBA | No assigned EC number | 0.5865 | 0.9835 | 0.9889 | N/A | no |
| P84078 | ARF1_MOUSE | No assigned EC number | 0.5865 | 0.9835 | 0.9889 | yes | no |
| O23778 | ARF1_CATRO | No assigned EC number | 0.5875 | 0.9725 | 0.9779 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 182 | |||
| cd04151 | 158 | cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | 1e-115 | |
| pfam00025 | 174 | pfam00025, Arf, ADP-ribosylation factor family | 1e-110 | |
| cd00878 | 158 | cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf | 6e-92 | |
| PTZ00133 | 182 | PTZ00133, PTZ00133, ADP-ribosylation factor; Provi | 2e-89 | |
| cd04150 | 159 | cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A | 6e-88 | |
| smart00177 | 175 | smart00177, ARF, ARF-like small GTPases; ARF, ADP- | 8e-88 | |
| cd04149 | 168 | cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | 8e-88 | |
| PLN00223 | 181 | PLN00223, PLN00223, ADP-ribosylation factor; Provi | 1e-87 | |
| cd04153 | 174 | cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) | 9e-85 | |
| cd04154 | 173 | cd04154, Arl2, Arf-like 2 (Arl2) GTPase | 7e-76 | |
| cd04155 | 174 | cd04155, Arl3, Arf-like 3 (Arl3) GTPase | 1e-72 | |
| cd04156 | 160 | cd04156, ARLTS1, Arf-like tumor suppressor gene 1 | 7e-59 | |
| cd04158 | 169 | cd04158, ARD1, (ADP-ribosylation factor domain pro | 2e-58 | |
| cd04152 | 183 | cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) | 1e-54 | |
| cd00879 | 191 | cd00879, Sar1, Sar1 is an essential component of C | 1e-53 | |
| cd04157 | 162 | cd04157, Arl6, Arf-like 6 (Arl6) GTPase | 5e-53 | |
| cd04159 | 159 | cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl | 6e-43 | |
| cd04160 | 168 | cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | 8e-43 | |
| smart00178 | 184 | smart00178, SAR, Sar1p-like members of the Ras-fam | 9e-35 | |
| cd04162 | 164 | cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp | 2e-32 | |
| cd04161 | 167 | cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A | 3e-32 | |
| COG1100 | 219 | COG1100, COG1100, GTPase SAR1 and related small G | 2e-23 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 2e-20 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 9e-19 | |
| cd04105 | 202 | cd04105, SR_beta, Signal recognition particle rece | 5e-14 | |
| COG2229 | 187 | COG2229, COG2229, Predicted GTPase [General functi | 6e-14 | |
| pfam00503 | 329 | pfam00503, G-alpha, G-protein alpha subunit | 9e-11 | |
| pfam04670 | 230 | pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserve | 6e-09 | |
| pfam00071 | 162 | pfam00071, Ras, Ras family | 7e-09 | |
| cd04115 | 170 | cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu | 9e-09 | |
| cd00154 | 159 | cd00154, Rab, Ras-related in brain (Rab) family of | 2e-08 | |
| cd01860 | 163 | cd01860, Rab5_related, Rab-related GTPase family i | 6e-08 | |
| pfam09439 | 181 | pfam09439, SRPRB, Signal recognition particle rece | 1e-07 | |
| cd01863 | 161 | cd01863, Rab18, Rab GTPase family 18 (Rab18) | 7e-07 | |
| cd04110 | 199 | cd04110, Rab35, Rab GTPase family 35 (Rab35) | 1e-06 | |
| pfam08477 | 116 | pfam08477, Miro, Miro-like protein | 1e-06 | |
| cd09914 | 161 | cd09914, RocCOR, Ras of complex proteins (Roc) C-t | 2e-06 | |
| smart00175 | 164 | smart00175, RAB, Rab subfamily of small GTPases | 4e-06 | |
| cd01864 | 165 | cd01864, Rab19, Rab GTPase family 19 (Rab19) | 6e-06 | |
| cd01869 | 166 | cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t | 6e-06 | |
| cd04112 | 191 | cd04112, Rab26, Rab GTPase family 26 (Rab26) | 9e-06 | |
| cd01898 | 170 | cd01898, Obg, Obg GTPase | 2e-05 | |
| PLN03118 | 211 | PLN03118, PLN03118, Rab family protein; Provisiona | 2e-05 | |
| smart00275 | 342 | smart00275, G_alpha, G protein alpha subunit | 3e-05 | |
| cd04126 | 220 | cd04126, Rab20, Rab GTPase family 20 (Rab20) | 3e-05 | |
| cd04114 | 169 | cd04114, Rab30, Rab GTPase family 30 (Rab30) | 3e-05 | |
| cd04108 | 170 | cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3 | 4e-05 | |
| cd00066 | 315 | cd00066, G-alpha, Alpha subunit of G proteins (gua | 5e-05 | |
| cd01867 | 167 | cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie | 5e-05 | |
| cd04117 | 164 | cd04117, Rab15, Rab GTPase family 15 (Rab15) | 7e-05 | |
| cd04111 | 211 | cd04111, Rab39, Rab GTPase family 39 (Rab39) | 9e-05 | |
| cd04113 | 161 | cd04113, Rab4, Rab GTPase family 4 (Rab4) | 1e-04 | |
| cd01865 | 165 | cd01865, Rab3, Rab GTPase family 3 contains Rab3A, | 2e-04 | |
| cd04109 | 213 | cd04109, Rab28, Rab GTPase family 28 (Rab28) | 2e-04 | |
| cd04122 | 166 | cd04122, Rab14, Rab GTPase family 14 (Rab14) | 0.001 | |
| cd01861 | 161 | cd01861, Rab6, Rab GTPase family 6 (Rab6) | 0.002 | |
| cd09915 | 175 | cd09915, Rag, Rag GTPase subfamily of Ras-related | 0.002 | |
| cd01868 | 165 | cd01868, Rab11_like, Rab GTPase family 11 (Rab11)- | 0.002 | |
| PRK12297 | 424 | PRK12297, obgE, GTPase CgtA; Reviewed | 0.002 | |
| cd00877 | 166 | cd00877, Ran, Ras-related nuclear proteins (Ran)/T | 0.003 | |
| cd04127 | 180 | cd04127, Rab27A, Rab GTPase family 27a (Rab27a) | 0.003 | |
| cd04123 | 162 | cd04123, Rab21, Rab GTPase family 21 (Rab21) | 0.003 | |
| PTZ00132 | 215 | PTZ00132, PTZ00132, GTP-binding nuclear protein Ra | 0.004 |
| >gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | Back alignment and domain information |
|---|
Score = 322 bits (827), Expect = e-115
Identities = 118/158 (74%), Positives = 136/158 (86%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW 78
RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVETV Y N+KFQVWDLGGQTSIRPYW
Sbjct: 1 RILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYW 60
Query: 79 RCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAA 138
RCY+ NT+A+IYVVDS+D DR+ +K E HA+LEEEELK AV L+FANKQD+PGAL +A
Sbjct: 61 RCYYSNTDAIIYVVDSTDRDRLGISKSELHAMLEEEELKDAVLLVFANKQDMPGALSEAE 120
Query: 139 VSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNT 176
V+E L L ++K+R W IFKT A KGEGL EGMDWL NT
Sbjct: 121 VAEKLGLSELKDRTWQIFKTSATKGEGLDEGMDWLVNT 158
|
Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158 |
| >gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family | Back alignment and domain information |
|---|
Score = 312 bits (801), Expect = e-110
Identities = 114/174 (65%), Positives = 139/174 (79%), Gaps = 1/174 (0%)
Query: 5 FSRMFSSLFG-NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKF 63
F + + LFG NKE RIL+LGLDNAGKTTILY+L++GE+V+TIPTIGFNVETV Y N+KF
Sbjct: 1 FLSILAKLFGWNKEMRILILGLDNAGKTTILYKLKLGEIVTTIPTIGFNVETVTYKNVKF 60
Query: 64 QVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALI 123
VWD+GGQ S+RP WR YFPNT+AVI+VVDS+D DRI+ AKEE HA+L EEEL A LI
Sbjct: 61 TVWDVGGQESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLI 120
Query: 124 FANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177
ANKQDLPGA+ +A + E L LH++K+R W I A+ GEGL EG+DWLSN +
Sbjct: 121 LANKQDLPGAMSEAEIRELLGLHELKDRPWEIQGCSAVTGEGLDEGLDWLSNYI 174
|
Pfam combines a number of different Prosite families together. Length = 174 |
| >gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases | Back alignment and domain information |
|---|
Score = 264 bits (677), Expect = 6e-92
Identities = 99/157 (63%), Positives = 122/157 (77%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW 78
RIL+LGLD AGKTTILY+L++GEVV+TIPTIGFNVETV+Y N+KF VWD+GGQ IRP W
Sbjct: 1 RILMLGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVKFTVWDVGGQDKIRPLW 60
Query: 79 RCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAA 138
+ Y+ NT+ +I+VVDSSD +RI+ AK E H +L EEELKGA LI ANKQDLPGAL ++
Sbjct: 61 KHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILANKQDLPGALTESE 120
Query: 139 VSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175
+ E L L IK R+W I A+ G+GL EG+DWL
Sbjct: 121 LIELLGLESIKGRRWHIQPCSAVTGDGLDEGLDWLIE 157
|
Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158 |
| >gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 259 bits (662), Expect = 2e-89
Identities = 103/179 (57%), Positives = 133/179 (74%)
Query: 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG+ S F SLFG KE RIL++GLD AGKTTILY+L++GEVV+TIPTIGFNVETV+Y N
Sbjct: 1 MGLWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV 120
+KF +WD+GGQ +RP WR Y+ NT +I+VVDS+D +RI A+EE +L E+EL+ AV
Sbjct: 61 LKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAV 120
Query: 121 ALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
L+FANKQDLP A+ V+E L LH ++ R W I CA +GL+EG+DWLS +K
Sbjct: 121 LLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIKK 179
|
Length = 182 |
| >gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5) | Back alignment and domain information |
|---|
Score = 254 bits (651), Expect = 6e-88
Identities = 98/158 (62%), Positives = 125/158 (79%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW 78
RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ IRP W
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 61
Query: 79 RCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAA 138
R YF NT+ +I+VVDS+D +RI A+EE +L E+EL+ AV L+FANKQDLP A+ A
Sbjct: 62 RHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAE 121
Query: 139 VSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNT 176
V++ L LH ++NR W I TCA G+GL+EG+DWLSN
Sbjct: 122 VTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNN 159
|
The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159 |
| >gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Score = 254 bits (651), Expect = 8e-88
Identities = 108/175 (61%), Positives = 136/175 (77%)
Query: 5 FSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQ 64
++FS LFGNKE RIL++GLD AGKTTILY+L++GE V+TIPTIGFNVETV Y NI F
Sbjct: 1 MGKLFSKLFGNKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFT 60
Query: 65 VWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIF 124
VWD+GGQ IRP WR Y+ NT+ +I+VVDS+D DRI A+EE H +L E+EL+ AV L+F
Sbjct: 61 VWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVF 120
Query: 125 ANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
ANKQDLP A+ A ++E L LH I++R W I TCA G+GL+EG+ WLSN LK+
Sbjct: 121 ANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNLKN 175
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175 |
| >gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | Back alignment and domain information |
|---|
Score = 254 bits (650), Expect = 8e-88
Identities = 94/167 (56%), Positives = 127/167 (76%)
Query: 9 FSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDL 68
S LFGNKE RIL+LGLD AGKTTILY+L++G+ V+TIPT+GFNVETV Y N+KF VWD+
Sbjct: 1 LSKLFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDV 60
Query: 69 GGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQ 128
GGQ IRP WR Y+ T+ +I+VVDS+D DRI A++E H I+ + E++ A+ L+FANKQ
Sbjct: 61 GGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQ 120
Query: 129 DLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175
DLP A+ + E L L +I++R W + +CA G+GL+EG+ WLS+
Sbjct: 121 DLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167
|
Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168 |
| >gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 254 bits (650), Expect = 1e-87
Identities = 106/179 (59%), Positives = 141/179 (78%)
Query: 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG+ F+++FS LF KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y N
Sbjct: 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV 120
I F VWD+GGQ IRP WR YF NT+ +I+VVDS+D DR+ A++E H +L E+EL+ AV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 121 ALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
L+FANKQDLP A++ A +++ L LH ++ R W I TCA GEGL+EG+DWLSN + +
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179
|
Length = 181 |
| >gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases | Back alignment and domain information |
|---|
Score = 246 bits (631), Expect = 9e-85
Identities = 88/174 (50%), Positives = 125/174 (71%)
Query: 3 IMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIK 62
++FS ++S F KE +++++GLDNAGKTTILY+ +GEVV T PTIG NVE + Y NI+
Sbjct: 1 LLFSSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIR 60
Query: 63 FQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVAL 122
F +WD+GGQ S+R W Y+ NT+AVI V+DS+D +R+ KEE + +L E+L+ AV L
Sbjct: 61 FLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLL 120
Query: 123 IFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNT 176
+ ANKQDL GA+ A +SE+L L I++ W I CA+ GEGL EG+DW+++
Sbjct: 121 VLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIASR 174
|
Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174 |
| >gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase | Back alignment and domain information |
|---|
Score = 224 bits (573), Expect = 7e-76
Identities = 90/161 (55%), Positives = 115/161 (71%), Gaps = 2/161 (1%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTI-PTIGFNVETVQYNNIKFQVWDLGGQTSI 74
+E RIL+LGLDNAGKTTIL + GE +STI PT+GFN++T++YN K +WD+GGQ S+
Sbjct: 13 REMRILMLGLDNAGKTTILKKFN-GEDISTISPTLGFNIKTLEYNGYKLNIWDVGGQKSL 71
Query: 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL 134
R YWR YF +T+A+I+VVDSSD R++ K E +L EE L GA LIFANKQDLPGAL
Sbjct: 72 RSYWRNYFESTDALIWVVDSSDRARLEDCKRELQKLLVEERLAGATLLIFANKQDLPGAL 131
Query: 135 DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175
+ E LEL IK+ W IF A+ GE L +G+DWL +
Sbjct: 132 SPEEIREVLELDSIKSHHWRIFGCSAVTGENLLDGIDWLVD 172
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173 |
| >gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase | Back alignment and domain information |
|---|
Score = 216 bits (552), Expect = 1e-72
Identities = 84/159 (52%), Positives = 107/159 (67%)
Query: 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74
+E RIL+LGLDNAGKTTIL +L ++ PT GFN++ VQ + K VWD+GGQ I
Sbjct: 13 RQEVRILLLGLDNAGKTTILKQLASEDISHITPTQGFNIKNVQADGFKLNVWDIGGQRKI 72
Query: 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL 134
RPYWR YF NT+ +IYV+DS+D R + A +E +LEEE+L G L+FANKQDL A
Sbjct: 73 RPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVLVFANKQDLLTAA 132
Query: 135 DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWL 173
V+EAL LH I++R W I A GEGL EGM+W+
Sbjct: 133 PAEEVAEALNLHDIRDRSWHIQACSAKTGEGLQEGMNWV 171
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174 |
| >gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11) | Back alignment and domain information |
|---|
Score = 180 bits (459), Expect = 7e-59
Identities = 70/154 (45%), Positives = 104/154 (67%), Gaps = 2/154 (1%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYN-NIKFQVWDLGGQTSIRPY 77
++L+LGLD+AGK+T+LY+L+ E+V+TIPT+GFNVE +Q ++ VWD+GGQ +R
Sbjct: 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTV 60
Query: 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDA 137
W+CY NT+ ++YVVDSSD R+ +++E IL+ E +KG ++ ANKQDLPGAL
Sbjct: 61 WKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAE 120
Query: 138 AVSEALELHKI-KNRQWAIFKTCAIKGEGLFEGM 170
++ +L K +R W + A+ GEGL E
Sbjct: 121 EITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160 |
| >gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1) | Back alignment and domain information |
|---|
Score = 180 bits (458), Expect = 2e-58
Identities = 85/164 (51%), Positives = 115/164 (70%), Gaps = 1/164 (0%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW 78
R++ LGLD AGKTTIL++L+ E + IPTIGFNVETV+Y N+KF +WD+GG+ +RP W
Sbjct: 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLW 60
Query: 79 RCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAA 138
+ Y+ NT+AV++V+DSS DR+ A E +L E+EL+ A+ LIFANKQD+ GAL
Sbjct: 61 KHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEE 120
Query: 139 VSEALELHKI-KNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSGG 181
++E L LHK+ R W I A G GL+EG+DWLS L + G
Sbjct: 121 MTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVAAG 164
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169 |
| >gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases | Back alignment and domain information |
|---|
Score = 171 bits (434), Expect = 1e-54
Identities = 72/160 (45%), Positives = 104/160 (65%), Gaps = 6/160 (3%)
Query: 20 ILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN-----IKFQVWDLGGQTSI 74
I++LGLD+AGKTT+LYRL+ E V+T+PT GFN E ++ + + F WD+GGQ +
Sbjct: 6 IVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNAKGVTFHFWDVGGQEKL 65
Query: 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL 134
RP W+ Y T+ +++VVDS D +R++ AK E H I + E +G L+ ANKQDLP AL
Sbjct: 66 RPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLVLANKQDLPNAL 125
Query: 135 DDAAVSEALELHKIKN-RQWAIFKTCAIKGEGLFEGMDWL 173
+ V + L LH++ + W + CAI GEGL EG++ L
Sbjct: 126 PVSEVEKLLALHELSSSTPWHVQPACAIIGEGLQEGLEKL 165
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183 |
| >gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats | Back alignment and domain information |
|---|
Score = 168 bits (428), Expect = 1e-53
Identities = 68/184 (36%), Positives = 100/184 (54%), Gaps = 13/184 (7%)
Query: 4 MFSRMFSSL-FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIK 62
F + SSL KEA+I+ LGLDNAGKTT+L+ L+ + +PT+ E + N+K
Sbjct: 5 WFYNVLSSLGLYKKEAKIVFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNVK 64
Query: 63 FQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVAL 122
F +DLGG R W+ YFP + ++++VD++D +R Q +KEE ++L +EEL L
Sbjct: 65 FTTFDLGGHEQARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDEELANVPIL 124
Query: 123 IFANKQDLPGALDDAAVSEALELHK------------IKNRQWAIFKTCAIKGEGLFEGM 170
I NK D PGA+ + + EAL L+ R +F +K +G EG
Sbjct: 125 ILGNKIDKPGAVSEEELREALGLYGTTTGKGGVSLKVSNIRPVEVFMCSVVKRQGYGEGF 184
Query: 171 DWLS 174
WLS
Sbjct: 185 RWLS 188
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191 |
| >gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase | Back alignment and domain information |
|---|
Score = 166 bits (421), Expect = 5e-53
Identities = 69/161 (42%), Positives = 98/161 (60%), Gaps = 4/161 (2%)
Query: 20 ILVLGLDNAGKTTILYRLQMGEVVSTI--PTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77
ILVLGLDN+GKTTI+ +L+ S PT+GFNVE+ + N+ F +D+ GQ R
Sbjct: 2 ILVLGLDNSGKTTIINQLKPSNAQSQNIVPTVGFNVESFKKGNLSFTAFDMSGQGKYRGL 61
Query: 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVA--LIFANKQDLPGALD 135
W Y+ N + +I+V+DSSD R+ AK+E +L ++K L +ANK DLP AL
Sbjct: 62 WEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPDIKHRRIPILFYANKMDLPDALT 121
Query: 136 DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNT 176
+++ L L IK++ W IF + A+ GEGL EG+DWL
Sbjct: 122 AVKITQLLCLENIKDKPWHIFASSALTGEGLDEGVDWLQAQ 162
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162 |
| >gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 6e-43
Identities = 59/155 (38%), Positives = 91/155 (58%), Gaps = 1/155 (0%)
Query: 20 ILVLGLDNAGKTTILYRLQMGE-VVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW 78
I ++GL N+GKTT++ + G+ TIPT+GFN+ V N+ +VWDLGGQ R W
Sbjct: 2 ITLVGLQNSGKTTLVNVIASGQFSEDTIPTVGFNMRKVTKGNVTIKVWDLGGQPRFRSMW 61
Query: 79 RCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAA 138
Y A++YVVD++D ++++ AK E H +LE+ L+G L+ NK DLPGAL
Sbjct: 62 ERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDE 121
Query: 139 VSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWL 173
+ E + L I +R+ + + A + + +DWL
Sbjct: 122 LIEQMNLKSITDREVSCYSISAKEKTNIDIVLDWL 156
|
Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159 |
| >gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 8e-43
Identities = 64/165 (38%), Positives = 93/165 (56%), Gaps = 10/165 (6%)
Query: 20 ILVLGLDNAGKTTILYRLQM-------GEVVSTI-PTIGFNVETVQYNNIKFQVWDLGGQ 71
+L+LGLDNAGKTT L + + G S I PT+G N+ T++ + WDLGGQ
Sbjct: 2 VLILGLDNAGKTTFLEQTKTKFSKNYKGLNPSKITPTVGLNIGTIEVGKARLMFWDLGGQ 61
Query: 72 TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131
+R W Y+ + VIYV+DS+D +R +K F ++ E L+G L+ ANKQDLP
Sbjct: 62 EELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLANKQDLP 121
Query: 132 GALDDAAVSEALE--LHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174
AL A + E + + I R + A++GEG+ EG++WL
Sbjct: 122 DALSVAEIKEVFDDCIALIGRRDCLVQPVSALEGEGVEEGIEWLV 166
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168 |
| >gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 9e-35
Identities = 64/167 (38%), Positives = 86/167 (51%), Gaps = 7/167 (4%)
Query: 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74
NK A+IL LGLDNAGKTT+L+ L+ + PT E + NIKF +DLGG
Sbjct: 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQA 74
Query: 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL 134
R W+ YFP ++Y+VD+ D +R +K E A+L +EEL LI NK D P A
Sbjct: 75 RRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAA 134
Query: 135 DDAAVSEALELH-------KIKNRQWAIFKTCAIKGEGLFEGMDWLS 174
+ + AL L K+ R +F ++ G EG WLS
Sbjct: 135 SEDELRYALGLTNTTTGKGKVGVRPVEVFMCSVVRRMGYGEGFKWLS 181
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. Length = 184 |
| >gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 2e-32
Identities = 53/147 (36%), Positives = 85/147 (57%), Gaps = 8/147 (5%)
Query: 20 ILVLGLDNAGKTTILYRLQMGEVV--STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77
ILVLGLD AGKT++L+ L E S +PT GFN + + ++ ++GG ++R Y
Sbjct: 2 ILVLGLDGAGKTSLLHSL-SSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKY 60
Query: 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEE-ELKGAVALIFANKQDLPGALDD 136
W+ Y ++ +I+VVDS+D++R+ A++E H +L+ +L ++ ANKQDLP A
Sbjct: 61 WKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLP---LVVLANKQDLPAARSV 117
Query: 137 AAVSEALELHKIKN-RQWAIFKTCAIK 162
+ + LEL I R+W + T
Sbjct: 118 QEIHKELELEPIARGRRWILQGTSLDD 144
|
Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164 |
| >gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13 | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 3e-32
Identities = 60/163 (36%), Positives = 86/163 (52%), Gaps = 9/163 (5%)
Query: 20 ILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWR 79
+L +GLDNAGKTT++ LQ PT+GF ++ + + ++DLGG + R W
Sbjct: 2 LLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWV 61
Query: 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAV 139
Y+ +++VVDSSD DR+Q KE +L+ + G L+ ANKQD AL A V
Sbjct: 62 NYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADV 121
Query: 140 SEALELHKIKNRQWA---IFKTCAIKGEG------LFEGMDWL 173
E L L K+ N + I AI+G G + EG+ WL
Sbjct: 122 IEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWL 164
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167 |
| >gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 91.6 bits (227), Expect = 2e-23
Identities = 40/128 (31%), Positives = 51/128 (39%), Gaps = 5/128 (3%)
Query: 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNV----ETVQYNNIKFQVWD 67
KE +I+VLG GKTT+L RL E PTIG NIK Q+WD
Sbjct: 1 LFMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWD 60
Query: 68 LGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANK 127
GQ R Y+ ++ V DS+ + EE+ L E L+ NK
Sbjct: 61 TAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNK 120
Query: 128 QDLPGALD 135
DL
Sbjct: 121 IDLFDEQS 128
|
Length = 219 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 2e-20
Identities = 39/164 (23%), Positives = 65/164 (39%), Gaps = 16/164 (9%)
Query: 21 LVLGLDNAGKTTILYRL--QMGEVVSTIP--TIGFNVETVQY--NNIKFQVWDLGGQTSI 74
+V+G GK+++L L VS +P T +V + +K + D G
Sbjct: 1 VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEF 60
Query: 75 RPYWRC-----YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQD 129
R + ++ VVDS+D + + AK L +E + ++ NK D
Sbjct: 61 GGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEGIP---IILVGNKID 117
Query: 130 LPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWL 173
L + + EL KI +F+ A GEG+ E + L
Sbjct: 118 LLEEREVEELLRLEELAKILGVP--VFEVSAKTGEGVDELFEKL 159
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 9e-19
Identities = 35/157 (22%), Positives = 58/157 (36%), Gaps = 11/157 (7%)
Query: 17 EARILVLGLDNAGKTTILYRL--QMGEVVSTIPTIGFNVET--VQYNN--IKFQVWDLGG 70
E +I+++G N GK+T+L RL + P N T ++ + KF + D G
Sbjct: 1 EIKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAG 60
Query: 71 QTSIRPYWRCYFPNTEAVIYVVDSSDT-DRIQTAKEEFHAILEEEELKGAVALIFANKQD 129
Q R Y+ E+ + V D ++ E+ + G ++ NK D
Sbjct: 61 QEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKID 120
Query: 130 LPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166
L A A K+ I A G+ +
Sbjct: 121 LRDAKLKT--HVAFLFAKLNGE--PIIPLSAETGKNI 153
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP) | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 5e-14
Identities = 43/140 (30%), Positives = 73/140 (52%), Gaps = 11/140 (7%)
Query: 20 ILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNI----KFQVWDLGGQTSIR 75
+L+LG ++GKT + +L G+V ST+ +I NV Y+N K + D+ G +R
Sbjct: 3 VLLLGPSDSGKTALFTKLTTGKVRSTVTSIEPNV-ASFYSNSSKGKKLTLVDVPGHEKLR 61
Query: 76 PYWRCYFPNTE-AVIYVVDSSDTDR-IQTAKEEFHAIL-EEEELKGAVA-LIFANKQDLP 131
Y + A+++VVDS+ + I+ E + IL + E++K + LI NKQDL
Sbjct: 62 DKLLEYLKASLKAIVFVVDSATFQKNIRDVAEFLYDILTDLEKIKNKIPILIACNKQDLF 121
Query: 132 GALDDAAVSEAL--ELHKIK 149
A + E L E++ ++
Sbjct: 122 TAKPAKKIKELLEKEINTLR 141
|
Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202 |
| >gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 6e-14
Identities = 43/189 (22%), Positives = 67/189 (35%), Gaps = 23/189 (12%)
Query: 8 MFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIP-------------TIGFNVE 54
+ S+ E +I+V+G AGKTT + L +V T T+ +
Sbjct: 1 LTSAANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFG 60
Query: 55 TVQYNNIKFQVW--DLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILE 112
+++ + V GQ + W I +VDSS T I
Sbjct: 61 SIELDE-DTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRP---IT-FHAEEIIDF 115
Query: 113 EEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172
++ NKQDL AL + EAL+L + + A +GEG + +D
Sbjct: 116 LTSRNPIPVVVAINKQDLFDALPPEKIREALKLE---LLSVPVIEIDATEGEGARDQLDV 172
Query: 173 LSNTLKSGG 181
L G
Sbjct: 173 LLLKDLLGS 181
|
Length = 187 |
| >gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 9e-11
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 46 IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSD--------- 96
+ T G + +KF+++D+GGQ S R W F + A+I+VV S+
Sbjct: 153 VKTTGIIETKFDFKGLKFRLFDVGGQRSERKKWIHCFEDVTAIIFVVSLSEYDQVLYEDD 212
Query: 97 -TDRIQTAKEEFHAILEEEELKGAVALIFANKQDL 130
T+R++ + F I K ++F NK+DL
Sbjct: 213 STNRLEESLNLFEEICNSPWFKNTPIILFLNKKDL 247
|
G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA. Length = 329 |
| >gnl|CDD|218203 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 6e-09
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 11/104 (10%)
Query: 19 RILVLGLDNAGKTT----ILYRLQMGEVVSTIPTIGFNVETVQYN-NIKFQVWDLGGQTS 73
++L++GL +GK++ I + + TI V++ N+ +WD GQ
Sbjct: 1 KVLLMGLRGSGKSSMRSIIFSNYSPRDTLRLGATIDVEQSHVRFLGNLTLNLWDCPGQDD 60
Query: 74 I-RPYWR----CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILE 112
Y F N +IYV D + + I+E
Sbjct: 61 FMENYLTRQKEHIFSNVGVLIYVFDVESRE-YEEDLATLVKIIE 103
|
GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B. Length = 230 |
| >gnl|CDD|215692 pfam00071, Ras, Ras family | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 7e-09
Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 23/142 (16%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIG--FNVETVQYNN--IKFQVWDLGGQ-- 71
+++++G GK+++L R + IPTIG F +T++ + +K Q+WD GQ
Sbjct: 1 KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60
Query: 72 -TSIRPYWRCYFPNTEAVI--YVVDSSDT-DRIQTAKEEFHAILEEEELKGAVALIFANK 127
++RP Y+ + + Y + S D+ + ++ EE +E ++ NK
Sbjct: 61 FRALRPL---YYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADE----NVPIVLVGNK 113
Query: 128 QDLPGALDDAAVS--EALELHK 147
DL D VS E L K
Sbjct: 114 CDL---EDQRVVSTEEGEALAK 132
|
Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162 |
| >gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 9e-09
Identities = 47/159 (29%), Positives = 64/159 (40%), Gaps = 31/159 (19%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYN--NIKFQVWDLGGQTS 73
+I+V+G N GKT + YR G T TIG F TV+ + IK Q+WD GQ
Sbjct: 4 KIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQER 63
Query: 74 IRP-----YWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAI---LEEEELKGAVALI-- 123
R Y+R N AV++V D T FH++ +EE E +
Sbjct: 64 FRKSMVQHYYR----NVHAVVFVYDV-------TNMASFHSLPSWIEECEQHSLPNEVPR 112
Query: 124 --FANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCA 160
NK DL + V L +F+T A
Sbjct: 113 ILVGNKCDL---REQIQVPTDLAQRFADAHSMPLFETSA 148
|
Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170 |
| >gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 2e-08
Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 31/166 (18%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQ-- 71
+I+++G GKT++L R + + TIG F +T++ + +K Q+WD GQ
Sbjct: 2 KIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQER 61
Query: 72 -TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAI------LEEEELKGAVALIF 124
SI Y+ I V D ++ +E F + L+E ++
Sbjct: 62 FRSITSS---YYRGAHGAILVYDVTN-------RESFENLDKWLNELKEYAPPNIPIILV 111
Query: 125 ANKQDLPGALDDAAVS--EALELHKIKNRQWAIFKTCAIKGEGLFE 168
NK DL D+ VS EA + K + F+T A GE + E
Sbjct: 112 GNKSDLE---DERQVSTEEAQQFAKENGLLF--FETSAKTGENVDE 152
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159 |
| >gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 6e-08
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 17 EARILVLGLDNAGKTTILYRLQMGEVVSTI-PTIG--FNVETVQYNN--IKFQVWDLGGQ 71
+ ++++LG + GK++I+ R E TIG F +TV ++ +KF++WD GQ
Sbjct: 1 QFKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ 60
Query: 72 TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAK---EEFHAILEEEELKGAVALIFANKQ 128
R Y+ A I V D + + + AK +E + +AL NK
Sbjct: 61 ERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIV---IALA-GNKA 116
Query: 129 DL 130
DL
Sbjct: 117 DL 118
|
The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163 |
| >gnl|CDD|204242 pfam09439, SRPRB, Signal recognition particle receptor beta subunit | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-07
Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 10/139 (7%)
Query: 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIK---FQVWDLGGQ 71
+ + +++ GL ++GKT++ L G V T+ + + +Y K F + D G
Sbjct: 1 SSQPAVIIAGLCDSGKTSLFTLLTTGTVKKTVTSQEPSA-AYKYMLHKGFSFTLIDFPGH 59
Query: 72 TSIRPYW---RCYFPNTEAVIYVVDSS-DTDRIQTAKEEFHAILEEEELK--GAVALIFA 125
+R + +++VVDS+ + E + IL EL G LI
Sbjct: 60 VKLRQKLLETIKDSSSLRGIVFVVDSTAFPKEVTDTAEFLYEILSITELLKNGIDILIAC 119
Query: 126 NKQDLPGALDDAAVSEALE 144
NKQ+ A + +ALE
Sbjct: 120 NKQESFTARPPKKIKQALE 138
|
The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane. Length = 181 |
| >gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18) | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 7e-07
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 19/126 (15%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTI-PTIG--FNVETVQY--NNIKFQVWDLGGQTS 73
+IL++G GK+++L R + TIG F V+TV +K +WD GQ
Sbjct: 2 KILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQER 61
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAI---LEEEEL----KGAVALIFAN 126
R Y+ + VI V D T ++ F + L E + AV ++ N
Sbjct: 62 FRTLTSSYYRGAQGVILVYDV-------TRRDTFDNLDTWLNELDTYSTNPDAVKMLVGN 114
Query: 127 KQDLPG 132
K D
Sbjct: 115 KIDKEN 120
|
Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35) | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 1e-06
Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 12/130 (9%)
Query: 7 RMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVV-STIPTIG--FNVETVQYN--NI 61
R + LF ++L++G GK+++L R S I TIG F + TV+ N +
Sbjct: 1 RDYDHLF-----KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERV 55
Query: 62 KFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVA 121
K Q+WD GQ R Y+ T VI V D ++ + K I E+
Sbjct: 56 KLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEI--EQNCDDVCK 113
Query: 122 LIFANKQDLP 131
++ NK D P
Sbjct: 114 VLVGNKNDDP 123
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199 |
| >gnl|CDD|219856 pfam08477, Miro, Miro-like protein | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-06
Identities = 23/116 (19%), Positives = 50/116 (43%), Gaps = 6/116 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTI-----PTIGFNVETVQYNNIKFQVWDLGGQTS 73
+++V+G +GK+++L +L GE T+ + V + +WD GG+
Sbjct: 1 KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIF-ANKQ 128
++ + +A++ V D +D + + + +L G + +I NK
Sbjct: 61 LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVILVGNKL 116
|
Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116 |
| >gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-06
Identities = 34/170 (20%), Positives = 62/170 (36%), Gaps = 19/170 (11%)
Query: 17 EARILVLGLDNAGKTTILYRLQMGEVV--STIPTIGFNVETVQYNN-----IKFQVWDLG 69
EA+++++G GKT++ +L +GE T G NV+ + I+ VWD G
Sbjct: 1 EAKLMLVGQGGVGKTSLCKQL-IGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFG 59
Query: 70 GQTSIRPYWRCYFPNTEAVIYVV-DSSDTDRIQTAKEEFHAILEEEELKGAVALIF--AN 126
GQ + +F + ++ +V D D + I + G V+ +
Sbjct: 60 GQEIYHATHQ-FFLTSRSLYLLVFDLRTGDEVSRVPYWLRQI----KAFGGVSPVILVGT 114
Query: 127 KQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNT 176
D D + + K I G+G+ E ++
Sbjct: 115 HID---ESCDEDILKKALNKKFPAIINDIHFVSCKNGKGIAELKKAIAKE 161
|
RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161 |
| >gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 4e-06
Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 17/137 (12%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
+I+++G GK+++L R G+ TIG F +T++ + +K Q+WD GQ
Sbjct: 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQER 61
Query: 74 IRPYWRCYFPNTEAVIYVVD--SSDT-DRIQTAKEEFHAILEEEELKGAVALIFANKQDL 130
R Y+ + V D + ++ + ++ +E L E V ++ NK DL
Sbjct: 62 FRSITSSYYRGAVGALLVYDITNRESFENLENWLKE----LREYASPNVVIMLVGNKSDL 117
Query: 131 PGALDDAAVS--EALEL 145
+ VS EA
Sbjct: 118 E---EQRQVSREEAEAF 131
|
Rab GTPases are implicated in vesicle trafficking. Length = 164 |
| >gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19) | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 6e-06
Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 18/123 (14%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTI-PTIG--FNVET--VQYNNIKFQVWDLGGQTS 73
+I+++G N GKT ++ R + G TIG F ++T +Q +K Q+WD GQ
Sbjct: 5 KIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 64
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAI---LEEEELKGA---VALIFANK 127
R + Y+ + I D T + F ++ +EE E GA V L+ NK
Sbjct: 65 FRTITQSYYRSANGAIIAYDI-------TRRSSFESVPHWIEEVEKYGASNVVLLLIGNK 117
Query: 128 QDL 130
DL
Sbjct: 118 CDL 120
|
Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1 | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 6e-06
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVV-STIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
++L++G GK+ +L R S I TIG F + T++ + +K Q+WD GQ
Sbjct: 4 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQER 63
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131
R Y+ +I V D +D + K+ I + + L+ NK DL
Sbjct: 64 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEI-DRYASENVNKLLVGNKCDLT 120
|
Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26) | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 9e-06
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 13/123 (10%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVV--STIPTIGFN----VETVQYNNIKFQVWDLGGQT 72
+++++G GKT +L R + G + S I T+G V TV +K Q+WD GQ
Sbjct: 2 KVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQE 61
Query: 73 SIRPYWRCYFPNTEAVIYVVD---SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQD 129
R Y+ + A++ + D S D I+ E + + V ++ NK D
Sbjct: 62 RFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSD----VVIMLLGNKAD 117
Query: 130 LPG 132
+ G
Sbjct: 118 MSG 120
|
Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191 |
| >gnl|CDD|206685 cd01898, Obg, Obg GTPase | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 2e-05
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEE-----EELKGAVALIFANKQDLPGALDDAAV 139
T +++V+D S D E++ I E L ++ NK DL D
Sbjct: 79 TRVLLHVIDLSGEDDP---VEDYETIRNELEAYNPGLAEKPRIVVLNKIDLL---DAEER 132
Query: 140 SEALELHKIKNRQWAIFKTCAIKGEGL 166
E L+ + + +F A+ GEGL
Sbjct: 133 FEKLKELLKELKGKKVFPISALTGEGL 159
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. Length = 170 |
| >gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 2e-05
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE----TVQYNNIKFQVWDLGGQTSI 74
+IL++G GK+++L V PTIG + + TV +K +WD GQ
Sbjct: 16 KILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERF 75
Query: 75 RPYWRCYFPNTEAVIYVVD 93
R Y+ N + +I V D
Sbjct: 76 RTLTSSYYRNAQGIILVYD 94
|
Length = 211 |
| >gnl|CDD|214595 smart00275, G_alpha, G protein alpha subunit | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 3e-05
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Query: 46 IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSD--------- 96
+PT G + F+++D+GGQ S R W F N A+I+ V S+
Sbjct: 169 VPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDE 228
Query: 97 -TDRIQTAKEEFHAILEEEELKGAVALIFANKQDL 130
T+R+Q + F +I ++F NK DL
Sbjct: 229 STNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263
|
Subunit of G proteins that contains the guanine nucleotide binding site. Length = 342 |
| >gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20) | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 3e-05
Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 7/135 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW 78
++++LG N GKT++L+R T+ T+G Q+ +WD G+
Sbjct: 2 KVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLG 61
Query: 79 RCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDL--PGALD- 135
Y AVI D S+ ++ ++ F + + + + + NK DL GAL
Sbjct: 62 SMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTAN-EDCLFAVVGNKLDLTEEGALAG 120
Query: 136 ---DAAVSEALELHK 147
DA + E +
Sbjct: 121 QEKDAGDRVSPEDQR 135
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220 |
| >gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30) | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 3e-05
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 14/121 (11%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIP-----TIG--FNVETVQYNN--IKFQVWDLG 69
+I+++G GKT ++ R G P TIG F ++TV+ IK Q+WD
Sbjct: 9 KIVLIGNAGVGKTCLVRRFTQG----LFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTA 64
Query: 70 GQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQD 129
GQ R + Y+ + A+I D + + + E I E+ + ++ NK D
Sbjct: 65 GQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREI-EQYANNKVITILVGNKID 123
Query: 130 L 130
L
Sbjct: 124 L 124
|
Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169 |
| >gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36) | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 4e-05
Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 10/156 (6%)
Query: 18 ARILVLGLDNAGKTTILYRLQMGEVVSTI-PTIG--FNVETVQYNNIKF--QVWDLGGQT 72
++++V+G + GKT ++ R TIG F +E + + F Q+WD GQ
Sbjct: 1 SKVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQE 60
Query: 73 SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDL-P 131
+ Y+ +A+I V D +D ++ ++ L+E + + + K+DL
Sbjct: 61 RFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSS 120
Query: 132 GALDDAAVSEALELHK-IKNRQWAIFKTCAIKGEGL 166
A +A++L + +K WA+ A+ GE +
Sbjct: 121 PAQYALMEQDAIKLAREMKAEYWAV---SALTGENV 153
|
Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170 |
| >gnl|CDD|206639 cd00066, G-alpha, Alpha subunit of G proteins (guanine nucleotide binding) | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 5e-05
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 46 IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSD--------- 96
+ T G N+KF+++D+GGQ S R W F + A+I+VV S+
Sbjct: 146 VKTTGIIETDFSIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLVEDE 205
Query: 97 -TDRIQTAKEEFHAILEEEELKGAVALIFANKQDL 130
+R+Q + + F +I ++F NK+DL
Sbjct: 206 SVNRMQESLKLFDSICNSRWFANTSIILFLNKKDL 240
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. Length = 315 |
| >gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13) | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 5e-05
Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 9/127 (7%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
++L++G GK+ +L R + I TIG F + T++ + IK Q+WD GQ
Sbjct: 5 KLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQER 64
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133
R Y+ +I V D +D + K I +E + ++ NK D+
Sbjct: 65 FRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNI-DEHASEDVERMLVGNKCDME-- 121
Query: 134 LDDAAVS 140
+ VS
Sbjct: 122 -EKRVVS 127
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167 |
| >gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15) | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 7e-05
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIG--FNVETVQYNNIK--FQVWDLGGQTS 73
R+L++G GKT +L R E S+ I TIG F ++T++ + IK Q+WD GQ
Sbjct: 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQER 61
Query: 74 IRPYWRCYFPNTEAVIYVVDSS 95
+ + Y+ + + V D S
Sbjct: 62 YQTITKQYYRRAQGIFLVYDIS 83
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164 |
| >gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39) | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 9e-05
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEV--VSTIPTIGFN-----VETVQYNNIKFQVWDLGGQ 71
R++V+G GK+++L R G VS PT+G + +E IK Q+WD GQ
Sbjct: 4 RLIVIGDSTVGKSSLLKRFTEGRFAEVSD-PTVGVDFFSRLIEIEPGVRIKLQLWDTAGQ 62
Query: 72 TSIRPYWRCYFPNTEAVIYVVDSSD 96
R R Y+ N+ V+ V D ++
Sbjct: 63 ERFRSITRSYYRNSVGVLLVFDITN 87
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211 |
| >gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4) | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 1e-04
Identities = 41/164 (25%), Positives = 67/164 (40%), Gaps = 27/164 (16%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIP-TIGFN----VETVQYNNIKFQVWDLGGQTS 73
+ L++G GK+ +L++ + TIG V V ++K Q+WD GQ
Sbjct: 2 KFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQER 61
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGA--------VALIFA 125
R R Y+ + V D T++E F+A+ L A V ++
Sbjct: 62 FRSVTRSYYRGAAGALLVYDI-------TSRESFNAL--TNWLTDARTLASPDIVIILVG 112
Query: 126 NKQDLPGALDDAAVSEALELHKIKNRQWAIF-KTCAIKGEGLFE 168
NK+D L+D LE + +F +T A+ GE + E
Sbjct: 113 NKKD----LEDDREVTFLEASRFAQENGLLFLETSALTGENVEE 152
|
Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 2e-04
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
Query: 19 RILVLGLDNAGKTTILYRLQ----MGEVVSTIPTIGFNVETVQYNN--IKFQVWDLGGQT 72
++L++G + GKT+ L+R VST+ I F V+TV N+ IK Q+WD GQ
Sbjct: 3 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTV-GIDFKVKTVYRNDKRIKLQIWDTAGQE 61
Query: 73 SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDL 130
R Y+ I + D ++ + A +++ ++ A ++ NK D+
Sbjct: 62 RYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWSTQIKTYSWDNAQVILVGNKCDM 118
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28) | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 2e-04
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 10/122 (8%)
Query: 19 RILVLGLDNAGKTTILYRL-QMGEVVSTIPTIGFN-----VETVQYNNIKFQVWDLGGQT 72
+I+VLG +GKT+++ R Q G S TIG + + N+ QVWD+GGQ
Sbjct: 2 KIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQQ 61
Query: 73 SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAIL---EEEELKGAVALIFANKQD 129
Y +AV V D +++ + ++ + EE E K + L+ NK D
Sbjct: 62 IGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLV-GNKTD 120
Query: 130 LP 131
L
Sbjct: 121 LE 122
|
Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213 |
| >gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14) | Back alignment and domain information |
|---|
Score = 37.1 bits (86), Expect = 0.001
Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 12/123 (9%)
Query: 21 LVLGLDNAGKTTILYRLQMGEVVSTIP-TIG--FNVETVQYNN--IKFQVWDLGGQTSIR 75
+++G GK+ +L++ + ++ P TIG F ++ N IK Q+WD GQ R
Sbjct: 6 IIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFR 65
Query: 76 PYWRCYFPNTEAVIYVVD---SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132
R Y+ + V D S + + + + + V + NK DL
Sbjct: 66 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN----TVIFLIGNKADLEA 121
Query: 133 ALD 135
D
Sbjct: 122 QRD 124
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166 |
| >gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6) | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.002
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 8/119 (6%)
Query: 18 ARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIG--FNVETVQYNN--IKFQVWDLGGQ 71
+++ LG + GKT+I+ R M + TIG F +T+ ++ ++ Q+WD GQ
Sbjct: 1 HKLVFLGDQSVGKTSIITRF-MYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQ 59
Query: 72 TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDL 130
R Y ++ + V D ++ + + +E + L+ NK DL
Sbjct: 60 ERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLV-GNKTDL 117
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161 |
| >gnl|CDD|206742 cd09915, Rag, Rag GTPase subfamily of Ras-related GTPases | Back alignment and domain information |
|---|
Score = 37.2 bits (86), Expect = 0.002
Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 10/103 (9%)
Query: 19 RILVLGLDNAGKTTI----LYRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGGQTS 73
++L+ G +GK++I + + + TI + + N +WD GQ
Sbjct: 1 KLLLXGRRRSGKSSIRKVVFHNYSPFDTLRLESTIDVEHSHLSFLGNXTLNLWDCPGQDV 60
Query: 74 IRPYWRCY---FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEE 113
+ F A+IYV+D D A L++
Sbjct: 61 FFEPTKDKEHIFQXVGALIYVIDVQ--DEYLKAITILAKALKQ 101
|
Rag GTPases (ras-related GTP-binding proteins) constitute a unique subgroup of the Ras superfamily, playing an essential role in regulating amino acid-induced target of rapamycin complex 1 (TORC1) kinase signaling, exocytic cargo sorting at endosomes, and epigenetic control of gene expression. This subfamily consists of RagA and RagB as well as RagC and RagD that are closely related. Saccharomyces cerevisiae encodes single orthologs of metazoan RagA/B and RagC/D, Gtr1 and Gtr2, respectively. Dimer formation is important for their cellular function; these domains form heterodimers, as RagA or RagB dimerizes with RagC or RagD, and similarly, Gtr1 dimerizes with Gtr2. In response to amino acids, the Rag GTPases guide the TORC1 complex to activate the platform containing Rheb proto-oncogene by driving the relocalization of mTORC1 from discrete locations in the cytoplasm to a late endosomal and/or lysosomal compartment that is Rheb-enriched and contains Rab-7. Length = 175 |
| >gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25 | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.002
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEV-VSTIPTIG--FNVETVQYNN--IKFQVWDLGGQ 71
+I+++G GK+ +L R E + + TIG F T+Q + IK Q+WD GQ
Sbjct: 5 KIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTAGQ 62
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165 |
| >gnl|CDD|237046 PRK12297, obgE, GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 0.002
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 15/101 (14%)
Query: 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEE-----EELKGAVALIFANKQDLPGALDD-AA 138
T +++V+D S ++ + E++ I +E L ++ ANK DLP A ++
Sbjct: 237 TRVIVHVIDMSGSEG-RDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEE 295
Query: 139 VSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
E L +F A+ G+GL E + ++ L+
Sbjct: 296 FKEKLGPK--------VFPISALTGQGLDELLYAVAELLEE 328
|
Length = 424 |
| >gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 0.003
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 29 GKTTILYRLQMGEVV-STIPTIGFNVETVQYNN----IKFQVWDLGGQ 71
GKTT + R GE + T+G V + ++ I+F VWD GQ
Sbjct: 12 GKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQ 59
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166 |
| >gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a) | Back alignment and domain information |
|---|
Score = 36.3 bits (84), Expect = 0.003
Identities = 46/179 (25%), Positives = 73/179 (40%), Gaps = 36/179 (20%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIG--FNVETVQYNN------------IKF 63
++L LG GKTT LYR + I T+G F + V YN+ +
Sbjct: 6 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVHL 65
Query: 64 QVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKE-----EFHAILEEEELKG 118
Q+WD GQ R +F + + + D + + + HA E ++
Sbjct: 66 QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPDI-- 123
Query: 119 AVALIFANKQDLPGALDDAAVSE--ALELHKIKNRQWAI--FKTCAIKGEGLFEGMDWL 173
++ NK DLP D VSE A EL ++ I F+T A G+ + + ++ L
Sbjct: 124 ---VLIGNKADLP---DQREVSERQAREL----ADKYGIPYFETSAATGQNVEKAVETL 172
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180 |
| >gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21) | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.003
Identities = 45/168 (26%), Positives = 65/168 (38%), Gaps = 28/168 (16%)
Query: 19 RILVLGLDNAGKTTILYRLQMG----EVVSTIPTIGFNVETVQY--NNIKFQVWDLGGQT 72
++++LG GKT+++ R + ST F +TV I +WD GQ
Sbjct: 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQA-SFFQKTVNIGGKRIDLAIWDTAGQE 60
Query: 73 SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVA-----LIFANK 127
Y+ + + I V D +D D Q K +ELK +I NK
Sbjct: 61 RYHALGPIYYRDADGAILVYDITDADSFQKVK------KWIKELKQMRGNNISLVIVGNK 114
Query: 128 QDLPGALDDAAVS--EALELHKIKNRQWAIFKTCAIKGEG---LFEGM 170
DL VS EA E K + F+T A G+G LF +
Sbjct: 115 IDLE---RQRVVSKSEAEEYAKSVGAK--HFETSAKTGKGIEELFLSL 157
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162 |
| >gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Score = 36.2 bits (84), Expect = 0.004
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 17 EARILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNVETVQYNN----IKFQVWDLGGQ 71
E +++++G GKTT + R GE IPT+G V +++ I F VWD GQ
Sbjct: 9 EFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQ 68
|
Length = 215 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 182 | |||
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 100.0 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 100.0 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 100.0 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 100.0 | |
| KOG0084 | 205 | consensus GTPase Rab1/YPT1, small G protein superf | 100.0 | |
| KOG0094 | 221 | consensus GTPase Rab6/YPT6/Ryh1, small G protein s | 100.0 | |
| KOG0092 | 200 | consensus GTPase Rab5/YPT51 and related small G pr | 100.0 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 100.0 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 100.0 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 100.0 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 100.0 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 100.0 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 100.0 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 100.0 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 100.0 | |
| KOG0070 | 181 | consensus GTP-binding ADP-ribosylation factor Arf1 | 100.0 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 100.0 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 100.0 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 100.0 | |
| KOG0080 | 209 | consensus GTPase Rab18, small G protein superfamil | 100.0 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 100.0 | |
| KOG0098 | 216 | consensus GTPase Rab2, small G protein superfamily | 100.0 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 100.0 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 100.0 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 100.0 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 100.0 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 100.0 | |
| KOG0078 | 207 | consensus GTP-binding protein SEC4, small G protei | 100.0 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 100.0 | |
| KOG0394 | 210 | consensus Ras-related GTPase [General function pre | 100.0 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 100.0 | |
| KOG0073 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 100.0 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 100.0 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 100.0 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 100.0 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 100.0 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 100.0 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 100.0 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 100.0 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 100.0 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 100.0 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 100.0 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 100.0 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 100.0 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 100.0 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 100.0 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 100.0 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 100.0 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 100.0 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 100.0 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 100.0 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 100.0 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 100.0 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 100.0 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 100.0 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 100.0 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 100.0 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 100.0 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 100.0 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 100.0 | |
| KOG0071 | 180 | consensus GTP-binding ADP-ribosylation factor Arf6 | 100.0 | |
| KOG0093 | 193 | consensus GTPase Rab3, small G protein superfamily | 99.98 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.98 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.98 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.98 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.98 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.98 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.98 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.98 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.98 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.98 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 99.98 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.97 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 99.97 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.97 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.97 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.97 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.97 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.97 | |
| KOG0087 | 222 | consensus GTPase Rab11/YPT3, small G protein super | 99.97 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.97 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.97 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.97 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.97 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.97 | |
| KOG0079 | 198 | consensus GTP-binding protein H-ray, small G prote | 99.97 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.97 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.97 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.97 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.97 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.97 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.97 | |
| KOG0095 | 213 | consensus GTPase Rab30, small G protein superfamil | 99.97 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.97 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.97 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.97 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.97 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.97 | |
| KOG0086 | 214 | consensus GTPase Rab4, small G protein superfamily | 99.97 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.97 | |
| KOG0075 | 186 | consensus GTP-binding ADP-ribosylation factor-like | 99.97 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.97 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.97 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.97 | |
| KOG0091 | 213 | consensus GTPase Rab39, small G protein superfamil | 99.97 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.97 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.97 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.97 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.97 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.97 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.97 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.97 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.97 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.96 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.96 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.96 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.96 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.96 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.96 | |
| KOG0088 | 218 | consensus GTPase Rab21, small G protein superfamil | 99.96 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.96 | |
| KOG0072 | 182 | consensus GTP-binding ADP-ribosylation factor-like | 99.96 | |
| KOG0076 | 197 | consensus GTP-binding ADP-ribosylation factor-like | 99.96 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.96 | |
| KOG0081 | 219 | consensus GTPase Rab27, small G protein superfamil | 99.95 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.95 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.95 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.95 | |
| KOG0395 | 196 | consensus Ras-related GTPase [General function pre | 99.95 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.95 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.95 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.95 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.94 | |
| KOG0097 | 215 | consensus GTPase Rab14, small G protein superfamil | 99.94 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.94 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.94 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.94 | |
| KOG0083 | 192 | consensus GTPase Rab26/Rab37, small G protein supe | 99.94 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.94 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.94 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.94 | |
| KOG0074 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.93 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.93 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.93 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.93 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.93 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.93 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.93 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.93 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.93 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.93 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.93 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.93 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.93 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.93 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.92 | |
| KOG4252 | 246 | consensus GTP-binding protein [Signal transduction | 99.92 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.92 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.92 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.92 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.92 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.92 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.92 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.92 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.92 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.92 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.92 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.92 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.91 | |
| KOG0393 | 198 | consensus Ras-related small GTPase, Rho type [Gene | 99.91 | |
| PTZ00099 | 176 | rab6; Provisional | 99.91 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.91 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.91 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.91 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.91 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.91 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.91 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.91 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.91 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.91 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.91 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.9 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.9 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.9 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.9 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.9 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.9 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.9 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.9 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.89 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.89 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.89 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.88 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.88 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.88 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.88 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.88 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.88 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.88 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.88 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.88 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.88 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.87 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.87 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.87 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.87 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.86 | |
| KOG1673 | 205 | consensus Ras GTPases [General function prediction | 99.86 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.86 | |
| KOG3883 | 198 | consensus Ras family small GTPase [Signal transduc | 99.86 | |
| KOG0096 | 216 | consensus GTPase Ran/TC4/GSP1 (nuclear protein tra | 99.86 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.86 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.85 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.85 | |
| KOG1423 | 379 | consensus Ras-like GTPase ERA [Cell cycle control, | 99.85 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.85 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.85 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.84 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.84 | |
| KOG0077 | 193 | consensus Vesicle coat complex COPII, GTPase subun | 99.84 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.84 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.84 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.83 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.83 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.83 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.83 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.82 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.82 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.82 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.82 | |
| KOG1489 | 366 | consensus Predicted GTP-binding protein (ODN super | 99.82 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.82 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.81 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.81 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 99.81 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.81 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.81 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.81 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.81 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.8 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.8 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.8 | |
| KOG0462 | 650 | consensus Elongation factor-type GTP-binding prote | 99.8 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.79 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.79 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.79 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.79 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.78 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.77 | |
| KOG4423 | 229 | consensus GTP-binding protein-like, RAS superfamil | 99.77 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.77 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.77 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.77 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 99.77 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.76 | |
| KOG1145 | 683 | consensus Mitochondrial translation initiation fac | 99.76 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.76 | |
| KOG1191 | 531 | consensus Mitochondrial GTPase [Translation, ribos | 99.76 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 99.76 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.75 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.75 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 99.75 | |
| KOG0090 | 238 | consensus Signal recognition particle receptor, be | 99.73 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.73 | |
| cd00066 | 317 | G-alpha G protein alpha subunit. The alpha subunit | 99.72 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 99.72 | |
| smart00275 | 342 | G_alpha G protein alpha subunit. Subunit of G prot | 99.71 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 99.71 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 99.71 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 99.7 | |
| KOG1490 | 620 | consensus GTP-binding protein CRFG/NOG1 (ODN super | 99.7 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 99.69 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 99.68 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 99.67 | |
| PRK13768 | 253 | GTPase; Provisional | 99.65 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 99.65 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.63 | |
| KOG0082 | 354 | consensus G-protein alpha subunit (small G protein | 99.62 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 99.62 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 99.6 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 99.59 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 99.59 | |
| KOG1532 | 366 | consensus GTPase XAB1, interacts with DNA repair p | 99.59 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 99.58 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 99.57 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 99.57 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 99.57 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 99.56 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 99.55 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 99.55 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 99.55 | |
| KOG0461 | 522 | consensus Selenocysteine-specific elongation facto | 99.53 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 99.53 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 99.53 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 99.53 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 99.52 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 99.51 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 99.51 | |
| KOG0458 | 603 | consensus Elongation factor 1 alpha [Translation, | 99.5 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 99.49 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 99.47 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 99.46 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 99.46 | |
| PF00503 | 389 | G-alpha: G-protein alpha subunit; InterPro: IPR001 | 99.43 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 99.43 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 99.42 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 99.42 | |
| KOG3905 | 473 | consensus Dynein light intermediate chain [Cell mo | 99.41 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 99.37 | |
| KOG0460 | 449 | consensus Mitochondrial translation elongation fac | 99.36 | |
| KOG3886 | 295 | consensus GTP-binding protein [Signal transduction | 99.35 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 99.34 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 99.34 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 99.34 | |
| smart00010 | 124 | small_GTPase Small GTPase of the Ras superfamily; | 99.33 | |
| PF05783 | 472 | DLIC: Dynein light intermediate chain (DLIC); Inte | 99.32 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 99.32 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 99.31 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 99.29 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 99.28 | |
| KOG1486 | 364 | consensus GTP-binding protein DRG2 (ODN superfamil | 99.28 | |
| KOG3887 | 347 | consensus Predicted small GTPase involved in nucle | 99.27 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 99.26 | |
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 99.25 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 99.24 | |
| KOG0410 | 410 | consensus Predicted GTP binding protein [General f | 99.22 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 99.21 | |
| KOG0085 | 359 | consensus G protein subunit Galphaq/Galphay, small | 99.21 | |
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 99.19 | |
| KOG0705 | 749 | consensus GTPase-activating protein Centaurin gamm | 99.19 | |
| KOG2486 | 320 | consensus Predicted GTPase [General function predi | 99.18 | |
| KOG0468 | 971 | consensus U5 snRNP-specific protein [Translation, | 99.16 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 99.14 | |
| KOG1954 | 532 | consensus Endocytosis/signaling protein EHD1 [Sign | 99.13 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 99.12 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 99.09 | |
| KOG2655 | 366 | consensus Septin family protein (P-loop GTPase) [C | 99.08 | |
| KOG0466 | 466 | consensus Translation initiation factor 2, gamma s | 99.08 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 99.07 | |
| KOG1487 | 358 | consensus GTP-binding protein DRG1 (ODN superfamil | 99.04 | |
| KOG0099 | 379 | consensus G protein subunit Galphas, small G prote | 99.04 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 99.02 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 99.02 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 99.0 | |
| KOG1547 | 336 | consensus Septin CDC10 and related P-loop GTPases | 98.99 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.97 | |
| KOG0448 | 749 | consensus Mitofusin 1 GTPase, involved in mitochon | 98.95 | |
| KOG0467 | 887 | consensus Translation elongation factor 2/ribosome | 98.95 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.95 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.95 | |
| KOG0463 | 641 | consensus GTP-binding protein GP-1 [General functi | 98.94 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.93 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.93 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.92 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.91 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.89 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.89 | |
| KOG1143 | 591 | consensus Predicted translation elongation factor | 98.88 | |
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 98.87 | |
| KOG0465 | 721 | consensus Mitochondrial elongation factor [Transla | 98.85 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.84 | |
| KOG0447 | 980 | consensus Dynamin-like GTP binding protein [Genera | 98.84 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.81 | |
| KOG1491 | 391 | consensus Predicted GTP-binding protein (ODN super | 98.79 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.79 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 98.77 | |
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 98.76 | |
| KOG0459 | 501 | consensus Polypeptide release factor 3 [Translatio | 98.73 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.71 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.69 | |
| cd03112 | 158 | CobW_like The function of this protein family is u | 98.64 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.62 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.62 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.6 | |
| KOG0464 | 753 | consensus Elongation factor G [Translation, riboso | 98.57 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 98.55 | |
| KOG1424 | 562 | consensus Predicted GTP-binding protein MMR1 [Gene | 98.54 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 98.53 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 98.53 | |
| KOG3859 | 406 | consensus Septins (P-loop GTPases) [Cell cycle con | 98.53 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.5 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.49 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.48 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.48 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.47 | |
| TIGR03348 | 1169 | VI_IcmF type VI secretion protein IcmF. Members of | 98.47 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 98.44 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 98.43 | |
| KOG2423 | 572 | consensus Nucleolar GTPase [General function predi | 98.41 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 98.38 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 98.37 | |
| KOG1534 | 273 | consensus Putative transcription factor FET5 [Tran | 98.32 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.32 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.31 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.31 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 98.27 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 98.25 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 98.15 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 98.15 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 98.14 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.13 | |
| PRK13695 | 174 | putative NTPase; Provisional | 98.12 | |
| PRK11537 | 318 | putative GTP-binding protein YjiA; Provisional | 98.08 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 98.08 | |
| KOG2485 | 335 | consensus Conserved ATP/GTP binding protein [Gener | 98.07 | |
| PF06858 | 58 | NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte | 98.06 | |
| PF02492 | 178 | cobW: CobW/HypB/UreG, nucleotide-binding domain; I | 98.05 | |
| PF09547 | 492 | Spore_IV_A: Stage IV sporulation protein A (spore_ | 98.04 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 98.0 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.98 | |
| COG0523 | 323 | Putative GTPases (G3E family) [General function pr | 97.97 | |
| COG3523 | 1188 | IcmF Type VI protein secretion system component Va | 97.97 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 97.97 | |
| PF03266 | 168 | NTPase_1: NTPase; InterPro: IPR004948 This entry r | 97.96 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 97.96 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.94 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 97.9 | |
| KOG0780 | 483 | consensus Signal recognition particle, subunit Srp | 97.89 | |
| COG3640 | 255 | CooC CO dehydrogenase maturation factor [Cell divi | 97.89 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.86 | |
| TIGR02475 | 341 | CobW cobalamin biosynthesis protein CobW. A broade | 97.86 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 97.85 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 97.82 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 97.82 | |
| KOG1533 | 290 | consensus Predicted GTPase [General function predi | 97.82 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 97.81 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 97.8 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 97.79 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 97.78 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.78 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.75 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 97.73 | |
| cd03111 | 106 | CpaE_like This protein family consists of proteins | 97.73 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 97.7 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 97.69 | |
| COG0563 | 178 | Adk Adenylate kinase and related kinases [Nucleoti | 97.67 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 97.67 | |
| KOG0469 | 842 | consensus Elongation factor 2 [Translation, riboso | 97.64 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 97.63 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 97.63 | |
| PRK10751 | 173 | molybdopterin-guanine dinucleotide biosynthesis pr | 97.61 | |
| PF13521 | 163 | AAA_28: AAA domain; PDB: 1LW7_A. | 97.6 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 97.57 | |
| PHA00729 | 226 | NTP-binding motif containing protein | 97.57 | |
| cd02019 | 69 | NK Nucleoside/nucleotide kinase (NK) is a protein | 97.57 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 97.56 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 97.53 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 97.53 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 97.53 | |
| cd02042 | 104 | ParA ParA and ParB of Caulobacter crescentus belon | 97.51 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 97.5 | |
| cd00071 | 137 | GMPK Guanosine monophosphate kinase (GMPK, EC 2.7. | 97.49 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 97.47 | |
| cd03116 | 159 | MobB Molybdenum is an essential trace element in t | 97.47 | |
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superf | 97.46 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 97.45 | |
| TIGR00554 | 290 | panK_bact pantothenate kinase, bacterial type. Sho | 97.45 | |
| PRK05439 | 311 | pantothenate kinase; Provisional | 97.44 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 97.44 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 97.44 | |
| PRK14738 | 206 | gmk guanylate kinase; Provisional | 97.43 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 97.43 | |
| COG0194 | 191 | Gmk Guanylate kinase [Nucleotide transport and met | 97.43 | |
| PF03215 | 519 | Rad17: Rad17 cell cycle checkpoint protein | 97.42 | |
| KOG0781 | 587 | consensus Signal recognition particle receptor, al | 97.42 | |
| PRK14737 | 186 | gmk guanylate kinase; Provisional | 97.42 | |
| PF13238 | 129 | AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB | 97.41 | |
| PF03205 | 140 | MobB: Molybdopterin guanine dinucleotide synthesis | 97.41 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 97.4 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 97.38 | |
| PRK06217 | 183 | hypothetical protein; Validated | 97.36 | |
| KOG3347 | 176 | consensus Predicted nucleotide kinase/nuclear prot | 97.36 | |
| PF04665 | 241 | Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 | 97.36 | |
| PF13191 | 185 | AAA_16: AAA ATPase domain; PDB: 2V1U_A. | 97.35 | |
| PF07728 | 139 | AAA_5: AAA domain (dynein-related subfamily); Inte | 97.35 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 97.34 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 97.34 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 97.34 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 97.34 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 97.34 | |
| PRK14530 | 215 | adenylate kinase; Provisional | 97.33 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 97.32 | |
| PRK08233 | 182 | hypothetical protein; Provisional | 97.31 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 97.31 | |
| PRK13851 | 344 | type IV secretion system protein VirB11; Provision | 97.31 | |
| COG1936 | 180 | Predicted nucleotide kinase (related to CMP and AM | 97.31 | |
| PRK03839 | 180 | putative kinase; Provisional | 97.29 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 97.29 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 97.29 | |
| cd02025 | 220 | PanK Pantothenate kinase (PanK) catalyzes the phos | 97.28 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 97.27 | |
| COG1763 | 161 | MobB Molybdopterin-guanine dinucleotide biosynthes | 97.27 | |
| PRK13949 | 169 | shikimate kinase; Provisional | 97.26 | |
| TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this famil | 97.26 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 97.25 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 97.25 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 97.25 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 97.24 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 97.24 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 97.24 |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=209.03 Aligned_cols=179 Identities=59% Similarity=1.105 Sum_probs=153.9
Q ss_pred ChhhHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhh
Q 030120 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRC 80 (182)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 80 (182)
||++++..+++.+..+.+||+++|.+|+|||||++++..+.+....||.+.+...+......+.+||+||++.+...+..
T Consensus 1 m~~~~~~~~~~~~~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~ 80 (181)
T PLN00223 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
T ss_pred CchHHHHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHH
Confidence 78888888887787888999999999999999999999887777778888888778888899999999999999999999
Q ss_pred hcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecC
Q 030120 81 YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
+++++|++|+|+|+++++++.....++..++......+.|+++++||+|+.+....+++...++........+.++++||
T Consensus 81 ~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa 160 (181)
T PLN00223 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccC
Confidence 99999999999999999999888888888776544467899999999999776666666666654433345567889999
Q ss_pred CCCCCHHHHHHHHHHHHhc
Q 030120 161 IKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 161 ~~~~~v~~l~~~i~~~~~~ 179 (182)
++|+|++++|++|.+.+..
T Consensus 161 ~~g~gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 161 TSGEGLYEGLDWLSNNIAN 179 (181)
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 9999999999999987754
|
|
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=208.18 Aligned_cols=179 Identities=58% Similarity=1.053 Sum_probs=154.1
Q ss_pred ChhhHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhh
Q 030120 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRC 80 (182)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 80 (182)
||.+++..+++.+.++.+||+++|++|+|||||++++..+.+....||.+.+...+...+..+.+|||||++.+...+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~ 80 (182)
T PTZ00133 1 MGLWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRH 80 (182)
T ss_pred CchHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 78888899998888889999999999999999999998887777778888877777788899999999999999999999
Q ss_pred hcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecC
Q 030120 81 YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
+++++|++|+|+|++++.++.....++..++......+.|+++|+||.|+.+.....++...+.........+.++++||
T Consensus 81 ~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa 160 (182)
T PTZ00133 81 YYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCA 160 (182)
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeC
Confidence 99999999999999999999988888888766544457899999999999765556666666665444455677889999
Q ss_pred CCCCCHHHHHHHHHHHHhc
Q 030120 161 IKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 161 ~~~~~v~~l~~~i~~~~~~ 179 (182)
++|.|++++|++|.+.+..
T Consensus 161 ~tg~gv~e~~~~l~~~i~~ 179 (182)
T PTZ00133 161 TTAQGLYEGLDWLSANIKK 179 (182)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999987653
|
|
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=199.98 Aligned_cols=163 Identities=56% Similarity=1.083 Sum_probs=139.6
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
++.+.++|+++|++|+|||||++++..+.+....||.+.....+.+....+.+|||||++.+...+..+++++|++++|+
T Consensus 5 ~~~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~ 84 (168)
T cd04149 5 FGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV 84 (168)
T ss_pred cCCCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence 44677999999999999999999998887777778888777777778899999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 172 (182)
|++++.++.....++.+++......+.|+++|+||+|+.+....+++....+........++++++||++|.|++++|++
T Consensus 85 D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~ 164 (168)
T cd04149 85 DSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTW 164 (168)
T ss_pred eCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHH
Confidence 99999999999888888876654467899999999999765566677666654444455678999999999999999999
Q ss_pred HHH
Q 030120 173 LSN 175 (182)
Q Consensus 173 i~~ 175 (182)
|.+
T Consensus 165 l~~ 167 (168)
T cd04149 165 LSS 167 (168)
T ss_pred Hhc
Confidence 864
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=200.08 Aligned_cols=166 Identities=63% Similarity=1.123 Sum_probs=142.1
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.+.+.+||+++|++|+|||||++++..+.+....||++.....+.+....+.+|||||++.+...+..+++++|++++|+
T Consensus 9 ~~~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~ 88 (175)
T smart00177 9 FGNKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVV 88 (175)
T ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEE
Confidence 44667999999999999999999998777766778888877777788899999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 172 (182)
|++++.++.....++..++......+.|+++|+||+|+.+.....++...+.........+.++++||++|.|++++|++
T Consensus 89 D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~ 168 (175)
T smart00177 89 DSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTW 168 (175)
T ss_pred ECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHH
Confidence 99999999999999988876544457899999999999765556666666665545556677889999999999999999
Q ss_pred HHHHHh
Q 030120 173 LSNTLK 178 (182)
Q Consensus 173 i~~~~~ 178 (182)
|.+.+.
T Consensus 169 l~~~~~ 174 (175)
T smart00177 169 LSNNLK 174 (175)
T ss_pred HHHHhc
Confidence 987653
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-37 Score=198.20 Aligned_cols=161 Identities=24% Similarity=0.363 Sum_probs=135.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
++.+||+++|+.|+|||+|+.+|....|.+ +..|++++. ..+.+ +..++++|||+||++++....+|++++|+||
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 678999999999999999999999999988 888888554 44444 5578999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceE-EEEecCCCCCCHHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWA-IFKTCAIKGEGLFE 168 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~ 168 (182)
+|||+++.+||+.+..|+.++-+... .++|.++|+||+|+.+. ..+....+...+...+.+ ++++||+++.|+++
T Consensus 87 ~vyDiT~~~SF~~v~~Wi~Ei~~~~~-~~v~~lLVGNK~Dl~~~---~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~ 162 (205)
T KOG0084|consen 87 FVYDITKQESFNNVKRWIQEIDRYAS-ENVPKLLVGNKCDLTEK---RVVSTEEAQEFADELGIPIFLETSAKDSTNVED 162 (205)
T ss_pred EEEEcccHHHhhhHHHHHHHhhhhcc-CCCCeEEEeeccccHhh---eecCHHHHHHHHHhcCCcceeecccCCccCHHH
Confidence 99999999999999999999976654 67899999999999654 233333333344455666 99999999999999
Q ss_pred HHHHHHHHHhc
Q 030120 169 GMDWLSNTLKS 179 (182)
Q Consensus 169 l~~~i~~~~~~ 179 (182)
.|..|...+..
T Consensus 163 ~F~~la~~lk~ 173 (205)
T KOG0084|consen 163 AFLTLAKELKQ 173 (205)
T ss_pred HHHHHHHHHHH
Confidence 99999887764
|
|
| >KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=194.52 Aligned_cols=165 Identities=21% Similarity=0.331 Sum_probs=145.4
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEE--CCEEEEEEECCCCCCCccchhhhcCCCC
Q 030120 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 12 ~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d 86 (182)
..+-+.+|++++|+.++||||||+++....|.. +.+|++++. ..+.+ ..+++++|||+||++++.+.+.|++++.
T Consensus 17 ~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~ 96 (221)
T KOG0094|consen 17 GAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 96 (221)
T ss_pred CccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCe
Confidence 345567999999999999999999999999887 888888654 44444 4588899999999999999999999999
Q ss_pred eEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030120 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
++|+|||+++..||+...+|+.++..+.+..++.+++|+||.||.+. .++..+++...++..+..|+++||+.|+||
T Consensus 97 vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk---rqvs~eEg~~kAkel~a~f~etsak~g~NV 173 (221)
T KOG0094|consen 97 VAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK---RQVSIEEGERKAKELNAEFIETSAKAGENV 173 (221)
T ss_pred EEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccch---hhhhHHHHHHHHHHhCcEEEEecccCCCCH
Confidence 99999999999999999999999999988777999999999999765 566666666677777888999999999999
Q ss_pred HHHHHHHHHHHhc
Q 030120 167 FEGMDWLSNTLKS 179 (182)
Q Consensus 167 ~~l~~~i~~~~~~ 179 (182)
+++|..|...++.
T Consensus 174 k~lFrrIaa~l~~ 186 (221)
T KOG0094|consen 174 KQLFRRIAAALPG 186 (221)
T ss_pred HHHHHHHHHhccC
Confidence 9999999887764
|
|
| >KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=193.48 Aligned_cols=162 Identities=25% Similarity=0.386 Sum_probs=136.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...+|++++|+.++|||||+-++..+.|.+ ..||++.. ...+...+ .++.+|||+|++++..+.+.|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 457899999999999999999999999998 68899844 44444544 78889999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
+|||+++.+||.....|+.++-.... ++.-+.+|+||+|+.+. .++........+...+..++++||++|.|++++
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~---R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~i 158 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLER---REVEFEEAQAYAESQGLLFFETSAKTGENVNEI 158 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhc---ccccHHHHHHHHHhcCCEEEEEecccccCHHHH
Confidence 99999999999999999999966654 77888889999999762 233333333344556778999999999999999
Q ss_pred HHHHHHHHhcC
Q 030120 170 MDWLSNTLKSG 180 (182)
Q Consensus 170 ~~~i~~~~~~~ 180 (182)
|..|.+.++..
T Consensus 159 f~~Ia~~lp~~ 169 (200)
T KOG0092|consen 159 FQAIAEKLPCS 169 (200)
T ss_pred HHHHHHhccCc
Confidence 99999998864
|
|
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=192.10 Aligned_cols=158 Identities=62% Similarity=1.120 Sum_probs=133.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCc
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDT 97 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (182)
+||+++|.+|+|||||++++..+.+....||.+.+...+.+....+.+|||||++.+...+..+++++|++++|+|+++.
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~ 80 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH
Confidence 48999999999999999999888777777888887777778889999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHH
Q 030120 98 DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 175 (182)
.++.....++..++......+.|+++++||+|+.+.....++.............+.++++||++|.|++++|++|.+
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 81 ERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 999999888888876544456899999999999755445555555544444455677899999999999999999864
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=193.75 Aligned_cols=172 Identities=51% Similarity=0.932 Sum_probs=145.3
Q ss_pred hHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcC
Q 030120 4 MFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFP 83 (182)
Q Consensus 4 ~~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 83 (182)
++.++++..+..+.++|+++|++|+|||||++++.++.+....||.+.+...+.+....+.+||+||++.+...+..+++
T Consensus 2 ~~~~~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~ 81 (174)
T cd04153 2 LFSSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYT 81 (174)
T ss_pred chhHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhh
Confidence 35667777766678999999999999999999999888877778888888888888999999999999999999999999
Q ss_pred CCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCC
Q 030120 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
.+|++++|+|+++++++.....++..++......+.|+++++||+|+......+++.+.+.........++++++||++|
T Consensus 82 ~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g 161 (174)
T cd04153 82 NTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTG 161 (174)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCC
Confidence 99999999999999888888888887776554467999999999999765455666666654444455678999999999
Q ss_pred CCHHHHHHHHHH
Q 030120 164 EGLFEGMDWLSN 175 (182)
Q Consensus 164 ~~v~~l~~~i~~ 175 (182)
.|++++|++|.+
T Consensus 162 ~gi~e~~~~l~~ 173 (174)
T cd04153 162 EGLPEGLDWIAS 173 (174)
T ss_pred CCHHHHHHHHhc
Confidence 999999999864
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=190.02 Aligned_cols=173 Identities=50% Similarity=0.928 Sum_probs=156.3
Q ss_pred HHHHhhhhcC-CCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcC
Q 030120 5 FSRMFSSLFG-NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFP 83 (182)
Q Consensus 5 ~~~~~~~~~~-~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 83 (182)
|++.+++... ++.++|+++|..|+||||+++++..+......||.+++...+.+.+..+.+||.+|+..++..|..++.
T Consensus 1 ~~~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~ 80 (175)
T PF00025_consen 1 FSSVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQ 80 (175)
T ss_dssp HHHHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHT
T ss_pred CHHHHHHhcccCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeecc
Confidence 3556666654 899999999999999999999999888878999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCccccc-CCceEEEEecCCC
Q 030120 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIK-NRQWAIFKTCAIK 162 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~ 162 (182)
.+|++|||+|.++.+++......+..++......+.|+++++||.|+.+.....++...+...... ...+.++.|||.+
T Consensus 81 ~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~ 160 (175)
T PF00025_consen 81 NADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKT 160 (175)
T ss_dssp TESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTT
T ss_pred ccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccC
Confidence 999999999999999999999999999887766789999999999998877888888887766554 6788999999999
Q ss_pred CCCHHHHHHHHHHHH
Q 030120 163 GEGLFEGMDWLSNTL 177 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~ 177 (182)
|+|+.+.++||.+.+
T Consensus 161 g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 161 GEGVDEGLEWLIEQI 175 (175)
T ss_dssp TBTHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHhcC
Confidence 999999999999864
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=190.88 Aligned_cols=163 Identities=52% Similarity=0.947 Sum_probs=138.1
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.....++|+++|++|+|||||++++.++.+....+|.++....+.++...+.+|||||++.+...+..+++.+|++++|+
T Consensus 10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVV 89 (173)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEE
Confidence 45677999999999999999999999887766778888777777788899999999999998888999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 172 (182)
|++++.++.....|+..++......+.|+++|+||+|+.+....+++...++........++++++||++|.|++++|++
T Consensus 90 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 169 (173)
T cd04154 90 DSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDW 169 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHH
Confidence 99999999888888888876544467999999999999765555666665554433456788999999999999999999
Q ss_pred HHH
Q 030120 173 LSN 175 (182)
Q Consensus 173 i~~ 175 (182)
+.+
T Consensus 170 l~~ 172 (173)
T cd04154 170 LVD 172 (173)
T ss_pred Hhc
Confidence 864
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=189.00 Aligned_cols=162 Identities=52% Similarity=0.935 Sum_probs=136.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcc
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (182)
||+++|.+|+|||||++++.+..+....||.+.....+.+.+..+.+|||||++.+...+..+++.+|++++|+|++++.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~ 80 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD 80 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH
Confidence 58999999999999999999987777778888777777888999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccc-cCCceEEEEecCCCCCCHHHHHHHHHHHH
Q 030120 99 RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI-KNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 177 (182)
++.....|+..+.......+.|+++|+||+|+.+....+++......... ....+.++++||++|.|++++|++|.+.+
T Consensus 81 s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~ 160 (169)
T cd04158 81 RVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred HHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence 99999999998876654456899999999999765555555555432221 12345788999999999999999999887
Q ss_pred hcC
Q 030120 178 KSG 180 (182)
Q Consensus 178 ~~~ 180 (182)
.++
T Consensus 161 ~~~ 163 (169)
T cd04158 161 VAA 163 (169)
T ss_pred hhc
Confidence 765
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=184.32 Aligned_cols=157 Identities=78% Similarity=1.289 Sum_probs=130.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcc
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (182)
||+++|++|+|||||++++..+.+....||.+.+...+.+.+..+++|||||++.+...+..+++.+|++++|+|++++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 80 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD 80 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence 68999999999999999998887777777887777777778899999999999999999999999999999999999987
Q ss_pred cHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHH
Q 030120 99 RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 175 (182)
++.....++..+++.....+.|+++|+||+|+.+.....++...+........+.+++++||++|.|++++|++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 81 RLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 77776777776655444457999999999999765445566555544333445578999999999999999999875
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=187.35 Aligned_cols=172 Identities=38% Similarity=0.621 Sum_probs=143.5
Q ss_pred HHHHhhhh-cCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcC
Q 030120 5 FSRMFSSL-FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFP 83 (182)
Q Consensus 5 ~~~~~~~~-~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 83 (182)
|.++++.. ..++.++|+++|.+|+|||||++++.++.+....||.+.....+.+.+.++.+||+||++.+...+..++.
T Consensus 4 ~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~ 83 (184)
T smart00178 4 FYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFP 83 (184)
T ss_pred HHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhC
Confidence 45566633 22788999999999999999999999987766667777777777788899999999999999889999999
Q ss_pred CCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccc-------cCCceEEE
Q 030120 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI-------KNRQWAIF 156 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 156 (182)
.+|++++|+|++++.++.....++..++......+.|+++|+||+|+......+++.+.+..... ....+.++
T Consensus 84 ~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~ 163 (184)
T smart00178 84 EVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVF 163 (184)
T ss_pred CCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEE
Confidence 99999999999999888888888888776544467899999999999766667777777754432 22567899
Q ss_pred EecCCCCCCHHHHHHHHHHH
Q 030120 157 KTCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 157 ~~Sa~~~~~v~~l~~~i~~~ 176 (182)
++||+++.|+++++++|.++
T Consensus 164 ~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 164 MCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred EeecccCCChHHHHHHHHhh
Confidence 99999999999999999865
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=191.20 Aligned_cols=158 Identities=18% Similarity=0.277 Sum_probs=124.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+.|+++|+.|+|||||++++..+.+.. +.+|.+.. ...+.+++ ..+.+|||+|++.+..++..+++++|++++||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 468999999999999999999998877 56666543 34555654 78899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCccccc-CCceEEEEecCCCCCCHHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIK-NRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~l~~ 171 (182)
|++++++++.+..|+..+.. ....+.|+++|+||+|+.+... +........+. ..++.+++|||++|.|++++|+
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~-~~~~~~piilVgNK~DL~~~~~---v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~ 156 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDK-YASEDAELLLVGNKLDCETDRE---ISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFL 156 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHH-hCCCCCcEEEEEECcccccccc---cCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHH
Confidence 99999999999988876543 3335799999999999954221 11111111111 1246799999999999999999
Q ss_pred HHHHHHhc
Q 030120 172 WLSNTLKS 179 (182)
Q Consensus 172 ~i~~~~~~ 179 (182)
++.+.+..
T Consensus 157 ~l~~~~~~ 164 (202)
T cd04120 157 KLVDDILK 164 (202)
T ss_pred HHHHHHHH
Confidence 99987654
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=180.45 Aligned_cols=180 Identities=62% Similarity=1.128 Sum_probs=170.6
Q ss_pred ChhhHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhh
Q 030120 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRC 80 (182)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 80 (182)
||..++++++..++.+..+|+++|--++||||++.++...++....||++++.+.+.+.+..+.+||..|++.++..|+.
T Consensus 1 MG~~~s~~~~~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~ 80 (181)
T KOG0070|consen 1 MGLIFSKLFSGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKH 80 (181)
T ss_pred CcchhhhhhhhccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhh
Confidence 88999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred hcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecC
Q 030120 81 YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
|+++.+++|||+|.++.+++......+..++......+.|+++..||-|+...-...++.+.+.........+.+..|+|
T Consensus 81 Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a 160 (181)
T KOG0070|consen 81 YFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCA 160 (181)
T ss_pred hccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccc
Confidence 99999999999999999999999999999988877678999999999999988888999999998888889999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcC
Q 030120 161 IKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 161 ~~~~~v~~l~~~i~~~~~~~ 180 (182)
.+|+|+.+.++++.+.+...
T Consensus 161 ~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 161 ISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred cccccHHHHHHHHHHHHhcc
Confidence 99999999999999987653
|
|
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=189.79 Aligned_cols=158 Identities=20% Similarity=0.280 Sum_probs=127.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
+..+||+++|..|+|||||+.++..+.+.. ..++.+... ..+.+++ ..+.+|||+|++.+..++..+++.+|+++
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 456899999999999999999999887765 445555433 3444444 77889999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|||++++.++..+..|+..+.... ++.|+++|+||+|+.+.. ..++.. ..++..+++++++||++|.||+
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~-----~~a~~~~~~~~e~SAk~g~~V~ 156 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQ-----AYAERNGMTFFEVSPLCNFNIT 156 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHH-----HHHHHcCCEEEEecCCCCCCHH
Confidence 9999999999999999988885542 579999999999996421 222222 2223345789999999999999
Q ss_pred HHHHHHHHHHhc
Q 030120 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~i~~~~~~ 179 (182)
++|+++.+.+..
T Consensus 157 ~~F~~l~~~i~~ 168 (189)
T cd04121 157 ESFTELARIVLM 168 (189)
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=186.92 Aligned_cols=160 Identities=19% Similarity=0.214 Sum_probs=126.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee-EEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.+||+++|.+|+|||||++++.++.+.. ..||.+.... .+...+ ..+.+|||||++.+..++..+++.+|++++||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 4799999999999999999999998876 6667664332 344444 67889999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 172 (182)
|++++.++.....|+..+.......+.|+++|+||+|+.+... +........++..++++++|||++|.||+++|++
T Consensus 82 d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~---v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~ 158 (172)
T cd04141 82 SVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQ---VTTEEGRNLAREFNCPFFETSAALRHYIDDAFHG 158 (172)
T ss_pred ECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCc---cCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHH
Confidence 9999999999988776665443335799999999999854321 1111111222344678999999999999999999
Q ss_pred HHHHHhc
Q 030120 173 LSNTLKS 179 (182)
Q Consensus 173 i~~~~~~ 179 (182)
+.+.+.+
T Consensus 159 l~~~~~~ 165 (172)
T cd04141 159 LVREIRR 165 (172)
T ss_pred HHHHHHH
Confidence 9987664
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=191.64 Aligned_cols=160 Identities=22% Similarity=0.289 Sum_probs=126.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCc
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDT 97 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (182)
+||+++|.+|+|||||++++.++.+....+|++.......+....+.+|||||++.+...+..+++.+|++|+|||++++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~ 80 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNV 80 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999999987777787766655556678899999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC----------------HHHHHHHhCccccc------------
Q 030120 98 DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD----------------DAAVSEALELHKIK------------ 149 (182)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------------~~~~~~~~~~~~~~------------ 149 (182)
+++..+..|+..+... ...+.|+++|+||+|+.+... ...+........++
T Consensus 81 ~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~ 159 (220)
T cd04126 81 QSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDL 159 (220)
T ss_pred HHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccc
Confidence 9999999998887654 235689999999999964100 01111111111111
Q ss_pred --CCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 030120 150 --NRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 150 --~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
...+++++|||++|.||+++|..+.+.+.
T Consensus 160 ~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 160 SPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred cccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 12367999999999999999999997654
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=177.83 Aligned_cols=164 Identities=20% Similarity=0.324 Sum_probs=142.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccccc-cc--ceeeEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPT-IG--FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t-~~--~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...+||+++|.+|+|||||+.+|....|.+..|+ ++ +....+.+ ...++.+|||+|+++++.+.+.|++.+.++|
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI 88 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII 88 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence 4569999999999999999999999999885554 55 44555555 5678899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
+|+|++..++|..+..|+.++-....+++...++|+||+|... ...+...+....++..++-++++||++.+|++..
T Consensus 89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes---~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 89 LVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES---ERVVDREEGLKFARKHRCLFIECSAKTRENVQCC 165 (209)
T ss_pred EEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh---cccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence 9999999999999999999998887778888899999999643 3566667777777888889999999999999999
Q ss_pred HHHHHHHHhcCC
Q 030120 170 MDWLSNTLKSGG 181 (182)
Q Consensus 170 ~~~i~~~~~~~~ 181 (182)
|+.+.+++.+.+
T Consensus 166 FeelveKIi~tp 177 (209)
T KOG0080|consen 166 FEELVEKIIETP 177 (209)
T ss_pred HHHHHHHHhcCc
Confidence 999999987654
|
|
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=180.29 Aligned_cols=157 Identities=63% Similarity=1.077 Sum_probs=137.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcc
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (182)
||+++|.+|+|||||++++.+..+....+|.+.....+.+....+.+||+||++.+...+..+++.+|++++|+|+++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~ 80 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE 80 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence 68999999999999999999998766888888888888888999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHH
Q 030120 99 RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 175 (182)
++.....++..+.......+.|+++|+||+|+......+++.+.+.........++++++||++|.|++++|++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 81 RIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 99999888888877655568999999999999876666677666655434456789999999999999999999875
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=181.52 Aligned_cols=160 Identities=21% Similarity=0.292 Sum_probs=139.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...+|+.++|+.|+|||+|+.++..+.|.+ ...|+++.. ..+.+ ...++++|||+|++.+.....+|++.+-++|
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 567899999999999999999999999988 666777543 33444 5688899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
+|||+++.++|..+..|+.++.+.. .++..+++++||+|+... +++..++.+.+++..+..++++||++++|+++.
T Consensus 84 LVydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~r---R~Vs~EEGeaFA~ehgLifmETSakt~~~VEEa 159 (216)
T KOG0098|consen 84 LVYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEAR---REVSKEEGEAFAREHGLIFMETSAKTAENVEEA 159 (216)
T ss_pred EEEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhcc---ccccHHHHHHHHHHcCceeehhhhhhhhhHHHH
Confidence 9999999999999999999996653 478999999999999654 467777777777888889999999999999999
Q ss_pred HHHHHHHHh
Q 030120 170 MDWLSNTLK 178 (182)
Q Consensus 170 ~~~i~~~~~ 178 (182)
|......+.
T Consensus 160 F~nta~~Iy 168 (216)
T KOG0098|consen 160 FINTAKEIY 168 (216)
T ss_pred HHHHHHHHH
Confidence 988776654
|
|
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=184.93 Aligned_cols=161 Identities=14% Similarity=0.158 Sum_probs=125.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee-EEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEe
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
+|++++|++|+|||||+.++..+.+.. +.||.+.... .+.. ...++.+|||+|++.+..++..+++++|++++|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 589999999999999999999999876 7777764332 3333 34788999999999999999999999999999999
Q ss_pred CCCcccHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH-------HHHHHHhCcccccCCce-EEEEecCCCCC
Q 030120 94 SSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLPGALDD-------AAVSEALELHKIKNRQW-AIFKTCAIKGE 164 (182)
Q Consensus 94 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 164 (182)
++++.||..+ ..|+..+.... .+.|+++|+||+|+.+.... ..+........+...+. ++++|||++|.
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 9999999998 57887775432 47999999999999643110 01111122222233344 69999999999
Q ss_pred CHHHHHHHHHHHHhcC
Q 030120 165 GLFEGMDWLSNTLKSG 180 (182)
Q Consensus 165 ~v~~l~~~i~~~~~~~ 180 (182)
||+++|+.+.+.+.+.
T Consensus 160 nV~~~F~~~~~~~~~~ 175 (176)
T cd04133 160 NVKAVFDAAIKVVLQP 175 (176)
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999999977554
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=181.11 Aligned_cols=157 Identities=18% Similarity=0.315 Sum_probs=126.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEE----CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|+|||||++++..+.+.. ..+|.+.......+ ....+.+|||||++.+...+..++..+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 589999999999999999999887765 66777655544433 3478899999999998888889999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 172 (182)
|++++.++.....|+..+..... +.|+++|+||+|+.+.....+..+ ......++++++||++|.|++++|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~--~~piiiv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~e~Sa~~~~~v~~~f~~ 153 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG--NIPIVLCGNKVDIKDRKVKAKQIT-----FHRKKNLQYYEISAKSNYNFEKPFLW 153 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC--CCcEEEEEEchhcccccCCHHHHH-----HHHHcCCEEEEEeCCCCCChHHHHHH
Confidence 99999999999888888866542 799999999999964332222211 11235677999999999999999999
Q ss_pred HHHHHhcCC
Q 030120 173 LSNTLKSGG 181 (182)
Q Consensus 173 i~~~~~~~~ 181 (182)
|.+.+.+.+
T Consensus 154 l~~~~~~~~ 162 (166)
T cd00877 154 LARKLLGNP 162 (166)
T ss_pred HHHHHHhcc
Confidence 999887654
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=180.79 Aligned_cols=157 Identities=41% Similarity=0.771 Sum_probs=127.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc-cc-ccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEV-VS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSD 96 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~-~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~ 96 (182)
+|+++|++|+|||||++++.+..+ .. ..||.+.....+...+..+.+|||||++.+...+..+++.+|++++|+|+++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 80 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD 80 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence 589999999999999999998753 33 6778887766677788999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHhccc--cCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHH
Q 030120 97 TDRIQTAKEEFHAILEEEE--LKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 97 ~~s~~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 174 (182)
+.++.....|+..+..... ..+.|+++|+||+|+.+.....++...+.........++++++||++|.|++++|++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 81 RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence 9888888778777765422 24799999999999976544555555554333233456799999999999999999986
Q ss_pred H
Q 030120 175 N 175 (182)
Q Consensus 175 ~ 175 (182)
+
T Consensus 161 ~ 161 (162)
T cd04157 161 A 161 (162)
T ss_pred c
Confidence 4
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-32 Score=183.64 Aligned_cols=164 Identities=41% Similarity=0.697 Sum_probs=138.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEe
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
..+..+|+++|++|+|||||++++.+..+..+.||.+.....+.+.+.++.+||+||++.+...+..+++.+|++++|+|
T Consensus 16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D 95 (190)
T cd00879 16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVD 95 (190)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEE
Confidence 46789999999999999999999999887777788888888888888999999999999888888999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccc-----------cCCceEEEEecCCC
Q 030120 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI-----------KNRQWAIFKTCAIK 162 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~Sa~~ 162 (182)
+++..++.....++..+.......+.|+++++||+|+.......++...+..... ....+.+++|||++
T Consensus 96 ~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 175 (190)
T cd00879 96 AADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVK 175 (190)
T ss_pred CCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecC
Confidence 9999888888888888876555567999999999999766666677666653221 12446799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 030120 163 GEGLFEGMDWLSNTL 177 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~ 177 (182)
|+|++++|++|.+.+
T Consensus 176 ~~gv~e~~~~l~~~~ 190 (190)
T cd00879 176 RQGYGEAFRWLSQYL 190 (190)
T ss_pred CCChHHHHHHHHhhC
Confidence 999999999998753
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-32 Score=182.72 Aligned_cols=164 Identities=45% Similarity=0.816 Sum_probs=130.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEE-----CCEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY-----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
..++|+++|++|+|||||++++....+....||.+........ ....+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 3579999999999999999999988887766777655544433 45789999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccc-cCCceEEEEecCCCCCCHHHH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI-KNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~l 169 (182)
|+|++++.++.....|+..+.......+.|+++|+||+|+.+.....++......... ....++++++||++|.|++++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 161 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEG 161 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHH
Confidence 9999999888888888777766544457999999999998654444454444432221 223467999999999999999
Q ss_pred HHHHHHHHhc
Q 030120 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~i~~~~~~ 179 (182)
+++|.+.+.+
T Consensus 162 ~~~l~~~l~~ 171 (183)
T cd04152 162 LEKLYEMILK 171 (183)
T ss_pred HHHHHHHHHH
Confidence 9999987753
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=183.51 Aligned_cols=163 Identities=23% Similarity=0.328 Sum_probs=137.0
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCe
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
+.+..+|++++|++|+|||+++.+|..+.+.. ..+|+++.. ..+.. ....+++|||+||++++.....|++++++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 45788999999999999999999999999887 666777554 44555 45788999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030120 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+++|||+++..||+....|+..+- .....++|.++|+||+|+.+. ..+...-.+..+...++.++++||++|.||+
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~-e~a~~~v~~~LvGNK~D~~~~---R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~ 163 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNID-EHASDDVVKILVGNKCDLEEK---RQVSKERGEALAREYGIKFFETSAKTNFNIE 163 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHH-hhCCCCCcEEEeecccccccc---ccccHHHHHHHHHHhCCeEEEccccCCCCHH
Confidence 999999999999999999777764 444468999999999999753 3444444445556678899999999999999
Q ss_pred HHHHHHHHHHhc
Q 030120 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~i~~~~~~ 179 (182)
+.|-.+.+.+.+
T Consensus 164 eaF~~La~~i~~ 175 (207)
T KOG0078|consen 164 EAFLSLARDILQ 175 (207)
T ss_pred HHHHHHHHHHHh
Confidence 999999987763
|
|
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-33 Score=183.26 Aligned_cols=157 Identities=18% Similarity=0.279 Sum_probs=124.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
.+||+++|++|+|||||++++.++.+.. ..+|.+... ..+... ..++.+|||||++.+...+..+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 4799999999999999999999998877 455655443 234443 45789999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
+|++++.+++....|+..+... ..++.|+++|+||+|+.+.. ..++.... +...+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~~i~e~ 155 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEAKQF-----ADENGLLFLECSAKTGENVEDA 155 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHHHHH-----HHHcCCEEEEEECCCCCCHHHH
Confidence 9999999999999998877543 23578999999999996542 22222222 1234568999999999999999
Q ss_pred HHHHHHHHhc
Q 030120 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~i~~~~~~ 179 (182)
|..+.+.+.+
T Consensus 156 f~~l~~~~~~ 165 (166)
T cd04122 156 FLETAKKIYQ 165 (166)
T ss_pred HHHHHHHHhh
Confidence 9999987654
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >KOG0394 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=179.48 Aligned_cols=165 Identities=18% Similarity=0.283 Sum_probs=132.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeE
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
...-+||.++|++|+|||||+|++.+++|.. +..|++.. ...+.+ .-+.+++|||+|+++++.+...+++.+|++
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 3556899999999999999999999999988 88888844 344444 447789999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhcccc---CCCeEEEEEeCCCCCCCCCHHHHHHHhCc-ccccCCceEEEEecCCCCC
Q 030120 89 IYVVDSSDTDRIQTAKEEFHAILEEEEL---KGAVALIFANKQDLPGALDDAAVSEALEL-HKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~iivv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Sa~~~~ 164 (182)
++++|++++.+|+.+..|-.+++....- ..-|.|+++||+|+...... .+....+. ......++|||++|||...
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r-~VS~~~Aq~WC~s~gnipyfEtSAK~~~ 164 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSR-QVSEKKAQTWCKSKGNIPYFETSAKEAT 164 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccc-eeeHHHHHHHHHhcCCceeEEecccccc
Confidence 9999999999999999999999887542 23599999999999653211 12222211 1123467899999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 030120 165 GLFEGMDWLSNTLKS 179 (182)
Q Consensus 165 ~v~~l~~~i~~~~~~ 179 (182)
||.+.|..+.....+
T Consensus 165 NV~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 165 NVDEAFEEIARRALA 179 (210)
T ss_pred cHHHHHHHHHHHHHh
Confidence 999999999886554
|
|
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=179.25 Aligned_cols=157 Identities=45% Similarity=0.872 Sum_probs=129.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEE-CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCc
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDT 97 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (182)
+|+++|++|+|||||++++.++.+....||.+.....+.. ....+.+|||||++.+...+..++..+|++++|+|+.++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~ 80 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE 80 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH
Confidence 5899999999999999999999887777887776666655 457899999999999988899999999999999999999
Q ss_pred ccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcc-cccCCceEEEEecCCCCCCHHHHHHHHHH
Q 030120 98 DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELH-KIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 175 (182)
.++.....++..+++.....+.|+++|+||+|+.......++...+... .....+++++++||++|+|++++|++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 81 ARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 8888888888888765444679999999999997554556665554322 22235678999999999999999999864
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-32 Score=169.26 Aligned_cols=168 Identities=46% Similarity=0.866 Sum_probs=153.4
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 12 ~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
...+++++|+++|..|+||||++++|.+.......||.+++..+..+++..+.+||.+|+..++..|+.|+..+|++|+|
T Consensus 11 k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwv 90 (185)
T KOG0073|consen 11 KLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWV 90 (185)
T ss_pred HhhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEE
Confidence 34677999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccc-cCCceEEEEecCCCCCCHHHHH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI-KNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
+|.+++.+++.....+...+......+.|++++.||.|+......+++......... +...++++.||+.+|+++.+-+
T Consensus 91 vDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gi 170 (185)
T KOG0073|consen 91 VDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGI 170 (185)
T ss_pred EECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHH
Confidence 999999999999999888888766678999999999999877777788777765544 7788999999999999999999
Q ss_pred HHHHHHHhc
Q 030120 171 DWLSNTLKS 179 (182)
Q Consensus 171 ~~i~~~~~~ 179 (182)
+|+.+.+.+
T Consensus 171 dWL~~~l~~ 179 (185)
T KOG0073|consen 171 DWLCDDLMS 179 (185)
T ss_pred HHHHHHHHH
Confidence 999988765
|
|
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=185.24 Aligned_cols=160 Identities=20% Similarity=0.356 Sum_probs=127.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee--EEEEC------------CEEEEEEECCCCCCCccchh
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQYN------------NIKFQVWDLGGQTSIRPYWR 79 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~~------------~~~~~~~D~~g~~~~~~~~~ 79 (182)
++.+||+++|++|+|||||++++.++.+.. ..+|.+.... .+.+. ...+.+|||||++.+...+.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 356899999999999999999999988877 5666654332 23332 36789999999999999999
Q ss_pred hhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEE
Q 030120 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFK 157 (182)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
.+++++|++++|||+++++++.....|+..+.......+.|+++|+||+|+.+.. ..++..... ...++++++
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e 156 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALA-----DKYGIPYFE 156 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHH-----HHcCCeEEE
Confidence 9999999999999999999999999998887655444578999999999996432 222222221 223467999
Q ss_pred ecCCCCCCHHHHHHHHHHHHhc
Q 030120 158 TCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 158 ~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
+||++|.|++++|+.|.+.+.+
T Consensus 157 ~Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 157 TSAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred EeCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999987653
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=181.26 Aligned_cols=156 Identities=18% Similarity=0.242 Sum_probs=122.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccc-ceeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG-FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.+||+++|++|+|||||++++..+.+.. ..+|.+ .....+..++ ..+.+|||||++.+...+..+++.+|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 3699999999999999999999888766 555554 2233444444 56788999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--HHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
|++++.++.....|+..+.......+.|+++|+||+|+.+... ..+.. .+. ...+.+++++||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-~~~----~~~~~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQ-ALA----RQWGCPFYETSAKSKINVDEVF 155 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHH-HHH----HHcCCeEEEecCCCCCCHHHHH
Confidence 9999999999998888887655446799999999999864321 11111 111 1223689999999999999999
Q ss_pred HHHHHHH
Q 030120 171 DWLSNTL 177 (182)
Q Consensus 171 ~~i~~~~ 177 (182)
+++.+.+
T Consensus 156 ~~l~~~~ 162 (163)
T cd04136 156 ADLVRQI 162 (163)
T ss_pred HHHHHhc
Confidence 9998764
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=184.62 Aligned_cols=161 Identities=20% Similarity=0.254 Sum_probs=125.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
...+||+++|++|+|||||++++..+.+.. +.||.+... ..+.. ....+.+|||+|++.+..++..+++++|++++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 567899999999999999999999998876 667776433 23333 34678999999999999999999999999999
Q ss_pred EEeCCCcccHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCCCCCC---------HHHHHHHhCcccccCCc-eEEEEec
Q 030120 91 VVDSSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLPGALD---------DAAVSEALELHKIKNRQ-WAIFKTC 159 (182)
Q Consensus 91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~S 159 (182)
|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+... ...+........++..+ +++++||
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S 160 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 160 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 9999999999997 67777765432 5789999999999854210 00122222223334455 4899999
Q ss_pred CCCCCC-HHHHHHHHHHHH
Q 030120 160 AIKGEG-LFEGMDWLSNTL 177 (182)
Q Consensus 160 a~~~~~-v~~l~~~i~~~~ 177 (182)
|++|.| |+++|+.+++..
T Consensus 161 Ak~~~n~v~~~F~~~~~~~ 179 (182)
T cd04172 161 ALQSENSVRDIFHVATLAC 179 (182)
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 999998 999999998854
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-32 Score=178.55 Aligned_cols=157 Identities=37% Similarity=0.608 Sum_probs=132.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcc
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (182)
+|+++|++|+|||||++++.++......||.+.....+......+.+||+||++.+...+..+++++|++++|+|+++..
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~ 80 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD 80 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh
Confidence 47999999999999999999874444788888887788888999999999999999999999999999999999999998
Q ss_pred cHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccc---cCCceEEEEecCCCC------CCHHHH
Q 030120 99 RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI---KNRQWAIFKTCAIKG------EGLFEG 169 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~------~~v~~l 169 (182)
++.....|+..+.......+.|+++|+||+|+.+.....++...+..... ....++++++||++| .|+++.
T Consensus 81 s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~ 160 (167)
T cd04161 81 RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEG 160 (167)
T ss_pred HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHH
Confidence 99999989888876544467899999999999876666666666543332 234578999999998 899999
Q ss_pred HHHHHH
Q 030120 170 MDWLSN 175 (182)
Q Consensus 170 ~~~i~~ 175 (182)
|+||.+
T Consensus 161 ~~wl~~ 166 (167)
T cd04161 161 LRWLLA 166 (167)
T ss_pred HHHHhc
Confidence 999964
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-33 Score=186.85 Aligned_cols=161 Identities=17% Similarity=0.226 Sum_probs=123.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee-EEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.+||+++|+.|+|||||+.++..+.+.. +.||.+..+. .+.. ....+.+|||+|++.+..++..+++++|++++||
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvy 82 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICF 82 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEE
Confidence 5799999999999999999999998865 6777764433 2333 3467899999999999999999999999999999
Q ss_pred eCCCcccHHHHHH-HHHHHHhccccCCCeEEEEEeCCCCCCCCCH-HHHHH--------HhCcccccCCc-eEEEEecCC
Q 030120 93 DSSDTDRIQTAKE-EFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSE--------ALELHKIKNRQ-WAIFKTCAI 161 (182)
Q Consensus 93 d~~~~~s~~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~--------~~~~~~~~~~~-~~~~~~Sa~ 161 (182)
|++++.|++.+.. |...+... .++.|+++|+||.|+.+.... ..+.. ......+...+ ++++++||+
T Consensus 83 dit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 83 SIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 9999999999974 65555432 257999999999999643211 11111 11111122233 589999999
Q ss_pred CCCCHHHHHHHHHHHHhc
Q 030120 162 KGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 162 ~~~~v~~l~~~i~~~~~~ 179 (182)
+|.|++++|+.+.+.+..
T Consensus 161 ~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 161 NQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999987654
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=182.84 Aligned_cols=159 Identities=24% Similarity=0.356 Sum_probs=125.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEEC---CEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN---NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+||+++|++|+|||||++++.++.+.. +.+|.+.+. ..+.+. ...+.+|||||++.+...+..+++++|++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999988766 667776443 334443 46789999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhcc---ccCCCeEEEEEeCCCCCC--CCCHHHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEE---ELKGAVALIFANKQDLPG--ALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~iivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
||++++.++..+..|+..+.... ...+.|+++|+||+|+.+ .....+..+.... ....+++++||++|.|+
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~e~Sak~~~~v 156 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKE----NGFIGWFETSAKEGINI 156 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHH----cCCceEEEEeCCCCCCH
Confidence 99999999999988887765422 235689999999999963 2333343333321 11257999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 030120 167 FEGMDWLSNTLKSG 180 (182)
Q Consensus 167 ~~l~~~i~~~~~~~ 180 (182)
+++|++|.+.+.+.
T Consensus 157 ~e~f~~l~~~l~~~ 170 (201)
T cd04107 157 EEAMRFLVKNILAN 170 (201)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887653
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=185.09 Aligned_cols=160 Identities=16% Similarity=0.192 Sum_probs=126.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee-EEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
...+||+++|++|+|||||++++.++.+.. ..||.+.... .+.++ ...+.+|||||++.+..++..+++.+|++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 346899999999999999999999988765 5666654432 33333 4567899999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
|+|+++++++.....|+..+.......+.|+++|+||+|+.+.. ...+.... ....+++++++||++|.|+++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~-----~~~~~~~~~e~Sak~~~gi~~ 157 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQEL-----AKSFGIPFLETSAKQRVNVDE 157 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHH-----HHHhCCEEEEeeCCCCCCHHH
Confidence 99999999999999988888765444578999999999985432 22121111 122346799999999999999
Q ss_pred HHHHHHHHHhc
Q 030120 169 GMDWLSNTLKS 179 (182)
Q Consensus 169 l~~~i~~~~~~ 179 (182)
+|++|.+.+.+
T Consensus 158 ~~~~l~~~l~~ 168 (189)
T PTZ00369 158 AFYELVREIRK 168 (189)
T ss_pred HHHHHHHHHHH
Confidence 99999987654
|
|
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-32 Score=177.84 Aligned_cols=154 Identities=34% Similarity=0.613 Sum_probs=128.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcc
Q 030120 20 ILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (182)
|+++|++|+|||||++++.++.+.. +.||.+.....+...+..+.+||+||++.+...+..+++++|++++|+|.+++.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~ 81 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSE 81 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHH
Confidence 7899999999999999999887665 778888777677778899999999999999999999999999999999999998
Q ss_pred cHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCc-ccccCCceEEEEecCCC------CCCHHHHHH
Q 030120 99 RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALEL-HKIKNRQWAIFKTCAIK------GEGLFEGMD 171 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Sa~~------~~~v~~l~~ 171 (182)
++.....|+..+.... ++.|+++|+||+|+.......++...... ......+++++++||++ ++||+++|+
T Consensus 82 s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~ 159 (164)
T cd04162 82 RLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLS 159 (164)
T ss_pred HHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHH
Confidence 8888888888876443 57999999999999765555554444432 22345678899999988 999999999
Q ss_pred HHHH
Q 030120 172 WLSN 175 (182)
Q Consensus 172 ~i~~ 175 (182)
.++.
T Consensus 160 ~~~~ 163 (164)
T cd04162 160 QLIN 163 (164)
T ss_pred HHhc
Confidence 8764
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=182.34 Aligned_cols=157 Identities=17% Similarity=0.192 Sum_probs=120.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee-EEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEEEe
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
+|++++|++|+|||||++++..+.+.. +.||.+.... .+...+ ..+.+|||+|++.+...+..+++++|++++|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 689999999999999999999998865 7777765443 444544 678899999999999999999999999999999
Q ss_pred CCCcccHHHHHH-HHHHHHhccccCCCeEEEEEeCCCCCCCCCHH-HH--------HHHhCcccccCC-ceEEEEecCCC
Q 030120 94 SSDTDRIQTAKE-EFHAILEEEELKGAVALIFANKQDLPGALDDA-AV--------SEALELHKIKNR-QWAIFKTCAIK 162 (182)
Q Consensus 94 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~-~~--------~~~~~~~~~~~~-~~~~~~~Sa~~ 162 (182)
+++++++..... |...+... .++.|+++|+||+|+.+..... .+ .........+.. .+.++++||++
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t 159 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence 999999999875 65555432 2578999999999985431110 00 001111111222 36899999999
Q ss_pred CCCHHHHHHHHHHH
Q 030120 163 GEGLFEGMDWLSNT 176 (182)
Q Consensus 163 ~~~v~~l~~~i~~~ 176 (182)
|.|++++|+.++.+
T Consensus 160 g~~v~~~f~~~~~~ 173 (175)
T cd01874 160 QKGLKNVFDEAILA 173 (175)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999999874
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=180.99 Aligned_cols=157 Identities=18% Similarity=0.236 Sum_probs=124.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
++||+++|.+|+|||||++++..+.+.. ..+|++... ..+... ...+.+|||||++.+...+..+++.+|++++|+
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 4789999999999999999999887766 556665332 334444 456779999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--HHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
|+++..++.....|+..+.......+.|+++|+||+|+.+... ..+. ..+ ....+++++++||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~----~~~~~~~~~~~Sa~~~~~v~~~~ 155 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQG-QNL----ARQWGCAFLETSAKAKINVNEIF 155 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHH-HHH----HHHhCCEEEEeeCCCCCCHHHHH
Confidence 9999999999999988887655556799999999999964321 1221 111 12234689999999999999999
Q ss_pred HHHHHHHh
Q 030120 171 DWLSNTLK 178 (182)
Q Consensus 171 ~~i~~~~~ 178 (182)
.++.+.+.
T Consensus 156 ~~l~~~l~ 163 (164)
T cd04175 156 YDLVRQIN 163 (164)
T ss_pred HHHHHHhh
Confidence 99988653
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=181.08 Aligned_cols=156 Identities=23% Similarity=0.380 Sum_probs=124.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee--EEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|+|||||++++.++.+.. +.+|.+.... .+.. ....+.+|||||++.+...+..+++.+|++|+|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999998776 6667665433 3443 3478889999999998888999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhcccc----CCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEEL----KGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~----~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
|++++.++.....|+..+...... .+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi 155 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWA-----ESKGFKYFETSACTGEGV 155 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHH-----HHcCCeEEEEECCCCCCH
Confidence 999999999999888888665432 468999999999996321 222222211 223367999999999999
Q ss_pred HHHHHHHHHHHh
Q 030120 167 FEGMDWLSNTLK 178 (182)
Q Consensus 167 ~~l~~~i~~~~~ 178 (182)
+++|++|.+.+.
T Consensus 156 ~~l~~~l~~~l~ 167 (168)
T cd04119 156 NEMFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-32 Score=180.74 Aligned_cols=159 Identities=19% Similarity=0.280 Sum_probs=124.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+|++++|+.|+|||||++++.++.+.. +.||.+.+. ..+..++ ..+.+|||+|++.+...+..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 589999999999999999999998877 778887554 3455544 67899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC---HHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD---DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
|++++.++..+..|+..+..... ...| ++|+||+|+..... ...+. ......+...+++++++||++|.|++++
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~-~~~p-ilVgnK~Dl~~~~~~~~~~~~~-~~~~~~a~~~~~~~~e~SAk~g~~v~~l 157 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNK-TAIP-ILVGTKYDLFADLPPEEQEEIT-KQARKYAKAMKAPLIFCSTSHSINVQKI 157 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCE-EEEEEchhccccccchhhhhhH-HHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999888765422 3466 67899999953211 11111 1111222334578999999999999999
Q ss_pred HHHHHHHHhc
Q 030120 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~i~~~~~~ 179 (182)
|+++.+.+.+
T Consensus 158 f~~l~~~l~~ 167 (182)
T cd04128 158 FKIVLAKAFD 167 (182)
T ss_pred HHHHHHHHHh
Confidence 9999987765
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-31 Score=177.03 Aligned_cols=163 Identities=51% Similarity=0.895 Sum_probs=137.0
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+..+.++++++|++|+|||||++++.+..+....+|.+.+...+...+..+.+||+||+..+...+..+++.+|++++|+
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 89 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVI 89 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEE
Confidence 44568999999999999999999999987766777888887788888899999999999888888888999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 172 (182)
|+.+..++.....++..+.......+.|+++++||+|+.+....+++...++........++++++||++|+|++++|++
T Consensus 90 D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 169 (173)
T cd04155 90 DSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNW 169 (173)
T ss_pred eCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHH
Confidence 99998888888878777766544457999999999999766556666666654444445567899999999999999999
Q ss_pred HHH
Q 030120 173 LSN 175 (182)
Q Consensus 173 i~~ 175 (182)
|.+
T Consensus 170 l~~ 172 (173)
T cd04155 170 VCK 172 (173)
T ss_pred Hhc
Confidence 875
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=180.41 Aligned_cols=158 Identities=22% Similarity=0.337 Sum_probs=126.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
..+||+++|++|+|||||++++.+..+.. ..+|.+... ..+.+.+ ..+.+|||||++.+...+..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 46899999999999999999999998877 667766543 3444443 578999999999998889999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
|+|+++++++..+..|+..+... ...+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 155 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALA-----DEYGIKFLETSAKANINVEE 155 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999888877653 23578999999999996432 222222221 22346799999999999999
Q ss_pred HHHHHHHHHhc
Q 030120 169 GMDWLSNTLKS 179 (182)
Q Consensus 169 l~~~i~~~~~~ 179 (182)
+|+++.+.+..
T Consensus 156 ~~~~i~~~~~~ 166 (167)
T cd01867 156 AFFTLAKDIKK 166 (167)
T ss_pred HHHHHHHHHHh
Confidence 99999988753
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=177.00 Aligned_cols=156 Identities=18% Similarity=0.211 Sum_probs=123.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce-eeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN-VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.+||+++|++|+|||||++++.++.+.. ..+|.+.. ...+...+ ..+.+|||||++.+..++..+++.++++++|+
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 3689999999999999999999988766 55655533 23334443 55788999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC-HHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 171 (182)
|+++..++.....|+..+.......+.|+++|+||+|+.+... ..+..... ...+++++++||++|.|++++|+
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~ 155 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLA-----KSYGIPYIETSAKTRQGVEEAFY 155 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHH-----HHhCCeEEEecCCCCCCHHHHHH
Confidence 9999999998888888887655446789999999999965322 22222221 22345799999999999999999
Q ss_pred HHHHHH
Q 030120 172 WLSNTL 177 (182)
Q Consensus 172 ~i~~~~ 177 (182)
++.+.+
T Consensus 156 ~l~~~~ 161 (162)
T cd04138 156 TLVREI 161 (162)
T ss_pred HHHHHh
Confidence 998754
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=184.83 Aligned_cols=158 Identities=18% Similarity=0.292 Sum_probs=129.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEE----CCEEEEEEECCCCCCCccchhhhcCCCCeE
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
....+||+++|++|+|||||++++..+.+.. +.+|.+.......+ ....+.+|||+|++.+...+..+++.++++
T Consensus 10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 89 (219)
T PLN03071 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (219)
T ss_pred CCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEE
Confidence 3678999999999999999999999888876 77787765554433 347899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC-HHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030120 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
|+|||++++.++.....|+..+.... .+.|+++|+||+|+..... .+.+ .. ....+++++++||++|.|++
T Consensus 90 ilvfD~~~~~s~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-~~-----~~~~~~~~~e~SAk~~~~i~ 161 (219)
T PLN03071 90 IIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-TF-----HRKKNLQYYEISAKSNYNFE 161 (219)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhhhhccCCHHHH-HH-----HHhcCCEEEEcCCCCCCCHH
Confidence 99999999999999999988886542 5799999999999854322 2222 11 12345789999999999999
Q ss_pred HHHHHHHHHHhc
Q 030120 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~i~~~~~~ 179 (182)
++|.+|.+.+.+
T Consensus 162 ~~f~~l~~~~~~ 173 (219)
T PLN03071 162 KPFLYLARKLAG 173 (219)
T ss_pred HHHHHHHHHHHc
Confidence 999999988764
|
|
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-32 Score=179.49 Aligned_cols=161 Identities=20% Similarity=0.302 Sum_probs=125.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee--EEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEe
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
||+++|++|+|||||++++.++.+.. +.||.+.... .+... ...+.+|||||++.+...+..+++.+|++++|+|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999998876 7777765543 34443 3678999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHH
Q 030120 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWL 173 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 173 (182)
+++++++.....|+..+.+.......|+++|+||+|+.+..... .............+.+++++||++|.|++++|+.|
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l 160 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYA-LMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRV 160 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCcccccc-ccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999999998888665433457899999999985432211 11111111112234579999999999999999999
Q ss_pred HHHHhcC
Q 030120 174 SNTLKSG 180 (182)
Q Consensus 174 ~~~~~~~ 180 (182)
.+.+.+-
T Consensus 161 ~~~~~~~ 167 (170)
T cd04108 161 AALTFEL 167 (170)
T ss_pred HHHHHHc
Confidence 9877643
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-32 Score=179.47 Aligned_cols=156 Identities=20% Similarity=0.344 Sum_probs=123.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|+|||||++++.++.+.. +.+|.+... ..+... ...+.+|||||++.+...+..+++.+|++++|+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 689999999999999999999998876 666666433 233333 367899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--HHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
|+++++++.....|+..+... .....|+++|+||+|+.+... .++..+.. ...+++++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l~ 155 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTY-SWDNAQVILVGNKCDMEDERVVSSERGRQLA-----DQLGFEFFEASAKENINVKQVF 155 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCCEEEEEECcccCcccccCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHHH
Confidence 999999999999888877443 234689999999999964321 22222111 2234579999999999999999
Q ss_pred HHHHHHHhc
Q 030120 171 DWLSNTLKS 179 (182)
Q Consensus 171 ~~i~~~~~~ 179 (182)
+++.+.+.+
T Consensus 156 ~~l~~~~~~ 164 (165)
T cd01865 156 ERLVDIICD 164 (165)
T ss_pred HHHHHHHHh
Confidence 999987653
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-32 Score=179.06 Aligned_cols=157 Identities=18% Similarity=0.239 Sum_probs=123.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc-eeeEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEe
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF-NVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
+||+++|++|+|||||++++.+..+.. ..+|... ....+... ...+.+|||||++++...+..+++.+|++++|+|
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 489999999999999999999988766 4454442 22333343 3678899999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHH
Q 030120 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 171 (182)
+++++++.....|+..+.......+.|+++|+||+|+.+.. ......... ...+.+++++||++|.|++++|+
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~~ 155 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELA-----RQWGCPFLETSAKERVNVDEAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHH-----HHcCCEEEEeecCCCCCHHHHHH
Confidence 99999999999888887665554578999999999996532 222222222 12346899999999999999999
Q ss_pred HHHHHHhc
Q 030120 172 WLSNTLKS 179 (182)
Q Consensus 172 ~i~~~~~~ 179 (182)
+|.+.+..
T Consensus 156 ~l~~~~~~ 163 (164)
T smart00173 156 DLVREIRK 163 (164)
T ss_pred HHHHHHhh
Confidence 99987653
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-31 Score=176.53 Aligned_cols=157 Identities=40% Similarity=0.745 Sum_probs=128.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc-------cccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVV-------STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+|+++|++|+|||||++++.+.... ...+|.+.+...+.+.+..+.+|||||++.+...+..+++.+|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 5899999999999999999764321 246677777778888899999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCccc--ccCCceEEEEecCCCCCCHHHH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHK--IKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
+|+.+++++.....++..+.+.....+.|+++++||+|+.......++...+.... .....++++++||++|+|++++
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREG 160 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHH
Confidence 99999888888888888887655556799999999999976655555555544332 2234678999999999999999
Q ss_pred HHHHHH
Q 030120 170 MDWLSN 175 (182)
Q Consensus 170 ~~~i~~ 175 (182)
+++|.+
T Consensus 161 ~~~l~~ 166 (167)
T cd04160 161 IEWLVE 166 (167)
T ss_pred HHHHhc
Confidence 999865
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-32 Score=178.43 Aligned_cols=154 Identities=24% Similarity=0.378 Sum_probs=122.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
++|+++|++|+|||||++++.++.+.+ ..+|.+.+. ..+...+ ..+.+|||+|++.+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 489999999999999999999998876 677777544 3444444 67889999999999988999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC-HHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 171 (182)
|++++.++.....|+..+... ...+.|+++|+||.|+.+... ..+....+ .+..+++++++||++|.|++++|.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~----~~~~~~~~~e~Sa~~~~~v~~~f~ 155 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEY-APEGVQKILIGNKADEEQKRQVGDEQGNKL----AKEYGMDFFETSACTNSNIKESFT 155 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCCCHHHHHHH----HHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999988877543 234689999999999964322 11112222 122346799999999999999999
Q ss_pred HHHHH
Q 030120 172 WLSNT 176 (182)
Q Consensus 172 ~i~~~ 176 (182)
+|.+.
T Consensus 156 ~l~~~ 160 (161)
T cd04117 156 RLTEL 160 (161)
T ss_pred HHHhh
Confidence 99864
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-32 Score=186.68 Aligned_cols=163 Identities=18% Similarity=0.216 Sum_probs=125.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee-EEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
...+||+++|++|+|||||++++.++.|.. +.||++..+. .+.. ....+.+|||+|++.+...+..+++++|++++
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl 90 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 90 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence 357899999999999999999999998877 6777764432 2333 34788999999999999999999999999999
Q ss_pred EEeCCCcccHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCCCCCC---------HHHHHHHhCcccccCCce-EEEEec
Q 030120 91 VVDSSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLPGALD---------DAAVSEALELHKIKNRQW-AIFKTC 159 (182)
Q Consensus 91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~S 159 (182)
|||++++.+|... ..|+..+.... ++.|+++|+||+|+.+... ...+........++..++ .|++||
T Consensus 91 VyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtS 168 (232)
T cd04174 91 CFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECS 168 (232)
T ss_pred EEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEcc
Confidence 9999999999985 67777775432 4689999999999854210 011222222233344555 699999
Q ss_pred CCCCC-CHHHHHHHHHHHHhc
Q 030120 160 AIKGE-GLFEGMDWLSNTLKS 179 (182)
Q Consensus 160 a~~~~-~v~~l~~~i~~~~~~ 179 (182)
|++|. |++++|..+...+.+
T Consensus 169 Aktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 169 AFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred CCcCCcCHHHHHHHHHHHHHH
Confidence 99998 899999999887654
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-32 Score=181.53 Aligned_cols=159 Identities=21% Similarity=0.238 Sum_probs=121.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee-EEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
++||+++|++|+|||||++++.++.+.. +.||.+.... .+.. ....+.+|||+|++.+......+++++|++++||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 4789999999999999999999998876 6677654332 3334 3467889999999999989999999999999999
Q ss_pred eCCCcccHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCCCCCC---------HHHHHHHhCcccccCCce-EEEEecCC
Q 030120 93 DSSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLPGALD---------DAAVSEALELHKIKNRQW-AIFKTCAI 161 (182)
Q Consensus 93 d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 161 (182)
|++++.|+..+ ..|+..+.... ++.|+++|+||+|+.+... ...+........++..++ ++++|||+
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 99999999996 67777665432 5789999999999854210 001122222233334454 79999999
Q ss_pred CCCC-HHHHHHHHHHHH
Q 030120 162 KGEG-LFEGMDWLSNTL 177 (182)
Q Consensus 162 ~~~~-v~~l~~~i~~~~ 177 (182)
+|+| ++++|..+.+..
T Consensus 159 ~~~~~v~~~F~~~~~~~ 175 (178)
T cd04131 159 TSEKSVRDIFHVATMAC 175 (178)
T ss_pred cCCcCHHHHHHHHHHHH
Confidence 9995 999999998853
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-32 Score=184.91 Aligned_cols=158 Identities=23% Similarity=0.415 Sum_probs=126.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEE---CCEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQY---NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
.+||+++|++|+|||||++++.++.+.. ..+|.+.+. ..+.. ....+.+|||||++.+...+..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 5899999999999999999999988876 556666443 23333 23678999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
|||++++.++..+..|+..+.........|+++|+||+|+.+.. ..++.. .+ .+..+++++++||++|.|+++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~-~~----~~~~~~~~~e~Sak~g~~v~e 156 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAE-KL----AKDLGMKYIETSARTGDNVEE 156 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHH-HH----HHHhCCEEEEEeCCCCCCHHH
Confidence 99999999999999999888765444567899999999996532 222222 11 123447899999999999999
Q ss_pred HHHHHHHHHhc
Q 030120 169 GMDWLSNTLKS 179 (182)
Q Consensus 169 l~~~i~~~~~~ 179 (182)
+|++|.+.+.+
T Consensus 157 ~f~~l~~~~~~ 167 (211)
T cd04111 157 AFELLTQEIYE 167 (211)
T ss_pred HHHHHHHHHHH
Confidence 99999987654
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-32 Score=177.76 Aligned_cols=156 Identities=19% Similarity=0.263 Sum_probs=122.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccc-ceeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG-FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
++||+++|++|+|||||++++..+.+.. ..+|.. .....+...+ ..+.+|||||++.+...+..+++++|++++|+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 4789999999999999999999988876 455544 3333444444 46788999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--HHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
|++++.++.....|+..+.......+.|+++|+||+|+.+... ..+. ... ....+++++++||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~-~~~----~~~~~~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEG-RAL----AEEWGCPFMETSAKSKTMVNELF 155 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHH-HHH----HHHhCCEEEEecCCCCCCHHHHH
Confidence 9999999999999888887654446799999999999854321 1111 111 12234579999999999999999
Q ss_pred HHHHHHH
Q 030120 171 DWLSNTL 177 (182)
Q Consensus 171 ~~i~~~~ 177 (182)
.++.+.+
T Consensus 156 ~~l~~~l 162 (163)
T cd04176 156 AEIVRQM 162 (163)
T ss_pred HHHHHhc
Confidence 9998754
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-32 Score=182.19 Aligned_cols=157 Identities=17% Similarity=0.179 Sum_probs=122.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce-eeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEEEeC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN-VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
||+++|.+|+|||||+++|..+.+.. ..+|.+.. ...+...+ ..+.+|||||++.+...+..+++.+|++++|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 58999999999999999999888866 55555533 23334444 4588999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhccc--cCCCeEEEEEeCCCCCCCCC--HHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 95 SDTDRIQTAKEEFHAILEEEE--LKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
++..++..+..|+..+..... ..+.|+++|+||+|+.+... ..+.. ......+++++++||++|.|++++|
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~-----~~~~~~~~~~~e~SAk~~~~v~~l~ 155 (190)
T cd04144 81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGA-----ALARRLGCEFIEASAKTNVNVERAF 155 (190)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHH-----HHHHHhCCEEEEecCCCCCCHHHHH
Confidence 999999999988877754432 25689999999999954221 22211 1122334679999999999999999
Q ss_pred HHHHHHHhcC
Q 030120 171 DWLSNTLKSG 180 (182)
Q Consensus 171 ~~i~~~~~~~ 180 (182)
+++.+.+.+.
T Consensus 156 ~~l~~~l~~~ 165 (190)
T cd04144 156 YTLVRALRQQ 165 (190)
T ss_pred HHHHHHHHHh
Confidence 9999877643
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=184.35 Aligned_cols=157 Identities=22% Similarity=0.292 Sum_probs=124.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEEC---CEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN---NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+||+++|++|+|||||+++|.+..+.. +.+|.+... ..+... ...+.+|||||++.+...+..+++.+|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 589999999999999999999988876 677776443 344442 47889999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccc--cCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEEE--LKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
||+++++++.....|+..+..... ..+.|+++|+||+|+.+.. ...+.... ....+++++++||++|.|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~-----~~~~~~~~~~iSAktg~gv~ 155 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARF-----AQANGMESCLVSAKTGDRVN 155 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHH-----HHHcCCEEEEEECCCCCCHH
Confidence 999999999999888887765432 2356899999999996321 11222211 12234679999999999999
Q ss_pred HHHHHHHHHHhc
Q 030120 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~i~~~~~~ 179 (182)
++|+++.+.+..
T Consensus 156 ~lf~~l~~~l~~ 167 (215)
T cd04109 156 LLFQQLAAELLG 167 (215)
T ss_pred HHHHHHHHHHHh
Confidence 999999987753
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-32 Score=178.03 Aligned_cols=156 Identities=16% Similarity=0.212 Sum_probs=122.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce-eeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN-VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.+||+++|++|+|||||++++.+..+.. ..+|.... .......+ ..+.+|||||++.+...+..+++.+|++++|+
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 5799999999999999999999887765 44555422 22333443 57889999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--HHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
|+++..++.....|+..+.+.....+.|+++|+||+|+.+... ..+.... ....+++++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~l~ 156 (164)
T cd04145 82 SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQEL-----ARKLKIPYIETSAKDRLNVDKAF 156 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHH-----HHHcCCcEEEeeCCCCCCHHHHH
Confidence 9999999999999988887654445789999999999964321 1222111 12234579999999999999999
Q ss_pred HHHHHHH
Q 030120 171 DWLSNTL 177 (182)
Q Consensus 171 ~~i~~~~ 177 (182)
+.+.+.+
T Consensus 157 ~~l~~~~ 163 (164)
T cd04145 157 HDLVRVI 163 (164)
T ss_pred HHHHHhh
Confidence 9998764
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-31 Score=161.23 Aligned_cols=179 Identities=55% Similarity=1.047 Sum_probs=169.5
Q ss_pred ChhhHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhh
Q 030120 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRC 80 (182)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 80 (182)
|++-|++++.+.+..++.+++.+|-.++||||++..+.-+......||++++.+.+.+++..+.+||++|++..+..|.+
T Consensus 1 Mgn~~sk~~~k~f~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrh 80 (180)
T KOG0071|consen 1 MGNYMSKLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRH 80 (180)
T ss_pred CcchHHHHHHHHhCcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHh
Confidence 78889999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred hcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecC
Q 030120 81 YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
|+....++|||+|..+.++++..+..+..++......+.|+++..||-|+.+...++++.+.++....+...+.+.++++
T Consensus 81 Yy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a 160 (180)
T KOG0071|consen 81 YYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCA 160 (180)
T ss_pred hccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeecccc
Confidence 99999999999999999999999999999988877778999999999999999999999999998888899999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc
Q 030120 161 IKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 161 ~~~~~v~~l~~~i~~~~~~ 179 (182)
.+|.|+.+-+.++...+.+
T Consensus 161 ~~gdgL~eglswlsnn~~~ 179 (180)
T KOG0071|consen 161 LSGDGLKEGLSWLSNNLKE 179 (180)
T ss_pred ccchhHHHHHHHHHhhccC
Confidence 9999999999999886643
|
|
| >KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.9e-32 Score=167.87 Aligned_cols=161 Identities=19% Similarity=0.335 Sum_probs=133.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEE----CCEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
+.-+|++|+|+..+|||||+.++.+..|.+ ..+|.++....-.+ +..++++|||+|++.++...-.+++.++++|
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi 98 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence 456799999999999999999999999888 66777765443332 5588999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
+|+|.++.+|++....|...+....+ .+.|+|+++||||+.++. .+..+-....+...++.+|++||+.+.|++++
T Consensus 99 LmyDitNeeSf~svqdw~tqIktysw-~naqvilvgnKCDmd~eR---vis~e~g~~l~~~LGfefFEtSaK~NinVk~~ 174 (193)
T KOG0093|consen 99 LMYDITNEESFNSVQDWITQIKTYSW-DNAQVILVGNKCDMDSER---VISHERGRQLADQLGFEFFETSAKENINVKQV 174 (193)
T ss_pred EEEecCCHHHHHHHHHHHHHheeeec-cCceEEEEecccCCccce---eeeHHHHHHHHHHhChHHhhhcccccccHHHH
Confidence 99999999999999999988866544 689999999999996542 22333333334556678999999999999999
Q ss_pred HHHHHHHHhc
Q 030120 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~i~~~~~~ 179 (182)
|+.+.+.+.+
T Consensus 175 Fe~lv~~Ic~ 184 (193)
T KOG0093|consen 175 FERLVDIICD 184 (193)
T ss_pred HHHHHHHHHH
Confidence 9999887654
|
|
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-31 Score=176.92 Aligned_cols=157 Identities=23% Similarity=0.375 Sum_probs=124.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
.+|++++|++|+|||||++++.++.+.. ..+|.+.. ...+...+ ..+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 4799999999999999999999988766 55665543 33444443 5789999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
||+++++++..+..|+..+.... ..+.|+++|+||+|+.... ..++..... ...+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~~ 155 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEFA-----DELGIPFLETSAKNATNVEQA 155 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHHHH-----HHcCCeEEEEECCCCcCHHHH
Confidence 99999999999999888775432 2568999999999985432 222222222 233568999999999999999
Q ss_pred HHHHHHHHhc
Q 030120 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~i~~~~~~ 179 (182)
|+.|.+.+.+
T Consensus 156 ~~~i~~~~~~ 165 (166)
T cd01869 156 FMTMAREIKK 165 (166)
T ss_pred HHHHHHHHHh
Confidence 9999987753
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-31 Score=181.24 Aligned_cols=158 Identities=23% Similarity=0.364 Sum_probs=126.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
+..++|+++|++|+|||||++++.++.+.. +.+|.+... ..+...+ ..+.+|||||++.+...+..+++.+++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 457899999999999999999999988765 667776443 3344433 57889999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--HHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|+|+++++++..+..|+..+.... ...|+++|+||+|+.+... ..+..... ...+++++++||++|.|++
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~gi~ 156 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYKFA-----GQMGISLFETSAKENINVE 156 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEECCCCcCHH
Confidence 9999999999999998888775432 4689999999999965322 22222221 2234679999999999999
Q ss_pred HHHHHHHHHHhc
Q 030120 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~i~~~~~~ 179 (182)
++|++|.+.+..
T Consensus 157 ~lf~~l~~~~~~ 168 (199)
T cd04110 157 EMFNCITELVLR 168 (199)
T ss_pred HHHHHHHHHHHH
Confidence 999999987754
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.7e-31 Score=174.42 Aligned_cols=153 Identities=16% Similarity=0.239 Sum_probs=115.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEEEeC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
+||+++|++|+|||||+.++..+.+.. ..|+.+.....+.+++ ..+.+|||+|++. ..+++.+|++++|||+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~ 75 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSL 75 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEEC
Confidence 489999999999999999999888776 3343333344555655 6688999999975 3466889999999999
Q ss_pred CCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccc-cCCceEEEEecCCCCCCHHHHHHHH
Q 030120 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI-KNRQWAIFKTCAIKGEGLFEGMDWL 173 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~l~~~i 173 (182)
+++.+++.+..|+..+.......+.|+++|+||+|+.... ..++...+..... ....+.+++|||++|.||+++|..+
T Consensus 76 ~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~-~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~ 154 (158)
T cd04103 76 ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESN-PRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEA 154 (158)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC-CcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHH
Confidence 9999999999999888765444678999999999984311 1122222211111 2235789999999999999999999
Q ss_pred HHH
Q 030120 174 SNT 176 (182)
Q Consensus 174 ~~~ 176 (182)
.+.
T Consensus 155 ~~~ 157 (158)
T cd04103 155 AQK 157 (158)
T ss_pred Hhh
Confidence 864
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-31 Score=176.71 Aligned_cols=155 Identities=21% Similarity=0.236 Sum_probs=118.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee-EEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEe
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
+||+++|++|+|||||++++.++.+.. +.||.+.... .+.. ....+.+|||||++.+...+..+++.+|++++|||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999988765 5566553332 2222 44678999999999999888889999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhcc--ccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHH
Q 030120 94 SSDTDRIQTAKEEFHAILEEE--ELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~--~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 171 (182)
+++++++.....|+..+.... ...+.|+++|+||+|+.+.... ............+++++++||++|.|++++|+
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v---~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~ 158 (165)
T cd04140 82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREV---SSNEGAACATEWNCAFMETSAKTNHNVQELFQ 158 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCee---cHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Confidence 999999999888876654322 1257899999999999652211 11111111123346799999999999999999
Q ss_pred HHHH
Q 030120 172 WLSN 175 (182)
Q Consensus 172 ~i~~ 175 (182)
+|.+
T Consensus 159 ~l~~ 162 (165)
T cd04140 159 ELLN 162 (165)
T ss_pred HHHh
Confidence 9975
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-30 Score=171.39 Aligned_cols=156 Identities=37% Similarity=0.699 Sum_probs=131.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcc
Q 030120 20 ILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (182)
|+++|++|+|||||++++.+..+.. ..||.+.+...+......+.+||+||++.+...+..++..+|++++|+|+++.+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 81 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT 81 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH
Confidence 7899999999999999999998777 777888877777777899999999999999999999999999999999999988
Q ss_pred cHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHH
Q 030120 99 RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 175 (182)
++.....++..+.......+.|+++|+||+|+.+.....++.............++++++|+++|.|+++++++|.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 82 ALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 88888888888776554467899999999998765444455545443333445678999999999999999999875
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=5e-31 Score=174.02 Aligned_cols=155 Identities=17% Similarity=0.282 Sum_probs=120.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|+|||||++++.++.+.+ ..++.+... ..... ....+.+|||||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999988766 444444332 22333 3467889999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 172 (182)
|++++.++.....|+..+... .++.|+++|+||+|+.... ..+... .....+++++++||++|.|++++|+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~-~~~~~~-----~~~~~~~~~~~~Sa~~~~gv~~l~~~ 152 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSV-TQKKFN-----FAEKHNLPLYYVSAADGTNVVKLFQD 152 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhH-HHHHHH-----HHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 999999998888888777543 2468999999999984321 111111 11223568999999999999999999
Q ss_pred HHHHHhcC
Q 030120 173 LSNTLKSG 180 (182)
Q Consensus 173 i~~~~~~~ 180 (182)
+.+.+.+.
T Consensus 153 l~~~~~~~ 160 (161)
T cd04124 153 AIKLAVSY 160 (161)
T ss_pred HHHHHHhc
Confidence 99887664
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.9e-31 Score=175.88 Aligned_cols=156 Identities=21% Similarity=0.342 Sum_probs=123.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
..+||+++|++|+|||||++++.++.+.. ..|+.+... ..+...+ ..+.+||+||++.+...+..+++.++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 45799999999999999999999988765 566666433 3444444 578999999999998889999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
|+|++++.++.....|+..+.... ..+.|+++|+||+|+.... ..++..... ...+++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 155 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFA-----EKNGLSFIETSALDGTNVEE 155 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHH
Confidence 999999999999998888775543 2468999999999986432 222222222 12356799999999999999
Q ss_pred HHHHHHHHH
Q 030120 169 GMDWLSNTL 177 (182)
Q Consensus 169 l~~~i~~~~ 177 (182)
+|+.+.+.+
T Consensus 156 l~~~l~~~i 164 (165)
T cd01868 156 AFKQLLTEI 164 (165)
T ss_pred HHHHHHHHh
Confidence 999998765
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.5e-31 Score=179.00 Aligned_cols=161 Identities=19% Similarity=0.237 Sum_probs=121.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee-EEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEe
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
.||+++|++|+|||||++++.++.+.. +.||.+..+. .+..+ ...+.+|||+|++.+...+..+++.+|++++|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 379999999999999999999998876 5666654432 23333 3678999999999998888889999999999999
Q ss_pred CCCcccHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHH---------HHhCccccc-CCceEEEEecCCC
Q 030120 94 SSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDDAAVS---------EALELHKIK-NRQWAIFKTCAIK 162 (182)
Q Consensus 94 ~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~---------~~~~~~~~~-~~~~~~~~~Sa~~ 162 (182)
++++.++.... .|+..+... ..+.|+++|+||+|+.+.....+.. .......+. ...++++++||++
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 99999998886 466666433 2478999999999996543221110 011111111 2336899999999
Q ss_pred CCCHHHHHHHHHHHHhcC
Q 030120 163 GEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~~~~ 180 (182)
|.|++++|.++.+.+...
T Consensus 159 ~~~v~e~f~~l~~~~~~~ 176 (189)
T cd04134 159 NRGVNEAFTEAARVALNV 176 (189)
T ss_pred CCCHHHHHHHHHHHHhcc
Confidence 999999999999877643
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=5e-31 Score=175.20 Aligned_cols=158 Identities=18% Similarity=0.259 Sum_probs=124.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
..+||+++|++|+|||||++++.+..+.. ..++.+... ..+... ...+.+|||||++.+...+..+++.+|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 45899999999999999999999988766 445555433 334443 3678999999999988888899999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
|+|++++.++.....|+..+.... .++.|+++|+||+|+.+.. ...+..... ...+++++++||+++.|+++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~~ 156 (168)
T cd01866 83 VYDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFA-----KEHGLIFMETSAKTASNVEE 156 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence 999999999999998888775543 2578999999999996432 222322222 22356799999999999999
Q ss_pred HHHHHHHHHhc
Q 030120 169 GMDWLSNTLKS 179 (182)
Q Consensus 169 l~~~i~~~~~~ 179 (182)
+|..+.+.+.+
T Consensus 157 ~~~~~~~~~~~ 167 (168)
T cd01866 157 AFINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHHh
Confidence 99999988754
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.5e-31 Score=181.71 Aligned_cols=161 Identities=17% Similarity=0.236 Sum_probs=122.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee-EEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
++||+++|++|+|||||++++.++.+.. +.||....+. .+.+ ....+.+|||+|++.+...++.+++.+|++++||
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 3689999999999999999999988876 7777765543 3444 3467889999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH-HH--------HHHHhCcccccCCc-eEEEEecCCC
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AA--------VSEALELHKIKNRQ-WAIFKTCAIK 162 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~--------~~~~~~~~~~~~~~-~~~~~~Sa~~ 162 (182)
|++++++++.+..+|....... .++.|+++|+||+|+.+.... .. +........++..+ ++|++|||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 9999999999965454443332 257999999999999643110 01 11112222233344 4899999999
Q ss_pred CCC-HHHHHHHHHHHHh
Q 030120 163 GEG-LFEGMDWLSNTLK 178 (182)
Q Consensus 163 ~~~-v~~l~~~i~~~~~ 178 (182)
+.+ |+++|..+.....
T Consensus 160 ~~~~V~~~F~~~~~~~~ 176 (222)
T cd04173 160 SERSVRDVFHVATVASL 176 (222)
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 985 9999999888654
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=172.87 Aligned_cols=158 Identities=15% Similarity=0.317 Sum_probs=124.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...+||+++|++|+|||||++++.++.+.. ..++.+... ..+... ...+.+||+||++.+...+..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 457899999999999999999999988876 556665443 334443 467789999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccc---cCCCeEEEEEeCCCCCCC-CCHHHHHHHhCcccccCCceEEEEecCCCCCC
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEE---LKGAVALIFANKQDLPGA-LDDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~iivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
+|||+++++++.....|...+..... ..+.|+++|+||+|+.+. ...++..+... ....++++++||++|.|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~ 158 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCR----ENGDYPYFETSAKDATN 158 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHH----HCCCCeEEEEECCCCCC
Confidence 99999999999999888887765332 246899999999998642 23333333322 12234799999999999
Q ss_pred HHHHHHHHHHH
Q 030120 166 LFEGMDWLSNT 176 (182)
Q Consensus 166 v~~l~~~i~~~ 176 (182)
++++|+.+++.
T Consensus 159 v~~~~~~~~~~ 169 (170)
T cd04116 159 VAAAFEEAVRR 169 (170)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-31 Score=176.48 Aligned_cols=158 Identities=18% Similarity=0.244 Sum_probs=117.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.+|++++|++|+|||||+.++..+.+.. +.||..... ..+... ...+.+|||||++.+...+..+++++|++|+||
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 3689999999999999999999988766 666665322 233343 367889999999999999999999999999999
Q ss_pred eCCCcccHHHHHH-HHHHHHhccccCCCeEEEEEeCCCCCCCCC-HHHHHH--------HhCcccccCCc-eEEEEecCC
Q 030120 93 DSSDTDRIQTAKE-EFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSE--------ALELHKIKNRQ-WAIFKTCAI 161 (182)
Q Consensus 93 d~~~~~s~~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~--------~~~~~~~~~~~-~~~~~~Sa~ 161 (182)
|+++++++..... |+..+... .++.|+++|+||+|+.+... .+.... ..........+ ++++++||+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 158 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999999864 65555432 25799999999999954311 111111 11111112223 589999999
Q ss_pred CCCCHHHHHHHHHHH
Q 030120 162 KGEGLFEGMDWLSNT 176 (182)
Q Consensus 162 ~~~~v~~l~~~i~~~ 176 (182)
+|.|++++|+.+.+.
T Consensus 159 ~~~~i~~~f~~l~~~ 173 (174)
T cd01871 159 TQKGLKTVFDEAIRA 173 (174)
T ss_pred ccCCHHHHHHHHHHh
Confidence 999999999998864
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-31 Score=174.39 Aligned_cols=154 Identities=19% Similarity=0.336 Sum_probs=120.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+|++++|++|+|||||++++.+..+.. ..++.+... ..+... ...+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 589999999999999999999988766 555554333 333443 367889999999999888999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
|+++++++.....|+..+... ..++.|+++|+||+|+.+.. ...+...... ..+++++++||+++.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~ 154 (161)
T cd04113 81 DITNRTSFEALPTWLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFAQ-----ENGLLFLETSALTGENVEEAF 154 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHHH
Confidence 999999999998888776433 23678999999999996432 2222222221 233789999999999999999
Q ss_pred HHHHHHH
Q 030120 171 DWLSNTL 177 (182)
Q Consensus 171 ~~i~~~~ 177 (182)
+++.+.+
T Consensus 155 ~~~~~~~ 161 (161)
T cd04113 155 LKCARSI 161 (161)
T ss_pred HHHHHhC
Confidence 9998753
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-31 Score=173.60 Aligned_cols=156 Identities=22% Similarity=0.354 Sum_probs=122.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc--eeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
+.+||+++|++|+|||||++++.++.+.. ..++.+. ....+...+ ..+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 56899999999999999999999888766 4455543 334455554 578999999999988888999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--HHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+... ......... ......++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~~ 156 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYG-ASNVVLLLIGNKCDLEEQREVLFEEACTLAE----KNGMLAVLETSAKESQNVEE 156 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHH----HcCCcEEEEEECCCCCCHHH
Confidence 999999999999888888875532 35789999999999964321 122222211 12224689999999999999
Q ss_pred HHHHHHHH
Q 030120 169 GMDWLSNT 176 (182)
Q Consensus 169 l~~~i~~~ 176 (182)
+|+.+.+.
T Consensus 157 ~~~~l~~~ 164 (165)
T cd01864 157 AFLLMATE 164 (165)
T ss_pred HHHHHHHh
Confidence 99999875
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=176.44 Aligned_cols=159 Identities=20% Similarity=0.160 Sum_probs=119.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEECC--EEEEEEECCCCCCCccc--------hhhhcCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPY--------WRCYFPN 84 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~--------~~~~~~~ 84 (182)
+||+++|.+|+|||||++++.++.+.. +.||++... ..+.+++ ..+.+|||||.+.+... ....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 589999999999999999999988876 666665332 3444554 67889999997643211 2345789
Q ss_pred CCeEEEEEeCCCcccHHHHHHHHHHHHhcc--ccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecC
Q 030120 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEE--ELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
+|++++|||++++++++....|+..+.... ...+.|+++|+||+|+.... ..++..... .+..+++++++||
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~e~Sa 156 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLV----RKSWKCGYLECSA 156 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHH----HHhcCCcEEEecC
Confidence 999999999999999999988888776543 23578999999999995431 122211111 1234678999999
Q ss_pred CCCCCHHHHHHHHHHHHhcC
Q 030120 161 IKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 161 ~~~~~v~~l~~~i~~~~~~~ 180 (182)
++|.|++++|+.+.+.+...
T Consensus 157 k~g~~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 157 KYNWHILLLFKELLISATTR 176 (198)
T ss_pred CCCCCHHHHHHHHHHHhhcc
Confidence 99999999999999876654
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-31 Score=178.07 Aligned_cols=157 Identities=22% Similarity=0.396 Sum_probs=123.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc--ccccccceee--EEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIGFNVE--TVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+||+++|++|+|||||++++.+..+.. ..+|.+.... .+.+. ...+.+|||||++.+...+..+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999988753 5556654433 34443 36788999999999988888999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
+|+++.+++.....|+..+... ...+.|+++|+||+|+.... ...+..... ...+++++++||++|.|++++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~-----~~~~~~~~e~Sa~~~~~v~~l 154 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEY-AQEDVVIMLLGNKADMSGERVVKREDGERLA-----KEYGVPFMETSAKTGLNVELA 154 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccchhccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHH
Confidence 9999999999998888777553 23478999999999995321 222222221 223468999999999999999
Q ss_pred HHHHHHHHhcC
Q 030120 170 MDWLSNTLKSG 180 (182)
Q Consensus 170 ~~~i~~~~~~~ 180 (182)
|++|.+.+.+.
T Consensus 155 ~~~l~~~~~~~ 165 (191)
T cd04112 155 FTAVAKELKHR 165 (191)
T ss_pred HHHHHHHHHHh
Confidence 99999887754
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-31 Score=177.08 Aligned_cols=156 Identities=24% Similarity=0.365 Sum_probs=123.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|+|||||++++.++.+.. +.+|.+... ..+... ...+.+|||||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 589999999999999999999998876 666766433 344443 357789999999999889999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
|+++++++.....|+..+.... ..+.|+++|+||+|+.+.. ...+.. .. ....+++++++||++|.|++++|
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~-~~----~~~~~~~~~evSa~~~~~i~~~f 154 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAK-SF----CDSLNIPFFETSAKQSINVEEAF 154 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHH-HH----HHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999888776533 2458999999999986432 122211 11 12234579999999999999999
Q ss_pred HHHHHHHhc
Q 030120 171 DWLSNTLKS 179 (182)
Q Consensus 171 ~~i~~~~~~ 179 (182)
+++.+.+..
T Consensus 155 ~~l~~~~~~ 163 (188)
T cd04125 155 ILLVKLIIK 163 (188)
T ss_pred HHHHHHHHH
Confidence 999987764
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-31 Score=173.17 Aligned_cols=160 Identities=19% Similarity=0.305 Sum_probs=135.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeE--EEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET--VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
++-|||+++|++++|||-|+.++...+|.. ..+|+++.... +.+ +..+.++|||+||++++.....|++.+.+++
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl 91 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 91 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence 678999999999999999999999999887 77788866554 333 5578899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
+|+|++...+|+....|+.++.... .+++++++|+||+||... +.+..+.....+...+..++++||.++.|+++.
T Consensus 92 lVYDITr~~Tfenv~rWL~ELRdha-d~nivimLvGNK~DL~~l---raV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~a 167 (222)
T KOG0087|consen 92 LVYDITRRQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLNHL---RAVPTEDGKAFAEKEGLFFLETSALDATNVEKA 167 (222)
T ss_pred EEEechhHHHHHHHHHHHHHHHhcC-CCCeEEEEeecchhhhhc---cccchhhhHhHHHhcCceEEEecccccccHHHH
Confidence 9999999999999999999986554 368999999999999652 334444444445556678999999999999999
Q ss_pred HHHHHHHHh
Q 030120 170 MDWLSNTLK 178 (182)
Q Consensus 170 ~~~i~~~~~ 178 (182)
|..++..+.
T Consensus 168 F~~~l~~I~ 176 (222)
T KOG0087|consen 168 FERVLTEIY 176 (222)
T ss_pred HHHHHHHHH
Confidence 998887654
|
|
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-31 Score=174.72 Aligned_cols=158 Identities=25% Similarity=0.398 Sum_probs=122.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEECC--EEEEEEECCCCCCCc-cchhhhcCCCCeEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIR-PYWRCYFPNTEAVIY 90 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~-~~~~~~~~~~d~ii~ 90 (182)
.++|+++|++|+|||||++++.+..+.. ..++.+.. ...+.+.+ ..+.+|||||++.+. ..+..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5799999999999999999999988765 55666543 33444444 788999999998876 467888999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC-HHHHHHHhCcccccCCceEEEEecCCC---CCCH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIK---GEGL 166 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~v 166 (182)
|+|++++.++.....|...+.......+.|+++|+||+|+..... ..+....+. ....++++++||++ +.++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~~~~i 157 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA----DAHSMPLFETSAKDPSENDHV 157 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH----HHcCCcEEEEeccCCcCCCCH
Confidence 999999999999999888776654446799999999999864322 112222222 22347799999999 8899
Q ss_pred HHHHHHHHHHHh
Q 030120 167 FEGMDWLSNTLK 178 (182)
Q Consensus 167 ~~l~~~i~~~~~ 178 (182)
+++|..+.+.+.
T Consensus 158 ~~~f~~l~~~~~ 169 (170)
T cd04115 158 EAIFMTLAHKLK 169 (170)
T ss_pred HHHHHHHHHHhh
Confidence 999999988763
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-31 Score=173.91 Aligned_cols=152 Identities=19% Similarity=0.343 Sum_probs=120.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee--EEEEC----CEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQYN----NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
+||+++|++|+|||||++++.++.+.. ..+|.+.... .+.+. ...+.+|||||++.+...+..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 489999999999999999999988766 5666665442 23333 4689999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--HHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
|+|+++++++.....|...+.... .+.|+++|+||+|+..... .++..... ...+++++++||++|.|+++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 153 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC--GDIPMVLVQTKIDLLDQAVITNEEAEALA-----KRLQLPLFRTSVKDDFNVTE 153 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhcccccCCCHHHHHHHH-----HHcCCeEEEEECCCCCCHHH
Confidence 999999999999888887775432 4789999999999865322 22222222 22345799999999999999
Q ss_pred HHHHHHHH
Q 030120 169 GMDWLSNT 176 (182)
Q Consensus 169 l~~~i~~~ 176 (182)
++++|.+.
T Consensus 154 l~~~l~~~ 161 (162)
T cd04106 154 LFEYLAEK 161 (162)
T ss_pred HHHHHHHh
Confidence 99999764
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=179.63 Aligned_cols=160 Identities=20% Similarity=0.323 Sum_probs=127.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
+..+||+++|++|+|||||+++|.+..+.. ..+|.+.+. ..+.+.+ ..+.+|||||++.+...+..+++.+++++
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i 89 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence 467899999999999999999999988765 667766543 3444443 68899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC-HHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
+|||++++.+++....|+..+.... ..+.|+++|+||+|+..... ..+....+. ...+++++++||++|.|+++
T Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~----~~~~~~~~e~SA~~g~~v~~ 164 (216)
T PLN03110 90 LVYDITKRQTFDNVQRWLRELRDHA-DSNIVIMMAGNKSDLNHLRSVAEEDGQALA----EKEGLSFLETSALEATNVEK 164 (216)
T ss_pred EEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEEChhcccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999988887775432 35789999999999854321 122222222 23457899999999999999
Q ss_pred HHHHHHHHHhc
Q 030120 169 GMDWLSNTLKS 179 (182)
Q Consensus 169 l~~~i~~~~~~ 179 (182)
+|+.+.+.+.+
T Consensus 165 lf~~l~~~i~~ 175 (216)
T PLN03110 165 AFQTILLEIYH 175 (216)
T ss_pred HHHHHHHHHHH
Confidence 99999987754
|
|
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-30 Score=169.20 Aligned_cols=154 Identities=20% Similarity=0.341 Sum_probs=123.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+|++++|++|+|||||++++.+..+.. ..++.+... ..+.+. ...+.+|||||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999988765 556665443 333343 367899999999999888889999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC-CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 171 (182)
|++++.++.....|+..+.......+.|+++|+||+|+.... ...+..... ...+++++++||++|.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~~~~ 155 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFA-----RKHNMLFIETSAKTRDGVQQAFE 155 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHH-----HHcCCEEEEEecCCCCCHHHHHH
Confidence 999999999988888777665555689999999999996332 233322222 22456899999999999999999
Q ss_pred HHHHH
Q 030120 172 WLSNT 176 (182)
Q Consensus 172 ~i~~~ 176 (182)
.+.+.
T Consensus 156 ~~~~~ 160 (161)
T cd01863 156 ELVEK 160 (161)
T ss_pred HHHHh
Confidence 99875
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=171.96 Aligned_cols=154 Identities=20% Similarity=0.360 Sum_probs=121.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|+|||||++++.+..+.. ..++.+.. ...+.+++ ..+.+|||||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 489999999999999999999988766 55555543 34444444 56899999999999988999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
|+++++++.....|+..+..... .+.|+++++||+|+.... ...+..... ...+++++++||+++.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l~ 154 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKA-----KELNAMFIETSAKAGHNVKELF 154 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHH-----HHhCCEEEEEeCCCCCCHHHHH
Confidence 99999999999988888765432 368999999999995332 122222222 2234779999999999999999
Q ss_pred HHHHHHH
Q 030120 171 DWLSNTL 177 (182)
Q Consensus 171 ~~i~~~~ 177 (182)
+++.+.+
T Consensus 155 ~~i~~~l 161 (161)
T cd01861 155 RKIASAL 161 (161)
T ss_pred HHHHHhC
Confidence 9998753
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=166.04 Aligned_cols=159 Identities=23% Similarity=0.361 Sum_probs=132.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
+-++.+|+|++|+|||||+.+|....|.. +..|++.+ ...++. ..++++||||+|++.+..+...+++..+++++
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v 86 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV 86 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence 34578899999999999999999998887 77777744 445555 55788999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
|+|+++++||.....|+.++.... +..|-++|+||.|+.+. +.+....+...+...++.+|++|++.++|++..|
T Consensus 87 VYDVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~R---rvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF 161 (198)
T KOG0079|consen 87 VYDVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPER---RVVDTEDARAFALQMGIELFETSAKENENVEAMF 161 (198)
T ss_pred EEECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCccc---eeeehHHHHHHHHhcCchheehhhhhcccchHHH
Confidence 999999999999999999996654 47899999999998654 2333333344556677889999999999999999
Q ss_pred HHHHHHHhc
Q 030120 171 DWLSNTLKS 179 (182)
Q Consensus 171 ~~i~~~~~~ 179 (182)
.-|.+.+..
T Consensus 162 ~cit~qvl~ 170 (198)
T KOG0079|consen 162 HCITKQVLQ 170 (198)
T ss_pred HHHHHHHHH
Confidence 988876653
|
|
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=174.71 Aligned_cols=149 Identities=19% Similarity=0.311 Sum_probs=121.4
Q ss_pred EcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEE--E--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCc
Q 030120 23 LGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQ--Y--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDT 97 (182)
Q Consensus 23 ~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~--~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (182)
+|.+|+|||||+++++.+.+.. +.+|++....... + ....+.+|||+|++.+..++..+++++|++++|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 5999999999999999888876 6778775554433 3 357889999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC-CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHHH
Q 030120 98 DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 176 (182)
.++..+..|+..+.+.. .+.|+++|+||+|+.... ..+.. . .....++.+++|||++|.||+++|++|.+.
T Consensus 81 ~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-~-----~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~ 152 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSI-T-----FHRKKNLQYYDISAKSNYNFEKPFLWLARK 152 (200)
T ss_pred HHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHH-H-----HHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999998888886543 479999999999985432 22221 1 123456789999999999999999999987
Q ss_pred Hhc
Q 030120 177 LKS 179 (182)
Q Consensus 177 ~~~ 179 (182)
+.+
T Consensus 153 i~~ 155 (200)
T smart00176 153 LIG 155 (200)
T ss_pred HHh
Confidence 754
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=177.87 Aligned_cols=161 Identities=20% Similarity=0.327 Sum_probs=124.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccccee--eEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
...+||+++|++|+|||||++++.+..+....++.+... ..+... ...+.+|||||++.+...+..+++.+|++++
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl 91 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL 91 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 567899999999999999999999988877777766543 334443 3578999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhc-cccCCCeEEEEEeCCCCCCCCC--HHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEE-EELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
|+|+++.+++.....++...+.. ....+.|+++|+||+|+..... .++.... ....+++++++||+++.|++
T Consensus 92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~-----~~~~~~~~~e~SAk~~~~v~ 166 (211)
T PLN03118 92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMAL-----AKEHGCLFLECSAKTRENVE 166 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHH-----HHHcCCEEEEEeCCCCCCHH
Confidence 99999999999887655444332 2234679999999999864322 1222111 12335679999999999999
Q ss_pred HHHHHHHHHHhcC
Q 030120 168 EGMDWLSNTLKSG 180 (182)
Q Consensus 168 ~l~~~i~~~~~~~ 180 (182)
++|++|.+.+.+.
T Consensus 167 ~l~~~l~~~~~~~ 179 (211)
T PLN03118 167 QCFEELALKIMEV 179 (211)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887654
|
|
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=172.00 Aligned_cols=156 Identities=21% Similarity=0.395 Sum_probs=124.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|+|||||++++.+..+.. ..++.+... ..+...+ ..+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 589999999999999999999888765 555555433 3344444 67899999999998888999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
|++++.+++....|+..+..... ++.|+++|+||+|+.... ..+...... ...+++++++|++++.|+++++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~~l~ 154 (164)
T smart00175 81 DITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEAFA-----EEHGLPFFETSAKTNTNVEEAF 154 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999988888777755432 579999999999986532 222332222 2234679999999999999999
Q ss_pred HHHHHHHhc
Q 030120 171 DWLSNTLKS 179 (182)
Q Consensus 171 ~~i~~~~~~ 179 (182)
+.|.+.+.+
T Consensus 155 ~~i~~~~~~ 163 (164)
T smart00175 155 EELAREILK 163 (164)
T ss_pred HHHHHHHhh
Confidence 999998765
|
Rab GTPases are implicated in vesicle trafficking. |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=176.96 Aligned_cols=156 Identities=22% Similarity=0.259 Sum_probs=123.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccc-ceeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEEEe
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG-FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
+||+++|++|+|||||+++++++.+.. +.+|++ .....+.+.+ ..+.+|||+|++.+..++..++..+|++|+|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 489999999999999999999888876 566664 3344455544 678899999999988888888899999999999
Q ss_pred CCCcccHHHHHHHHHHHHhcc--------ccCCCeEEEEEeCCCCCC--CCCHHHHHHHhCcccccCCceEEEEecCCCC
Q 030120 94 SSDTDRIQTAKEEFHAILEEE--------ELKGAVALIFANKQDLPG--ALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~--------~~~~~~iivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
+++.++++....|+..+.... ...+.|+++|+||+|+.. ....+++..... ....+.++++||++|
T Consensus 81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~----~~~~~~~~evSAktg 156 (247)
T cd04143 81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVG----GDENCAYFEVSAKKN 156 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHH----hcCCCEEEEEeCCCC
Confidence 999999999998888876531 224789999999999964 223344433332 123567999999999
Q ss_pred CCHHHHHHHHHHHH
Q 030120 164 EGLFEGMDWLSNTL 177 (182)
Q Consensus 164 ~~v~~l~~~i~~~~ 177 (182)
.|++++|++|.+..
T Consensus 157 ~gI~elf~~L~~~~ 170 (247)
T cd04143 157 SNLDEMFRALFSLA 170 (247)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998854
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=167.99 Aligned_cols=155 Identities=24% Similarity=0.400 Sum_probs=124.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
++|++++|++|+|||||++++.++.+.. ..++.+.. ...+.+. ...+.+||+||++.+...+..+++.+|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 4799999999999999999999999877 66666633 3344443 46788999999998888888899999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
+|+++++++.....|+..+..... .+.|+++++||+|+.+.. ...+...... ..+++++++||++|.|++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l 154 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYAD-----ENGLLFFETSAKTGENVNEL 154 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHH
Confidence 999999999999988888765533 678999999999986322 2222222221 22367999999999999999
Q ss_pred HHHHHHHH
Q 030120 170 MDWLSNTL 177 (182)
Q Consensus 170 ~~~i~~~~ 177 (182)
++++.+.+
T Consensus 155 ~~~l~~~l 162 (163)
T cd01860 155 FTEIAKKL 162 (163)
T ss_pred HHHHHHHh
Confidence 99999876
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-31 Score=173.33 Aligned_cols=154 Identities=26% Similarity=0.427 Sum_probs=125.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeE--EEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEe
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET--VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
||+++|++++|||||++++.++.+.. ..+|.+..... +.. ....+.+||++|++.+......+++++|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999998877 66776554443 344 34678999999999998888999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHH
Q 030120 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG--ALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 171 (182)
++++.|+..+..|+..+..... .+.|+++|+||.|+.+ ....++..... ...+.+++++||+++.|+.++|.
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~~~f~ 154 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFA-----KELGVPYFEVSAKNGENVKEIFQ 154 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHH-----HHTTSEEEEEBTTTTTTHHHHHH
T ss_pred cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHH-----HHhCCEEEEEECCCCCCHHHHHH
Confidence 9999999999998888866543 4689999999999875 22333332222 22337899999999999999999
Q ss_pred HHHHHHh
Q 030120 172 WLSNTLK 178 (182)
Q Consensus 172 ~i~~~~~ 178 (182)
.+++.+.
T Consensus 155 ~~i~~i~ 161 (162)
T PF00071_consen 155 ELIRKIL 161 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998764
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-31 Score=164.13 Aligned_cols=158 Identities=23% Similarity=0.329 Sum_probs=132.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
-+||+++|+.|+|||+|++++..+-|++ ...|++.. ...+++ ++.++++|||+|+++++....+|++.+|++|++
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv 86 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence 4799999999999999999999999888 77788754 445555 567889999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 171 (182)
+|++-..+|..+.+|+.++-.... .++--|+|+||+|+.+. .++...............++++||++..|++.+|.
T Consensus 87 ydiscqpsfdclpewlreie~yan-~kvlkilvgnk~d~~dr---revp~qigeefs~~qdmyfletsakea~nve~lf~ 162 (213)
T KOG0095|consen 87 YDISCQPSFDCLPEWLREIEQYAN-NKVLKILVGNKIDLADR---REVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFL 162 (213)
T ss_pred EecccCcchhhhHHHHHHHHHHhh-cceEEEeeccccchhhh---hhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHH
Confidence 999999999999999999865543 46677999999998654 45555555555555666799999999999999998
Q ss_pred HHHHHHh
Q 030120 172 WLSNTLK 178 (182)
Q Consensus 172 ~i~~~~~ 178 (182)
.+.-.+.
T Consensus 163 ~~a~rli 169 (213)
T KOG0095|consen 163 DLACRLI 169 (213)
T ss_pred HHHHHHH
Confidence 8876543
|
|
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=168.36 Aligned_cols=159 Identities=16% Similarity=0.294 Sum_probs=122.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|+|||||++++.+..+.. ..++.+... ..+.+.+ ..+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 589999999999999999999988765 445555333 3344443 56679999999999989999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccc---cCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEE---LKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~---~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
|+.+++++.....|...+..... ..+.|+++|+||+|+..+ ...++...... .....+++++||++|.|++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~ 156 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQ----SNGNIPYFETSAKEAINVE 156 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHH----HcCCceEEEEECCCCCCHH
Confidence 99999988888777776655432 236899999999999732 22333332222 2223679999999999999
Q ss_pred HHHHHHHHHHhcC
Q 030120 168 EGMDWLSNTLKSG 180 (182)
Q Consensus 168 ~l~~~i~~~~~~~ 180 (182)
++++++.+.+.+.
T Consensus 157 ~l~~~i~~~~~~~ 169 (172)
T cd01862 157 QAFETIARKALEQ 169 (172)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999876653
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-30 Score=170.67 Aligned_cols=157 Identities=16% Similarity=0.211 Sum_probs=122.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce-eeEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN-VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.+|++++|++|+|||||++++.++.+.. ..+|.+.. ...+... ...+.+|||||++.+..++..+++.++++++|+
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 3689999999999999999999888766 55555533 2334443 368899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
|+++++++.....|...+.......+.|+++++||.|+.... ..++...... .....+++++||+++.|++++|
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~~~SA~~~~~i~~~f 156 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQ----QWGNVPFYETSARKRTNVDEVF 156 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHH----HcCCceEEEeeCCCCCCHHHHH
Confidence 999999999998888877654444679999999999986432 1222221111 1123679999999999999999
Q ss_pred HHHHHHH
Q 030120 171 DWLSNTL 177 (182)
Q Consensus 171 ~~i~~~~ 177 (182)
+++...+
T Consensus 157 ~~i~~~~ 163 (168)
T cd04177 157 IDLVRQI 163 (168)
T ss_pred HHHHHHH
Confidence 9998765
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-30 Score=173.83 Aligned_cols=160 Identities=18% Similarity=0.226 Sum_probs=120.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc--cccccccee--eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+||+++|++|+|||||++++.++.+.. +.+|.+... ..+...+ ..+.+|||||++.+...+..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999988764 666666433 3455544 5667999999999988888899999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC-HHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
||++++.++.....|+..+... ..+.|+++|+||+|+.+... ...+............+++++++||+++.|++++|
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 158 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELF 158 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999998888888776543 24689999999999854321 11111100011112334679999999999999999
Q ss_pred HHHHHHHhc
Q 030120 171 DWLSNTLKS 179 (182)
Q Consensus 171 ~~i~~~~~~ 179 (182)
+++.+.+.+
T Consensus 159 ~~i~~~~~~ 167 (193)
T cd04118 159 QKVAEDFVS 167 (193)
T ss_pred HHHHHHHHH
Confidence 999987653
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-30 Score=170.79 Aligned_cols=154 Identities=22% Similarity=0.317 Sum_probs=118.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC--Cccc-cccccccee--eEEEE---CCEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMG--EVVS-TIPTIGFNV--ETVQY---NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~--~~~~-~~~t~~~~~--~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
+||+++|++|+|||||++++... .+.. +.+|.+... ..+.. ....+.+|||||++.+..++..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 4544 666666443 23333 3478999999999988888899999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH-HHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
+|+|++++.++.....|+..+.... .+.|+++|+||+|+.+.... .+..... ....+++++++||+++.|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~gi~~ 154 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAF----AQANQLKFFKTSALRGVGYEE 154 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHH----HHHcCCeEEEEeCCCCCChHH
Confidence 9999999999988888887765442 46899999999999644221 1111111 122346799999999999999
Q ss_pred HHHHHHHHH
Q 030120 169 GMDWLSNTL 177 (182)
Q Consensus 169 l~~~i~~~~ 177 (182)
+|+.+.+.+
T Consensus 155 l~~~l~~~~ 163 (164)
T cd04101 155 PFESLARAF 163 (164)
T ss_pred HHHHHHHHh
Confidence 999998864
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=173.95 Aligned_cols=155 Identities=19% Similarity=0.251 Sum_probs=118.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee-EEEEC---CEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQYN---NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|+|||||++++.++.+.. +.+|.+..+. .+... ...+.+|||||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 589999999999999999999998876 5566554432 23332 457899999999999988999999999999999
Q ss_pred eCCCcccHHHHHH-HHHHHHhccccCCCeEEEEEeCCCCCCCC------CHHHHHHHhCcccccCCce-EEEEecCCCCC
Q 030120 93 DSSDTDRIQTAKE-EFHAILEEEELKGAVALIFANKQDLPGAL------DDAAVSEALELHKIKNRQW-AIFKTCAIKGE 164 (182)
Q Consensus 93 d~~~~~s~~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 164 (182)
|+++..+++.... |+..+... .++.|+++|+||+|+.+.. ...+.... ....+. +++++||++|.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~e~Sa~~~~ 153 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESV-----AKKQGAFAYLECSAKTME 153 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHH-----HHHcCCcEEEEccCCCCC
Confidence 9999999988864 55555332 2578999999999986432 11121111 122233 79999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 030120 165 GLFEGMDWLSNTLKS 179 (182)
Q Consensus 165 ~v~~l~~~i~~~~~~ 179 (182)
|++++|+.+.+.+..
T Consensus 154 ~v~~~f~~l~~~~~~ 168 (187)
T cd04132 154 NVEEVFDTAIEEALK 168 (187)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999987654
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-30 Score=160.75 Aligned_cols=160 Identities=21% Similarity=0.315 Sum_probs=133.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
+.-+|++++|+.|+|||+|+.+|...++.. ...|+++. ...+.+ +.+++++|||+|+++++.....|++.+.+.+
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAl 86 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 86 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceE
Confidence 456899999999999999999999998877 55677644 344444 5688999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
+|+|+++.++|+.+..|+.+... ...+++-+++++||.|+... .++.-.++..+++.....+.++|+++|+|+++.
T Consensus 87 LVYD~TsrdsfnaLtnWL~DaR~-lAs~nIvviL~GnKkDL~~~---R~VtflEAs~FaqEnel~flETSa~TGeNVEEa 162 (214)
T KOG0086|consen 87 LVYDITSRDSFNALTNWLTDART-LASPNIVVILCGNKKDLDPE---REVTFLEASRFAQENELMFLETSALTGENVEEA 162 (214)
T ss_pred EEEeccchhhHHHHHHHHHHHHh-hCCCcEEEEEeCChhhcChh---hhhhHHHHHhhhcccceeeeeecccccccHHHH
Confidence 99999999999999999988844 34467889999999999644 455555555555666678999999999999999
Q ss_pred HHHHHHHHh
Q 030120 170 MDWLSNTLK 178 (182)
Q Consensus 170 ~~~i~~~~~ 178 (182)
|-...+.+.
T Consensus 163 Fl~c~~tIl 171 (214)
T KOG0086|consen 163 FLKCARTIL 171 (214)
T ss_pred HHHHHHHHH
Confidence 987766553
|
|
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-30 Score=171.05 Aligned_cols=158 Identities=17% Similarity=0.232 Sum_probs=116.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCC
Q 030120 20 ILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (182)
|+++|++|+|||||++++.++.+.. +.++..... ..+...+ ..+.+|||||++.+...+..+++.+|++++|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 5899999999999999999988866 555554332 2333333 56899999999999988999999999999999999
Q ss_pred CcccHHHHHH-HHHHHHhccccCCCeEEEEEeCCCCCCCCCH-HH--------HHHHhCcccccCCc-eEEEEecCCCCC
Q 030120 96 DTDRIQTAKE-EFHAILEEEELKGAVALIFANKQDLPGALDD-AA--------VSEALELHKIKNRQ-WAIFKTCAIKGE 164 (182)
Q Consensus 96 ~~~s~~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~--------~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 164 (182)
+++++..... |+..+.... ++.|+++|+||+|+.+.... .. +............+ .+++++||++|.
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFC--PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhC--CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999998864 666554332 57999999999999643211 00 11111111122233 479999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 030120 165 GLFEGMDWLSNTLKS 179 (182)
Q Consensus 165 ~v~~l~~~i~~~~~~ 179 (182)
|++++|+.+.+.+..
T Consensus 159 ~v~~lf~~l~~~~~~ 173 (174)
T smart00174 159 GVREVFEEAIRAALN 173 (174)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999987643
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-30 Score=158.30 Aligned_cols=167 Identities=35% Similarity=0.660 Sum_probs=155.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEe
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
..+..+.++|-.++|||||+|.+..+.+.+ ..||.+++...++-....+.+||.||+..++.+|..|++.+++++||+|
T Consensus 18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VD 97 (186)
T KOG0075|consen 18 KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVD 97 (186)
T ss_pred HheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEee
Confidence 678899999999999999999999988877 8899999999999999999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHH
Q 030120 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWL 173 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 173 (182)
+.+++.....+..+..++......++|+++.+||.|+.+.-....+.+.+.........+.+|.+||++..|++.+.+++
T Consensus 98 aad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wl 177 (186)
T KOG0075|consen 98 AADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWL 177 (186)
T ss_pred cCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHH
Confidence 99999999999999999998888899999999999999888888888888888778888999999999999999999999
Q ss_pred HHHHhcCC
Q 030120 174 SNTLKSGG 181 (182)
Q Consensus 174 ~~~~~~~~ 181 (182)
.++....+
T Consensus 178 i~hsk~~~ 185 (186)
T KOG0075|consen 178 IEHSKSLR 185 (186)
T ss_pred HHHhhhhc
Confidence 99866543
|
|
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=166.44 Aligned_cols=157 Identities=17% Similarity=0.254 Sum_probs=123.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEe
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
+||+++|++|+|||||++++....+.. ..+++.... ..... ....+.+||+||++.+...+..+++.++++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 589999999999999999999888766 455544332 22333 34678999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHH
Q 030120 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 171 (182)
+.++.++.....|+..+.......+.|+++|+||+|+.+. ....+..... ...+++++++||++|.|++++|+
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~ 155 (164)
T cd04139 81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLA-----RQWGVPYVETSAKTRQNVEKAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHH-----HHhCCeEEEeeCCCCCCHHHHHH
Confidence 9999999999999888877654467999999999999652 1222222211 12345799999999999999999
Q ss_pred HHHHHHhc
Q 030120 172 WLSNTLKS 179 (182)
Q Consensus 172 ~i~~~~~~ 179 (182)
.+.+.+.+
T Consensus 156 ~l~~~~~~ 163 (164)
T cd04139 156 DLVREIRQ 163 (164)
T ss_pred HHHHHHHh
Confidence 99987753
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-30 Score=170.15 Aligned_cols=159 Identities=18% Similarity=0.201 Sum_probs=116.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce-eeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEEEe
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN-VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
+||+++|++|+|||||++++.++.+.. ..++.... ...+...+ ..+.+|||||++.+...+..+++.+|++++|+|
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 589999999999999999999988876 55555422 22334433 557899999999999889999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHH-H--------HHHhCcccccCCc-eEEEEecCCCC
Q 030120 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAA-V--------SEALELHKIKNRQ-WAIFKTCAIKG 163 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~-~--------~~~~~~~~~~~~~-~~~~~~Sa~~~ 163 (182)
+.++.++......+...+... .++.|+++|+||+|+.+...... + ............+ .+++++||++|
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 159 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ 159 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence 999999988865444433333 46799999999999854321111 0 0011111111222 46999999999
Q ss_pred CCHHHHHHHHHHHH
Q 030120 164 EGLFEGMDWLSNTL 177 (182)
Q Consensus 164 ~~v~~l~~~i~~~~ 177 (182)
.|++++|+.+++.+
T Consensus 160 ~gi~~~f~~~~~~~ 173 (174)
T cd04135 160 KGLKTVFDEAILAI 173 (174)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998765
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=166.84 Aligned_cols=160 Identities=13% Similarity=0.171 Sum_probs=115.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccccccccce-eeEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFN-VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~-~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
+|++++|++|+|||||++++.++.+....+++... .....+ ...++.+|||||++.+...+..+++.+|++++|+|+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 48999999999999999999998886643332211 122222 557889999999988877778888999999999999
Q ss_pred CCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCc-eEEEEecCCCCCCHHHHHHHH
Q 030120 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQ-WAIFKTCAIKGEGLFEGMDWL 173 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~i 173 (182)
+++.++.....+|...++... .+.|+++|+||+|+.+.................... .+++++||+++.|++++|+.+
T Consensus 81 ~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~ 159 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYA 159 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHH
Confidence 999999887654444444332 478999999999996543321111111000001111 369999999999999999999
Q ss_pred HHHHh
Q 030120 174 SNTLK 178 (182)
Q Consensus 174 ~~~~~ 178 (182)
.+.+.
T Consensus 160 ~~~~~ 164 (166)
T cd01893 160 QKAVL 164 (166)
T ss_pred HHHhc
Confidence 88764
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=163.46 Aligned_cols=160 Identities=23% Similarity=0.373 Sum_probs=136.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEE---CCEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQY---NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
..++++++|++-+|||||++.+..+++.+ ..||.+.+. ..++. ...++++|||+|+++++....+|++++-+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 56899999999999999999999999998 788888543 22333 4578899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCC-eEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGA-VALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
+|+|.++..||+....|+++.......+.+ -..+|++|+|+... .++..++++..+...++.++++||++|.||++
T Consensus 87 lvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq---RqVt~EEaEklAa~hgM~FVETSak~g~NVeE 163 (213)
T KOG0091|consen 87 LVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ---RQVTAEEAEKLAASHGMAFVETSAKNGCNVEE 163 (213)
T ss_pred EEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh---ccccHHHHHHHHHhcCceEEEecccCCCcHHH
Confidence 999999999999999999888666554554 45789999999643 56677777777788889999999999999999
Q ss_pred HHHHHHHHHh
Q 030120 169 GMDWLSNTLK 178 (182)
Q Consensus 169 l~~~i~~~~~ 178 (182)
.|..+.+.+.
T Consensus 164 AF~mlaqeIf 173 (213)
T KOG0091|consen 164 AFDMLAQEIF 173 (213)
T ss_pred HHHHHHHHHH
Confidence 9999987654
|
|
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=174.06 Aligned_cols=159 Identities=18% Similarity=0.266 Sum_probs=124.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
+..+||+++|++|+|||||++++.+..+.. ..+|.+... ..+...+ ..+.+|||+|++.+...+..+++.+|+++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 456899999999999999999999988766 556666443 3344433 56789999999999888899999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|+|+++..++.....|+..+.... ..+.|+++|+||+|+.+.. ...+..... ...+++++++||+++.|++
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~ 157 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFA-----KEHGLIFMEASAKTAQNVE 157 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 9999999999999888887765432 2578999999999996432 222222222 2235689999999999999
Q ss_pred HHHHHHHHHHhc
Q 030120 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~i~~~~~~ 179 (182)
++|.++.+.+.+
T Consensus 158 e~f~~l~~~~~~ 169 (210)
T PLN03108 158 EAFIKTAAKIYK 169 (210)
T ss_pred HHHHHHHHHHHH
Confidence 999999887653
|
|
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-30 Score=170.27 Aligned_cols=156 Identities=15% Similarity=0.193 Sum_probs=113.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccc-ceeeEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEe
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG-FNVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
+|++++|++|+|||||++++.++.+.. +.+|.. .....+..+ ...+.+|||||++.+...+..+++++|++++|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 589999999999999999999888776 444442 212233343 3677899999999999999999999999999999
Q ss_pred CCCcccHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCCCC---------HHHHHHHhCcccccCCc-eEEEEecCCC
Q 030120 94 SSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALD---------DAAVSEALELHKIKNRQ-WAIFKTCAIK 162 (182)
Q Consensus 94 ~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 162 (182)
++++.++.... .|+..+... ..+.|+++|+||+|+.+... ...+............+ .+++++||++
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 99999998875 455555432 24689999999999864321 00111111111112223 4799999999
Q ss_pred CCCHHHHHHHHHH
Q 030120 163 GEGLFEGMDWLSN 175 (182)
Q Consensus 163 ~~~v~~l~~~i~~ 175 (182)
|.|++++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998763
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=168.31 Aligned_cols=157 Identities=17% Similarity=0.140 Sum_probs=120.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-c-cccccccee--eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVV-S-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~-~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
++.+|++++|++|+|||||++++.++.+. . +.||.+... ..+...+ ..+.+||++|++.+...+..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 57899999999999999999999999886 4 677776443 3444544 6788999999999988889999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--HHHHHHHhCcccccCCce-EEEEecCCCCCC
Q 030120 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQW-AIFKTCAIKGEG 165 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 165 (182)
++|+|++++.++.....|+..+... .+.|+++|+||+|+.+... ..+.. .+. ...++ .++++||+++.|
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~-~~~----~~~~~~~~~~~Sa~~~~~ 153 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML---GEIPCLFVAAKADLDEQQQRYEVQPD-EFC----RKLGLPPPLHFSSKLGDS 153 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC---CCCeEEEEEEcccccccccccccCHH-HHH----HHcCCCCCEEEEeccCcc
Confidence 9999999998888887777655222 3689999999999854321 11111 111 11112 368999999999
Q ss_pred HHHHHHHHHHHHhc
Q 030120 166 LFEGMDWLSNTLKS 179 (182)
Q Consensus 166 v~~l~~~i~~~~~~ 179 (182)
++++|+.+.+.+..
T Consensus 154 v~~lf~~l~~~~~~ 167 (169)
T cd01892 154 SNELFTKLATAAQY 167 (169)
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999987654
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=166.92 Aligned_cols=154 Identities=23% Similarity=0.320 Sum_probs=119.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc--eeeEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+|++++|++|+|||||++++.+..+.. ..++... ....+... ...+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 589999999999999999999988765 4444432 23334433 357899999999998888999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
|+++++++.....|+..+..... .+.|+++++||+|+.... ...++.... ...+++++++|++++.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gi~~~~ 154 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYA-----KSVGAKHFETSAKTGKGIEELF 154 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999888888777755433 378999999999986432 222332222 2235678999999999999999
Q ss_pred HHHHHHH
Q 030120 171 DWLSNTL 177 (182)
Q Consensus 171 ~~i~~~~ 177 (182)
+++.+.+
T Consensus 155 ~~l~~~~ 161 (162)
T cd04123 155 LSLAKRM 161 (162)
T ss_pred HHHHHHh
Confidence 9998764
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=168.51 Aligned_cols=155 Identities=15% Similarity=0.205 Sum_probs=115.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc-eeeEEEEC--CEEEEEEECCCCCC-CccchhhhcCCCCeEEEEEe
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF-NVETVQYN--NIKFQVWDLGGQTS-IRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~~--~~~~~~~D~~g~~~-~~~~~~~~~~~~d~ii~v~d 93 (182)
||+++|++|+|||||+++++.+.+.. +.++... ....+... ...+.+|||||++. .......+++.+|++++|+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 58999999999999999999887765 4455432 22333343 35688999999985 34456778899999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccc-cCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCC-CHHHH
Q 030120 94 SSDTDRIQTAKEEFHAILEEEE-LKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGE-GLFEG 169 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~l 169 (182)
++++.+++....|+..+..... ..+.|+++|+||+|+.... ...+.... ....+++++++||+++. |++++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~e~Sa~~~~~~v~~~ 155 (165)
T cd04146 81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKL-----ASELGCLFFEVSAAEDYDGVHSV 155 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHH-----HHHcCCEEEEeCCCCCchhHHHH
Confidence 9999999999888776655332 3579999999999985331 12221111 12234679999999995 99999
Q ss_pred HHHHHHHHh
Q 030120 170 MDWLSNTLK 178 (182)
Q Consensus 170 ~~~i~~~~~ 178 (182)
|..+.+.+.
T Consensus 156 f~~l~~~~~ 164 (165)
T cd04146 156 FHELCREVR 164 (165)
T ss_pred HHHHHHHHh
Confidence 999998764
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=173.60 Aligned_cols=154 Identities=17% Similarity=0.123 Sum_probs=116.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-c-cccccc--ceeeEEEE--CCEEEEEEECCCCCCCccchhhhcC-CCCeEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVV-S-TIPTIG--FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFP-NTEAVIY 90 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~-~-~~~t~~--~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~-~~d~ii~ 90 (182)
+||+++|++|+|||||++++.++.+. . ..++.+ .....+.+ ....+.+|||||++ ......++. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999887775 3 555553 34444555 45778999999998 223344556 8999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--HHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
|||++++.++.....|+..+.......+.|+++|+||+|+.+... .++.. . .+...+++++++||+++.|+++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~-~----~a~~~~~~~~e~SA~~~~gv~~ 153 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGR-A----CAVVFDCKFIETSAGLQHNVDE 153 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHH-H----HHHHcCCeEEEecCCCCCCHHH
Confidence 999999999999888888776544345799999999999854321 11111 1 1122356799999999999999
Q ss_pred HHHHHHHHHh
Q 030120 169 GMDWLSNTLK 178 (182)
Q Consensus 169 l~~~i~~~~~ 178 (182)
+|+++.+.+.
T Consensus 154 l~~~l~~~~~ 163 (221)
T cd04148 154 LLEGIVRQIR 163 (221)
T ss_pred HHHHHHHHHH
Confidence 9999998775
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-29 Score=168.93 Aligned_cols=159 Identities=18% Similarity=0.226 Sum_probs=122.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc-cccccc-ceeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEEEeC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG-FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
||+++|++|+|||||+++++++.+.. +.+|.. .....+.+.+ ..+.+||+||+..+..++..++..+|++++|+|+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 68999999999999999999988776 444443 3444455555 6789999999999988888899999999999999
Q ss_pred CCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHH
Q 030120 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 174 (182)
+++.++.....|+..+.......+.|+++|+||+|+................ ....+.+++++||++|.|++++|+++.
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~-~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTV-ELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHH-HhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999998888887765554579999999999986421111111111111 112335799999999999999999999
Q ss_pred HHHh
Q 030120 175 NTLK 178 (182)
Q Consensus 175 ~~~~ 178 (182)
+.+.
T Consensus 160 ~~~~ 163 (198)
T cd04147 160 RQAN 163 (198)
T ss_pred HHhh
Confidence 8765
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=171.41 Aligned_cols=156 Identities=15% Similarity=0.198 Sum_probs=112.3
Q ss_pred ccEEEEEcCCCCCHHHHHH-HHhcCCc-----cc-ccccccc-e-ee-----------EEEECCEEEEEEECCCCCCCcc
Q 030120 17 EARILVLGLDNAGKTTILY-RLQMGEV-----VS-TIPTIGF-N-VE-----------TVQYNNIKFQVWDLGGQTSIRP 76 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~-~l~~~~~-----~~-~~~t~~~-~-~~-----------~~~~~~~~~~~~D~~g~~~~~~ 76 (182)
.+||+++|++|+|||||+. ++.++.+ .. +.||++. . +. .+......+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999996 5655433 22 5566642 1 11 1112357889999999875 2
Q ss_pred chhhhcCCCCeEEEEEeCCCcccHHHHHH-HHHHHHhccccCCCeEEEEEeCCCCCCCCC----------------HHHH
Q 030120 77 YWRCYFPNTEAVIYVVDSSDTDRIQTAKE-EFHAILEEEELKGAVALIFANKQDLPGALD----------------DAAV 139 (182)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------------~~~~ 139 (182)
....+++++|++++|||++++.|+..... |+..+.... ++.|+++|+||+|+.+... ...+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 45568899999999999999999999874 666654332 4789999999999864210 1222
Q ss_pred HHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHHH
Q 030120 140 SEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 176 (182)
........++..++++++|||++|.||+++|+.+++.
T Consensus 158 ~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 2333333444566789999999999999999998864
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.8e-29 Score=164.55 Aligned_cols=158 Identities=23% Similarity=0.342 Sum_probs=120.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccc--ceeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...++++++|++|+|||||++++.++.+.. ..++.+ .....+.+.+ ..+.+||+||++.+...+..++..+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 356899999999999999999999877665 555555 3333445544 56889999999999888889999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC-HHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
+|+|+.++.++.....|+..+... ...+.|+++|+||+|+.+... ..+....+. ....++++++||++|.|+++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~ 159 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEEFS----DAQDMYYLETSAKESDNVEK 159 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHH----HHcCCeEEEeeCCCCCCHHH
Confidence 999999998888888877665432 234689999999999864322 122222221 22236799999999999999
Q ss_pred HHHHHHHHH
Q 030120 169 GMDWLSNTL 177 (182)
Q Consensus 169 l~~~i~~~~ 177 (182)
+|++|.+.+
T Consensus 160 l~~~i~~~~ 168 (169)
T cd04114 160 LFLDLACRL 168 (169)
T ss_pred HHHHHHHHh
Confidence 999998764
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-28 Score=160.67 Aligned_cols=151 Identities=23% Similarity=0.380 Sum_probs=121.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEE----CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|+|||||++++.+..+.. ..+|.+........ ....+.+||+||+..+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 589999999999999999999998877 46666655544333 3478899999999988888999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC--CCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP--GALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
|+++++++.....|+..+..... ...|+++++||+|+. .....++...... ..+.+++++||+++.|+++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~ 154 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAP-ENIPIILVGNKIDLEDQRQVSTEEAQQFAK-----ENGLLFFETSAKTGENVEELF 154 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEEcccccccccccHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHH
Confidence 99999888888888777765432 468999999999995 2223333333322 246789999999999999999
Q ss_pred HHHH
Q 030120 171 DWLS 174 (182)
Q Consensus 171 ~~i~ 174 (182)
++|.
T Consensus 155 ~~i~ 158 (159)
T cd00154 155 QSLA 158 (159)
T ss_pred HHHh
Confidence 9886
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.1e-29 Score=166.62 Aligned_cols=157 Identities=20% Similarity=0.262 Sum_probs=124.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc-eeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEEEe
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF-NVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
.||+++|++|+|||||++++.+..+.. ..|+... ....+...+ ..+.+|||||++.+...+..++..++++++|+|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 589999999999999999999888766 5555543 234444443 567899999999998888899999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHH
Q 030120 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 171 (182)
.++..+++....++..+.......+.|+++|+||+|+.... ...+..... ...+++++++||+++.|+.++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l~~ 156 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELA-----ESWGAAFLESSARENENVEEAFE 156 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999988876655678999999999986422 122221111 22336799999999999999999
Q ss_pred HHHHHHhc
Q 030120 172 WLSNTLKS 179 (182)
Q Consensus 172 ~i~~~~~~ 179 (182)
++.+.+..
T Consensus 157 ~l~~~~~~ 164 (180)
T cd04137 157 LLIEEIEK 164 (180)
T ss_pred HHHHHHHH
Confidence 99987654
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-28 Score=164.47 Aligned_cols=157 Identities=18% Similarity=0.273 Sum_probs=113.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce-eeEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEe
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN-VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
+||+++|++|+|||||+++|.+..+.. ..++.... ...+.. ....+.+||+||++.+......+++.+|++++|+|
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 589999999999999999999988744 44444322 222222 34678999999999888888888899999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHH--------HHHHhCcccccCCc-eEEEEecCCCCC
Q 030120 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAA--------VSEALELHKIKNRQ-WAIFKTCAIKGE 164 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~--------~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 164 (182)
++++.++......+...+.... .+.|+++|+||+|+.+...... +............+ .+++++||++|.
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE 159 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence 9998888777654444333322 4799999999999975533211 11111111112223 389999999999
Q ss_pred CHHHHHHHHHH
Q 030120 165 GLFEGMDWLSN 175 (182)
Q Consensus 165 ~v~~l~~~i~~ 175 (182)
|++++++++.+
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999999875
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-28 Score=162.40 Aligned_cols=159 Identities=16% Similarity=0.275 Sum_probs=116.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+.||+++|++|+|||||++++.++.+.. +.||..... ..+.+. ...+.+|||||++.+...+..++..+|++++|+
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 3689999999999999999999988876 656665332 344443 357789999999998888888889999999999
Q ss_pred eCCCcccHHHHHH-HHHHHHhccccCCCeEEEEEeCCCCCCCCCH-HHHHH--------HhCcccc-cCCceEEEEecCC
Q 030120 93 DSSDTDRIQTAKE-EFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSE--------ALELHKI-KNRQWAIFKTCAI 161 (182)
Q Consensus 93 d~~~~~s~~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~--------~~~~~~~-~~~~~~~~~~Sa~ 161 (182)
|+++.+++..... |...+... ..+.|+++|+||+|+.+.... ..+.. ....... .....++++|||+
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 158 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK 158 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence 9999998888764 44444332 247899999999998643211 11110 0000001 1123479999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 030120 162 KGEGLFEGMDWLSNTL 177 (182)
Q Consensus 162 ~~~~v~~l~~~i~~~~ 177 (182)
+|.|++++|+++.+..
T Consensus 159 ~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 159 TKEGVREVFEMATRAA 174 (175)
T ss_pred cCcCHHHHHHHHHHHh
Confidence 9999999999998753
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=162.09 Aligned_cols=154 Identities=19% Similarity=0.253 Sum_probs=120.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc-eeeEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF-NVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
||+++|++|+|||||++++.+..+.. ..++... ....+... ...+.+||+||++.+...+..+++.+|++++|+|+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 68999999999999999999887665 4555442 22233344 46789999999999888889999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHH
Q 030120 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 172 (182)
++++++.....++..+.........|+++|+||+|+.+.. ..++...... ..+.+++++|++++.|+++++++
T Consensus 81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~l~~~ 155 (160)
T cd00876 81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAK-----EWGCPFIETSAKDNINIDEVFKL 155 (160)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHH-----HcCCcEEEeccCCCCCHHHHHHH
Confidence 9999999999888888776544679999999999997521 1222222221 22267999999999999999999
Q ss_pred HHHHH
Q 030120 173 LSNTL 177 (182)
Q Consensus 173 i~~~~ 177 (182)
|.+.+
T Consensus 156 l~~~i 160 (160)
T cd00876 156 LVREI 160 (160)
T ss_pred HHhhC
Confidence 98753
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-29 Score=157.90 Aligned_cols=161 Identities=20% Similarity=0.273 Sum_probs=131.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccc--ceeeEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...||++++|...+|||||+-++...+|.. ..+|.. +....+.+ ...++.+|||+|++++..+-+-|++.+++++
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal 90 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL 90 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence 567899999999999999999999888766 333333 33333333 5578899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
+|||+++.+||+....|..++..-.+ ..+-+++|+||+|+.++ ..+....++..+...+..++++||+.+.||.++
T Consensus 91 LVyDITDrdSFqKVKnWV~Elr~mlG-nei~l~IVGNKiDLEee---R~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~el 166 (218)
T KOG0088|consen 91 LVYDITDRDSFQKVKNWVLELRTMLG-NEIELLIVGNKIDLEEE---RQVTRQEAEAYAESVGALYMETSAKDNVGISEL 166 (218)
T ss_pred EEEeccchHHHHHHHHHHHHHHHHhC-CeeEEEEecCcccHHHh---hhhhHHHHHHHHHhhchhheecccccccCHHHH
Confidence 99999999999999999998866544 56889999999999643 444445555555666777999999999999999
Q ss_pred HHHHHHHHhc
Q 030120 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~i~~~~~~ 179 (182)
|+.+...+.+
T Consensus 167 Fe~Lt~~MiE 176 (218)
T KOG0088|consen 167 FESLTAKMIE 176 (218)
T ss_pred HHHHHHHHHH
Confidence 9998877654
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=163.81 Aligned_cols=163 Identities=20% Similarity=0.315 Sum_probs=129.3
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEE----CCEEEEEEECCCCCCCccchhhhcCCCC
Q 030120 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 12 ~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d 86 (182)
......+|++++|++|+|||||++++..+.+.. +.+|.+.......+ ....+.+|||+|++.+...+..++..++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 445678999999999999999999888777765 77777766655443 4578899999999999888888999999
Q ss_pred eEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030120 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
++++|+|+++..++.....|+..+.... .+.|+++++||+|+.+.....+.... ....++.++++||++|.|+
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~~v 156 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQITF-----HRKKNLQYYDISAKSNYNF 156 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHHH-----HHHcCCEEEEEeCCCCCCH
Confidence 9999999999999999988888776442 46899999999998643222222111 1234567999999999999
Q ss_pred HHHHHHHHHHHhcCC
Q 030120 167 FEGMDWLSNTLKSGG 181 (182)
Q Consensus 167 ~~l~~~i~~~~~~~~ 181 (182)
+++|.+|.+.+...+
T Consensus 157 ~~~f~~ia~~l~~~p 171 (215)
T PTZ00132 157 EKPFLWLARRLTNDP 171 (215)
T ss_pred HHHHHHHHHHHhhcc
Confidence 999999998876543
|
|
| >KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=152.01 Aligned_cols=180 Identities=66% Similarity=1.040 Sum_probs=164.3
Q ss_pred ChhhHHHHhhhhcCC-CccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchh
Q 030120 1 MGIMFSRMFSSLFGN-KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWR 79 (182)
Q Consensus 1 ~~~~~~~~~~~~~~~-~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 79 (182)
|+.-++.+++...++ ...+++++|--|+|||++.-++.-++.....||++++.+.+.+++.++++||..|+..++..|+
T Consensus 1 m~~g~~s~f~~L~g~e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWR 80 (182)
T KOG0072|consen 1 MGGGFSSLFKALQGPEREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWR 80 (182)
T ss_pred CCchHHHHHHHhcCCccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHH
Confidence 556677888888766 8999999999999999999999888888899999999999999999999999999999999999
Q ss_pred hhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEec
Q 030120 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTC 159 (182)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
.|+.+.|.+|||+|.++.+........+..++.+....+..++++.||.|........++...++....+...+.++.+|
T Consensus 81 cYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tS 160 (182)
T KOG0072|consen 81 CYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTS 160 (182)
T ss_pred HHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeec
Confidence 99999999999999999999988888888888887777889999999999977667788888888877788889999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcC
Q 030120 160 AIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 160 a~~~~~v~~l~~~i~~~~~~~ 180 (182)
|.+|+|++..++|+.+.+.+.
T Consensus 161 A~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 161 AVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred cccccCCcHHHHHHHHHHhcc
Confidence 999999999999999988654
|
|
| >KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.4e-29 Score=157.77 Aligned_cols=180 Identities=37% Similarity=0.680 Sum_probs=157.7
Q ss_pred ChhhHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCC--------cccccccccceeeEEEECCEEEEEEECCCCC
Q 030120 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGE--------VVSTIPTIGFNVETVQYNNIKFQVWDLGGQT 72 (182)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~--------~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 72 (182)
|=++++.+++..+....+.++|+|..++|||||+.+.-... .....||.+.+...+.+.+.++.+||..|++
T Consensus 1 m~tl~~gl~~~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe 80 (197)
T KOG0076|consen 1 MFTLMSGLYKYMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQE 80 (197)
T ss_pred ChhHHHHHHHHHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChH
Confidence 55788899999999999999999999999999999884322 1226778899999999999999999999999
Q ss_pred CCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCc-ccccCC
Q 030120 73 SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALEL-HKIKNR 151 (182)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~-~~~~~~ 151 (182)
..+++|..|+..+|++||++|++++++++.....+.++...-...+.|+++.+||-|+.+.....++...+.. .....+
T Consensus 81 ~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~r 160 (197)
T KOG0076|consen 81 SLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRR 160 (197)
T ss_pred HHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCc
Confidence 9999999999999999999999999999999999999988877789999999999999877677777766653 223446
Q ss_pred ceEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030120 152 QWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 152 ~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
.+++.++||.+|+||++-..|+...++.+
T Consensus 161 d~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 161 DNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred cCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 67899999999999999999999998866
|
|
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=160.58 Aligned_cols=161 Identities=15% Similarity=0.225 Sum_probs=115.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+.|++++|++|+|||||++++..+.+.+ ..+|..... ..+...+ ..+.+||++|++.+.......+..+|++++++
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 3589999999999999999998777655 444443322 2333333 56789999999888777777889999999999
Q ss_pred eCCCcccHHHHHH-HHHHHHhccccCCCeEEEEEeCCCCCCCCCH-------HHHHHHhCcccccCCc-eEEEEecCCCC
Q 030120 93 DSSDTDRIQTAKE-EFHAILEEEELKGAVALIFANKQDLPGALDD-------AAVSEALELHKIKNRQ-WAIFKTCAIKG 163 (182)
Q Consensus 93 d~~~~~s~~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 163 (182)
|+++.+++..... |+..+... .++.|+++|+||+|+.+.... ..+.........+..+ ++++++||++|
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 158 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRY--CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG 158 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence 9999999988874 55555432 246999999999998542110 0000001111112223 47999999999
Q ss_pred CCHHHHHHHHHHHHhc
Q 030120 164 EGLFEGMDWLSNTLKS 179 (182)
Q Consensus 164 ~~v~~l~~~i~~~~~~ 179 (182)
.|++++|+.+.+.+..
T Consensus 159 ~~v~~~f~~l~~~~~~ 174 (187)
T cd04129 159 EGVDDVFEAATRAALL 174 (187)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999987653
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-29 Score=158.42 Aligned_cols=160 Identities=22% Similarity=0.361 Sum_probs=131.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc--eeeEEEE-----------CCEEEEEEECCCCCCCccchhhh
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQY-----------NNIKFQVWDLGGQTSIRPYWRCY 81 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~-----------~~~~~~~~D~~g~~~~~~~~~~~ 81 (182)
.-++.+.+|++|+||||++.++..+.|.. -.+|.++ ..+++.+ ....+++|||+|+++++.+.-.+
T Consensus 8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAF 87 (219)
T KOG0081|consen 8 YLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAF 87 (219)
T ss_pred HHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHH
Confidence 34678899999999999999999888877 5556654 4444444 23577899999999999999999
Q ss_pred cCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCC
Q 030120 82 FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
++.+-+++++||+++..||-..+.|+.++-....-.+..+++++||+|+.+. ..+.+......+...+.|||++||-
T Consensus 88 fRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~---R~Vs~~qa~~La~kyglPYfETSA~ 164 (219)
T KOG0081|consen 88 FRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQ---RVVSEDQAAALADKYGLPYFETSAC 164 (219)
T ss_pred HHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhh---hhhhHHHHHHHHHHhCCCeeeeccc
Confidence 9999999999999999999999999988866666677889999999999654 4444444445556678899999999
Q ss_pred CCCCHHHHHHHHHHHHh
Q 030120 162 KGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 162 ~~~~v~~l~~~i~~~~~ 178 (182)
+|.|+++..+.+.+.+.
T Consensus 165 tg~Nv~kave~LldlvM 181 (219)
T KOG0081|consen 165 TGTNVEKAVELLLDLVM 181 (219)
T ss_pred cCcCHHHHHHHHHHHHH
Confidence 99999988888777654
|
|
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=154.42 Aligned_cols=152 Identities=20% Similarity=0.224 Sum_probs=105.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECCEEEEEEECCCCCCCcc---------chhhhcCCCC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP---------YWRCYFPNTE 86 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~---------~~~~~~~~~d 86 (182)
+|+++|++|+|||||++++.+..+.. ..+|.+.....+.+.+.++.+|||||+..... ........+|
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d 81 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRA 81 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccC
Confidence 78999999999999999999987643 22344555556666778999999999742110 0111112368
Q ss_pred eEEEEEeCCCcccH--HHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCC
Q 030120 87 AVIYVVDSSDTDRI--QTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 87 ~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
++++|+|+++..++ .....|+..+.... .+.|+++|+||+|+.+.....+... ......++++++||++|.
T Consensus 82 ~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~ 154 (168)
T cd01897 82 AVLFLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNKIDLLTFEDLSEIEE-----EEELEGEEVLKISTLTEE 154 (168)
T ss_pred cEEEEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEccccCchhhHHHHHH-----hhhhccCceEEEEecccC
Confidence 99999999987543 44445555553321 3789999999999965422222111 112345679999999999
Q ss_pred CHHHHHHHHHHHH
Q 030120 165 GLFEGMDWLSNTL 177 (182)
Q Consensus 165 ~v~~l~~~i~~~~ 177 (182)
|++++++++.+.+
T Consensus 155 gi~~l~~~l~~~~ 167 (168)
T cd01897 155 GVDEVKNKACELL 167 (168)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998875
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.8e-27 Score=154.81 Aligned_cols=156 Identities=24% Similarity=0.225 Sum_probs=109.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECCE-EEEEEECCCCCC----Cccchh---hhcCCCCe
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNI-KFQVWDLGGQTS----IRPYWR---CYFPNTEA 87 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~-~~~~~D~~g~~~----~~~~~~---~~~~~~d~ 87 (182)
+|+++|.+|+|||||++++.+..... ..+|.......+.+.+. .+.+|||||+.. ...... ..+..+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 68999999999999999998765421 22344445555556665 999999999642 112222 23456999
Q ss_pred EEEEEeCCCc-ccHHHHHHHHHHHHhcc-ccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCC
Q 030120 88 VIYVVDSSDT-DRIQTAKEEFHAILEEE-ELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 88 ii~v~d~~~~-~s~~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
+++|+|++++ .++.....|...+.... ...+.|+++|+||+|+.+.....+...... ......+++++||+++.|
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~---~~~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELL---KELWGKPVFPISALTGEG 158 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHH---hhCCCCCEEEEecCCCCC
Confidence 9999999998 77877777766664432 124689999999999965433322221111 111346799999999999
Q ss_pred HHHHHHHHHHHH
Q 030120 166 LFEGMDWLSNTL 177 (182)
Q Consensus 166 v~~l~~~i~~~~ 177 (182)
++++++++.+.+
T Consensus 159 i~~l~~~i~~~~ 170 (170)
T cd01898 159 LDELLRKLAELL 170 (170)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=156.65 Aligned_cols=146 Identities=17% Similarity=0.267 Sum_probs=109.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEE-------CCEEEEEEECCCCCCCccchhhhcCCCCe
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQY-------NNIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~-------~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
+||+++|++++|||||++++.++.+.. ..+|++... ..+.+ ....+.+|||+|++.+...+..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999998876 667776433 33443 23678999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhcc------------------ccCCCeEEEEEeCCCCCCCC-CHHHHHHHhCcccc
Q 030120 88 VIYVVDSSDTDRIQTAKEEFHAILEEE------------------ELKGAVALIFANKQDLPGAL-DDAAVSEALELHKI 148 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~------------------~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~ 148 (182)
+|+|||++++.|++.+..|+.++.... ...+.|+++|+||+|+.+.. ...+....-....+
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999998886531 12468999999999996432 11111111111223
Q ss_pred cCCceEEEEecCCCC
Q 030120 149 KNRQWAIFKTCAIKG 163 (182)
Q Consensus 149 ~~~~~~~~~~Sa~~~ 163 (182)
...+.+.++.+|++.
T Consensus 161 ~~~~~~~i~~~c~~~ 175 (202)
T cd04102 161 EQGNAEEINLNCTNG 175 (202)
T ss_pred HhcCCceEEEecCCc
Confidence 445566777787764
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >KOG0395 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.1e-27 Score=157.31 Aligned_cols=161 Identities=21% Similarity=0.241 Sum_probs=134.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc-eeeEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF-NVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
...|++++|.+|+|||+|..++.+..|.. +.||++. ....+.. ....+.++||+|++.+..+...++...|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 46799999999999999999999999988 7888873 3333444 456778999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 171 (182)
|++++..||+....++..+.+.......|+++|+||+|+... ..+........+....++++++||+.+.+++++|.
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~---R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~ 158 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERE---RQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFY 158 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhc---cccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHH
Confidence 999999999999999999977666667899999999999653 23333333333566778899999999999999999
Q ss_pred HHHHHHhc
Q 030120 172 WLSNTLKS 179 (182)
Q Consensus 172 ~i~~~~~~ 179 (182)
.+...+..
T Consensus 159 ~L~r~~~~ 166 (196)
T KOG0395|consen 159 ELVREIRL 166 (196)
T ss_pred HHHHHHHh
Confidence 99986653
|
|
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=166.30 Aligned_cols=160 Identities=21% Similarity=0.244 Sum_probs=116.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEE-CCEEEEEEECCCCCC-------CccchhhhcCCCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQY-NNIKFQVWDLGGQTS-------IRPYWRCYFPNTE 86 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~-------~~~~~~~~~~~~d 86 (182)
..|+++|.||||||||++++.+..... ..+|..++...+.+ ...++.+||+||... +...+...+++++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~ 238 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 238 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence 479999999999999999998765332 33466677777777 567899999999632 2223444567899
Q ss_pred eEEEEEeCCCcccHHHHHHHHHHHHhcc-ccCCCeEEEEEeCCCCCCCCCHH-HHHHHhCcccccCCceEEEEecCCCCC
Q 030120 87 AVIYVVDSSDTDRIQTAKEEFHAILEEE-ELKGAVALIFANKQDLPGALDDA-AVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
++++|+|+++.++++....|..++.... ...++|+++|+||+|+.+..... +..... ....+++++++||++++
T Consensus 239 vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~----~~~~~~~i~~iSAktg~ 314 (335)
T PRK12299 239 LLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALE----LAALGGPVFLISAVTGE 314 (335)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHH----HHhcCCCEEEEEcCCCC
Confidence 9999999998877888877777664432 12468999999999996542211 111111 12234679999999999
Q ss_pred CHHHHHHHHHHHHhcCC
Q 030120 165 GLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 165 ~v~~l~~~i~~~~~~~~ 181 (182)
|+++++++|.+.+.+.+
T Consensus 315 GI~eL~~~L~~~l~~~~ 331 (335)
T PRK12299 315 GLDELLRALWELLEEAR 331 (335)
T ss_pred CHHHHHHHHHHHHHhhh
Confidence 99999999999887543
|
|
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=153.03 Aligned_cols=153 Identities=22% Similarity=0.168 Sum_probs=102.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC---ccc-c--cccccceeeEEEEC-CEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 19 RILVLGLDNAGKTTILYRLQMGE---VVS-T--IPTIGFNVETVQYN-NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~---~~~-~--~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
.|+++|++|+|||||+++|.+.. +.. . ..|.+.....+.+. +..+.+|||||++.+......++..+|++++|
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V 81 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLV 81 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEE
Confidence 58999999999999999998643 221 1 22444444455555 77999999999988877677778899999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCccccc--CCceEEEEecCCCCCCHHHH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIK--NRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~~l 169 (182)
+|+++... ......+. .+... ...|+++++||+|+.+................. ....+++++||+++.|++++
T Consensus 82 ~d~~~~~~-~~~~~~~~-~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 157 (164)
T cd04171 82 VAADEGIM-PQTREHLE-ILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEEL 157 (164)
T ss_pred EECCCCcc-HhHHHHHH-HHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHH
Confidence 99987421 12222222 12221 124899999999996532111111111111111 13568999999999999999
Q ss_pred HHHHHH
Q 030120 170 MDWLSN 175 (182)
Q Consensus 170 ~~~i~~ 175 (182)
++.+.+
T Consensus 158 ~~~l~~ 163 (164)
T cd04171 158 KEYLDE 163 (164)
T ss_pred HHHHhh
Confidence 998764
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-26 Score=165.89 Aligned_cols=158 Identities=15% Similarity=0.229 Sum_probs=111.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc----ccccccceeeEEEECCEEEEEEECCCCCCC-ccc-------hhhhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSI-RPY-------WRCYF 82 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~-~~~-------~~~~~ 82 (182)
++..+|+++|.+|+|||||+|+|.+..+.. ..+|.......+..++.++.+|||||.... ... ....+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 566799999999999999999999988753 222334445556678889999999997532 221 12346
Q ss_pred CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCC
Q 030120 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
..+|++++|+|..+. +.....++...+.. .+.|.++|+||+|+.+. ...+..+.... ......++++||++
T Consensus 130 ~~aDvil~VvD~~~s--~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~---~~~~~~i~~iSAkt 200 (339)
T PRK15494 130 HSADLVLLIIDSLKS--FDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTE---NHPDSLLFPISALS 200 (339)
T ss_pred hhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHh---cCCCcEEEEEeccC
Confidence 899999999998764 44444344333332 24577889999998643 22233333221 12335799999999
Q ss_pred CCCHHHHHHHHHHHHhcCC
Q 030120 163 GEGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~~~~~ 181 (182)
|.|+++++++|.+.+++++
T Consensus 201 g~gv~eL~~~L~~~l~~~~ 219 (339)
T PRK15494 201 GKNIDGLLEYITSKAKISP 219 (339)
T ss_pred ccCHHHHHHHHHHhCCCCC
Confidence 9999999999999888754
|
|
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-26 Score=154.61 Aligned_cols=154 Identities=18% Similarity=0.183 Sum_probs=107.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC-------ccc-cccc------cc--cee--eEEEE-----CCEEEEEEECCCCCCCc
Q 030120 19 RILVLGLDNAGKTTILYRLQMGE-------VVS-TIPT------IG--FNV--ETVQY-----NNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~-------~~~-~~~t------~~--~~~--~~~~~-----~~~~~~~~D~~g~~~~~ 75 (182)
+|+++|++++|||||+++|++.. +.. ..++ .+ ... ..+.+ ....+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998742 111 1111 11 111 11222 45778899999999999
Q ss_pred cchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEE
Q 030120 76 PYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAI 155 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (182)
..+..+++.+|++++|+|++++.+......|.. ... .+.|+++|+||+|+.+.. ..+....+.... ......+
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~-~~~----~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~-~~~~~~~ 154 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYL-ALE----NNLEIIPVINKIDLPSAD-PERVKQQIEDVL-GLDPSEA 154 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHH-HHH----cCCCEEEEEECCCCCcCC-HHHHHHHHHHHh-CCCcccE
Confidence 999999999999999999998766555544432 221 468999999999986432 222222221111 1122358
Q ss_pred EEecCCCCCCHHHHHHHHHHHHhc
Q 030120 156 FKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 156 ~~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
+++||++|.|+++++++|.+.++.
T Consensus 155 ~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (179)
T cd01890 155 ILVSAKTGLGVEDLLEAIVERIPP 178 (179)
T ss_pred EEeeccCCCCHHHHHHHHHhhCCC
Confidence 999999999999999999988754
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.3e-27 Score=143.71 Aligned_cols=161 Identities=17% Similarity=0.260 Sum_probs=130.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc--eeeEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...+|-.|+|+-|+|||+|+..+..++|.. ...|++. ....+++ ...++++|||+|+++++....++++.+.+.+
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal 88 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 88 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence 456899999999999999999999999877 4445553 3344555 5678899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
+|+|++...+.+.+..|+.+.. ...+++..+++++||.|+... ..+..++...++...+..++++||++|.|+++.
T Consensus 89 mvyditrrstynhlsswl~dar-~ltnpnt~i~lignkadle~q---rdv~yeeak~faeengl~fle~saktg~nveda 164 (215)
T KOG0097|consen 89 MVYDITRRSTYNHLSSWLTDAR-NLTNPNTVIFLIGNKADLESQ---RDVTYEEAKEFAEENGLMFLEASAKTGQNVEDA 164 (215)
T ss_pred EEEEehhhhhhhhHHHHHhhhh-ccCCCceEEEEecchhhhhhc---ccCcHHHHHHHHhhcCeEEEEecccccCcHHHH
Confidence 9999999999999999998874 455578899999999999654 233334444445567778999999999999999
Q ss_pred HHHHHHHHhc
Q 030120 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~i~~~~~~ 179 (182)
|-...+.+.+
T Consensus 165 fle~akkiyq 174 (215)
T KOG0097|consen 165 FLETAKKIYQ 174 (215)
T ss_pred HHHHHHHHHH
Confidence 8777766553
|
|
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.6e-26 Score=160.59 Aligned_cols=154 Identities=18% Similarity=0.119 Sum_probs=105.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc--ccc-ccc-ceeeEEEECCEEEEEEECCCCCCCcc--------chhhhcCCCC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS--TIP-TIG-FNVETVQYNNIKFQVWDLGGQTSIRP--------YWRCYFPNTE 86 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~--~~~-t~~-~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~d 86 (182)
+|+++|.+|+|||||+|+|.+.++.. ..+ |+. .........+.++.+|||||...... ....++..+|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 68999999999999999999988653 222 222 22222333567899999999754321 1345678999
Q ss_pred eEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030120 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
++++|+|+++..+.. ..+...+.. .+.|+++|+||+|+.+. .................+++++||++|.|+
T Consensus 82 vvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~---~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi 152 (270)
T TIGR00436 82 LILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFK---DKLLPLIDKYAILEDFKDIVPISALTGDNT 152 (270)
T ss_pred EEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCH---HHHHHHHHHHHhhcCCCceEEEecCCCCCH
Confidence 999999999876543 233333332 46899999999998632 222222111111112236999999999999
Q ss_pred HHHHHHHHHHHhcCC
Q 030120 167 FEGMDWLSNTLKSGG 181 (182)
Q Consensus 167 ~~l~~~i~~~~~~~~ 181 (182)
+++++++.+.+++++
T Consensus 153 ~~L~~~l~~~l~~~~ 167 (270)
T TIGR00436 153 SFLAAFIEVHLPEGP 167 (270)
T ss_pred HHHHHHHHHhCCCCC
Confidence 999999999887654
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-26 Score=155.86 Aligned_cols=154 Identities=20% Similarity=0.199 Sum_probs=109.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECCE-EEEEEECCCCCCCccc--------hhhhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNI-KFQVWDLGGQTSIRPY--------WRCYF 82 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~-~~~~~D~~g~~~~~~~--------~~~~~ 82 (182)
+..++|+++|++|+|||||++++.+..+.. ..+|.......+.+.+. .+.+|||||....... ....+
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 118 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEV 118 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHHH
Confidence 556899999999999999999999886432 33455555555655444 8999999997432110 11235
Q ss_pred CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCC
Q 030120 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
..+|++++|+|++++.+......|...+ ......+.|+++|+||+|+.+..... . .......+++++||++
T Consensus 119 ~~~d~ii~v~D~~~~~~~~~~~~~~~~l-~~~~~~~~~viiV~NK~Dl~~~~~~~---~-----~~~~~~~~~~~~Sa~~ 189 (204)
T cd01878 119 AEADLLLHVVDASDPDYEEQIETVEKVL-KELGAEDIPMILVLNKIDLLDDEELE---E-----RLEAGRPDAVFISAKT 189 (204)
T ss_pred hcCCeEEEEEECCCCChhhHHHHHHHHH-HHcCcCCCCEEEEEEccccCChHHHH---H-----HhhcCCCceEEEEcCC
Confidence 6899999999999987776655444333 33333568999999999996542211 1 1123455799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 030120 163 GEGLFEGMDWLSNTL 177 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~ 177 (182)
+.|+++++++|.+.+
T Consensus 190 ~~gi~~l~~~L~~~~ 204 (204)
T cd01878 190 GEGLDELLEAIEELL 204 (204)
T ss_pred CCCHHHHHHHHHhhC
Confidence 999999999998754
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=151.24 Aligned_cols=156 Identities=22% Similarity=0.215 Sum_probs=113.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccccc-------------------ccccceeeEEEECCEEEEEEECCCCCCCccchh
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVSTI-------------------PTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWR 79 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~~~-------------------~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 79 (182)
+|+++|.+|+|||||+|++.+....... .+.......+......+.+|||||+..+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 4899999999999999999887655421 122233444555788999999999998888888
Q ss_pred hhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHH----HHHHhCcccc-------
Q 030120 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAA----VSEALELHKI------- 148 (182)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~----~~~~~~~~~~------- 148 (182)
.+++.+|++++|+|+.++.+.. ...++... .. .+.|+++++||+|+........ +.+.+.....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~-~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQ-TREHLRIA-RE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG 155 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHH-HHHHHHHH-HH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence 8899999999999998875432 22233222 22 4789999999999975333222 2222222111
Q ss_pred --cCCceEEEEecCCCCCCHHHHHHHHHHHHhc
Q 030120 149 --KNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 149 --~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
.....+++++||++|.|++++++++.+.+++
T Consensus 156 ~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~~ 188 (189)
T cd00881 156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHLPP 188 (189)
T ss_pred cccCCcceEEEEecccCcCHHHHHHHHHhhCCC
Confidence 2346789999999999999999999998864
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-28 Score=148.79 Aligned_cols=155 Identities=22% Similarity=0.361 Sum_probs=123.5
Q ss_pred EEEcCCCCCHHHHHHHHhcCCccc--ccccccceee--EEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeC
Q 030120 21 LVLGLDNAGKTTILYRLQMGEVVS--TIPTIGFNVE--TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 21 ~i~G~~~~GKssl~~~l~~~~~~~--~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
+++|++++|||+|+-++..+.|.. ..+|.+++.. .++. ..+++++|||+||+++++....|++.+|+.++++|+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 368999999999998887777665 5566665543 3444 568899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHH
Q 030120 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 174 (182)
.+..||+....|+.++... ....+.+++++||+|+..+ ..+.....+..+...++|++++||++|.|++..|-.|.
T Consensus 81 ankasfdn~~~wlsei~ey-~k~~v~l~llgnk~d~a~e---r~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia 156 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEY-AKEAVALMLLGNKCDLAHE---RAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIA 156 (192)
T ss_pred ccchhHHHHHHHHHHHHHH-HHhhHhHhhhccccccchh---hccccchHHHHHHHHCCCceeccccccccHhHHHHHHH
Confidence 9999999999999988654 3356889999999999542 12222222333345567899999999999999999998
Q ss_pred HHHhc
Q 030120 175 NTLKS 179 (182)
Q Consensus 175 ~~~~~ 179 (182)
+.+.+
T Consensus 157 ~~l~k 161 (192)
T KOG0083|consen 157 EELKK 161 (192)
T ss_pred HHHHH
Confidence 87764
|
|
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-25 Score=147.75 Aligned_cols=154 Identities=21% Similarity=0.135 Sum_probs=108.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccc---cccccceeeEEEEC---CEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVST---IPTIGFNVETVQYN---NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~~---~~t~~~~~~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.|+++|.+|+|||||+++|.+..+... ..|.......+... +..+.+|||||++.+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 489999999999999999998876552 22333333444443 678999999999988888888889999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCccc-----ccCCceEEEEecCCCCCCHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHK-----IKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~ 167 (182)
|+++..... ....+..+ .. .+.|+++|+||+|+.+.. ...+...+.... .....++++++||++|.|++
T Consensus 82 d~~~~~~~~-~~~~~~~~-~~---~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (168)
T cd01887 82 AADDGVMPQ-TIEAIKLA-KA---ANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGID 155 (168)
T ss_pred ECCCCccHH-HHHHHHHH-HH---cCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeecccCCCHH
Confidence 998864222 11122222 22 468999999999986432 222222221110 11235689999999999999
Q ss_pred HHHHHHHHHHh
Q 030120 168 EGMDWLSNTLK 178 (182)
Q Consensus 168 ~l~~~i~~~~~ 178 (182)
+++++|.+...
T Consensus 156 ~l~~~l~~~~~ 166 (168)
T cd01887 156 DLLEAILLLAE 166 (168)
T ss_pred HHHHHHHHhhh
Confidence 99999987643
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-25 Score=167.90 Aligned_cols=159 Identities=16% Similarity=0.182 Sum_probs=112.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc--cccc--cccceeeEEEECCEEEEEEECCCCCCC----------ccc-hhh
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVV--STIP--TIGFNVETVQYNNIKFQVWDLGGQTSI----------RPY-WRC 80 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~----------~~~-~~~ 80 (182)
..++|+++|.+|+|||||+|+|++.... ...+ |.+.....+.+.+..+.+|||||.... ... ...
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 4689999999999999999999998753 2333 333445566678889999999995321 111 123
Q ss_pred hcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecC
Q 030120 81 YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
+++.+|++++|+|++++.+..... ++..+.. .+.|+++|+||+|+.+......+...+..........+++++||
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SA 364 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISA 364 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEEC
Confidence 568999999999999987766553 3333322 47899999999999653222222222222222233467999999
Q ss_pred CCCCCHHHHHHHHHHHHhc
Q 030120 161 IKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 161 ~~~~~v~~l~~~i~~~~~~ 179 (182)
++|.|++++|+.+.+.+..
T Consensus 365 k~g~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 365 KTGRAVDKLVPALETALES 383 (472)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999987654
|
|
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.94 E-value=6e-25 Score=144.17 Aligned_cols=153 Identities=24% Similarity=0.299 Sum_probs=114.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeE--EEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET--VQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
.+||+++|.+|+|||||++++.+..+.. ..++++..... +...+ ..+.+||+||+..+...+..+.+.++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 3799999999999999999999988544 44555544433 55566 7889999999999988888888999999999
Q ss_pred EeCCCc-ccHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 92 VDSSDT-DRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
+|.... .++.... .+...+..... .+.|+++++||+|+.............. .....+++++||+++.|++++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~~~~~~~~~~sa~~~~gv~~~ 155 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFA----KLNGEPIIPLSAETGKNIDSA 155 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHh----hccCCceEEeecCCCCCHHHH
Confidence 999876 5555554 44444444332 2789999999999976432333333332 223446999999999999999
Q ss_pred HHHHH
Q 030120 170 MDWLS 174 (182)
Q Consensus 170 ~~~i~ 174 (182)
+++|.
T Consensus 156 ~~~l~ 160 (161)
T TIGR00231 156 FKIVE 160 (161)
T ss_pred HHHhh
Confidence 98863
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-25 Score=138.33 Aligned_cols=165 Identities=43% Similarity=0.762 Sum_probs=147.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECC-EEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN-IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+++.++++++|-.++|||||+..|.+.......||.+++...+.+.+ .++.+||.+|+...+..|..|+.+.|++|||+
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVI 93 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVI 93 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEE
Confidence 37899999999999999999999999999889999999999999965 99999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 172 (182)
|.++...++...+.+.+++.......+|+.+..||-|+.-....+++..-+........-+++-++||++++|+..-.++
T Consensus 94 DS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~w 173 (185)
T KOG0074|consen 94 DSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDW 173 (185)
T ss_pred eCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcchh
Confidence 99999889988888888888877788999999999999766666666666666666677889999999999999988888
Q ss_pred HHHHHh
Q 030120 173 LSNTLK 178 (182)
Q Consensus 173 i~~~~~ 178 (182)
+.....
T Consensus 174 v~sn~~ 179 (185)
T KOG0074|consen 174 VQSNPE 179 (185)
T ss_pred hhcCCC
Confidence 876544
|
|
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-26 Score=155.46 Aligned_cols=162 Identities=23% Similarity=0.235 Sum_probs=102.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEECCEEEEEEECCCC-----------CCCccchhhh
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGGQ-----------TSIRPYWRCY 81 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~-----------~~~~~~~~~~ 81 (182)
+...++|+++|++|+|||||+|++.+..+.. ..++++.....+.+. ++.+|||||. +.+...+..+
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRY 83 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHH
Confidence 3567899999999999999999999887654 444444444444333 7899999994 3344444444
Q ss_pred c----CCCCeEEEEEeCCCcccHHH---------HHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcc
Q 030120 82 F----PNTEAVIYVVDSSDTDRIQT---------AKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELH 146 (182)
Q Consensus 82 ~----~~~d~ii~v~d~~~~~s~~~---------~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~ 146 (182)
+ ..++++++|+|..+...... ....+...+. ..+.|+++|+||+|+.+.. ...++...+...
T Consensus 84 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~ 160 (201)
T PRK04213 84 IEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNRDEVLDEIAERLGLY 160 (201)
T ss_pred HHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcHHHHHHHHHHHhcCC
Confidence 3 34678899999865321100 0111122222 2478999999999986432 112222222210
Q ss_pred -cccCCceEEEEecCCCCCCHHHHHHHHHHHHhcCC
Q 030120 147 -KIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 147 -~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~~ 181 (182)
.......+++++||++| |+++++++|.+.+.+..
T Consensus 161 ~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~ 195 (201)
T PRK04213 161 PPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAK 195 (201)
T ss_pred ccccccCCcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence 00011236899999999 99999999999887654
|
|
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.4e-25 Score=159.21 Aligned_cols=156 Identities=24% Similarity=0.256 Sum_probs=112.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECC-EEEEEEECCCCCCC-------ccchhhhcCCCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNN-IKFQVWDLGGQTSI-------RPYWRCYFPNTE 86 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~-------~~~~~~~~~~~d 86 (182)
..|+++|.||+|||||++++.+..... ..+|..++...+.+.+ .++.+||+||.... ...+...+++++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad 237 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 237 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence 589999999999999999999865322 2345667777777766 89999999996422 222334456799
Q ss_pred eEEEEEeCCCc---ccHHHHHHHHHHHHhcc-ccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCC
Q 030120 87 AVIYVVDSSDT---DRIQTAKEEFHAILEEE-ELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 87 ~ii~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
++++|+|+++. ++++....|..++.... ...+.|+++|+||+|+.+....+++.+.+. ...+.+++++||++
T Consensus 238 ~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~----~~~~~~vi~iSAkt 313 (329)
T TIGR02729 238 VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELK----KALGKPVFPISALT 313 (329)
T ss_pred EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHH----HHcCCcEEEEEccC
Confidence 99999999976 55666666665554321 224689999999999965432223322222 12235799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 030120 163 GEGLFEGMDWLSNTL 177 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~ 177 (182)
++|+++++++|.+.+
T Consensus 314 g~GI~eL~~~I~~~l 328 (329)
T TIGR02729 314 GEGLDELLYALAELL 328 (329)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998865
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-25 Score=154.49 Aligned_cols=159 Identities=18% Similarity=0.187 Sum_probs=114.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc--cccccc--ceeeEEEECCEEEEEEECCCCCCCcc--------chhhhcC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIG--FNVETVQYNNIKFQVWDLGGQTSIRP--------YWRCYFP 83 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t~~--~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~ 83 (182)
+.-.|+|+|.||+|||||+|++.|.+.+- ..+.++ .....+..++.++.++||||...-.. .....+.
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~ 84 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALK 84 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence 34459999999999999999999999765 334333 33344455789999999999544322 2355678
Q ss_pred CCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCC
Q 030120 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
.+|+++||+|+.++.. .-.++....++. .+.|+++++||+|...+... +...............++++||++|
T Consensus 85 dvDlilfvvd~~~~~~--~~d~~il~~lk~---~~~pvil~iNKID~~~~~~~--l~~~~~~~~~~~~f~~ivpiSA~~g 157 (298)
T COG1159 85 DVDLILFVVDADEGWG--PGDEFILEQLKK---TKTPVILVVNKIDKVKPKTV--LLKLIAFLKKLLPFKEIVPISALKG 157 (298)
T ss_pred cCcEEEEEEeccccCC--ccHHHHHHHHhh---cCCCeEEEEEccccCCcHHH--HHHHHHHHHhhCCcceEEEeecccc
Confidence 9999999999998643 233333333333 36799999999998765331 2223322333344558999999999
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 030120 164 EGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 164 ~~v~~l~~~i~~~~~~~~ 181 (182)
.|++.+.+.+.+.+++++
T Consensus 158 ~n~~~L~~~i~~~Lpeg~ 175 (298)
T COG1159 158 DNVDTLLEIIKEYLPEGP 175 (298)
T ss_pred CCHHHHHHHHHHhCCCCC
Confidence 999999999999998764
|
|
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.1e-25 Score=160.63 Aligned_cols=150 Identities=22% Similarity=0.230 Sum_probs=109.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEE-CCEEEEEEECCCCCC---------Cccchhhhc
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQY-NNIKFQVWDLGGQTS---------IRPYWRCYF 82 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~---------~~~~~~~~~ 82 (182)
..++|+++|.+|+|||||+|+|.+..... ..+|.++....+.+ ++.++.+|||||..+ +.. ....+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~-tle~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRA-TLEEV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHH-HHHHH
Confidence 45899999999999999999999987432 35566777777777 578999999999722 111 12246
Q ss_pred CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCC
Q 030120 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
.++|++++|+|++++.+......| ..++......+.|+++|+||+|+.+. .++..... ...+++++||++
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~-~~~L~~l~~~~~piIlV~NK~Dl~~~---~~v~~~~~------~~~~~i~iSAkt 336 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAV-EKVLEELGAEDIPQLLVYNKIDLLDE---PRIERLEE------GYPEAVFVSAKT 336 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHH-HHHHHHhccCCCCEEEEEEeecCCCh---HhHHHHHh------CCCCEEEEEccC
Confidence 789999999999998776555433 33444433357899999999999643 22221111 123589999999
Q ss_pred CCCHHHHHHHHHHH
Q 030120 163 GEGLFEGMDWLSNT 176 (182)
Q Consensus 163 ~~~v~~l~~~i~~~ 176 (182)
|.|++++++.|.+.
T Consensus 337 g~GI~eL~~~I~~~ 350 (351)
T TIGR03156 337 GEGLDLLLEAIAER 350 (351)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998764
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-26 Score=146.62 Aligned_cols=141 Identities=24% Similarity=0.283 Sum_probs=98.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccc--cccceeeEEEECCEEEEEEECCCCCCCcc------chhhhc--CCCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRP------YWRCYF--PNTE 86 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~~~d 86 (182)
++|+++|+||+|||||+|+|.+.+... ..| |.+.....+.+.+..+.++|+||...+.. ....++ .+.|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 589999999999999999999988443 444 55566667777899999999999544322 223333 6899
Q ss_pred eEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC----HHHHHHHhCcccccCCceEEEEecCCC
Q 030120 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD----DAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
++++|+|+++.+ .......++.. .++|+++++||+|+..... .+.+.+. .+++++++||++
T Consensus 81 ~ii~VvDa~~l~---r~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~--------Lg~pvi~~sa~~ 145 (156)
T PF02421_consen 81 LIIVVVDATNLE---RNLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSER--------LGVPVIPVSART 145 (156)
T ss_dssp EEEEEEEGGGHH---HHHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHH--------HTS-EEEEBTTT
T ss_pred EEEEECCCCCHH---HHHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHH--------hCCCEEEEEeCC
Confidence 999999998753 33333333433 3799999999999854322 2333333 356899999999
Q ss_pred CCCHHHHHHHH
Q 030120 163 GEGLFEGMDWL 173 (182)
Q Consensus 163 ~~~v~~l~~~i 173 (182)
++|++++++.|
T Consensus 146 ~~g~~~L~~~I 156 (156)
T PF02421_consen 146 GEGIDELKDAI 156 (156)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHhhC
Confidence 99999999875
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-24 Score=140.87 Aligned_cols=143 Identities=20% Similarity=0.173 Sum_probs=105.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc--ccc--cccceeeEEEECCEEEEEEECCCCCCCccc--------hhhhcCCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPY--------WRCYFPNT 85 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~~~~ 85 (182)
++|+++|++|+|||||++++.+..... ..+ +.......+...+.++.+|||||....... ....+.++
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 589999999999999999999887532 222 223344455567789999999997665432 23456789
Q ss_pred CeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCC
Q 030120 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
|++++|+|+.++.+......+.. ..+.|+++|+||+|+.+.... .......+++++||+++.|
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~----------~~~~~~~~~~~~Sa~~~~~ 144 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL----------LSLLAGKPIIAISAKTGEG 144 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc----------ccccCCCceEEEECCCCCC
Confidence 99999999998766555433222 257899999999999754322 1233456799999999999
Q ss_pred HHHHHHHHHHHH
Q 030120 166 LFEGMDWLSNTL 177 (182)
Q Consensus 166 v~~l~~~i~~~~ 177 (182)
+++++++|.+.+
T Consensus 145 v~~l~~~l~~~~ 156 (157)
T cd04164 145 LDELKEALLELA 156 (157)
T ss_pred HHHHHHHHHHhh
Confidence 999999998754
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.9e-25 Score=149.38 Aligned_cols=158 Identities=21% Similarity=0.126 Sum_probs=105.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC----c----cc--ccccccceeeEEEEC--------------CEEEEEEECCCCCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGE----V----VS--TIPTIGFNVETVQYN--------------NIKFQVWDLGGQTS 73 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~----~----~~--~~~t~~~~~~~~~~~--------------~~~~~~~D~~g~~~ 73 (182)
++|+++|++|+|||||+++|++.. + .+ ...|.+.....+.+. +..+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 589999999999999999998731 1 11 123444444444433 67999999999976
Q ss_pred CccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCc----cc--
Q 030120 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALEL----HK-- 147 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~----~~-- 147 (182)
+..........+|++++|+|+.++........+. +... .+.|+++++||+|+......+...+.... ..
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 155 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK 155 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 5444444556789999999998864433322221 1111 25799999999998643222222221111 11
Q ss_pred ccCCceEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030120 148 IKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
....+++++++||++|.|++++++++.+.++.+
T Consensus 156 ~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~ 188 (192)
T cd01889 156 TRFKNSPIIPVSAKPGGGEAELGKDLNNLIVLP 188 (192)
T ss_pred cCcCCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence 113457899999999999999999999987754
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.8e-25 Score=147.00 Aligned_cols=152 Identities=22% Similarity=0.200 Sum_probs=106.5
Q ss_pred EEcCCCCCHHHHHHHHhcCCc--cc-ccccccceeeEEEEC-CEEEEEEECCCCCC----Ccc---chhhhcCCCCeEEE
Q 030120 22 VLGLDNAGKTTILYRLQMGEV--VS-TIPTIGFNVETVQYN-NIKFQVWDLGGQTS----IRP---YWRCYFPNTEAVIY 90 (182)
Q Consensus 22 i~G~~~~GKssl~~~l~~~~~--~~-~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~----~~~---~~~~~~~~~d~ii~ 90 (182)
++|++|+|||||+|++.+... .. ..+|.......+.+. +.++.+|||||... ... .+...++.+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 579999999999999999874 22 233455566666677 89999999999632 111 22345678999999
Q ss_pred EEeCCCc------ccHHHHHHHHHHHHhccc------cCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEe
Q 030120 91 VVDSSDT------DRIQTAKEEFHAILEEEE------LKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 91 v~d~~~~------~s~~~~~~~~~~~~~~~~------~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
|+|+.+. .++.....|...+..... ..+.|+++|+||+|+.......... ..........+++++
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~ 157 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL---VRELALEEGAEVVPI 157 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH---HHHHhcCCCCCEEEE
Confidence 9999987 456666656555543321 1468999999999996543222221 111122345569999
Q ss_pred cCCCCCCHHHHHHHHHHH
Q 030120 159 CAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 159 Sa~~~~~v~~l~~~i~~~ 176 (182)
||+++.|++++++++.+.
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999998764
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-24 Score=162.58 Aligned_cols=147 Identities=22% Similarity=0.291 Sum_probs=110.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCc--ccccc--cccceeeEEEECCEEEEEEECCCCCCCccc--------hhhhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEV--VSTIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPY--------WRCYF 82 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~ 82 (182)
...++|+++|.+|+|||||+|++.+... ....+ |.+.....+...+.++.+|||||....... ...++
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 4568999999999999999999998764 23333 444556667778899999999998754332 23467
Q ss_pred CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCC
Q 030120 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
..+|++++|+|++++.+...... +.. ..+.|+++|+||+|+.+..... .....+++++||++
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~-l~~------~~~~piiiV~NK~DL~~~~~~~-----------~~~~~~~i~iSAkt 354 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEI-LEE------LKDKPVIVVLNKADLTGEIDLE-----------EENGKPVIRISAKT 354 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHH-HHh------cCCCCcEEEEEhhhccccchhh-----------hccCCceEEEEeeC
Confidence 88999999999998876654332 222 2468999999999996432211 12334689999999
Q ss_pred CCCHHHHHHHHHHHHhc
Q 030120 163 GEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~~~ 179 (182)
|.|+++++++|.+.+..
T Consensus 355 g~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 355 GEGIDELREAIKELAFG 371 (449)
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999987753
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=163.30 Aligned_cols=159 Identities=21% Similarity=0.184 Sum_probs=112.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc--ccc--cccceeeEEEECCEEEEEEECCCCCCCccc-----------hh
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPY-----------WR 79 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-----------~~ 79 (182)
...++++++|.+|+|||||+|++++..... ..+ |.+.....+...+..+.+|||||....... ..
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~ 249 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTL 249 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHH
Confidence 345899999999999999999999876432 222 333444555667789999999997654322 13
Q ss_pred hhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC-CCCHHHHHHHhCcccccCCceEEEEe
Q 030120 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG-ALDDAAVSEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
.+++.+|++++|+|+.++.+..... .+..... .+.|+++|+||+|+.+ .....++...+.........++++++
T Consensus 250 ~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~ 324 (429)
T TIGR03594 250 KAIERADVVLLVLDATEGITEQDLR-IAGLILE----AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFI 324 (429)
T ss_pred HHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEE
Confidence 4678999999999999886654432 2222222 4689999999999972 22223333333332223345789999
Q ss_pred cCCCCCCHHHHHHHHHHHHh
Q 030120 159 CAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 159 Sa~~~~~v~~l~~~i~~~~~ 178 (182)
||++|.|++++|+++.+.+.
T Consensus 325 SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 325 SALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999987654
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.7e-25 Score=149.69 Aligned_cols=162 Identities=13% Similarity=0.051 Sum_probs=105.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc---cc---ccccccceeeEEEEC---------------------------C----
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEV---VS---TIPTIGFNVETVQYN---------------------------N---- 60 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~---~~---~~~t~~~~~~~~~~~---------------------------~---- 60 (182)
++|+++|+.|+|||||+..+.+... .. ...+.......+.+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999975521 11 111111111111110 2
Q ss_pred --EEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHH
Q 030120 61 --IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAA 138 (182)
Q Consensus 61 --~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~ 138 (182)
..+.+|||||++.+...+...+..+|++++|+|+.++.........+..+ ... ...|+++|+||+|+.+......
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~-~~~--~~~~iiivvNK~Dl~~~~~~~~ 157 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL-EIM--GLKHIIIVQNKIDLVKEEQALE 157 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH-HHc--CCCcEEEEEEchhccCHHHHHH
Confidence 67899999999988887888888999999999998742112222222222 211 2357999999999964322212
Q ss_pred HHHHhCcccc--cCCceEEEEecCCCCCCHHHHHHHHHHHHhcCCC
Q 030120 139 VSEALELHKI--KNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSGGS 182 (182)
Q Consensus 139 ~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~~~ 182 (182)
..+.+..... ....++++++||++|.|+++++++|.+.+++++|
T Consensus 158 ~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~~~ 203 (203)
T cd01888 158 NYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTPPR 203 (203)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCCCC
Confidence 2222211111 1235679999999999999999999999998775
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-24 Score=141.75 Aligned_cols=145 Identities=23% Similarity=0.240 Sum_probs=102.4
Q ss_pred EEcCCCCCHHHHHHHHhcCCccc-ccc--cccceeeEEEECCEEEEEEECCCCCCCcc------chhhhcC--CCCeEEE
Q 030120 22 VLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRP------YWRCYFP--NTEAVIY 90 (182)
Q Consensus 22 i~G~~~~GKssl~~~l~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~~--~~d~ii~ 90 (182)
++|.+|+|||||++++.+..+.. ..+ |.......+.+.+..+.+|||||+..+.. .+..++. .+|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 57999999999999999876333 333 44455566777778999999999876654 2445554 8999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
|+|+.+.+. ...++..+.. .++|+++|+||+|+.+..........+ ....+.+++++||+++.|+++++
T Consensus 81 v~d~~~~~~---~~~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~----~~~~~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 81 VVDATNLER---NLYLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKL----SELLGVPVVPTSARKGEGIDELK 149 (158)
T ss_pred EeeCCcchh---HHHHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHH----HHhhCCCeEEEEccCCCCHHHHH
Confidence 999987643 2233333322 368999999999996543221111111 12234579999999999999999
Q ss_pred HHHHHHH
Q 030120 171 DWLSNTL 177 (182)
Q Consensus 171 ~~i~~~~ 177 (182)
+.+.+..
T Consensus 150 ~~l~~~~ 156 (158)
T cd01879 150 DAIAELA 156 (158)
T ss_pred HHHHHHh
Confidence 9998764
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-24 Score=145.93 Aligned_cols=157 Identities=19% Similarity=0.218 Sum_probs=105.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc--CCccccc-------------c----cccceeeEEEECCEEEEEEECCCCCCCccch
Q 030120 18 ARILVLGLDNAGKTTILYRLQM--GEVVSTI-------------P----TIGFNVETVQYNNIKFQVWDLGGQTSIRPYW 78 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~--~~~~~~~-------------~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 78 (182)
.+|+++|.+|+|||||+++|++ +.+.... . +.......+.+....+.+|||||++.+...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999986 3333211 1 1112233455678899999999999999999
Q ss_pred hhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH---HHHHHHhCcc--cccCCce
Q 030120 79 RCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD---AAVSEALELH--KIKNRQW 153 (182)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~---~~~~~~~~~~--~~~~~~~ 153 (182)
..+++.+|++++|+|+++.. ......++..... .+.|+++|+||+|+...... .++...+... .....++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDF 157 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCcc
Confidence 99999999999999998753 2233333333322 46899999999999653222 1222221111 1123367
Q ss_pred EEEEecCCCCCCH----------HHHHHHHHHHHhc
Q 030120 154 AIFKTCAIKGEGL----------FEGMDWLSNTLKS 179 (182)
Q Consensus 154 ~~~~~Sa~~~~~v----------~~l~~~i~~~~~~ 179 (182)
+++++||++|.|+ .+|++.|.+.++.
T Consensus 158 ~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~~~ 193 (194)
T cd01891 158 PVLYASAKNGWASLNLEDPSEDLEPLFDTIIEHVPA 193 (194)
T ss_pred CEEEeehhccccccccccchhhHHHHHHHHHhcCCC
Confidence 8999999999654 5666666665543
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=140.40 Aligned_cols=155 Identities=20% Similarity=0.175 Sum_probs=105.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc--ccccc--cceeeEEEECCEEEEEEECCCCCCCcc-----------chhhh
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS--TIPTI--GFNVETVQYNNIKFQVWDLGGQTSIRP-----------YWRCY 81 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t~--~~~~~~~~~~~~~~~~~D~~g~~~~~~-----------~~~~~ 81 (182)
.++|+++|.+|+|||||++++.+..... ..+++ ......+...+.++.+|||||...... .....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 5789999999999999999999876432 22222 233344556778899999999754311 11234
Q ss_pred cCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEec
Q 030120 82 FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTC 159 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
+..+|++++|+|+.++.+.... ..+... .. .+.|+++++||+|+.+.. ....+..............+++++|
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~-~~~~~~-~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDL-RIAGLI-LE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFIS 156 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHH-HHHHHH-Hh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEe
Confidence 5789999999999988664432 222222 21 368999999999997552 2233333333222222346799999
Q ss_pred CCCCCCHHHHHHHHHHH
Q 030120 160 AIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 160 a~~~~~v~~l~~~i~~~ 176 (182)
|+++.|++++++++.+.
T Consensus 157 a~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 157 ALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccCCCCHHHHHHHHHHh
Confidence 99999999999998764
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >KOG4252 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.8e-27 Score=149.45 Aligned_cols=160 Identities=16% Similarity=0.319 Sum_probs=131.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEE--EECCEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETV--QYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
+..+|++|+|+.++||||++.+++.+-|.. +..|++... ..+ ..+.++..+|||+|++++......|++.+.+.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 577899999999999999999999888877 666666432 223 236678889999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
+||+.++..||+....|..++..+. ..+|.++|-||+|+.++. .+...+.+..++...+.++.+|++...|+.++
T Consensus 98 LVFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds---~~~~~evE~lak~l~~RlyRtSvked~NV~~v 172 (246)
T KOG4252|consen 98 LVFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDS---QMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHV 172 (246)
T ss_pred EEEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhh---hcchHHHHHHHHHhhhhhhhhhhhhhhhhHHH
Confidence 9999999999999999999997765 489999999999997542 22222222333455667999999999999999
Q ss_pred HHHHHHHHhc
Q 030120 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~i~~~~~~ 179 (182)
|.++.+++.+
T Consensus 173 F~YLaeK~~q 182 (246)
T KOG4252|consen 173 FAYLAEKLTQ 182 (246)
T ss_pred HHHHHHHHHH
Confidence 9999987653
|
|
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-24 Score=140.79 Aligned_cols=150 Identities=29% Similarity=0.400 Sum_probs=113.5
Q ss_pred EEcCCCCCHHHHHHHHhcCCc-cc-ccccccceeeEEEEC----CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCC
Q 030120 22 VLGLDNAGKTTILYRLQMGEV-VS-TIPTIGFNVETVQYN----NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 22 i~G~~~~GKssl~~~l~~~~~-~~-~~~t~~~~~~~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (182)
++|++|+|||||++++.+... .. ..++. ......... ...+.+||+||+......+...++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 579999999999999999887 33 33444 555544443 678999999999888887788899999999999999
Q ss_pred CcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHH
Q 030120 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 174 (182)
++.+......++..........+.|+++++||+|+.......... ...........+++++|+.++.|+++++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEE--LAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHH--HHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 998887777764344444444689999999999997554333221 01111234567899999999999999999875
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.1e-25 Score=142.46 Aligned_cols=134 Identities=25% Similarity=0.281 Sum_probs=91.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCC-----CccchhhhcCCCCeEEEEEe
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTS-----IRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~-----~~~~~~~~~~~~d~ii~v~d 93 (182)
||+++|++|+|||||++++.+..+. ..+|.+ +.+.. .+|||||+.. +.... ..++++|++++|+|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~-----~~~~~---~~iDt~G~~~~~~~~~~~~~-~~~~~ad~vilv~d 71 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQA-----VEYND---GAIDTPGEYVENRRLYSALI-VTAADADVIALVQS 71 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-ccccee-----EEEcC---eeecCchhhhhhHHHHHHHH-HHhhcCCEEEEEec
Confidence 7999999999999999999987653 223332 22222 6899999731 22222 34789999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC-CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHH
Q 030120 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 172 (182)
++++.++.. ..|. ... ..|+++|+||+|+.+.. ..++..+.... ....+++++||++|.|++++|++
T Consensus 72 ~~~~~s~~~-~~~~-~~~------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~ 139 (142)
T TIGR02528 72 ATDPESRFP-PGFA-SIF------VKPVIGLVTKIDLAEADVDIERAKELLET----AGAEPIFEISSVDEQGLEALVDY 139 (142)
T ss_pred CCCCCcCCC-hhHH-Hhc------cCCeEEEEEeeccCCcccCHHHHHHHHHH----cCCCcEEEEecCCCCCHHHHHHH
Confidence 999987644 2232 221 24999999999986432 22222222211 11236899999999999999998
Q ss_pred HH
Q 030120 173 LS 174 (182)
Q Consensus 173 i~ 174 (182)
+.
T Consensus 140 l~ 141 (142)
T TIGR02528 140 LN 141 (142)
T ss_pred Hh
Confidence 74
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.3e-24 Score=161.61 Aligned_cols=153 Identities=20% Similarity=0.262 Sum_probs=107.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc--ccccc--cceeeEEEECCEEEEEEECCCCCC--------Cccchhhhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTI--GFNVETVQYNNIKFQVWDLGGQTS--------IRPYWRCYF 82 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t~--~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~ 82 (182)
....+|+|+|.+|+|||||+|++.+..... ..+++ +.....+.+.+..+.+|||||.+. +...+..++
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 345789999999999999999999876543 33332 234445566788899999999763 223345578
Q ss_pred CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCC
Q 030120 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
+.+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+..... +..+... ...+ .++++||++
T Consensus 116 ~~aD~il~VvD~~~~~s~~~--~~i~~~l~~---~~~piilV~NK~Dl~~~~~--~~~~~~~----~g~~-~~~~iSA~~ 183 (472)
T PRK03003 116 RTADAVLFVVDATVGATATD--EAVARVLRR---SGKPVILAANKVDDERGEA--DAAALWS----LGLG-EPHPVSALH 183 (472)
T ss_pred HhCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCccch--hhHHHHh----cCCC-CeEEEEcCC
Confidence 89999999999998865432 223333332 4789999999999864321 1111111 1111 247999999
Q ss_pred CCCHHHHHHHHHHHHhc
Q 030120 163 GEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~~~ 179 (182)
|.|++++++++.+.+++
T Consensus 184 g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 184 GRGVGDLLDAVLAALPE 200 (472)
T ss_pred CCCcHHHHHHHHhhccc
Confidence 99999999999988764
|
|
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-24 Score=151.60 Aligned_cols=123 Identities=19% Similarity=0.333 Sum_probs=102.5
Q ss_pred hhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEEC---------------CEEEEEEECCCCC
Q 030120 11 SLFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN---------------NIKFQVWDLGGQT 72 (182)
Q Consensus 11 ~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~---------------~~~~~~~D~~g~~ 72 (182)
.+.+...+||+++|+.|+|||||++++.++.+.. ..+|++... ..+.+. ...+.+|||+|++
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE 94 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE 94 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence 3556788999999999999999999999988876 667776543 344442 3568999999999
Q ss_pred CCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccc-----------cCCCeEEEEEeCCCCCCC
Q 030120 73 SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEE-----------LKGAVALIFANKQDLPGA 133 (182)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~~iivv~nK~D~~~~ 133 (182)
.+..++..++++++++|+|||+++..++..+..|+..+..... ..+.|+++|+||+|+.+.
T Consensus 95 rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 95 RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 9999999999999999999999999999999999988865421 125899999999999653
|
|
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=5e-24 Score=139.87 Aligned_cols=145 Identities=19% Similarity=0.209 Sum_probs=101.5
Q ss_pred EEEcCCCCCHHHHHHHHhcCCcc--cccc--cccceeeEEEECCEEEEEEECCCCCCCcc--------chhhhcCCCCeE
Q 030120 21 LVLGLDNAGKTTILYRLQMGEVV--STIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRP--------YWRCYFPNTEAV 88 (182)
Q Consensus 21 ~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~d~i 88 (182)
+++|.+|+|||||++++.+.... ...+ |...........+..+.+|||||+..... .+...++.+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 47899999999999999987632 2222 33344555666788999999999887543 334567889999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
++|+|+.+..+... .++..++.. .+.|+++|+||+|+.+.... ...... ....+++++|++++.|+++
T Consensus 81 i~v~d~~~~~~~~~--~~~~~~~~~---~~~piiiv~nK~D~~~~~~~---~~~~~~----~~~~~~~~~Sa~~~~gv~~ 148 (157)
T cd01894 81 LFVVDGREGLTPAD--EEIAKYLRK---SKKPVILVVNKVDNIKEEDE---AAEFYS----LGFGEPIPISAEHGRGIGD 148 (157)
T ss_pred EEEEeccccCCccH--HHHHHHHHh---cCCCEEEEEECcccCChHHH---HHHHHh----cCCCCeEEEecccCCCHHH
Confidence 99999987643322 233333333 35899999999999754222 111111 1112589999999999999
Q ss_pred HHHHHHHHH
Q 030120 169 GMDWLSNTL 177 (182)
Q Consensus 169 l~~~i~~~~ 177 (182)
+++++.+.+
T Consensus 149 l~~~l~~~~ 157 (157)
T cd01894 149 LLDAILELL 157 (157)
T ss_pred HHHHHHhhC
Confidence 999998753
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=155.12 Aligned_cols=155 Identities=23% Similarity=0.276 Sum_probs=109.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc--c-ccccccceeeEEEEC-CEEEEEEECCCCCC-------CccchhhhcCCCCe
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVV--S-TIPTIGFNVETVQYN-NIKFQVWDLGGQTS-------IRPYWRCYFPNTEA 87 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~--~-~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~-------~~~~~~~~~~~~d~ 87 (182)
.|+++|.||||||||++++++.... . ..+|..++...+.+. +..+.+||+||... +...+...++++++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~l 239 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRV 239 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCE
Confidence 8999999999999999999987633 2 344566777777775 78999999999632 11223334567999
Q ss_pred EEEEEeCCCc---ccHHHHHHHHHHHHhcc-ccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCC
Q 030120 88 VIYVVDSSDT---DRIQTAKEEFHAILEEE-ELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 88 ii~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
+++|+|+++. +.+.....|..++.... ...++|+++|+||+|+.+. ...+...... ...+++++||+++
T Consensus 240 lI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~l~~l~~~-----l~~~i~~iSA~tg 312 (424)
T PRK12297 240 IVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENLEEFKEK-----LGPKVFPISALTG 312 (424)
T ss_pred EEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHHHHHHHHH-----hCCcEEEEeCCCC
Confidence 9999999764 44555555555553322 1246899999999998432 2222222111 1156999999999
Q ss_pred CCHHHHHHHHHHHHhcC
Q 030120 164 EGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 164 ~~v~~l~~~i~~~~~~~ 180 (182)
+|+++++++|.+.+.+.
T Consensus 313 eGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 313 QGLDELLYAVAELLEET 329 (424)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999887654
|
|
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.3e-24 Score=159.71 Aligned_cols=160 Identities=22% Similarity=0.285 Sum_probs=110.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECCEEEEEEECCCCCCC-------ccchhhhcCCCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSI-------RPYWRCYFPNTE 86 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~~d 86 (182)
-..|+++|.||+|||||+|+|.+..... ..+|..++...+.+.+.++.+|||||.... .......+.+++
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhierad 238 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCA 238 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcC
Confidence 4589999999999999999999865432 344666788888888899999999995321 112233567899
Q ss_pred eEEEEEeCCCc----ccHHHHHHHHHHHHhcc----------ccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCc
Q 030120 87 AVIYVVDSSDT----DRIQTAKEEFHAILEEE----------ELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQ 152 (182)
Q Consensus 87 ~ii~v~d~~~~----~s~~~~~~~~~~~~~~~----------~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 152 (182)
++++|+|+++. +.+.....+..++.... ....+|+++|+||+|+.+... +.+.+... ....+
T Consensus 239 vLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e---l~e~l~~~-l~~~g 314 (500)
T PRK12296 239 VLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE---LAEFVRPE-LEARG 314 (500)
T ss_pred EEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH---HHHHHHHH-HHHcC
Confidence 99999999753 23444433333332221 224689999999999864322 21111111 11235
Q ss_pred eEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030120 153 WAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 153 ~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
++++++||+++.|+++++++|.+.+...
T Consensus 315 ~~Vf~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 315 WPVFEVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 6899999999999999999999887643
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.3e-24 Score=145.24 Aligned_cols=164 Identities=20% Similarity=0.169 Sum_probs=107.0
Q ss_pred hhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccccee--eEEEECCEEEEEEECCCCCC----------Cc
Q 030120 9 FSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVV-STIPTIGFNV--ETVQYNNIKFQVWDLGGQTS----------IR 75 (182)
Q Consensus 9 ~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~~~~~~~~D~~g~~~----------~~ 75 (182)
++..+.+...+|+++|++|+|||||+++++++.+. ...++.+... .... ...++.+|||||... +.
T Consensus 16 ~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~~~~~ 94 (196)
T PRK00454 16 LEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE-VNDKLRLVDLPGYGYAKVSKEEKEKWQ 94 (196)
T ss_pred HhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe-cCCeEEEeCCCCCCCcCCCchHHHHHH
Confidence 45556778899999999999999999999987643 3444433221 1122 246899999999532 12
Q ss_pred cchhhhcC---CCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCc
Q 030120 76 PYWRCYFP---NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQ 152 (182)
Q Consensus 76 ~~~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 152 (182)
.....+++ ..+++++++|..++.+... .++...+.. .+.|+++++||+|+.+....+.....+.... ....
T Consensus 95 ~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l-~~~~ 168 (196)
T PRK00454 95 KLIEEYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKAL-KFGD 168 (196)
T ss_pred HHHHHHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHH-HhcC
Confidence 22233444 3468888999887643322 223333332 3688999999999965433333222222111 1114
Q ss_pred eEEEEecCCCCCCHHHHHHHHHHHHhc
Q 030120 153 WAIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 153 ~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
.+++++||+++.|++++++.|.+.+.+
T Consensus 169 ~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 169 DEVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 579999999999999999999988765
|
|
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=156.70 Aligned_cols=148 Identities=18% Similarity=0.179 Sum_probs=108.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCc--ccccccc--cceeeEEEECCEEEEEEECCCCCCCccc--------hhhhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEV--VSTIPTI--GFNVETVQYNNIKFQVWDLGGQTSIRPY--------WRCYF 82 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~--~~~~~t~--~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~ 82 (182)
...++|+++|++|+|||||+|+|++... ....+++ +.....+.+++..+.+|||||....... ...++
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~ 280 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAI 280 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHH
Confidence 5678999999999999999999998763 3333333 3445566778899999999998655432 23577
Q ss_pred CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCC
Q 030120 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
+.+|++++|+|++++.+.... |+..... .+.|+++|+||+|+.+. ....+ ....+.+++.+||++
T Consensus 281 ~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-~~~~~--------~~~~~~~~~~vSak~ 345 (442)
T TIGR00450 281 KQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-SLEFF--------VSSKVLNSSNLSAKQ 345 (442)
T ss_pred hhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-chhhh--------hhhcCCceEEEEEec
Confidence 899999999999998776554 5444321 36899999999999643 11111 112234689999998
Q ss_pred CCCHHHHHHHHHHHHh
Q 030120 163 GEGLFEGMDWLSNTLK 178 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~~ 178 (182)
.|++++++.+.+.+.
T Consensus 346 -~gI~~~~~~L~~~i~ 360 (442)
T TIGR00450 346 -LKIKALVDLLTQKIN 360 (442)
T ss_pred -CCHHHHHHHHHHHHH
Confidence 689998888887664
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=150.66 Aligned_cols=159 Identities=21% Similarity=0.223 Sum_probs=107.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccc--cc-ccccee-eEEEECCEEEEEEECCCCCCCc--------cchhhhcC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVST--IP-TIGFNV-ETVQYNNIKFQVWDLGGQTSIR--------PYWRCYFP 83 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~~--~~-t~~~~~-~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~~ 83 (182)
+.-.|+++|++|+|||||+|++++..+... .+ |+.... ......+.++.+|||||..... ......+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 345699999999999999999999886542 22 222222 2222355799999999975432 22334678
Q ss_pred CCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCC
Q 030120 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
.+|++++|+|+++..+ ....++...+.. .+.|+++|+||+|+... ..................+++++||+++
T Consensus 84 ~~D~il~vvd~~~~~~--~~~~~i~~~l~~---~~~pvilVlNKiDl~~~--~~~l~~~~~~l~~~~~~~~i~~iSA~~~ 156 (292)
T PRK00089 84 DVDLVLFVVDADEKIG--PGDEFILEKLKK---VKTPVILVLNKIDLVKD--KEELLPLLEELSELMDFAEIVPISALKG 156 (292)
T ss_pred cCCEEEEEEeCCCCCC--hhHHHHHHHHhh---cCCCEEEEEECCcCCCC--HHHHHHHHHHHHhhCCCCeEEEecCCCC
Confidence 8999999999998422 233333333332 46899999999999732 1222222221111223567999999999
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 030120 164 EGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 164 ~~v~~l~~~i~~~~~~~~ 181 (182)
.|++++++++.+.+++++
T Consensus 157 ~gv~~L~~~L~~~l~~~~ 174 (292)
T PRK00089 157 DNVDELLDVIAKYLPEGP 174 (292)
T ss_pred CCHHHHHHHHHHhCCCCC
Confidence 999999999999887653
|
|
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-24 Score=144.37 Aligned_cols=157 Identities=22% Similarity=0.223 Sum_probs=112.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc---------------------ccccccceeeEEE--ECCEEEEEEECCCCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS---------------------TIPTIGFNVETVQ--YNNIKFQVWDLGGQT 72 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~---------------------~~~t~~~~~~~~~--~~~~~~~~~D~~g~~ 72 (182)
+..+|+++|+.++|||||+++|+...... ..-|.......+. .....+.++||||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 46789999999999999999997543110 1224445566666 788999999999999
Q ss_pred CCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhC-----ccc
Q 030120 73 SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALE-----LHK 147 (182)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~-----~~~ 147 (182)
.+.......+..+|++++|+|+.++... ...+.+..+ .. .+.|+++++||+|+... ...+....+. ...
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~-~~---~~~p~ivvlNK~D~~~~-~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKIL-RE---LGIPIIVVLNKMDLIEK-ELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHH-HH---TT-SEEEEEETCTSSHH-HHHHHHHHHHHHHHHHTT
T ss_pred ceeecccceecccccceeeeeccccccc-ccccccccc-cc---cccceEEeeeeccchhh-hHHHHHHHHHHHhccccc
Confidence 9888888889999999999999987432 223333333 22 47889999999999722 1122222221 111
Q ss_pred ccC-CceEEEEecCCCCCCHHHHHHHHHHHHh
Q 030120 148 IKN-RQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 148 ~~~-~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
... ..++++++||++|.|+++|++.|.+.+|
T Consensus 156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 156 ENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 122 3689999999999999999999999876
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-23 Score=157.31 Aligned_cols=159 Identities=18% Similarity=0.176 Sum_probs=111.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc--cccccc--ceeeEEEECCEEEEEEECCCCCCCccc-----------hh
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIG--FNVETVQYNNIKFQVWDLGGQTSIRPY-----------WR 79 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t~~--~~~~~~~~~~~~~~~~D~~g~~~~~~~-----------~~ 79 (182)
...++|+++|.+|+|||||+|++++..... ..+.+. .....+...+..+.+|||||....... ..
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 357999999999999999999999876432 333232 223445567889999999996532211 13
Q ss_pred hhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEec
Q 030120 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTC 159 (182)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
.+++.+|++++|+|+.++.+..... .+..+. . .+.|+++|+||+|+.+.....++...+..........+++++|
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~-~---~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~S 325 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDLR-IAGLAL-E---AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFIS 325 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHH-H---cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEe
Confidence 4678899999999999886654432 222222 2 4689999999999974433344444443333334567899999
Q ss_pred CCCCCCHHHHHHHHHHHHh
Q 030120 160 AIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 160 a~~~~~v~~l~~~i~~~~~ 178 (182)
|++|.|++++++.+.+...
T Consensus 326 A~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 326 ALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999887554
|
|
| >KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.8e-25 Score=144.89 Aligned_cols=163 Identities=17% Similarity=0.241 Sum_probs=122.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEE---CCEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQY---NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...+|+.+||+..+|||+|+-.+..+.|+. +.||.--++ ..+.+ ..+.+.+|||+|++.+...++..+..+|+++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 356899999999999999999998888887 777665332 22333 3467889999999999998888999999999
Q ss_pred EEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCCCCH-HHHHH--------HhCcccccC-CceEEEEe
Q 030120 90 YVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSE--------ALELHKIKN-RQWAIFKT 158 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~--------~~~~~~~~~-~~~~~~~~ 158 (182)
+||++.++.|++... +|+.++.... ++.|+++|++|.||.++... +++.. ......++. .-..|++|
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~c--p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHC--PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhC--CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence 999999999999865 6666664443 78999999999999743211 11110 000111111 23679999
Q ss_pred cCCCCCCHHHHHHHHHHHHhc
Q 030120 159 CAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 159 Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
||++..|++++|+..+.....
T Consensus 160 Sa~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 160 SALTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred hhhhhCCcHHHHHHHHHHHhc
Confidence 999999999999998876644
|
|
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.8e-24 Score=141.08 Aligned_cols=133 Identities=20% Similarity=0.287 Sum_probs=103.6
Q ss_pred ccc-ccccccceeeE--EEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhcccc
Q 030120 42 VVS-TIPTIGFNVET--VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEEL 116 (182)
Q Consensus 42 ~~~-~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~ 116 (182)
|.+ +.||++..... +.+ ....+.+|||||++.+...+..+++.+|++++|||++++.++.....|+..+.....
T Consensus 5 F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~- 83 (176)
T PTZ00099 5 FDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG- 83 (176)
T ss_pred cCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC-
Confidence 444 67788765543 344 347889999999999999999999999999999999999999999999888876533
Q ss_pred CCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030120 117 KGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 117 ~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
...|+++|+||+|+.+. ....+.... ....++.++++||++|.|++++|++|.+.+++.
T Consensus 84 ~~~piilVgNK~DL~~~~~v~~~e~~~~-----~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~ 144 (176)
T PTZ00099 84 KDVIIALVGNKTDLGDLRKVTYEEGMQK-----AQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNL 144 (176)
T ss_pred CCCeEEEEEECcccccccCCCHHHHHHH-----HHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 56899999999999542 222222211 223355789999999999999999999988753
|
|
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.1e-23 Score=152.60 Aligned_cols=153 Identities=18% Similarity=0.210 Sum_probs=107.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECC-EEEEEEECCCCCCC--ccch------hhhcCCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNN-IKFQVWDLGGQTSI--RPYW------RCYFPNT 85 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~--~~~~------~~~~~~~ 85 (182)
.+|+++|.+|+|||||+|+|.+..+.. ...|.+.....+.+.+ ..+.+|||||..+. ...+ ...+..+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 589999999999999999999876532 3445566666666655 48899999997432 1122 2346889
Q ss_pred CeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceE-EEEecCCCCC
Q 030120 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWA-IFKTCAIKGE 164 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~ 164 (182)
|++++|+|++++.+......+ ..++......+.|+++|+||+|+.+.... ..... . .+.+ ++.+||++|.
T Consensus 278 DlIL~VvDaS~~~~~e~l~~v-~~iL~el~~~~~pvIiV~NKiDL~~~~~~-~~~~~-~------~~~~~~v~ISAktG~ 348 (426)
T PRK11058 278 TLLLHVVDAADVRVQENIEAV-NTVLEEIDAHEIPTLLVMNKIDMLDDFEP-RIDRD-E------ENKPIRVWLSAQTGA 348 (426)
T ss_pred CEEEEEEeCCCccHHHHHHHH-HHHHHHhccCCCCEEEEEEcccCCCchhH-HHHHH-h------cCCCceEEEeCCCCC
Confidence 999999999998766555322 23333333347899999999999643111 11111 0 1112 5889999999
Q ss_pred CHHHHHHHHHHHHhc
Q 030120 165 GLFEGMDWLSNTLKS 179 (182)
Q Consensus 165 ~v~~l~~~i~~~~~~ 179 (182)
|+++++++|.+.+..
T Consensus 349 GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 349 GIPLLFQALTERLSG 363 (426)
T ss_pred CHHHHHHHHHHHhhh
Confidence 999999999988753
|
|
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-23 Score=137.86 Aligned_cols=142 Identities=24% Similarity=0.266 Sum_probs=95.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCcc----chhhhcCCCCeEEEEEeC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP----YWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~----~~~~~~~~~d~ii~v~d~ 94 (182)
+|+++|.+|+|||||+|++.+..... .++. .+.+... .+|||||...... .....+..+|++++|+|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~-~~~~-----~v~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~ 74 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA-RKTQ-----AVEFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGA 74 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC-ccce-----EEEECCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeC
Confidence 79999999999999999987654221 1222 2222222 2699999743222 223346899999999999
Q ss_pred CCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHH
Q 030120 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 174 (182)
++.+++ ...|+..+. .+.|+++++||+|+.+. ....+.+..... ....+++++||++|+|++++++.+.
T Consensus 75 ~~~~s~--~~~~~~~~~-----~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~---~~~~p~~~~Sa~~g~gi~~l~~~l~ 143 (158)
T PRK15467 75 NDPESR--LPAGLLDIG-----VSKRQIAVISKTDMPDA-DVAATRKLLLET---GFEEPIFELNSHDPQSVQQLVDYLA 143 (158)
T ss_pred CCcccc--cCHHHHhcc-----CCCCeEEEEEccccCcc-cHHHHHHHHHHc---CCCCCEEEEECCCccCHHHHHHHHH
Confidence 988654 223333321 35789999999998543 333333332211 2225899999999999999999998
Q ss_pred HHHhc
Q 030120 175 NTLKS 179 (182)
Q Consensus 175 ~~~~~ 179 (182)
+.+.+
T Consensus 144 ~~~~~ 148 (158)
T PRK15467 144 SLTKQ 148 (158)
T ss_pred Hhchh
Confidence 87653
|
|
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.2e-23 Score=136.14 Aligned_cols=154 Identities=21% Similarity=0.199 Sum_probs=103.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccc---ccc-cceeeEEEECCEEEEEEECCCCCCCcc--------chhhhcCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVSTI---PTI-GFNVETVQYNNIKFQVWDLGGQTSIRP--------YWRCYFPN 84 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~~~---~t~-~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~ 84 (182)
..+|+++|++|+|||||+|++.+....... .+. ..........+..+.+|||||...... .....+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999988754311 121 122223333568899999999765432 23445788
Q ss_pred CCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCC
Q 030120 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
+|++++|+|+.++. .....++...+.. .+.|+++|+||+|+... ...+.+............+++++|++++.
T Consensus 83 ~d~i~~v~d~~~~~--~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 155 (168)
T cd04163 83 VDLVLFVVDASEPI--GEGDEFILELLKK---SKTPVILVLNKIDLVKD--KEDLLPLLEKLKELGPFAEIFPISALKGE 155 (168)
T ss_pred CCEEEEEEECCCcc--CchHHHHHHHHHH---hCCCEEEEEEchhcccc--HHHHHHHHHHHHhccCCCceEEEEeccCC
Confidence 99999999999872 2233333333332 26899999999999632 12222222222222334679999999999
Q ss_pred CHHHHHHHHHHHH
Q 030120 165 GLFEGMDWLSNTL 177 (182)
Q Consensus 165 ~v~~l~~~i~~~~ 177 (182)
|++++++.|.+.+
T Consensus 156 ~~~~l~~~l~~~~ 168 (168)
T cd04163 156 NVDELLEEIVKYL 168 (168)
T ss_pred ChHHHHHHHHhhC
Confidence 9999999998753
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-23 Score=141.12 Aligned_cols=157 Identities=25% Similarity=0.360 Sum_probs=114.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEE----CCEEEEEEECCCCCCCccchhhhcCCC-CeEEEEEe
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNT-EAVIYVVD 93 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~-d~ii~v~d 93 (182)
+|+++|++|+|||||+++|..+.+....+++..+...... ....+.+||+||+..+...+..+++.+ +++|||+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 6899999999999999999998877654544444444433 367899999999999988888889998 99999999
Q ss_pred CCCc-ccHHHHHHHHHHHHhcc--ccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcc------------------------
Q 030120 94 SSDT-DRIQTAKEEFHAILEEE--ELKGAVALIFANKQDLPGALDDAAVSEALELH------------------------ 146 (182)
Q Consensus 94 ~~~~-~s~~~~~~~~~~~~~~~--~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~------------------------ 146 (182)
+.+. .++.....++..++... ...+.|+++++||.|+........+...+...
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~ 161 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKES 161 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 9987 56777777766665432 12579999999999986543332222211100
Q ss_pred ---------cc--cCCceEEEEecCCCCC-CHHHHHHHHHH
Q 030120 147 ---------KI--KNRQWAIFKTCAIKGE-GLFEGMDWLSN 175 (182)
Q Consensus 147 ---------~~--~~~~~~~~~~Sa~~~~-~v~~l~~~i~~ 175 (182)
.. ....+.+.++|++.+. |++.+.+||.+
T Consensus 162 ~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 162 LGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred cccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 00 0135678899998876 69999888865
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=5e-23 Score=151.80 Aligned_cols=160 Identities=18% Similarity=0.184 Sum_probs=110.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECC-EEEEEEECCCCCCC-------ccchhhhcCCCCe
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNN-IKFQVWDLGGQTSI-------RPYWRCYFPNTEA 87 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~-------~~~~~~~~~~~d~ 87 (182)
.|+++|.||||||||+|++.+.+... ..+|.......+.+.. ..+.++||||...- .......++.+++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radv 240 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRV 240 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCE
Confidence 79999999999999999999876422 2335556777777754 56999999996432 1223345788999
Q ss_pred EEEEEeCC---CcccHHHHHHHHHHHHhcc-ccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCC
Q 030120 88 VIYVVDSS---DTDRIQTAKEEFHAILEEE-ELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 88 ii~v~d~~---~~~s~~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
+++|+|++ +.+.+.....+..++.... ...+.|+++|+||+|+.......+....+... .....+++++||+++
T Consensus 241 lL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~--~~~~~~Vi~ISA~tg 318 (390)
T PRK12298 241 LLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA--LGWEGPVYLISAASG 318 (390)
T ss_pred EEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH--hCCCCCEEEEECCCC
Confidence 99999998 3445555555555554321 22468999999999986432222222211111 111235899999999
Q ss_pred CCHHHHHHHHHHHHhcC
Q 030120 164 EGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 164 ~~v~~l~~~i~~~~~~~ 180 (182)
.|++++++.|.+.+++.
T Consensus 319 ~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 319 LGVKELCWDLMTFIEEN 335 (390)
T ss_pred cCHHHHHHHHHHHhhhC
Confidence 99999999999988764
|
|
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-23 Score=142.84 Aligned_cols=161 Identities=27% Similarity=0.285 Sum_probs=116.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEE--C--CEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY--N--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~--~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
.+||+++|++|+|||||++++.+..+.. +.+|.......... . ..++.+|||+|+++++..+..++..++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 4899999999999999999999999887 55555533332222 2 56799999999999999999999999999999
Q ss_pred EeCCCcccHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHH-HH----------HhCcc-cccCCceEEEEe
Q 030120 92 VDSSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLPGALDDAAV-SE----------ALELH-KIKNRQWAIFKT 158 (182)
Q Consensus 92 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~-~~----------~~~~~-~~~~~~~~~~~~ 158 (182)
+|..+..++... ..|...+. .....+.|+++++||+|+......... .. ..... ........++++
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~-~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELR-ELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EecccchhhhHHHHHHHHHHH-HhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 999995554444 45554543 333246899999999999765322111 00 00000 001123339999
Q ss_pred cCC--CCCCHHHHHHHHHHHHh
Q 030120 159 CAI--KGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 159 Sa~--~~~~v~~l~~~i~~~~~ 178 (182)
|++ .+.++.++|..+...+.
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~ 185 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLL 185 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHH
Confidence 999 99999999999888764
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-23 Score=152.73 Aligned_cols=149 Identities=20% Similarity=0.191 Sum_probs=113.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc----ccccccceeeEEEECCEEEEEEECCCCCCCc---------cchhhhcCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIR---------PYWRCYFPN 84 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~~~~~~~~~ 84 (182)
..|+|+|.||+|||||+|+|.++...- ...|.+..+....+.+.++.++||+|-+... ......+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 579999999999999999999988554 3346678888999999999999999966432 224557789
Q ss_pred CCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCC
Q 030120 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
+|++|||+|...+-+ ...+.+.++++. .++|+++|+||+|..+. .....+... ...-.++++||.+|.
T Consensus 84 ADvilfvVD~~~Git--~~D~~ia~~Lr~---~~kpviLvvNK~D~~~~--e~~~~efys-----lG~g~~~~ISA~Hg~ 151 (444)
T COG1160 84 ADVILFVVDGREGIT--PADEEIAKILRR---SKKPVILVVNKIDNLKA--EELAYEFYS-----LGFGEPVPISAEHGR 151 (444)
T ss_pred CCEEEEEEeCCCCCC--HHHHHHHHHHHh---cCCCEEEEEEcccCchh--hhhHHHHHh-----cCCCCceEeehhhcc
Confidence 999999999998743 344445555553 46999999999997632 122222222 122248999999999
Q ss_pred CHHHHHHHHHHHHh
Q 030120 165 GLFEGMDWLSNTLK 178 (182)
Q Consensus 165 ~v~~l~~~i~~~~~ 178 (182)
|+.+|++.+.+.++
T Consensus 152 Gi~dLld~v~~~l~ 165 (444)
T COG1160 152 GIGDLLDAVLELLP 165 (444)
T ss_pred CHHHHHHHHHhhcC
Confidence 99999999999873
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.9e-23 Score=148.50 Aligned_cols=159 Identities=18% Similarity=0.160 Sum_probs=118.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc----ccccccceeeEEEECCEEEEEEECCCCCCCccc-----------hhh
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY-----------WRC 80 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-----------~~~ 80 (182)
..++++++|.||+|||||+|++++++..- ...|.+.....+++++.++.++||+|-..-... ...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 46999999999999999999999988543 444555666677778999999999994322111 234
Q ss_pred hcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEe
Q 030120 81 YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
.+..+|++++|+|++.+.+ .....+..+... .+.++++++||+|+.+. ...++....+..........+++.+
T Consensus 257 aI~~a~vvllviDa~~~~~--~qD~~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i 331 (444)
T COG1160 257 AIERADVVLLVIDATEGIS--EQDLRIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI 331 (444)
T ss_pred HHhhcCEEEEEEECCCCch--HHHHHHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence 5678999999999999844 333333333333 57899999999999765 3344555555444444566789999
Q ss_pred cCCCCCCHHHHHHHHHHHHhc
Q 030120 159 CAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 159 Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
||+++.++.++|+.+.+....
T Consensus 332 SA~~~~~i~~l~~~i~~~~~~ 352 (444)
T COG1160 332 SALTGQGLDKLFEAIKEIYEC 352 (444)
T ss_pred EecCCCChHHHHHHHHHHHHH
Confidence 999999999999999886553
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.1e-23 Score=161.99 Aligned_cols=159 Identities=17% Similarity=0.148 Sum_probs=112.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc--cccc--cccceeeEEEECCEEEEEEECCCCCCCc-c---------c-hhh
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVV--STIP--TIGFNVETVQYNNIKFQVWDLGGQTSIR-P---------Y-WRC 80 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~-~---------~-~~~ 80 (182)
...+|+++|.+|+|||||+|++++.... ...+ |.+.....+.+.+.++.+|||||..... . . ...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 4589999999999999999999998742 3233 3344445566788889999999964211 1 1 123
Q ss_pred hcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecC
Q 030120 81 YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
.++.+|++++|+|++++.+..... ++..+.. .+.|+++|+||+|+.+....+.+..............+++++||
T Consensus 529 ~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSA 603 (712)
T PRK09518 529 AIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSA 603 (712)
T ss_pred HhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEEC
Confidence 468899999999999987766543 3333322 46899999999999654332333333322211234457899999
Q ss_pred CCCCCHHHHHHHHHHHHhc
Q 030120 161 IKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 161 ~~~~~v~~l~~~i~~~~~~ 179 (182)
++|.|++++++.+.+.+.+
T Consensus 604 ktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 604 KTGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999987764
|
|
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.2e-23 Score=157.97 Aligned_cols=155 Identities=18% Similarity=0.191 Sum_probs=111.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccc--cccceeeEEEECCE-EEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQYNNI-KFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~--t~~~~~~~~~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
.+..+|+++|++++|||||++++.+..+.. ..+ |.......+.+.+. .+.+||||||+.+..++......+|++++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 466899999999999999999998877655 222 33344445555444 89999999999999999888999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccc----cCCceEEEEecCCCCCCH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI----KNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v 166 (182)
|+|++++... .....+... ...+.|+++++||+|+... ..+++...+..... .....+++++||++|.|+
T Consensus 165 VVda~dgv~~-qT~e~i~~~----~~~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI 238 (587)
T TIGR00487 165 VVAADDGVMP-QTIEAISHA----KAANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGI 238 (587)
T ss_pred EEECCCCCCH-hHHHHHHHH----HHcCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCCh
Confidence 9999876322 222222221 1246899999999999643 33344433322111 112357999999999999
Q ss_pred HHHHHHHHH
Q 030120 167 FEGMDWLSN 175 (182)
Q Consensus 167 ~~l~~~i~~ 175 (182)
+++++++..
T Consensus 239 ~eLl~~I~~ 247 (587)
T TIGR00487 239 DELLDMILL 247 (587)
T ss_pred HHHHHhhhh
Confidence 999999864
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.1e-23 Score=154.48 Aligned_cols=149 Identities=21% Similarity=0.245 Sum_probs=106.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc--ccc--cccceeeEEEECCEEEEEEECCCCCC--------CccchhhhcCCCC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQYNNIKFQVWDLGGQTS--------IRPYWRCYFPNTE 86 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~~~d 86 (182)
+|+++|.+|+|||||+|++.+..... ..+ |.+..+..+.+.+..+.+|||||... +......+++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 58999999999999999999877432 333 33455666777889999999999632 2334556788999
Q ss_pred eEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030120 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
++++|+|+.++.+... ..+..+++. .+.|+++|+||+|+.+.... ..+.. .....+++++||++|.|+
T Consensus 81 ~vl~vvD~~~~~~~~d--~~i~~~l~~---~~~piilVvNK~D~~~~~~~--~~~~~-----~lg~~~~~~vSa~~g~gv 148 (429)
T TIGR03594 81 VILFVVDGREGLTPED--EEIAKWLRK---SGKPVILVANKIDGKKEDAV--AAEFY-----SLGFGEPIPISAEHGRGI 148 (429)
T ss_pred EEEEEEeCCCCCCHHH--HHHHHHHHH---hCCCEEEEEECccCCccccc--HHHHH-----hcCCCCeEEEeCCcCCCh
Confidence 9999999988644322 233333333 36899999999998654221 11111 111225899999999999
Q ss_pred HHHHHHHHHHHhc
Q 030120 167 FEGMDWLSNTLKS 179 (182)
Q Consensus 167 ~~l~~~i~~~~~~ 179 (182)
.++++.+.+.+.+
T Consensus 149 ~~ll~~i~~~l~~ 161 (429)
T TIGR03594 149 GDLLDAILELLPE 161 (429)
T ss_pred HHHHHHHHHhcCc
Confidence 9999999988754
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=133.11 Aligned_cols=150 Identities=21% Similarity=0.170 Sum_probs=105.6
Q ss_pred EEcCCCCCHHHHHHHHhcCCccc----ccccccceeeEEEEC-CEEEEEEECCCCCCCcc-------chhhhcCCCCeEE
Q 030120 22 VLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYN-NIKFQVWDLGGQTSIRP-------YWRCYFPNTEAVI 89 (182)
Q Consensus 22 i~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~~~-------~~~~~~~~~d~ii 89 (182)
++|++|+|||||++++.+..... ...+........... ...+.+|||||...... ....++..+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 58999999999999999876553 111222333333333 67999999999776543 3345778999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
+|+|+.+..+..... +..... ..+.|+++|+||+|+.......................+++++||+++.|++++
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 81 FVVDADLRADEEEEK-LLELLR----ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHHHH----hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 999999886654443 222222 257899999999999765444333221222333456678999999999999999
Q ss_pred HHHHHHH
Q 030120 170 MDWLSNT 176 (182)
Q Consensus 170 ~~~i~~~ 176 (182)
++++.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9999875
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=153.16 Aligned_cols=147 Identities=22% Similarity=0.288 Sum_probs=104.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc--cccc--cccceeeEEEECCEEEEEEECCCCCC--------CccchhhhcCCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVV--STIP--TIGFNVETVQYNNIKFQVWDLGGQTS--------IRPYWRCYFPNT 85 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~~~ 85 (182)
.+|+++|.+|+|||||+|+|.+.... ...+ |.+.....+.+.+..+.+|||||+.. +......++..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 57999999999999999999987743 2333 34456666777889999999999886 223345567899
Q ss_pred CeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCC
Q 030120 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
|++++|+|+.++.+.. ..++..+++. .+.|+++|+||+|+.+. .....+.... ....++++||++|.|
T Consensus 82 d~il~vvd~~~~~~~~--~~~~~~~l~~---~~~piilv~NK~D~~~~--~~~~~~~~~l-----g~~~~~~iSa~~g~g 149 (435)
T PRK00093 82 DVILFVVDGRAGLTPA--DEEIAKILRK---SNKPVILVVNKVDGPDE--EADAYEFYSL-----GLGEPYPISAEHGRG 149 (435)
T ss_pred CEEEEEEECCCCCCHH--HHHHHHHHHH---cCCcEEEEEECccCccc--hhhHHHHHhc-----CCCCCEEEEeeCCCC
Confidence 9999999998864432 2233333333 36899999999997542 1122222111 111379999999999
Q ss_pred HHHHHHHHHHH
Q 030120 166 LFEGMDWLSNT 176 (182)
Q Consensus 166 v~~l~~~i~~~ 176 (182)
+.++++.+.+.
T Consensus 150 v~~l~~~I~~~ 160 (435)
T PRK00093 150 IGDLLDAILEE 160 (435)
T ss_pred HHHHHHHHHhh
Confidence 99999999873
|
|
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-23 Score=139.50 Aligned_cols=151 Identities=19% Similarity=0.187 Sum_probs=94.5
Q ss_pred hhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc--eeeEEEECCEEEEEEECCCCCC----------Cccc
Q 030120 11 SLFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQYNNIKFQVWDLGGQTS----------IRPY 77 (182)
Q Consensus 11 ~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~~~~~~~D~~g~~~----------~~~~ 77 (182)
+.+..+..+|+++|.+|+|||||+|++.+..+.. ..++.+. ....+..+ ..+.+|||||... +...
T Consensus 12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHHH
Confidence 3455888999999999999999999999886332 3333322 22223233 3799999999532 1222
Q ss_pred hhhhcC---CCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccc-cCCce
Q 030120 78 WRCYFP---NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI-KNRQW 153 (182)
Q Consensus 78 ~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~ 153 (182)
...+++ .++++++|+|++++.+.... .+...+.. .+.|+++++||+|+.+..........+..... ....+
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~ 165 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDP 165 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCC
Confidence 233443 35899999999886443333 22223322 46899999999998643222222222211111 12345
Q ss_pred EEEEecCCCCCCHH
Q 030120 154 AIFKTCAIKGEGLF 167 (182)
Q Consensus 154 ~~~~~Sa~~~~~v~ 167 (182)
+++++||++|+|++
T Consensus 166 ~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 166 SVQLFSSLKKTGID 179 (179)
T ss_pred ceEEEECCCCCCCC
Confidence 79999999999973
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-22 Score=159.15 Aligned_cols=156 Identities=21% Similarity=0.199 Sum_probs=112.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccc--cccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
..+...|+++|+.++|||||+++|.+..+.. ... |.......+.+.+..+.+|||||++.+..++......+|++++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 3577899999999999999999998776654 222 3334444566678899999999999999999988999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCccc--c--cCCceEEEEecCCCCCCH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHK--I--KNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~Sa~~~~~v 166 (182)
|+|++++...+ ....+... ...+.|+++++||+|+... ....+...+.... . ....++++++||++|.|+
T Consensus 367 VVdAddGv~~q-T~e~i~~a----~~~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI 440 (787)
T PRK05306 367 VVAADDGVMPQ-TIEAINHA----KAAGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGI 440 (787)
T ss_pred EEECCCCCCHh-HHHHHHHH----HhcCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence 99998863222 22222221 2246899999999999653 2333333322111 0 123478999999999999
Q ss_pred HHHHHHHHH
Q 030120 167 FEGMDWLSN 175 (182)
Q Consensus 167 ~~l~~~i~~ 175 (182)
++++++|..
T Consensus 441 ~eLle~I~~ 449 (787)
T PRK05306 441 DELLEAILL 449 (787)
T ss_pred hHHHHhhhh
Confidence 999999874
|
|
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-22 Score=155.00 Aligned_cols=157 Identities=18% Similarity=0.192 Sum_probs=110.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC-------ccc-cccc------ccc--e--eeEEEEC-----CEEEEEEECCCCCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE-------VVS-TIPT------IGF--N--VETVQYN-----NIKFQVWDLGGQTS 73 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~-------~~~-~~~t------~~~--~--~~~~~~~-----~~~~~~~D~~g~~~ 73 (182)
..+++++|+.++|||||+++|+... +.. ...+ .++ . ...+.+. ...+.+|||||+..
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4589999999999999999998642 111 1111 122 2 2223332 27889999999999
Q ss_pred CccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCce
Q 030120 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQW 153 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 153 (182)
+...+..+++.+|++++|+|++++.+.+....|.... . .+.|+++|+||+|+.... ..++...+... ......
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~-~~~~~~el~~~-lg~~~~ 155 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSAD-PERVKKEIEEV-IGLDAS 155 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccC-HHHHHHHHHHH-hCCCcc
Confidence 9988999999999999999999887666555444332 2 367999999999986432 22222222211 111223
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030120 154 AIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 154 ~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
.++++||++|.|++++++.|.+.++..
T Consensus 156 ~vi~vSAktG~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 156 EAILASAKTGIGIEEILEAIVKRVPPP 182 (595)
T ss_pred eEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence 589999999999999999999988754
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-22 Score=145.89 Aligned_cols=151 Identities=19% Similarity=0.182 Sum_probs=113.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc----ccccccceeeEEEECCEEEEEEECCCCCCCccch--------hhhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW--------RCYF 82 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~ 82 (182)
...++++++|.||+|||||+|.|++++... ..+|.+.-...+..++.++.++||+|........ ...+
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence 678999999999999999999999988543 4446667778888899999999999976554433 3456
Q ss_pred CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCC
Q 030120 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
+.+|.+++|+|++.+.+-.+... .. ....+.|+++|.||.|+........+ ....+.+++.+|+++
T Consensus 295 ~~ADlvL~v~D~~~~~~~~d~~~--~~----~~~~~~~~i~v~NK~DL~~~~~~~~~--------~~~~~~~~i~iSa~t 360 (454)
T COG0486 295 EEADLVLFVLDASQPLDKEDLAL--IE----LLPKKKPIIVVLNKADLVSKIELESE--------KLANGDAIISISAKT 360 (454)
T ss_pred HhCCEEEEEEeCCCCCchhhHHH--HH----hcccCCCEEEEEechhcccccccchh--------hccCCCceEEEEecC
Confidence 88999999999998633222221 11 12246899999999999765443222 112233699999999
Q ss_pred CCCHHHHHHHHHHHHhc
Q 030120 163 GEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~~~ 179 (182)
|+|++.+.+.|.+.+..
T Consensus 361 ~~Gl~~L~~~i~~~~~~ 377 (454)
T COG0486 361 GEGLDALREAIKQLFGK 377 (454)
T ss_pred ccCHHHHHHHHHHHHhh
Confidence 99999999999887654
|
|
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-22 Score=157.33 Aligned_cols=156 Identities=21% Similarity=0.160 Sum_probs=109.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC---ccc-cc--ccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGE---VVS-TI--PTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~---~~~-~~--~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+.|+++|++++|||||+++|.+.. +.. .. .|.+.....+...+..+.+||+||++.+...+..++.++|++++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 468999999999999999998743 222 22 234444555666778999999999999988888888999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCCCCCHHHHHHHhCcccc--cC-CceEEEEecCCCCCCHH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGALDDAAVSEALELHKI--KN-RQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~Sa~~~~~v~ 167 (182)
+|++++.. ....+.+. ++.. .+.| +++|+||+|+.+......+......... .. .+++++++||++|.|++
T Consensus 81 VDa~~G~~-~qT~ehl~-il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~ 155 (581)
T TIGR00475 81 VDADEGVM-TQTGEHLA-VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIG 155 (581)
T ss_pred EECCCCCc-HHHHHHHH-HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCch
Confidence 99998532 22222222 2222 3566 9999999999754222222222211110 11 25789999999999999
Q ss_pred HHHHHHHHHHh
Q 030120 168 EGMDWLSNTLK 178 (182)
Q Consensus 168 ~l~~~i~~~~~ 178 (182)
++++.+.+.+.
T Consensus 156 eL~~~L~~l~~ 166 (581)
T TIGR00475 156 ELKKELKNLLE 166 (581)
T ss_pred hHHHHHHHHHH
Confidence 99999877654
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-22 Score=158.05 Aligned_cols=153 Identities=20% Similarity=0.264 Sum_probs=105.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc--cccccc--ceeeEEEECCEEEEEEECCCCCC--------Cccchhhhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIG--FNVETVQYNNIKFQVWDLGGQTS--------IRPYWRCYF 82 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t~~--~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~ 82 (182)
....+|+++|.+|+|||||+|++++..... ..++++ .......+.+..+.+|||||.+. +......++
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 344689999999999999999999876533 333332 33334455778999999999763 223345567
Q ss_pred CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCC
Q 030120 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
+.+|++++|+|+.++.. .....+...+.. .+.|+++|+||+|+.... ....+.... ... ..+++||++
T Consensus 353 ~~aD~iL~VvDa~~~~~--~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~--~~~~~~~~l----g~~-~~~~iSA~~ 420 (712)
T PRK09518 353 SLADAVVFVVDGQVGLT--STDERIVRMLRR---AGKPVVLAVNKIDDQASE--YDAAEFWKL----GLG-EPYPISAMH 420 (712)
T ss_pred HhCCEEEEEEECCCCCC--HHHHHHHHHHHh---cCCCEEEEEECcccccch--hhHHHHHHc----CCC-CeEEEECCC
Confidence 89999999999987532 333333333333 578999999999985431 111111111 111 257899999
Q ss_pred CCCHHHHHHHHHHHHhc
Q 030120 163 GEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~~~ 179 (182)
|.|++++++++.+.+++
T Consensus 421 g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 421 GRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCCchHHHHHHHHhccc
Confidence 99999999999988754
|
|
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.7e-22 Score=155.40 Aligned_cols=156 Identities=18% Similarity=0.207 Sum_probs=110.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cc--ccccceeeEEEE----CCEEEEEEECCCCCCCccchhhhcCCCCe
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TI--PTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~--~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
.+...|+++|++++|||||+++|.+..+.. .. .|.......+.+ .+..+.+|||||++.+..++..++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 567799999999999999999998876654 22 232222223333 35899999999999999999989999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCccc----ccCCceEEEEecCCCC
Q 030120 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHK----IKNRQWAIFKTCAIKG 163 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~ 163 (182)
+++|+|+.++...+.. ..+..+ . ..+.|+++++||+|+... ....+...+.... .....++++++||++|
T Consensus 322 aILVVDA~dGv~~QT~-E~I~~~-k---~~~iPiIVViNKiDl~~~-~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG 395 (742)
T CHL00189 322 AILIIAADDGVKPQTI-EAINYI-Q---AANVPIIVAINKIDKANA-NTERIKQQLAKYNLIPEKWGGDTPMIPISASQG 395 (742)
T ss_pred EEEEEECcCCCChhhH-HHHHHH-H---hcCceEEEEEECCCcccc-CHHHHHHHHHHhccchHhhCCCceEEEEECCCC
Confidence 9999999876432222 222222 2 246899999999999653 2333333332110 0123478999999999
Q ss_pred CCHHHHHHHHHHH
Q 030120 164 EGLFEGMDWLSNT 176 (182)
Q Consensus 164 ~~v~~l~~~i~~~ 176 (182)
.|+++++++|...
T Consensus 396 ~GIdeLle~I~~l 408 (742)
T CHL00189 396 TNIDKLLETILLL 408 (742)
T ss_pred CCHHHHHHhhhhh
Confidence 9999999998764
|
|
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.6e-23 Score=128.40 Aligned_cols=109 Identities=28% Similarity=0.466 Sum_probs=79.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc---ccc--cccceeeEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS---TIP--TIGFNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~---~~~--t~~~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
||+|+|++|+|||||+++|.+..+.. ..+ +.......... ....+.+||++|++.+...+...+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 79999999999999999999988761 222 22222222222 444689999999988888777778999999999
Q ss_pred EeCCCcccHHHHHHH---HHHHHhccccCCCeEEEEEeCCC
Q 030120 92 VDSSDTDRIQTAKEE---FHAILEEEELKGAVALIFANKQD 129 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~---~~~~~~~~~~~~~~iivv~nK~D 129 (182)
||++++.+++.+..+ +..+... ..+.|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 999999998887554 3333221 24699999999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.9e-22 Score=148.01 Aligned_cols=153 Identities=17% Similarity=0.188 Sum_probs=100.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc----------------------------------cccccccceeeEEEEC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVV----------------------------------STIPTIGFNVETVQYN 59 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~----------------------------------~~~~t~~~~~~~~~~~ 59 (182)
....++|+++|++++|||||+++|+...-. ....|.+.....+..+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 356789999999999999999999733210 0122444455556668
Q ss_pred CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH---
Q 030120 60 NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD--- 136 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--- 136 (182)
+..+.+|||||++.+.......+..+|++++|+|+++.........+...+.... ...|+++++||+|+.+....
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHH
Confidence 8999999999998887666666788999999999987311222222222232222 12479999999999652211
Q ss_pred ---HHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 137 ---AAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 137 ---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
+++...+.........++++++||++|.|+++
T Consensus 161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred HHHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence 12222222111122246899999999999986
|
|
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.6e-21 Score=133.60 Aligned_cols=150 Identities=23% Similarity=0.242 Sum_probs=102.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECCEEEEEEECCCCCCCc-------cchhhhcCCCCeE
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSIR-------PYWRCYFPNTEAV 88 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~d~i 88 (182)
+++++|++|+|||||++++.+..... ..+|.+.....+.+.+.++++|||||..... ......++++|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 78999999999999999999876322 2335556667777889999999999975332 2334578999999
Q ss_pred EEEEeCCCccc-HHHHHHHH----------------------------------------HHHHhcc-------------
Q 030120 89 IYVVDSSDTDR-IQTAKEEF----------------------------------------HAILEEE------------- 114 (182)
Q Consensus 89 i~v~d~~~~~s-~~~~~~~~----------------------------------------~~~~~~~------------- 114 (182)
++|+|+++... .......+ ..++++.
T Consensus 82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~ 161 (233)
T cd01896 82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI 161 (233)
T ss_pred EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence 99999987642 11111111 1111110
Q ss_pred ---------c--cCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 030120 115 ---------E--LKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 115 ---------~--~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
. ..-.|+++|+||+|+.+. .+... .. . ...++++||+++.|++++++.+.+.+.
T Consensus 162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~---~~~~~-~~----~--~~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 162 TVDDLIDVIEGNRVYIPCLYVYNKIDLISI---EELDL-LA----R--QPNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred CHHHHHHHHhCCceEeeEEEEEECccCCCH---HHHHH-Hh----c--CCCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 0 012589999999998643 23221 11 1 124899999999999999999988653
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.3e-22 Score=133.40 Aligned_cols=145 Identities=18% Similarity=0.152 Sum_probs=95.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCc------------c-------cccccccceeeEEEECCEEEEEEECCCCCCCccc
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEV------------V-------STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~------------~-------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 77 (182)
.++|+++|+.++|||||+++|++... . ....|.......+..++..+.++||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 57899999999999999999975310 0 0111222223334446788999999999888777
Q ss_pred hhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCCCCCH-H----HHHHHhCcccccCC
Q 030120 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGALDD-A----AVSEALELHKIKNR 151 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~-~----~~~~~~~~~~~~~~ 151 (182)
....+..+|++++|+|+..+.. ......+..+ .. .+.| +++++||+|+...... + ++...+........
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~-~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~ 156 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPM-PQTREHLLLA-RQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD 156 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 7788899999999999987632 2222233322 22 3455 7899999998632211 1 22222222222234
Q ss_pred ceEEEEecCCCCCCH
Q 030120 152 QWAIFKTCAIKGEGL 166 (182)
Q Consensus 152 ~~~~~~~Sa~~~~~v 166 (182)
..+++++||++|.|+
T Consensus 157 ~v~iipiSa~~g~n~ 171 (195)
T cd01884 157 NTPIVRGSALKALEG 171 (195)
T ss_pred CCeEEEeeCccccCC
Confidence 688999999999874
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-21 Score=128.38 Aligned_cols=167 Identities=17% Similarity=0.159 Sum_probs=112.3
Q ss_pred hhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCC-cccccccccceeeEEEECC-EEEEEEECCCC----------CCCcc
Q 030120 9 FSSLFGNKEARILVLGLDNAGKTTILYRLQMGE-VVSTIPTIGFNVETVQYNN-IKFQVWDLGGQ----------TSIRP 76 (182)
Q Consensus 9 ~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~----------~~~~~ 76 (182)
+.+++.+...-|+++|.+|+|||||+|++++++ ....+.|.+.+....-+.- ..+.++|.||. +.+..
T Consensus 16 ~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~k~~~e~w~~ 95 (200)
T COG0218 16 IKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVPKEVKEKWKK 95 (200)
T ss_pred HhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCcccccCCHHHHHHHHH
Confidence 455666788899999999999999999999966 3444445554433332321 23899999993 23344
Q ss_pred chhhhcC---CCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCce
Q 030120 77 YWRCYFP---NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQW 153 (182)
Q Consensus 77 ~~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 153 (182)
+...|++ +..+++.++|+..+. ......+.+++.. .++|+++++||+|..............+........+
T Consensus 96 ~i~~YL~~R~~L~~vvlliD~r~~~--~~~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~ 170 (200)
T COG0218 96 LIEEYLEKRANLKGVVLLIDARHPP--KDLDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPD 170 (200)
T ss_pred HHHHHHhhchhheEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCc
Confidence 4455554 357888999998773 3444444555544 5799999999999987644433333333211122222
Q ss_pred --EEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030120 154 --AIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 154 --~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
.++..|+.++.|++++.+.|.+.+...
T Consensus 171 ~~~~~~~ss~~k~Gi~~l~~~i~~~~~~~ 199 (200)
T COG0218 171 DQWVVLFSSLKKKGIDELKAKILEWLKEA 199 (200)
T ss_pred cceEEEEecccccCHHHHHHHHHHHhhcc
Confidence 288899999999999999999887653
|
|
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.1e-21 Score=133.53 Aligned_cols=156 Identities=21% Similarity=0.244 Sum_probs=110.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcc--------------c-------ccccccceeeEEEECCEEEEEEECCCCCCCccc
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVV--------------S-------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~--------------~-------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 77 (182)
+|+++|++|+|||||+++++...-. . ...+.......+.+++.++.+|||||+..+...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999999753210 0 011222344556678899999999999999888
Q ss_pred hhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH---HHHHHHh-----------
Q 030120 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD---AAVSEAL----------- 143 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~---~~~~~~~----------- 143 (182)
+..+++.+|++++|+|+.++... ....++..... .+.|+++++||+|+...... .++...+
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~ 155 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG 155 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc
Confidence 88899999999999999987543 33334443322 36899999999998643211 1111111
Q ss_pred ---------------------------------------------CcccccCCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 030120 144 ---------------------------------------------ELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 144 ---------------------------------------------~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
.........+|++..||.++.|++.|++.+.+.++
T Consensus 156 ~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 156 LAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred EeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence 01111234578999999999999999999999886
Q ss_pred c
Q 030120 179 S 179 (182)
Q Consensus 179 ~ 179 (182)
.
T Consensus 236 ~ 236 (237)
T cd04168 236 T 236 (237)
T ss_pred C
Confidence 4
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.4e-21 Score=148.57 Aligned_cols=159 Identities=20% Similarity=0.171 Sum_probs=110.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC--cc-----c-c----------cccccceeeEEEEC-----CEEEEEEECCCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGE--VV-----S-T----------IPTIGFNVETVQYN-----NIKFQVWDLGGQ 71 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~--~~-----~-~----------~~t~~~~~~~~~~~-----~~~~~~~D~~g~ 71 (182)
++..+++++|+.++|||||+++|+... +. . . ..|.......+.+. ...+.+|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 345689999999999999999997531 11 0 0 11222222333332 578999999999
Q ss_pred CCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCC
Q 030120 72 TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNR 151 (182)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 151 (182)
..+...+..+++.+|++++|+|++++........|.. ... .+.|+++|+||+|+.... ...+...+... ....
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~-~~~----~~lpiIvViNKiDl~~a~-~~~v~~ei~~~-lg~~ 157 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYL-ALE----NDLEIIPVLNKIDLPAAD-PERVKQEIEDV-IGID 157 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH-HHH----CCCCEEEEEECCCCCccc-HHHHHHHHHHH-hCCC
Confidence 9999889999999999999999998765444433322 221 368999999999986432 22222222111 1112
Q ss_pred ceEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030120 152 QWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 152 ~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
...++++||++|.|+++++++|.+.++..
T Consensus 158 ~~~vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 158 ASDAVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred cceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence 23589999999999999999999988754
|
|
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-21 Score=152.72 Aligned_cols=151 Identities=20% Similarity=0.196 Sum_probs=106.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-ccc--cccceeeEEEECCEEEEEEECCCCCCCccc----------hhhhc
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPY----------WRCYF 82 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~----------~~~~~ 82 (182)
+..+|+++|++|+|||||+|++.+..... ..+ |.+.....+.+.+.++.+|||||..++... ...++
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 35789999999999999999998865432 333 333444556667889999999998765421 12232
Q ss_pred --CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecC
Q 030120 83 --PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 83 --~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
..+|++++|+|+++.++. ..+..++.+ .+.|+++++||+|+.+........+.+. +..+++++++|+
T Consensus 82 ~~~~aD~vI~VvDat~ler~---l~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~----~~LG~pVvpiSA 150 (772)
T PRK09554 82 LSGDADLLINVVDASNLERN---LYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALS----ARLGCPVIPLVS 150 (772)
T ss_pred hccCCCEEEEEecCCcchhh---HHHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHH----HHhCCCEEEEEe
Confidence 478999999999986442 223333332 3689999999999864332222122221 234568999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q 030120 161 IKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 161 ~~~~~v~~l~~~i~~~~ 177 (182)
++++|++++.+.+.+..
T Consensus 151 ~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 151 TRGRGIEALKLAIDRHQ 167 (772)
T ss_pred ecCCCHHHHHHHHHHhh
Confidence 99999999999988754
|
|
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-21 Score=147.70 Aligned_cols=153 Identities=14% Similarity=0.107 Sum_probs=100.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC--Cccc--------------------------------ccccccceeeEEEEC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMG--EVVS--------------------------------TIPTIGFNVETVQYN 59 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~--~~~~--------------------------------~~~t~~~~~~~~~~~ 59 (182)
....++|+++|+.++|||||+++|+.. .+.. ...|.+.....+...
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 456789999999999999999999752 1110 111333344445557
Q ss_pred CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH--
Q 030120 60 NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLPGALDD-- 136 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-- 136 (182)
+..+.+|||||++.+.......+..+|++++|+|++++++.... ..+...+.... ...|+++++||+|+.+....
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~~ 161 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEEF 161 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHHH
Confidence 88999999999998876666677899999999999987532111 11111222221 23589999999999642211
Q ss_pred ----HHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 137 ----AAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 137 ----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
.++.............++++++||++|.|+.+
T Consensus 162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 12222222121222357899999999999986
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.3e-21 Score=122.78 Aligned_cols=158 Identities=25% Similarity=0.304 Sum_probs=126.4
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc----------cc---ccccceeeEEEECC-EEEEEEECCCCCCCccc
Q 030120 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVS----------TI---PTIGFNVETVQYNN-IKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 12 ~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~----------~~---~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~ 77 (182)
...-...||++.|+.++||||+++++..+.... .. .|+.+.+....+.+ ..+.+++||||+++..+
T Consensus 5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm 84 (187)
T COG2229 5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFM 84 (187)
T ss_pred cccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHH
Confidence 345677899999999999999999998877311 11 24446666666644 89999999999999999
Q ss_pred hhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEE
Q 030120 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFK 157 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
|..+.+.+.++++++|.+.+..+ ... .+..++... ..+|+++++||.|+.+...++.+.+.+.... ...++++
T Consensus 85 ~~~l~~ga~gaivlVDss~~~~~-~a~-~ii~f~~~~--~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---~~~~vi~ 157 (187)
T COG2229 85 WEILSRGAVGAIVLVDSSRPITF-HAE-EIIDFLTSR--NPIPVVVAINKQDLFDALPPEKIREALKLEL---LSVPVIE 157 (187)
T ss_pred HHHHhCCcceEEEEEecCCCcch-HHH-HHHHHHhhc--cCCCEEEEeeccccCCCCCHHHHHHHHHhcc---CCCceee
Confidence 99999999999999999999877 223 333343332 1299999999999998888888888887543 4567999
Q ss_pred ecCCCCCCHHHHHHHHHHH
Q 030120 158 TCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 158 ~Sa~~~~~v~~l~~~i~~~ 176 (182)
++|.++++..+.++.+...
T Consensus 158 ~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 158 IDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eecccchhHHHHHHHHHhh
Confidence 9999999999999888776
|
|
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=146.08 Aligned_cols=162 Identities=15% Similarity=0.073 Sum_probs=105.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccc------cccccceeeEE--------------EE------------CCEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVST------IPTIGFNVETV--------------QY------------NNIK 62 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~------~~t~~~~~~~~--------------~~------------~~~~ 62 (182)
+..++|+++|++++|||||+++|.+...... ..|.......+ .. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 4678999999999999999999965422110 01111110000 00 1467
Q ss_pred EEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHH
Q 030120 63 FQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEA 142 (182)
Q Consensus 63 ~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~ 142 (182)
+.+|||||++.+...+......+|++++|+|++++.......+.+..+ ... ...|+++++||+|+.+.....+....
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EII--GIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHc--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence 999999999999888888888899999999999753112222233222 221 13578999999999754222111122
Q ss_pred hCcccc--cCCceEEEEecCCCCCCHHHHHHHHHHHHhc
Q 030120 143 LELHKI--KNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 143 ~~~~~~--~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
+..... ....++++++||++|.|+++++++|...++.
T Consensus 159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~ 197 (406)
T TIGR03680 159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPT 197 (406)
T ss_pred HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCC
Confidence 211110 1235789999999999999999999987664
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.3e-21 Score=148.85 Aligned_cols=158 Identities=19% Similarity=0.208 Sum_probs=115.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC--Cccc-----------------ccccccceeeEEEECCEEEEEEECCCCCCCccch
Q 030120 18 ARILVLGLDNAGKTTILYRLQMG--EVVS-----------------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW 78 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~--~~~~-----------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 78 (182)
-+|+|+|+.++|||||+++|+.. .+.. ...|+......+.+.+..+.+|||||+.++...+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 37999999999999999999852 2211 1123334445677789999999999999999888
Q ss_pred hhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH---HHHHHHhCcccc--cCCce
Q 030120 79 RCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD---AAVSEALELHKI--KNRQW 153 (182)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~---~~~~~~~~~~~~--~~~~~ 153 (182)
..+++.+|++++|+|+.++. ......++..... .++|+++|+||+|+...... .++.+.+..... ....+
T Consensus 82 ~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~ 156 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF 156 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence 99999999999999998753 3455556665543 46899999999998643222 222222211111 22357
Q ss_pred EEEEecCCCCC----------CHHHHHHHHHHHHhcC
Q 030120 154 AIFKTCAIKGE----------GLFEGMDWLSNTLKSG 180 (182)
Q Consensus 154 ~~~~~Sa~~~~----------~v~~l~~~i~~~~~~~ 180 (182)
+++.+||++|. |+..+++.|.+.++..
T Consensus 157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred cEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 89999999996 7999999999988754
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.1e-21 Score=147.25 Aligned_cols=160 Identities=19% Similarity=0.216 Sum_probs=114.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc--CCcccc-------------ccccc----ceeeEEEECCEEEEEEECCCCCCCcc
Q 030120 16 KEARILVLGLDNAGKTTILYRLQM--GEVVST-------------IPTIG----FNVETVQYNNIKFQVWDLGGQTSIRP 76 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~--~~~~~~-------------~~t~~----~~~~~~~~~~~~~~~~D~~g~~~~~~ 76 (182)
+-.+|+++|+.++|||||+++|+. +.+... ..+.+ .....+.+++..+.+|||||+..+..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 456899999999999999999986 222221 01122 22344556889999999999999999
Q ss_pred chhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHH---HHHHHhCccc--ccCC
Q 030120 77 YWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDA---AVSEALELHK--IKNR 151 (182)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~---~~~~~~~~~~--~~~~ 151 (182)
.+..+++.+|++++|+|+.++... ....++..... .+.|.++++||+|+....... ++.+.+.... ....
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~ 158 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQL 158 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcccccc
Confidence 999999999999999999876432 33334444333 368899999999986543322 2222221111 1224
Q ss_pred ceEEEEecCCCCC----------CHHHHHHHHHHHHhcC
Q 030120 152 QWAIFKTCAIKGE----------GLFEGMDWLSNTLKSG 180 (182)
Q Consensus 152 ~~~~~~~Sa~~~~----------~v~~l~~~i~~~~~~~ 180 (182)
.++++.+||++|. ++..+++.|.+.++.+
T Consensus 159 ~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 159 DFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred CCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 5789999999998 5899999999988754
|
|
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-21 Score=149.80 Aligned_cols=143 Identities=22% Similarity=0.266 Sum_probs=99.7
Q ss_pred cCCCCCHHHHHHHHhcCCccc-cccccc--ceeeEEEECCEEEEEEECCCCCCCccc------hhhhc--CCCCeEEEEE
Q 030120 24 GLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNNIKFQVWDLGGQTSIRPY------WRCYF--PNTEAVIYVV 92 (182)
Q Consensus 24 G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~~d~ii~v~ 92 (182)
|++|+|||||+|++.+..... ..|+++ .....+.+++.++.+|||||+.++... ...++ ..+|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 899999999999999887533 445444 344556677888999999998876543 23333 4789999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 172 (182)
|+++.+. ...+..+..+ .+.|+++|+||+|+.+........+.+. +..+++++++||++|+|++++++.
T Consensus 81 Dat~ler---~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~----~~lg~pvv~tSA~tg~Gi~eL~~~ 149 (591)
T TIGR00437 81 DASNLER---NLYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLE----ERLGVPVVPTSATEGRGIERLKDA 149 (591)
T ss_pred cCCcchh---hHHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHH----HHcCCCEEEEECCCCCCHHHHHHH
Confidence 9987532 2223333322 4689999999999854322211111211 223467999999999999999999
Q ss_pred HHHHH
Q 030120 173 LSNTL 177 (182)
Q Consensus 173 i~~~~ 177 (182)
+.+..
T Consensus 150 i~~~~ 154 (591)
T TIGR00437 150 IRKAI 154 (591)
T ss_pred HHHHh
Confidence 98753
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-21 Score=132.84 Aligned_cols=146 Identities=19% Similarity=0.166 Sum_probs=93.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc----------------------------------ccccccceeeEEEECCEEEE
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS----------------------------------TIPTIGFNVETVQYNNIKFQ 64 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~----------------------------------~~~t~~~~~~~~~~~~~~~~ 64 (182)
+|+++|++|+|||||+++|+...-.. ...|.......+.+.+.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 58999999999999999997533110 11123333444556788999
Q ss_pred EEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH--HHHHHH
Q 030120 65 VWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD--AAVSEA 142 (182)
Q Consensus 65 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~ 142 (182)
+|||||++.+...+...++.+|++++|+|+.++..... .. ...+.... ...++++|+||+|+...... ..+...
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~-~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RR-HSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HH-HHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 99999998876666777899999999999987642221 11 12222221 12457889999998643211 122222
Q ss_pred hCcc--cccCCceEEEEecCCCCCCHHH
Q 030120 143 LELH--KIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 143 ~~~~--~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
+... .......+++++||++|.|+.+
T Consensus 157 ~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 157 YLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 2111 1112245799999999999864
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.6e-21 Score=142.16 Aligned_cols=164 Identities=16% Similarity=0.093 Sum_probs=103.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc------ccccccceeeEEE------------E------C--------CE
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS------TIPTIGFNVETVQ------------Y------N--------NI 61 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~------~~~t~~~~~~~~~------------~------~--------~~ 61 (182)
.+..++|+++|+.++|||||+.+|.+..... ...|......... + . ..
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 3567999999999999999999996532111 1112221111100 0 0 25
Q ss_pred EEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHH
Q 030120 62 KFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSE 141 (182)
Q Consensus 62 ~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~ 141 (182)
.+.+|||||++.+..........+|++++|+|+.++.........+.. +... ...|+++|+||+|+.+.....+..+
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~-l~~~--~i~~iiVVlNK~Dl~~~~~~~~~~~ 162 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMA-LDII--GIKNIVIVQNKIDLVSKERALENYE 162 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHH-HHHc--CCCcEEEEEEeeccccchhHHHHHH
Confidence 789999999988776666666778999999999975311122222222 2221 1247899999999975432211111
Q ss_pred HhCccc--ccCCceEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030120 142 ALELHK--IKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 142 ~~~~~~--~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
.+.... ......+++++||++|.|++++++.|.+.+++.
T Consensus 163 ~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~ 203 (411)
T PRK04000 163 QIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPTP 203 (411)
T ss_pred HHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCCC
Confidence 111111 012356899999999999999999999877643
|
|
| >KOG1673 consensus Ras GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-21 Score=122.15 Aligned_cols=167 Identities=19% Similarity=0.240 Sum_probs=128.1
Q ss_pred hhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeE--EEE--CCEEEEEEECCCCCCCccchhhhcCC
Q 030120 10 SSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET--VQY--NNIKFQVWDLGGQTSIRPYWRCYFPN 84 (182)
Q Consensus 10 ~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~ 84 (182)
++....-.++|.++|++..|||||+-.+.++.+.+ ...+.+.+... +.. ....+.+||..|++++..+.+-....
T Consensus 13 ~a~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~d 92 (205)
T KOG1673|consen 13 PAVSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKD 92 (205)
T ss_pred cccccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecC
Confidence 33455678899999999999999999999988865 66667765543 333 44677899999999999999999999
Q ss_pred CCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH--HHHHHHhCcccccCCceEEEEecCCC
Q 030120 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD--AAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
+-+++|+||++.+.+++...+|+.+..... ...--++|++|-|+.-.-.+ ++-....+...++-.+.+.+++|+.+
T Consensus 93 svaIlFmFDLt~r~TLnSi~~WY~QAr~~N--ktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~ 170 (205)
T KOG1673|consen 93 SVAILFMFDLTRRSTLNSIKEWYRQARGLN--KTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSH 170 (205)
T ss_pred cEEEEEEEecCchHHHHHHHHHHHHHhccC--CccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccc
Confidence 999999999999999999999999986543 23334679999998432222 11112222334455667899999999
Q ss_pred CCCHHHHHHHHHHHHh
Q 030120 163 GEGLFEGMDWLSNTLK 178 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~~ 178 (182)
..|++.+|..+..++-
T Consensus 171 sINv~KIFK~vlAklF 186 (205)
T KOG1673|consen 171 SINVQKIFKIVLAKLF 186 (205)
T ss_pred cccHHHHHHHHHHHHh
Confidence 9999999999887654
|
|
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=145.39 Aligned_cols=154 Identities=23% Similarity=0.215 Sum_probs=101.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcccccc-----cccceeeEEEE----------------CCEEEEEEECCCCCCCc
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVSTIP-----TIGFNVETVQY----------------NNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~-----t~~~~~~~~~~----------------~~~~~~~~D~~g~~~~~ 75 (182)
..-|+++|++++|||||++++.+..+....+ +.+........ ....+.+|||||++.+.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 3469999999999999999999887654221 22222111111 11248899999999999
Q ss_pred cchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--------------HHHHHH
Q 030120 76 PYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--------------DAAVSE 141 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--------------~~~~~~ 141 (182)
.++..+++.+|++++|+|++++...+.. ..+. .+.. .+.|+++++||+|+.+.-. ...+..
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~-e~i~-~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~ 158 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQ-EALN-ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQ 158 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHH-HHHH-HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHH
Confidence 9998899999999999999975332221 1111 2222 3689999999999963100 011100
Q ss_pred -----------HhCccc----------ccCCceEEEEecCCCCCCHHHHHHHHHH
Q 030120 142 -----------ALELHK----------IKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 142 -----------~~~~~~----------~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 175 (182)
.+.... ......+++++||++|+|+++++.++..
T Consensus 159 ~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~ 213 (590)
T TIGR00491 159 NLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAG 213 (590)
T ss_pred HHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence 011100 0123578999999999999999998864
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.9e-20 Score=115.63 Aligned_cols=163 Identities=23% Similarity=0.344 Sum_probs=129.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc---cccccc-ceeeEEEE---CCEEEEEEECCCCCCC-ccchhhhcCCCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIG-FNVETVQY---NNIKFQVWDLGGQTSI-RPYWRCYFPNTE 86 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~-~~~~~~~~---~~~~~~~~D~~g~~~~-~~~~~~~~~~~d 86 (182)
.+.-||+++|..++|||+++++++.++... ..||++ +....++- ....++++||.|.... ..+-.+|++-+|
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 456789999999999999999998776544 555665 33344433 3468899999997766 566678999999
Q ss_pred eEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030120 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
++++|++..+++||+.....-..+-+......+|+++.+||+|+.++ .++....+...++...+..+++++++...+
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p---~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL 163 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP---REVDMDVAQIWAKREKVKLWEVTAMDRPSL 163 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccc---hhcCHHHHHHHHhhhheeEEEEEeccchhh
Confidence 99999999999999888766666666555567999999999998643 455556666666777888999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 030120 167 FEGMDWLSNTLKSG 180 (182)
Q Consensus 167 ~~l~~~i~~~~~~~ 180 (182)
-+.|.++...+.+.
T Consensus 164 ~epf~~l~~rl~~p 177 (198)
T KOG3883|consen 164 YEPFTYLASRLHQP 177 (198)
T ss_pred hhHHHHHHHhccCC
Confidence 99999999877644
|
|
| >KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.2e-21 Score=123.60 Aligned_cols=159 Identities=19% Similarity=0.309 Sum_probs=134.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEE----CCEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
..++++++|..|.|||+++++.+.+.|.. +.+|.+.......+ ...++..|||+|++.+......++-+..+.|+
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 47899999999999999999999999988 88888877766655 33789999999999999988888888999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
+||++..-+......|..++.+... ++|+++++||.|..... .+..........++.++++||+++.|.+.-|
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~~--NiPiv~cGNKvDi~~r~-----~k~k~v~~~rkknl~y~~iSaksn~NfekPF 161 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVRE--NIPIVLCGNKVDIKARK-----VKAKPVSFHRKKNLQYYEISAKSNYNFERPF 161 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHhc--CCCeeeeccceeccccc-----cccccceeeecccceeEEeecccccccccch
Confidence 9999999999999999999988764 59999999999986542 1122223334567789999999999999999
Q ss_pred HHHHHHHhcCC
Q 030120 171 DWLSNTLKSGG 181 (182)
Q Consensus 171 ~~i~~~~~~~~ 181 (182)
-++.+++..++
T Consensus 162 l~LarKl~G~p 172 (216)
T KOG0096|consen 162 LWLARKLTGDP 172 (216)
T ss_pred HHHhhhhcCCC
Confidence 99999876543
|
|
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=146.30 Aligned_cols=155 Identities=19% Similarity=0.129 Sum_probs=104.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc---cc---ccccccceeeEEEE-CCEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEV---VS---TIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~---~~---~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
-|+++|+.++|||||+++|.+.+. .. ...|++.....+.. ++..+.+|||||++.+.......+..+|++++|
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLV 81 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV 81 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEE
Confidence 478999999999999999986432 11 23343333333333 456789999999999877777788999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCCCCCHHHHHHHhCccc--ccCCceEEEEecCCCCCCHHH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGALDDAAVSEALELHK--IKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
+|++++.. ....+.+ .++.. .+.| +++|+||+|+.+......+...+.... ......+++++||++|.|+++
T Consensus 82 Vda~eg~~-~qT~ehl-~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 82 VACDDGVM-AQTREHL-AILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred EECCCCCc-HHHHHHH-HHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence 99987532 2222222 23332 2344 689999999965322222222222111 112346799999999999999
Q ss_pred HHHHHHHHHh
Q 030120 169 GMDWLSNTLK 178 (182)
Q Consensus 169 l~~~i~~~~~ 178 (182)
+++.|.+...
T Consensus 157 L~~~L~~~~~ 166 (614)
T PRK10512 157 LREHLLQLPE 166 (614)
T ss_pred HHHHHHHhhc
Confidence 9999987544
|
|
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-20 Score=128.19 Aligned_cols=152 Identities=22% Similarity=0.221 Sum_probs=98.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc-cc----------------cc-------ccce-----------------eeEEE
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS-TI----------------PT-------IGFN-----------------VETVQ 57 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~-~~----------------~t-------~~~~-----------------~~~~~ 57 (182)
|++++|+.++|||||++++..+.+.. .. .| .+++ ...+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58999999999999999998654322 00 00 1111 02233
Q ss_pred ECCEEEEEEECCCCCCCccchhhhcC--CCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC
Q 030120 58 YNNIKFQVWDLGGQTSIRPYWRCYFP--NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD 135 (182)
Q Consensus 58 ~~~~~~~~~D~~g~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~ 135 (182)
..+..+.++||||++.+.......+. .+|++++|+|+..+.. .....+..++.. .++|+++|+||+|+.+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~--~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~ 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII--GMTKEHLGLALA---LNIPVFVVVTKIDLAPANI 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc--HHHHHHHHHHHH---cCCCEEEEEECccccCHHH
Confidence 45678999999999988766555554 6899999999987643 222222223332 4689999999999865432
Q ss_pred HHHHHH----HhCcc---------------------cccCCceEEEEecCCCCCCHHHHHHHHHH
Q 030120 136 DAAVSE----ALELH---------------------KIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 136 ~~~~~~----~~~~~---------------------~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 175 (182)
..+... .+... .......++|.+||.+|.|++++...|..
T Consensus 156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 222222 22210 01123458999999999999998877643
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-20 Score=124.01 Aligned_cols=153 Identities=23% Similarity=0.204 Sum_probs=96.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee--EEEECCEEEEEEECCCCCCC----------ccchhhhcC--
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQYNNIKFQVWDLGGQTSI----------RPYWRCYFP-- 83 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~~~~~~~~~D~~g~~~~----------~~~~~~~~~-- 83 (182)
.|+++|.+|+|||||++.+.+..... ..++.+.... .+... ..+.+|||||.... ......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR 79 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence 37999999999999999999655444 4444333222 22223 38999999995442 222233333
Q ss_pred -CCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccc-cCCceEEEEecCC
Q 030120 84 -NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI-KNRQWAIFKTCAI 161 (182)
Q Consensus 84 -~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~ 161 (182)
..+++++++|.....+... ..+...+.. .+.|+++++||+|+.................. .....+++++||+
T Consensus 80 ~~~~~~~~v~d~~~~~~~~~--~~~~~~l~~---~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~ 154 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTEID--LEMLDWLEE---LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSL 154 (170)
T ss_pred hhhhEEEEEEEcCcCCCHhH--HHHHHHHHH---cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecC
Confidence 4578999999986632211 112222222 25799999999998644333222222221111 2345679999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 030120 162 KGEGLFEGMDWLSNTL 177 (182)
Q Consensus 162 ~~~~v~~l~~~i~~~~ 177 (182)
++.+++++++.|.+.+
T Consensus 155 ~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 155 KGQGIDELRALIEKWL 170 (170)
T ss_pred CCCCHHHHHHHHHHhC
Confidence 9999999999998753
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.7e-21 Score=131.29 Aligned_cols=161 Identities=20% Similarity=0.178 Sum_probs=107.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcccccc----cccceeeEEEECCEEEEEEECCCCCCC------------ccc
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVSTIP----TIGFNVETVQYNNIKFQVWDLGGQTSI------------RPY 77 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~------------~~~ 77 (182)
..+.++|+++|.||+|||||.|.+.+.++..... |.......+.-....+.++||||.-.- ...
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 3678899999999999999999999999776322 333455566668899999999993211 112
Q ss_pred hhhhcCCCCeEEEEEeCCCccc--HHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH-----------------HH
Q 030120 78 WRCYFPNTEAVIYVVDSSDTDR--IQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-----------------AA 138 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-----------------~~ 138 (182)
....+.++|++++++|+++... -......+..+ .++|-++|+||+|....... .+
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~ 222 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLE 222 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH------hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhh
Confidence 2345678999999999996432 12222222222 35788999999998643110 11
Q ss_pred HHHHhCccc-----cc----CCceEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030120 139 VSEALELHK-----IK----NRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 139 ~~~~~~~~~-----~~----~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
+.+...... .. .....+|.+||++|+|++++-++|....++.
T Consensus 223 v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~g 273 (379)
T KOG1423|consen 223 VQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPG 273 (379)
T ss_pred HHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCC
Confidence 111111110 00 1133599999999999999999999877654
|
|
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-20 Score=138.64 Aligned_cols=162 Identities=18% Similarity=0.159 Sum_probs=105.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCc----------c--c-------ccccccceeeEEEECCEEEEEEECCCCCCC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEV----------V--S-------TIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~----------~--~-------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (182)
..+.++|+++|+.++|||||+++|++... . . ...|.+.....+..++..+.++||||++.+
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 46689999999999999999999976310 0 0 111222222223235678999999999988
Q ss_pred ccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCCCCCH-H----HHHHHhCcccc
Q 030120 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGALDD-A----AVSEALELHKI 148 (182)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~-~----~~~~~~~~~~~ 148 (182)
..........+|++++|+|+.++.. ....+.+..+ .. .++| +++++||+|+.+.... + ++...+.....
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~-~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 163 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPM-PQTREHILLA-RQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHH-HH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence 7777777788999999999987632 2223333332 22 3566 6789999998643221 1 22222222222
Q ss_pred cCCceEEEEecCCCCC--------CHHHHHHHHHHHHhcC
Q 030120 149 KNRQWAIFKTCAIKGE--------GLFEGMDWLSNTLKSG 180 (182)
Q Consensus 149 ~~~~~~~~~~Sa~~~~--------~v~~l~~~i~~~~~~~ 180 (182)
.....+++++||++|. ++.++++.+.+.++..
T Consensus 164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~ 203 (394)
T PRK12736 164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTP 203 (394)
T ss_pred CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCC
Confidence 2234689999999983 6789999988877643
|
|
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-20 Score=129.48 Aligned_cols=146 Identities=16% Similarity=0.172 Sum_probs=94.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc---------------------------cc-------ccccccceeeEEEECCEEEE
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEV---------------------------VS-------TIPTIGFNVETVQYNNIKFQ 64 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~---------------------------~~-------~~~t~~~~~~~~~~~~~~~~ 64 (182)
+|+++|++++|||||+.+|+...- .. ...|.+.....+.+.+.++.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 589999999999999999963210 00 11133344455666889999
Q ss_pred EEECCCCCCCccchhhhcCCCCeEEEEEeCCCccc------HHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC-C--
Q 030120 65 VWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR------IQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-D-- 135 (182)
Q Consensus 65 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-~-- 135 (182)
+|||||+..+...+...++.+|++++|+|+.++.. .......+. ..... ...|+++++||+|+.... .
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LARTL--GVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHHc--CCCeEEEEEEccccccccccHH
Confidence 99999998777667777888999999999988521 111222222 22221 236899999999997321 1
Q ss_pred -HHHHHHHh----CcccccCCceEEEEecCCCCCCHH
Q 030120 136 -DAAVSEAL----ELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 136 -~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
...+...+ .........++++++||++|.|++
T Consensus 158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 12222222 111122235889999999999886
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.8e-20 Score=125.28 Aligned_cols=158 Identities=15% Similarity=0.128 Sum_probs=98.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc-----eeeEEEE-CCEEEEEEECCCCCCCccchhhh-----cCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF-----NVETVQY-NNIKFQVWDLGGQTSIRPYWRCY-----FPN 84 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-----~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~-----~~~ 84 (182)
+++|+++|++|+|||||+|++.+..... ..++.+. ....+.. ....+.+|||||..........+ +..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 4689999999999999999999865433 1121121 1111111 13478999999976543333233 567
Q ss_pred CCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC---------HHHHHHHhCcccc------c
Q 030120 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD---------DAAVSEALELHKI------K 149 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~---------~~~~~~~~~~~~~------~ 149 (182)
+|+++++.+. ++......+...+.. .+.|+++|+||+|+..... ..++.+.+..... .
T Consensus 81 ~d~~l~v~~~----~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 81 YDFFIIISST----RFSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred cCEEEEEeCC----CCCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 8998888532 234444444444443 2579999999999943211 1222222211111 1
Q ss_pred CCceEEEEecCC--CCCCHHHHHHHHHHHHhcCC
Q 030120 150 NRQWAIFKTCAI--KGEGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 150 ~~~~~~~~~Sa~--~~~~v~~l~~~i~~~~~~~~ 181 (182)
....++|.+|+. .++++..+.+.|...+++.+
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence 233479999999 67999999999999998764
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-19 Score=127.10 Aligned_cols=111 Identities=17% Similarity=0.240 Sum_probs=79.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC--ccc---------------c--------cccccceeeEEEECCEEEEEEECCCCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGE--VVS---------------T--------IPTIGFNVETVQYNNIKFQVWDLGGQT 72 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~--~~~---------------~--------~~t~~~~~~~~~~~~~~~~~~D~~g~~ 72 (182)
.+|+++|++|+|||||+++++... ... + ..+.......+.+.+.++.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 579999999999999999997421 110 0 011123334567789999999999999
Q ss_pred CCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 73 SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
++.......++.+|++++|+|+.++... ....++.. ... .+.|+++++||+|+...
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~-~~~---~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEV-CRL---RGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHH-HHh---cCCCEEEEEECCccCCC
Confidence 8877777788999999999999876432 22233322 222 46899999999998543
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.9e-21 Score=119.80 Aligned_cols=162 Identities=35% Similarity=0.599 Sum_probs=137.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
.+.-|++++|--|+|||||++.|.........||..+..+.+...+.++.-+|.+||..-+..|..++..+|++++.+|+
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda 97 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDA 97 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeeh
Confidence 67789999999999999999999888887888999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCccc------------ccCCceEEEEecCCC
Q 030120 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHK------------IKNRQWAIFKTCAIK 162 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~ 162 (182)
.+.+++...+..+..++......+.|+++.+||+|.+.....++......... .......+|.||...
T Consensus 98 ~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~ 177 (193)
T KOG0077|consen 98 YDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVR 177 (193)
T ss_pred hhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEc
Confidence 99999999998888887766667899999999999988777666665443211 123456788899988
Q ss_pred CCCHHHHHHHHHHH
Q 030120 163 GEGLFEGMDWLSNT 176 (182)
Q Consensus 163 ~~~v~~l~~~i~~~ 176 (182)
+.+.-+.|.++...
T Consensus 178 ~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 178 KMGYGEGFKWLSQY 191 (193)
T ss_pred cCccceeeeehhhh
Confidence 88877777776543
|
|
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-19 Score=127.70 Aligned_cols=109 Identities=18% Similarity=0.173 Sum_probs=80.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC--cc-------------------cccccccceeeEEEECCEEEEEEECCCCCCCccc
Q 030120 19 RILVLGLDNAGKTTILYRLQMGE--VV-------------------STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~--~~-------------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 77 (182)
+|+++|++|+|||||+++++... .. ....|+......+.+.+..+.+|||||+..+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 58999999999999999996311 00 0111333445666778999999999999988888
Q ss_pred hhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030120 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
+..+++.+|++++|+|+.++.... ....+... .. .++|+++++||+|+..
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~-~~---~~~p~ivviNK~D~~~ 130 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQA-DR---YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHH-HH---cCCCEEEEEECCCCCC
Confidence 888999999999999998764322 22333322 22 4689999999999864
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.5e-20 Score=136.87 Aligned_cols=159 Identities=19% Similarity=0.184 Sum_probs=103.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC-------Cc---cc-------ccc--cccceeeEEEECCEEEEEEECCCCCCCc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG-------EV---VS-------TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~-------~~---~~-------~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 75 (182)
...++++++|++++|||||+++|++. .+ .. ... |.......+..++..+.++||||++.+.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 56789999999999999999999862 11 00 011 2222222233356789999999998887
Q ss_pred cchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEE-EEEeCCCCCCCCCH-H----HHHHHhCccccc
Q 030120 76 PYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVAL-IFANKQDLPGALDD-A----AVSEALELHKIK 149 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ii-vv~nK~D~~~~~~~-~----~~~~~~~~~~~~ 149 (182)
......+..+|++++|+|+.++.. ....+.+..+ .. .++|.+ +++||+|+.+.... + ++...+......
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~-~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~ 164 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPM-PQTREHILLA-RQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHH-HH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence 777777889999999999987532 2222333322 22 356755 68999999643221 1 222222211111
Q ss_pred CCceEEEEecCCCCC----------CHHHHHHHHHHHHh
Q 030120 150 NRQWAIFKTCAIKGE----------GLFEGMDWLSNTLK 178 (182)
Q Consensus 150 ~~~~~~~~~Sa~~~~----------~v~~l~~~i~~~~~ 178 (182)
....+++++||++|. ++..+++.|...++
T Consensus 165 ~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 165 GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 235789999999984 67888888887665
|
|
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.6e-20 Score=116.54 Aligned_cols=135 Identities=23% Similarity=0.316 Sum_probs=90.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCC----CCccchhhhcCCCCeEEEEEeC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQT----SIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
|++++|+.|+|||||+++|.+.+... ..|..+. +.+ .++||||.- .+..........+|.++++.|+
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~-~KTq~i~-----~~~---~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~da 73 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRY-KKTQAIE-----YYD---NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDA 73 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCc-CccceeE-----ecc---cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecC
Confidence 79999999999999999998866432 2222222 211 349999943 3333344455789999999999
Q ss_pred CCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC-CCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHH
Q 030120 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG-ALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWL 173 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 173 (182)
+++.+ .....+... .+.|+|=|+||+|+.. ....+.....+...... .+|++|+.+|+|+++|.++|
T Consensus 74 t~~~~--~~pP~fa~~------f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~----~if~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 74 TEPRS--VFPPGFASM------FNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK----EIFEVSAVTGEGIEELKDYL 141 (143)
T ss_pred CCCCc--cCCchhhcc------cCCCEEEEEECccCccchhhHHHHHHHHHHcCCC----CeEEEECCCCcCHHHHHHHH
Confidence 98743 112122222 3579999999999973 22333333344332222 37999999999999999987
Q ss_pred H
Q 030120 174 S 174 (182)
Q Consensus 174 ~ 174 (182)
-
T Consensus 142 ~ 142 (143)
T PF10662_consen 142 E 142 (143)
T ss_pred h
Confidence 4
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.7e-19 Score=127.09 Aligned_cols=110 Identities=22% Similarity=0.260 Sum_probs=80.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc---------------------ccccccceeeEEEECCEEEEEEECCCCCCCccc
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS---------------------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~---------------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 77 (182)
+|+++|++|+|||||+++++...-.. ...+.......+.+.+.++.+|||||+..+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 58999999999999999997532110 011233344556678899999999999887777
Q ss_pred hhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
+..++..+|++++|+|++++..... ...+... . ..+.|.++++||+|+...
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~-~~~~~~~-~---~~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGT-EKLWEFA-D---EAGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHH-HHHHHHH-H---HcCCCEEEEEECCccCCC
Confidence 8888999999999999998754332 2222222 2 246899999999998643
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-19 Score=138.47 Aligned_cols=156 Identities=21% Similarity=0.192 Sum_probs=100.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccccc-----cccceeeEEEE----------------CCEEEEEEECCCCCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIP-----TIGFNVETVQY----------------NNIKFQVWDLGGQTS 73 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~-----t~~~~~~~~~~----------------~~~~~~~~D~~g~~~ 73 (182)
.+...|+++|++|+|||||++++.+.......+ +.+........ ....+.+|||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 345679999999999999999998766543222 22222111111 001278999999999
Q ss_pred CccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--------------HHH-
Q 030120 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--------------DAA- 138 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--------------~~~- 138 (182)
+..++...+..+|++++|+|++++... .....+. .+.. .+.|+++++||+|+...-. ...
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~-qt~e~i~-~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v 158 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQP-QTIEAIN-ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRV 158 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCH-hHHHHHH-HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHH
Confidence 998888888999999999999974221 1111222 2222 4689999999999852100 000
Q ss_pred ----------HHHHhCcccc----------cCCceEEEEecCCCCCCHHHHHHHHHH
Q 030120 139 ----------VSEALELHKI----------KNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 139 ----------~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 175 (182)
+...+..... .....+++++||++|+|++++++.+..
T Consensus 159 ~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 159 QQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 1111111110 123578999999999999999988764
|
|
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-19 Score=135.64 Aligned_cols=160 Identities=19% Similarity=0.181 Sum_probs=103.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-----------------ccc--cccceeeEEEECCEEEEEEECCCCCCC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-----------------TIP--TIGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-----------------~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (182)
....++++++|++++|||||+++|++..-.. ... |.......+..++..+.++||||+..+
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 4667999999999999999999998642100 001 222222233346778999999999888
Q ss_pred ccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCCCCCH-H----HHHHHhCcccc
Q 030120 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGALDD-A----AVSEALELHKI 148 (182)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~-~----~~~~~~~~~~~ 148 (182)
.......+..+|++++|+|+..+.. ......+..+ .. .+.| +++++||+|+.+.... + ++...+.....
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~-~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~ 163 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLA-KQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF 163 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 7777777889999999999987632 2233333322 22 3567 7789999999653221 1 22222222111
Q ss_pred cCCceEEEEecCCCCCC------------------HHHHHHHHHHHHh
Q 030120 149 KNRQWAIFKTCAIKGEG------------------LFEGMDWLSNTLK 178 (182)
Q Consensus 149 ~~~~~~~~~~Sa~~~~~------------------v~~l~~~i~~~~~ 178 (182)
.....+++++||.+|.| +..+++.|.+.++
T Consensus 164 ~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~ 211 (409)
T CHL00071 164 PGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIP 211 (409)
T ss_pred CCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCC
Confidence 22347899999999863 4567777666543
|
|
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-19 Score=138.39 Aligned_cols=149 Identities=24% Similarity=0.283 Sum_probs=108.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc-cccc--cccceeeEEEECCEEEEEEECCCCCCCccc------hhhhc--CC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVV-STIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPY------WRCYF--PN 84 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~ 84 (182)
+..+++++|+||+|||||+|++.|.+.. ..+| |.+.....+.+.+.+++++|+||...+... ..+++ .+
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 3567999999999999999999987743 3666 444555667778889999999996544322 23333 45
Q ss_pred CCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC----HHHHHHHhCcccccCCceEEEEecC
Q 030120 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD----DAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
+|+++.|+|+++-++.-. ...++++ .+.|+++++|++|..+... .+++. +..++|++++||
T Consensus 82 ~D~ivnVvDAtnLeRnLy---ltlQLlE----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~--------~~LGvPVv~tvA 146 (653)
T COG0370 82 PDLIVNVVDATNLERNLY---LTLQLLE----LGIPMILALNMIDEAKKRGIRIDIEKLS--------KLLGVPVVPTVA 146 (653)
T ss_pred CCEEEEEcccchHHHHHH---HHHHHHH----cCCCeEEEeccHhhHHhcCCcccHHHHH--------HHhCCCEEEEEe
Confidence 799999999998754222 2233333 3789999999999854422 22322 345678999999
Q ss_pred CCCCCHHHHHHHHHHHHhc
Q 030120 161 IKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 161 ~~~~~v~~l~~~i~~~~~~ 179 (182)
++|+|++++.+.+.+...+
T Consensus 147 ~~g~G~~~l~~~i~~~~~~ 165 (653)
T COG0370 147 KRGEGLEELKRAIIELAES 165 (653)
T ss_pred ecCCCHHHHHHHHHHhccc
Confidence 9999999999999875443
|
|
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7e-19 Score=123.41 Aligned_cols=162 Identities=19% Similarity=0.179 Sum_probs=114.0
Q ss_pred Hhhhhc--CCCccEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECCEEEEEEECCCCCCC--------
Q 030120 8 MFSSLF--GNKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSI-------- 74 (182)
Q Consensus 8 ~~~~~~--~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~-------- 74 (182)
.++..+ ......++|.|.||+|||||++.+.+.+..- ..+|.+++...+.....+++++||||.-+.
T Consensus 157 ~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~I 236 (346)
T COG1084 157 HLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEI 236 (346)
T ss_pred HHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHH
Confidence 344444 3578899999999999999999999877543 455677899999999999999999993221
Q ss_pred ccch-hhhcCCCCeEEEEEeCCC--cccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCC
Q 030120 75 RPYW-RCYFPNTEAVIYVVDSSD--TDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNR 151 (182)
Q Consensus 75 ~~~~-~~~~~~~d~ii~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 151 (182)
.... ...-.-.++|+|+||++. +.+.+.+...+..+... .+.|+++|+||+|..+....++....+.. ..
T Consensus 237 E~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~~~~----~~ 309 (346)
T COG1084 237 ERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEASVLE----EG 309 (346)
T ss_pred HHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHHHHh----hc
Confidence 1111 111233589999999975 45778888888777544 34899999999999765444444433322 12
Q ss_pred ceEEEEecCCCCCCHHHHHHHHHHH
Q 030120 152 QWAIFKTCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 152 ~~~~~~~Sa~~~~~v~~l~~~i~~~ 176 (182)
......+++..+.+++.+-..+...
T Consensus 310 ~~~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 310 GEEPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred cccccceeeeehhhHHHHHHHHHHH
Confidence 2235677778888877766665554
|
|
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-19 Score=133.83 Aligned_cols=159 Identities=19% Similarity=0.171 Sum_probs=99.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC-------c-----c-----c--ccccccceeeEEEECCEEEEEEECCCCCCC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGE-------V-----V-----S--TIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~-------~-----~-----~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (182)
..+.++|+++|+.++|||||+++|++.. . . + ...|.+.....+...+..+.+|||||++.+
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 4678999999999999999999997421 0 0 0 111222222233335678999999999988
Q ss_pred ccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeE-EEEEeCCCCCCCCCH-H----HHHHHhCcccc
Q 030120 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVA-LIFANKQDLPGALDD-A----AVSEALELHKI 148 (182)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i-ivv~nK~D~~~~~~~-~----~~~~~~~~~~~ 148 (182)
..........+|++++|+|+.++.. ....+.+..+ .. .+.|. ++++||+|+.+.... + ++...+.....
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~-~qt~e~l~~~-~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~ 163 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPM-PQTREHILLA-RQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 7766667788999999999987532 2223333333 22 24554 578999998653221 1 22222222211
Q ss_pred cCCceEEEEecCCCCC--------CHHHHHHHHHHHH
Q 030120 149 KNRQWAIFKTCAIKGE--------GLFEGMDWLSNTL 177 (182)
Q Consensus 149 ~~~~~~~~~~Sa~~~~--------~v~~l~~~i~~~~ 177 (182)
....++++++||++|. ++..+++.+.+.+
T Consensus 164 ~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~ 200 (394)
T TIGR00485 164 PGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYI 200 (394)
T ss_pred CccCccEEECccccccccCCchhHhHHHHHHHHHhcC
Confidence 2234789999999875 3455666655544
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-19 Score=123.74 Aligned_cols=156 Identities=15% Similarity=0.082 Sum_probs=99.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccc------------cc----------cccceeeEEEE-----CCEEEEEEECCCC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVST------------IP----------TIGFNVETVQY-----NNIKFQVWDLGGQ 71 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~~------------~~----------t~~~~~~~~~~-----~~~~~~~~D~~g~ 71 (182)
+|+++|+.|+|||||+++|+....... .. +.......+.+ ....+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999986442210 00 11111112222 2478899999999
Q ss_pred CCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC-------CCHHHHHH---
Q 030120 72 TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA-------LDDAAVSE--- 141 (182)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~-------~~~~~~~~--- 141 (182)
..+......++..+|++++|+|+.+..+... ..++..... .+.|+++|+||+|+... .....+.+
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~ 156 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRLILELKLPPNDAYFKLRHIID 156 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccCcccccCCHHHHHHHHHHHHH
Confidence 9998888888999999999999988765432 233333322 35899999999998521 01111111
Q ss_pred ----HhCcccc------cCCceEEEEecCCCCCCHH--------HHHHHHHHHHhc
Q 030120 142 ----ALELHKI------KNRQWAIFKTCAIKGEGLF--------EGMDWLSNTLKS 179 (182)
Q Consensus 142 ----~~~~~~~------~~~~~~~~~~Sa~~~~~v~--------~l~~~i~~~~~~ 179 (182)
....... ......+++.|++.++++. ++++.|.+.++.
T Consensus 157 ~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 212 (213)
T cd04167 157 EVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNIPS 212 (213)
T ss_pred HHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhCCC
Confidence 1111111 0112337789999997765 777777776553
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.4e-19 Score=124.23 Aligned_cols=155 Identities=26% Similarity=0.315 Sum_probs=107.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECC-EEEEEEECCCCC-------CCccchhhhcCCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNN-IKFQVWDLGGQT-------SIRPYWRCYFPNT 85 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~-~~~~~~D~~g~~-------~~~~~~~~~~~~~ 85 (182)
...++++|-||+|||||++++...+..- ..+|..+....+.+++ ..+.+-|.||.- .+.......++++
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhh
Confidence 3468899999999999999998876432 4445556666666644 449999999932 2233345556889
Q ss_pred CeEEEEEeCCCc---ccHHHHHHHHHHHH-hccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCC
Q 030120 86 EAVIYVVDSSDT---DRIQTAKEEFHAIL-EEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 86 d~ii~v~d~~~~---~s~~~~~~~~~~~~-~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
+..+||+|++.+ ...++....+.++- ......+.|.++|+||+|+.+. ++.....+... ..+..++++||+
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea--e~~~l~~L~~~---lq~~~V~pvsA~ 350 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA--EKNLLSSLAKR---LQNPHVVPVSAK 350 (366)
T ss_pred ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH--HHHHHHHHHHH---cCCCcEEEeeec
Confidence 999999999988 55555554444442 2334467899999999998632 22222222211 112259999999
Q ss_pred CCCCHHHHHHHHHHH
Q 030120 162 KGEGLFEGMDWLSNT 176 (182)
Q Consensus 162 ~~~~v~~l~~~i~~~ 176 (182)
.++++.++++.|.+.
T Consensus 351 ~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 351 SGEGLEELLNGLREL 365 (366)
T ss_pred cccchHHHHHHHhhc
Confidence 999999999988653
|
|
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-19 Score=122.62 Aligned_cols=108 Identities=17% Similarity=0.163 Sum_probs=77.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCc--cc-----------------ccccccceeeEEEEC----------CEEEEEEECC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEV--VS-----------------TIPTIGFNVETVQYN----------NIKFQVWDLG 69 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~--~~-----------------~~~t~~~~~~~~~~~----------~~~~~~~D~~ 69 (182)
+|+++|+.++|||||+.+|+...- .. ...|+......+.+. ...+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 699999999999999999975321 10 001222222223332 6788999999
Q ss_pred CCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q 030120 70 GQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 131 (182)
|++.+......+++.+|++++|+|+.++...+. ...+..... .+.|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence 999999999999999999999999998765433 223333322 357999999999985
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=6e-19 Score=131.28 Aligned_cols=159 Identities=18% Similarity=0.157 Sum_probs=103.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-------------------cccccccceeeEEEECCEEEEEEECCCCCCCc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVV-------------------STIPTIGFNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~-------------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 75 (182)
...++|+++|+.++|||||+++|++.... ....|.......+..++..+.++||||+..+.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 66889999999999999999999863110 01112222222233366789999999998887
Q ss_pred cchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEE-EEEeCCCCCCCCC-HH----HHHHHhCccccc
Q 030120 76 PYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVAL-IFANKQDLPGALD-DA----AVSEALELHKIK 149 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ii-vv~nK~D~~~~~~-~~----~~~~~~~~~~~~ 149 (182)
......+..+|++++|+|+..+.. ......+..+ .. .+.|.+ +++||+|+.+... .+ ++...+......
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~-~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~ 164 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPM-PQTREHILLA-RQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHH-HH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence 777777899999999999987632 2222333222 22 357765 6899999964211 11 222222211112
Q ss_pred CCceEEEEecCCCCC----------CHHHHHHHHHHHHh
Q 030120 150 NRQWAIFKTCAIKGE----------GLFEGMDWLSNTLK 178 (182)
Q Consensus 150 ~~~~~~~~~Sa~~~~----------~v~~l~~~i~~~~~ 178 (182)
....+++++||+++. ++..+++.|.+.++
T Consensus 165 ~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 165 GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 245789999999875 56788888887654
|
|
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.2e-19 Score=133.19 Aligned_cols=146 Identities=21% Similarity=0.168 Sum_probs=97.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCc------c-----------c--ccccccceeeEEEECCEEEEEEECCCCCCC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEV------V-----------S--TIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~------~-----------~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (182)
....++++++|++++|||||+++|++... . + ...|.+.....+..++..+.++||||++.+
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 46688999999999999999999985211 0 0 111222223334457789999999999998
Q ss_pred ccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCCCCC-HH----HHHHHhCcccc
Q 030120 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGALD-DA----AVSEALELHKI 148 (182)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~-~~----~~~~~~~~~~~ 148 (182)
.......+..+|++++|+|+.++.. ....+++... .. .++| +++++||+|+.+... .+ ++...+.....
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~-~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLA-KQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF 232 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 8777778889999999999987743 2333344333 22 3566 788999999965321 12 22222222212
Q ss_pred cCCceEEEEecCCCCC
Q 030120 149 KNRQWAIFKTCAIKGE 164 (182)
Q Consensus 149 ~~~~~~~~~~Sa~~~~ 164 (182)
.....+++++|+.++.
T Consensus 233 ~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 233 PGDDIPIISGSALLAL 248 (478)
T ss_pred CcCcceEEEEEccccc
Confidence 2346889999998874
|
|
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.1e-19 Score=121.51 Aligned_cols=160 Identities=21% Similarity=0.293 Sum_probs=103.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc----ccccccceeeEEEE-CCEEEEEEECCCCCCCcc-----chhhhcCCCCeE
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRP-----YWRCYFPNTEAV 88 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~-----~~~~~~~~~d~i 88 (182)
||+++|+.++||||+.+.++.+..+. ..+|..+....+.. ....+.+||+||+..+.. .....+++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 79999999999999999999876554 45677777777765 667999999999976544 357788999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhc--cccCCCeEEEEEeCCCCCCCCCHHHHHHHhC----cccc--cCCceEEEEecC
Q 030120 89 IYVVDSSDTDRIQTAKEEFHAILEE--EELKGAVALIFANKQDLPGALDDAAVSEALE----LHKI--KNRQWAIFKTCA 160 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~Sa 160 (182)
|||+|+.+.+ +......+...+.. ..+++..+.+.++|+|+..+....++..... .... ....+.++.||-
T Consensus 81 IyV~D~qs~~-~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI 159 (232)
T PF04670_consen 81 IYVFDAQSDD-YDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI 159 (232)
T ss_dssp EEEEETT-ST-CHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred EEEEEccccc-HHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence 9999998544 33344444444332 2347899999999999975433322222111 1111 112488999998
Q ss_pred CCCCCHHHHHHHHHHHHhcC
Q 030120 161 IKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 161 ~~~~~v~~l~~~i~~~~~~~ 180 (182)
-+ ..+.+.|..+++.+.++
T Consensus 160 ~D-~Sly~A~S~Ivq~LiP~ 178 (232)
T PF04670_consen 160 WD-ESLYEAWSKIVQKLIPN 178 (232)
T ss_dssp TS-THHHHHHHHHHHTTSTT
T ss_pred cC-cHHHHHHHHHHHHHccc
Confidence 77 46999999998876543
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-18 Score=137.35 Aligned_cols=115 Identities=23% Similarity=0.181 Sum_probs=87.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCc--------------c-------cccccccceeeEEEECCEEEEEEECCCCC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEV--------------V-------STIPTIGFNVETVQYNNIKFQVWDLGGQT 72 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~--------------~-------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 72 (182)
.++..+|+|+|+.|+|||||+++|+...- . ....|+......+.+.+..+.+|||||+.
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~ 84 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI 84 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH
Confidence 45678999999999999999999974320 0 02224445556677789999999999999
Q ss_pred CCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 73 SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
.+...+..+++.+|++++|+|++++....... .+.... . .++|+++++||+|+...
T Consensus 85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~-~~~~~~-~---~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTET-VWRQAD-R---YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHH-h---cCCCEEEEEECCCCCCC
Confidence 98888899999999999999999876554333 333322 2 36899999999998754
|
|
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-18 Score=129.50 Aligned_cols=161 Identities=17% Similarity=0.176 Sum_probs=102.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC------Ccc-----------c--ccccccceeeEEEECCEEEEEEECCCCCCC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMG------EVV-----------S--TIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~------~~~-----------~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (182)
....++|+++|+.++|||||+++|.+. ... + ...|.+.....++.++..+.++||||+..+
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 467889999999999999999999622 100 0 111223333333346678999999999988
Q ss_pred ccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCCCCCH-HHHHHHh----Ccccc
Q 030120 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGALDD-AAVSEAL----ELHKI 148 (182)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~-~~~~~~~----~~~~~ 148 (182)
..........+|++++|+|+.++.. ....+.+. ++.. .+.| +++++||+|+.+.... +.+...+ .....
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~-~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~ 212 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPM-PQTKEHIL-LARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF 212 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHH-HHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 7766667778999999999987632 22222222 2222 3577 5789999999643211 1121111 11111
Q ss_pred cCCceEEEEecCC---CCCC-------HHHHHHHHHHHHhc
Q 030120 149 KNRQWAIFKTCAI---KGEG-------LFEGMDWLSNTLKS 179 (182)
Q Consensus 149 ~~~~~~~~~~Sa~---~~~~-------v~~l~~~i~~~~~~ 179 (182)
.....+++++|+. ++.| +.++++.+.+.++.
T Consensus 213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~ 253 (447)
T PLN03127 213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPE 253 (447)
T ss_pred CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCC
Confidence 2235788998886 4444 78888888887653
|
|
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-18 Score=131.60 Aligned_cols=114 Identities=18% Similarity=0.261 Sum_probs=82.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc--CCccc-----------------------ccccccceeeEEEECCEEEEEEECC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQM--GEVVS-----------------------TIPTIGFNVETVQYNNIKFQVWDLG 69 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~--~~~~~-----------------------~~~t~~~~~~~~~~~~~~~~~~D~~ 69 (182)
.+..+|+|+|++++|||||+++|+. +.... ...++......+.+++..+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 4677999999999999999999963 11100 0001122334566788999999999
Q ss_pred CCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 70 GQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
|+..+......+++.+|++++|+|+.++... ....++... ...+.|+++++||+|+...
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~----~~~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVC----RLRDTPIFTFINKLDRDGR 146 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHH----HhcCCCEEEEEECCccccc
Confidence 9998888777888999999999999876422 223333322 2247899999999998653
|
|
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-18 Score=128.69 Aligned_cols=154 Identities=19% Similarity=0.183 Sum_probs=112.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccccc---cccceeeEEEE---CCEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIP---TIGFNVETVQY---NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~---t~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
+..=|+++|+..+|||||+..+-+.......+ |..+.-..+.. ....+.++|||||+.|..+......-+|+++
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 45568999999999999999997777655222 33344344444 3468999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCccccc----CCceEEEEecCCCCCC
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIK----NRQWAIFKTCAIKGEG 165 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~ 165 (182)
+|++++++-- ..........+. .+.|+++++||+|+.+. .+..+...+...... .....++++||++|+|
T Consensus 84 LVVa~dDGv~--pQTiEAI~hak~---a~vP~iVAiNKiDk~~~-np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~G 157 (509)
T COG0532 84 LVVAADDGVM--PQTIEAINHAKA---AGVPIVVAINKIDKPEA-NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEG 157 (509)
T ss_pred EEEEccCCcc--hhHHHHHHHHHH---CCCCEEEEEecccCCCC-CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCC
Confidence 9999998732 222111222222 68999999999999854 455555544432221 2447899999999999
Q ss_pred HHHHHHHHHH
Q 030120 166 LFEGMDWLSN 175 (182)
Q Consensus 166 v~~l~~~i~~ 175 (182)
+++|++.+.-
T Consensus 158 i~eLL~~ill 167 (509)
T COG0532 158 IDELLELILL 167 (509)
T ss_pred HHHHHHHHHH
Confidence 9999998764
|
|
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.1e-19 Score=132.06 Aligned_cols=165 Identities=13% Similarity=0.064 Sum_probs=108.6
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc------cccccc--ceee---------------EEE------------
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS------TIPTIG--FNVE---------------TVQ------------ 57 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~------~~~t~~--~~~~---------------~~~------------ 57 (182)
+.+..++|+++|+..+|||||+.+|.+..... ..-|+. +... ...
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 45778999999999999999999998644211 111111 1100 000
Q ss_pred ----ECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 58 ----YNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 58 ----~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
.....+.++|+||++.+..........+|++++|+|+.++.......+.+. +....+ -.++++++||+|+.+.
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~lg--i~~iIVvlNKiDlv~~ 186 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIMK--LKHIIILQNKIDLVKE 186 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHcC--CCcEEEEEecccccCH
Confidence 002478999999999988777778889999999999997521222333332 222221 2478999999999753
Q ss_pred CCHHHHHHHhCccc--ccCCceEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030120 134 LDDAAVSEALELHK--IKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 134 ~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
....+..+.+.... ......+++++||++|.|++.|++.|.+.++..
T Consensus 187 ~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~ 235 (460)
T PTZ00327 187 AQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIP 235 (460)
T ss_pred HHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence 22222222222111 012467899999999999999999999877654
|
|
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.6e-19 Score=132.54 Aligned_cols=152 Identities=18% Similarity=0.121 Sum_probs=97.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCc--cc------------cc----------------------ccccceeeEEE
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEV--VS------------TI----------------------PTIGFNVETVQ 57 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~--~~------------~~----------------------~t~~~~~~~~~ 57 (182)
....++++++|++++|||||+++|+...- .. .. .|++.....+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 46789999999999999999999974421 10 00 02223333344
Q ss_pred ECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--
Q 030120 58 YNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-- 135 (182)
Q Consensus 58 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-- 135 (182)
.++..+.++||||++.+.......+..+|++++|+|+..+..... ...+ .+....+ ..|+++++||+|+.+...
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt-~~~~-~l~~~lg--~~~iIvvvNKiD~~~~~~~~ 179 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQT-RRHS-FIATLLG--IKHLVVAVNKMDLVDYSEEV 179 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccc-hHHH-HHHHHhC--CCceEEEEEeeccccchhHH
Confidence 567899999999999887666666799999999999987632111 1111 1222221 247899999999964321
Q ss_pred HHHHHHHhCccc--cc-CCceEEEEecCCCCCCHHHH
Q 030120 136 DAAVSEALELHK--IK-NRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 136 ~~~~~~~~~~~~--~~-~~~~~~~~~Sa~~~~~v~~l 169 (182)
..++...+.... .. ....+++++||++|.|+.++
T Consensus 180 ~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 180 FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 122222221100 11 23578999999999998753
|
|
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.1e-19 Score=137.98 Aligned_cols=160 Identities=17% Similarity=0.111 Sum_probs=103.4
Q ss_pred HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc--------------cc----------------------cc
Q 030120 5 FSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVS--------------TI----------------------PT 48 (182)
Q Consensus 5 ~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--------------~~----------------------~t 48 (182)
+..++........++|+++|++++|||||+++|+...-.. .. .|
T Consensus 12 ~~~~~~~~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~T 91 (632)
T PRK05506 12 ILAYLAQHERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGIT 91 (632)
T ss_pred HHHHHhhccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcC
Confidence 4556666677788999999999999999999998543110 00 02
Q ss_pred ccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCC
Q 030120 49 IGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQ 128 (182)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~ 128 (182)
.+.....+...+.++.++||||++.+.......+..+|++++|+|+..+..-+ ....+. +.... ...++++++||+
T Consensus 92 id~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~-t~e~~~-~~~~~--~~~~iivvvNK~ 167 (632)
T PRK05506 92 IDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQ-TRRHSF-IASLL--GIRHVVLAVNKM 167 (632)
T ss_pred ceeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcccc-CHHHHH-HHHHh--CCCeEEEEEEec
Confidence 22233344557789999999999887666666788999999999998763211 111111 12221 136789999999
Q ss_pred CCCCCCC--HHHHHHHhCcc--cccCCceEEEEecCCCCCCHHH
Q 030120 129 DLPGALD--DAAVSEALELH--KIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 129 D~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
|+.+... ..++...+... .......+++++||++|.|+.+
T Consensus 168 D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 168 DLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred ccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 9964221 12222222111 1122346799999999999873
|
|
| >KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-18 Score=127.24 Aligned_cols=160 Identities=19% Similarity=0.174 Sum_probs=117.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCc--cc----------------ccccccceeeEEEECC---EEEEEEECCCCCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEV--VS----------------TIPTIGFNVETVQYNN---IKFQVWDLGGQTS 73 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~--~~----------------~~~t~~~~~~~~~~~~---~~~~~~D~~g~~~ 73 (182)
++--++.|+-+...|||||..+++...- .. ..-|+......+.|.+ +.+.++|||||.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 5667899999999999999999963221 00 1113333334555555 8999999999999
Q ss_pred CccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCce
Q 030120 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQW 153 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 153 (182)
|.......+.-|+++++|+|++++---+.. ..+...++ .+..+|.|+||+|+... .++++...+... +.....
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~-anf~lAfe----~~L~iIpVlNKIDlp~a-dpe~V~~q~~~l-F~~~~~ 210 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTV-ANFYLAFE----AGLAIIPVLNKIDLPSA-DPERVENQLFEL-FDIPPA 210 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHH-HHHHHHHH----cCCeEEEeeeccCCCCC-CHHHHHHHHHHH-hcCCcc
Confidence 999999999999999999999988432222 33333333 36889999999999765 444554444322 233445
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhcCC
Q 030120 154 AIFKTCAIKGEGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 154 ~~~~~Sa~~~~~v~~l~~~i~~~~~~~~ 181 (182)
+++.+||++|.|++++++.|+++++++.
T Consensus 211 ~~i~vSAK~G~~v~~lL~AII~rVPpP~ 238 (650)
T KOG0462|consen 211 EVIYVSAKTGLNVEELLEAIIRRVPPPK 238 (650)
T ss_pred ceEEEEeccCccHHHHHHHHHhhCCCCC
Confidence 7999999999999999999999998763
|
|
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.2e-18 Score=121.70 Aligned_cols=157 Identities=21% Similarity=0.193 Sum_probs=115.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEEC-CEEEEEEECCCCCCCcc--------chhhh
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYN-NIKFQVWDLGGQTSIRP--------YWRCY 81 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~~~--------~~~~~ 81 (182)
...-..|+++|-.|+|||||+|++.+..... ...|.+.....+... +..+.+-||-|.-+-.. .+...
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE 268 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEE 268 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHH
Confidence 3566799999999999999999999877543 555777777888775 68999999999432211 11223
Q ss_pred cCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCC
Q 030120 82 FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
...+|+++.|+|++++... ........++...+....|+++|.||+|+..+.. ....+... . + ..+.+||+
T Consensus 269 ~~~aDlllhVVDaSdp~~~-~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~---~~~~~~~~---~-~-~~v~iSA~ 339 (411)
T COG2262 269 VKEADLLLHVVDASDPEIL-EKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE---ILAELERG---S-P-NPVFISAK 339 (411)
T ss_pred hhcCCEEEEEeecCChhHH-HHHHHHHHHHHHcCCCCCCEEEEEecccccCchh---hhhhhhhc---C-C-CeEEEEec
Confidence 4678999999999999543 3334555666666666799999999999865432 11111111 1 1 58999999
Q ss_pred CCCCHHHHHHHHHHHHhc
Q 030120 162 KGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 162 ~~~~v~~l~~~i~~~~~~ 179 (182)
+|.|++.|.+.|.+.+..
T Consensus 340 ~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 340 TGEGLDLLRERIIELLSG 357 (411)
T ss_pred cCcCHHHHHHHHHHHhhh
Confidence 999999999999998774
|
|
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.9e-18 Score=133.94 Aligned_cols=116 Identities=20% Similarity=0.132 Sum_probs=85.8
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc--c-------------------ccccccceeeEEEECCEEEEEEECCCC
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVV--S-------------------TIPTIGFNVETVQYNNIKFQVWDLGGQ 71 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~--~-------------------~~~t~~~~~~~~~~~~~~~~~~D~~g~ 71 (182)
..++-.+|+|+|++|+|||||+++|+...-. . ...|.......+.+.+..+.+|||||+
T Consensus 6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~ 85 (689)
T TIGR00484 6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGH 85 (689)
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCC
Confidence 3456679999999999999999999742210 0 111333455667778999999999999
Q ss_pred CCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 72 TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
..+...+...++.+|++++|+|+.++..... ...+... .. .+.|+++++||+|+...
T Consensus 86 ~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~-~~---~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 86 VDFTVEVERSLRVLDGAVAVLDAVGGVQPQS-ETVWRQA-NR---YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred cchhHHHHHHHHHhCEEEEEEeCCCCCChhH-HHHHHHH-HH---cCCCEEEEEECCCCCCC
Confidence 9888788888999999999999988754332 2233322 22 46899999999998643
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-18 Score=128.95 Aligned_cols=147 Identities=18% Similarity=0.158 Sum_probs=95.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc--c----------------------------------ccccccceeeEEEECCE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVV--S----------------------------------TIPTIGFNVETVQYNNI 61 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~--~----------------------------------~~~t~~~~~~~~~~~~~ 61 (182)
++++++|+.++|||||+++|+...-. . ...|.+.....+..++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999999633210 0 00123333444555778
Q ss_pred EEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH--HHH
Q 030120 62 KFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD--AAV 139 (182)
Q Consensus 62 ~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~ 139 (182)
++.++||||++.+.......+..+|++++|+|+..+...+ ..+.+. +....+ ..++++++||+|+.+.... +++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~q-t~~~~~-~~~~~~--~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQ-TRRHSY-IASLLG--IRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccc-cHHHHH-HHHHcC--CCcEEEEEEecccccchHHHHHHH
Confidence 9999999999988776777789999999999998764322 121122 222221 3468999999999643211 112
Q ss_pred HHHhCcc--cccCCceEEEEecCCCCCCHHH
Q 030120 140 SEALELH--KIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 140 ~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
.+.+... .......+++++||++|.|+.+
T Consensus 157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 2222111 1122356799999999999875
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.4e-18 Score=105.48 Aligned_cols=103 Identities=23% Similarity=0.305 Sum_probs=71.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc----ccccccceeeEEEECCEEEEEEECCCCCCCcc---------chhhhcCCC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP---------YWRCYFPNT 85 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~---------~~~~~~~~~ 85 (182)
+|+++|.+|+|||||+|+|++..... ...|....+..+.+.+..+.++||||...... .....+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 68999999999999999999865432 22244455566677899999999999654211 123334889
Q ss_pred CeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeC
Q 030120 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANK 127 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK 127 (182)
|++++|+|+.++. ......+...++ .+.|+++|+||
T Consensus 81 d~ii~vv~~~~~~--~~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNPI--TEDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSHS--HHHHHHHHHHHH----TTSEEEEEEES
T ss_pred CEEEEEEECCCCC--CHHHHHHHHHHh----cCCCEEEEEcC
Confidence 9999999987732 222222222222 57999999998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.8e-18 Score=129.15 Aligned_cols=151 Identities=15% Similarity=0.119 Sum_probs=100.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC--cc-------------------------c-------ccccccceeeEEEEC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGE--VV-------------------------S-------TIPTIGFNVETVQYN 59 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~--~~-------------------------~-------~~~t~~~~~~~~~~~ 59 (182)
....++++++|+.++|||||+.+|+... .. . ...|.+.....+.++
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 3567899999999999999999997411 00 0 111333334445557
Q ss_pred CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCccc------HHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCC
Q 030120 60 NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR------IQTAKEEFHAILEEEELKGAV-ALIFANKQDLPG 132 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~ 132 (182)
+..+.++|||||.++.......+..+|++++|+|+..+.- -....+.+... .. .++| +++++||+|...
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~-~~---~gi~~iiv~vNKmD~~~ 159 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLA-FT---LGVKQMIVCINKMDDKT 159 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHH-HH---cCCCeEEEEEEcccccc
Confidence 8899999999999998888888899999999999987631 02333333332 22 3554 789999999532
Q ss_pred --C--CCHHHHHHHhC----cccccCCceEEEEecCCCCCCHHH
Q 030120 133 --A--LDDAAVSEALE----LHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 133 --~--~~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
. ...+++...+. ........++++++|+.+|.|+.+
T Consensus 160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 1 11222222222 222222458899999999999853
|
|
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.5e-19 Score=115.83 Aligned_cols=127 Identities=28% Similarity=0.404 Sum_probs=79.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEE---CCEEEEEEECCCCCCCccchhhh---cCCCCeEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY---NNIKFQVWDLGGQTSIRPYWRCY---FPNTEAVI 89 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~---~~~~d~ii 89 (182)
+.-.|+++|+.|+|||+|+..|..+...+..+....+.. ..+ ....+.++|+|||++++...... ...+.+||
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~~-~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNIA-YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---SSEEEE-CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCce-EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 345799999999999999999999876554443433322 222 45689999999999988755544 78899999
Q ss_pred EEEeCCC-cccHHHHHHHHHHHHhccc--cCCCeEEEEEeCCCCCCCCCHHHHHHHh
Q 030120 90 YVVDSSD-TDRIQTAKEEFHAILEEEE--LKGAVALIFANKQDLPGALDDAAVSEAL 143 (182)
Q Consensus 90 ~v~d~~~-~~s~~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~~~~~~~~~~~~ 143 (182)
||+|... .....+..+.+..++.... ...+|++++.||.|+........+...+
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~L 137 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLL 137 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHH
T ss_pred EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHH
Confidence 9999974 2334555555555544332 3578999999999997665554444433
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.2e-20 Score=120.44 Aligned_cols=160 Identities=19% Similarity=0.254 Sum_probs=126.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc--eeeEEEE---CCEEEEEEECCCCCCCccchhhhcCCCCeE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQY---NNIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
..-++++|+|..|+|||+++.+++...+.. +..|++. ......+ .-+++++||.+||+++..+..-+++.+++.
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~ 102 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA 102 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence 456799999999999999999999998887 6777763 3444444 346788999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccC---CCeEEEEEeCCCCCCCCCH---HHHHHHhCcccccCCceEEEEecCCC
Q 030120 89 IYVVDSSDTDRIQTAKEEFHAILEEEELK---GAVALIFANKQDLPGALDD---AAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~~iivv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
.+|||+++.-+|+...+|..+.......+ -.|+++..||||....... ..+....+ ......++++|++.
T Consensus 103 ~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~k----engf~gwtets~Ke 178 (229)
T KOG4423|consen 103 FIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKK----ENGFEGWTETSAKE 178 (229)
T ss_pred EEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHh----ccCccceeeecccc
Confidence 99999999999999999998886654333 3789999999998654222 22222222 23334599999999
Q ss_pred CCCHHHHHHHHHHHHh
Q 030120 163 GEGLFEGMDWLSNTLK 178 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~~ 178 (182)
+.+++|+-..+++.+.
T Consensus 179 nkni~Ea~r~lVe~~l 194 (229)
T KOG4423|consen 179 NKNIPEAQRELVEKIL 194 (229)
T ss_pred ccChhHHHHHHHHHHH
Confidence 9999999999888654
|
|
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.8e-17 Score=125.75 Aligned_cols=113 Identities=17% Similarity=0.235 Sum_probs=80.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc--CCccc---c--------------------cccccceeeEEEECCEEEEEEECC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQM--GEVVS---T--------------------IPTIGFNVETVQYNNIKFQVWDLG 69 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~--~~~~~---~--------------------~~t~~~~~~~~~~~~~~~~~~D~~ 69 (182)
.+..+++|+|++++|||||+++++. +.... . ..+.......+.+.+..+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 5678999999999999999999853 11110 0 001112234456688999999999
Q ss_pred CCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030120 70 GQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
|+..+.......+..+|++++|+|+.++.. .....++. .... .+.|+++++||+|+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~-~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLME-VTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHH-HHHh---cCCCEEEEEECccccC
Confidence 998887777778899999999999987632 22233333 3222 4689999999999853
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.2e-18 Score=126.30 Aligned_cols=150 Identities=15% Similarity=0.099 Sum_probs=98.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCc--c-------------------------c-------ccccccceeeEEEEC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEV--V-------------------------S-------TIPTIGFNVETVQYN 59 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~--~-------------------------~-------~~~t~~~~~~~~~~~ 59 (182)
....++++++|+.++|||||+.+|+...- . . ...|+......+...
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 35678999999999999999999863110 0 0 111223333344457
Q ss_pred CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCccc------HHHHHHHHHHHHhccccCCC-eEEEEEeCCCCCC
Q 030120 60 NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR------IQTAKEEFHAILEEEELKGA-VALIFANKQDLPG 132 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~-~iivv~nK~D~~~ 132 (182)
+..+.++|||||++|.......+..+|++++|+|+.++.- .....+.+... .. .++ ++++++||+|+.+
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~-~~---~gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLA-FT---LGVKQMICCCNKMDATT 159 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHH-HH---cCCCcEEEEEEcccCCc
Confidence 7899999999999999888889999999999999987421 02333332222 22 345 5788999999862
Q ss_pred CCC----H----HHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030120 133 ALD----D----AAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 133 ~~~----~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
... . +++...++........++++++||++|.|+.
T Consensus 160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~ 202 (447)
T PLN00043 160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMI 202 (447)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEecccccccc
Confidence 111 1 2222222222222235789999999999974
|
|
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.4e-17 Score=113.78 Aligned_cols=154 Identities=23% Similarity=0.237 Sum_probs=108.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECCEEEEEEECCCCC-------CCccchhhhcCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQT-------SIRPYWRCYFPN 84 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~-------~~~~~~~~~~~~ 84 (182)
.-..+++++|.|++|||||++.|.+-+... ..+|.......+.|++..+++.|+||.- ..........++
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 345689999999999999999998876443 4556678888899999999999999822 123445667899
Q ss_pred CCeEEEEEeCCCccc-HHHHHH----------------------------------------HHHHHHhc----------
Q 030120 85 TEAVIYVVDSSDTDR-IQTAKE----------------------------------------EFHAILEE---------- 113 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s-~~~~~~----------------------------------------~~~~~~~~---------- 113 (182)
||.+++|+|+..... .+.... ....++++
T Consensus 141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I 220 (365)
T COG1163 141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI 220 (365)
T ss_pred CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence 999999999986542 111111 11111111
Q ss_pred ------------c-c-cCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 030120 114 ------------E-E-LKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 114 ------------~-~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
. . ..=+|.++|.||+|+... +++....... ..+++||..+.|++++.+.|.+.+.
T Consensus 221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~---e~~~~l~~~~-------~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL---EELERLARKP-------NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred ecCCcHHHHHHHHhhcceeeeeEEEEecccccCH---HHHHHHHhcc-------ceEEEecccCCCHHHHHHHHHHhhC
Confidence 0 1 112689999999999763 2333222211 5899999999999999999998764
|
|
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.6e-19 Score=130.46 Aligned_cols=163 Identities=14% Similarity=0.160 Sum_probs=121.2
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccc---eeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGF---NVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~---~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...+.+||+++|+.|+||||||-++....+.+..|..-. ....+.-...+..++|++..+..+......++++|+++
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~ 84 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC 84 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence 457889999999999999999999999988774442211 01223335677899999987777777778889999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccc--cCCCeEEEEEeCCCCCCCCCH---HHHHHHhCcccccCCceEEEEecCCCCC
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEE--LKGAVALIFANKQDLPGALDD---AAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
++++.+++.+++.....|..++++.. ..+.|+|+|+||+|..+.... .++...+... ...-.+++|||++..
T Consensus 85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f---~EiEtciecSA~~~~ 161 (625)
T KOG1707|consen 85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAF---AEIETCIECSALTLA 161 (625)
T ss_pred EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHh---HHHHHHHhhhhhhhh
Confidence 99999999999988877777766654 247899999999999765333 1122222211 111248999999999
Q ss_pred CHHHHHHHHHHHHh
Q 030120 165 GLFEGMDWLSNTLK 178 (182)
Q Consensus 165 ~v~~l~~~i~~~~~ 178 (182)
++.++|....+.+.
T Consensus 162 n~~e~fYyaqKaVi 175 (625)
T KOG1707|consen 162 NVSELFYYAQKAVI 175 (625)
T ss_pred hhHhhhhhhhheee
Confidence 99999998877653
|
|
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-17 Score=130.27 Aligned_cols=115 Identities=20% Similarity=0.191 Sum_probs=84.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC-----c---c-------------cccccccceeeEEEECCEEEEEEECCCCC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGE-----V---V-------------STIPTIGFNVETVQYNNIKFQVWDLGGQT 72 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~-----~---~-------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 72 (182)
..+..+|+|+|++++|||||+++|+... . . ....|.......+.+++..+.++||||+.
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 84 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV 84 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence 3566789999999999999999997421 0 0 01124445556677789999999999998
Q ss_pred CCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 73 SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
.+...+...++.+|++++|+|+.++..... ...+... .. .+.|+++++||+|+...
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~-~~---~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQA-DK---YGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHH-HH---cCCCEEEEEECCCCCCC
Confidence 887788888999999999999988743222 2233322 22 46899999999998743
|
|
| >KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.7e-17 Score=122.17 Aligned_cols=155 Identities=21% Similarity=0.173 Sum_probs=113.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccc---cccccceeeEEEE-CCEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVST---IPTIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~---~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
++..-|.|+|+...|||||+..|-+..+... .-|..+.-..+.. ++..+.|.|||||..|..+....-.-+|++++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL 230 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIVVL 230 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence 5667789999999999999999977665541 1122232222333 77999999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCccc----ccCCceEEEEecCCCCCCH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHK----IKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~~v 166 (182)
|+.+.|+-.-+... .++.....+.|+++.+||+|.+.. +++.+...+.... .-....+++++||++|+|+
T Consensus 231 VVAadDGVmpQT~E-----aIkhAk~A~VpiVvAinKiDkp~a-~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl 304 (683)
T KOG1145|consen 231 VVAADDGVMPQTLE-----AIKHAKSANVPIVVAINKIDKPGA-NPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENL 304 (683)
T ss_pred EEEccCCccHhHHH-----HHHHHHhcCCCEEEEEeccCCCCC-CHHHHHHHHHHcCccHHHcCCceeEEEeecccCCCh
Confidence 99999873222211 222333368999999999998765 4445444443221 1246688999999999999
Q ss_pred HHHHHHHHH
Q 030120 167 FEGMDWLSN 175 (182)
Q Consensus 167 ~~l~~~i~~ 175 (182)
+.|-+.+.-
T Consensus 305 ~~L~eaill 313 (683)
T KOG1145|consen 305 DLLEEAILL 313 (683)
T ss_pred HHHHHHHHH
Confidence 999888764
|
|
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.8e-17 Score=117.71 Aligned_cols=156 Identities=24% Similarity=0.222 Sum_probs=97.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEE------------------------CCEEEEEEECCCC-
Q 030120 20 ILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQY------------------------NNIKFQVWDLGGQ- 71 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~------------------------~~~~~~~~D~~g~- 71 (182)
|+++|.||+|||||+|++.+..... ...|...+.....+ ...++++|||||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 5799999999999999999876432 12233333322221 3367999999997
Q ss_pred ---CCCccc---hhhhcCCCCeEEEEEeCCCc-------------ccHHHH-------HHH-------------------
Q 030120 72 ---TSIRPY---WRCYFPNTEAVIYVVDSSDT-------------DRIQTA-------KEE------------------- 106 (182)
Q Consensus 72 ---~~~~~~---~~~~~~~~d~ii~v~d~~~~-------------~s~~~~-------~~~------------------- 106 (182)
+....+ ....++++|++++|+|+... +...+. ..|
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333333 23358999999999999731 101111 000
Q ss_pred ---------------------HHHHHhc---------------------cccCCCeEEEEEeCCCCCCCCCHHHHHHHhC
Q 030120 107 ---------------------FHAILEE---------------------EELKGAVALIFANKQDLPGALDDAAVSEALE 144 (182)
Q Consensus 107 ---------------------~~~~~~~---------------------~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~ 144 (182)
..+++.. .....+|+++++||+|+.+. .+..+.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~---~~~~~~l~ 237 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDA---ENNISKLR 237 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccCh---HHHHHHHH
Confidence 0001100 01235799999999997532 22222222
Q ss_pred cccccCCceEEEEecCCCCCCHHHHHH-HHHHHHhcCC
Q 030120 145 LHKIKNRQWAIFKTCAIKGEGLFEGMD-WLSNTLKSGG 181 (182)
Q Consensus 145 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~-~i~~~~~~~~ 181 (182)
. ......++++||+.+.+++++.+ .+.+.+++.+
T Consensus 238 ~---~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~ 272 (318)
T cd01899 238 L---KYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDS 272 (318)
T ss_pred h---hCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCC
Confidence 1 22345799999999999999998 6999988754
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-17 Score=122.69 Aligned_cols=162 Identities=16% Similarity=0.151 Sum_probs=105.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc----ccccccceeeEEEECCEEEEEEECCCCCC-Ccc--------chhhh
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTS-IRP--------YWRCY 81 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~-~~~--------~~~~~ 81 (182)
+..++|+|+|+||+|||||+|.|.+.+... ...|.+.....++++++++.+.||+|-.+ ... .....
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 577999999999999999999999988654 33355566667778999999999999544 111 12345
Q ss_pred cCCCCeEEEEEeCCCcccH--HHHHHHHHHHHhc-----cccCCCeEEEEEeCCCCCCCCCH--HHHHHHhCcccccCCc
Q 030120 82 FPNTEAVIYVVDSSDTDRI--QTAKEEFHAILEE-----EELKGAVALIFANKQDLPGALDD--AAVSEALELHKIKNRQ 152 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~-----~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~ 152 (182)
+..+|++++|+|+...+.- -.....+...-.. ..-.+.|++++.||+|+..+... ......... .....
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~--~~~~~ 423 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA--EGRSV 423 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc--ccCcc
Confidence 6789999999999433221 1212222222111 11135789999999999654211 100111111 11223
Q ss_pred eE-EEEecCCCCCCHHHHHHHHHHHHh
Q 030120 153 WA-IFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 153 ~~-~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
++ ..++|+++++|++.|.+.+.+.+.
T Consensus 424 ~~i~~~vs~~tkeg~~~L~~all~~~~ 450 (531)
T KOG1191|consen 424 FPIVVEVSCTTKEGCERLSTALLNIVE 450 (531)
T ss_pred cceEEEeeechhhhHHHHHHHHHHHHH
Confidence 33 555999999999999998887654
|
|
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.5e-17 Score=111.95 Aligned_cols=159 Identities=14% Similarity=0.069 Sum_probs=98.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-c----cccccceeeEEEECCEEEEEEECCCCCCCcc-------c----hhhh
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-T----IPTIGFNVETVQYNNIKFQVWDLGGQTSIRP-------Y----WRCY 81 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~----~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~----~~~~ 81 (182)
++|+++|.+|+|||||+|++++..... . ..|.........+.+..+.++||||...... . ....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 479999999999999999999987543 1 2344455666667889999999999654321 1 1123
Q ss_pred cCCCCeEEEEEeCCCccc--HHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHh----CcccccCCceEE
Q 030120 82 FPNTEAVIYVVDSSDTDR--IQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEAL----ELHKIKNRQWAI 155 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~----~~~~~~~~~~~~ 155 (182)
...+|++++|+++.+ .+ .....+++.+.+... .-.++++++|++|.......++..... .... ...+-.+
T Consensus 81 ~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~--~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~-~~c~~r~ 156 (196)
T cd01852 81 APGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEK--VLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLL-EKCGGRY 156 (196)
T ss_pred CCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChH--hHhcEEEEEECccccCCCcHHHHHHhccHHHHHHH-HHhCCeE
Confidence 467899999999986 32 222223333332211 125789999999986543322221111 0000 1111123
Q ss_pred EEec-----CCCCCCHHHHHHHHHHHHhcC
Q 030120 156 FKTC-----AIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 156 ~~~S-----a~~~~~v~~l~~~i~~~~~~~ 180 (182)
+..+ +..+.++++|++.|.+.+.++
T Consensus 157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~ 186 (196)
T cd01852 157 VAFNNKAKGEEQEQQVKELLAKVESMVKEN 186 (196)
T ss_pred EEEeCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence 3332 456778999999999988863
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.4e-17 Score=115.55 Aligned_cols=158 Identities=23% Similarity=0.281 Sum_probs=105.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEE-CCEEEEEEECCCCC-------CCccchhhhcCCCCe
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQY-NNIKFQVWDLGGQT-------SIRPYWRCYFPNTEA 87 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~-~~~~~~~~D~~g~~-------~~~~~~~~~~~~~d~ 87 (182)
-|+++|-||+|||||++.+...+... ..+|..++...+.. ....|.+-|.||.- .+.......++++.+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~v 240 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRV 240 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhhe
Confidence 57899999999999999998766433 34455577777765 56779999999932 233344556788999
Q ss_pred EEEEEeCCCccc---HHHHHHHHHHHHh-ccccCCCeEEEEEeCCCCCCC-CCHHHHHHHhCcccccCCceE-EEEecCC
Q 030120 88 VIYVVDSSDTDR---IQTAKEEFHAILE-EEELKGAVALIFANKQDLPGA-LDDAAVSEALELHKIKNRQWA-IFKTCAI 161 (182)
Q Consensus 88 ii~v~d~~~~~s---~~~~~~~~~~~~~-~~~~~~~~iivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~ 161 (182)
++.|+|++..+. .++......++.. .....++|.++|+||+|+... +..+.+.+.+.. ...+. ...+|+.
T Consensus 241 L~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~----~~~~~~~~~ISa~ 316 (369)
T COG0536 241 LLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAE----ALGWEVFYLISAL 316 (369)
T ss_pred eEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHH----hcCCCcceeeehh
Confidence 999999985542 3333333333322 234457899999999996433 223333333322 11222 1229999
Q ss_pred CCCCHHHHHHHHHHHHhcC
Q 030120 162 KGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 162 ~~~~v~~l~~~i~~~~~~~ 180 (182)
+++|++++...+.+.+.+.
T Consensus 317 t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 317 TREGLDELLRALAELLEET 335 (369)
T ss_pred cccCHHHHHHHHHHHHHHh
Confidence 9999999999998877654
|
|
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.3e-17 Score=129.01 Aligned_cols=115 Identities=19% Similarity=0.157 Sum_probs=83.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhc--CCc------c-------------cccccccceeeEEEECCEEEEEEECCCCC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQM--GEV------V-------------STIPTIGFNVETVQYNNIKFQVWDLGGQT 72 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~--~~~------~-------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 72 (182)
.++-.+|+|+|++|+|||||+++|+. +.. . ....|.......+.+.+..+.++||||+.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 45677999999999999999999973 110 0 01123334445567789999999999998
Q ss_pred CCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 73 SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
.+.......+..+|++++|+|+..+...+. ...+..... .+.|+++++||+|+...
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~----~~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADK----YKVPRIAFVNKMDRTGA 142 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHH----cCCCEEEEEECCCCCCC
Confidence 877777778889999999999987743322 223333322 46889999999998643
|
|
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-17 Score=113.72 Aligned_cols=165 Identities=18% Similarity=0.257 Sum_probs=110.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc---cccccc-ceeeEEEECCEEEEEEECCCCCC-------Cccchhhhc
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIG-FNVETVQYNNIKFQVWDLGGQTS-------IRPYWRCYF 82 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~-~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~ 82 (182)
....++++++|..|+|||||||+++.++..+ ...+.+ ..+....+....+.+||+||.++ ++.....++
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l 115 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYL 115 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHh
Confidence 4688999999999999999999999766544 222222 22333344668999999999665 344467788
Q ss_pred CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC---------CHHHHHHHhCc-----ccc
Q 030120 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL---------DDAAVSEALEL-----HKI 148 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~---------~~~~~~~~~~~-----~~~ 148 (182)
.+.|.+++++++.++.- ..-...+..+.... .+.++++++|++|...+. ....+.+.+.. ...
T Consensus 116 ~~~DLvL~l~~~~draL-~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~ 192 (296)
T COG3596 116 PKLDLVLWLIKADDRAL-GTDEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL 192 (296)
T ss_pred hhccEEEEeccCCCccc-cCCHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 89999999999998742 12222334443332 248999999999986542 01111111110 000
Q ss_pred cCCceEEEEecCCCCCCHHHHHHHHHHHHhcCC
Q 030120 149 KNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 149 ~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~~ 181 (182)
-..--|++..|.+.++|++++...++..++.+.
T Consensus 193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~ 225 (296)
T COG3596 193 FQEVKPVVAVSGRLPWGLKELVRALITALPVEA 225 (296)
T ss_pred HhhcCCeEEeccccCccHHHHHHHHHHhCcccc
Confidence 112336888889999999999999999988654
|
|
| >KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.9e-17 Score=106.54 Aligned_cols=160 Identities=24% Similarity=0.382 Sum_probs=118.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcC---CCCeEEEEEe
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFP---NTEAVIYVVD 93 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~---~~d~ii~v~d 93 (182)
.-.|+++|+.++|||+|+-+|..+.+....+.+..+.....+......++|.|||++.+.-...+++ ++.+++||+|
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVD 117 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVD 117 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEEEe
Confidence 3579999999999999999999998887777888888888888888999999999999877777776 7899999999
Q ss_pred CCCc-ccHHHHHHHHHHHHhcc--ccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcc------------------------
Q 030120 94 SSDT-DRIQTAKEEFHAILEEE--ELKGAVALIFANKQDLPGALDDAAVSEALELH------------------------ 146 (182)
Q Consensus 94 ~~~~-~s~~~~~~~~~~~~~~~--~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~------------------------ 146 (182)
...- ....+..+.+-.++... .....|++++.||.|+.-....+.+.+.++.+
T Consensus 118 Sa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~t 197 (238)
T KOG0090|consen 118 SATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFT 197 (238)
T ss_pred ccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccccccc
Confidence 8643 22444444444444433 34678999999999996544432222211100
Q ss_pred -----------cccCCceEEEEecCCCCCCHHHHHHHHHHHH
Q 030120 147 -----------KIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 147 -----------~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 177 (182)
........+.++|++++ +++++-+||.+.+
T Consensus 198 lg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 198 LGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred ccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 01113467899999999 7999999987753
|
|
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.8e-16 Score=119.19 Aligned_cols=112 Identities=17% Similarity=0.121 Sum_probs=74.5
Q ss_pred EEEEEEECCCCCCC-----ccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC
Q 030120 61 IKFQVWDLGGQTSI-----RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD 135 (182)
Q Consensus 61 ~~~~~~D~~g~~~~-----~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~ 135 (182)
..+.++||||-... .......+..+|+|+||+|+.+..+..+ ..+...++... .+.|+++|+||+|+.+...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~-K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVG-QSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcC-CCCCEEEEEEcccCCCccc
Confidence 46789999996542 2234557899999999999987543322 23333333321 1259999999999864322
Q ss_pred --HHHHHHHhCcc--cccCCceEEEEecCCCCCCHHHHHHHHHH
Q 030120 136 --DAAVSEALELH--KIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 136 --~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 175 (182)
.+.+...+... ........++++||++|.|++.+++.|..
T Consensus 307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 34444443222 12233456999999999999999999876
|
|
| >cd00066 G-alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.3e-16 Score=113.43 Aligned_cols=133 Identities=26% Similarity=0.367 Sum_probs=101.9
Q ss_pred ccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCc----------ccHHHHHHHHHHHHhcccc
Q 030120 47 PTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDT----------DRIQTAKEEFHAILEEEEL 116 (182)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~ 116 (182)
||+++....+.+++..+.+||++|+...+..|..++.++++++||+|+++. .++......+..++.....
T Consensus 147 ~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~ 226 (317)
T cd00066 147 KTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF 226 (317)
T ss_pred ccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc
Confidence 355666677777889999999999999999999999999999999999874 4577888888888887777
Q ss_pred CCCeEEEEEeCCCCCCC------------------CCHHHHHHHhCccc-----ccCCceEEEEecCCCCCCHHHHHHHH
Q 030120 117 KGAVALIFANKQDLPGA------------------LDDAAVSEALELHK-----IKNRQWAIFKTCAIKGEGLFEGMDWL 173 (182)
Q Consensus 117 ~~~~iivv~nK~D~~~~------------------~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~l~~~i 173 (182)
.+.|+++++||.|+... ...+.....+.... .....+....++|.+-.+++.+|+.+
T Consensus 227 ~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v 306 (317)
T cd00066 227 ANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAV 306 (317)
T ss_pred cCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHH
Confidence 78999999999996321 11122222222111 12356678889999999999999998
Q ss_pred HHHHhc
Q 030120 174 SNTLKS 179 (182)
Q Consensus 174 ~~~~~~ 179 (182)
.+.+..
T Consensus 307 ~~~i~~ 312 (317)
T cd00066 307 KDIILQ 312 (317)
T ss_pred HHHHHH
Confidence 887654
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. |
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-16 Score=115.56 Aligned_cols=152 Identities=18% Similarity=0.202 Sum_probs=101.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC------------------------ccc----------ccccccceeeEEEEC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGE------------------------VVS----------TIPTIGFNVETVQYN 59 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~------------------------~~~----------~~~t~~~~~~~~~~~ 59 (182)
....++++++|+..+|||||+-+|+.+- +.. ..-|++.....++-+
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 3568899999999999999999996221 110 111333333444446
Q ss_pred CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCccc------HHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 60 NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR------IQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
...+.++|+|||..+-..+......+|+.++|+|+.+++- ..+.++. .-+.+..+ -..+|+++||.|+.+.
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH-~~La~tlG--i~~lIVavNKMD~v~w 160 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREH-AFLARTLG--IKQLIVAVNKMDLVSW 160 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHH-HHHHHhcC--CceEEEEEEccccccc
Confidence 7889999999999998888888999999999999998741 1122221 11222222 3568999999999865
Q ss_pred CCH--HH----HHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 134 LDD--AA----VSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 134 ~~~--~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
... ++ +....+........++++++|+..|.|+.+
T Consensus 161 de~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 161 DEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 332 22 222222233334468899999999988754
|
|
| >smart00275 G_alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.6e-16 Score=114.08 Aligned_cols=132 Identities=23% Similarity=0.349 Sum_probs=100.2
Q ss_pred cccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCc----------ccHHHHHHHHHHHHhccccC
Q 030120 48 TIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDT----------DRIQTAKEEFHAILEEEELK 117 (182)
Q Consensus 48 t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~ 117 (182)
|+++....+.+.+..+.+||++|+...+..|..++.++++++||+|+++. .++..+...+..++......
T Consensus 171 T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~ 250 (342)
T smart00275 171 TTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFA 250 (342)
T ss_pred ccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcccc
Confidence 55666667777888999999999999999999999999999999999963 46788888888888877778
Q ss_pred CCeEEEEEeCCCCCCC-----------------CCHHHHHHHhCc-----ccc-cCCceEEEEecCCCCCCHHHHHHHHH
Q 030120 118 GAVALIFANKQDLPGA-----------------LDDAAVSEALEL-----HKI-KNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 118 ~~~iivv~nK~D~~~~-----------------~~~~~~~~~~~~-----~~~-~~~~~~~~~~Sa~~~~~v~~l~~~i~ 174 (182)
+.|+++++||.|+... .........+.. ... ....+..+.++|.+-.++..+|+.+.
T Consensus 251 ~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~ 330 (342)
T smart00275 251 NTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVK 330 (342)
T ss_pred CCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHH
Confidence 8999999999998421 011222222211 111 22456788899999999999999887
Q ss_pred HHHhc
Q 030120 175 NTLKS 179 (182)
Q Consensus 175 ~~~~~ 179 (182)
+.+..
T Consensus 331 ~~I~~ 335 (342)
T smart00275 331 DIILQ 335 (342)
T ss_pred HHHHH
Confidence 76643
|
Subunit of G proteins that contains the guanine nucleotide binding site |
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.5e-16 Score=114.46 Aligned_cols=78 Identities=27% Similarity=0.305 Sum_probs=54.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-c--cccccceeeEEE------------------------ECCEEEEEEECCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-T--IPTIGFNVETVQ------------------------YNNIKFQVWDLGG 70 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~--~~t~~~~~~~~~------------------------~~~~~~~~~D~~g 70 (182)
++|+++|.||+|||||+|++.+..... . ..|...+..... .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 589999999999999999999877543 2 223333333222 1236789999999
Q ss_pred CC----CCccc---hhhhcCCCCeEEEEEeCC
Q 030120 71 QT----SIRPY---WRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 71 ~~----~~~~~---~~~~~~~~d~ii~v~d~~ 95 (182)
.. ....+ ....++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 42 22222 233478999999999996
|
|
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.7e-16 Score=115.27 Aligned_cols=160 Identities=19% Similarity=0.177 Sum_probs=113.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC--cc-----c-----------ccccccceeeEEEE-----CCEEEEEEECCCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGE--VV-----S-----------TIPTIGFNVETVQY-----NNIKFQVWDLGGQ 71 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~--~~-----~-----------~~~t~~~~~~~~~~-----~~~~~~~~D~~g~ 71 (182)
++--+.+|+-+-..|||||..+++... .. . ..-|+......+.| +.+.+.++|||||
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 445678999999999999999996322 10 0 11133333333444 3478899999999
Q ss_pred CCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCC
Q 030120 72 TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNR 151 (182)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 151 (182)
-.|.-.....+..|.+.++++|++++---+.....+..+- .+.-++-|+||+||+.. +++.+...+... ....
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~A-dpervk~eIe~~-iGid 159 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAA-DPERVKQEIEDI-IGID 159 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCC-CHHHHHHHHHHH-hCCC
Confidence 9998888888899999999999999854444444555543 35779999999999765 343444433211 1222
Q ss_pred ceEEEEecCCCCCCHHHHHHHHHHHHhcCC
Q 030120 152 QWAIFKTCAIKGEGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 152 ~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~~ 181 (182)
....+.+||++|.|++++++.|++.++.+.
T Consensus 160 ~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 160 ASDAVLVSAKTGIGIEDVLEAIVEKIPPPK 189 (603)
T ss_pred cchheeEecccCCCHHHHHHHHHhhCCCCC
Confidence 334899999999999999999999998753
|
|
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.4e-16 Score=122.83 Aligned_cols=106 Identities=22% Similarity=0.204 Sum_probs=77.7
Q ss_pred EcCCCCCHHHHHHHHhcCCcc--------c-------------ccccccceeeEEEECCEEEEEEECCCCCCCccchhhh
Q 030120 23 LGLDNAGKTTILYRLQMGEVV--------S-------------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCY 81 (182)
Q Consensus 23 ~G~~~~GKssl~~~l~~~~~~--------~-------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 81 (182)
+|++|+|||||+++|+...-. . ...|+......+.+.+..+.+|||||+..+...+..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 599999999999999543210 0 1123344456677789999999999998887778888
Q ss_pred cCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 82 FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
+..+|++++|+|++++...... ..+..... .+.|+++|+||+|+...
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~----~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK----YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH----cCCCEEEEEECCCCCCC
Confidence 8999999999999987554332 23333222 46899999999998643
|
|
| >KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5e-17 Score=119.63 Aligned_cols=172 Identities=19% Similarity=0.221 Sum_probs=119.2
Q ss_pred HHhhhhc--CCCccEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECCEEEEEEECCCCCCCc----c-
Q 030120 7 RMFSSLF--GNKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSIR----P- 76 (182)
Q Consensus 7 ~~~~~~~--~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~----~- 76 (182)
+.+++.+ .++...++++|-||+|||||+|.+......- ..+|.......+.+...+|+++||||.-..- .
T Consensus 156 qhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~ 235 (620)
T KOG1490|consen 156 QHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNI 235 (620)
T ss_pred HHHhcCCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhH
Confidence 3455555 6788899999999999999999998766433 4445557778888889999999999943211 0
Q ss_pred ---chhh-hcCCCCeEEEEEeCCCc--ccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccC
Q 030120 77 ---YWRC-YFPNTEAVIYVVDSSDT--DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKN 150 (182)
Q Consensus 77 ---~~~~-~~~~~d~ii~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 150 (182)
.... ..+--.+|+|+.|++.. .|..+..+.+..+- ....+.|+|+|+||+|+...+...+-.+.+-......
T Consensus 236 IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIK--pLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~ 313 (620)
T KOG1490|consen 236 IEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIK--PLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDD 313 (620)
T ss_pred HHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhH--HHhcCCceEEEeecccccCccccCHHHHHHHHHHHhc
Confidence 0111 11223689999999864 56777777777763 2236899999999999965544322222221112233
Q ss_pred CceEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030120 151 RQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 151 ~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
.+++++++|+.+.+|+-++-...++.+..+
T Consensus 314 ~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~ 343 (620)
T KOG1490|consen 314 GNVKVVQTSCVQEEGVMDVRTTACEALLAA 343 (620)
T ss_pred cCceEEEecccchhceeeHHHHHHHHHHHH
Confidence 457899999999999988888777766543
|
|
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.8e-16 Score=113.29 Aligned_cols=159 Identities=19% Similarity=0.252 Sum_probs=117.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC--ccc-------ccc----------cccceeeEEEECCEEEEEEECCCCCCCccc
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE--VVS-------TIP----------TIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~--~~~-------~~~----------t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 77 (182)
--+|+|+-+...|||||+..|+.+. |.. ... |+-..-..+.|++.++.++|||||..|...
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 3579999999999999999998654 211 111 111222346778999999999999999999
Q ss_pred hhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCc---c--cccCCc
Q 030120 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALEL---H--KIKNRQ 152 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~---~--~~~~~~ 152 (182)
.+..++=.|++++++|+.++. ..+.+-.+.+.+.. +.+.|+|+||+|.......+.+.+.+.+ . ......
T Consensus 85 VERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~~----gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLd 159 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALAL----GLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLD 159 (603)
T ss_pred hhhhhhhcceEEEEEEcccCC-CCchhhhHHHHHHc----CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCC
Confidence 999999999999999998764 34555555555553 6777999999999776444333322221 1 113477
Q ss_pred eEEEEecCCCCC----------CHHHHHHHHHHHHhcC
Q 030120 153 WAIFKTCAIKGE----------GLFEGMDWLSNTLKSG 180 (182)
Q Consensus 153 ~~~~~~Sa~~~~----------~v~~l~~~i~~~~~~~ 180 (182)
+|++..|++.|+ ++.-||+.|+++++.+
T Consensus 160 FPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P 197 (603)
T COG1217 160 FPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAP 197 (603)
T ss_pred CcEEEeeccCceeccCccccccchhHHHHHHHHhCCCC
Confidence 899999999873 6899999999998865
|
|
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.8e-16 Score=110.04 Aligned_cols=112 Identities=18% Similarity=0.242 Sum_probs=70.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccc-----------cccccceee--EEEECC--EEEEEEECCCCCCCcc---c
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVST-----------IPTIGFNVE--TVQYNN--IKFQVWDLGGQTSIRP---Y 77 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~~-----------~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~---~ 77 (182)
-.++|+++|++|+|||||+|++++..+... .+|...... .+...+ .++.+|||||...... .
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 468999999999999999999998876542 223323222 233344 5789999999433211 0
Q ss_pred -----------------------hhhhcC--CCCeEEEEEeCCCcccHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCC
Q 030120 78 -----------------------WRCYFP--NTEAVIYVVDSSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 78 -----------------------~~~~~~--~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~ 131 (182)
....+. ++|+++|+++.+... .... .+.+..+ . ...|+++|+||+|+.
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l-~----~~v~vi~VinK~D~l 156 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRL-S----KRVNIIPVIAKADTL 156 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHH-h----ccCCEEEEEECCCcC
Confidence 001222 478999999887522 2222 2222222 2 258999999999996
Q ss_pred CC
Q 030120 132 GA 133 (182)
Q Consensus 132 ~~ 133 (182)
..
T Consensus 157 ~~ 158 (276)
T cd01850 157 TP 158 (276)
T ss_pred CH
Confidence 53
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.7e-16 Score=95.33 Aligned_cols=137 Identities=23% Similarity=0.271 Sum_probs=92.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCC----CCccchhhhcCCCCeEEEEEeC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQT----SIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
|++++|..|+|||||.+++-|....... |. -+++. +=-.+||||.- .+..........+|++++|-.+
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lykK-TQ-----Ave~~--d~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~a 74 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYKK-TQ-----AVEFN--DKGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAA 74 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhcc-cc-----eeecc--CccccCCchhhhhhhHHHHHHHHHhhccceeeeeecc
Confidence 7899999999999999999877643311 11 11111 11248999943 3333344556789999999999
Q ss_pred CCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHH
Q 030120 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 174 (182)
+++++. ....+. .....|+|=|++|+|+.++.........+.+.. .-++|.+|+.++.|++++++.+.
T Consensus 75 nd~~s~--f~p~f~------~~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaG----a~~IF~~s~~d~~gv~~l~~~L~ 142 (148)
T COG4917 75 NDPESR--FPPGFL------DIGVKKVIGVVTKADLAEDADISLVKRWLREAG----AEPIFETSAVDNQGVEELVDYLA 142 (148)
T ss_pred cCcccc--CCcccc------cccccceEEEEecccccchHhHHHHHHHHHHcC----CcceEEEeccCcccHHHHHHHHH
Confidence 998652 111111 113456999999999986544444444443332 34699999999999999999886
Q ss_pred H
Q 030120 175 N 175 (182)
Q Consensus 175 ~ 175 (182)
.
T Consensus 143 ~ 143 (148)
T COG4917 143 S 143 (148)
T ss_pred h
Confidence 5
|
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-15 Score=106.75 Aligned_cols=119 Identities=17% Similarity=0.115 Sum_probs=75.4
Q ss_pred EEEEEEECCCCCCCc---cchhh---hcCC--CCeEEEEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCC
Q 030120 61 IKFQVWDLGGQTSIR---PYWRC---YFPN--TEAVIYVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~---~~~~~---~~~~--~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~ 131 (182)
.++.+||+||+.... ..+.. .+.. .+++++++|+....+..... .++....... ..+.|+++|+||+|+.
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLL 175 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhc
Confidence 479999999976532 22222 2222 89999999997654333322 2222211111 1478999999999997
Q ss_pred CCCCHHHHHHHhCc-------------------------ccccCCceEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030120 132 GALDDAAVSEALEL-------------------------HKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 132 ~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
+....++....+.. ........+++++|++++.|+++++++|.+.++.+
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~~ 249 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCGG 249 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCCC
Confidence 65444443333321 00112335799999999999999999999988654
|
|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-15 Score=108.94 Aligned_cols=153 Identities=20% Similarity=0.188 Sum_probs=94.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC------Ccc--ccccccc-------------------ce-eeE----------
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMG------EVV--STIPTIG-------------------FN-VET---------- 55 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~------~~~--~~~~t~~-------------------~~-~~~---------- 55 (182)
..+.+.|+|.|++|+|||||++.+... .+. ...|+.. .. ...
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~ 132 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGG 132 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccc
Confidence 467889999999999999999987421 110 0111000 00 000
Q ss_pred -----------EEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEE
Q 030120 56 -----------VQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIF 124 (182)
Q Consensus 56 -----------~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv 124 (182)
+...+.++.++||+|....... ....+|.++++.++..++.+...... ++ ....++|
T Consensus 133 ~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~g---i~------E~aDIiV 200 (332)
T PRK09435 133 VARKTRETMLLCEAAGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKKG---IM------ELADLIV 200 (332)
T ss_pred hHHHHHHHHHHHhccCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHhh---hh------hhhheEE
Confidence 0113679999999997633322 45679999999876655444443321 21 1224899
Q ss_pred EeCCCCCCCCCHHH----HHHHhCccccc--CCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 030120 125 ANKQDLPGALDDAA----VSEALELHKIK--NRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 125 ~nK~D~~~~~~~~~----~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
+||+|+.+...... +...+...... ....+++.+||+++.|++++++.|.+.++
T Consensus 201 VNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 201 INKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred eehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 99999875433222 22222221111 12247999999999999999999998754
|
|
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.2e-15 Score=101.72 Aligned_cols=142 Identities=16% Similarity=0.079 Sum_probs=87.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
......|+++|.+|+|||||++.+.+..-.. .....+. .......+.++.++||||.. .......+.+|++++++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvVllvi 111 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDI---NAMIDIAKVADLVLLLI 111 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchH---HHHHHHHHhcCEEEEEE
Confidence 4566789999999999999999998653221 1111111 11222367889999999853 22334468899999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeE-EEEEeCCCCCCCCC-HHHHHHHhCcccc--cCCceEEEEecCCCCC
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVA-LIFANKQDLPGALD-DAAVSEALELHKI--KNRQWAIFKTCAIKGE 164 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~i-ivv~nK~D~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~ 164 (182)
|+..+..... ..+...+.. .+.|. ++|+||+|+.+... ..++...+..... ...+.+++.+||++.-
T Consensus 112 Da~~~~~~~~--~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 112 DASFGFEMET--FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred ecCcCCCHHH--HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 9987643222 222333332 34564 55999999864322 2233333322111 2345689999999874
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.4e-15 Score=106.26 Aligned_cols=135 Identities=25% Similarity=0.407 Sum_probs=104.0
Q ss_pred ccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcc----------cHHHHHHHHHHHHhcc
Q 030120 45 TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD----------RIQTAKEEFHAILEEE 114 (182)
Q Consensus 45 ~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~----------s~~~~~~~~~~~~~~~ 114 (182)
..+|+|+....+.+++.++.++|++||..-+.-|.+++.+++++|||+++++.+ ++..+...+..+....
T Consensus 179 R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~ 258 (354)
T KOG0082|consen 179 RVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNK 258 (354)
T ss_pred ccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCc
Confidence 345778888888999999999999999999999999999999999999998533 4667778888888888
Q ss_pred ccCCCeEEEEEeCCCCCCC-----------------CCHHHHHHHhCc-----ccccCCceEEEEecCCCCCCHHHHHHH
Q 030120 115 ELKGAVALIFANKQDLPGA-----------------LDDAAVSEALEL-----HKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 115 ~~~~~~iivv~nK~D~~~~-----------------~~~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 172 (182)
+..+.++|+++||.|+.++ ...++...++.. .......+.+..+.|.+-.+|+.+|+.
T Consensus 259 ~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~a 338 (354)
T KOG0082|consen 259 WFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDA 338 (354)
T ss_pred ccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHH
Confidence 8889999999999998432 011222222211 111124566777889999999999999
Q ss_pred HHHHHhc
Q 030120 173 LSNTLKS 179 (182)
Q Consensus 173 i~~~~~~ 179 (182)
+.+.+..
T Consensus 339 v~d~Ii~ 345 (354)
T KOG0082|consen 339 VTDTIIQ 345 (354)
T ss_pred HHHHHHH
Confidence 8887654
|
|
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-15 Score=107.12 Aligned_cols=163 Identities=14% Similarity=0.055 Sum_probs=111.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccc------cccccceeeE--------------------EEE------CCEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVST------IPTIGFNVET--------------------VQY------NNIK 62 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~------~~t~~~~~~~--------------------~~~------~~~~ 62 (182)
+..++|+++|+...|||||..++.+-..... .-|+...+.. ... --..
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 6789999999999999999999976432110 0011000000 000 0247
Q ss_pred EEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH----HH
Q 030120 63 FQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD----AA 138 (182)
Q Consensus 63 ~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~----~~ 138 (182)
+.|+|.|||+.+-..+.+...-.|+.++|++++.+....+..+.+..+- -.+ -..++++-||+|+...+.. ++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Ale-Iig--ik~iiIvQNKIDlV~~E~AlE~y~q 164 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALE-IIG--IKNIIIVQNKIDLVSRERALENYEQ 164 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHh-hhc--cceEEEEecccceecHHHHHHHHHH
Confidence 8899999998776666655566799999999998877666666655542 222 2568999999999754322 22
Q ss_pred HHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHHHHhcCCC
Q 030120 139 VSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSGGS 182 (182)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~~~ 182 (182)
+.+.++-- ...+.|++++||.++.|++.+++.|.+.++...|
T Consensus 165 Ik~FvkGt--~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~r 206 (415)
T COG5257 165 IKEFVKGT--VAENAPIIPISAQHKANIDALIEAIEKYIPTPER 206 (415)
T ss_pred HHHHhccc--ccCCCceeeehhhhccCHHHHHHHHHHhCCCCcc
Confidence 22222211 2356789999999999999999999999886643
|
|
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.9e-15 Score=102.98 Aligned_cols=116 Identities=15% Similarity=0.041 Sum_probs=61.8
Q ss_pred EEEEEECCCCCCCccchhhhc--------CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 62 KFQVWDLGGQTSIRPYWRCYF--------PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 62 ~~~~~D~~g~~~~~~~~~~~~--------~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
.+.++|||||.++...+.... ...-++++++|.....+.......+...+......+.|.+.|+||+|+.+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 899999999987765554333 345688999998754332222222111111122247999999999999762
Q ss_pred CCH--------------------HHHHHHhCcccccCCce-EEEEecCCCCCCHHHHHHHHHHHH
Q 030120 134 LDD--------------------AAVSEALELHKIKNRQW-AIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 134 ~~~--------------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~i~~~~ 177 (182)
... ..+...+.......... .++++|+.+++++++++..+.+.+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 111 11112222222223344 799999999999999999988764
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.1e-14 Score=114.69 Aligned_cols=143 Identities=20% Similarity=0.147 Sum_probs=91.0
Q ss_pred CCHHHHHHHHhcCCcccc---cccccceeeEEEEC------------------CEEEEEEECCCCCCCccchhhhcCCCC
Q 030120 28 AGKTTILYRLQMGEVVST---IPTIGFNVETVQYN------------------NIKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 28 ~GKssl~~~l~~~~~~~~---~~t~~~~~~~~~~~------------------~~~~~~~D~~g~~~~~~~~~~~~~~~d 86 (182)
++||||+.++.+-..... .-|..+....+..+ ...+.+|||||++.+..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 459999999987776541 11333332223221 123899999999999887777888899
Q ss_pred eEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--------------HHHHHHHh---------
Q 030120 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--------------DAAVSEAL--------- 143 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--------------~~~~~~~~--------- 143 (182)
++++|+|++++...+ ....+. .+.. .+.|+++|+||+|+..... .+.....+
T Consensus 552 ivlLVVDa~~Gi~~q-T~e~I~-~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~ 626 (1049)
T PRK14845 552 LAVLVVDINEGFKPQ-TIEAIN-ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIG 626 (1049)
T ss_pred EEEEEEECcccCCHh-HHHHHH-HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhh
Confidence 999999998753211 111222 2222 3689999999999953211 01111111
Q ss_pred --Cccc----------ccCCceEEEEecCCCCCCHHHHHHHHHH
Q 030120 144 --ELHK----------IKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 144 --~~~~----------~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 175 (182)
.... .-....+++++||++|+|+++|...|..
T Consensus 627 ~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~ 670 (1049)
T PRK14845 627 KLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAG 670 (1049)
T ss_pred HHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 1110 0124578999999999999999988754
|
|
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.6e-15 Score=116.44 Aligned_cols=121 Identities=18% Similarity=0.105 Sum_probs=82.7
Q ss_pred HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcC---------------Cccc----ccccccceee----EEEECCE
Q 030120 5 FSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMG---------------EVVS----TIPTIGFNVE----TVQYNNI 61 (182)
Q Consensus 5 ~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~---------------~~~~----~~~t~~~~~~----~~~~~~~ 61 (182)
+.++++. ..+..+|+++|+.++|||||+++|+.. .+.. ...|+..... .+.+.+.
T Consensus 9 ~~~~~~~--~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~ 86 (720)
T TIGR00490 9 IKELMWK--PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEY 86 (720)
T ss_pred HHHHhhC--cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCce
Confidence 3444442 356789999999999999999999742 1111 1113222211 2344678
Q ss_pred EEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030120 62 KFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 62 ~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
.+.+|||||+..+.......++.+|++++|+|+.++..... ...+..... .+.|.++++||+|...
T Consensus 87 ~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~~----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 87 LINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQALK----ENVKPVLFINKVDRLI 152 (720)
T ss_pred EEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHHH----cCCCEEEEEEChhccc
Confidence 99999999999988888889999999999999987643222 222222222 3578899999999853
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.3e-14 Score=97.85 Aligned_cols=165 Identities=19% Similarity=0.176 Sum_probs=99.9
Q ss_pred hhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc--------ccc---------ccc-----------------ceeeEE
Q 030120 11 SLFGNKEARILVLGLDNAGKTTILYRLQMGEVVS--------TIP---------TIG-----------------FNVETV 56 (182)
Q Consensus 11 ~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--------~~~---------t~~-----------------~~~~~~ 56 (182)
++..++..-|+++|..|+|||||+.+|...-... ..| .++ ++-..+
T Consensus 13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~ 92 (366)
T KOG1532|consen 13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIV 92 (366)
T ss_pred cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchh
Confidence 4456788899999999999999999995321111 111 000 000000
Q ss_pred -------------------EECCEEEEEEECCCCCCC------ccchhhh--cCCCCeEEEEEeCCCc---ccHHHHHHH
Q 030120 57 -------------------QYNNIKFQVWDLGGQTSI------RPYWRCY--FPNTEAVIYVVDSSDT---DRIQTAKEE 106 (182)
Q Consensus 57 -------------------~~~~~~~~~~D~~g~~~~------~~~~~~~--~~~~d~ii~v~d~~~~---~s~~~~~~~ 106 (182)
.....++.++|||||-.. ....-.. ....-+++|++|.... -+|....-+
T Consensus 93 TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlY 172 (366)
T KOG1532|consen 93 TSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLY 172 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHH
Confidence 002357899999996432 1111111 1335788999998543 344444444
Q ss_pred HHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHh-------Ccccc----------------cCCceEEEEecCCCC
Q 030120 107 FHAILEEEELKGAVALIFANKQDLPGALDDAAVSEAL-------ELHKI----------------KNRQWAIFKTCAIKG 163 (182)
Q Consensus 107 ~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~-------~~~~~----------------~~~~~~~~~~Sa~~~ 163 (182)
.-.++.. .+.|.+++.||+|+.+.....+....+ ..... -......+-+|+.+|
T Consensus 173 AcSilyk---tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG 249 (366)
T KOG1532|consen 173 ACSILYK---TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTG 249 (366)
T ss_pred HHHHHHh---ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccC
Confidence 4444443 679999999999998764432222211 11000 014567899999999
Q ss_pred CCHHHHHHHHHHHHh
Q 030120 164 EGLFEGMDWLSNTLK 178 (182)
Q Consensus 164 ~~v~~l~~~i~~~~~ 178 (182)
.|.+++|..+.+.+.
T Consensus 250 ~G~ddf~~av~~~vd 264 (366)
T KOG1532|consen 250 EGFDDFFTAVDESVD 264 (366)
T ss_pred CcHHHHHHHHHHHHH
Confidence 999999999887654
|
|
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.2e-14 Score=98.06 Aligned_cols=118 Identities=14% Similarity=0.112 Sum_probs=75.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc----cccccceeeEEEECCEEEEEEECCCCCCCcc---c-------hh
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVST----IPTIGFNVETVQYNNIKFQVWDLGGQTSIRP---Y-------WR 79 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~-------~~ 79 (182)
....++|+++|.+|+|||||+|++++...... ..|...........+.++.+|||||...... . ..
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~ 107 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIK 107 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHH
Confidence 46789999999999999999999999875431 2233334444556788999999999664421 1 12
Q ss_pred hhcC--CCCeEEEEEeCCCcc-cHH--HHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 80 CYFP--NTEAVIYVVDSSDTD-RIQ--TAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 80 ~~~~--~~d~ii~v~d~~~~~-s~~--~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
.++. ..|+++||..++... +.. ...+.+.+.+... --.++++|.||+|...+
T Consensus 108 ~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~--i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 108 RYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPS--IWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChh--hHhCEEEEEeCCccCCC
Confidence 2332 578888887665432 111 2233333332211 11469999999998644
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-14 Score=101.78 Aligned_cols=149 Identities=16% Similarity=0.160 Sum_probs=100.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc------------------------------------cccccccceeeEEEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVV------------------------------------STIPTIGFNVETVQY 58 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~------------------------------------~~~~t~~~~~~~~~~ 58 (182)
...++++.+|+..-||||||-+|+...-. +..-|+++.+..+.-
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 45689999999999999999999733200 011134444444444
Q ss_pred CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH--
Q 030120 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-- 136 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-- 136 (182)
.+.+|.+.|||||++|...+...-.-||+.|+++|+..+ ..........+....+ =+.+++.+||+||.+....
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G--vl~QTrRHs~I~sLLG--IrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG--VLEQTRRHSFIASLLG--IRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh--hHHHhHHHHHHHHHhC--CcEEEEEEeeecccccCHHHH
Confidence 789999999999999998888888999999999999766 2222222222222222 2578999999999865332
Q ss_pred HHHHHHhC-c-ccccCCceEEEEecCCCCCCHH
Q 030120 137 AAVSEALE-L-HKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 137 ~~~~~~~~-~-~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+++...+. . .........++++||+.|.|+-
T Consensus 160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 22222221 1 1112344579999999998764
|
|
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-14 Score=104.58 Aligned_cols=160 Identities=14% Similarity=0.130 Sum_probs=84.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc--ccc----cccceeeEEEE-CCEEEEEEECCCCCCCccchhhh-----c
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS--TIP----TIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCY-----F 82 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~----t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~-----~ 82 (182)
...++|+|+|.+|+|||||||+|.|-.... ..+ .++.....+.. ..-++.+||.||..........| +
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 567899999999999999999997633221 111 11223333333 33569999999965544444443 4
Q ss_pred CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC-------C--CCCH----HHHHHHhCc--cc
Q 030120 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP-------G--ALDD----AAVSEALEL--HK 147 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~-------~--~~~~----~~~~~~~~~--~~ 147 (182)
...|.+|++.+-. |....-++...+.. .++|+++|-||+|.. . .-.. +++.+.... ..
T Consensus 113 ~~yD~fiii~s~r----f~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k 185 (376)
T PF05049_consen 113 YRYDFFIIISSER----FTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK 185 (376)
T ss_dssp GG-SEEEEEESSS------HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC
T ss_pred cccCEEEEEeCCC----CchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH
Confidence 5679888876543 44444444433333 579999999999961 0 1111 222222111 11
Q ss_pred ccCCceEEEEecCCCC--CCHHHHHHHHHHHHhcCC
Q 030120 148 IKNRQWAIFKTCAIKG--EGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 148 ~~~~~~~~~~~Sa~~~--~~v~~l~~~i~~~~~~~~ 181 (182)
......++|.+|+.+- +++..|.+.|.+.++..+
T Consensus 186 ~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K 221 (376)
T PF05049_consen 186 AGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK 221 (376)
T ss_dssp TT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred cCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence 1234457999998874 568899999998887654
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-14 Score=98.58 Aligned_cols=159 Identities=15% Similarity=0.060 Sum_probs=92.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccc-----cccccceeeEEEECCEEEEEEECCCCCCCccc-------h----hhh
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVST-----IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY-------W----RCY 81 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------~----~~~ 81 (182)
++|+++|.+|+||||++|.+++...... ..|.........+.+..+.++||||-...... . ...
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 4899999999999999999999885442 22455666666789999999999994322111 1 123
Q ss_pred cCCCCeEEEEEeCCCccc--HHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHH-----HhCcccccCCceE
Q 030120 82 FPNTEAVIYVVDSSDTDR--IQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSE-----ALELHKIKNRQWA 154 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~-----~~~~~~~~~~~~~ 154 (182)
....|++++|+++. ..+ .....+++..++.... -..++|+.|..|.......++... .+.... ...+-.
T Consensus 81 ~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~--~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li-~~c~~R 156 (212)
T PF04548_consen 81 SPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEI--WKHTIVVFTHADELEDDSLEDYLKKESNEALQELI-EKCGGR 156 (212)
T ss_dssp TT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGG--GGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHH-HHTTTC
T ss_pred cCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHH--HhHhhHHhhhccccccccHHHHHhccCchhHhHHh-hhcCCE
Confidence 45689999999998 322 2233344444443221 135888889888765544322222 111111 111223
Q ss_pred EEEecCC------CCCCHHHHHHHHHHHHhcC
Q 030120 155 IFKTCAI------KGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 155 ~~~~Sa~------~~~~v~~l~~~i~~~~~~~ 180 (182)
+...+.+ ....+.+|++.+-+.+.++
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 5555544 2345788888887776654
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-13 Score=98.17 Aligned_cols=117 Identities=9% Similarity=0.139 Sum_probs=73.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc--cccc--ccceeeEEEECCEEEEEEECCCCCCCccc-------hhhhc
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS--TIPT--IGFNVETVQYNNIKFQVWDLGGQTSIRPY-------WRCYF 82 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t--~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------~~~~~ 82 (182)
..+.++|+++|.+|+||||++|+++++.... ..++ ...........+.++.++||||....... ...++
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l 114 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFL 114 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence 3578899999999999999999999987532 2222 22222334457889999999997654221 11111
Q ss_pred --CCCCeEEEEEeCCCccc--H-HHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030120 83 --PNTEAVIYVVDSSDTDR--I-QTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 83 --~~~d~ii~v~d~~~~~s--~-~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
...|+++||..++.... . ....+.+...+... --.+.++++|++|..+
T Consensus 115 ~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~--iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 115 LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKD--IWRKSLVVLTHAQFSP 167 (313)
T ss_pred hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhh--hhccEEEEEECCccCC
Confidence 25899999966543211 1 22222333332211 1246899999999764
|
|
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=8e-14 Score=111.24 Aligned_cols=113 Identities=18% Similarity=0.125 Sum_probs=78.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc--c----------cc-------ccccceeeEEEE----CCEEEEEEECCC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVV--S----------TI-------PTIGFNVETVQY----NNIKFQVWDLGG 70 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~--~----------~~-------~t~~~~~~~~~~----~~~~~~~~D~~g 70 (182)
.++..+|+++|+.++|||||+++++...-. . .. -|+......+.+ .+..+.++||||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 96 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG 96 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence 356678999999999999999999753211 0 00 012222222333 467889999999
Q ss_pred CCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q 030120 71 QTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 71 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 131 (182)
+..+.......++.+|++++|+|+..+... .....+..... .+.|.++++||+|+.
T Consensus 97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~-~t~~~~~~~~~----~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMP-QTETVLRQALR----ERVKPVLFINKVDRL 152 (731)
T ss_pred ccChHHHHHHHHHhcCEEEEEEECCCCCCc-cHHHHHHHHHH----cCCCeEEEEECchhh
Confidence 999988888889999999999999876432 22333333322 246789999999975
|
|
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-13 Score=100.73 Aligned_cols=114 Identities=18% Similarity=0.261 Sum_probs=84.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHh--cCCc---------------ccccc--------cccceeeEEEECCEEEEEEECC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQ--MGEV---------------VSTIP--------TIGFNVETVQYNNIKFQVWDLG 69 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~--~~~~---------------~~~~~--------t~~~~~~~~~~~~~~~~~~D~~ 69 (182)
.++-..+|+-+|.+|||||...|+ ++-+ .+++- ++......++|.+..+.+.|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 355678999999999999999985 1111 01111 2223445567789999999999
Q ss_pred CCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 70 GQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
||+.+..-+...+.-+|.+++|+|+..+ ++.....+.++.+. .++|++-++||.|....
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKG--iE~qT~KLfeVcrl---R~iPI~TFiNKlDR~~r 148 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKG--IEPQTLKLFEVCRL---RDIPIFTFINKLDREGR 148 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccC--ccHHHHHHHHHHhh---cCCceEEEeeccccccC
Confidence 9999999888889999999999999987 33433333344333 58999999999998654
|
|
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.4e-14 Score=101.89 Aligned_cols=154 Identities=20% Similarity=0.099 Sum_probs=110.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc------ccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
-|+..|+-..|||||+..+.+..-.. ...|++..+...+..+..+.++|+||++++-..........|..++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 47788999999999999998765322 334555666666667779999999999999988888888999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 172 (182)
+++++-. ........++...+ ....++|+||+|..+....++....+..... ....++|.+|+.+|+|+++|.+.
T Consensus 82 ~~deGl~--~qtgEhL~iLdllg--i~~giivltk~D~~d~~r~e~~i~~Il~~l~-l~~~~i~~~s~~~g~GI~~Lk~~ 156 (447)
T COG3276 82 AADEGLM--AQTGEHLLILDLLG--IKNGIIVLTKADRVDEARIEQKIKQILADLS-LANAKIFKTSAKTGRGIEELKNE 156 (447)
T ss_pred eCccCcc--hhhHHHHHHHHhcC--CCceEEEEeccccccHHHHHHHHHHHHhhcc-cccccccccccccCCCHHHHHHH
Confidence 9976632 22222222333322 3456999999999765333333332221111 45567899999999999999999
Q ss_pred HHHHH
Q 030120 173 LSNTL 177 (182)
Q Consensus 173 i~~~~ 177 (182)
|.+..
T Consensus 157 l~~L~ 161 (447)
T COG3276 157 LIDLL 161 (447)
T ss_pred HHHhh
Confidence 99876
|
|
| >KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-13 Score=96.93 Aligned_cols=163 Identities=18% Similarity=0.176 Sum_probs=102.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc---ccc-------cccceeeEEEE---------CCEEEEEEECCCCCCC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS---TIP-------TIGFNVETVQY---------NNIKFQVWDLGGQTSI 74 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~-------t~~~~~~~~~~---------~~~~~~~~D~~g~~~~ 74 (182)
.+.+++++++|...+|||+|.+++..-.... ..| |.+.....+.+ +...+.++|+|||..+
T Consensus 4 ~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL 83 (522)
T KOG0461|consen 4 PPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL 83 (522)
T ss_pred CCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH
Confidence 4567999999999999999999996432111 111 11111111211 3457799999999888
Q ss_pred ccchhhhcCCCCeEEEEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCCCCH----HHHHHHhC--ccc
Q 030120 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDD----AAVSEALE--LHK 147 (182)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~----~~~~~~~~--~~~ 147 (182)
.........-.|..++|+|+..+.--+... ..+-++ .-...++|+||+|+..+... ++....++ ...
T Consensus 84 IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~------~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~ 157 (522)
T KOG0461|consen 84 IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL------LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLES 157 (522)
T ss_pred HHHHHhhhheeeeeeEEEehhcccccccchhhhhhhh------hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHh
Confidence 777776677789999999998663222221 111222 12457899999998654322 11111111 111
Q ss_pred cc-CCceEEEEecCCCC----CCHHHHHHHHHHHHhcCCC
Q 030120 148 IK-NRQWAIFKTCAIKG----EGLFEGMDWLSNTLKSGGS 182 (182)
Q Consensus 148 ~~-~~~~~~~~~Sa~~~----~~v~~l~~~i~~~~~~~~~ 182 (182)
.. ..+.|++++||..| +++.++.+.+.+.+-++.|
T Consensus 158 t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~R 197 (522)
T KOG0461|consen 158 TGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKR 197 (522)
T ss_pred cCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCc
Confidence 11 23478999999999 7888888888887765543
|
|
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.3e-14 Score=98.57 Aligned_cols=159 Identities=21% Similarity=0.264 Sum_probs=95.4
Q ss_pred hHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhc------CCc--cccccccc---------------------ceee
Q 030120 4 MFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQM------GEV--VSTIPTIG---------------------FNVE 54 (182)
Q Consensus 4 ~~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~------~~~--~~~~~t~~---------------------~~~~ 54 (182)
+++++++. ..+.+.|+|.|+||+|||||++.|.. ..+ ....|+.. ....
T Consensus 18 ll~~l~~~--~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIR 95 (266)
T PF03308_consen 18 LLKRLYPH--TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIR 95 (266)
T ss_dssp HHHHHGGG--TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEE
T ss_pred HHHHHHhh--cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEe
Confidence 34444442 35788999999999999999999952 111 01111111 1111
Q ss_pred EEEE--------------------CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhcc
Q 030120 55 TVQY--------------------NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEE 114 (182)
Q Consensus 55 ~~~~--------------------~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~ 114 (182)
.+-- .++++.+++|.|--+... ....-+|.+++|..+.-++..+....-+.++.
T Consensus 96 S~atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia--- 169 (266)
T PF03308_consen 96 SMATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAGIMEIA--- 169 (266)
T ss_dssp EE---SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH----
T ss_pred ecCcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhhhhhhc---
Confidence 1111 267999999998544332 23466899999999998887777776666652
Q ss_pred ccCCCeEEEEEeCCCCCCCC-CHHHHHHHhCccc--ccCCceEEEEecCCCCCCHHHHHHHHHHH
Q 030120 115 ELKGAVALIFANKQDLPGAL-DDAAVSEALELHK--IKNRQWAIFKTCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 115 ~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 176 (182)
-++|+||+|..... ...++...+.... ......+++.+||.++.|++++++.|.++
T Consensus 170 ------Di~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 170 ------DIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp ------SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred ------cEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 39999999953221 1133333333222 22344689999999999999999999875
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.1e-14 Score=96.61 Aligned_cols=164 Identities=18% Similarity=0.164 Sum_probs=111.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC----------ccc-------ccccccceeeEEEE--CCEEEEEEECCCCCCCc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGE----------VVS-------TIPTIGFNVETVQY--NNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~----------~~~-------~~~t~~~~~~~~~~--~~~~~~~~D~~g~~~~~ 75 (182)
...++|+.+|..+.|||||..++...- +.+ ....+.++...+.| .+..+..+|+|||.+|-
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv 89 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence 567899999999999999988884211 111 11133344455555 67889999999999998
Q ss_pred cchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH-----HHHHHHhCcccccC
Q 030120 76 PYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-----AAVSEALELHKIKN 150 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-----~~~~~~~~~~~~~~ 150 (182)
......-.+.|+.|+|+++.++.- .+.++.+.-. ++. .-..+++++||+|+.++.+. .++.+.+.......
T Consensus 90 KNMItgAaqmDgAILVVsA~dGpm-PqTrEHiLla-rqv--Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~g 165 (394)
T COG0050 90 KNMITGAAQMDGAILVVAATDGPM-PQTREHILLA-RQV--GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPG 165 (394)
T ss_pred HHHhhhHHhcCccEEEEEcCCCCC-Ccchhhhhhh-hhc--CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCC
Confidence 877777788999999999998742 2222222111 221 12368899999999875332 34445555555566
Q ss_pred CceEEEEecCCCCC--------CHHHHHHHHHHHHhcCCC
Q 030120 151 RQWAIFKTCAIKGE--------GLFEGMDWLSNTLKSGGS 182 (182)
Q Consensus 151 ~~~~~~~~Sa~~~~--------~v~~l~~~i~~~~~~~~~ 182 (182)
...|++.-||+..- .+.+|++.+.+.++.+.|
T Consensus 166 d~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per 205 (394)
T COG0050 166 DDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPER 205 (394)
T ss_pred CCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCC
Confidence 77889998887642 367888888887776543
|
|
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.3e-14 Score=112.79 Aligned_cols=113 Identities=19% Similarity=0.157 Sum_probs=81.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc------------c-------ccccccceeeEEEE----------------
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVV------------S-------TIPTIGFNVETVQY---------------- 58 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~------------~-------~~~t~~~~~~~~~~---------------- 58 (182)
.++..+|+|+|+.++|||||+++|+...-. . ...|.......+.+
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 567789999999999999999999754311 0 00011111222333
Q ss_pred CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q 030120 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 131 (182)
.+..+.++|||||..+.......++.+|++++|+|+..+-.... ...+..... .++|+++++||+|+.
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHH----CCCCEEEEEECCccc
Confidence 25678999999999998888888999999999999998743332 233333333 478999999999986
|
|
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.9e-13 Score=89.52 Aligned_cols=104 Identities=19% Similarity=0.237 Sum_probs=65.5
Q ss_pred CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHH
Q 030120 60 NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDA 137 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~ 137 (182)
..+..++++.|..-...... .-+|.++.|+|+.+.++... .....+ ...-++++||+|+.+. ....
T Consensus 91 ~~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~qi-------~~ad~~~~~k~d~~~~~~~~~~ 158 (199)
T TIGR00101 91 PLEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGPGI-------TRSDLLVINKIDLAPMVGADLG 158 (199)
T ss_pred CCCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHhHh-------hhccEEEEEhhhccccccccHH
Confidence 35677888888432222222 12588999999998755321 111111 1234899999999753 2233
Q ss_pred HHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 030120 138 AVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
.+.+..... ....+++++||++|+|++++++++.+++.
T Consensus 159 ~~~~~~~~~---~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 159 VMERDAKKM---RGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 333333322 34567999999999999999999998653
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.6e-13 Score=98.58 Aligned_cols=81 Identities=20% Similarity=0.270 Sum_probs=58.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEEC-----------------CEEEEEEECCCCCC-
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYN-----------------NIKFQVWDLGGQTS- 73 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~-----------------~~~~~~~D~~g~~~- 73 (182)
.+.++|+++|.||+|||||+|++.+..... ...|...+...+.+. ...+.++||||...
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 677899999999999999999998766433 233445666666553 23589999999432
Q ss_pred ------CccchhhhcCCCCeEEEEEeCC
Q 030120 74 ------IRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 74 ------~~~~~~~~~~~~d~ii~v~d~~ 95 (182)
........++.+|++++|+|..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1222344567899999999983
|
|
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-13 Score=111.35 Aligned_cols=113 Identities=19% Similarity=0.193 Sum_probs=80.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc--c--c---------------cccccceeeEEEEC----------CEEEE
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVV--S--T---------------IPTIGFNVETVQYN----------NIKFQ 64 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~--~--~---------------~~t~~~~~~~~~~~----------~~~~~ 64 (182)
.++..+|+++|+.++|||||+++|+...-. . . ..|+......+.+. +..+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 356679999999999999999999863210 0 0 00111111223332 56789
Q ss_pred EEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q 030120 65 VWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 65 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 131 (182)
++||||+..+.......++.+|++++|+|+..+-..+ ....+..+.. .+.|+++++||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ-TETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHHH----cCCCEEEEEEChhhh
Confidence 9999999999888888899999999999998874333 2333343333 368999999999986
|
|
| >KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.4e-13 Score=101.31 Aligned_cols=154 Identities=19% Similarity=0.190 Sum_probs=101.5
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCC----------------------cc--c----------ccccccceeeEEEE
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGE----------------------VV--S----------TIPTIGFNVETVQY 58 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~----------------------~~--~----------~~~t~~~~~~~~~~ 58 (182)
.+...++++++|..++|||||+.+++..- +. - ..-|.......++-
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 34578899999999999999999996211 00 0 00011122222333
Q ss_pred CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCccc---H--HHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR---I--QTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~--~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
....+.+.|.|||..|...+......+|+.++|+|++...= | .........+++..+ -..++|++||.|+.++
T Consensus 253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~W 330 (603)
T KOG0458|consen 253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLVSW 330 (603)
T ss_pred CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEEeecccccCc
Confidence 66789999999999998888888899999999999985431 1 111222333344433 3568999999999776
Q ss_pred CCH--HHHH----HHh-CcccccCCceEEEEecCCCCCCHHH
Q 030120 134 LDD--AAVS----EAL-ELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 134 ~~~--~~~~----~~~-~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
... +++. ..+ ....+....+.+++||+.+|+|+-.
T Consensus 331 sq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 331 SQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred cHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 432 2222 222 3344455667899999999998654
|
|
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-12 Score=91.87 Aligned_cols=153 Identities=22% Similarity=0.227 Sum_probs=101.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC------c--ccccccccceee---------------------EE--------
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGE------V--VSTIPTIGFNVE---------------------TV-------- 56 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~------~--~~~~~t~~~~~~---------------------~~-------- 56 (182)
..+...|+|.|.||+|||||+..|...- + ....|+..+.-. .+
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGG 127 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGG 127 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchh
Confidence 3567799999999999999999995321 0 111221111110 00
Q ss_pred ------------EECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEE
Q 030120 57 ------------QYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIF 124 (182)
Q Consensus 57 ------------~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv 124 (182)
+-.++++.|++|.|--+.... ...-+|.++++.-+.-++..+....-+.++- -++|
T Consensus 128 lS~at~~~i~~ldAaG~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia---------Di~v 195 (323)
T COG1703 128 LSRATREAIKLLDAAGYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIKAGIMEIA---------DIIV 195 (323)
T ss_pred hhHHHHHHHHHHHhcCCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHHhhhhhhh---------heee
Confidence 002679999999985544432 3355899999999888877777777666663 3999
Q ss_pred EeCCCCCCCC-CHHHHHHHhCcc----cccCCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 030120 125 ANKQDLPGAL-DDAAVSEALELH----KIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 125 ~nK~D~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
+||.|..... ...++...+... .......+++.+||.+|+|++++++.+.++..
T Consensus 196 INKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 196 INKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred EeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 9999964321 112333333222 23345668999999999999999999988653
|
|
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.8e-13 Score=88.05 Aligned_cols=64 Identities=19% Similarity=0.240 Sum_probs=44.0
Q ss_pred EEEEEEECCCCCC----CccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCC
Q 030120 61 IKFQVWDLGGQTS----IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQ 128 (182)
Q Consensus 61 ~~~~~~D~~g~~~----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~ 128 (182)
..+.++||||... ....+..++..+|+++||.++++..+-.....+.... .. .....++|.||+
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~-~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQML-DP---DKSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHH-TT---TCSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHh-cC---CCCeEEEEEcCC
Confidence 4688999999533 2356778889999999999999976544444333333 22 234589999985
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.6e-13 Score=95.77 Aligned_cols=107 Identities=15% Similarity=0.094 Sum_probs=65.8
Q ss_pred CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHH
Q 030120 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAA 138 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~ 138 (182)
.+.++.++||+|..... ......+|.++++.....++ ........+ .++|.++++||+|+........
T Consensus 125 ~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~---el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~ 192 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGD---DLQGIKAGL------MEIADIYVVNKADGEGATNVTI 192 (300)
T ss_pred CCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccH---HHHHHHHHH------hhhccEEEEEcccccchhHHHH
Confidence 36789999999854222 23456778888886554332 222222222 3567899999999975432211
Q ss_pred HHHH----hCcccc--cCCceEEEEecCCCCCCHHHHHHHHHHHH
Q 030120 139 VSEA----LELHKI--KNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 139 ~~~~----~~~~~~--~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 177 (182)
.... +..... .....+++++||+++.|++++++++.+.+
T Consensus 193 ~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 193 ARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred HHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 1111 111111 12223689999999999999999998864
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.8e-13 Score=91.66 Aligned_cols=151 Identities=16% Similarity=0.150 Sum_probs=87.8
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCc---c-c---ccc--ccc--------ceeeEE------------------
Q 030120 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEV---V-S---TIP--TIG--------FNVETV------------------ 56 (182)
Q Consensus 12 ~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~---~-~---~~~--t~~--------~~~~~~------------------ 56 (182)
........++++|..|+|||||+++++.... . . ... ..+ .....+
T Consensus 17 ~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~ 96 (207)
T TIGR00073 17 LDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALE 96 (207)
T ss_pred hhhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHH
Confidence 3445677889999999999999999974310 0 0 000 000 000000
Q ss_pred --EECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC
Q 030120 57 --QYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL 134 (182)
Q Consensus 57 --~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 134 (182)
...+.++.+++|.|.-.... .+....+..+.++|+.+.+.... . .... ...|.++++||+|+.+..
T Consensus 97 ~~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~--~-~~~~------~~~a~iiv~NK~Dl~~~~ 164 (207)
T TIGR00073 97 DLPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPL--K-YPGM------FKEADLIVINKADLAEAV 164 (207)
T ss_pred HhccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhh--h-hHhH------HhhCCEEEEEHHHccccc
Confidence 00135778888888211111 11123456677888876542111 0 1111 245789999999996532
Q ss_pred C--HHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHHHH
Q 030120 135 D--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 135 ~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 177 (182)
. ..++...+.. .....+++++||+++.|++++++++.+..
T Consensus 165 ~~~~~~~~~~l~~---~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 165 GFDVEKMKADAKK---INPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred hhhHHHHHHHHHH---hCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 1 2233333222 12456899999999999999999998753
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) [] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4e-12 Score=95.02 Aligned_cols=130 Identities=25% Similarity=0.391 Sum_probs=96.6
Q ss_pred cccceeeEEEE-CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCc----------ccHHHHHHHHHHHHhcccc
Q 030120 48 TIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDT----------DRIQTAKEEFHAILEEEEL 116 (182)
Q Consensus 48 t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~ 116 (182)
|+++....+.+ ....+.++|++|+...+.-|..++.++++||||+++++- .++.+....+..+......
T Consensus 222 T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~ 301 (389)
T PF00503_consen 222 TTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWF 301 (389)
T ss_dssp -SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGG
T ss_pred CCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccc
Confidence 34566667777 889999999999999999999999999999999998632 3477888899999988888
Q ss_pred CCCeEEEEEeCCCCCC----C----------------CCHHHHHHHhCcc-----cccC--CceEEEEecCCCCCCHHHH
Q 030120 117 KGAVALIFANKQDLPG----A----------------LDDAAVSEALELH-----KIKN--RQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 117 ~~~~iivv~nK~D~~~----~----------------~~~~~~~~~~~~~-----~~~~--~~~~~~~~Sa~~~~~v~~l 169 (182)
.+.|+++++||.|+.. . ...+.....+... .... ..+.+..++|.+..+++.+
T Consensus 302 ~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v 381 (389)
T PF00503_consen 302 KNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKV 381 (389)
T ss_dssp TTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHH
T ss_pred ccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHH
Confidence 8999999999999721 1 1112222222211 1111 5567889999999999999
Q ss_pred HHHHHHHH
Q 030120 170 MDWLSNTL 177 (182)
Q Consensus 170 ~~~i~~~~ 177 (182)
|+.+.+.+
T Consensus 382 ~~~v~~~i 389 (389)
T PF00503_consen 382 FNAVKDII 389 (389)
T ss_dssp HHHHHHHH
T ss_pred HHHhcCcC
Confidence 99988754
|
G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B .... |
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-12 Score=92.75 Aligned_cols=113 Identities=19% Similarity=0.282 Sum_probs=64.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccc-----------ccccceeeEEEE--C--CEEEEEEECCCCCCCcc---ch
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVSTI-----------PTIGFNVETVQY--N--NIKFQVWDLGGQTSIRP---YW 78 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~~~-----------~t~~~~~~~~~~--~--~~~~~~~D~~g~~~~~~---~~ 78 (182)
.++|+|+|.+|+|||||+|.|++....... ++..+....... . ..++.++||||...... .|
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 689999999999999999999987654321 122233222222 2 35778999999332111 01
Q ss_pred h------------------------hhcCCCCeEEEEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 79 R------------------------CYFPNTEAVIYVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 79 ~------------------------~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
. ..=.++|+++|+++++... +.... ..+..+ . ...++|-|+.|+|....
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~Di~~mk~L-s----~~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPLDIEFMKRL-S----KRVNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HHHHHHHHHH-T----TTSEEEEEESTGGGS-H
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHHHHHHHHHh-c----ccccEEeEEecccccCH
Confidence 0 0113569999999987542 22222 233333 2 35889999999998654
Q ss_pred CC
Q 030120 134 LD 135 (182)
Q Consensus 134 ~~ 135 (182)
.+
T Consensus 158 ~e 159 (281)
T PF00735_consen 158 EE 159 (281)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=6e-12 Score=91.81 Aligned_cols=78 Identities=22% Similarity=0.264 Sum_probs=56.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECC-----------------EEEEEEECCCCCCC---
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNN-----------------IKFQVWDLGGQTSI--- 74 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~~~--- 74 (182)
++++++|.||+|||||+|++.+..... ...|...+...+.+.. ..+.++|+||....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 689999999999999999999877322 3335456655555533 25899999994321
Q ss_pred ----ccchhhhcCCCCeEEEEEeCC
Q 030120 75 ----RPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 75 ----~~~~~~~~~~~d~ii~v~d~~ 95 (182)
.......++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 112334568899999999984
|
|
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-12 Score=100.91 Aligned_cols=156 Identities=22% Similarity=0.181 Sum_probs=102.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-----ccccccceeeEE----------------EECCEEEEEEECCCCCCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-----TIPTIGFNVETV----------------QYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-----~~~t~~~~~~~~----------------~~~~~~~~~~D~~g~~~~ 74 (182)
+..-+||+|+..+|||-|+..+-+.++.. ....++.++... .+.--.+.++|||||+.|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 44568999999999999999997765433 111222222111 123346788999999999
Q ss_pred ccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC-----CCH-------------
Q 030120 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA-----LDD------------- 136 (182)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~-----~~~------------- 136 (182)
..+.......||.+|+|+|+-.+-..+. ...+. +++ ..+.|.|+.+||+|..-. ...
T Consensus 554 tnlRsrgsslC~~aIlvvdImhGlepqt-iESi~-lLR---~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~ 628 (1064)
T KOG1144|consen 554 TNLRSRGSSLCDLAILVVDIMHGLEPQT-IESIN-LLR---MRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQ 628 (1064)
T ss_pred hhhhhccccccceEEEEeehhccCCcch-hHHHH-HHH---hcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHH
Confidence 9999999999999999999976521111 11111 222 257899999999997421 000
Q ss_pred HHHHHH-------hCc----------ccccCCceEEEEecCCCCCCHHHHHHHHHHH
Q 030120 137 AAVSEA-------LEL----------HKIKNRQWAIFKTCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 137 ~~~~~~-------~~~----------~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 176 (182)
.++... ++. .......+.++++||.+|+||.+|+.+|++.
T Consensus 629 ~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~l 685 (1064)
T KOG1144|consen 629 NEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQL 685 (1064)
T ss_pred HHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHH
Confidence 111111 110 0111245789999999999999999998864
|
|
| >KOG3905 consensus Dynein light intermediate chain [Cell motility] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-11 Score=87.57 Aligned_cols=162 Identities=17% Similarity=0.191 Sum_probs=104.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEE------CCEEEEEEECCCCCCCccchhhhcCC----
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY------NNIKFQVWDLGGQTSIRPYWRCYFPN---- 84 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~------~~~~~~~~D~~g~~~~~~~~~~~~~~---- 84 (182)
+..-+|+++|+.++|||||+.+|.+.+..... .+..+..+.+ .-.++.+|-..|......+....+..
T Consensus 50 psgk~VlvlGdn~sGKtsLi~klqg~e~~Kkg--sgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~a 127 (473)
T KOG3905|consen 50 PSGKNVLVLGDNGSGKTSLISKLQGSETVKKG--SGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLA 127 (473)
T ss_pred CCCCeEEEEccCCCchhHHHHHhhcccccCCC--CCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCcc
Confidence 35678999999999999999999887633333 3333433333 23577788888865444444333322
Q ss_pred CCeEEEEEeCCCcccHHHHHHHHHHHHhc---------------------------------------------------
Q 030120 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEE--------------------------------------------------- 113 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~--------------------------------------------------- 113 (182)
-..+|++.|.++++..-...+.|..++.+
T Consensus 128 etlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~ 207 (473)
T KOG3905|consen 128 ETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEH 207 (473)
T ss_pred ceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccc
Confidence 25788899999997654443333322221
Q ss_pred ----------cccCCCeEEEEEeCCCCCC-----CCCHHHHHHHhC---cccccCCceEEEEecCCCCCCHHHHHHHHHH
Q 030120 114 ----------EELKGAVALIFANKQDLPG-----ALDDAAVSEALE---LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 114 ----------~~~~~~~iivv~nK~D~~~-----~~~~~~~~~~~~---~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 175 (182)
..+-++|+++|++|||... ++-.++-.+.++ ..++...+...+.+|++...|++-+..+|.+
T Consensus 208 ~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivh 287 (473)
T KOG3905|consen 208 VLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVH 287 (473)
T ss_pred cccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHH
Confidence 1223689999999999831 111222222222 1223346778999999999999999999998
Q ss_pred HHh
Q 030120 176 TLK 178 (182)
Q Consensus 176 ~~~ 178 (182)
+..
T Consensus 288 r~y 290 (473)
T KOG3905|consen 288 RSY 290 (473)
T ss_pred Hhc
Confidence 754
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.5e-12 Score=88.34 Aligned_cols=96 Identities=19% Similarity=0.196 Sum_probs=71.3
Q ss_pred CCCccchhhhcCCCCeEEEEEeCCCcc-cHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccC
Q 030120 72 TSIRPYWRCYFPNTEAVIYVVDSSDTD-RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKN 150 (182)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 150 (182)
+++..+.+.+++++|++++|+|+.++. ++.....|+..+.. .+.|+++|+||+||.+..... .+... .. ..
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~--~~~~~-~~-~~ 95 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDME--KEQLD-IY-RN 95 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHH--HHHHH-HH-HH
Confidence 556666777899999999999999887 78888888765532 478999999999996432111 11111 11 12
Q ss_pred CceEEEEecCCCCCCHHHHHHHHHH
Q 030120 151 RQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 151 ~~~~~~~~Sa~~~~~v~~l~~~i~~ 175 (182)
.+.+++++||++|.|++++++.+.+
T Consensus 96 ~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 96 IGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred CCCeEEEEecCCchhHHHHHhhhcC
Confidence 4568999999999999999988764
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.9e-12 Score=89.75 Aligned_cols=163 Identities=16% Similarity=0.189 Sum_probs=112.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc----------CCccc-------ccccccceeeEEEE--CCEEEEEEECCCCCCCc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQM----------GEVVS-------TIPTIGFNVETVQY--NNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~----------~~~~~-------~~~t~~~~~~~~~~--~~~~~~~~D~~g~~~~~ 75 (182)
....+|+-+|....|||||..++.. .++.+ ....+.++...+.| ....+.-.|||||.+|-
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI 131 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI 131 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence 4678999999999999999888741 11211 22244566677777 55777889999999998
Q ss_pred cchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH-----HHHHHHhCcccccC
Q 030120 76 PYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-----AAVSEALELHKIKN 150 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-----~~~~~~~~~~~~~~ 150 (182)
.........-|+.|+|+.++|+.- .+.++.+... ++.+. ..+++++||.|+.++.+. -++.+.+.......
T Consensus 132 KNMItGaaqMDGaILVVaatDG~M-PQTrEHlLLA-rQVGV--~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G 207 (449)
T KOG0460|consen 132 KNMITGAAQMDGAILVVAATDGPM-PQTREHLLLA-RQVGV--KHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG 207 (449)
T ss_pred HHhhcCccccCceEEEEEcCCCCC-cchHHHHHHH-HHcCC--ceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 888888888999999999999853 3344333222 33332 568999999999754332 23344445555667
Q ss_pred CceEEEEecCCC---CC-------CHHHHHHHHHHHHhcCC
Q 030120 151 RQWAIFKTCAIK---GE-------GLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 151 ~~~~~~~~Sa~~---~~-------~v~~l~~~i~~~~~~~~ 181 (182)
.++|++.-||+- |. .|.+|++.+.++++.+.
T Consensus 208 d~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~ 248 (449)
T KOG0460|consen 208 DNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPE 248 (449)
T ss_pred CCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcc
Confidence 888999988754 31 26677777777666543
|
|
| >KOG3886 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.9e-12 Score=86.29 Aligned_cols=157 Identities=18% Similarity=0.275 Sum_probs=100.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc----cccccccceeeEEEE-CCEEEEEEECCCCCCCcc-----chhhhcCCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVV----STIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRP-----YWRCYFPNT 85 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~----~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~-----~~~~~~~~~ 85 (182)
..-||+++|.+|+||||+=..++..... ....|+++....+.+ .+.-+.+||++|++.+-. .....+++.
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 3568999999999999987766644422 255566666666666 557889999999985422 234578899
Q ss_pred CeEEEEEeCCCccc---HHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCc---ccccCCceEEEEec
Q 030120 86 EAVIYVVDSSDTDR---IQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALEL---HKIKNRQWAIFKTC 159 (182)
Q Consensus 86 d~ii~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~S 159 (182)
++++++||+...+- +....+.++.+++.. +...+...++|.|+......+.+.+.... .......+.++++|
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~S--P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Ts 160 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNS--PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTS 160 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcC--CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccc
Confidence 99999999987642 222333444444432 56789999999999766554443332211 11123446788888
Q ss_pred CCCCCCHHHHHHHHHH
Q 030120 160 AIKGEGLFEGMDWLSN 175 (182)
Q Consensus 160 a~~~~~v~~l~~~i~~ 175 (182)
--+.. +-..+..+..
T Consensus 161 iwDet-l~KAWS~iv~ 175 (295)
T KOG3886|consen 161 IWDET-LYKAWSSIVY 175 (295)
T ss_pred hhhHH-HHHHHHHHHH
Confidence 65443 3333444443
|
|
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1e-11 Score=97.49 Aligned_cols=115 Identities=19% Similarity=0.190 Sum_probs=86.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC--c------c------c-------ccccccceeeEEEECC-EEEEEEECCCC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGE--V------V------S-------TIPTIGFNVETVQYNN-IKFQVWDLGGQ 71 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~--~------~------~-------~~~t~~~~~~~~~~~~-~~~~~~D~~g~ 71 (182)
..+..+|+|+|+..+|||||..+++-.. . . . ..-|+.....++.+++ ..+.++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 4677899999999999999999996321 1 0 0 0012233334566675 99999999999
Q ss_pred CCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 72 TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
-+|.......++-+|+++.|+|+..+-.. +....|++..+ .++|.++++||+|....
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~-QTEtv~rqa~~----~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEP-QTETVWRQADK----YGVPRILFVNKMDRLGA 143 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeee-cHHHHHHHHhh----cCCCeEEEEECcccccc
Confidence 99999999999999999999999887432 23334444433 47999999999998654
|
|
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-11 Score=87.42 Aligned_cols=58 Identities=28% Similarity=0.409 Sum_probs=41.2
Q ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHHH
Q 030120 118 GAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 118 ~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 176 (182)
..+-++|+||+|+.+.. ..++..............+++++||++|+|++++.++|.+.
T Consensus 230 ~~ADIVVLNKiDLl~~~-~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYL-NFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCccc-HHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 45679999999997532 12233333322233456789999999999999999999874
|
|
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.3e-11 Score=86.94 Aligned_cols=154 Identities=15% Similarity=0.127 Sum_probs=90.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC----Ccc-------------c--cc---cccccee---eEEEE-----CCEEEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG----EVV-------------S--TI---PTIGFNV---ETVQY-----NNIKFQ 64 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~----~~~-------------~--~~---~t~~~~~---~~~~~-----~~~~~~ 64 (182)
..++.|+++|+.++|||||+|+|.+. +.. + .. .|+++.. ..++. -..++.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 56789999999999999999999877 322 1 12 3444444 33433 237999
Q ss_pred EEECCCCCC--------Ccc------c---------------hhhhcC-CCCeEEEEE-eCC----CcccHHHH-HHHHH
Q 030120 65 VWDLGGQTS--------IRP------Y---------------WRCYFP-NTEAVIYVV-DSS----DTDRIQTA-KEEFH 108 (182)
Q Consensus 65 ~~D~~g~~~--------~~~------~---------------~~~~~~-~~d~ii~v~-d~~----~~~s~~~~-~~~~~ 108 (182)
++||+|... ... . +...+. ++++.++|. |.+ .++..... ..++.
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 999999221 111 0 233445 789999998 664 11112333 33433
Q ss_pred HHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCC--CCCHHHHHHHHHHHH
Q 030120 109 AILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK--GEGLFEGMDWLSNTL 177 (182)
Q Consensus 109 ~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~v~~l~~~i~~~~ 177 (182)
++ +. .++|.++++||.|-.... ..++...+. ...+.+++.+|+.. ...+..+++.++..+
T Consensus 175 eL-k~---~~kPfiivlN~~dp~~~e-t~~l~~~l~----eky~vpvl~v~c~~l~~~DI~~il~~vL~EF 236 (492)
T TIGR02836 175 EL-KE---LNKPFIILLNSTHPYHPE-TEALRQELE----EKYDVPVLAMDVESMRESDILSVLEEVLYEF 236 (492)
T ss_pred HH-Hh---cCCCEEEEEECcCCCCch-hHHHHHHHH----HHhCCceEEEEHHHcCHHHHHHHHHHHHhcC
Confidence 33 33 479999999999943222 222222221 12234566666644 445666666655433
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.3e-12 Score=79.84 Aligned_cols=113 Identities=18% Similarity=0.100 Sum_probs=76.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cc-ccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TI-PTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~-~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (182)
+|++++|..|+|||+|+.++....+.. .. +|.+ +......+.+.++.++.|++..
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~~~ 57 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWRVD 57 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEEEEEEcc
Confidence 489999999999999999997666654 22 3332 2333455678889999999999
Q ss_pred CcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030120 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+..++... |...+... ...+.|.++++||.|+.+.. .+.... ...++++|++++.|+.
T Consensus 58 ~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~~---~~~~~~--------~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 58 DRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEER---QVATEE--------GLEFAETSAKTPEEGE 115 (124)
T ss_pred CHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhhC---cCCHHH--------HHHHHHHhCCCcchhh
Confidence 98877544 55444433 22468899999999974321 111111 1136788999999875
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. |
| >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-10 Score=87.50 Aligned_cols=162 Identities=20% Similarity=0.206 Sum_probs=102.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEE------CCEEEEEEECCCCCCCccchhhhcCC----
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY------NNIKFQVWDLGGQTSIRPYWRCYFPN---- 84 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~------~~~~~~~~D~~g~~~~~~~~~~~~~~---- 84 (182)
...-+|+|+|..++|||||+.+|.+.+- ..++.+..|..+++ ...++.+|-..|...+..+....+..
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e~--~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~ 100 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIED--PKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP 100 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccCC--CCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence 4567999999999999999999976542 33445544444444 23578999998865555554433332
Q ss_pred CCeEEEEEeCCCcccHHHH-HHHHHHHHhc--------------------------------------------------
Q 030120 85 TEAVIYVVDSSDTDRIQTA-KEEFHAILEE-------------------------------------------------- 113 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~-------------------------------------------------- 113 (182)
--++++|+|.+.|+.+-.. ..|+. +++.
T Consensus 101 ~t~vvIvlDlS~PW~~~esL~~W~~-vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~ 179 (472)
T PF05783_consen 101 NTLVVIVLDLSKPWNIMESLEKWLS-VLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDD 179 (472)
T ss_pred ceEEEEEecCCChHHHHHHHHHHHH-HHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccc
Confidence 2678889999999865322 22221 1110
Q ss_pred ------------cccCCCeEEEEEeCCCCCCC-----CCHHHHHHHhC---cccccCCceEEEEecCCCCCCHHHHHHHH
Q 030120 114 ------------EELKGAVALIFANKQDLPGA-----LDDAAVSEALE---LHKIKNRQWAIFKTCAIKGEGLFEGMDWL 173 (182)
Q Consensus 114 ------------~~~~~~~iivv~nK~D~~~~-----~~~~~~~~~~~---~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 173 (182)
..+-++|++||++|+|.... ...++-.+.+. ...+-..+..++.||++...+++.|+.+|
T Consensus 180 ~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi 259 (472)
T PF05783_consen 180 ESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYI 259 (472)
T ss_pred ccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHH
Confidence 00114799999999997321 01111111111 12223467789999999999999999999
Q ss_pred HHHHhc
Q 030120 174 SNTLKS 179 (182)
Q Consensus 174 ~~~~~~ 179 (182)
.+.+..
T Consensus 260 ~h~l~~ 265 (472)
T PF05783_consen 260 LHRLYG 265 (472)
T ss_pred HHHhcc
Confidence 887754
|
The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo []. |
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-10 Score=80.17 Aligned_cols=69 Identities=14% Similarity=0.185 Sum_probs=45.1
Q ss_pred EEEEEEECCCCCCC-------------ccchhhhcCC-CCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEe
Q 030120 61 IKFQVWDLGGQTSI-------------RPYWRCYFPN-TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFAN 126 (182)
Q Consensus 61 ~~~~~~D~~g~~~~-------------~~~~~~~~~~-~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~n 126 (182)
.++.++||||.... ..+...|+++ .+++++|+|+...............+ . ..+.|+++|+|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~l-d---~~~~rti~ViT 200 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEV-D---PQGERTIGVIT 200 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHH-H---HcCCcEEEEEE
Confidence 68899999996421 1234567774 46999999987653333322222222 2 24689999999
Q ss_pred CCCCCCC
Q 030120 127 KQDLPGA 133 (182)
Q Consensus 127 K~D~~~~ 133 (182)
|+|..+.
T Consensus 201 K~D~~~~ 207 (240)
T smart00053 201 KLDLMDE 207 (240)
T ss_pred CCCCCCc
Confidence 9999764
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.4e-11 Score=92.94 Aligned_cols=117 Identities=17% Similarity=0.127 Sum_probs=72.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc---c-cccccceeeEEEECCEEEEEEECCCCCCCc-------cc---hhh
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS---T-IPTIGFNVETVQYNNIKFQVWDLGGQTSIR-------PY---WRC 80 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~---~-~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~---~~~ 80 (182)
+...+|+++|.+|+||||++|+++++.... . ..|+..........+..+.++||||..... .. ...
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~ 195 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKK 195 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHH
Confidence 345789999999999999999999987433 1 123333222334477899999999965431 11 122
Q ss_pred hcC--CCCeEEEEEeCCCcccHHH---HHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 81 YFP--NTEAVIYVVDSSDTDRIQT---AKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 81 ~~~--~~d~ii~v~d~~~~~s~~~---~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
++. .+|++|+|..+........ ..+.+.+++...- =..+|||.|..|..++
T Consensus 196 ~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~I--wk~tIVVFThgD~lpp 251 (763)
T TIGR00993 196 FIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSI--WFNAIVTLTHAASAPP 251 (763)
T ss_pred HHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHh--HcCEEEEEeCCccCCC
Confidence 333 4799999988763322112 2223333332211 1468999999998753
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.5e-11 Score=89.71 Aligned_cols=152 Identities=16% Similarity=0.118 Sum_probs=100.9
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccc----ceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCC
Q 030120 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG----FNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 12 ~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~----~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d 86 (182)
...++.+++.++|+.++|||.++++++++.+.. ...+.. ++..........+.+-|.+-. ....+...- ..||
T Consensus 420 ~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cD 497 (625)
T KOG1707|consen 420 QTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACD 497 (625)
T ss_pred cccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceee
Confidence 345788899999999999999999999988766 323332 222222224456667777654 333333333 7799
Q ss_pred eEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC-----CHHHHHHHhCcccccCCceEEEEecCC
Q 030120 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-----DDAAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
+++++||.+++.++......+...... .+.|+++|.+|+|+.+.. .+.++...++.. +.+.+|.+
T Consensus 498 v~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~-------~P~~~S~~ 567 (625)
T KOG1707|consen 498 VACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLP-------PPIHISSK 567 (625)
T ss_pred eEEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCC-------CCeeeccC
Confidence 999999999999998888776666443 579999999999996432 123333332211 24556666
Q ss_pred CCCCHHHHHHHHHHH
Q 030120 162 KGEGLFEGMDWLSNT 176 (182)
Q Consensus 162 ~~~~v~~l~~~i~~~ 176 (182)
.... .++|..|...
T Consensus 568 ~~~s-~~lf~kL~~~ 581 (625)
T KOG1707|consen 568 TLSS-NELFIKLATM 581 (625)
T ss_pred CCCC-chHHHHHHHh
Confidence 4333 6777777654
|
|
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.9e-12 Score=81.91 Aligned_cols=145 Identities=19% Similarity=0.155 Sum_probs=84.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC---ccc-----cccc----------cc-----ceee-EE----------------
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE---VVS-----TIPT----------IG-----FNVE-TV---------------- 56 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~---~~~-----~~~t----------~~-----~~~~-~~---------------- 56 (182)
-++|.+.|++|+|||+|+.+++..- +.. +.-| .+ .... ..
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 4789999999999999999986321 110 0001 00 0000 00
Q ss_pred EECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHh-ccccCCCeEEEEEeCCCCCCCCC
Q 030120 57 QYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILE-EEELKGAVALIFANKQDLPGALD 135 (182)
Q Consensus 57 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~iivv~nK~D~~~~~~ 135 (182)
.+...++.+++..|. ....-++.-..+.-+||+|++.++.. . .+ ..... ..-++|+||.|+.+...
T Consensus 93 ~~~~~Dll~iEs~GN---L~~~~sp~L~d~~~v~VidvteGe~~---P------~K~gP~i~-~aDllVInK~DLa~~v~ 159 (202)
T COG0378 93 DFPDLDLLFIESVGN---LVCPFSPDLGDHLRVVVIDVTEGEDI---P------RKGGPGIF-KADLLVINKTDLAPYVG 159 (202)
T ss_pred cCCcCCEEEEecCcc---eecccCcchhhceEEEEEECCCCCCC---c------ccCCCcee-EeeEEEEehHHhHHHhC
Confidence 001135566666661 11111122233589999999987431 1 11 11111 25699999999976544
Q ss_pred H--HHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHHHH
Q 030120 136 D--AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 136 ~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 177 (182)
. +......+ ......+++++|+++|+|++++++++....
T Consensus 160 ~dlevm~~da~---~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 160 ADLEVMARDAK---EVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred ccHHHHHHHHH---HhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 3 33333332 234667899999999999999999987653
|
|
| >KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3e-10 Score=77.78 Aligned_cols=84 Identities=19% Similarity=0.349 Sum_probs=63.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECCEEEEEEECCCCCC-------CccchhhhcCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTS-------IRPYWRCYFPN 84 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~ 84 (182)
....+|+++|-|.+|||||+..+..-.... ...|.......+.+++..+++.|.||.-. .........+.
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeec
Confidence 355799999999999999999997654332 44455566778888999999999999322 12334445677
Q ss_pred CCeEEEEEeCCCcc
Q 030120 85 TEAVIYVVDSSDTD 98 (182)
Q Consensus 85 ~d~ii~v~d~~~~~ 98 (182)
+|.+++|.|++..+
T Consensus 140 aDlilMvLDatk~e 153 (364)
T KOG1486|consen 140 ADLILMVLDATKSE 153 (364)
T ss_pred ccEEEEEecCCcch
Confidence 99999999998753
|
|
| >KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.4e-11 Score=79.73 Aligned_cols=159 Identities=22% Similarity=0.284 Sum_probs=103.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc----ccccccceeeEEEECCEEEEEEECCCCCCCccc---hhhhcCCCCeEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY---WRCYFPNTEAVIY 90 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~---~~~~~~~~d~ii~ 90 (182)
.+|+++|...+||||+....+.+..+. ..+|..+....+.-.-.++++||.|||-.+-.. ....++++.+.+|
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALif 107 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIF 107 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEE
Confidence 569999999999999998887766443 223333444444445688999999998765433 3567899999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHh--ccccCCCeEEEEEeCCCCCCCCCH--------HHHHHHhCcccccCCceEEEEecC
Q 030120 91 VVDSSDTDRIQTAKEEFHAILE--EEELKGAVALIFANKQDLPGALDD--------AAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~--~~~~~~~~iivv~nK~D~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
|+|+.+. .......+..... ..-++++.+-+.+.|.|...+... +...+.++..........++.+|-
T Consensus 108 vIDaQdd--y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI 185 (347)
T KOG3887|consen 108 VIDAQDD--YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI 185 (347)
T ss_pred EEechHH--HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence 9999766 2333322222222 233467889999999998654322 222222332333344566777876
Q ss_pred CCCCCHHHHHHHHHHHHhc
Q 030120 161 IKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 161 ~~~~~v~~l~~~i~~~~~~ 179 (182)
.+. ++-+.|..+.+++.+
T Consensus 186 yDH-SIfEAFSkvVQkLip 203 (347)
T KOG3887|consen 186 YDH-SIFEAFSKVVQKLIP 203 (347)
T ss_pred cch-HHHHHHHHHHHHHhh
Confidence 554 488888887776543
|
|
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.6e-10 Score=81.18 Aligned_cols=79 Identities=24% Similarity=0.271 Sum_probs=60.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEE------------------CCEEEEEEECCC-----
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQY------------------NNIKFQVWDLGG----- 70 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~------------------~~~~~~~~D~~g----- 70 (182)
.++++|||-||+|||||.|++....... ...|++++.....+ ....+.++|.+|
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 4789999999999999999998777432 33366666655544 125788999998
Q ss_pred --CCCCccchhhhcCCCCeEEEEEeCC
Q 030120 71 --QTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 71 --~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (182)
.+.+......-++.+|+++.|++..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 3455666777789999999999986
|
|
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-10 Score=84.16 Aligned_cols=160 Identities=18% Similarity=0.101 Sum_probs=101.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccc----------------cccceeeEEEE------------------
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIP----------------TIGFNVETVQY------------------ 58 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~----------------t~~~~~~~~~~------------------ 58 (182)
.+..+.+++.|+.++|||||+-.|..+.... ... +.+.....+-+
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 5678899999999999999999997554221 111 11122222111
Q ss_pred -----CCEEEEEEECCCCCCCccchhh--hcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q 030120 59 -----NNIKFQVWDLGGQTSIRPYWRC--YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 59 -----~~~~~~~~D~~g~~~~~~~~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 131 (182)
.+.-+.++||.||+.+...... .-++.|..++++.++++-+ ...+....+... ...|+++++||+|+.
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~--~~tkEHLgi~~a---~~lPviVvvTK~D~~ 268 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT--KMTKEHLGIALA---MELPVIVVVTKIDMV 268 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc--hhhhHhhhhhhh---hcCCEEEEEEecccC
Confidence 2356789999999998766544 3367899999999998843 333322223222 468999999999997
Q ss_pred CCCCHHHHHH----HhCcc--------------------cccCCceEEEEecCCCCCCHHHHHHHHHHHHhc
Q 030120 132 GALDDAAVSE----ALELH--------------------KIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 132 ~~~~~~~~~~----~~~~~--------------------~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
++...+.+.+ .++.. .....-.|+|.+|+.+|.|++-| +.+...++.
T Consensus 269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL-~e~f~~Lp~ 339 (527)
T COG5258 269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLL-DEFFLLLPK 339 (527)
T ss_pred cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHH-HHHHHhCCc
Confidence 6544322222 22110 01122478999999999998754 444444544
|
|
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.9e-11 Score=86.41 Aligned_cols=76 Identities=24% Similarity=0.252 Sum_probs=54.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECCE-----------------EEEEEECCCCCCC-----
Q 030120 20 ILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNI-----------------KFQVWDLGGQTSI----- 74 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~-----------------~~~~~D~~g~~~~----- 74 (182)
++++|.||+|||||+|++.+..... ...|.+.+...+.+.+. .+.++|+||....
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5899999999999999999877633 33355666666665432 4899999994321
Q ss_pred --ccchhhhcCCCCeEEEEEeCC
Q 030120 75 --RPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 75 --~~~~~~~~~~~d~ii~v~d~~ 95 (182)
.......++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 122334567899999999873
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >KOG0410 consensus Predicted GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.3e-11 Score=85.93 Aligned_cols=151 Identities=20% Similarity=0.199 Sum_probs=100.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEE-CCEEEEEEECCCCCCCcc--------chhhh
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRP--------YWRCY 81 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~--------~~~~~ 81 (182)
.....-|+++|-.|+|||||+++|.+....+ ...|.+...+.... .+..+.+.||-|.-.-.. .+..-
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLee 254 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEE 254 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHH
Confidence 3456679999999999999999998655433 44566666666655 566778899999432111 12234
Q ss_pred cCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe----EEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEE
Q 030120 82 FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV----ALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFK 157 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~----iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
...+|.++-|.|++.|..- .........++..+.+..| ++=|=||+|..+.... .+ .. .-+.
T Consensus 255 VaeadlllHvvDiShP~ae-~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e----~E-------~n--~~v~ 320 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAE-EQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE----EE-------KN--LDVG 320 (410)
T ss_pred HhhcceEEEEeecCCccHH-HHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc----cc-------cC--Cccc
Confidence 5678999999999999743 3333444555555444333 4556777776433111 11 11 1578
Q ss_pred ecCCCCCCHHHHHHHHHHHHh
Q 030120 158 TCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 158 ~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
+||++|.|++++.+.+-..+.
T Consensus 321 isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 321 ISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred cccccCccHHHHHHHHHHHhh
Confidence 999999999999998877654
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=99.21 E-value=6e-11 Score=78.72 Aligned_cols=56 Identities=20% Similarity=0.362 Sum_probs=40.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcccc--cccccceeeEEEECCEEEEEEECCC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVST--IPTIGFNVETVQYNNIKFQVWDLGG 70 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~D~~g 70 (182)
....++++++|.||+|||||+|++.+...... .|.++.....+.. +..+.++||||
T Consensus 114 ~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~-~~~~~l~DtPG 171 (172)
T cd04178 114 IKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL-DKKVKLLDSPG 171 (172)
T ss_pred cccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe-CCCEEEEECcC
Confidence 34568999999999999999999998876553 3333333333333 34689999998
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.8e-11 Score=82.79 Aligned_cols=135 Identities=23% Similarity=0.337 Sum_probs=93.8
Q ss_pred ccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCC----------CcccHHHHHHHHHHHHhcc
Q 030120 45 TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS----------DTDRIQTAKEEFHAILEEE 114 (182)
Q Consensus 45 ~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~ 114 (182)
..||+++....++.....++++|++|+..-+.-|.+++.+.-.++|++.++ +..+.+.....+.-++...
T Consensus 183 RvPTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yP 262 (359)
T KOG0085|consen 183 RVPTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 262 (359)
T ss_pred ecCcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccc
Confidence 334566666666667788999999999998999999999888888777664 3345677778888888888
Q ss_pred ccCCCeEEEEEeCCCCCCCCCH----------------------HHHHHHhC-cccccCCceEEEEecCCCCCCHHHHHH
Q 030120 115 ELKGAVALIFANKQDLPGALDD----------------------AAVSEALE-LHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 115 ~~~~~~iivv~nK~D~~~~~~~----------------------~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 171 (182)
+..+.++|+++||-|+.++.-. +-+.++.. ..........-..+.|.+-+|+.-+|.
T Consensus 263 WF~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFa 342 (359)
T KOG0085|consen 263 WFQNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFA 342 (359)
T ss_pred cccCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHH
Confidence 8889999999999999654111 00011111 111111223345567888899999999
Q ss_pred HHHHHHhc
Q 030120 172 WLSNTLKS 179 (182)
Q Consensus 172 ~i~~~~~~ 179 (182)
.+.+.+.+
T Consensus 343 aVkDtiLq 350 (359)
T KOG0085|consen 343 AVKDTILQ 350 (359)
T ss_pred HHHHHHHH
Confidence 88877654
|
|
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.8e-10 Score=81.17 Aligned_cols=122 Identities=20% Similarity=0.303 Sum_probs=75.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-----------ccccccceeeEEEE--CC--EEEEEEECCCCCCCc---c
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-----------TIPTIGFNVETVQY--NN--IKFQVWDLGGQTSIR---P 76 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-----------~~~t~~~~~~~~~~--~~--~~~~~~D~~g~~~~~---~ 76 (182)
.-.++|+++|+.|.|||||+|+|++..... ..+++.+....... ++ .++.++||||.-..- .
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 568999999999999999999999874322 12333333333333 33 567789999933221 1
Q ss_pred chh-----------hh--------------cCCCCeEEEEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEEeCCCC
Q 030120 77 YWR-----------CY--------------FPNTEAVIYVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDL 130 (182)
Q Consensus 77 ~~~-----------~~--------------~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~ 130 (182)
.|. .| =.++|+++|++.++... +.... ..+..+. ..+.+|-|+.|+|.
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~-l~~~DIe~Mk~ls-----~~vNlIPVI~KaD~ 174 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHG-LKPLDIEAMKRLS-----KRVNLIPVIAKADT 174 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCC-CCHHHHHHHHHHh-----cccCeeeeeecccc
Confidence 111 11 13579999999987543 22222 2333332 35679999999999
Q ss_pred CCCCCHHHHHHH
Q 030120 131 PGALDDAAVSEA 142 (182)
Q Consensus 131 ~~~~~~~~~~~~ 142 (182)
....+...+.+.
T Consensus 175 lT~~El~~~K~~ 186 (373)
T COG5019 175 LTDDELAEFKER 186 (373)
T ss_pred CCHHHHHHHHHH
Confidence 765444444433
|
|
| >KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.1e-11 Score=89.84 Aligned_cols=159 Identities=14% Similarity=0.214 Sum_probs=114.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccc-ceeeEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIG-FNVETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~-~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
-.++|++|+|..++|||+|+.+++.+.+.....+.+ ...+.+.. ...-+.+.|.+|.. ...+...+|++|||
T Consensus 28 ipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIfv 102 (749)
T KOG0705|consen 28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVFV 102 (749)
T ss_pred cchhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCc-----hhhhhhhccceEEE
Confidence 367899999999999999999999999888444443 33333333 45566677777633 33467889999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 171 (182)
|.+.+..+++........+........+|.++++++.-.......-.....-.....+...+.+|++.+.+|.++...|+
T Consensus 103 f~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~ 182 (749)
T KOG0705|consen 103 FSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQ 182 (749)
T ss_pred EEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHH
Confidence 99999999999988877776665556788899998875432222211111222223345677899999999999999999
Q ss_pred HHHHHHh
Q 030120 172 WLSNTLK 178 (182)
Q Consensus 172 ~i~~~~~ 178 (182)
.+..++.
T Consensus 183 ~~~~k~i 189 (749)
T KOG0705|consen 183 EVAQKIV 189 (749)
T ss_pred HHHHHHH
Confidence 8887654
|
|
| >KOG2486 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-11 Score=85.56 Aligned_cols=161 Identities=15% Similarity=0.108 Sum_probs=95.9
Q ss_pred hhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc--ccccccceeeEEEE-CCEEEEEEECCCC----------CCCccc
Q 030120 11 SLFGNKEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIGFNVETVQY-NNIKFQVWDLGGQ----------TSIRPY 77 (182)
Q Consensus 11 ~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t~~~~~~~~~~-~~~~~~~~D~~g~----------~~~~~~ 77 (182)
.++.++..++++.|.+|+|||||+|.++..+... ..++.+.....-.+ -+..+.++|.||. ..+...
T Consensus 130 D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 130 DCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred cCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHh
Confidence 3456788999999999999999999999877554 22233333322222 4678999999991 223334
Q ss_pred hhhhcCCC---CeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH------HHHHHHhCccc-
Q 030120 78 WRCYFPNT---EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD------AAVSEALELHK- 147 (182)
Q Consensus 78 ~~~~~~~~---d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~------~~~~~~~~~~~- 147 (182)
...|+.+- -.+++++|++.+ ++.......+++.+ .++|..+|+||||....... ..+...+....
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~ 284 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVP--IQPTDNPEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIR 284 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCC--CCCCChHHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhccc
Confidence 44555433 344555666544 22222222333333 58999999999998543221 01111010000
Q ss_pred -ccCCceEEEEecCCCCCCHHHHHHHHHHH
Q 030120 148 -IKNRQWAIFKTCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 148 -~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 176 (182)
.-....+++.+|+.++.|+++|.-.|.+.
T Consensus 285 ~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 285 GVFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred cceeccCCceeeecccccCceeeeeehhhh
Confidence 01123457789999999999887776653
|
|
| >KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.2e-10 Score=89.22 Aligned_cols=112 Identities=16% Similarity=0.191 Sum_probs=80.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccccccc---------c-------c--ceeeEEEE-------CCEEEEEEEC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPT---------I-------G--FNVETVQY-------NNIKFQVWDL 68 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t---------~-------~--~~~~~~~~-------~~~~~~~~D~ 68 (182)
+....+|+++|+-.+|||+|+..|..+..+...+. + + +.....+. ...-+.+.||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 35677999999999999999999976654331110 0 0 01111111 3456789999
Q ss_pred CCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCC
Q 030120 69 GGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDL 130 (182)
Q Consensus 69 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~ 130 (182)
|||-.+-......++.+|++++++|+.++-.++..+ +++.....+.|+++|+||+|.
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr-----~ikhaiq~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTER-----IIKHAIQNRLPIVVVINKVDR 261 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceeeHHH-----HHHHHHhccCcEEEEEehhHH
Confidence 999999988888899999999999999886654443 233333357999999999996
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.8e-10 Score=74.70 Aligned_cols=55 Identities=22% Similarity=0.321 Sum_probs=38.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccccccc--ceeeEEEECCEEEEEEECCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIG--FNVETVQYNNIKFQVWDLGG 70 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~D~~g 70 (182)
....+++++|.+|+|||||+|++.+.......++.+ .....+.. ...+.++||||
T Consensus 100 ~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~liDtPG 156 (157)
T cd01858 100 KKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL-MKRIYLIDCPG 156 (157)
T ss_pred ccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc-CCCEEEEECcC
Confidence 356889999999999999999999877655333222 22222222 34588999998
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.7e-10 Score=79.70 Aligned_cols=114 Identities=18% Similarity=0.166 Sum_probs=77.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc----ccccccceeeEEEEC--------------------------------
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYN-------------------------------- 59 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~-------------------------------- 59 (182)
...=|+++|...+||||+++.|+...++. ..||++.-...+...
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 45568999999999999999999988776 445555333322110
Q ss_pred ---------CEEEEEEECCCCCCC-----------ccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCC
Q 030120 60 ---------NIKFQVWDLGGQTSI-----------RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGA 119 (182)
Q Consensus 60 ---------~~~~~~~D~~g~~~~-----------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 119 (182)
-..+.++||||.-+. ......+..++|.|+++||+..-+--......+..+ ....-
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aL----kG~Ed 212 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDAL----KGHED 212 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHh----hCCcc
Confidence 137899999994322 233456778999999999998665333444333333 22345
Q ss_pred eEEEEEeCCCCCCC
Q 030120 120 VALIFANKQDLPGA 133 (182)
Q Consensus 120 ~iivv~nK~D~~~~ 133 (182)
.+-+|+||+|..+.
T Consensus 213 kiRVVLNKADqVdt 226 (532)
T KOG1954|consen 213 KIRVVLNKADQVDT 226 (532)
T ss_pred eeEEEeccccccCH
Confidence 67889999998654
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.5e-10 Score=74.85 Aligned_cols=95 Identities=17% Similarity=0.127 Sum_probs=62.8
Q ss_pred ccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceE
Q 030120 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWA 154 (182)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (182)
+.+..+..+++|++++|+|+.++..... ..+...... .+.|+++|+||+|+.+.. ....... .....+.+
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~---~~~p~iiv~NK~Dl~~~~---~~~~~~~--~~~~~~~~ 72 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE---LGKKLLIVLNKADLVPKE---VLEKWKS--IKESEGIP 72 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh---CCCcEEEEEEhHHhCCHH---HHHHHHH--HHHhCCCc
Confidence 4456777888999999999987643221 112222222 368999999999985421 1111110 01123356
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHhc
Q 030120 155 IFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 155 ~~~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
++++||+++.|++++++.+.+.++.
T Consensus 73 ~~~iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 73 VVYVSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred EEEEEccccccHHHHHHHHHHHHhh
Confidence 8999999999999999999987754
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.3e-10 Score=76.66 Aligned_cols=98 Identities=18% Similarity=0.072 Sum_probs=64.0
Q ss_pred CccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC-HHHHHHHh---Cccccc
Q 030120 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEAL---ELHKIK 149 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~---~~~~~~ 149 (182)
+...+..+++++|++++|+|+.+.... |...+... ..+.|+++|+||+|+.+... ........ ......
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcC
Confidence 466778889999999999999876421 11111111 14689999999999964332 22222221 001111
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 030120 150 NRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 150 ~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
.....++++||++++|++++++.|.+.++
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 11235899999999999999999998764
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.6e-09 Score=78.46 Aligned_cols=115 Identities=16% Similarity=0.267 Sum_probs=70.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccc--------c--ccccceeeEEEE--CC--EEEEEEECCCCCCCcc---c
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVST--------I--PTIGFNVETVQY--NN--IKFQVWDLGGQTSIRP---Y 77 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~--------~--~t~~~~~~~~~~--~~--~~~~~~D~~g~~~~~~---~ 77 (182)
.-.|+++++|+.|.|||||+|+|+...+... . .|..+....... ++ .++.++||||...... .
T Consensus 19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~ 98 (366)
T KOG2655|consen 19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC 98 (366)
T ss_pred CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence 3469999999999999999999987754331 1 133333333333 33 5667899999322110 1
Q ss_pred h-----------h-----------hhc--CCCCeEEEEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030120 78 W-----------R-----------CYF--PNTEAVIYVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 78 ~-----------~-----------~~~--~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
| . ..+ .++|+++|++.+.... +.... ..+..+ . ....+|-|+.|+|...
T Consensus 99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~Di~~Mk~l-~----~~vNiIPVI~KaD~lT 172 (366)
T KOG2655|consen 99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPLDIEFMKKL-S----KKVNLIPVIAKADTLT 172 (366)
T ss_pred chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHhhHHHHHHH-h----ccccccceeeccccCC
Confidence 1 1 112 2679999999987542 12222 222222 2 3578999999999875
Q ss_pred CCC
Q 030120 133 ALD 135 (182)
Q Consensus 133 ~~~ 135 (182)
..+
T Consensus 173 ~~E 175 (366)
T KOG2655|consen 173 KDE 175 (366)
T ss_pred HHH
Confidence 533
|
|
| >KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.08 E-value=4e-11 Score=84.19 Aligned_cols=166 Identities=13% Similarity=0.056 Sum_probs=103.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc------ccccccceee-------------------E----------EE-
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS------TIPTIGFNVE-------------------T----------VQ- 57 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~------~~~t~~~~~~-------------------~----------~~- 57 (182)
.+-.++|+-+|..-.||||++.++.+-.... ..-|+...+. . .+
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~ 114 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR 114 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence 4568899999999999999999987533111 0001100000 0 00
Q ss_pred ------E-CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCC
Q 030120 58 ------Y-NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDL 130 (182)
Q Consensus 58 ------~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~ 130 (182)
+ --..+.++|+|||+-+-........-.|+.++++..+......+..+.+..+--- .=+.++++-||+|+
T Consensus 115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM---~LkhiiilQNKiDl 191 (466)
T KOG0466|consen 115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM---KLKHIIILQNKIDL 191 (466)
T ss_pred CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh---hhceEEEEechhhh
Confidence 0 0136679999999866555444445568999999988665443443333322111 12468999999999
Q ss_pred CCCCCHHHHHHHhCc--ccccCCceEEEEecCCCCCCHHHHHHHHHHHHhcCCC
Q 030120 131 PGALDDAAVSEALEL--HKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSGGS 182 (182)
Q Consensus 131 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~~~ 182 (182)
..+....+--+.+.. ......+.|++++||.-++|++.+.++|.++++...|
T Consensus 192 i~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvR 245 (466)
T KOG0466|consen 192 IKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVR 245 (466)
T ss_pred hhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCcc
Confidence 755332222222211 1112356789999999999999999999999886543
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.4e-10 Score=72.00 Aligned_cols=52 Identities=23% Similarity=0.294 Sum_probs=38.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccc--cccccceeeEEEECCEEEEEEECCCC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVST--IPTIGFNVETVQYNNIKFQVWDLGGQ 71 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~D~~g~ 71 (182)
+++++|.+|+|||||+|++.+...... .+..+.....+.... .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence 899999999999999999998876542 222333334444433 6899999994
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.2e-09 Score=73.93 Aligned_cols=151 Identities=17% Similarity=0.109 Sum_probs=96.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc--cc-ccccccceeeEEEECCEEEEEEECCCCC-------CCccchhhhcCCCCe
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEV--VS-TIPTIGFNVETVQYNNIKFQVWDLGGQT-------SIRPYWRCYFPNTEA 87 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~--~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~~-------~~~~~~~~~~~~~d~ 87 (182)
.++.++|-|.+||||++..+.+-.. ++ ..+|.........+++-++++.|.||.- ..........+-|+.
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnl 139 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNL 139 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccE
Confidence 4899999999999999999976542 22 2333334455666889999999999932 122333445577899
Q ss_pred EEEEEeCCCcccHHHHHH-----------------------------------------HHHHH----------------
Q 030120 88 VIYVVDSSDTDRIQTAKE-----------------------------------------EFHAI---------------- 110 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~-----------------------------------------~~~~~---------------- 110 (182)
+++|.|+..+-+-....+ .+.+.
T Consensus 140 i~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~D 219 (358)
T KOG1487|consen 140 IFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDATAD 219 (358)
T ss_pred EEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcchh
Confidence 999999976532211111 00000
Q ss_pred --HhccccC--CCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 030120 111 --LEEEELK--GAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 111 --~~~~~~~--~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
+.....+ -+|++.++||+|-..- +++.- .......+++||-+++|++++++.+.+.+.
T Consensus 220 dLIdvVegnr~yVp~iyvLNkIdsISi---EELdi-------i~~iphavpISA~~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487|consen 220 DLIDVVEGNRIYVPCIYVLNKIDSISI---EELDI-------IYTIPHAVPISAHTGWNFDKLLEKMWEYLK 281 (358)
T ss_pred hhhhhhccCceeeeeeeeecccceeee---eccce-------eeeccceeecccccccchHHHHHHHhhcch
Confidence 0001112 3689999999996432 22111 122335899999999999999999887653
|
|
| >KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.7e-10 Score=75.95 Aligned_cols=84 Identities=33% Similarity=0.549 Sum_probs=69.4
Q ss_pred cccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCc----------ccHHHHHHHHHHHHhccccC
Q 030120 48 TIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDT----------DRIQTAKEEFHAILEEEELK 117 (182)
Q Consensus 48 t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~ 117 (182)
|.++....+.+...+++.+|++|+..-+.-|...+..+.++|||+..+.. .++......+..+....+..
T Consensus 189 TsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~ 268 (379)
T KOG0099|consen 189 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLR 268 (379)
T ss_pred ccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHh
Confidence 44566666777888999999999999999999999999999999987642 23566667777887777778
Q ss_pred CCeEEEEEeCCCCC
Q 030120 118 GAVALIFANKQDLP 131 (182)
Q Consensus 118 ~~~iivv~nK~D~~ 131 (182)
.+.+|+++||-|+.
T Consensus 269 tisvIlFLNKqDll 282 (379)
T KOG0099|consen 269 TISVILFLNKQDLL 282 (379)
T ss_pred hhheeEEecHHHHH
Confidence 89999999999984
|
|
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.2e-10 Score=80.08 Aligned_cols=66 Identities=23% Similarity=0.272 Sum_probs=47.0
Q ss_pred HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccccee--eEEEECCEEEEEEECCCC
Q 030120 5 FSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNV--ETVQYNNIKFQVWDLGGQ 71 (182)
Q Consensus 5 ~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~g~ 71 (182)
+.++.+........+++++|-||+|||||||+|.++......+..+.+. ..+... ..+.++||||-
T Consensus 120 i~~~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~-~~i~LlDtPGi 187 (322)
T COG1161 120 IKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD-DGIYLLDTPGI 187 (322)
T ss_pred HHHHhhcCCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC-CCeEEecCCCc
Confidence 3344444445667899999999999999999999998766444334433 333333 34899999994
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.3e-09 Score=70.31 Aligned_cols=91 Identities=20% Similarity=0.109 Sum_probs=58.8
Q ss_pred hhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEec
Q 030120 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTC 159 (182)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
..++.+|++++|+|+.++.. .....+...+... ..+.|+++|+||+|+.++.........+. ....+..+++|
T Consensus 4 ~~l~~aD~il~VvD~~~p~~--~~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~----~~~~~~~~~iS 76 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMG--TRCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKILS----KEYPTIAFHAS 76 (157)
T ss_pred HhhhhCCEEEEEEECCCCcc--ccCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHHHh----cCCcEEEEEee
Confidence 35688999999999998732 1222333333322 23589999999999964321112222222 11223368899
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 030120 160 AIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 160 a~~~~~v~~l~~~i~~~~ 177 (182)
|+++.|++++++.+.+.+
T Consensus 77 a~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 77 INNPFGKGSLIQLLRQFS 94 (157)
T ss_pred ccccccHHHHHHHHHHHH
Confidence 999999999999997754
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.2e-09 Score=77.95 Aligned_cols=89 Identities=16% Similarity=0.146 Sum_probs=61.3
Q ss_pred hhhcCCCCeEEEEEeCCCcc-cHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEE
Q 030120 79 RCYFPNTEAVIYVVDSSDTD-RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFK 157 (182)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
...+.++|.+++|+|+.++. .......++.... ..+.|+++|+||+|+.+........+.+ ...++.+++
T Consensus 84 R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~----~~~ip~ILVlNK~DLv~~~~~~~~~~~~-----~~~g~~v~~ 154 (352)
T PRK12289 84 RPPVANADQILLVFALAEPPLDPWQLSRFLVKAE----STGLEIVLCLNKADLVSPTEQQQWQDRL-----QQWGYQPLF 154 (352)
T ss_pred chhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEchhcCChHHHHHHHHHH-----HhcCCeEEE
Confidence 44578999999999998765 3334455554442 2478999999999996432112222222 223457999
Q ss_pred ecCCCCCCHHHHHHHHHHH
Q 030120 158 TCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 158 ~Sa~~~~~v~~l~~~i~~~ 176 (182)
+||+++.|++++++.+...
T Consensus 155 iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 155 ISVETGIGLEALLEQLRNK 173 (352)
T ss_pred EEcCCCCCHHHHhhhhccc
Confidence 9999999999999988653
|
|
| >KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.7e-09 Score=70.82 Aligned_cols=131 Identities=16% Similarity=0.273 Sum_probs=76.2
Q ss_pred HHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc----------cccccccee--eEEEECCE--EEEEEECCCC
Q 030120 6 SRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVS----------TIPTIGFNV--ETVQYNNI--KFQVWDLGGQ 71 (182)
Q Consensus 6 ~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~----------~~~t~~~~~--~~~~~~~~--~~~~~D~~g~ 71 (182)
.+.++.+| .|+|++||.+|.|||||+|.++...... ...|+.+.. +.+..+++ ++.++||||.
T Consensus 38 ~k~mk~GF---~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGf 114 (336)
T KOG1547|consen 38 KKTMKTGF---DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGF 114 (336)
T ss_pred HHHHhccC---ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCc
Confidence 34566666 8999999999999999999997544322 111222221 22333444 5678999994
Q ss_pred CCC---ccchhh-----------hc--------------CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEE
Q 030120 72 TSI---RPYWRC-----------YF--------------PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALI 123 (182)
Q Consensus 72 ~~~---~~~~~~-----------~~--------------~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iiv 123 (182)
.+. ...|.. |+ .++|+++|++.++... +..+. .++++... .-+.++-
T Consensus 115 GDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhs-LrplD---ieflkrLt-~vvNvvP 189 (336)
T KOG1547|consen 115 GDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHS-LRPLD---IEFLKRLT-EVVNVVP 189 (336)
T ss_pred ccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCc-cCccc---HHHHHHHh-hhheeee
Confidence 332 222321 11 2469999999987542 11111 22222211 2356899
Q ss_pred EEeCCCCCCCCCHHHHHHHhC
Q 030120 124 FANKQDLPGALDDAAVSEALE 144 (182)
Q Consensus 124 v~nK~D~~~~~~~~~~~~~~~ 144 (182)
|+.|+|...-++...+.+.+.
T Consensus 190 VIakaDtlTleEr~~FkqrI~ 210 (336)
T KOG1547|consen 190 VIAKADTLTLEERSAFKQRIR 210 (336)
T ss_pred eEeecccccHHHHHHHHHHHH
Confidence 999999865544444444443
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.8e-09 Score=75.72 Aligned_cols=86 Identities=23% Similarity=0.262 Sum_probs=58.4
Q ss_pred cCCCCeEEEEEeCCCcccHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecC
Q 030120 82 FPNTEAVIYVVDSSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
..++|.+++|+|+.++...... ..|+..+ .. .++|+++|+||+|+.+. .......... ....+.+++++||
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~-~~---~~ip~iIVlNK~DL~~~--~~~~~~~~~~--~~~~g~~v~~vSA 149 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLA-EA---NGIKPIIVLNKIDLLDD--LEEARELLAL--YRAIGYDVLELSA 149 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEhHHcCCC--HHHHHHHHHH--HHHCCCeEEEEeC
Confidence 4889999999999887654444 3444433 22 47899999999999632 2222111111 1223467999999
Q ss_pred CCCCCHHHHHHHHHH
Q 030120 161 IKGEGLFEGMDWLSN 175 (182)
Q Consensus 161 ~~~~~v~~l~~~i~~ 175 (182)
+++.|++++++.+..
T Consensus 150 ~~g~gi~~L~~~l~g 164 (298)
T PRK00098 150 KEGEGLDELKPLLAG 164 (298)
T ss_pred CCCccHHHHHhhccC
Confidence 999999999987753
|
|
| >KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.5e-08 Score=78.22 Aligned_cols=145 Identities=15% Similarity=0.231 Sum_probs=85.1
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc--cccccccee-------------------------------------
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIGFNV------------------------------------- 53 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t~~~~~------------------------------------- 53 (182)
..+...||++.|..++||||++|+++.++..+ ..+++....
T Consensus 105 l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~ 184 (749)
T KOG0448|consen 105 LARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDK 184 (749)
T ss_pred HhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccc
Confidence 34778899999999999999999998666433 222221000
Q ss_pred -------eEEEEC-------CEEEEEEECCCCCC---CccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhcccc
Q 030120 54 -------ETVQYN-------NIKFQVWDLGGQTS---IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEEL 116 (182)
Q Consensus 54 -------~~~~~~-------~~~~~~~D~~g~~~---~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~ 116 (182)
..+-+. ..++.++|.||... ...-.......+|++++|.++.+.-+ ...+.+ +.....
T Consensus 185 ~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt--~sek~F---f~~vs~ 259 (749)
T KOG0448|consen 185 DLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLT--LSEKQF---FHKVSE 259 (749)
T ss_pred ccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhH--HHHHHH---HHHhhc
Confidence 001111 23778899999543 23334556788999999999987632 333222 222222
Q ss_pred CCCeEEEEEeCCCCCCCCC--HHHHHH---HhCcccccCCceEEEEecCCC
Q 030120 117 KGAVALIFANKQDLPGALD--DAAVSE---ALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 117 ~~~~iivv~nK~D~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
.+..+.++.||+|...... .+.+.. ++.........-.++++||+.
T Consensus 260 ~KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 260 EKPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred cCCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 3566788888889854321 122222 222222233344588899654
|
|
| >KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.2e-09 Score=83.44 Aligned_cols=112 Identities=15% Similarity=0.185 Sum_probs=81.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC------------c---ccccccccceeeE--EEE--CCEEEEEEECCCCCCC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGE------------V---VSTIPTIGFNVET--VQY--NNIKFQVWDLGGQTSI 74 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~------------~---~~~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~ 74 (182)
..+.-+++++.+...|||||..+|+..+ | .++..+.+++.+. +.. ++..+.++|+|||-++
T Consensus 6 ~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf 85 (887)
T KOG0467|consen 6 SEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDF 85 (887)
T ss_pred CCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccch
Confidence 3566789999999999999999996433 1 1122233333222 222 7789999999999999
Q ss_pred ccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCC
Q 030120 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDL 130 (182)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~ 130 (182)
........+-+|+.++++|+..+-- .....++++.+..+..+++|+||+|.
T Consensus 86 ~sevssas~l~d~alvlvdvvegv~-----~qt~~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 86 SSEVSSASRLSDGALVLVDVVEGVC-----SQTYAVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhhhcCCcEEEEeeccccc-----hhHHHHHHHHHHccCceEEEEehhhh
Confidence 9999888899999999999987632 12223344444457789999999993
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.2e-09 Score=75.92 Aligned_cols=56 Identities=23% Similarity=0.408 Sum_probs=40.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc--ccccccceeeEEEECCEEEEEEECCCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIGFNVETVQYNNIKFQVWDLGGQ 71 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~ 71 (182)
...++++++|.||+|||||+|++.+..... ..|.++.....+... ..+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS-DGLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC-CCEEEEECCCc
Confidence 456899999999999999999999877544 333333333334443 36899999996
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.4e-09 Score=76.18 Aligned_cols=57 Identities=19% Similarity=0.376 Sum_probs=41.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc--ccccccceeeEEEECCEEEEEEECCCCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIGFNVETVQYNNIKFQVWDLGGQT 72 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 72 (182)
...++++++|.||+|||||+|++.+..... ..|.++.....+.. +..+.++||||-.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL-GKGLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe-CCcEEEEECCCcC
Confidence 466899999999999999999999987655 33333333333333 3468999999953
|
|
| >KOG0463 consensus GTP-binding protein GP-1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.1e-09 Score=76.33 Aligned_cols=155 Identities=21% Similarity=0.234 Sum_probs=92.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCc------------------cc-cccccccee-----------------eEEEE--
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEV------------------VS-TIPTIGFNV-----------------ETVQY-- 58 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~------------------~~-~~~t~~~~~-----------------~~~~~-- 58 (182)
+++|+++|+..+|||||+-.|..... .+ ..+..+-+. ...+|
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 56999999999999999987754331 11 111111100 11111
Q ss_pred ----CCEEEEEEECCCCCCCccchhhhc--CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030120 59 ----NNIKFQVWDLGGQTSIRPYWRCYF--PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 59 ----~~~~~~~~D~~g~~~~~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
...-+.++|.+|++.|.......+ +-.|..++++-++-+. .....+.+-..+ ...+|+++|++|+|.+.
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgLAL----aL~VPVfvVVTKIDMCP 287 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGLAL----ALHVPVFVVVTKIDMCP 287 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhhhhh----hhcCcEEEEEEeeccCc
Confidence 234678999999999877654433 3468888888887552 111122221111 13689999999999987
Q ss_pred CCCHHHHHHHh----Ccc---------------------cccCCceEEEEecCCCCCCHHHHHHHHHHHH
Q 030120 133 ALDDAAVSEAL----ELH---------------------KIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 133 ~~~~~~~~~~~----~~~---------------------~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 177 (182)
..-.++-...+ +.. +....-||+|.+|..+|.|++. +..+...+
T Consensus 288 ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~L-LkmFLNll 356 (641)
T KOG0463|consen 288 ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPL-LKMFLNLL 356 (641)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHH-HHHHHhhc
Confidence 64333332222 210 1112458899999999999874 44444433
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.8e-09 Score=70.31 Aligned_cols=57 Identities=23% Similarity=0.364 Sum_probs=41.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc--ccccccceeeEEEECCEEEEEEECCCC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIGFNVETVQYNNIKFQVWDLGGQ 71 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~ 71 (182)
.+..++++++|.+|+|||||+|++.+..+.. ..+.++.....+... ..+.++||||.
T Consensus 112 ~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 112 LPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-PGIYLLDTPGI 170 (171)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-CCEEEEECCCC
Confidence 3556799999999999999999999877644 233333333334443 56889999994
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.93 E-value=5e-09 Score=75.25 Aligned_cols=86 Identities=20% Similarity=0.221 Sum_probs=61.9
Q ss_pred hcCCCCeEEEEEeCCCcc-cHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEec
Q 030120 81 YFPNTEAVIYVVDSSDTD-RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTC 159 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
.+.++|.+++|+|+.++. ++.....|+..+.. .++|+++|+||+|+.+. .+...... .....+.+++.+|
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~--~~~~~~~~---~~~~~g~~v~~vS 145 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDD--EEEELELV---EALALGYPVLAVS 145 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCCh--HHHHHHHH---HHHhCCCeEEEEE
Confidence 478899999999999887 66776766665533 36899999999999654 11111111 1112446899999
Q ss_pred CCCCCCHHHHHHHHHH
Q 030120 160 AIKGEGLFEGMDWLSN 175 (182)
Q Consensus 160 a~~~~~v~~l~~~i~~ 175 (182)
|+++.|+++++..+..
T Consensus 146 A~~g~gi~~L~~~L~~ 161 (287)
T cd01854 146 AKTGEGLDELREYLKG 161 (287)
T ss_pred CCCCccHHHHHhhhcc
Confidence 9999999999887753
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.8e-09 Score=75.60 Aligned_cols=88 Identities=24% Similarity=0.232 Sum_probs=63.3
Q ss_pred CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCC
Q 030120 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
.++|.+++|+++....++.....|+.... ..++|.++|+||+|+.+......+....... ...+.+++++||++
T Consensus 119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y--~~~g~~v~~vSA~t 192 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNIIDRYLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDIY--RNIGYRVLMVSSHT 192 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHHHH--HhCCCeEEEEeCCC
Confidence 56899999999988878888887766442 2468999999999997542222222222211 22346899999999
Q ss_pred CCCHHHHHHHHHHH
Q 030120 163 GEGLFEGMDWLSNT 176 (182)
Q Consensus 163 ~~~v~~l~~~i~~~ 176 (182)
+.|++++++.|...
T Consensus 193 g~GideL~~~L~~k 206 (347)
T PRK12288 193 GEGLEELEAALTGR 206 (347)
T ss_pred CcCHHHHHHHHhhC
Confidence 99999999988753
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.7e-09 Score=72.26 Aligned_cols=54 Identities=26% Similarity=0.439 Sum_probs=37.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCc----------ccccccccceeeEEEECCEEEEEEECCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEV----------VSTIPTIGFNVETVQYNNIKFQVWDLGG 70 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~----------~~~~~t~~~~~~~~~~~~~~~~~~D~~g 70 (182)
+..+++++|.+|+|||||+|++.+... .+..|.++.....+.... .+.++||||
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~DtPG 189 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN-GKKLYDTPG 189 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC-CCEEEeCcC
Confidence 457899999999999999999987542 113333333334444432 689999998
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.7e-09 Score=67.78 Aligned_cols=56 Identities=29% Similarity=0.382 Sum_probs=40.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEE-EECCEEEEEEECCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETV-QYNNIKFQVWDLGG 70 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~D~~g 70 (182)
....+++++|.+|+|||||+|++.++......++.+.+.... ...+..+.+|||||
T Consensus 99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpG 155 (156)
T cd01859 99 GKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLDTPG 155 (156)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence 456789999999999999999999876554444444332211 11334789999998
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.89 E-value=1e-08 Score=67.16 Aligned_cols=56 Identities=21% Similarity=0.319 Sum_probs=39.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc--ccccccceeeEEEECCEEEEEEECCC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIGFNVETVQYNNIKFQVWDLGG 70 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g 70 (182)
.....+++++|.+|+|||||+|.+.+..... ..+.++.....+... ..+.++||||
T Consensus 97 ~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtPG 154 (155)
T cd01849 97 LKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD-NKIKLLDTPG 154 (155)
T ss_pred cccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec-CCEEEEECCC
Confidence 3567899999999999999999999876432 223222223333332 5689999998
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.3e-08 Score=73.65 Aligned_cols=157 Identities=23% Similarity=0.257 Sum_probs=96.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-------------------c-----ccccccee--eEEEE-----------
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-------------------T-----IPTIGFNV--ETVQY----------- 58 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-------------------~-----~~t~~~~~--~~~~~----------- 58 (182)
-.++++++|...+|||||+-.|..+.... . ....+++. ..+.|
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 35699999999999999998886443110 0 00111111 11112
Q ss_pred -CCEEEEEEECCCCCCCccchhhhcCC--CCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC
Q 030120 59 -NNIKFQVWDLGGQTSIRPYWRCYFPN--TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD 135 (182)
Q Consensus 59 -~~~~~~~~D~~g~~~~~~~~~~~~~~--~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~ 135 (182)
...-+.++|.+|+..|.......+.. .|..++++++..+..- ..++.+--+ .. -++|..++++|+|+.+...
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~-tTrEHLgl~-~A---L~iPfFvlvtK~Dl~~~~~ 320 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITW-TTREHLGLI-AA---LNIPFFVLVTKMDLVDRQG 320 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcc-ccHHHHHHH-HH---hCCCeEEEEEeeccccchh
Confidence 23567899999999998776555543 5899999999877431 122222222 22 3799999999999987633
Q ss_pred HHHHH----HHhC---------------------cccccCCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 030120 136 DAAVS----EALE---------------------LHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 136 ~~~~~----~~~~---------------------~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
.+... ..+. .........|+|.+|+.+|+|++- +..+...+.
T Consensus 321 ~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~l-l~~fLn~Ls 387 (591)
T KOG1143|consen 321 LKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRL-LRTFLNCLS 387 (591)
T ss_pred HHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhH-HHHHHhhcC
Confidence 32222 1111 112234567899999999999874 444444443
|
|
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.8e-08 Score=73.94 Aligned_cols=78 Identities=18% Similarity=0.152 Sum_probs=59.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc-cc---ccccccceeeEEEECC-----------------EEEEEEECCCCC----
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEV-VS---TIPTIGFNVETVQYNN-----------------IKFQVWDLGGQT---- 72 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~-~~---~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~---- 72 (182)
++++|+|.||+|||||+|.+.+... .. ...|...+...+.+.+ ..+.+.|.||.-
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 6899999999999999999988765 33 3334556666665533 468999999943
Q ss_pred ---CCccchhhhcCCCCeEEEEEeCC
Q 030120 73 ---SIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 73 ---~~~~~~~~~~~~~d~ii~v~d~~ 95 (182)
.........++.+|+++.|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 23445566789999999999985
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-08 Score=77.95 Aligned_cols=113 Identities=18% Similarity=0.133 Sum_probs=81.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-----c---c-------------cccccceeeEEEECCEEEEEEECCCCCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVV-----S---T-------------IPTIGFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~-----~---~-------------~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 73 (182)
.+.-+|++.-.-.+||||+-++.+...-. . . .-|+...-..+.+...++.++|||||-.
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 46668999999999999999998632210 0 0 0011122234556789999999999999
Q ss_pred CccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030120 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
+-......++--|+.++++++..+- ..+....++++.+ .++|.+.++||.|...
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GV-qsQt~tV~rQ~~r----y~vP~i~FiNKmDRmG 170 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGV-ESQTETVWRQMKR----YNVPRICFINKMDRMG 170 (721)
T ss_pred EEEEehhhhhhccCeEEEEEcccce-ehhhHHHHHHHHh----cCCCeEEEEehhhhcC
Confidence 9998899999999999999987662 1233344444433 3799999999999753
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-08 Score=66.37 Aligned_cols=82 Identities=20% Similarity=0.313 Sum_probs=53.4
Q ss_pred CeEEEEEeCCCcccHHHHHHHHH-HHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCC
Q 030120 86 EAVIYVVDSSDTDRIQTAKEEFH-AILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
|++++|+|+.++.+.. ..++. ..... .++|+++|+||+|+.+. .++........ ......++.+||+++.
T Consensus 1 Dvvl~VvD~~~p~~~~--~~~i~~~~~~~---~~~p~IiVlNK~Dl~~~---~~~~~~~~~~~-~~~~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTR--SPDIERVLIKE---KGKKLILVLNKADLVPK---EVLRKWLAYLR-HSYPTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCcccc--CHHHHHHHHhc---CCCCEEEEEechhcCCH---HHHHHHHHHHH-hhCCceEEEEeccCCc
Confidence 6899999998875432 22333 22222 46899999999999543 22222111111 1124568999999999
Q ss_pred CHHHHHHHHHHH
Q 030120 165 GLFEGMDWLSNT 176 (182)
Q Consensus 165 ~v~~l~~~i~~~ 176 (182)
|++++.+.+.+.
T Consensus 72 gi~~L~~~i~~~ 83 (155)
T cd01849 72 GIEKKESAFTKQ 83 (155)
T ss_pred ChhhHHHHHHHH
Confidence 999999988764
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.2e-08 Score=72.87 Aligned_cols=95 Identities=15% Similarity=0.273 Sum_probs=64.5
Q ss_pred EEEEEEECCCC-------------CCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeC
Q 030120 61 IKFQVWDLGGQ-------------TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANK 127 (182)
Q Consensus 61 ~~~~~~D~~g~-------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK 127 (182)
.++.++|.||. +....+...++.+.++||+|+.-... +..+....++.....-.+...|+|+||
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSV---DAERSnVTDLVsq~DP~GrRTIfVLTK 488 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSV---DAERSIVTDLVSQMDPHGRRTIFVLTK 488 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCc---chhhhhHHHHHHhcCCCCCeeEEEEee
Confidence 58899999992 23345567899999999999965543 445555566666655567889999999
Q ss_pred CCCCCC--CCHHHHHHHhCcccccCCceEEEEe
Q 030120 128 QDLPGA--LDDAAVSEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 128 ~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
.|+.+. ..+..+...+.-..+......||-+
T Consensus 489 VDlAEknlA~PdRI~kIleGKLFPMKALGYfaV 521 (980)
T KOG0447|consen 489 VDLAEKNVASPSRIQQIIEGKLFPMKALGYFAV 521 (980)
T ss_pred cchhhhccCCHHHHHHHHhcCccchhhcceeEE
Confidence 999654 3566777766544333333345544
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.9e-09 Score=76.49 Aligned_cols=98 Identities=20% Similarity=0.202 Sum_probs=63.9
Q ss_pred CCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC-CHHHHHHHhCccccc
Q 030120 71 QTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-DDAAVSEALELHKIK 149 (182)
Q Consensus 71 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~ 149 (182)
.+.+......+...++++++|+|+.+... . |...+.... .+.|+++|+||+|+.+.. ...++...+... ..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~--s---~~~~l~~~~--~~~piilV~NK~DLl~k~~~~~~~~~~l~~~-~k 121 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG--S---LIPELKRFV--GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKR-AK 121 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC--C---ccHHHHHHh--CCCCEEEEEEchhhCCCCCCHHHHHHHHHHH-HH
Confidence 34566777778889999999999976531 1 222222221 257899999999996542 233333322111 11
Q ss_pred CCc---eEEEEecCCCCCCHHHHHHHHHHH
Q 030120 150 NRQ---WAIFKTCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 150 ~~~---~~~~~~Sa~~~~~v~~l~~~i~~~ 176 (182)
..+ ..++.+||+++.|++++++.|.+.
T Consensus 122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 122 ELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 112 248999999999999999998764
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.9e-08 Score=70.91 Aligned_cols=81 Identities=22% Similarity=0.306 Sum_probs=62.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEEC-----------------CEEEEEEECCC----
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYN-----------------NIKFQVWDLGG---- 70 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~-----------------~~~~~~~D~~g---- 70 (182)
.+.++++|||-||+|||||+|.+....... ...|++.+...+... .-.+.++|++|
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 478899999999999999999998776544 344777777666552 24678999998
Q ss_pred ---CCCCccchhhhcCCCCeEEEEEeCC
Q 030120 71 ---QTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 71 ---~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (182)
.+.+.....+-++.+|+++-|+++-
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEec
Confidence 2344555666778999999999875
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.1e-08 Score=73.27 Aligned_cols=92 Identities=20% Similarity=0.111 Sum_probs=61.2
Q ss_pred cchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEE
Q 030120 76 PYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAI 155 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (182)
......+..+|++++|+|+..+.+... ..+...+ .+.|+++|+||+|+.+........+.+.. .+.++
T Consensus 13 ~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~-----~~~~v 80 (276)
T TIGR03596 13 REIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEE-----KGIKA 80 (276)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHH-----cCCeE
Confidence 345667889999999999987643221 2223332 25799999999998543111221112211 23468
Q ss_pred EEecCCCCCCHHHHHHHHHHHHhc
Q 030120 156 FKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 156 ~~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
+.+||+++.|++++.+.+.+.+++
T Consensus 81 i~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 81 LAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred EEEECCCcccHHHHHHHHHHHHHH
Confidence 999999999999999998877653
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.4e-07 Score=64.24 Aligned_cols=84 Identities=17% Similarity=0.101 Sum_probs=55.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC--Cccc----ccccccceeeEEEE---CCEEEEEEECCCCCCCcc------chh
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG--EVVS----TIPTIGFNVETVQY---NNIKFQVWDLGGQTSIRP------YWR 79 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~--~~~~----~~~t~~~~~~~~~~---~~~~~~~~D~~g~~~~~~------~~~ 79 (182)
.+-.-|+|+|++++|||+|+|.+++. .+.. ...|.++-...... .+..+.++||+|...... ...
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 45567889999999999999999998 5543 12234433333333 357899999999654322 122
Q ss_pred hhcC--CCCeEEEEEeCCCcc
Q 030120 80 CYFP--NTEAVIYVVDSSDTD 98 (182)
Q Consensus 80 ~~~~--~~d~ii~v~d~~~~~ 98 (182)
..+. -++++||..+.....
T Consensus 85 ~~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 85 FALATLLSSVLIYNSWETILG 105 (224)
T ss_pred HHHHHHHhCEEEEeccCcccH
Confidence 2222 378999988886554
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.1e-08 Score=73.19 Aligned_cols=141 Identities=15% Similarity=0.078 Sum_probs=82.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
+..+-++++|+||+|||||++++..+..-.....+.--...+.....++.+..+|. . ........+-+|.+++++|.
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~--D-l~~miDvaKIaDLVlLlIdg 143 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPS--D-LHQMIDVAKIADLVLLLIDG 143 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeChH--H-HHHHHhHHHhhheeEEEecc
Confidence 46778899999999999999999876533311111111122223567899999993 2 22334455778999999999
Q ss_pred CCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC-CHHHHHHHhCccc--ccCCceEEEEecCCC
Q 030120 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-DDAAVSEALELHK--IKNRQWAIFKTCAIK 162 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~ 162 (182)
+=+- +-..-.+..++...+. ..++=|+|..|+.... ........++-.. .-..+..+|..|...
T Consensus 144 nfGf--EMETmEFLnil~~HGm--PrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 144 NFGF--EMETMEFLNILISHGM--PRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred ccCc--eehHHHHHHHHhhcCC--CceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 8663 2222223334444332 3467789999996542 2233333222111 122445577777544
|
|
| >KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.8e-08 Score=72.49 Aligned_cols=156 Identities=15% Similarity=0.153 Sum_probs=101.4
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCC-----------------------ccc-----------ccccccceeeEEEE
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGE-----------------------VVS-----------TIPTIGFNVETVQY 58 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~-----------------------~~~-----------~~~t~~~~~~~~~~ 58 (182)
++...+++.++|...+||||+-..+.... +.+ ...|++.....++-
T Consensus 75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt 154 (501)
T KOG0459|consen 75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET 154 (501)
T ss_pred CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence 35788999999999999999988875211 111 11244445555666
Q ss_pred CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCccc---H---HHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030120 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR---I---QTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
...++.+.|.|||..+-........++|.-++|+++...+- | .+.+...... +.. .-...|+++||.|...
T Consensus 155 e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~La-kt~--gv~~lVv~vNKMddPt 231 (501)
T KOG0459|consen 155 ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLA-KTA--GVKHLIVLINKMDDPT 231 (501)
T ss_pred cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHH-Hhh--ccceEEEEEEeccCCc
Confidence 78899999999999998888888889999999999854321 1 1112111111 111 2357899999999864
Q ss_pred CCCHHHHHHHh--------C-cccccCCceEEEEecCCCCCCHHHHHH
Q 030120 133 ALDDAAVSEAL--------E-LHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 133 ~~~~~~~~~~~--------~-~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 171 (182)
.....+..++. . ..........++++|..+|.++++..+
T Consensus 232 vnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 232 VNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred cCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 33322222211 1 112233566799999999999887543
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.6e-08 Score=65.08 Aligned_cols=91 Identities=19% Similarity=0.123 Sum_probs=59.0
Q ss_pred cchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEE
Q 030120 76 PYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAI 155 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (182)
......++++|++++|+|+.++..... ..+.... .+.|+++|+||+|+.+........+.+. .....+
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~~~~~~~--~~i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~-----~~~~~v 78 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPLSSRN--PLLEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFE-----SKGEKV 78 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccCccCcCC--hhhHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHH-----hcCCeE
Confidence 344567789999999999987643211 1111111 2478999999999964311111111111 112458
Q ss_pred EEecCCCCCCHHHHHHHHHHHHh
Q 030120 156 FKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 156 ~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
+.+||+++.|++++.+.+.+.++
T Consensus 79 i~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 79 LFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred EEEECCCcccHHHHHHHHHHHHH
Confidence 99999999999999999988753
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.7e-08 Score=63.43 Aligned_cols=79 Identities=16% Similarity=0.207 Sum_probs=48.6
Q ss_pred hhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEe
Q 030120 79 RCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
...+..+|++++|+|+.++.+.. ...+..++.... .++|+++|+||+|+.++.......+.+ ...+..++++
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~--~~~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~-----~~~~~~ii~i 77 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFR--PPDLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYF-----KKEGIVVVFF 77 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccC--CHHHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHH-----HhcCCeEEEE
Confidence 45678899999999998875432 222333333221 468999999999985432111111222 1223568999
Q ss_pred cCCCCCC
Q 030120 159 CAIKGEG 165 (182)
Q Consensus 159 Sa~~~~~ 165 (182)
||+++.+
T Consensus 78 Sa~~~~~ 84 (141)
T cd01857 78 SALKENA 84 (141)
T ss_pred EecCCCc
Confidence 9998753
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >cd03112 CobW_like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.9e-07 Score=61.33 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030120 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~ 40 (182)
++++|..|+|||||++.+...
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 578999999999999998754
|
The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.1e-07 Score=68.40 Aligned_cols=99 Identities=20% Similarity=0.177 Sum_probs=63.6
Q ss_pred CCCCC-CCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcc
Q 030120 68 LGGQT-SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELH 146 (182)
Q Consensus 68 ~~g~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~ 146 (182)
.|||. .........+..+|++++|+|+..+.+.. ...+.+... +.|+++|+||+|+.+........+.+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~--~~~l~~~~~-----~kp~iiVlNK~DL~~~~~~~~~~~~~~-- 77 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSE--NPMIDKIIG-----NKPRLLILNKSDLADPEVTKKWIEYFE-- 77 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCC--ChhHHHHhC-----CCCEEEEEEchhcCCHHHHHHHHHHHH--
Confidence 35543 22334556778999999999998764322 122333322 578999999999854311112211121
Q ss_pred cccCCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 030120 147 KIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 147 ~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
..+.+++.+||+++.|++++.+.+.+.++
T Consensus 78 ---~~~~~vi~vSa~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 78 ---EQGIKALAINAKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred ---HcCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 11346899999999999999998887664
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.9e-08 Score=70.15 Aligned_cols=56 Identities=11% Similarity=0.156 Sum_probs=35.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc--cccc-------ccceeeEEEECCEEEEEEECCCCCCCc
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS--TIPT-------IGFNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t-------~~~~~~~~~~~~~~~~~~D~~g~~~~~ 75 (182)
.++++|.+|+|||||+|+|++..... ..+. ++....-+.... ...++||||...+.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~-~~~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPH-GGDLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecC-CCEEEECCCCCccc
Confidence 37899999999999999999876432 1111 111222222321 23599999976654
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.1e-07 Score=70.03 Aligned_cols=55 Identities=20% Similarity=0.178 Sum_probs=35.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc--cccc-------ccceeeEEEECCEEEEEEECCCCCCC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS--TIPT-------IGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t-------~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (182)
.++++|++|+|||||+|+|.+..... ..+. ++.....+.... ...++||||...+
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~-g~~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPN-GGLLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCC-CcEEEeCCCcccc
Confidence 37999999999999999999765332 1111 122223333322 2379999995443
|
|
| >KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.9e-08 Score=72.89 Aligned_cols=120 Identities=23% Similarity=0.144 Sum_probs=84.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC--------ccc-------------ccccccceeeEEEECCEEEEEEECCCCCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGE--------VVS-------------TIPTIGFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~--------~~~-------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 73 (182)
.+-.+|+|+..-.+||||...+++.-. +.. ..-|+...-..++|++.++.++||||+-.
T Consensus 35 akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvd 114 (753)
T KOG0464|consen 35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVD 114 (753)
T ss_pred hhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcce
Confidence 355689999999999999999986311 100 01122222344667899999999999999
Q ss_pred CccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHH
Q 030120 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAV 139 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~ 139 (182)
+.-..+.+++--|+++.|||++-+-.-+... .| ++....++|-..++||.|.........+
T Consensus 115 f~leverclrvldgavav~dasagve~qtlt-vw----rqadk~~ip~~~finkmdk~~anfe~av 175 (753)
T KOG0464|consen 115 FRLEVERCLRVLDGAVAVFDASAGVEAQTLT-VW----RQADKFKIPAHCFINKMDKLAANFENAV 175 (753)
T ss_pred EEEEHHHHHHHhcCeEEEEeccCCcccceee-ee----hhccccCCchhhhhhhhhhhhhhhhhHH
Confidence 9999999999999999999998763222222 22 2333357999999999998755444333
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.3e-07 Score=65.26 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=35.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc--ccc-------cccceeeEEEECCEEEEEEECCCCCCCc
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS--TIP-------TIGFNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~-------t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 75 (182)
..++++|++|+|||||+|++.+..... ..+ -++.....+... ...++||||-..+.
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~--~~~liDtPG~~~~~ 185 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFH--GGLIADTPGFNEFG 185 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcC--CcEEEeCCCccccC
Confidence 368899999999999999998765322 111 112222223332 24799999965443
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.6e-08 Score=71.72 Aligned_cols=54 Identities=20% Similarity=0.145 Sum_probs=42.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEE-CCEEEEEEECCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGG 70 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g 70 (182)
.+.|++||-||+||||+||+|.|.+..+.+.|.+-+.+-.++ -...+.+.||||
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~~v~LCDCPG 368 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSPSVCLCDCPG 368 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCCCceecCCCC
Confidence 589999999999999999999999988866666644333222 335788999999
|
|
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.4e-07 Score=61.48 Aligned_cols=56 Identities=16% Similarity=0.094 Sum_probs=33.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc---ccc------cccceeeEEEECCEEEEEEECCCCCCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS---TIP------TIGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~------t~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (182)
-.++++|++|||||||+|.|.+..... ... .+......+... ....++||||...+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~-~g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLP-DGGYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEET-TSEEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecC-CCcEEEECCCCCcc
Confidence 578899999999999999999874221 111 111122223332 24688999995443
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=7.8e-07 Score=65.05 Aligned_cols=95 Identities=19% Similarity=0.154 Sum_probs=53.8
Q ss_pred CEEEEEEECCCCCCCccch----hhh--cCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 60 NIKFQVWDLGGQTSIRPYW----RCY--FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~----~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
+.++.++||+|........ ... ..+.|.+++|+|+..+.. .......+.... ..--+|+||.|....
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d---~~~~a~~f~~~~----~~~giIlTKlD~~~~ 294 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND---AVEQAREFNEAV----GIDGVILTKVDADAK 294 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh---HHHHHHHHHhcC----CCCEEEEeeecCCCC
Confidence 4679999999976432221 111 235789999999977632 222223332221 235789999998644
Q ss_pred CCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 134 LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
... -+..... .+.|+..++ +|++++++.
T Consensus 295 ~G~-~ls~~~~------~~~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 295 GGA-ALSIAYV------IGKPILFLG--VGQGYDDLI 322 (336)
T ss_pred ccH-HHHHHHH------HCcCEEEEe--CCCChhhcc
Confidence 322 1111111 234566665 788887664
|
|
| >KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.5e-07 Score=64.64 Aligned_cols=114 Identities=18% Similarity=0.282 Sum_probs=70.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccc-----cccccceeeEEEE--CC--EEEEEEECCCCCC-------Ccc---
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVST-----IPTIGFNVETVQY--NN--IKFQVWDLGGQTS-------IRP--- 76 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~~--~~--~~~~~~D~~g~~~-------~~~--- 76 (182)
-.|+|+.+|..|.|||||+++|++-.+... .|+.......++. .+ .++.++||.|..+ +..
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd 120 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD 120 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence 378999999999999999999999887652 2222222222222 23 4667899998321 111
Q ss_pred ----chhhh-------------c--CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC
Q 030120 77 ----YWRCY-------------F--PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL 134 (182)
Q Consensus 77 ----~~~~~-------------~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 134 (182)
....| + .+.|+++|.+.++.. ++........+-+. .++.+|-|+.|+|.....
T Consensus 121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH-~LKslDLvtmk~Ld----skVNIIPvIAKaDtisK~ 192 (406)
T KOG3859|consen 121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH-SLKSLDLVTMKKLD----SKVNIIPVIAKADTISKE 192 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc-chhHHHHHHHHHHh----hhhhhHHHHHHhhhhhHH
Confidence 11111 1 357999999988754 23444333222222 357788899999976543
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.2e-07 Score=68.87 Aligned_cols=110 Identities=11% Similarity=0.165 Sum_probs=60.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCc-------ccccccccceeeEEEECCEEEEEEECCCCCCCccch----h----hh
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEV-------VSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW----R----CY 81 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~----~----~~ 81 (182)
..++.++|.+|+|||||+|++.+... .+..|.++.....+.. ...+.++||||-....... . ..
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~-~~~~~l~DtPG~~~~~~~~~~l~~~~l~~~ 232 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL-DDGHSLYDTPGIINSHQMAHYLDKKDLKYI 232 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe-CCCCEEEECCCCCChhHhhhhcCHHHHhhc
Confidence 36899999999999999999987532 1133333333333333 2346799999954322111 0 11
Q ss_pred --cCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030120 82 --FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 82 --~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
-+......+.++..+.-.+..... +......+..+.++.++.+...
T Consensus 233 ~~~~~i~~~~~~l~~~q~~~~ggl~~-----~d~~~~~~~~~~~~~~~~~~~h 280 (360)
T TIGR03597 233 TPKKEIKPKTYQLNPNQTLFLGGLAR-----FDYLKGEKTSFTFYVSNELNIH 280 (360)
T ss_pred CCCCccCceEEEeCCCCEEEEceEEE-----EEEecCCceEEEEEccCCceeE
Confidence 133566677776654432222110 1111113456677777776543
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.9e-07 Score=68.34 Aligned_cols=54 Identities=22% Similarity=0.382 Sum_probs=36.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC-----c--ccccccccceeeEEEECCEEEEEEECCCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE-----V--VSTIPTIGFNVETVQYNNIKFQVWDLGGQ 71 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~-----~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g~ 71 (182)
..++.++|.+|+|||||+|+|.+.. . .+..|.++.....+...+ ...++||||-
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~-~~~l~DTPGi 220 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD-GSFLYDTPGI 220 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC-CcEEEECCCc
Confidence 4589999999999999999998543 1 123343344444444432 3479999995
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.5e-07 Score=67.37 Aligned_cols=88 Identities=22% Similarity=0.194 Sum_probs=53.8
Q ss_pred CCCC-eEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC-HHHHHHHhCcccc--cCCceEEEEe
Q 030120 83 PNTE-AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKI--KNRQWAIFKT 158 (182)
Q Consensus 83 ~~~d-~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~ 158 (182)
...+ .+++|+|+.+.. ......+..+. .+.|+++|+||+|+.+... ..++......... ......++.+
T Consensus 67 ~~~~~lIv~VVD~~D~~--~s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~v 139 (365)
T PRK13796 67 GDSDALVVNVVDIFDFN--GSWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLI 139 (365)
T ss_pred cccCcEEEEEEECccCC--CchhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEE
Confidence 4444 999999998753 12222222222 2578999999999965322 2233222211110 1111258999
Q ss_pred cCCCCCCHHHHHHHHHHHH
Q 030120 159 CAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 159 Sa~~~~~v~~l~~~i~~~~ 177 (182)
||+++.|++++++.|.+..
T Consensus 140 SAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 140 SAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred ECCCCCCHHHHHHHHHHhc
Confidence 9999999999999997653
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.8e-06 Score=64.03 Aligned_cols=84 Identities=23% Similarity=0.264 Sum_probs=55.5
Q ss_pred cCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCC
Q 030120 82 FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
..++|.+++|+++..+.........+.... . .+.+.++|+||+|+.+. ..+..+.+... ..+.+++.+|++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~-~---~~i~piIVLNK~DL~~~--~~~~~~~~~~~---~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAW-E---SGAEPVIVLTKADLCED--AEEKIAEVEAL---APGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHH-H---cCCCEEEEEEChhcCCC--HHHHHHHHHHh---CCCCcEEEEECC
Confidence 477899999999975543333333333332 2 46777999999999754 21222222211 345679999999
Q ss_pred CCCCHHHHHHHHH
Q 030120 162 KGEGLFEGMDWLS 174 (182)
Q Consensus 162 ~~~~v~~l~~~i~ 174 (182)
++.|++++..++.
T Consensus 181 ~g~gl~~L~~~L~ 193 (356)
T PRK01889 181 DGEGLDVLAAWLS 193 (356)
T ss_pred CCccHHHHHHHhh
Confidence 9999999888874
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.1e-07 Score=64.66 Aligned_cols=139 Identities=21% Similarity=0.191 Sum_probs=75.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC------cc--cccc--------------cccceeeEE-----------------
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE------VV--STIP--------------TIGFNVETV----------------- 56 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~------~~--~~~~--------------t~~~~~~~~----------------- 56 (182)
...-++++|++|+||||++..+.... +. ...+ ..+......
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999885311 10 0000 000110000
Q ss_pred EECCEEEEEEECCCCCCCccc----hhhh--------cCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEE
Q 030120 57 QYNNIKFQVWDLGGQTSIRPY----WRCY--------FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIF 124 (182)
Q Consensus 57 ~~~~~~~~~~D~~g~~~~~~~----~~~~--------~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv 124 (182)
...+.++.++||||....... .... -...+..++|+|++.+. +... ....+... -.+.-+|
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~-~a~~f~~~----~~~~giI 265 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALS-QAKAFHEA----VGLTGII 265 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHH-HHHHHHhh----CCCCEEE
Confidence 014578999999997543322 1111 23468899999999763 2333 22333222 1345799
Q ss_pred EeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 125 ANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 125 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
+||.|...... .+..... ..+.|+..++ +|++++++-
T Consensus 266 lTKlD~t~~~G--~~l~~~~-----~~~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 266 LTKLDGTAKGG--VVFAIAD-----ELGIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred EECCCCCCCcc--HHHHHHH-----HHCCCEEEEe--CCCChhhCc
Confidence 99999643321 1111211 1244566666 777776553
|
|
| >TIGR03348 VI_IcmF type VI secretion protein IcmF | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.4e-06 Score=72.26 Aligned_cols=111 Identities=17% Similarity=0.187 Sum_probs=64.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCccccc-----ccccc-eeeEEEE-CCEEEEEEECCCCCC--------Cccchhhhc--
Q 030120 20 ILVLGLDNAGKTTILYRLQMGEVVSTI-----PTIGF-NVETVQY-NNIKFQVWDLGGQTS--------IRPYWRCYF-- 82 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~~~~~~~-----~t~~~-~~~~~~~-~~~~~~~~D~~g~~~--------~~~~~~~~~-- 82 (182)
.+|+|++|+||||+++.- |-.++-.. .+.+. ....+++ -..+-.++||+|... ....|..++
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~~ 192 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLGL 192 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCCEEEEcCCCccccCCCcccccHHHHHHHHHH
Confidence 579999999999999987 33332211 11111 0111222 224567999999332 122344333
Q ss_pred -------CCCCeEEEEEeCCCccc--H-------HHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030120 83 -------PNTEAVIYVVDSSDTDR--I-------QTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 83 -------~~~d~ii~v~d~~~~~s--~-------~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
+-.++||+++|+.+--. - ...+..+.++.... ....||.+++||+|+..
T Consensus 193 L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~l-g~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 193 LRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQL-GARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHh-CCCCCEEEEEecchhhc
Confidence 34799999999974311 1 12233333443332 25799999999999874
|
Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. |
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.7e-06 Score=64.00 Aligned_cols=110 Identities=17% Similarity=0.153 Sum_probs=63.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh------cCCcc--cccc--------------cccceeeEEE-----------------
Q 030120 17 EARILVLGLDNAGKTTILYRLQ------MGEVV--STIP--------------TIGFNVETVQ----------------- 57 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~------~~~~~--~~~~--------------t~~~~~~~~~----------------- 57 (182)
..-|+++|.+|+||||++..|. +..+. ...+ ..+.......
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 4578899999999999999885 22211 0100 0111001000
Q ss_pred ECCEEEEEEECCCCCCCccch----hhh--cCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q 030120 58 YNNIKFQVWDLGGQTSIRPYW----RCY--FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 58 ~~~~~~~~~D~~g~~~~~~~~----~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 131 (182)
..+.++.++||||........ ..+ ...++-+++|+|+..++.-.... ..+... -.+--+|+||.|..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a---~~F~~~----~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQA---KAFKDS----VDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHH---HHHHhc----cCCcEEEEECccCC
Confidence 025789999999976543322 111 23568899999998764322222 222221 13568899999975
Q ss_pred CC
Q 030120 132 GA 133 (182)
Q Consensus 132 ~~ 133 (182)
..
T Consensus 253 ar 254 (429)
T TIGR01425 253 AK 254 (429)
T ss_pred CC
Confidence 43
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.8e-07 Score=57.97 Aligned_cols=58 Identities=17% Similarity=0.193 Sum_probs=36.9
Q ss_pred CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCC
Q 030120 60 NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQD 129 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D 129 (182)
+.++.++||+|.... ...++..+|.++++..+.-.+...-.. ..++ ...-++++||+|
T Consensus 91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~k---~~~~------~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAIK---AGIM------EIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHhh---hhHh------hhcCEEEEeCCC
Confidence 578999999985422 234778899999998887332211111 1122 223489999997
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >KOG2423 consensus Nucleolar GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.7e-07 Score=68.48 Aligned_cols=91 Identities=15% Similarity=0.196 Sum_probs=59.1
Q ss_pred hHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccccccccee--eEEEECCEEEEEEECCCCCC--Cccchh
Q 030120 4 MFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNV--ETVQYNNIKFQVWDLGGQTS--IRPYWR 79 (182)
Q Consensus 4 ~~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~g~~~--~~~~~~ 79 (182)
++++|-+-.+..+.+.|+++|-||+||||+||+|-.++++...|-.+.+. ..+. --.++.++||||.-- ......
T Consensus 294 llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYIt-LmkrIfLIDcPGvVyps~dset~ 372 (572)
T KOG2423|consen 294 LLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYIT-LMKRIFLIDCPGVVYPSSDSETD 372 (572)
T ss_pred HHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHH-HHhceeEecCCCccCCCCCchHH
Confidence 45555555568899999999999999999999999999887544333111 1111 235788999999431 123333
Q ss_pred hhcCCCCeEEEEEeCCCcc
Q 030120 80 CYFPNTEAVIYVVDSSDTD 98 (182)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~ 98 (182)
..+ .+++-|=.+.+++
T Consensus 373 ivL---kGvVRVenv~~pe 388 (572)
T KOG2423|consen 373 IVL---KGVVRVENVKNPE 388 (572)
T ss_pred HHh---hceeeeeecCCHH
Confidence 333 2556666666653
|
|
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.2e-05 Score=52.01 Aligned_cols=147 Identities=18% Similarity=0.259 Sum_probs=72.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEE--CCEEEEEEECC-CC-----------CC-------
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY--NNIKFQVWDLG-GQ-----------TS------- 73 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~D~~-g~-----------~~------- 73 (182)
....+|.|.|+||+||||++..+...--..-..--++....+.- ...-|.++|+. |. ..
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~ 82 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVN 82 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEee
Confidence 34679999999999999999988532111101111122222222 12333444444 21 11
Q ss_pred ---Cc----cchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcc
Q 030120 74 ---IR----PYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELH 146 (182)
Q Consensus 74 ---~~----~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~ 146 (182)
+. ......++.+|++| +|=--+ ++-....+.+.+........|++.++.+.+..+ ..+++...
T Consensus 83 v~~le~i~~~al~rA~~~aDvII--IDEIGp--MElks~~f~~~ve~vl~~~kpliatlHrrsr~P--~v~~ik~~---- 152 (179)
T COG1618 83 VEGLEEIAIPALRRALEEADVII--IDEIGP--MELKSKKFREAVEEVLKSGKPLIATLHRRSRHP--LVQRIKKL---- 152 (179)
T ss_pred HHHHHHHhHHHHHHHhhcCCEEE--Eecccc--hhhccHHHHHHHHHHhcCCCcEEEEEecccCCh--HHHHhhhc----
Confidence 11 11223445567665 444333 333333344444444445788999998876411 11222211
Q ss_pred cccCCceEEEEecCCCCCCHHHHHHHHHHHHhc
Q 030120 147 KIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 147 ~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
....+| .+.+|-+.+++.+...+..
T Consensus 153 ----~~v~v~----lt~~NR~~i~~~Il~~L~~ 177 (179)
T COG1618 153 ----GGVYVF----LTPENRNRILNEILSVLKG 177 (179)
T ss_pred ----CCEEEE----EccchhhHHHHHHHHHhcc
Confidence 122232 4555666888888877653
|
|
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.7e-07 Score=67.33 Aligned_cols=56 Identities=20% Similarity=0.334 Sum_probs=43.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccce--eeEEEECCEEEEEEECCC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFN--VETVQYNNIKFQVWDLGG 70 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~D~~g 70 (182)
-...++++|+|-||+||||+||+|.....+...++.+.+ ...+. -+..+.+.|.||
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~-Ldk~i~llDsPg 306 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVK-LDKKIRLLDSPG 306 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhhee-ccCCceeccCCc
Confidence 367899999999999999999999998887744444433 33332 356889999999
|
|
| >KOG1534 consensus Putative transcription factor FET5 [Transcription] | Back alignment and domain information |
|---|
Probab=98.32 E-value=6.6e-06 Score=55.45 Aligned_cols=114 Identities=12% Similarity=0.132 Sum_probs=60.8
Q ss_pred CEEEEEEECCCCCCCccch---hh---hcCC---CCeEEEEEeCCCc-ccH---HHHHHHHHHHHhccccCCCeEEEEEe
Q 030120 60 NIKFQVWDLGGQTSIRPYW---RC---YFPN---TEAVIYVVDSSDT-DRI---QTAKEEFHAILEEEELKGAVALIFAN 126 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~---~~---~~~~---~d~ii~v~d~~~~-~s~---~~~~~~~~~~~~~~~~~~~~iivv~n 126 (182)
...+.++|+|||-+..... +. .++. --+++|++|..=- ++. ..+...+.++.. -..|.|=|++
T Consensus 97 eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~----lE~P~INvls 172 (273)
T KOG1534|consen 97 EDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMIS----LEVPHINVLS 172 (273)
T ss_pred cCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHH----hcCcchhhhh
Confidence 4578899999976543221 11 1111 2356666665311 111 222222222222 3689999999
Q ss_pred CCCCCCCCCHHHHHHHhCc---------------------------ccccCCceEEEEecCCCCCCHHHHHHHHHHHH
Q 030120 127 KQDLPGALDDAAVSEALEL---------------------------HKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 127 K~D~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 177 (182)
|.|+.+....+++...+.- ......-..+++....+.++++.++..|...+
T Consensus 173 KMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~ai 250 (273)
T KOG1534|consen 173 KMDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAI 250 (273)
T ss_pred HHHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHH
Confidence 9999766443333332210 00011224577777777777888777776654
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.7e-06 Score=62.25 Aligned_cols=117 Identities=17% Similarity=0.181 Sum_probs=63.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCc-------ccccc--cc---------------cceeeEE-----------EEC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEV-------VSTIP--TI---------------GFNVETV-----------QYN 59 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~-------~~~~~--t~---------------~~~~~~~-----------~~~ 59 (182)
.+.-.++++|++|+||||++..|..... ..... +. +...... .+.
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~ 214 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR 214 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc
Confidence 3456888999999999999999964311 00000 00 1111111 114
Q ss_pred CEEEEEEECCCCCCCccchh---hhc---CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCC----CeEEEEEeCCC
Q 030120 60 NIKFQVWDLGGQTSIRPYWR---CYF---PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKG----AVALIFANKQD 129 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~---~~~---~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~----~~iivv~nK~D 129 (182)
+.++.++||+|......... ..+ ....-.++|++++... ....+.+..+......+. .+-=+|+||.|
T Consensus 215 ~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~--~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlD 292 (374)
T PRK14722 215 NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHG--DTLNEVVQAYRSAAGQPKAALPDLAGCILTKLD 292 (374)
T ss_pred CCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccCh--HHHHHHHHHHHHhhcccccccCCCCEEEEeccc
Confidence 67899999999765433221 112 2345568899998762 233333333322111011 12357789999
Q ss_pred CCCC
Q 030120 130 LPGA 133 (182)
Q Consensus 130 ~~~~ 133 (182)
-...
T Consensus 293 Et~~ 296 (374)
T PRK14722 293 EASN 296 (374)
T ss_pred cCCC
Confidence 7543
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.9e-06 Score=62.07 Aligned_cols=57 Identities=16% Similarity=0.134 Sum_probs=36.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc--ccc-------cccceeeEEEECCEEEEEEECCCCCCCc
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS--TIP-------TIGFNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~-------t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 75 (182)
..++++|++|+|||||+|.+.+..... ..+ .++.....+.... ...++||||...+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~-~~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG-GGLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC-CCEEEECCCCCccC
Confidence 578999999999999999998865432 111 1112222233321 23689999986554
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.2e-06 Score=62.03 Aligned_cols=57 Identities=21% Similarity=0.183 Sum_probs=35.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc--cccc-------ccceeeEEEECCEEEEEEECCCCCCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS--TIPT-------IGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t-------~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (182)
...++++|++|+|||||+|.+.+..... ..+. ++.....+.... ...++||||...+
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~-~~~~~DtpG~~~~ 229 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPG-GGLLIDTPGFSSF 229 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCC-CcEEEECCCcCcc
Confidence 3468999999999999999998765332 1110 112222222322 3478999996543
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.7e-06 Score=61.55 Aligned_cols=57 Identities=19% Similarity=0.091 Sum_probs=34.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc---cccc------ccceeeEEEECCEEEEEEECCCCCCCcc
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS---TIPT------IGFNVETVQYNNIKFQVWDLGGQTSIRP 76 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t------~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 76 (182)
..+++|.+|+|||||+|+|....... .+.. ++....-+... ..-.++||||...+.-
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~-~gG~iiDTPGf~~~~l 231 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLP-GGGWIIDTPGFRSLGL 231 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcC-CCCEEEeCCCCCccCc
Confidence 67889999999999999998643211 1111 11111122221 2346899999776653
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.7e-06 Score=60.02 Aligned_cols=95 Identities=17% Similarity=0.126 Sum_probs=54.5
Q ss_pred CCEEEEEEECCCCCCCccchh-------hhc-----CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEe
Q 030120 59 NNIKFQVWDLGGQTSIRPYWR-------CYF-----PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFAN 126 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~-------~~~-----~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~n 126 (182)
.+.++.++||||......... ... ..+|.+++|+|++.+. +.. .....+.+.. .+.-+|+|
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~-~~~~~f~~~~----~~~g~IlT 225 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NAL-EQAKVFNEAV----GLTGIILT 225 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHH-HHHHHHHhhC----CCCEEEEE
Confidence 457899999999765433221 111 2379999999998652 222 2334443322 24588999
Q ss_pred CCCCCCCCCH-HHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 127 KQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 127 K~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
|.|....... -.+.... +.|+..++ +|++++++.
T Consensus 226 KlDe~~~~G~~l~~~~~~--------~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 226 KLDGTAKGGIILSIAYEL--------KLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred ccCCCCCccHHHHHHHHH--------CcCEEEEe--CCCChHhCc
Confidence 9998544222 1222111 24566665 677776553
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.7e-05 Score=50.70 Aligned_cols=67 Identities=21% Similarity=0.218 Sum_probs=40.3
Q ss_pred CEEEEEEECCCCCCCccchh----hh--cCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 60 NIKFQVWDLGGQTSIRPYWR----CY--FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~----~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
+.++.++|+||......... .+ ....+.+++|+|+.... ...+....+.+.. + ..-+|+||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---~~~~~~~~~~~~~---~-~~~viltk~D~~~~ 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---DAVNQAKAFNEAL---G-ITGVILTKLDGDAR 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---HHHHHHHHHHhhC---C-CCEEEEECCcCCCC
Confidence 55789999999754322211 11 13489999999997553 2233444443322 2 35677899998543
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.1e-05 Score=54.79 Aligned_cols=67 Identities=13% Similarity=0.115 Sum_probs=38.7
Q ss_pred CEEEEEEECCCCCCCccch----hhh--cCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 60 NIKFQVWDLGGQTSIRPYW----RCY--FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~----~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
+.++.++||||........ ..+ ....+-+++|.+++.... ... .+..+.... .+-=+|+||.|....
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~--~~~-~~~~~~~~~----~~~~lIlTKlDet~~ 155 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE--DLE-QALAFYEAF----GIDGLILTKLDETAR 155 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH--HHH-HHHHHHHHS----STCEEEEESTTSSST
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH--HHH-HHHHHhhcc----cCceEEEEeecCCCC
Confidence 4689999999976543321 111 125688999999987743 222 223332221 122567999997543
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=98.14 E-value=9.5e-06 Score=60.07 Aligned_cols=110 Identities=16% Similarity=0.175 Sum_probs=64.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccc-ceeeE---------------------------------EEECC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVV-STIPTIG-FNVET---------------------------------VQYNN 60 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~-~~~~~---------------------------------~~~~~ 60 (182)
+.-.+++|||.|+||||-+-.|...... .....++ +.... ..+..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 3678899999999999998888544331 1111111 00000 01146
Q ss_pred EEEEEEECCCCCCCccch----hhhcC--CCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030120 61 IKFQVWDLGGQTSIRPYW----RCYFP--NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~----~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
.++.++||.|........ ..++. ...-+.+|++++.. .......+..+... ..--+|+||.|-..
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~-----~i~~~I~TKlDET~ 352 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLF-----PIDGLIFTKLDETT 352 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccC-----CcceeEEEcccccC
Confidence 799999999977665442 22322 23455667777765 44555555555221 12367899999753
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=9.4e-06 Score=60.31 Aligned_cols=111 Identities=20% Similarity=0.186 Sum_probs=62.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC------cc--cccc--------------cccceeeEEE--------------EC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE------VV--STIP--------------TIGFNVETVQ--------------YN 59 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~------~~--~~~~--------------t~~~~~~~~~--------------~~ 59 (182)
+...|+++|++|+||||++..|...- +. ...+ ..++...... ..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 34689999999999999999995211 10 0000 0000000000 01
Q ss_pred CEEEEEEECCCCCCCccc----hhhhc--CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 60 NIKFQVWDLGGQTSIRPY----WRCYF--PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~----~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
+.++.++||+|....... ....+ ...+.+++|+|++.. ..+....+..+.. . ..-=+|+||.|-...
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~-~----~idglI~TKLDET~k 392 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-I----HIDGIVFTKFDETAS 392 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcC-C----CCCEEEEEcccCCCC
Confidence 368999999997543222 12222 235778899998654 2333444444322 1 234688999997653
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00014 Score=48.57 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030120 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.+++++|++|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999998653
|
|
| >PRK11537 putative GTP-binding protein YjiA; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=3.4e-05 Score=56.34 Aligned_cols=66 Identities=20% Similarity=0.244 Sum_probs=37.2
Q ss_pred EEEEEEECCCCCCCccchhhhcC--------CCCeEEEEEeCCCcccHHHHHHHH-HHHHhccccCCCeEEEEEeCCCCC
Q 030120 61 IKFQVWDLGGQTSIRPYWRCYFP--------NTEAVIYVVDSSDTDRIQTAKEEF-HAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~~~iivv~nK~D~~ 131 (182)
.+..+++|.|-..-......++. ..+.++.|+|+.+..........+ .++ .. .-++++||+|+.
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi-~~------AD~IvlnK~Dl~ 163 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQV-GY------ADRILLTKTDVA 163 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHH-Hh------CCEEEEeccccC
Confidence 45678888886554433333211 248899999997642211111111 112 11 238999999997
Q ss_pred CC
Q 030120 132 GA 133 (182)
Q Consensus 132 ~~ 133 (182)
+.
T Consensus 164 ~~ 165 (318)
T PRK11537 164 GE 165 (318)
T ss_pred CH
Confidence 53
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=1e-05 Score=62.26 Aligned_cols=110 Identities=19% Similarity=0.225 Sum_probs=61.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC--------Cc--ccccc-c-------------ccceeeEE-----------EEC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG--------EV--VSTIP-T-------------IGFNVETV-----------QYN 59 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~--------~~--~~~~~-t-------------~~~~~~~~-----------~~~ 59 (182)
...-.++++|+.|+||||++..|... .+ ....+ . .++..... ...
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR 427 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence 34568899999999999999888532 11 01100 0 01111110 013
Q ss_pred CEEEEEEECCCCCCCccchh------hhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030120 60 NIKFQVWDLGGQTSIRPYWR------CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
+.++.++||+|......... .... ....++|++.... .......+..+.. ..+.-+|+||.|...
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss--~~Dl~eii~~f~~-----~~~~gvILTKlDEt~ 498 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAH--FSDLDEVVRRFAH-----AKPQGVVLTKLDETG 498 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCC--hhHHHHHHHHHHh-----hCCeEEEEecCcCcc
Confidence 57899999999654322211 1111 2356777777654 3344443333322 245679999999754
|
|
| >KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.07 E-value=7.2e-06 Score=58.37 Aligned_cols=58 Identities=21% Similarity=0.326 Sum_probs=38.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCc-----cc--ccccccceee-EEEE-CCEEEEEEECCCC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEV-----VS--TIPTIGFNVE-TVQY-NNIKFQVWDLGGQ 71 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~-----~~--~~~t~~~~~~-~~~~-~~~~~~~~D~~g~ 71 (182)
...+.++.|+|-||+|||||+|++..... .. ..|..+.... .+.+ ....+.+.||||-
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGi 206 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGI 206 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCc
Confidence 35788999999999999999999854321 11 2233322222 2444 5567899999993
|
|
| >PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1) | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.1e-05 Score=41.61 Aligned_cols=44 Identities=20% Similarity=0.366 Sum_probs=28.3
Q ss_pred CCCeEEEEEeCCCc--ccHHHHHHHHHHHHhccccCCCeEEEEEeCCC
Q 030120 84 NTEAVIYVVDSSDT--DRIQTAKEEFHAILEEEELKGAVALIFANKQD 129 (182)
Q Consensus 84 ~~d~ii~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D 129 (182)
-.++++|++|++.. .+.++....+.++... ..++|+++|+||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~--F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPL--FPNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH--TTTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHH--cCCCCEEEEEeccC
Confidence 35899999999854 5677777777776433 24899999999998
|
The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A. |
| >PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.1e-06 Score=57.53 Aligned_cols=68 Identities=19% Similarity=0.181 Sum_probs=38.4
Q ss_pred CEEEEEEECCCCCCCccch-----hhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 60 NIKFQVWDLGGQTSIRPYW-----RCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~-----~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
..+..++.+.|...-.... ....-..+.++.|+|+.+-.........+...+... -++++||+|+.+.
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A------DvIvlnK~D~~~~ 156 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFA------DVIVLNKIDLVSD 156 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-------SEEEEE-GGGHHH
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhc------CEEEEeccccCCh
Confidence 3577888888854443331 001123589999999976432233333333333332 3999999998654
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B. |
| >PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00021 Score=53.47 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHh
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~ 38 (182)
...+-+++|||..+|||||+.+|-
T Consensus 15 ~GdIYiGVVGPVRTGKSTFIKRFM 38 (492)
T PF09547_consen 15 GGDIYIGVVGPVRTGKSTFIKRFM 38 (492)
T ss_pred CCceEEEeecCcccCchhHHHHHH
Confidence 567889999999999999999994
|
It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. |
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.3e-05 Score=59.45 Aligned_cols=110 Identities=23% Similarity=0.272 Sum_probs=61.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC------Ccc--c---ccc-----------cccceeeEE---------------EE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMG------EVV--S---TIP-----------TIGFNVETV---------------QY 58 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~------~~~--~---~~~-----------t~~~~~~~~---------------~~ 58 (182)
+...++++|.+|+||||++..+... .+. . ..+ ..+...... ..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 4567899999999999998888421 100 0 000 000000000 00
Q ss_pred CCEEEEEEECCCCCCCccch------hhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030120 59 NNIKFQVWDLGGQTSIRPYW------RCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
...++.++||||........ ......+|.+++|+|+..+. ........+.... ...-+|+||.|...
T Consensus 174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l----~i~gvIlTKlD~~a 246 (437)
T PRK00771 174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV----GIGGIIITKLDGTA 246 (437)
T ss_pred hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC----CCCEEEEecccCCC
Confidence 23488999999976653322 11234678999999998763 2222333322211 12367889999753
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.9e-05 Score=58.50 Aligned_cols=111 Identities=15% Similarity=0.159 Sum_probs=61.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCc------c-c--ccccc---------------cceeeE-----------EEECC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEV------V-S--TIPTI---------------GFNVET-----------VQYNN 60 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~------~-~--~~~t~---------------~~~~~~-----------~~~~~ 60 (182)
..-.++++|+.|+||||++..|.+... . . ...+. ++.... ....+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 455899999999999999998764311 0 0 00000 000000 01145
Q ss_pred EEEEEEECCCCCCCccc----hhhh--cCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 61 IKFQVWDLGGQTSIRPY----WRCY--FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~~~----~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
.++.++||+|....... ...+ .....-.++|+|++.. .+...+.+..+ .. -..-=+|+||.|-...
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f-~~----~~~~~~I~TKlDEt~~ 341 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAY-QG----HGIHGCIITKVDEAAS 341 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHh-cC----CCCCEEEEEeeeCCCC
Confidence 68899999996543221 1222 1234567889999865 33444433333 11 1234678999997543
|
|
| >COG0523 Putative GTPases (G3E family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0002 Score=52.35 Aligned_cols=100 Identities=20% Similarity=0.117 Sum_probs=53.0
Q ss_pred EEEEEEECCCCCCCccchhhhc--------CCCCeEEEEEeCCCcccHHH-HHHHHHHHHhccccCCCeEEEEEeCCCCC
Q 030120 61 IKFQVWDLGGQTSIRPYWRCYF--------PNTEAVIYVVDSSDTDRIQT-AKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~~--------~~~d~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 131 (182)
.+..++.|.|-..-......+. -..|.++-|+|+.+-..... ....+.+-+.. .-++++||.|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~------AD~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF------ADVIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh------CcEEEEecccCC
Confidence 4566777777443322222211 23488999999986533222 22222222222 239999999998
Q ss_pred CCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 132 GALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
+... +...........+..+++.+|. .+....+++
T Consensus 159 ~~~~---l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll 193 (323)
T COG0523 159 DAEE---LEALEARLRKLNPRARIIETSY-GDVDLAELL 193 (323)
T ss_pred CHHH---HHHHHHHHHHhCCCCeEEEccc-cCCCHHHhh
Confidence 7643 3333333333455667888776 333443333
|
|
| >COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.97 E-value=7e-05 Score=62.74 Aligned_cols=111 Identities=18% Similarity=0.185 Sum_probs=63.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCccc-----ccccccceeeEEEE-CCEEEEEEECCCCCCC--------ccchhhh----
Q 030120 20 ILVLGLDNAGKTTILYRLQMGEVVS-----TIPTIGFNVETVQY-NNIKFQVWDLGGQTSI--------RPYWRCY---- 81 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~~~~~-----~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~--------~~~~~~~---- 81 (182)
-+|+|++|+||||++..- +..|+- .....+......++ -..+-.++||+|.... ...|..+
T Consensus 128 y~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lL 206 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLL 206 (1188)
T ss_pred eEEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHHH
Confidence 478999999999998754 333322 11111111122222 3456788999994322 2334432
Q ss_pred -----cCCCCeEEEEEeCCCccc----H-----HHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030120 82 -----FPNTEAVIYVVDSSDTDR----I-----QTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 82 -----~~~~d~ii~v~d~~~~~s----~-----~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
.+-.++||+.+|+.+--+ . ..++.-+.++. ....-..|+++++||.|+..
T Consensus 207 kk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~-~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 207 KKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELR-ETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHH-HhhccCCceEEEEecccccc
Confidence 244699999999964211 1 11222233332 23335789999999999975
|
|
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
Probab=97.97 E-value=9e-05 Score=44.05 Aligned_cols=97 Identities=19% Similarity=0.133 Sum_probs=55.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccc-hhhhcCCCCeEEEEEeCCCcc
Q 030120 20 ILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY-WRCYFPNTEAVIYVVDSSDTD 98 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-~~~~~~~~d~ii~v~d~~~~~ 98 (182)
+++.|.+|+|||++...+...-... +.....+ + ++.++|+++....... .......+|.++++++.....
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~-----g~~v~~~--~--d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~~ 72 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR-----GKRVLLI--D--DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEALA 72 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-----CCeEEEE--C--CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchhh
Confidence 5788999999999998885442111 1111111 1 8899999986543321 144556789999999887553
Q ss_pred cHHHHHHHHHHHHhccccCCCeEEEEEe
Q 030120 99 RIQTAKEEFHAILEEEELKGAVALIFAN 126 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~iivv~n 126 (182)
....................+..+++|
T Consensus 73 -~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 73 -VLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred -HHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 222222222222222223455555554
|
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. |
| >PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.9e-05 Score=50.35 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030120 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
++.+.|++|+|||||++.++..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHH
Confidence 6899999999999999998643
|
It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A. |
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.9e-05 Score=57.47 Aligned_cols=111 Identities=16% Similarity=0.164 Sum_probs=59.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC------c--ccccc--------------cccceeeEE-E-------------EC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE------V--VSTIP--------------TIGFNVETV-Q-------------YN 59 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~------~--~~~~~--------------t~~~~~~~~-~-------------~~ 59 (182)
..-.++++|+.|+||||++..+.... + ....+ ..++..... + ..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 45568899999999999999885311 0 00000 001100000 0 02
Q ss_pred CEEEEEEECCCCCCCccch----hhhc--CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 60 NIKFQVWDLGGQTSIRPYW----RCYF--PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~----~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
+.++.++||||........ ..+. ...+.+++|.+++.. ..+....+..+ .. -.+--+|+||.|....
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~d~~~i~~~f-~~----l~i~glI~TKLDET~~ 357 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SADVMTILPKL-AE----IPIDGFIITKMDETTR 357 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HHHHHHHHHhc-Cc----CCCCEEEEEcccCCCC
Confidence 4689999999975443322 2222 234676777776543 33333332222 11 1234788999997543
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.94 E-value=4.9e-05 Score=57.71 Aligned_cols=67 Identities=10% Similarity=0.130 Sum_probs=38.9
Q ss_pred CCEEEEEEECCCCCCCcc----chhhhcC---CCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q 030120 59 NNIKFQVWDLGGQTSIRP----YWRCYFP---NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~----~~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 131 (182)
...++.++||||...... ....++. ...-+.+|++++.. .......+..+. .. . +--+|+||.|-.
T Consensus 298 ~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~-~~---~-~~~vI~TKlDet 370 (424)
T PRK05703 298 RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFS-RL---P-LDGLIFTKLDET 370 (424)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhC-CC---C-CCEEEEeccccc
Confidence 357899999999765431 2223333 33467788888755 234443333331 11 1 236889999975
Q ss_pred C
Q 030120 132 G 132 (182)
Q Consensus 132 ~ 132 (182)
.
T Consensus 371 ~ 371 (424)
T PRK05703 371 S 371 (424)
T ss_pred c
Confidence 4
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00011 Score=52.60 Aligned_cols=90 Identities=24% Similarity=0.306 Sum_probs=57.4
Q ss_pred hcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecC
Q 030120 81 YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
-..+.|-.++++.+.+|+--......+.-+... .++..++|+||+|+.+...... .+.. ......+.+++.+|+
T Consensus 76 ~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~-~~~~--~~y~~~gy~v~~~s~ 149 (301)
T COG1162 76 PVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAV-KELL--REYEDIGYPVLFVSA 149 (301)
T ss_pred cccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHH-HHHH--HHHHhCCeeEEEecC
Confidence 345577888888888775322222222222222 4677788899999987644432 1111 122346778999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 030120 161 IKGEGLFEGMDWLSNT 176 (182)
Q Consensus 161 ~~~~~v~~l~~~i~~~ 176 (182)
+++.+++++.+.+...
T Consensus 150 ~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 150 KNGDGLEELAELLAGK 165 (301)
T ss_pred cCcccHHHHHHHhcCC
Confidence 9999999998887643
|
|
| >KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.9e-05 Score=56.97 Aligned_cols=109 Identities=18% Similarity=0.229 Sum_probs=63.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC--------------ccc-cc------ccc-c-ceeeE----------------
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGE--------------VVS-TI------PTI-G-FNVET---------------- 55 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~--------------~~~-~~------~t~-~-~~~~~---------------- 55 (182)
.+.--|+++|-.|+||||.+-.+.... |.. .. .+. . +.+..
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~ 178 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR 178 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH
Confidence 345567899999999999988884211 111 00 000 0 11111
Q ss_pred EEECCEEEEEEECCCCCCCccc-hhh-----hcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCC
Q 030120 56 VQYNNIKFQVWDLGGQTSIRPY-WRC-----YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQD 129 (182)
Q Consensus 56 ~~~~~~~~~~~D~~g~~~~~~~-~~~-----~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D 129 (182)
+.-++.++.|+||.|....... ... -.-+.|-+|+|.|++-++.-......+.+.... --+|+||.|
T Consensus 179 fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vdv-------g~vIlTKlD 251 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVDV-------GAVILTKLD 251 (483)
T ss_pred HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhcc-------ceEEEEecc
Confidence 1115789999999996654332 211 123579999999999886554444444443322 135566666
Q ss_pred C
Q 030120 130 L 130 (182)
Q Consensus 130 ~ 130 (182)
.
T Consensus 252 G 252 (483)
T KOG0780|consen 252 G 252 (483)
T ss_pred c
Confidence 5
|
|
| >COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.89 E-value=3.8e-05 Score=52.76 Aligned_cols=64 Identities=25% Similarity=0.251 Sum_probs=38.2
Q ss_pred EEEEEEECC-CCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q 030120 61 IKFQVWDLG-GQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 61 ~~~~~~D~~-g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 131 (182)
..+.++||- |.+ ..-+...+.+|.+|.|+|++-. ++.. .+.+.++....+ =.++.+|+||+|-.
T Consensus 134 ~e~VivDtEAGiE---HfgRg~~~~vD~vivVvDpS~~-sl~t-aeri~~L~~elg--~k~i~~V~NKv~e~ 198 (255)
T COG3640 134 YEVVIVDTEAGIE---HFGRGTIEGVDLVIVVVDPSYK-SLRT-AERIKELAEELG--IKRIFVVLNKVDEE 198 (255)
T ss_pred CcEEEEecccchh---hhccccccCCCEEEEEeCCcHH-HHHH-HHHHHHHHHHhC--CceEEEEEeeccch
Confidence 355555553 222 2224456789999999999854 2222 223344433322 27899999999954
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.86 E-value=4.7e-05 Score=58.35 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=19.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030120 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.--++++|+.|+||||++..|.+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 34688999999999999999864
|
|
| >TIGR02475 CobW cobalamin biosynthesis protein CobW | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00014 Score=53.71 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030120 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~ 40 (182)
.++.|.-|+|||||+++++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 568899999999999999754
|
A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683). |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00042 Score=44.26 Aligned_cols=34 Identities=21% Similarity=0.183 Sum_probs=25.6
Q ss_pred HhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 8 MFSSLFGNKEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 8 ~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
+...........+++.|++|+|||++++.+...-
T Consensus 10 i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 10 LREALELPPPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3333333455679999999999999999997654
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.82 E-value=6.4e-05 Score=56.12 Aligned_cols=110 Identities=22% Similarity=0.233 Sum_probs=65.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc------CCc--cc---ccc-----------cccceeeE-----------------
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQM------GEV--VS---TIP-----------TIGFNVET----------------- 55 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~------~~~--~~---~~~-----------t~~~~~~~----------------- 55 (182)
.....|+++|-.|+||||.+-.|.. .++ .. +.| .+++....
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 4567899999999999999877741 110 00 111 11100000
Q ss_pred EEECCEEEEEEECCCCCCCccchh------hhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCC
Q 030120 56 VQYNNIKFQVWDLGGQTSIRPYWR------CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQD 129 (182)
Q Consensus 56 ~~~~~~~~~~~D~~g~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D 129 (182)
......++.++||+|........- .-.-+.|=+++|+|+.-++.-....+.+.+.+.. -=+|+||.|
T Consensus 178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~i-------tGvIlTKlD 250 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGI-------TGVILTKLD 250 (451)
T ss_pred HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCC-------ceEEEEccc
Confidence 001356999999999776654331 2235689999999999885544444444444322 145677777
Q ss_pred CC
Q 030120 130 LP 131 (182)
Q Consensus 130 ~~ 131 (182)
-.
T Consensus 251 Gd 252 (451)
T COG0541 251 GD 252 (451)
T ss_pred CC
Confidence 54
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=8.5e-05 Score=55.59 Aligned_cols=110 Identities=17% Similarity=0.213 Sum_probs=62.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC----------Ccc--cccc--------------cccceeeEE-----------EEC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMG----------EVV--STIP--------------TIGFNVETV-----------QYN 59 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~----------~~~--~~~~--------------t~~~~~~~~-----------~~~ 59 (182)
...++++|++|+||||.+..+... .+. ...+ ..++..... ...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 457899999999999999888531 100 0000 001111100 114
Q ss_pred CEEEEEEECCCCCCCccc----hhhhcCC---CCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030120 60 NIKFQVWDLGGQTSIRPY----WRCYFPN---TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~----~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
+.++.++||+|....... ....+.. ..-.++|+|++.. .....+.+..+... .+-=+|+||.|-..
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~-----~~~~~I~TKlDet~ 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF-----SYKTVIFTKLDETT 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC-----CCCEEEEEeccCCC
Confidence 679999999996543321 1222222 2358899999877 34444444444211 23468899999754
Q ss_pred C
Q 030120 133 A 133 (182)
Q Consensus 133 ~ 133 (182)
.
T Consensus 327 ~ 327 (388)
T PRK12723 327 C 327 (388)
T ss_pred c
Confidence 3
|
|
| >KOG1533 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.8e-05 Score=53.37 Aligned_cols=71 Identities=13% Similarity=0.078 Sum_probs=38.8
Q ss_pred CEEEEEEECCCCCCCccch------hhhcCCCCeEEEEEeCCC------cccHHHHHHHHHHHHhccccCCCeEEEEEeC
Q 030120 60 NIKFQVWDLGGQTSIRPYW------RCYFPNTEAVIYVVDSSD------TDRIQTAKEEFHAILEEEELKGAVALIFANK 127 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~------~~~~~~~d~ii~v~d~~~------~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK 127 (182)
.....++|+|||-++-... -..+++.+.-++++.+.+ +..+-... +.. +........|-+=|++|
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~l--L~s-l~tMl~melphVNvlSK 172 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSL--LVS-LATMLHMELPHVNVLSK 172 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHH--HHH-HHHHHhhcccchhhhhH
Confidence 4578899999976543221 223444566666665543 32222221 111 11111235788999999
Q ss_pred CCCCCC
Q 030120 128 QDLPGA 133 (182)
Q Consensus 128 ~D~~~~ 133 (182)
+|+...
T Consensus 173 ~Dl~~~ 178 (290)
T KOG1533|consen 173 ADLLKK 178 (290)
T ss_pred hHHHHh
Confidence 998543
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=9.6e-05 Score=55.57 Aligned_cols=110 Identities=18% Similarity=0.222 Sum_probs=60.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC-------c--ccccc--------------cccceeeEE----------EECCEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE-------V--VSTIP--------------TIGFNVETV----------QYNNIKF 63 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~-------~--~~~~~--------------t~~~~~~~~----------~~~~~~~ 63 (182)
...++++|++|+||||++..|.... + ....+ ..+...... ...+.++
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 3458899999999999999886321 0 00000 001111110 0036788
Q ss_pred EEEECCCCCCCcc----chhhhcC-----CCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 64 QVWDLGGQTSIRP----YWRCYFP-----NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 64 ~~~D~~g~~~~~~----~~~~~~~-----~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
.++||||...... .+..++. ...-.++|+|++... .........+ ... .+-=+|+||.|-...
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f-~~~----~~~glIlTKLDEt~~ 374 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAY-ESL----NYRRILLTKLDEADF 374 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHh-cCC----CCCEEEEEcccCCCC
Confidence 9999999653221 1122221 234688899998773 3333333333 221 234688999997543
|
|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=8.1e-05 Score=56.46 Aligned_cols=66 Identities=20% Similarity=0.164 Sum_probs=38.6
Q ss_pred CEEEEEEECCCCCCCccchh----h--hcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030120 60 NIKFQVWDLGGQTSIRPYWR----C--YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~----~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
+.++.++||||........- . ..-..+.+++|+|+..+ +........+.... ...-+|+||.|...
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~----~i~giIlTKlD~~~ 254 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL----GLTGVILTKLDGDA 254 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC----CCCEEEEeCccCcc
Confidence 46899999999654422211 1 11256788999998754 33333334443221 12356789999643
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00016 Score=54.81 Aligned_cols=65 Identities=18% Similarity=0.156 Sum_probs=39.1
Q ss_pred CEEEEEEECCCCCCCccchhh------hcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q 030120 60 NIKFQVWDLGGQTSIRPYWRC------YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~------~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 131 (182)
+.++.++||||.......... ..-..+.+++|+|+..+ +........+.... ...-+|+||.|..
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v----~i~giIlTKlD~~ 252 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL----GLTGVVLTKLDGD 252 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC----CCCEEEEeCccCc
Confidence 467999999996544322111 12357889999999765 33333444443221 1236779999964
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=97.78 E-value=2.5e-05 Score=48.74 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030120 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999764
|
... |
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=7.3e-05 Score=60.13 Aligned_cols=113 Identities=18% Similarity=0.151 Sum_probs=60.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc---------ccccc---------------cceeeEE-----------EECCE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS---------TIPTI---------------GFNVETV-----------QYNNI 61 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~---------~~~t~---------------~~~~~~~-----------~~~~~ 61 (182)
.--++++|+.|+||||.+..+.+..... ...+. +...... ...+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~ 264 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK 264 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence 3467899999999999999886432100 00000 0000000 11356
Q ss_pred EEEEEECCCCCCCccc----hhhh--cCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 62 KFQVWDLGGQTSIRPY----WRCY--FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 62 ~~~~~D~~g~~~~~~~----~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
++.++||+|....... .... ....+-+++|+|++.. .+...+....+..... -.+-=+|+||.|-...
T Consensus 265 D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~--~~i~glIlTKLDEt~~ 338 (767)
T PRK14723 265 HLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAG--EDVDGCIITKLDEATH 338 (767)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhccc--CCCCEEEEeccCCCCC
Confidence 8999999995433221 1111 2345678899999854 2233323233321100 0123678999997543
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0001 Score=52.55 Aligned_cols=111 Identities=20% Similarity=0.182 Sum_probs=63.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC----c-cc---ccc--------------cccceeeEE--------------EEC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE----V-VS---TIP--------------TIGFNVETV--------------QYN 59 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~----~-~~---~~~--------------t~~~~~~~~--------------~~~ 59 (182)
+.-+++++|++|+||||++..+.... . .. ..+ ..++..... ...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 34699999999999999988775321 0 00 000 011111000 002
Q ss_pred CEEEEEEECCCCCCCccc----hhhhc--CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 60 NIKFQVWDLGGQTSIRPY----WRCYF--PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~----~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
+.++.++||||....... +...+ ...+-+++|+|++.. .++....+..+.. -.+-=+|+||.|....
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~-----~~~~~~I~TKlDet~~ 226 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-----IHIDGIVFTKFDETAS 226 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC-----CCCCEEEEEeecCCCC
Confidence 568999999997643222 22222 245678999998754 2344444444422 1334788999997654
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=97.73 E-value=3.5e-05 Score=51.27 Aligned_cols=45 Identities=16% Similarity=0.157 Sum_probs=28.6
Q ss_pred CeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
|++++|+|+..+.+.. ...+.+... ....+.|+++|+||+|+.+.
T Consensus 1 DvVl~VvDar~p~~~~--~~~i~~~~~-l~~~~kp~IlVlNK~DL~~~ 45 (172)
T cd04178 1 DVILEVLDARDPLGCR--CPQVEEAVL-QAGGNKKLVLVLNKIDLVPK 45 (172)
T ss_pred CEEEEEEECCCCCCCC--CHHHHHHHH-hccCCCCEEEEEehhhcCCH
Confidence 7899999998863321 122222211 11135899999999999654
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00021 Score=43.57 Aligned_cols=99 Identities=19% Similarity=0.174 Sum_probs=53.9
Q ss_pred EEEc-CCCCCHHHHHHHHhcCCcccccccccceeeEEEE---CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCC
Q 030120 21 LVLG-LDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY---NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSD 96 (182)
Q Consensus 21 ~i~G-~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~ 96 (182)
+++| ..|+||||+.-.+...-.... +....-++. ...++.++|+|+.... .....+..+|.++++.+.+.
T Consensus 3 ~~~~~kgg~gkt~~~~~la~~~~~~~----~~~~~l~d~d~~~~~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~ 76 (106)
T cd03111 3 AFIGAKGGVGATTLAANLAVALAKEA----GRRVLLVDLDLQFGDDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDL 76 (106)
T ss_pred EEECCCCCCcHHHHHHHHHHHHHhcC----CCcEEEEECCCCCCCCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCCh
Confidence 4444 478999998777642211100 000000000 1128999999986533 34456788899999998764
Q ss_pred cccHHHHHHHHHHHHhccccC-CCeEEEEEeC
Q 030120 97 TDRIQTAKEEFHAILEEEELK-GAVALIFANK 127 (182)
Q Consensus 97 ~~s~~~~~~~~~~~~~~~~~~-~~~iivv~nK 127 (182)
. +..........+. ....+ ...+.+|+|+
T Consensus 77 ~-s~~~~~~~~~~l~-~~~~~~~~~~~lVvNr 106 (106)
T cd03111 77 P-SIRNAKRLLELLR-VLDYSLPAKIELVLNR 106 (106)
T ss_pred H-HHHHHHHHHHHHH-HcCCCCcCceEEEecC
Confidence 4 3444444443332 22222 3467777775
|
The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome. |
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.70 E-value=3.7e-05 Score=50.94 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030120 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
+|+|+|++|+|||||...+...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999754
|
|
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=3.9e-05 Score=51.07 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030120 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
+|+|+|++|+|||||...+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998644
|
|
| >COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.67 E-value=3.5e-05 Score=51.48 Aligned_cols=22 Identities=45% Similarity=0.659 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030120 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
+|+|+|+||+||||+...|...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999876
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=97.67 E-value=5.6e-05 Score=41.02 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030120 19 RILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~ 38 (182)
..+|.|+.|+|||||+.++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999885
|
|
| >KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00011 Score=55.88 Aligned_cols=111 Identities=16% Similarity=0.200 Sum_probs=73.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC------------ccc---ccccccceeeE--E------------------EEC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGE------------VVS---TIPTIGFNVET--V------------------QYN 59 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~------------~~~---~~~t~~~~~~~--~------------------~~~ 59 (182)
.+..++.++.....|||||..+|..+. |.. +....++.... + +..
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~ 96 (842)
T KOG0469|consen 17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN 96 (842)
T ss_pred cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence 445578899999999999999996432 111 11111111111 1 113
Q ss_pred CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCC
Q 030120 60 NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDL 130 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~ 130 (182)
+.-+.++|.|||-.+.+..-..++-.|+.++|+|-.++--.+. ...+.+.+. .++.-++++||.|.
T Consensus 97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQT-ETVLrQA~~----ERIkPvlv~NK~DR 162 (842)
T KOG0469|consen 97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQAIA----ERIKPVLVMNKMDR 162 (842)
T ss_pred ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEech-HHHHHHHHH----hhccceEEeehhhH
Confidence 5678899999999999988889999999999999987633222 222333333 34555889999996
|
|
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00026 Score=51.25 Aligned_cols=111 Identities=18% Similarity=0.214 Sum_probs=64.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC--------------ccc-----------------ccccccceeeEEEE-----
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGE--------------VVS-----------------TIPTIGFNVETVQY----- 58 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~--------------~~~-----------------~~~t~~~~~~~~~~----- 58 (182)
.+.+-++++|-.|+||||-+-.|.... |.. .....+.+...+-+
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 457889999999999999988885211 100 00001111111111
Q ss_pred ---CCEEEEEEECCCCCCCccch-------hhhcCC-----CCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEE
Q 030120 59 ---NNIKFQVWDLGGQTSIRPYW-------RCYFPN-----TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALI 123 (182)
Q Consensus 59 ---~~~~~~~~D~~g~~~~~~~~-------~~~~~~-----~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iiv 123 (182)
.+.++.++||+|.-...... ....+. .|-+++++|++.++.--...+.+.+.... --+
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~l-------~Gi 289 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGL-------DGI 289 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcCC-------ceE
Confidence 57899999999954332221 112222 34588899999885444444455555432 257
Q ss_pred EEeCCCCCC
Q 030120 124 FANKQDLPG 132 (182)
Q Consensus 124 v~nK~D~~~ 132 (182)
|+||.|...
T Consensus 290 IlTKlDgtA 298 (340)
T COG0552 290 ILTKLDGTA 298 (340)
T ss_pred EEEecccCC
Confidence 899999643
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.63 E-value=5e-05 Score=52.70 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
-|+++|++|||||||++-+.|-.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999997644
|
|
| >PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00016 Score=47.94 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.-++|+|.+|+|||||++++...
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHH
Confidence 35789999999999999999765
|
|
| >PF13521 AAA_28: AAA domain; PDB: 1LW7_A | Back alignment and domain information |
|---|
Probab=97.60 E-value=4e-05 Score=50.56 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=17.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030120 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6999999999999999999755
|
|
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=97.57 E-value=6.8e-05 Score=48.19 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030120 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~ 40 (182)
|+++|+||+||||+++.+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999743
|
... |
| >PHA00729 NTP-binding motif containing protein | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00014 Score=50.20 Aligned_cols=37 Identities=19% Similarity=0.306 Sum_probs=27.9
Q ss_pred hHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 4 MFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 4 ~~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
+.+++........-.+++|.|+||+|||+|..++...
T Consensus 4 ~~k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 4 LAKKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred HHHHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3445555554455569999999999999999998654
|
|
| >cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars | Back alignment and domain information |
|---|
Probab=97.57 E-value=8.2e-05 Score=41.63 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030120 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~ 40 (182)
+++.|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999999765
|
Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. |
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=97.56 E-value=7.8e-05 Score=47.57 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.=.++|+|+.|+|||||++.+.+..
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEccCCCccccceeeecccc
Confidence 3468999999999999999998775
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00074 Score=48.55 Aligned_cols=113 Identities=11% Similarity=0.077 Sum_probs=63.5
Q ss_pred HHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCC------------
Q 030120 7 RMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSI------------ 74 (182)
Q Consensus 7 ~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~------------ 74 (182)
.++..-...+--+++++|++|-|||+++++|.........+.. ...++..+.+|.....
T Consensus 51 ~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~---------~~~PVv~vq~P~~p~~~~~Y~~IL~~lg 121 (302)
T PF05621_consen 51 ELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDA---------ERIPVVYVQMPPEPDERRFYSAILEALG 121 (302)
T ss_pred HHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCC---------ccccEEEEecCCCCChHHHHHHHHHHhC
Confidence 3444444455578999999999999999999876643322111 1236666666652221
Q ss_pred ------------ccchhhhcCCCCeEEEEEeCCCc---ccHHHHHHHHHHHHhccccCCCeEEEEEeCC
Q 030120 75 ------------RPYWRCYFPNTEAVIYVVDSSDT---DRIQTAKEEFHAILEEEELKGAVALIFANKQ 128 (182)
Q Consensus 75 ------------~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~ 128 (182)
.......++....=++++|=-.. .+.......+..+......-++|+|.|+++-
T Consensus 122 aP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 122 APYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 11123455667777888875321 1222223222222112222478999998764
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.53 E-value=8.3e-05 Score=51.28 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.=-++|+|++|+|||||+|-+.+-
T Consensus 31 Ge~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 31 GEFVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 336899999999999999988654
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.53 E-value=8.6e-05 Score=50.52 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
+.=.++|+|++|+|||||++.+.+-+
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 44468999999999999999997654
|
|
| >cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00053 Score=41.54 Aligned_cols=79 Identities=16% Similarity=0.124 Sum_probs=46.3
Q ss_pred EEEEc-CCCCCHHHHHHHHhcCCcccccccccceeeEEEE-CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCc
Q 030120 20 ILVLG-LDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDT 97 (182)
Q Consensus 20 v~i~G-~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (182)
+++.| ..|+||||+...+...-.....+ ...++. ...++.++|+|+..... ....+..+|.++++++.+..
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~-----vl~~d~d~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~~~ 74 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKR-----VLLIDLDPQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPSPL 74 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCc-----EEEEeCCCCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCCHH
Confidence 56667 46999999987774322111000 001111 11678999999865332 33667789999999988643
Q ss_pred ccHHHHHHH
Q 030120 98 DRIQTAKEE 106 (182)
Q Consensus 98 ~s~~~~~~~ 106 (182)
+.......
T Consensus 75 -s~~~~~~~ 82 (104)
T cd02042 75 -DLDGLEKL 82 (104)
T ss_pred -HHHHHHHH
Confidence 34444433
|
ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. |
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00011 Score=50.40 Aligned_cols=25 Identities=28% Similarity=0.235 Sum_probs=22.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
++..-++|+|++|+|||||++.+.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 5667899999999999999999975
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2 | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00016 Score=46.34 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030120 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~ 40 (182)
++|+|++|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999865
|
7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00012 Score=54.49 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCc
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEV 42 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~ 42 (182)
.-+++++|.+|+|||||+|.+.+...
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHHhcc
Confidence 34789999999999999999987543
|
|
| >cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes | Back alignment and domain information |
|---|
Probab=97.47 E-value=9.2e-05 Score=48.58 Aligned_cols=48 Identities=27% Similarity=0.439 Sum_probs=30.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQT 72 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 72 (182)
.+.++|.+|+|||||++++...- ...+.....+.+....+.+ |++|.+
T Consensus 3 vi~i~G~~gsGKTTli~~L~~~l-----~~~g~~V~~iK~~~~~~~~-d~~g~D 50 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPAL-----SARGLRVAVIKHDHHDFDI-DTPGKD 50 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----HHcCCcEEEEEecCCcccc-cCccch
Confidence 47899999999999999997531 2223334444444333333 666643
|
In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin. |
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00072 Score=43.37 Aligned_cols=97 Identities=18% Similarity=0.194 Sum_probs=57.9
Q ss_pred EEcCCCCCHHHHHHHHhcCCc------c--cccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEe
Q 030120 22 VLGLDNAGKTTILYRLQMGEV------V--STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 22 i~G~~~~GKssl~~~l~~~~~------~--~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
.-|.+|+|||++.-.+...-. . ...++.. . -..++.++|+|+.. .......+..+|.++++.+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~-~------~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~ 75 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLA-N------LDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTT 75 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCC-C------CCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcC
Confidence 456789999998766632210 0 0111100 0 01788999999753 3344567888999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCC
Q 030120 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDL 130 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~ 130 (182)
.+.. +.......+..+.... ...++.+|+|+++.
T Consensus 76 ~~~~-s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~ 109 (139)
T cd02038 76 PEPT-SITDAYALIKKLAKQL--RVLNFRVVVNRAES 109 (139)
T ss_pred CChh-HHHHHHHHHHHHHHhc--CCCCEEEEEeCCCC
Confidence 8743 2333333333332221 34578899999974
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00013 Score=46.04 Aligned_cols=21 Identities=38% Similarity=0.403 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030120 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~ 40 (182)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999765
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >TIGR00554 panK_bact pantothenate kinase, bacterial type | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0002 Score=51.54 Aligned_cols=32 Identities=22% Similarity=0.133 Sum_probs=24.4
Q ss_pred HHhhhhcCCCccEEEEEcCCCCCHHHHHHHHh
Q 030120 7 RMFSSLFGNKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 7 ~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~ 38 (182)
.++........+-|+|.|++|||||||++.+.
T Consensus 52 ~f~~~~~~~~p~IIGIaG~~GSGKSTlar~L~ 83 (290)
T TIGR00554 52 QFLGTNGAKIPYIISIAGSVAVGKSTTARILQ 83 (290)
T ss_pred HHHhcccCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 34444334567889999999999999998763
|
Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model. |
| >PRK05439 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00022 Score=51.78 Aligned_cols=35 Identities=20% Similarity=0.092 Sum_probs=27.8
Q ss_pred HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhc
Q 030120 5 FSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 5 ~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
++.++........+-|+|.|++|+||||+.+.+..
T Consensus 74 ~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 74 LEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred HHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34455545567888999999999999999998854
|
|
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00015 Score=49.79 Aligned_cols=26 Identities=27% Similarity=0.244 Sum_probs=23.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.+...|+|.|++|+|||||++.+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46788999999999999999999754
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00023 Score=48.06 Aligned_cols=33 Identities=27% Similarity=0.226 Sum_probs=25.3
Q ss_pred HhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 8 MFSSLFGNKEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 8 ~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
++.... +..-.++++|++|+|||||++.+++..
T Consensus 17 ~l~~~v-~~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 17 YLWLAV-EARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HHHHHH-hCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 344333 345689999999999999999997653
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PRK14738 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00019 Score=49.26 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=21.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.+..-++|+|++|+|||||++.|...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 45566789999999999999999754
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00017 Score=45.70 Aligned_cols=25 Identities=32% Similarity=0.337 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEV 42 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~ 42 (182)
-.++++|++|+|||+++..+...-.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 4689999999999999999976543
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00012 Score=48.67 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
..=+++.||+|+|||||++.|+...
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4457899999999999999998776
|
|
| >PF03215 Rad17: Rad17 cell cycle checkpoint protein | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0026 Score=49.67 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
=+++.||+|+||||.++.|....
T Consensus 47 iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999997543
|
|
| >KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0045 Score=47.15 Aligned_cols=144 Identities=15% Similarity=0.212 Sum_probs=81.8
Q ss_pred HhhhhcCCCccEEEEEcCCCCCHHHHHHHHh----cCCccc----ccc----------------------cccc------
Q 030120 8 MFSSLFGNKEARILVLGLDNAGKTTILYRLQ----MGEVVS----TIP----------------------TIGF------ 51 (182)
Q Consensus 8 ~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~----~~~~~~----~~~----------------------t~~~------ 51 (182)
..+....++.+-|+++|-.|+||||=+-.+. ..++.- ..+ .++.
T Consensus 369 I~sar~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYg 448 (587)
T KOG0781|consen 369 IMSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYG 448 (587)
T ss_pred HHHHHhcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcC
Confidence 3444455788999999999999999877764 111110 000 0000
Q ss_pred ------eeeEE---EECCEEEEEEECCCCCCCccch----hh--hcCCCCeEEEEEeCCCc-ccHHHHHHHHHHHHhccc
Q 030120 52 ------NVETV---QYNNIKFQVWDLGGQTSIRPYW----RC--YFPNTEAVIYVVDSSDT-DRIQTAKEEFHAILEEEE 115 (182)
Q Consensus 52 ------~~~~~---~~~~~~~~~~D~~g~~~~~~~~----~~--~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~ 115 (182)
...-+ ..++.++.++||+|...-.... .. -....|.|++|-.+--+ ++..... .+.+.+....
T Consensus 449 kd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~-~fn~al~~~~ 527 (587)
T KOG0781|consen 449 KDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLK-KFNRALADHS 527 (587)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHH-HHHHHHhcCC
Confidence 00001 1157899999999954332221 11 23568999999887544 3444443 3444444444
Q ss_pred cCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEe
Q 030120 116 LKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 116 ~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
.++.---++++|+|..++ .+-..+........ |++++
T Consensus 528 ~~r~id~~~ltk~dtv~d----~vg~~~~m~y~~~~--pi~fv 564 (587)
T KOG0781|consen 528 TPRLIDGILLTKFDTVDD----KVGAAVSMVYITGK--PILFV 564 (587)
T ss_pred CccccceEEEEeccchhh----HHHHHhhheeecCC--ceEEE
Confidence 445556789999997543 45555554443333 44443
|
|
| >PRK14737 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00017 Score=48.61 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
..=++++|++|+|||||++.|....
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 3448899999999999999998754
|
|
| >PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00014 Score=45.65 Aligned_cols=21 Identities=38% Similarity=0.438 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030120 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~ 40 (182)
|+|.|.+|+||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999765
|
... |
| >PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00016 Score=46.47 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030120 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.|+|+|+.|+|||||+..+.+.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999765
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00016 Score=48.04 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=21.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
+..=.++|+|++|+|||||+|-+.+=
T Consensus 23 ~~ge~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 23 PAGEIVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHhc
Confidence 34457899999999999999988653
|
|
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00029 Score=49.16 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=23.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
..+.+-++|.|++|+|||||++.+.+.
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 367889999999999999999998754
|
|
| >PRK06217 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00018 Score=48.36 Aligned_cols=22 Identities=32% Similarity=0.367 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030120 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
+|+|+|.+|+|||||...|...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999754
|
|
| >KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00016 Score=46.21 Aligned_cols=25 Identities=36% Similarity=0.500 Sum_probs=22.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
+...+|+|.|.||+|||||..++..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 5667999999999999999999963
|
|
| >PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00016 Score=50.51 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=23.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
-+..++++|+|++|+|||+|+..++..
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 356789999999999999999888754
|
This is thought to be an ATPase involved in viral DNA packaging []. |
| >PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00025 Score=47.56 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=17.1
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhc
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.....-.++|.|++|+|||+|++++..
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHHHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 345567789999999999999998853
|
|
| >PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00021 Score=45.71 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030120 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
.|+++|++|+|||+|++.+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 379999999999999998864
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00017 Score=49.09 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030120 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~ 40 (182)
|+|.|++|+|||||++.+.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999654
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00019 Score=49.50 Aligned_cols=21 Identities=33% Similarity=0.532 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030120 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
-|+|+|++|+|||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999976
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00021 Score=48.19 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.++++|++|+|||||++.+.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58899999999999999996653
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00021 Score=43.45 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 030120 17 EARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~ 38 (182)
.-.++++|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3457999999999999999985
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00019 Score=48.10 Aligned_cols=22 Identities=36% Similarity=0.421 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030120 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.++|+|++|+|||||++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998664
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >PRK14530 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00021 Score=49.37 Aligned_cols=22 Identities=45% Similarity=0.511 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030120 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.+|+|+|+||+||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999964
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0002 Score=50.37 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030120 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.--++|+|+.|+|||||++.+.+
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 44578999999999999999975
|
|
| >PRK08233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00024 Score=47.55 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
..-|+|.|.+|+|||||.+.|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 356889999999999999999754
|
|
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00028 Score=52.13 Aligned_cols=67 Identities=16% Similarity=0.081 Sum_probs=44.4
Q ss_pred ccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHH-hccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCc
Q 030120 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAIL-EEEELKGAVALIFANKQDLPGALDDAAVSEALEL 145 (182)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~-~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~ 145 (182)
.......+..+|+||.|.|+.+|.+- -...+.+.. ... .++..|+|+||+|+.+.+..++...++..
T Consensus 137 ~ke~rkvve~sDVVleVlDARDPlgt--R~~~vE~~V~~~~--gnKkLILVLNK~DLVPrEv~e~Wl~YLr~ 204 (435)
T KOG2484|consen 137 DKEFRKVVEASDVVLEVLDARDPLGT--RCPEVEEAVLQAH--GNKKLILVLNKIDLVPREVVEKWLVYLRR 204 (435)
T ss_pred HHHHHHHHhhhheEEEeeeccCCCCC--CChhHHHHHHhcc--CCceEEEEeehhccCCHHHHHHHHHHHHh
Confidence 33445566789999999999998542 222222332 222 24789999999999877666666666653
|
|
| >PRK13851 type IV secretion system protein VirB11; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0003 Score=51.94 Aligned_cols=27 Identities=26% Similarity=0.245 Sum_probs=23.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
....+++|.|++|+|||||++++++.-
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHccc
Confidence 567889999999999999999998653
|
|
| >COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00023 Score=46.70 Aligned_cols=20 Identities=35% Similarity=0.419 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030120 19 RILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~ 38 (182)
+|+|.|.||+||||+++.|.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 68999999999999999996
|
|
| >PRK03839 putative kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00026 Score=47.47 Aligned_cols=22 Identities=32% Similarity=0.297 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030120 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
+|+++|.||+||||+.+.+...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999654
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00026 Score=48.74 Aligned_cols=24 Identities=33% Similarity=0.313 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
. .++++|+.|+|||||++.+.+-.
T Consensus 26 g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 26 G-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred C-cEEEECCCCCCHHHHHHHHhCCC
Confidence 5 89999999999999999998753
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00025 Score=47.44 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=22.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
+..-.++++|+.|+|||||++.+.+-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 345578999999999999999998764
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00021 Score=49.53 Aligned_cols=21 Identities=33% Similarity=0.203 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030120 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~ 40 (182)
|+|.|++|||||||++.+.+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHH
Confidence 689999999999999998653
|
The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00028 Score=48.82 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
..-.++++|+.|+|||||++.+.+-.
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 34468999999999999999998764
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00032 Score=45.95 Aligned_cols=50 Identities=28% Similarity=0.391 Sum_probs=31.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCc
Q 030120 20 ILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 75 (182)
+.|+|..|+|||||+.++...- ...+.....+...... --+|++|.+.++
T Consensus 5 l~ivG~k~SGKTTLie~lv~~L-----~~~G~rVa~iKH~hh~-~~~D~~GkDs~r 54 (161)
T COG1763 5 LGIVGYKNSGKTTLIEKLVRKL-----KARGYRVATVKHAHHD-FDLDKPGKDTYR 54 (161)
T ss_pred EEEEecCCCChhhHHHHHHHHH-----HhCCcEEEEEEecCCC-CCCCCCCCccch
Confidence 6799999999999999996432 1222333444443222 236777766554
|
|
| >PRK13949 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00029 Score=46.82 Aligned_cols=22 Identities=41% Similarity=0.493 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030120 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
+|+++|++|+||||+.+.+...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988643
|
|
| >TIGR03263 guanyl_kin guanylate kinase | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00028 Score=47.26 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
-++++|++|+|||||++.|....
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 47899999999999999998753
|
Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0003 Score=48.61 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
..=.++++|+.|+|||||++.+.+-.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468999999999999999998754
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00027 Score=51.77 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
-++++||+|||||||++.+.|=.
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37889999999999999997643
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00031 Score=48.32 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
..-.++++|+.|+|||||++.+.+-.
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44468999999999999999998764
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00031 Score=48.10 Aligned_cols=26 Identities=31% Similarity=0.185 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
..=.++++|+.|+|||||++.+.+-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44478999999999999999998754
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00029 Score=47.68 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
..=.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33468999999999999999998754
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00031 Score=49.18 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
..=.++++|+.|+|||||++.+.+-.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468999999999999999998754
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 182 | ||||
| 1mr3_F | 181 | Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 | 2e-60 | ||
| 1moz_A | 183 | Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo | 3e-60 | ||
| 3aq4_A | 184 | Molecular Insights Into Plant Cell Proliferation Di | 6e-60 | ||
| 2k5u_A | 181 | Solution Structure Of Myirstoylated Yeast Arf1 Prot | 1e-59 | ||
| 1rrg_A | 181 | Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com | 3e-59 | ||
| 1hur_A | 180 | Human Adp-Ribosylation Factor 1 Complexed With Gdp, | 2e-58 | ||
| 2ksq_A | 181 | The Myristoylated Yeast Arf1 In A Gtp And Bicelle B | 6e-58 | ||
| 1r4a_A | 165 | Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac | 6e-58 | ||
| 4dcn_A | 166 | Crystal Structure Analysis Of The Arfaptin2 Bar Dom | 1e-57 | ||
| 3lrp_A | 181 | Crystal Structure Of Plasmodium Falciparum Adp-Ribo | 1e-56 | ||
| 3o47_A | 329 | Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le | 6e-56 | ||
| 1z6x_A | 180 | Structure Of Human Adp-Ribosylation Factor 4 Length | 6e-56 | ||
| 3rd1_A | 178 | Structure Of An Adp Ribosylation Factor From Entamo | 5e-54 | ||
| 1upt_A | 171 | Structure Of A Complex Of The Golgin-245 Grip Domai | 5e-54 | ||
| 1re0_A | 164 | Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe | 2e-53 | ||
| 3tjz_A | 164 | Crystal Structure Of Arf1 Bound To The GammaZETA-Co | 3e-53 | ||
| 2b6h_A | 192 | Structure Of Human Adp-Ribosylation Factor 5 Length | 1e-52 | ||
| 1j2j_A | 166 | Crystal Structure Of Gga1 Gat N-terminal Region In | 1e-52 | ||
| 1e0s_A | 174 | Small G Protein Arf6-Gdp Length = 174 | 3e-52 | ||
| 2a5d_A | 175 | Structural Basis For The Activation Of Cholera Toxi | 3e-52 | ||
| 2a5g_A | 175 | Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length | 2e-51 | ||
| 3lvr_E | 497 | The Crystal Structure Of Asap3 In Complex With Arf6 | 5e-50 | ||
| 2x77_A | 189 | Crystal Structure Of Leishmania Major Adp Ribosylat | 9e-49 | ||
| 3n5c_A | 162 | Crystal Structure Of Arf6delta13 Complexed With Gdp | 6e-48 | ||
| 2w83_A | 165 | Crystal Structure Of The Arf6 Gtpase In Complex Wit | 1e-47 | ||
| 3vhx_A | 172 | The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi | 1e-47 | ||
| 4fme_C | 160 | Espg-Rab1-Arf6 Complex Length = 160 | 5e-47 | ||
| 3pcr_B | 162 | Structure Of Espg-Arf6 Complex Length = 162 | 6e-47 | ||
| 1zj6_A | 187 | Crystal Structure Of Human Arl5 Length = 187 | 3e-45 | ||
| 1z6y_A | 179 | Structure Of Human Adp-Ribosylation Factor-Like 5 L | 3e-45 | ||
| 1yzg_A | 179 | Structure Of Human Adp-ribosylation Factor-like 8 L | 1e-43 | ||
| 1ksh_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati | 5e-42 | ||
| 1ksg_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt | 9e-42 | ||
| 3doe_A | 192 | Complex Of Arl2 And Bart, Crystal Form 1 Length = 1 | 1e-41 | ||
| 2h16_A | 183 | Structure Of Human Adp-Ribosylation Factor-Like 5 ( | 1e-41 | ||
| 2h17_A | 181 | Structure Of Human Adp-Ribosylation Factor-Like 5 ( | 2e-41 | ||
| 4gok_B | 169 | The Crystal Structure Of Arl2gppnhp In Complex With | 6e-40 | ||
| 1ksj_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme | 1e-37 | ||
| 3bh7_A | 164 | Crystal Structure Of The Rp2-Arl3 Complex Bound To | 2e-37 | ||
| 4goj_A | 189 | The Crystal Structure Of Full Length Arl3gppnhp In | 2e-37 | ||
| 1fzq_A | 181 | Crystal Structure Of Murine Arl3-Gdp Length = 181 | 2e-37 | ||
| 3bh6_A | 164 | Crystal Structure Of The Rp2-Arl3 Complex Bound To | 2e-36 | ||
| 2h57_A | 190 | Crystal Structure Of Human Adp-Ribosylation Factor- | 6e-30 | ||
| 2h18_A | 193 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 7e-24 | ||
| 1zd9_A | 188 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 1e-22 | ||
| 4bas_A | 199 | Structure Of The Arl6 Bbs3 Small Gtpase From Trypan | 3e-22 | ||
| 1m2o_B | 190 | Crystal Structure Of The Sec23-Sar1 Complex Length | 6e-22 | ||
| 2al7_A | 186 | Structure Of Human Adp-Ribosylation Factor-Like 10c | 9e-22 | ||
| 2qtv_B | 167 | Structure Of Sec23-Sar1 Complexed With The Active F | 7e-21 | ||
| 2fmx_A | 195 | An Open Conformation Of Switch I Revealed By Sar1-g | 5e-18 | ||
| 1f6b_A | 198 | Crystal Structure Of Sar1-Gdp Complex Length = 198 | 6e-18 | ||
| 2fa9_A | 189 | The Crystal Structure Of Sar1[h79g]-gdp Provides In | 1e-17 | ||
| 2gao_A | 208 | Crystal Structure Of Human Sar1a In Complex With Gd | 3e-17 | ||
| 1yvd_A | 169 | Gppnhp-Bound Rab22 Gtpase Length = 169 | 4e-06 | ||
| 3tw8_B | 181 | Gef Domain Of Dennd 1b In Complex With Rab Gtpase R | 1e-05 | ||
| 2rhd_A | 175 | Crystal Structure Of Cryptosporidium Parvum Small G | 2e-05 | ||
| 1z0j_A | 170 | Structure Of Gtp-Bound Rab22q64l Gtpase In Complex | 2e-05 | ||
| 2g77_B | 198 | Crystal Structure Of Gyp1 Tbc Domain In Complex Wit | 2e-05 | ||
| 3qbt_A | 174 | Crystal Structure Of Ocrl1 540-678 In Complex With | 2e-05 | ||
| 2fu5_C | 183 | Structure Of Rab8 In Complex With Mss4 Length = 183 | 3e-05 | ||
| 1z06_A | 189 | Gppnhp-Bound Rab33 Gtpase Length = 189 | 3e-05 | ||
| 3tkl_A | 196 | Crystal Structure Of The Gtp-Bound Rab1a In Complex | 5e-05 | ||
| 4fid_A | 340 | Crystal Structure Of A Heterotrimeric G-Protein Sub | 6e-05 | ||
| 1ukv_Y | 206 | Structure Of Rabgdp-Dissociation Inhibitor In Compl | 6e-05 | ||
| 2fol_A | 191 | Crystal Structure Of Human Rab1a In Complex With Gd | 6e-05 | ||
| 4fmd_F | 164 | Espg-Rab1 Complex Structure At 3.05 A Length = 164 | 6e-05 | ||
| 4fmb_B | 171 | Vira-Rab1 Complex Structure Length = 171 | 7e-05 | ||
| 2bcg_Y | 206 | Structure Of Doubly Prenylated Ypt1:gdi Complex Len | 7e-05 | ||
| 1yzn_A | 185 | Gppnhp-Bound Ypt1p Gtpase Length = 185 | 7e-05 | ||
| 2eqb_A | 174 | Crystal Structure Of The Rab Gtpase Sec4p, The Sec2 | 7e-05 | ||
| 4fmc_B | 171 | Espg-Rab1 Complex Length = 171 | 7e-05 | ||
| 3l0i_B | 199 | Complex Structure Of Sidm/drra With The Wild Type R | 8e-05 | ||
| 1g17_A | 170 | Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma) | 8e-05 | ||
| 1g16_A | 170 | Crystal Structure Of Sec4-Gdp Length = 170 | 8e-05 | ||
| 3cph_A | 213 | Crystal Structure Of Sec4 In Complex With Rab-Gdi L | 8e-05 | ||
| 2wwx_A | 175 | Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra | 8e-05 | ||
| 3jza_A | 175 | Crystal Structure Of Human Rab1b In Complex With Th | 9e-05 | ||
| 4i1o_A | 181 | Crystal Structure Of The Legionella Pneumophila Gap | 9e-05 | ||
| 3sfv_A | 181 | Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan | 1e-04 | ||
| 2ocy_C | 170 | Complex Of The Guanine Exchange Factor Sec2p And Th | 1e-04 | ||
| 1z07_A | 166 | Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166 | 1e-04 | ||
| 4fmc_F | 117 | Espg-Rab1 Complex Length = 117 | 2e-04 | ||
| 1huq_A | 164 | 1.8a Crystal Structure Of The Monomeric Gtpase Rab5 | 2e-04 | ||
| 2efc_B | 181 | Ara7-GdpATVPS9A Length = 181 | 5e-04 | ||
| 3rab_A | 169 | Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169 | 5e-04 | ||
| 2fg5_A | 192 | Crystal Structure Of Human Rab31 In Complex With A | 5e-04 | ||
| 2g6b_A | 180 | Crystal Structure Of Human Rab26 In Complex With A | 6e-04 | ||
| 1n6o_A | 170 | Crystal Structure Of Human Rab5a A30k Mutant Comple | 8e-04 | ||
| 1n6p_A | 170 | Crystal Structure Of Human Rab5a A30e Mutant Comple | 8e-04 | ||
| 1n6n_A | 170 | Crystal Structure Of Human Rab5a A30r Mutant Comple | 8e-04 | ||
| 1shz_A | 340 | Crystal Structure Of The P115rhogef Rgrgs Domain In | 8e-04 | ||
| 2fh5_B | 214 | The Structure Of The Mammalian Srp Receptor Length | 9e-04 |
| >pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181 | Back alignment and structure |
|
| >pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183 | Back alignment and structure |
|
| >pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184 | Back alignment and structure |
|
| >pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181 | Back alignment and structure |
|
| >pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181 | Back alignment and structure |
|
| >pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180 | Back alignment and structure |
|
| >pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181 | Back alignment and structure |
|
| >pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165 | Back alignment and structure |
|
| >pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166 | Back alignment and structure |
|
| >pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181 | Back alignment and structure |
|
| >pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 | Back alignment and structure |
|
| >pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180 | Back alignment and structure |
|
| >pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178 | Back alignment and structure |
|
| >pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171 | Back alignment and structure |
|
| >pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164 | Back alignment and structure |
|
| >pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164 | Back alignment and structure |
|
| >pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192 | Back alignment and structure |
|
| >pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166 | Back alignment and structure |
|
| >pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174 | Back alignment and structure |
|
| >pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175 | Back alignment and structure |
|
| >pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175 | Back alignment and structure |
|
| >pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497 | Back alignment and structure |
|
| >pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation Factor-Like 1. Length = 189 | Back alignment and structure |
|
| >pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162 | Back alignment and structure |
|
| >pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165 | Back alignment and structure |
|
| >pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172 | Back alignment and structure |
|
| >pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160 | Back alignment and structure |
|
| >pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162 | Back alignment and structure |
|
| >pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187 | Back alignment and structure |
|
| >pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179 | Back alignment and structure |
|
| >pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179 | Back alignment and structure |
|
| >pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186 | Back alignment and structure |
|
| >pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186 | Back alignment and structure |
|
| >pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192 | Back alignment and structure |
|
| >pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183 | Back alignment and structure |
|
| >pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181 | Back alignment and structure |
|
| >pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169 | Back alignment and structure |
|
| >pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186 | Back alignment and structure |
|
| >pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164 | Back alignment and structure |
|
| >pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189 | Back alignment and structure |
|
| >pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181 | Back alignment and structure |
|
| >pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164 | Back alignment and structure |
|
| >pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190 | Back alignment and structure |
|
| >pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193 | Back alignment and structure |
|
| >pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188 | Back alignment and structure |
|
| >pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma Brucei With Bound Nucleotide Analogue Gppnp Length = 199 | Back alignment and structure |
|
| >pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex Length = 190 | Back alignment and structure |
|
| >pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186 | Back alignment and structure |
|
| >pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 167 | Back alignment and structure |
|
| >pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp Crystal Structure At Low Mg(2+) Length = 195 | Back alignment and structure |
|
| >pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex Length = 198 | Back alignment and structure |
|
| >pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight Into The Coat-controlled Gtp Hydrolysis In The Disassembly Of Cop Ii Length = 189 | Back alignment and structure |
|
| >pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp Length = 208 | Back alignment and structure |
|
| >pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169 | Back alignment and structure |
|
| >pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181 | Back alignment and structure |
|
| >pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175 | Back alignment and structure |
|
| >pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170 | Back alignment and structure |
|
| >pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198 | Back alignment and structure |
|
| >pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174 | Back alignment and structure |
|
| >pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183 | Back alignment and structure |
|
| >pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189 | Back alignment and structure |
|
| >pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196 | Back alignment and structure |
|
| >pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit From Entamoeba Histolytica, Ehg-Alpha-1 Length = 340 | Back alignment and structure |
|
| >pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206 | Back alignment and structure |
|
| >pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191 | Back alignment and structure |
|
| >pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164 | Back alignment and structure |
|
| >pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171 | Back alignment and structure |
|
| >pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206 | Back alignment and structure |
|
| >pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185 | Back alignment and structure |
|
| >pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174 | Back alignment and structure |
|
| >pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171 | Back alignment and structure |
|
| >pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199 | Back alignment and structure |
|
| >pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170 | Back alignment and structure |
|
| >pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170 | Back alignment and structure |
|
| >pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213 | Back alignment and structure |
|
| >pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175 | Back alignment and structure |
|
| >pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175 | Back alignment and structure |
|
| >pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181 | Back alignment and structure |
|
| >pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181 | Back alignment and structure |
|
| >pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170 | Back alignment and structure |
|
| >pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166 | Back alignment and structure |
|
| >pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117 | Back alignment and structure |
|
| >pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164 | Back alignment and structure |
|
| >pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181 | Back alignment and structure |
|
| >pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169 | Back alignment and structure |
|
| >pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192 | Back alignment and structure |
|
| >pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180 | Back alignment and structure |
|
| >pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170 | Back alignment and structure |
|
| >pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A Complex With Galpha(13):galpha(i1) Chimera Length = 340 | Back alignment and structure |
|
| >pdb|2FH5|B Chain B, The Structure Of The Mammalian Srp Receptor Length = 214 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189 | Back alignment and structure |
|---|
Score = 318 bits (818), Expect = e-113
Identities = 101/184 (54%), Positives = 137/184 (74%), Gaps = 3/184 (1%)
Query: 1 MGIMFSRM---FSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQ 57
MG + + L +++ R+L+LGLDNAGKT+ILYRL +G+VV+T+PT+G N+ET+Q
Sbjct: 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQ 62
Query: 58 YNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELK 117
Y NI F+VWDLGGQT +RPYWRCYF +T+AVIYVVDS+D DR+ AK E +A+L+E+EL+
Sbjct: 63 YKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELR 122
Query: 118 GAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177
++ LIFANKQDLP A +A ++E L + I NR W I K+ + G+GL EGMDWL L
Sbjct: 123 KSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERL 182
Query: 178 KSGG 181
+ G
Sbjct: 183 REQG 186
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187 | Back alignment and structure |
|---|
Score = 318 bits (816), Expect = e-113
Identities = 89/179 (49%), Positives = 126/179 (70%), Gaps = 1/179 (0%)
Query: 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MGI+F+R++ LF ++E +++++GLDNAGKTTILY+ M EVV T PTIG NVE + NN
Sbjct: 1 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN 59
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV 120
+F +WD+GGQ S+R W Y+ NTE VI VVDS+D +RI +EE + +L E+L+ A
Sbjct: 60 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG 119
Query: 121 ALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
LIFANKQD+ + A +S+ L+L IK+ QW I CA+ GEGL +G++W+ + LK
Sbjct: 120 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKI 178
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186 | Back alignment and structure |
|---|
Score = 313 bits (805), Expect = e-111
Identities = 84/179 (46%), Positives = 118/179 (65%), Gaps = 1/179 (0%)
Query: 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
MG + + + +E R+L+LGLDNAGKTTIL + +V + PT+GFN++T+++
Sbjct: 3 MG-LLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRG 61
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV 120
K +WD+GGQ S+R YWR YF +T+ +I+VVDS+D R+Q + E ++L EE L GA
Sbjct: 62 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT 121
Query: 121 ALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
LIFANKQDLPGAL A+ EALEL I++ W I A+ GE L G+DWL + + S
Sbjct: 122 LLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 180
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171 | Back alignment and structure |
|---|
Score = 313 bits (804), Expect = e-111
Identities = 109/168 (64%), Positives = 132/168 (78%)
Query: 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQ 71
+E RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVETV Y N+KFQVWDLGG
Sbjct: 2 SHMTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGL 61
Query: 72 TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131
TSIRPYWRCY+ NT+AVIYVVDS D DRI +K E A+LEEEEL+ A+ ++FANKQD+
Sbjct: 62 TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 121
Query: 132 GALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
A+ + ++ +L L +K+R+W IFKT A KG GL E M+WL TLKS
Sbjct: 122 QAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 169
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183 | Back alignment and structure |
|---|
Score = 313 bits (804), Expect = e-111
Identities = 115/180 (63%), Positives = 143/180 (79%), Gaps = 1/180 (0%)
Query: 1 MGIMFSRMFSSLFG-NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYN 59
MG +FS MF L+G NKE RIL+LGLD AGKTTILYRLQ+GEVV+T PTIGFNVET+ Y
Sbjct: 1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYK 60
Query: 60 NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGA 119
N+K VWDLGGQTSIRPYWRCY+ +T AVI+VVDS+D DR+ TA +E H +L+EEEL+ A
Sbjct: 61 NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDA 120
Query: 120 VALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
L+FANKQD PGAL + VS+ L L ++K+R W+I + AIKGEG+ EG+DWL + +K
Sbjct: 121 ALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE 180
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188 | Back alignment and structure |
|---|
Score = 313 bits (805), Expect = e-111
Identities = 54/175 (30%), Positives = 96/175 (54%), Gaps = 1/175 (0%)
Query: 6 SRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEV-VSTIPTIGFNVETVQYNNIKFQ 64
S +E + ++GL +GKTT + + G+ IPT+GFN+ + N+ +
Sbjct: 11 SSGLVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIK 70
Query: 65 VWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIF 124
+WD+GGQ R W Y A++Y+VD++D ++I+ +K E H +L++ +L+G L+
Sbjct: 71 LWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVL 130
Query: 125 ANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
NK+DLPGALD+ + E + L I++R+ + + + + + WL KS
Sbjct: 131 GNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS 185
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192 | Back alignment and structure |
|---|
Score = 309 bits (795), Expect = e-109
Identities = 96/179 (53%), Positives = 136/179 (75%), Gaps = 4/179 (2%)
Query: 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
G +FSR +FG K+ RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y N
Sbjct: 17 RGSLFSR----IFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 72
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV 120
I F VWD+GGQ IRP WR YF NT+ +I+VVDS+D +R+Q + +E +L+E+EL+ AV
Sbjct: 73 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV 132
Query: 121 ALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
L+FANKQD+P A+ + +++ L L +++R W + TCA +G GL++G+DWLS+ L
Sbjct: 133 LLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSK 191
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181 | Back alignment and structure |
|---|
Score = 307 bits (789), Expect = e-109
Identities = 80/178 (44%), Positives = 113/178 (63%), Gaps = 3/178 (1%)
Query: 4 MFSRMFSSLFG--NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNI 61
+ S + L ++E RIL+LGLDNAGKTT+L +L ++ PT GFN+++VQ
Sbjct: 2 LLS-ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGF 60
Query: 62 KFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVA 121
K VWD+GGQ IRPYWR YF NT+ +IYV+DS+D R + +E +LEEE+L
Sbjct: 61 KLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPV 120
Query: 122 LIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
LIFANKQDL A + ++E L LH I++R W I A+ GEG+ +GM+W+ + +
Sbjct: 121 LIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNA 178
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190 | Back alignment and structure |
|---|
Score = 307 bits (789), Expect = e-108
Identities = 61/181 (33%), Positives = 89/181 (49%), Gaps = 8/181 (4%)
Query: 5 FSRMFSSL-FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKF 63
F + +SL NK ++L LGLDNAGKTT+L+ L+ + + PT E + NIKF
Sbjct: 10 FRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKF 69
Query: 64 QVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALI 123
+DLGG R W+ YFP ++++VD++D +R A+ E A+ ELK +I
Sbjct: 70 TTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVI 129
Query: 124 FANKQDLPGALDDAAVSEALELHKIKN-------RQWAIFKTCAIKGEGLFEGMDWLSNT 176
NK D P A+ +A + AL L R +F + G E WLS
Sbjct: 130 LGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189
Query: 177 L 177
+
Sbjct: 190 I 190
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181 | Back alignment and structure |
|---|
Score = 305 bits (784), Expect = e-108
Identities = 86/181 (47%), Positives = 119/181 (65%), Gaps = 4/181 (2%)
Query: 1 MG--IMFSRMFSSLF--GNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETV 56
MG S L G++E +++++GLDNAGKTTILY+ M EVV T PTIG NVE +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEI 60
Query: 57 QYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEEL 116
NN +F +WD+GGQ S+R W Y+ NTE VI VVDS+D +RI +EE + +L E+L
Sbjct: 61 VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDL 120
Query: 117 KGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNT 176
+ A LIFANKQD+ + A +S+ L+L IK+ QW I CA+ GEGL +G++W+ +
Sbjct: 121 RKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180
Query: 177 L 177
L
Sbjct: 181 L 181
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164 | Back alignment and structure |
|---|
Score = 299 bits (767), Expect = e-106
Identities = 96/161 (59%), Positives = 129/161 (80%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW 78
RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ IRP W
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 61
Query: 79 RCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAA 138
R YF NT+ +I+VVDS+D +R+ A+EE +L E+EL+ AV L+FANKQDLP A++ A
Sbjct: 62 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE 121
Query: 139 VSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
+++ L LH +++R W I TCA G+GL+EG+DWLSN L++
Sbjct: 122 ITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 162
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190 | Back alignment and structure |
|---|
Score = 299 bits (769), Expect = e-105
Identities = 75/187 (40%), Positives = 110/187 (58%), Gaps = 8/187 (4%)
Query: 1 MGIMFSRMF--SSLF--GNKEARILVLGLDNAGKTTILYRLQMGEV--VSTIPTIGFNVE 54
MG S L G+KE +L LGLDN+GKTTI+ +L+ + +PTIGF++E
Sbjct: 1 MGSSHHHHHHSSGLVPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIE 60
Query: 55 TVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEE 114
+ +++ F V+D+ GQ R W Y+ +A+I+V+DSSD R+ AKEE +L
Sbjct: 61 KFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHP 120
Query: 115 ELKGAVA--LIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172
++K L FANK DL A+ VS+ L L IK++ W I + AIKGEGL EG+DW
Sbjct: 121 DIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDW 180
Query: 173 LSNTLKS 179
L + +++
Sbjct: 181 LQDQIQT 187
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198 | Back alignment and structure |
|---|
Score = 299 bits (768), Expect = e-105
Identities = 52/197 (26%), Positives = 92/197 (46%), Gaps = 20/197 (10%)
Query: 1 MGIMFSRMFSSL--------FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFN 52
M +F ++S K +++ LGLDNAGKTT+L+ L+ + +PT+
Sbjct: 1 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 60
Query: 53 VETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILE 112
E + + F +DLGG R W+ Y P ++++VD +D +R+ +KEE +++
Sbjct: 61 SEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 120
Query: 113 EEELKGAVALIFANKQDLPGALDDAAVSEAL------------ELHKIKNRQWAIFKTCA 160
+E + LI NK D P A+ + + E L ++ R +F
Sbjct: 121 DETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 180
Query: 161 IKGEGLFEGMDWLSNTL 177
+K +G EG W++ +
Sbjct: 181 LKRQGYGEGFRWMAQYI 197
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 | Back alignment and structure |
|---|
Score = 286 bits (733), Expect = 3e-98
Identities = 101/179 (56%), Positives = 134/179 (74%)
Query: 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
LFG KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y N
Sbjct: 149 AQNWTPPQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 208
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV 120
I F VWD+GGQ IRP WR YF NT+ +I+VVDS+D +R+ A+EE +L E+EL+ AV
Sbjct: 209 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 268
Query: 121 ALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
L+FANKQDLP A++ A +++ L LH +++R W I TCA G+GL+EG+DWLSN L++
Sbjct: 269 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 327
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214 | Back alignment and structure |
|---|
Score = 221 bits (566), Expect = 1e-74
Identities = 39/172 (22%), Positives = 66/172 (38%), Gaps = 9/172 (5%)
Query: 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN---IKFQVWDLGGQ 71
+ + +L +GL ++GKT + RL G+ T +I + + NN + DL G
Sbjct: 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGH 64
Query: 72 TSIRP-YWRCYFPNTEAVIYVVDSSDTDR-IQTAKEEFHAILEEEEL--KGAVALIFANK 127
S+R + + AV++VVDS+ R ++ E + +L + LI NK
Sbjct: 65 ESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNK 124
Query: 128 QDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
QD+ A + + LE R + L K
Sbjct: 125 QDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSS--TAPAQLGKKGKE 174
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198 | Back alignment and structure |
|---|
Score = 201 bits (513), Expect = 1e-66
Identities = 39/185 (21%), Positives = 78/185 (42%), Gaps = 26/185 (14%)
Query: 16 KEARILVLGLDNAGKTTILYRL-------QMGEVVS----TIPTIGFN-----VETVQYN 59
+I+ G +GKTT L + + GE+VS T+ F+ + V+
Sbjct: 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGF 72
Query: 60 NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEE-----E 114
+F ++ + GQ + + +++V DS+ +R++ E + E
Sbjct: 73 KTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAP-NRLRANAESMRNMRENLAEYGL 131
Query: 115 ELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174
L +I NK+DLP AL V ++ ++ + + A +G+G+FE + +S
Sbjct: 132 TLDDVPIVIQVNKRDLPDALPVEMVRAVVDPE----GKFPVLEAVATEGKGVFETLKEVS 187
Query: 175 NTLKS 179
+ +
Sbjct: 188 RLVLA 192
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193 | Back alignment and structure |
|---|
Score = 198 bits (506), Expect = 1e-65
Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 11/153 (7%)
Query: 10 SSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLG 69
S G+ + I++ G N+GKT++L L V T+ + + Y+ + D
Sbjct: 41 SGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSAADYDGSGVTLVDFP 99
Query: 70 GQTSIRPYWRCYFPN----TEAVIYVVDSS-DTDRIQTAKEEFHAILEEEELKGAVA--- 121
G +R Y + +I++VDS+ D ++ T E IL E
Sbjct: 100 GHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDI 159
Query: 122 LIFANKQDLPGALDDAAVSEAL--ELHKIKNRQ 152
LI NK +L A + + +AL E+ K+ R+
Sbjct: 160 LIACNKSELFTARPPSKIKDALESEIQKVIERR 192
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218 | Back alignment and structure |
|---|
Score = 199 bits (508), Expect = 1e-65
Identities = 39/178 (21%), Positives = 68/178 (38%), Gaps = 14/178 (7%)
Query: 10 SSLFG---NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVW 66
S + + + I++ G N+GKT++L L V T+ + + Y+ +
Sbjct: 2 SHMGIKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSAADYDGSGVTLV 60
Query: 67 DLGGQTSIRPYWRCYFPN----TEAVIYVVDSS-DTDRIQTAKEEFHAILEEEELKGAVA 121
D G +R Y + +I++VDS+ D ++ T E IL E
Sbjct: 61 DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG 120
Query: 122 ---LIFANKQDLPGALDDAAVSEAL--ELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174
LI NK +L A + + +AL E+ K+ R+ K + L
Sbjct: 121 IDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLD 178
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196 | Back alignment and structure |
|---|
Score = 146 bits (369), Expect = 5e-45
Identities = 32/166 (19%), Positives = 61/166 (36%), Gaps = 16/166 (9%)
Query: 6 SRMFSSLFGNKEARILVLGLDNAGKTTI----LYRLQMGEVVSTIPTIGFNVETVQYN-N 60
S + F + RIL++GL +GK++I +++ E + T + + +
Sbjct: 9 SGRENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSF 68
Query: 61 IKFQVWDLGGQTSIRPYW---RCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELK 117
+ FQ+WD GQ F T A+IYV+D+ D + +
Sbjct: 69 VNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNP 128
Query: 118 GAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163
+F +K D +S+ ++ ++ A G
Sbjct: 129 DMNFEVFIHKVDG--------LSDDHKIETQRDIHQRANDDLADAG 166
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} Length = 227 | Back alignment and structure |
|---|
Score = 144 bits (364), Expect = 7e-44
Identities = 37/221 (16%), Positives = 68/221 (30%), Gaps = 47/221 (21%)
Query: 5 FSRMFSSLFGNKEARILVLG--LDNAGKTTILYRLQMGEVVST-------IPTIGFNVET 55
+ SL E R + G L+ + +L + E+ T I IG V
Sbjct: 4 VTSFLHSLIIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNF 63
Query: 56 VQYNNIKFQV---------------------------------WDLGGQTSIRPYWRCYF 82
N KF + G + S+ P +
Sbjct: 64 QLNNQHKFNILILYSTTRKERDRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVC 123
Query: 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKG----AVALIFANKQDLPGALDDAA 138
+ IYV ++ R + E H + + G + ++ Q +
Sbjct: 124 EVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFY 183
Query: 139 VSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
++ L L+ + N W + T A G G++W+ ++S
Sbjct: 184 LAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVES 223
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 132 bits (332), Expect = 4e-38
Identities = 21/117 (17%), Positives = 44/117 (37%), Gaps = 5/117 (4%)
Query: 67 DLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKG----AVAL 122
G + S+ P + + IYV ++ R + E H + + G + +
Sbjct: 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLV 252
Query: 123 IFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
+ Q + ++ L L+ + N W + T A G G++W+ ++S
Sbjct: 253 LSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVES 308
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 4e-35
Identities = 30/179 (16%), Positives = 63/179 (35%), Gaps = 20/179 (11%)
Query: 17 EARILVLGLDNAGKTTI----LYRLQMGEVVSTIPTIGFNVETVQYN-NIKFQVWDLGGQ 71
+++L++G +GK+++ + TI +++ N+ +WD GGQ
Sbjct: 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQ 62
Query: 72 TS-----IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEEL--KGAVALIF 124
F + +I+V D T+ ++ E F L++ A +
Sbjct: 63 DVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLK-DIEIFAKALKQLRKYSPDAKIFVL 121
Query: 125 ANKQDLPGALDDAAVSEAL------ELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177
+K DL + + + + F T I E L++ + +L
Sbjct: 122 LHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTS-IWDESLYKAWSQIVCSL 179
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331 | Back alignment and structure |
|---|
Score = 85.5 bits (211), Expect = 2e-20
Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 12/120 (10%)
Query: 20 ILVLGLDNAGKTTIL----YRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIR 75
+L++G+ GK++I + +Q + + T ++E I V +L GQ +
Sbjct: 2 VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYF 60
Query: 76 PYW---RCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEE--EELKGAVALIFANKQDL 130
F + A++YV+DS D A I+E + + +K D
Sbjct: 61 EPSYDSERLFKSVGALVYVIDSQDEYI--NAITNLAMIIEYAYKVNPSINIEVLIHKVDG 118
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 2e-10
Identities = 25/169 (14%), Positives = 54/169 (31%), Gaps = 26/169 (15%)
Query: 20 ILVLGLDNAGKTTILYRLQMGE---VVSTIPTIG--FNVETVQYNN-----IKFQVWDLG 69
++++G +GKTT+L +L + + T+G +Q + + VWD
Sbjct: 5 LMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFA 64
Query: 70 GQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAI---LEEEELKG--AVALIF 124
G+ + + V D + + E A+ L + + + ++
Sbjct: 65 GREEFYSTHPHFMTQRALYLAVYD------LSKGQAEVDAMKPWLFNIKARASSSPVILV 118
Query: 125 ANKQDLPGALDDAAVS-----EALELHKIKNRQWAIFKTCAIKGEGLFE 168
D+ A E L + F + + L +
Sbjct: 119 GTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAK 167
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 5e-10
Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 9/159 (5%)
Query: 20 ILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTSI 74
+++LG GK++I+ R + + PTIG F + V N +KF++WD GQ
Sbjct: 6 LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERF 65
Query: 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL 134
Y+ N +A + V D + A+ L E+ K + + NK D
Sbjct: 66 ASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKE-LHEQASKDIIIALVGNKIDXLQEG 124
Query: 135 DDAAVSEALELHKIKNRQWAIFKTCAIKGEG---LFEGM 170
+ V+ + + F+T A GE +F G+
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGI 163
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 2e-09
Identities = 37/183 (20%), Positives = 70/183 (38%), Gaps = 31/183 (16%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEV-VSTIP--TIGFNVETVQYNNIKFQVWDLGG-- 70
+ +++ G N GK+T+L L + +++ P T G NV + ++Q+ D G
Sbjct: 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLL 225
Query: 71 ------------QTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEE--EEL 116
Q + + +IY+ D S+ EE + EE E
Sbjct: 226 DRPISERNEIEKQAILALRYLGN-----LIIYIFDPSEHCG--FPLEEQIHLFEEVHGEF 278
Query: 117 KGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNT 176
K L+ NK D+ + + + ++ + K A+KG G+ + + T
Sbjct: 279 KDLPFLVVINKIDVADEENIKRLEKFVKEKGLN-----PIKISALKGTGIDLVKEEIIKT 333
Query: 177 LKS 179
L+
Sbjct: 334 LRP 336
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 9e-09
Identities = 25/170 (14%), Positives = 52/170 (30%), Gaps = 24/170 (14%)
Query: 15 NKEARILVLGLDNAGKTTILYRLQMGEVV-STIPTIGFNV------------ETVQYNNI 61
+E ++ ++G AGKT++L +L T G NV +
Sbjct: 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKEC 98
Query: 62 KFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVA 121
F WD GGQ + + + + + ++DS +
Sbjct: 99 LFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLRHIEK-----YGGKSPV 153
Query: 122 LIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEG---LFE 168
++ NK D + + + + + G+G + +
Sbjct: 154 IVVMNKIDEN---PSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAK 200
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Length = 228 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 1e-08
Identities = 28/179 (15%), Positives = 61/179 (34%), Gaps = 18/179 (10%)
Query: 17 EARILVLGLDNAGKTTILYRLQMGEV-VSTIP--TIGFNVETVQYNNIKFQVWD------ 67
+ I++ G N GK++ + + V V + T V + K+Q+ D
Sbjct: 29 KKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLD 88
Query: 68 --LGGQTSIRPYWRCYFPNTEAVI-YVVDSSDTDRIQTAK--EEFHAILEEEELKGAVAL 122
+ +I + VI +++D S+ + + F++I + +
Sbjct: 89 RAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSI--KSVFSNKSIV 146
Query: 123 IFANKQDLPGALDDAAVSEAL--ELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
I NK D + ++ L ++ + G G+ + LK+
Sbjct: 147 IGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKN 205
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* Length = 402 | Back alignment and structure |
|---|
Score = 52.1 bits (124), Expect = 2e-08
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 42 VVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD--- 98
+ + T G Q + + F ++D+GGQ R W F + A+I+VV SS +
Sbjct: 198 LRCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVI 257
Query: 99 -------RIQTAKEEFHAILEEEELKGAVALIFANKQDL 130
R+Q A F +I L+ ++F NKQDL
Sbjct: 258 REDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... Length = 353 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 2e-08
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 44 STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD----- 98
+ + T G + ++ F+++D+GGQ S R W F A+I+ V SD D
Sbjct: 176 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 235
Query: 99 -----RIQTAKEEFHAILEEEELKGAVALIFANKQDL 130
R+ + + F +I + ++F NK+DL
Sbjct: 236 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 5e-08
Identities = 32/139 (23%), Positives = 54/139 (38%), Gaps = 16/139 (11%)
Query: 20 ILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTSI 74
++++G GKTT + R GE + T+G + N IKF VWD GQ
Sbjct: 18 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF 77
Query: 75 RPYWRCYFPNTEAVIYVVD--SSDT-DRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131
Y+ + I + D S T + + + E ++ NK D+
Sbjct: 78 GGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-----NIPIVLCGNKVDIK 132
Query: 132 GALDDAAVSEALELHKIKN 150
D ++++ H+ KN
Sbjct: 133 ---DRKVKAKSIVFHRKKN 148
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* Length = 362 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 6e-08
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 44 STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD----- 98
+ PT G + + N+ F++ D+GGQ S R W F + +++++V SS+ D
Sbjct: 184 ARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLME 243
Query: 99 -----RIQTAKEEFHAILEEEELKGAVALIFANKQDL 130
R+ + F I+ ++F NK DL
Sbjct: 244 DRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 280
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* Length = 327 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 2e-07
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 44 STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD----- 98
+PT G ++ F++ D+GGQ S R W F N +++++V S+ D
Sbjct: 150 VRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVE 209
Query: 99 -----RIQTAKEEFHAILEEEELKGAVALIFANKQDL 130
R++ +K F I+ + + ++F NK+DL
Sbjct: 210 SDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 246
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 8e-07
Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 23/134 (17%)
Query: 8 MFSSLFGNKEARILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IK 62
M+ LF +++++G GK+ +L R E + + TIG F ++Q + IK
Sbjct: 1 MYDYLF-----KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 55
Query: 63 FQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAI------LEEEEL 116
Q+WD GQ R Y+ + V D + + + L +
Sbjct: 56 AQIWDTAGQERYRRITSAYYRGAVGALLVYDIAK-------HLTYENVERWLKELRDHAD 108
Query: 117 KGAVALIFANKQDL 130
V ++ NK DL
Sbjct: 109 SNIVIMLVGNKSDL 122
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 1e-06
Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 18/123 (14%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
+ +++G GK+ +L + TIG F V + IK Q+WD GQ S
Sbjct: 23 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 82
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAI---LEEEEL---KGAVALIFANK 127
R R Y+ + V D + +E F+ + LE+ V ++ NK
Sbjct: 83 FRSITRSYYRGAAGALLVYDITR-------RETFNHLTSWLEDARQHSSSNMVIMLIGNK 135
Query: 128 QDL 130
DL
Sbjct: 136 SDL 138
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 1e-06
Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 14/134 (10%)
Query: 7 RMFSSLFGNKEAR--ILVLGLDNAGKTTILYRLQMGEVVST-IPTIG--FNVETVQYNN- 60
M S FGN + ++ LG + GKT+++ R +T TIG F +T+ +
Sbjct: 2 TMSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 61
Query: 61 -IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAK---EEFHAILEEEEL 116
++ Q+WD GQ R Y ++ + V D ++T+ ++ + E
Sbjct: 62 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDD----VRTERG 117
Query: 117 KGAVALIFANKQDL 130
+ ++ NK DL
Sbjct: 118 SDVIIMLVGNKTDL 131
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 2e-06
Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 18/124 (14%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
+I++ G GK++ L RL E + T+G F ++T+ + Q+WD GQ
Sbjct: 30 KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER 89
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAI------LEEEELKGAVALIFANK 127
R + YF + V+ + D T ++ F I +E+ + ++ NK
Sbjct: 90 FRSIAKSYFRKADGVLLLYDV-------TCEKSFLNIREWVDMIEDAAHETVPIMLVGNK 142
Query: 128 QDLP 131
D+
Sbjct: 143 ADIR 146
|
| >3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 2e-06
Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 12/120 (10%)
Query: 20 ILVLGLDNAGKTTILYRLQMGEVVST-IPTIG--FNVETVQYNN--IKFQVWDLGGQTSI 74
++ LG + GKT+++ R +T TIG F +T+ + ++ Q+WD G
Sbjct: 19 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERF 78
Query: 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAK---EEFHAILEEEELKGAVALIFANKQDLP 131
R Y ++ + V D ++ + Q ++ + E + ++ NK DL
Sbjct: 79 RSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDD----VRTERGSDVIIMLVGNKTDLA 134
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 3e-06
Identities = 30/123 (24%), Positives = 45/123 (36%), Gaps = 18/123 (14%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
+I+++G GK+ +L R E + + TIG F T++ IK Q+WD GQ
Sbjct: 15 KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAI------LEEEELKGAVALIFANK 127
R Y+ + V D S + L E + NK
Sbjct: 75 YRAITSAYYRGAVGALIVYDISK-------SSSYENCNHWLSELRENADDNVAVGLIGNK 127
Query: 128 QDL 130
DL
Sbjct: 128 SDL 130
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 3e-06
Identities = 28/123 (22%), Positives = 47/123 (38%), Gaps = 18/123 (14%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
+++++G GKT +L R E + TIG F+ TV +K Q+WD G
Sbjct: 27 KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 86
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAI------LEEEELKGAVALIFANK 127
R Y+ + V D + + + + L + V ++ NK
Sbjct: 87 YRAITSAYYRGAVGALLVFDLTK-------HQTYAVVERWLKELYDHAEATIVVMLVGNK 139
Query: 128 QDL 130
DL
Sbjct: 140 SDL 142
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 4e-06
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 10/122 (8%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYN---NIKFQVWDLGGQT 72
+I+VLG +GKT++ TIG F + + N+ Q+WD+GGQT
Sbjct: 8 KIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQT 67
Query: 73 SIRPYWRCYFPNTEAVIYVVDSSDT---DRIQTAKEEFHAILEEEELKGAVALIFANKQD 129
Y + V+ V D ++ + ++ + EE E + VAL+ NK D
Sbjct: 68 IGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV-GNKID 126
Query: 130 LP 131
L
Sbjct: 127 LE 128
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 4e-06
Identities = 36/124 (29%), Positives = 53/124 (42%), Gaps = 18/124 (14%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
+IL++G GK+ +L R + S I TIG F ++TV N +K Q+WD GQ
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAI------LEEEELKGAVALIFANK 127
R Y+ +I V D +D + F I + E A L+ NK
Sbjct: 65 FRTITTAYYRGAMGIILVYDITD-------ERTFTNIKQWFKTVNEHANDEAQLLLVGNK 117
Query: 128 QDLP 131
D+
Sbjct: 118 SDME 121
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 4e-06
Identities = 37/120 (30%), Positives = 51/120 (42%), Gaps = 12/120 (10%)
Query: 20 ILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTSI 74
+ +LG GK++I++R + PTIG F +TVQY N KF +WD G
Sbjct: 9 VCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERF 68
Query: 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAK---EEFHAILEEEELKGAVALIFANKQDLP 131
R Y+ + A I V D + + T K E L + V I NK DL
Sbjct: 69 RALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRE----LRQHGPPSIVVAIAGNKCDLT 124
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 5e-06
Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 18/123 (14%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
+ LV+G GK+ +L++ + + TIG F V +K Q+WD GQ
Sbjct: 27 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAI---LEEEEL---KGAVALIFANK 127
R R Y+ + V D + +E ++++ L + V ++ NK
Sbjct: 87 FRSVTRSYYRGAAGALLVYDITS-------RETYNSLAAWLTDARTLASPNIVVILCGNK 139
Query: 128 QDL 130
+DL
Sbjct: 140 KDL 142
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 5e-06
Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 18/123 (14%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
+ +++G GK+ +L++ + + TIG F ++ + IK Q+WD GQ
Sbjct: 17 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 76
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAI---LEEEEL---KGAVALIFANK 127
R R Y+ + V D + + ++ + L + V ++ NK
Sbjct: 77 FRAVTRSYYRGAAGALMVYDITR-------RSTYNHLSSWLTDARNLTNPNTVIILIGNK 129
Query: 128 QDL 130
DL
Sbjct: 130 ADL 132
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 5e-06
Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 14/151 (9%)
Query: 6 SRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFN-VETVQYNN--I 61
S M + F + + +V+G GKT +L IPT+ N V + +
Sbjct: 19 SHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPV 78
Query: 62 KFQVWDLGGQ---TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKG 118
+WD GQ +RP +P T+ + + + +++ +
Sbjct: 79 NLGLWDTAGQEDYDRLRPL---SYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPN 134
Query: 119 AVALIFANKQDLPGALDDAAVSEALELHKIK 149
++ K DL DD E L+ K+
Sbjct: 135 TPIILVGTKLDLR---DDKDTIEKLKEKKLT 162
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 5e-06
Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 23/139 (16%)
Query: 20 ILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTSI 74
+L++G + GKT+ L+R + + T+G F V+TV + +K Q+WD GQ
Sbjct: 26 LLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERY 85
Query: 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAI------LEEEELKGAVALIFANKQ 128
R Y+ I + D ++ +E F+A+ ++ A ++ NK
Sbjct: 86 RTITTAYYRGAMGFILMYDITN-------EESFNAVQDWATQIKTYSWDNAQVILVGNKC 138
Query: 129 DLPGALDDAAVS--EALEL 145
D+ ++ V + L
Sbjct: 139 DME---EERVVPTEKGQLL 154
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 6e-06
Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 23/140 (16%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
++L++G + GKT+ L+R + + T+G F V+TV ++ IK Q+WD GQ
Sbjct: 24 KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQER 83
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAI------LEEEELKGAVALIFANK 127
R Y+ + + D ++ +E F A+ ++ A ++ NK
Sbjct: 84 YRTITTAYYRGAMGFLLMYDIAN-------QESFAAVQDWATQIKTYSWDNAQVILVGNK 136
Query: 128 QDLPGALDDAAVS--EALEL 145
DL D+ V + L
Sbjct: 137 CDLE---DERVVPAEDGRRL 153
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 6e-06
Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 23/140 (16%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
+IL++G + GKT+ L+R + + T+G F V+T+ N+ IK Q+WD G
Sbjct: 10 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER 69
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAI------LEEEELKGAVALIFANK 127
R Y+ I + D ++ +E F+A+ ++ A L+ NK
Sbjct: 70 YRTITTAYYRGAMGFILMYDITN-------EESFNAVQDWSTQIKTYSWDNAQVLLVGNK 122
Query: 128 QDLPGALDDAAVS--EALEL 145
D+ D+ VS +L
Sbjct: 123 CDME---DERVVSSERGRQL 139
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 6e-06
Identities = 36/119 (30%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 20 ILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTSI 74
+ +LG GK++I+ R + PTIG F +TV N KF +WD GQ
Sbjct: 26 VCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERF 85
Query: 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAK---EEFHAILEEEELKGAVALIFANKQDL 130
Y+ + A + V D + D T K +E L+E + V I NK DL
Sbjct: 86 HSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKE----LKEHGPENIVMAIAGNKCDL 140
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} Length = 354 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 7e-06
Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 11/96 (11%)
Query: 46 IPTIGFNVETV-QYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSD-------- 96
+ I F+ + + ++++D+GGQ + R W F AVI+ S+
Sbjct: 167 VVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFED 226
Query: 97 --TDRIQTAKEEFHAILEEEELKGAVALIFANKQDL 130
+R+ KE F +L++ + ++F NK D+
Sbjct: 227 EQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDI 262
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 9e-06
Identities = 36/123 (29%), Positives = 52/123 (42%), Gaps = 18/123 (14%)
Query: 20 ILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTSI 74
IL++G GK+ +L R + S I TIG F ++TV N +K Q+WD GQ
Sbjct: 23 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERF 82
Query: 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAI------LEEEELKGAVALIFANKQ 128
R Y+ +I V D +D + F I + E A L+ NK
Sbjct: 83 RTITTAYYRGAMGIILVYDVTD-------ERTFTNIKQWFKTVNEHANDEAQLLLVGNKS 135
Query: 129 DLP 131
D+
Sbjct: 136 DME 138
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 1e-05
Identities = 33/136 (24%), Positives = 52/136 (38%), Gaps = 17/136 (12%)
Query: 20 ILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTSI 74
+++LG GKT+++ R + I T+G F + + + +WD GQ
Sbjct: 9 VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF 68
Query: 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAK---EEFHAILEEEELKGAVALIFANKQDLP 131
Y+ ++ I V D +D D Q K +E L + I NK DL
Sbjct: 69 HALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKE----LRKMLGNEICLCIVGNKIDLE 124
Query: 132 GALDDAAVS--EALEL 145
+ VS EA
Sbjct: 125 ---KERHVSIQEAESY 137
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 1e-05
Identities = 35/139 (25%), Positives = 56/139 (40%), Gaps = 23/139 (16%)
Query: 20 ILVLGLDNAGKTTILYRLQMGEVVST-IPTIG--FNVETVQYNN--IKFQVWDLGGQTSI 74
+L++G GK+ +L R + I TIG F + T++ + IK Q+WD GQ
Sbjct: 36 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 95
Query: 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAI------LEEEELKGAVALIFANKQ 128
R Y+ +I V D +D +E F+ + ++ + L+ NK
Sbjct: 96 RTITSSYYRGAHGIIVVYDVTD-------QESFNNVKQWLQEIDRYASENVNKLLVGNKC 148
Query: 129 DLPGALDDAAVS--EALEL 145
DL V A E
Sbjct: 149 DLT---TKKVVDYTTAKEF 164
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 1e-05
Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 23/140 (16%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
++L++G GKT +L+R + I TIG F + T++ + IK Q+WD GQ
Sbjct: 10 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 69
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAI------LEEEELKGAVALIFANK 127
R Y+ ++ V D ++ ++ F I +EE +I NK
Sbjct: 70 FRTITTAYYRGAMGIMLVYDITN-------EKSFDNIRNWIRNIEEHASADVEKMILGNK 122
Query: 128 QDLPGALDDAAVS--EALEL 145
D+ D VS +L
Sbjct: 123 CDVN---DKRQVSKERGEKL 139
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 1e-05
Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 18/123 (14%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
+ LV+G GK+ +L++ + + TIG F + + +K Q+WD GQ
Sbjct: 12 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 71
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAI---LEEEEL---KGAVALIFANK 127
R R Y+ + V D + +E ++A+ L + + + V ++ NK
Sbjct: 72 FRSVTRSYYRGAAGALLVYDITS-------RETYNALTNWLTDARMLASQNIVIILCGNK 124
Query: 128 QDL 130
+DL
Sbjct: 125 KDL 127
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 1e-05
Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 18/123 (14%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
+++++G GK+ +L R E + + TIG F ++Q + IK Q+WD G
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAI---LEEEEL---KGAVALIFANK 127
R Y+ + V D + + + L+E V ++ NK
Sbjct: 91 YRAITSAYYRGAVGALLVYDIAK-------HLTYENVERWLKELRDHADSNIVIMLVGNK 143
Query: 128 QDL 130
DL
Sbjct: 144 SDL 146
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 1e-05
Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 19/125 (15%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE--VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQT 72
+++++G GKT +L R + G + I T+G F + + + +K Q+WD GQ
Sbjct: 12 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 71
Query: 73 SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAI---LEEEEL---KGAVALIFAN 126
R Y+ + A++ + D ++ K F I L E ++ N
Sbjct: 72 RFRSVTHAYYRDAHALLLLYDVTN-------KASFDNIQAWLTEIHEYAQHDVALMLLGN 124
Query: 127 KQDLP 131
K D
Sbjct: 125 KVDSA 129
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 1e-05
Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 23/140 (16%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
++L++G GK+ +L R S I TIG F + T++ + IK Q+WD GQ
Sbjct: 18 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAI------LEEEELKGAVALIFANK 127
R Y+ +I V D +D +E F+ + ++ + L+ NK
Sbjct: 78 FRTITSSYYRGAHGIIVVYDVTD-------QESFNNVKQWLQEIDRYASENVNKLLVGNK 130
Query: 128 QDLPGALDDAAVS--EALEL 145
DL V A E
Sbjct: 131 CDLT---TKKVVDYTTAKEF 147
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 1e-05
Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 23/140 (16%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
+I+++G GKT ++ R G TIG F ++TV+ N +K Q+WD GQ
Sbjct: 28 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 87
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAI---LEEEEL---KGAVALIFANK 127
R + Y+ + A+I D + +E F + L E E + ++ NK
Sbjct: 88 FRSITQSYYRSANALILTYDITC-------EESFRCLPEWLREIEQYASNKVITVLVGNK 140
Query: 128 QDLPGALDDAAVS--EALEL 145
DL + VS A E
Sbjct: 141 IDLA---ERREVSQQRAEEF 157
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-05
Identities = 30/148 (20%), Positives = 62/148 (41%), Gaps = 27/148 (18%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
+++++G GKT+++ R + T+G F ++TV+ I+ Q+WD GQ
Sbjct: 28 QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 87
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAI------LEEEELKGAVALIFANK 127
Y+ + + +I V D + KE F + +++ + A L+ NK
Sbjct: 88 FNSITSAYYRSAKGIILVYDITK-------KETFDDLPKWMKMIDKYASEDAELLLVGNK 140
Query: 128 QDLPGALDDAAVSE------ALELHKIK 149
D D ++ A ++ ++
Sbjct: 141 LDCE---TDREITRQQGEKFAQQITGMR 165
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 2e-05
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 14/127 (11%)
Query: 14 GNKEAR--ILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVW 66
GNK + +++LG GK++++ R G+ TIG F +TV ++ +KF++W
Sbjct: 1 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 67 DLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAK---EEFHAILEEEELKGAVALI 123
D GQ Y+ +A I V D ++ + AK +E L+ + V +
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE----LQRQASPNIVIAL 116
Query: 124 FANKQDL 130
NK DL
Sbjct: 117 SGNKADL 123
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-05
Identities = 25/124 (20%), Positives = 53/124 (42%), Gaps = 16/124 (12%)
Query: 20 ILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQ--- 71
+++LG GKT+++ + + TIG F + V ++ + Q+WD GQ
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERF 70
Query: 72 -TSIRPYWRCYFPNTEAVIYV--VDSSDT-DRIQTAKEEFHAILEEEELKGAVALIFANK 127
+ ++R + + V V + +T + + ++EF + + ++ NK
Sbjct: 71 QSLGVAFYR----GADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 128 QDLP 131
DL
Sbjct: 127 IDLE 130
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 2e-05
Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 9/123 (7%)
Query: 20 ILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN---IKFQVWDLGGQTS 73
+++LG GKT++++R + TIG F + V + QVWD GQ
Sbjct: 11 VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER 70
Query: 74 IRPYWRCYFPNTEAVIYV--VDSSDT-DRIQTAKEEFHAILEEEELKGAVALIFANKQDL 130
+ ++ + + V V ++ + + I++ ++EF + +I NK D
Sbjct: 71 FQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDA 130
Query: 131 PGA 133
+
Sbjct: 131 EES 133
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 3e-05
Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 18/123 (14%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
+++++G + GKT ++ R + G TIG F ++T++ +K Q+WD GQ
Sbjct: 31 KLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 90
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAI------LEEEELKGAVALIFANK 127
R + Y+ + I D + + F ++ + + V L+ NK
Sbjct: 91 FRTITQSYYRSANGAILAYDITK-------RSSFLSVPHWIEDVRKYAGSNIVQLLIGNK 143
Query: 128 QDL 130
DL
Sbjct: 144 SDL 146
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 3e-05
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 18/123 (14%)
Query: 20 ILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTSI 74
+L++G GK+ +L R I TIG F ++TV+ + +K Q+WD GQ
Sbjct: 11 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERF 70
Query: 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAI------LEEEELKGAVALIFANKQ 128
R Y+ + +I V D +D +E F+ + ++ + L+ NK
Sbjct: 71 RTITSSYYRGSHGIIIVYDVTD-------QESFNGVKMWLQEIDRYATSTVLKLLVGNKC 123
Query: 129 DLP 131
DL
Sbjct: 124 DLK 126
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 4e-05
Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 22/139 (15%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
++L++G GK+++L R S I TIG F + TV+ N +K Q+WD GQ
Sbjct: 11 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQER 70
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAI---LEE--EELKGAVALIFANKQ 128
R Y+ T VI V D + E F + L E + ++ NK
Sbjct: 71 FRTITSTYYRGTHGVIVVYDVTS-------AESFVNVKRWLHEINQNCDDVCRILVGNKN 123
Query: 129 DLPGALDDAAVS--EALEL 145
D P + V +A +
Sbjct: 124 DDP---ERKVVETEDAYKF 139
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 4e-05
Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 11/134 (8%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
+IL++G GK+++L R TIG F V+T+ + K +WD GQ
Sbjct: 17 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 76
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133
R Y+ + VI V D + D + + V ++ NK D
Sbjct: 77 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID---- 132
Query: 134 LDDAAVS--EALEL 145
++ V E L+
Sbjct: 133 KENREVDRNEGLKF 146
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 5e-05
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 20 ILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG---FNVETVQYNN--IKFQVWDLGGQ 71
I ++G GKTT + R+ G + T+G V + IKF VWD GQ
Sbjct: 14 ICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 6e-05
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQ 71
+I+V+G N GKT + YR G T TIG F V + IK Q+WD GQ
Sbjct: 22 KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 7e-05
Identities = 31/140 (22%), Positives = 60/140 (42%), Gaps = 22/140 (15%)
Query: 20 ILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQ--- 71
+++LG GK++++ R + TIG F + ++ + + Q+WD GQ
Sbjct: 10 VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF 69
Query: 72 -TSIRPYWRCYFPNTEAVIYV--VDSSDT-DRIQTAKEEFHAILEEEELKGAVALIFANK 127
+ P++R ++ + VD S + + K+EF + +E + +I NK
Sbjct: 70 RSLRTPFYR----GSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNK 125
Query: 128 QDLPGALDDAAVS--EALEL 145
D + + VS EA
Sbjct: 126 ID----ISERQVSTEEAQAW 141
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 8e-05
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 20 ILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTSI 74
+++LG AGK++++ R + V TIG F +T+ N+ +KF++WD GQ
Sbjct: 15 LVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 74
Query: 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAK---EEFHAILEEEELKGAVALIFANKQDL 130
Y+ A I V D ++ + AK +E L+ + V + NK DL
Sbjct: 75 HSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQE----LQAQGNPNMVMALAGNKSDL 129
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167 | Back alignment and structure |
|---|
Score = 40.1 bits (95), Expect = 9e-05
Identities = 25/126 (19%), Positives = 54/126 (42%), Gaps = 16/126 (12%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVST-IPTIG-FNVETVQYNN--IKFQVWDLGGQ 71
+E +++VLG GK+ + + G + PTI F + ++ ++ ++ D G
Sbjct: 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT 61
Query: 72 ---TSIRPYWRCYFPNTEAVI--YVVDSSDT-DRIQTAKEEFHAILEEEELKGAVALIFA 125
S+R Y N + I Y + + + I+ +++ I+ + + ++
Sbjct: 62 EQFASMR---DLYIKNGQGFILVYSLVNQQSFQDIKPMRDQ---IIRVKRYEKVPVILVG 115
Query: 126 NKQDLP 131
NK DL
Sbjct: 116 NKVDLE 121
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 Length = 416 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 2e-04
Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 15/100 (15%)
Query: 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEE-----EELKGAVALIFANKQDLPGALDDAAV 139
T ++YV+D++ + + + + +E L +L+ NK DL A+
Sbjct: 236 TRVLLYVLDAA-DEPL----KTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKAL 290
Query: 140 SEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
++AL A+ A+ G GL + L ++S
Sbjct: 291 ADALA-----REGLAVLPVSALTGAGLPALKEALHALVRS 325
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Length = 462 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 2e-04
Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 18/92 (19%)
Query: 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHK 147
V+ +D++ I E+ +K ++ NK DL ++ + +
Sbjct: 307 VLLTIDAATGW-----TTGDQEIYEQ--VKHRPLILVMNKIDLVEKQLITSLEYPENITQ 359
Query: 148 IKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
I T A + +G+ D L +
Sbjct: 360 -------IVHTAAAQKQGI----DSLETAILE 380
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Length = 482 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 3e-04
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHK 147
V++V+D+S EE ILE +K L+ NK D+ +++ + L +
Sbjct: 327 VLFVLDAS-----SPLDEEDRKILER--IKNKRYLVVINKVDVVEKINEEEIKNKLGTDR 379
Query: 148 IKNRQWAIFKTCAIKGEGL 166
+ K A+KGEGL
Sbjct: 380 ------HMVKISALKGEGL 392
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189 | Back alignment and structure |
|---|
Score = 38.7 bits (91), Expect = 3e-04
Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 10/125 (8%)
Query: 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFN-VETVQYNN--IKFQVWDLG 69
G+ E +++V+G D GK+ + +L V PTI + + V + + D
Sbjct: 1 GSTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTA 60
Query: 70 GQ---TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFAN 126
GQ +++R Y E + V ++T + I ++ + ++ N
Sbjct: 61 GQEEYSAMR---DQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGN 117
Query: 127 KQDLP 131
K DLP
Sbjct: 118 KCDLP 122
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184 | Back alignment and structure |
|---|
Score = 38.9 bits (91), Expect = 3e-04
Identities = 27/139 (19%), Positives = 53/139 (38%), Gaps = 16/139 (11%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFN---VETVQYNNIKFQVWDLGGQTSI 74
+I+V+G GKT +L+ +PT+ N + I+ +WD G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 68
Query: 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELK----GAVALIFANKQDL 130
+P+++AV+ D S + + + +++ E++ L+ K DL
Sbjct: 69 DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWK-----GEIQEFCPNTKMLLVGCKSDL 123
Query: 131 PGALDDAAVSEALELHKIK 149
D + L H+
Sbjct: 124 ---RTDVSTLVELSNHRQT 139
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217 | Back alignment and structure |
|---|
Score = 38.9 bits (91), Expect = 3e-04
Identities = 36/151 (23%), Positives = 58/151 (38%), Gaps = 34/151 (22%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN------------IKF 63
++L LG GKTT LYR + I T+G F + V YN +
Sbjct: 27 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 86
Query: 64 QVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAI---LEE----EEL 116
Q+WD GQ R +F + + + D + ++ F + + +
Sbjct: 87 QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTS-------QQSFLNVRNWMSQLQANAYC 139
Query: 117 KGAVALIFANKQDLPGALDDAAVS--EALEL 145
+ ++ NK DLP D V+ +A EL
Sbjct: 140 ENPDIVLIGNKADLP---DQREVNERQAREL 167
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178 | Back alignment and structure |
|---|
Score = 38.8 bits (91), Expect = 3e-04
Identities = 20/127 (15%), Positives = 49/127 (38%), Gaps = 12/127 (9%)
Query: 11 SLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIG-FNVETVQYNN--IKFQVWD 67
S+ E R+ VLG +GK+++++R G T + + + + +
Sbjct: 1 SMRSIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIRE 60
Query: 68 LGGQTSIRPYWRCYFPNTEAVIYV--VDSSDT-DRIQTAKEEFHAILEEEELKGAVALI- 123
G + + +AVI+V ++ ++ + + ++ E A+AL+
Sbjct: 61 EAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVG 115
Query: 124 FANKQDL 130
++
Sbjct: 116 TQDRISA 122
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 Length = 342 | Back alignment and structure |
|---|
Score = 39.1 bits (92), Expect = 3e-04
Identities = 22/100 (22%), Positives = 45/100 (45%), Gaps = 11/100 (11%)
Query: 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEE-----EELKGAVALIFANKQDLPGALDDAAV 139
T +++V+D S + + +++ I +E L +I ANK D+P A ++
Sbjct: 237 TRVIVHVIDMSGLEG-RDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLE- 294
Query: 140 SEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
+ + +F A+ EGL E + ++N L++
Sbjct: 295 ----AFKEKLTDDYPVFPISAVTREGLRELLFEVANQLEN 330
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168 | Back alignment and structure |
|---|
Score = 38.2 bits (90), Expect = 4e-04
Identities = 32/136 (23%), Positives = 58/136 (42%), Gaps = 18/136 (13%)
Query: 20 ILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQYNN--IKFQVWDLGGQTSI 74
++V+G GK++++ R G TIG F +Q N+ ++ +WD GQ
Sbjct: 8 MVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEF 67
Query: 75 RPYWRCYFPNTEAVIYVVDSSDT---DRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131
+ Y+ +A + V ++D + I + +E+ E+ + NK DL
Sbjct: 68 DAITKAYYRGAQACVLVFSTTDRESFEAISSWREKV-----VAEVGDIPTALVQNKIDLL 122
Query: 132 GALDDAAVS--EALEL 145
DD+ + EA L
Sbjct: 123 ---DDSCIKNEEAEGL 135
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181 | Back alignment and structure |
|---|
Score = 37.9 bits (89), Expect = 5e-04
Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 18/128 (14%)
Query: 15 NKEARILVLGLDNAGKTTILYRLQMGEVVST-IPTIG--FNVETVQYNN--IKFQVWDLG 69
+K +I +LG + GK+++ + G+ V + PTI F + + N Q+ D
Sbjct: 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTA 62
Query: 70 GQ---TSIRPYWRCYFPNTEAVI--YVVDSSDT-DRIQTAKEEFHAILEEEELKGAVALI 123
GQ + Y + I Y V S + + I+ + +L+ ++
Sbjct: 63 GQDEYSIFPQT---YSIDINGYILVYSVTSIKSFEVIKVIHGK---LLDMVGKVQIPIML 116
Query: 124 FANKQDLP 131
NK+DL
Sbjct: 117 VGNKKDLH 124
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190 | Back alignment and structure |
|---|
Score = 38.0 bits (89), Expect = 6e-04
Identities = 24/123 (19%), Positives = 46/123 (37%), Gaps = 10/123 (8%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFN-VETVQYNN--IKFQVWDLGGQ 71
E +++V+G GK+ + +L V PTI + + V + + D GQ
Sbjct: 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ 79
Query: 72 ---TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQ 128
+++R Y E + V +++ I ++ ++ NK
Sbjct: 80 EEYSAMR---DQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKC 136
Query: 129 DLP 131
DLP
Sbjct: 137 DLP 139
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195 | Back alignment and structure |
|---|
Score = 37.6 bits (88), Expect = 8e-04
Identities = 38/168 (22%), Positives = 63/168 (37%), Gaps = 39/168 (23%)
Query: 2 GIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGE-VVSTIPTIG--FNVETVQY 58
G M + L + L LG GKT++LY+ G+ I T+G F + V Y
Sbjct: 1 GSMSDGDYDYLI-----KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVY 55
Query: 59 NN------------IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEE 106
I Q+WD G R +F + + + D ++ ++
Sbjct: 56 RANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTN-------EQS 108
Query: 107 FHAI---LEEEEL----KGAVALIFANKQDLPGALDDAAVS--EALEL 145
F + + + ++ + ++ NK DL D AV EA EL
Sbjct: 109 FLNVRNWISQLQMHAYSENPDIVLCGNKSDLE---DQRAVKEEEAREL 153
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 38.3 bits (88), Expect = 9e-04
Identities = 24/150 (16%), Positives = 46/150 (30%), Gaps = 45/150 (30%)
Query: 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74
+L+ G+ +GKT + +V + + V+ I
Sbjct: 148 RPAKNVLIDGVLGSGKTWV-----ALDVCLS-----YKVQCKMDFKI------------- 184
Query: 75 RPYW----RCYFPNT-----EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFA 125
+W C P T + ++Y +D + T R + L ++ + +
Sbjct: 185 --FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI---KLRIHSIQAELRRLLK 239
Query: 126 NKQDLPGAL---DD---AAVSEALELH-KI 148
+K L + A A L KI
Sbjct: 240 SKP-YENCLLVLLNVQNAKAWNAFNLSCKI 268
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476 | Back alignment and structure |
|---|
Score = 37.9 bits (89), Expect = 9e-04
Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 17/94 (18%)
Query: 88 VIYVVDSSDTDRIQTAKEEFHAILEE--EELKGAVALIFANKQDLPGALDDAAVSEALEL 145
++Y++D ++ + E A L ANK D D AL
Sbjct: 316 ILYLLDLG-----TERLDDELTEIRELKAAHPAAKFLTVANKLDRAANAD------ALIR 364
Query: 146 HKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
+ A+ G+G+ D L +
Sbjct: 365 AIADGTGTEVIGISALNGDGI----DTLKQHMGD 394
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 182 | |||
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 100.0 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 100.0 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 100.0 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 100.0 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 100.0 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 100.0 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 100.0 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 100.0 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 100.0 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 100.0 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 100.0 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 100.0 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 100.0 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 100.0 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 100.0 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 100.0 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 100.0 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 100.0 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 100.0 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 100.0 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 100.0 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 100.0 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 100.0 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 100.0 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 100.0 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 100.0 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 100.0 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 100.0 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 100.0 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 100.0 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 100.0 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 100.0 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 100.0 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 100.0 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.98 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.98 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.98 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.98 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.98 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.98 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.98 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.98 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.98 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.98 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.98 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.98 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.98 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.98 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.98 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.98 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.98 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.97 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.97 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.97 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.97 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.97 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.97 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.97 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.97 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.97 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.97 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.97 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.97 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.97 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.97 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.97 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.97 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.97 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.97 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.97 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.97 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.97 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.97 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.97 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.97 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.97 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.97 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.97 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.97 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.97 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.97 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.97 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.97 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.97 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.97 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.97 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.97 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.97 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.97 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.97 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.97 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.97 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.97 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.97 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.97 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.97 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.97 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.97 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.97 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.96 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.96 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.96 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.96 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.93 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.96 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.96 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.96 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.96 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.95 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.95 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.95 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.95 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.95 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.95 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.95 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.95 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.94 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.94 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.94 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.94 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.94 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.94 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.93 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.93 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.93 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.93 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.93 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.93 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.93 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.92 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.92 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.92 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.92 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.92 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.92 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 99.92 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.92 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.92 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 99.92 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.92 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.92 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.91 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.91 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.91 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.91 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.91 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 99.91 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.91 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 99.9 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.9 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.9 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.9 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.9 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.9 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.9 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.9 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.89 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.89 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.89 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.89 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.89 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 99.89 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.89 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.89 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.88 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.88 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.88 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.88 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 99.88 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.87 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.87 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.87 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.86 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.86 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.86 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.85 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.85 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.84 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.84 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.84 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.83 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.83 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.83 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.82 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 99.8 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.79 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.79 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.79 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.78 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.77 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.74 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.74 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.73 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 99.72 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.72 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.72 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.71 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.71 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.7 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 99.7 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 99.69 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 99.69 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 99.69 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.69 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 99.65 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 99.61 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.59 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 99.59 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 99.57 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 99.42 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.35 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.23 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.21 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 99.21 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 99.21 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 99.12 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.11 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.05 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 98.98 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.94 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 98.92 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.9 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.84 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 98.69 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 98.55 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 98.54 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 98.51 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.45 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.25 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.22 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 98.2 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 98.13 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 98.07 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 98.0 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 97.94 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 97.77 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.66 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 97.65 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 97.64 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 97.62 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 97.61 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 97.55 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.55 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.54 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 97.54 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 97.53 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 97.51 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 97.5 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 97.5 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 97.49 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 97.46 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 97.46 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.45 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 97.42 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 97.41 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 97.41 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 97.39 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 97.39 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.38 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.37 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 97.37 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.37 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 97.37 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 97.36 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 97.36 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 97.35 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 97.34 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 97.34 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 97.33 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 97.32 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.32 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 97.32 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 97.32 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.31 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.31 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 97.31 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 97.31 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 97.31 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 97.3 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 97.3 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 97.3 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 97.29 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 97.29 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 97.29 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 97.28 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.28 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.28 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 97.27 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.27 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 97.27 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 97.27 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 97.27 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 97.27 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.27 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 97.26 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 97.25 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 97.25 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 97.25 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 97.25 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 97.24 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 97.24 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 97.24 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.23 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 97.22 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.22 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.21 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 97.2 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.2 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 97.2 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 97.2 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.19 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.19 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 97.19 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 97.18 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.18 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 97.18 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 97.18 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 97.18 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 97.17 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 97.17 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 97.17 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.15 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.15 | |
| 3end_A | 307 | Light-independent protochlorophyllide reductase ir | 97.15 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.15 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 97.13 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 97.13 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 97.13 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.12 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 97.12 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 97.11 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 97.11 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 97.11 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 97.11 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 97.11 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 97.11 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 97.1 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 97.1 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 97.09 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 97.08 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 97.07 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 97.06 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 97.05 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 97.05 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 97.04 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 97.04 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 97.04 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.04 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 97.04 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 97.03 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 97.03 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 97.02 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.02 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 97.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 97.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 97.0 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 97.0 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 97.0 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.99 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.99 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.98 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 96.98 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.98 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 96.97 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 96.97 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.97 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 96.96 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.96 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.95 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 96.94 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.94 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.92 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 96.91 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 96.9 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.9 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.9 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 96.9 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 96.9 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 96.9 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 96.89 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 96.88 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.88 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 96.88 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.88 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 96.87 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 96.87 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 96.85 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.85 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.85 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 96.84 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 96.83 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 96.83 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 96.82 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.82 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.82 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 96.81 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.81 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 96.8 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 96.8 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 96.8 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.8 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 96.8 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.79 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.79 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 96.79 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.79 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.78 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 96.78 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.78 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.77 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.74 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 96.73 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 96.73 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 96.72 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 96.71 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 96.7 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 96.7 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 96.68 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 96.66 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.66 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 96.65 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 96.65 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 96.65 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.65 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 96.64 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.62 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.62 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 96.62 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 96.61 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.61 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 96.61 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 96.6 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 96.59 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 96.58 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 96.57 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 96.57 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 96.55 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 96.55 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.54 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 96.54 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.52 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.52 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.51 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 96.5 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 96.48 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 96.48 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 96.46 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 96.46 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 96.45 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 96.44 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 96.42 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 96.42 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 96.41 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 96.41 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.4 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 96.39 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 96.39 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 96.38 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.36 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 96.36 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 96.35 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 96.34 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 96.34 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 96.33 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.33 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 96.33 | |
| 4ido_A | 457 | Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE | 96.32 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 96.32 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 96.3 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.29 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 96.28 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 96.28 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 96.28 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 96.28 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 96.27 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 96.26 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 96.26 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 96.26 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 96.25 | |
| 1u0j_A | 267 | DNA replication protein; AAA+ protein, P-loop atpa | 96.24 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 96.21 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 96.21 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 96.17 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.17 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 96.12 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 96.11 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.1 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.09 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 96.08 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 96.08 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.07 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 96.05 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 96.05 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 96.03 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 96.03 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 96.02 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 96.01 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 96.01 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 96.0 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 96.0 |
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-38 Score=212.62 Aligned_cols=179 Identities=50% Similarity=0.886 Sum_probs=153.5
Q ss_pred ChhhHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhh
Q 030120 1 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRC 80 (182)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 80 (182)
|+.+++++++ .+..+.++|+++|++|+|||||++++.++.+....+|.+.....+.+.+..+.+|||||++.+...+..
T Consensus 1 m~~~~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 79 (187)
T 1zj6_A 1 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNT 79 (187)
T ss_dssp -CHHHHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHH
T ss_pred CchHHHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 8889999988 888999999999999999999999999888777778888888888889999999999999999999999
Q ss_pred hcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecC
Q 030120 81 YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
+++++|++++|+|+++++++.....|+..+.......+.|+++|+||+|+.+....+++.+.+........+++++++||
T Consensus 80 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa 159 (187)
T 1zj6_A 80 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCA 159 (187)
T ss_dssp HHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccC
Confidence 99999999999999999999999999998877654468999999999999876666777766665444456789999999
Q ss_pred CCCCCHHHHHHHHHHHHhcC
Q 030120 161 IKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 161 ~~~~~v~~l~~~i~~~~~~~ 180 (182)
++|.|+++++++|.+.+...
T Consensus 160 ~~g~gi~~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 160 LTGEGLCQGLEWMMSRLKIR 179 (187)
T ss_dssp TTTBTHHHHHHHHHHHHCC-
T ss_pred CCCcCHHHHHHHHHHHHHHH
Confidence 99999999999999988654
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=213.22 Aligned_cols=181 Identities=56% Similarity=1.034 Sum_probs=157.1
Q ss_pred ChhhHHHHhh--hhcC-CCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccc
Q 030120 1 MGIMFSRMFS--SLFG-NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 1 ~~~~~~~~~~--~~~~-~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 77 (182)
|++.++++++ +.+. ++.++|+++|++|+|||||++++.++.+....||.+.....+.+....+.+|||||++.+...
T Consensus 3 m~~~~~~~~~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~ 82 (189)
T 2x77_A 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPY 82 (189)
T ss_dssp ---CCSCHHHHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCC
T ss_pred hHHHHHHHHHHhhhccCCCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHH
Confidence 6777777777 6777 889999999999999999999999888877788888888888889999999999999999999
Q ss_pred hhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEE
Q 030120 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFK 157 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
+..+++.+|++++|+|++++.++.....|+..++......+.|+++|+||+|+.+....+++...+........++++++
T Consensus 83 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (189)
T 2x77_A 83 WRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVK 162 (189)
T ss_dssp CSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEE
Confidence 99999999999999999999999999999988877655568999999999999876666777777765555566789999
Q ss_pred ecCCCCCCHHHHHHHHHHHHhcCC
Q 030120 158 TCAIKGEGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 158 ~Sa~~~~~v~~l~~~i~~~~~~~~ 181 (182)
+||+++.|+++++++|.+.+.+..
T Consensus 163 ~Sa~~~~gi~~l~~~l~~~i~~~~ 186 (189)
T 2x77_A 163 SSSKTGDGLVEGMDWLVERLREQG 186 (189)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHTC
T ss_pred ccCCCccCHHHHHHHHHHHHHhcc
Confidence 999999999999999999887654
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-38 Score=212.01 Aligned_cols=180 Identities=64% Similarity=1.106 Sum_probs=155.2
Q ss_pred ChhhHHHHhhhhcC-CCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchh
Q 030120 1 MGIMFSRMFSSLFG-NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWR 79 (182)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 79 (182)
|++++++.++..+. .+.++|+++|++|+|||||++++.++.+....+|.+.....+.+.+..+.+|||||++.+...+.
T Consensus 1 mg~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 80 (183)
T 1moz_A 1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWR 80 (183)
T ss_dssp -CHHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGG
T ss_pred CchHHHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence 88999999999987 89999999999999999999999988886688888888888888899999999999999999999
Q ss_pred hhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEec
Q 030120 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTC 159 (182)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
.+++.+|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+....+++.+.+........+++++++|
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 160 (183)
T 1moz_A 81 CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASS 160 (183)
T ss_dssp GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEB
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEcc
Confidence 99999999999999999999999999998887655456899999999999987666777777776554555678999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcC
Q 030120 160 AIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 160 a~~~~~v~~l~~~i~~~~~~~ 180 (182)
|++|.|+++++++|.+.+.+.
T Consensus 161 a~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 161 AIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp GGGTBTHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhc
Confidence 999999999999999988654
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-37 Score=204.84 Aligned_cols=176 Identities=47% Similarity=0.855 Sum_probs=145.2
Q ss_pred hHHHHhhhhcC-CCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhc
Q 030120 4 MFSRMFSSLFG-NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYF 82 (182)
Q Consensus 4 ~~~~~~~~~~~-~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~ 82 (182)
+++ .+++.+. ++.++|+++|++|+|||||++++.++......||.+.....+.+.+..+.+|||||++.+...+..++
T Consensus 5 ~~~-~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~ 83 (186)
T 1ksh_A 5 LLT-ILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYF 83 (186)
T ss_dssp -------------CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGC
T ss_pred hhH-HHHhhcccCCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHh
Confidence 444 4555555 78999999999999999999999988855588888888888888999999999999999999999999
Q ss_pred CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCC
Q 030120 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
+++|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+....+++.+.+........+++++++||++
T Consensus 84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (186)
T 1ksh_A 84 ESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVT 163 (186)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCC
Confidence 99999999999999999999999998887765556899999999999987666667666665444455678999999999
Q ss_pred CCCHHHHHHHHHHHHhcC
Q 030120 163 GEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~~~~ 180 (182)
|.|+++++++|.+.+.+.
T Consensus 164 ~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 164 GEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp CTTHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 999999999999987653
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-37 Score=208.22 Aligned_cols=175 Identities=54% Similarity=1.028 Sum_probs=149.4
Q ss_pred HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCC
Q 030120 5 FSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84 (182)
Q Consensus 5 ~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 84 (182)
+..++++.+..+.++|+++|++|+|||||++++.++.+....||.+.....+...+..+.+|||||++.+...+..+++.
T Consensus 17 ~~~~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 96 (192)
T 2b6h_A 17 RGSLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQN 96 (192)
T ss_dssp CCCGGGGTTTTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHT
T ss_pred HHHHHHHhccCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhcc
Confidence 44567778888999999999999999999999999888877888888888888899999999999999999999999999
Q ss_pred CCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCC
Q 030120 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
+|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+....+++...+........+++++++||++|.
T Consensus 97 ~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~ 176 (192)
T 2b6h_A 97 TQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGT 176 (192)
T ss_dssp CCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTB
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcC
Confidence 99999999999999999999999888776555689999999999997766667777777665555667899999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 030120 165 GLFEGMDWLSNTLKS 179 (182)
Q Consensus 165 ~v~~l~~~i~~~~~~ 179 (182)
|+++++++|.+.+.+
T Consensus 177 gi~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 177 GLYDGLDWLSHELSK 191 (192)
T ss_dssp THHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999988754
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-36 Score=197.50 Aligned_cols=166 Identities=66% Similarity=1.090 Sum_probs=147.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
++.++|+++|++|+|||||++++.++.+....||.+.....+.+....+.+|||||++.+...+..+++.+|++++|+|+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 84 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDS 84 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEET
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEEC
Confidence 56789999999999999999999999888888888888888888999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHH
Q 030120 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 174 (182)
+++.++.....|+..++......+.|+++|+||+|+.+.....++...+........+++++++||++|.|+++++++|.
T Consensus 85 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 164 (171)
T 1upt_A 85 CDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLV 164 (171)
T ss_dssp TCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHH
Confidence 99999999999998887765556899999999999987766677777776555556778999999999999999999999
Q ss_pred HHHhcC
Q 030120 175 NTLKSG 180 (182)
Q Consensus 175 ~~~~~~ 180 (182)
+.+.+.
T Consensus 165 ~~i~~~ 170 (171)
T 1upt_A 165 ETLKSR 170 (171)
T ss_dssp HHHHTC
T ss_pred HHHhhc
Confidence 988764
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=201.83 Aligned_cols=166 Identities=47% Similarity=0.865 Sum_probs=143.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
.+.++|+++|++|+|||||++++.+..+....||.+.....+.+.+..+.+|||||++.+...+..+++.+|++++|+|+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~ 93 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDS 93 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEET
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEEC
Confidence 67899999999999999999999998877778888888888888899999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHH
Q 030120 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 174 (182)
+++.++.....|+..++......+.|+++|+||+|+.+....+++...+........+++++++||++|.|++++|++|.
T Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 173 (181)
T 1fzq_A 94 ADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVC 173 (181)
T ss_dssp TCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHH
Confidence 99999999998988887665556899999999999987666666666665444455678899999999999999999999
Q ss_pred HHHhcC
Q 030120 175 NTLKSG 180 (182)
Q Consensus 175 ~~~~~~ 180 (182)
+.+.+.
T Consensus 174 ~~~~~~ 179 (181)
T 1fzq_A 174 KNVNAK 179 (181)
T ss_dssp HTC---
T ss_pred HHHHhc
Confidence 887654
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-36 Score=197.44 Aligned_cols=163 Identities=59% Similarity=1.091 Sum_probs=142.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCc
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDT 97 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (182)
+||+++|++|+|||||++++.++.+....||.+.....+...+..+.+|||||++.+...+..+++++|++++|+|++++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 80 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999998887778888887777888889999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHHHH
Q 030120 98 DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 177 (182)
.++.....|+..+.......+.|+++|+||+|+.+.....++...+.........++++++||++|.|+++++++|.+.+
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHH
Confidence 99999999998887765556899999999999977666677777766555555678899999999999999999999987
Q ss_pred hcC
Q 030120 178 KSG 180 (182)
Q Consensus 178 ~~~ 180 (182)
.+.
T Consensus 161 ~~~ 163 (164)
T 1r8s_A 161 RNQ 163 (164)
T ss_dssp ---
T ss_pred hhc
Confidence 653
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-35 Score=198.23 Aligned_cols=164 Identities=35% Similarity=0.616 Sum_probs=138.9
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
...+.++|+++|++|+|||||++++.++.+....+|.+.....+.+.+..+.+|||||++.+...+..+++.+|++++|+
T Consensus 19 ~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 98 (190)
T 1m2o_B 19 LWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLV 98 (190)
T ss_dssp -----CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEE
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEE
Confidence 34678899999999999999999999998877888888888888888999999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCccc-------ccCCceEEEEecCCCCCC
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHK-------IKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~Sa~~~~~ 165 (182)
|++++.++.....|+..+.......+.|+++|+||+|+.+....+++.+...... .....++++++||++|.|
T Consensus 99 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 178 (190)
T 1m2o_B 99 DAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNG 178 (190)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBS
T ss_pred ECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCC
Confidence 9999999999999998887765556899999999999987666666666554322 233567899999999999
Q ss_pred HHHHHHHHHHH
Q 030120 166 LFEGMDWLSNT 176 (182)
Q Consensus 166 v~~l~~~i~~~ 176 (182)
++++|++|.+.
T Consensus 179 i~~l~~~l~~~ 189 (190)
T 1m2o_B 179 YLEAFQWLSQY 189 (190)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhh
Confidence 99999999764
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-37 Score=210.03 Aligned_cols=159 Identities=19% Similarity=0.321 Sum_probs=122.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee--EEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeE
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
+.+.+||+++|++|+|||||+++|..+.|.. +.||++.+.. .+.. ....+.+|||+|++++..++..+++.++++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 4578999999999999999999999998877 7788875543 3333 346889999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030120 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
++|||+++..++..+..|+..+..... ++.|+++|+||+|+.+. ...++.... +...++++++|||++|.||
T Consensus 90 ilv~di~~~~Sf~~i~~~~~~i~~~~~-~~~piilVgNK~Dl~~~r~V~~~e~~~~-----a~~~~~~~~e~SAktg~nV 163 (216)
T 4dkx_A 90 VVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADKRQVSIEEGERK-----AKELNVMFIETSAKAGYNV 163 (216)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECTTCGGGCCSCHHHHHHH-----HHHHTCEEEEEBTTTTBSH
T ss_pred EEEeecchhHHHHHHHHHHHHHHHhcC-CCCeEEEEeeccchHhcCcccHHHHhhH-----HHHhCCeeEEEeCCCCcCH
Confidence 999999999999999999988865433 67999999999999643 233332222 2334567999999999999
Q ss_pred HHHHHHHHHHHh
Q 030120 167 FEGMDWLSNTLK 178 (182)
Q Consensus 167 ~~l~~~i~~~~~ 178 (182)
+++|+.|++.+.
T Consensus 164 ~e~F~~i~~~i~ 175 (216)
T 4dkx_A 164 KQLFRRVAAALP 175 (216)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHH
Confidence 999999998775
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-35 Score=197.12 Aligned_cols=163 Identities=50% Similarity=0.878 Sum_probs=142.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEe
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
..+.++|+++|.+|+|||||++++.++.+....+|.+.....+.+.+..+.+|||||++.+...+..+++.+|++++|+|
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 97 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVD 97 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEE
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 46789999999999999999999999998667888888888888899999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHH
Q 030120 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWL 173 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 173 (182)
++++.++.....|+..+.......+.|+++|+||+|+.+....+++.+.+........+++++++||++|.|++++|++|
T Consensus 98 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 177 (181)
T 2h17_A 98 STDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 177 (181)
T ss_dssp TTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHH
Confidence 99999999999999888776545689999999999998766677777776655555567899999999999999999998
Q ss_pred HHH
Q 030120 174 SNT 176 (182)
Q Consensus 174 ~~~ 176 (182)
.+.
T Consensus 178 ~~~ 180 (181)
T 2h17_A 178 MSR 180 (181)
T ss_dssp HTC
T ss_pred Hhh
Confidence 764
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-35 Score=197.72 Aligned_cols=167 Identities=32% Similarity=0.675 Sum_probs=144.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
..+.++|+++|++|+|||||++++.++.+.. ..+|.+.....+......+.+|||||++.+...+..+++.+|++++|+
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 98 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMV 98 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEE
Confidence 4678999999999999999999999988875 778888888888888999999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 172 (182)
|++++.++.....|+..+.......+.|+++|+||+|+.+.....++...+........+++++++||++|.|++++|++
T Consensus 99 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~ 178 (188)
T 1zd9_A 99 DAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQW 178 (188)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHH
Confidence 99999999999999988877654568999999999999876566677666665544556788999999999999999999
Q ss_pred HHHHHhcC
Q 030120 173 LSNTLKSG 180 (182)
Q Consensus 173 i~~~~~~~ 180 (182)
|.+.+.+.
T Consensus 179 l~~~~~~~ 186 (188)
T 1zd9_A 179 LIQHSKSR 186 (188)
T ss_dssp HHHTCC--
T ss_pred HHHHHHhh
Confidence 99877654
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-35 Score=197.92 Aligned_cols=169 Identities=37% Similarity=0.647 Sum_probs=142.1
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc--ccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 12 ~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.....+|+++|++|+|||||+++|.+..+.. +.+|.+.....+......+.+|||||++.+...+..+++.+|+++
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 91 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVI 91 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEE
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEE
Confidence 345788999999999999999999999988776 478888888888889999999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhcccc-------CCCeEEEEEeCCCCCCCCCHHHHHHHhCcccc-cCCceEEEEecCC
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEEL-------KGAVALIFANKQDLPGALDDAAVSEALELHKI-KNRQWAIFKTCAI 161 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-------~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~ 161 (182)
+|+|++++.++.....|+..++..... .+.|+++|+||+|+.+.....++...+..... ...+++++++||+
T Consensus 92 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 171 (199)
T 4bas_A 92 FVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGL 171 (199)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTT
T ss_pred EEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCC
Confidence 999999999999999999888765322 27899999999999877666777776664433 4577899999999
Q ss_pred CCCCHHHHHHHHHHHHhcC
Q 030120 162 KGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 162 ~~~~v~~l~~~i~~~~~~~ 180 (182)
+|.|++++|++|.+.+.+.
T Consensus 172 ~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 172 KGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp TTBTHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHH
Confidence 9999999999999987643
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-35 Score=198.45 Aligned_cols=165 Identities=30% Similarity=0.599 Sum_probs=132.7
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
...+.++|+++|++|+|||||++++.++.+....+|.+.....+.+.+..+.+|||||++.+...+..+++.+|++++|+
T Consensus 21 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 100 (198)
T 1f6b_A 21 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLV 100 (198)
T ss_dssp CTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEE
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEE
Confidence 45678899999999999999999999988877778888888888888899999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCccc------------ccCCceEEEEecC
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHK------------IKNRQWAIFKTCA 160 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa 160 (182)
|++++.++.....|+..+.......+.|+++|+||+|+.+....+++.+...... .....++++++||
T Consensus 101 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 180 (198)
T 1f6b_A 101 DCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 180 (198)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBT
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEEC
Confidence 9999999999999999887765556899999999999977656666666554321 0125678999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q 030120 161 IKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 161 ~~~~~v~~l~~~i~~~~ 177 (182)
++|+|++++|++|.+.+
T Consensus 181 ~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 181 LKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp TTTBSHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 99999999999998654
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-34 Score=192.96 Aligned_cols=166 Identities=42% Similarity=0.763 Sum_probs=139.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC-cc-cccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGE-VV-STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~-~~-~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
..+.++|+++|++|+|||||++++.+.. +. ...+|.+.....+.+.+..+.+|||||++.+...+..+++.+|++++|
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 97 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFV 97 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 4678999999999999999999999887 33 377788888888888889999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhcccc--CCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEEEL--KGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
+|++++.++.....|+..+...... .+.|+++|+||+|+.+....+++............+++++++||++|.|++++
T Consensus 98 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 177 (190)
T 2h57_A 98 IDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEG 177 (190)
T ss_dssp EETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHH
Confidence 9999999999998898888776443 57899999999999876666666666653333345789999999999999999
Q ss_pred HHHHHHHHhc
Q 030120 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~i~~~~~~ 179 (182)
+++|.+.+.+
T Consensus 178 ~~~l~~~i~~ 187 (190)
T 2h57_A 178 VDWLQDQIQT 187 (190)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 9999988764
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-34 Score=206.43 Aligned_cols=167 Identities=59% Similarity=1.093 Sum_probs=145.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEe
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVD 93 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 93 (182)
..+.++|+++|++|+|||||+++|.++.+....||.+.....+...+..+.+|||||++.+...+..+++.+|++|+|+|
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D 241 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 241 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEE
T ss_pred ccCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 35678999999999999999999999998887788988888888899999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHH
Q 030120 94 SSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWL 173 (182)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 173 (182)
+++..++.....++..++......+.|+++|+||+|+.+.....++...+........+++++++||++|.|++++|++|
T Consensus 242 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l 321 (329)
T 3o47_A 242 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 321 (329)
T ss_dssp TTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHH
Confidence 99999999999999988877666789999999999998777777888888776666778899999999999999999999
Q ss_pred HHHHhcC
Q 030120 174 SNTLKSG 180 (182)
Q Consensus 174 ~~~~~~~ 180 (182)
.+.+.+.
T Consensus 322 ~~~l~~~ 328 (329)
T 3o47_A 322 SNQLRNQ 328 (329)
T ss_dssp HHHHTC-
T ss_pred HHHHHhc
Confidence 9988654
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=184.77 Aligned_cols=160 Identities=14% Similarity=0.103 Sum_probs=105.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccccccccccee-eEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~-~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+.+||+++|++|+|||||++++.+.......++.+... ..+.. ....+.+|||||++.+...+..+++.+|++++|+
T Consensus 1 ~~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 1 SVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 36899999999999999999999877665444444333 23333 3467889999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
|++++.++.....|+..+.......+.|+++|+||+|+.+.. ...+.... ....+++++++||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~l~ 155 (166)
T 3q72_A 81 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRAC-----AVVFDCKFIETSAALHHNVQALF 155 (166)
T ss_dssp ETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHH-----HHHTTCEEEECBGGGTBSHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHH-----HHHhCCcEEEeccCCCCCHHHHH
Confidence 999999999999999888776555689999999999996532 22222111 12234689999999999999999
Q ss_pred HHHHHHHhcC
Q 030120 171 DWLSNTLKSG 180 (182)
Q Consensus 171 ~~i~~~~~~~ 180 (182)
++|.+.+.+.
T Consensus 156 ~~l~~~~~~~ 165 (166)
T 3q72_A 156 EGVVRQIRLR 165 (166)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999987653
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-33 Score=184.79 Aligned_cols=161 Identities=17% Similarity=0.192 Sum_probs=127.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
.+.++|+++|++|+|||||++++.++.+.. ..+|.+... ..+...+ ..+.+|||||++.+...+..+++.+|++++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 83 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 83 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEE
Confidence 467899999999999999999999877666 556666443 3344454 677999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
|+|++++.++.....|+..+.......+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.|+++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 158 (181)
T 3t5g_A 84 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA-----ESWNAAFLESSAKENQTAVD 158 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEECCTTSHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHH-----HHhCCcEEEEecCCCCCHHH
Confidence 99999999999999998888776555679999999999995432 223322222 22356899999999999999
Q ss_pred HHHHHHHHHhcC
Q 030120 169 GMDWLSNTLKSG 180 (182)
Q Consensus 169 l~~~i~~~~~~~ 180 (182)
+|+.+.+.+...
T Consensus 159 l~~~l~~~~~~~ 170 (181)
T 3t5g_A 159 VFRRIILEAEKM 170 (181)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 999999987654
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=184.42 Aligned_cols=157 Identities=22% Similarity=0.362 Sum_probs=124.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
+.++|+++|++|+|||||++++.++.+.. ..++.+.. ...+.+. ...+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 35899999999999999999999988765 56666644 3444454 3588999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC-----CHHHHHHHhCcccccCCceEEEEecCCCCCC
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-----DDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 155 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLA-----EEKGLLFFETSAKTGEN 155 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHH-----HHHTCEEEECCTTTCTT
T ss_pred EEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCC
Confidence 999999999998888887776543 3578999999999996431 122222111 22346899999999999
Q ss_pred HHHHHHHHHHHHh
Q 030120 166 LFEGMDWLSNTLK 178 (182)
Q Consensus 166 v~~l~~~i~~~~~ 178 (182)
++++|++|.+.+.
T Consensus 156 i~~l~~~l~~~i~ 168 (170)
T 1ek0_A 156 VNDVFLGIGEKIP 168 (170)
T ss_dssp HHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=182.80 Aligned_cols=164 Identities=22% Similarity=0.290 Sum_probs=127.4
Q ss_pred hhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEEC--CEEEEEEECCCCCCCccchhhhcCCC
Q 030120 11 SLFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNT 85 (182)
Q Consensus 11 ~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~ 85 (182)
.......++|+++|++|+|||||++++.+..+.. ..++.+.. ...+.+. ...+.+|||||++.+...+..+++.+
T Consensus 6 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 85 (181)
T 2efe_B 6 AGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGA 85 (181)
T ss_dssp ----CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTC
T ss_pred CCCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccC
Confidence 3445678999999999999999999999988766 45555543 3444444 46899999999999999999999999
Q ss_pred CeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCC
Q 030120 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
|++++|+|++++.++.....|+..+.... .++.|+++|+||+|+.+.. ..++..... ...+++++++||++|
T Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g 159 (181)
T 2efe_B 86 AAAIIVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYA-----QENGLFFMETSAKTA 159 (181)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEECCSSSC
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHH-----HHcCCEEEEEECCCC
Confidence 99999999999999988888888776543 2578999999999996432 233333322 123568999999999
Q ss_pred CCHHHHHHHHHHHHhcC
Q 030120 164 EGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 164 ~~v~~l~~~i~~~~~~~ 180 (182)
.|+++++++|.+.+.+.
T Consensus 160 ~gi~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 160 TNVKEIFYEIARRLPRV 176 (181)
T ss_dssp TTHHHHHHHHHHTCC--
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999877653
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-32 Score=183.38 Aligned_cols=159 Identities=16% Similarity=0.262 Sum_probs=124.1
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...+.+||+++|++|+|||||++++.++.+.. ..+|.+.....+.+.+ ..+.+|||+|++.+. +++.+|+++
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i 90 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV 90 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEE
Confidence 35678999999999999999999999988776 5555444445556655 567789999998776 667899999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC----CCCHHHHHHHhCcccccCCceEEEEecCCCCCC
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG----ALDDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
+|||++++.++.....|+..+.......+.|+++|+||+|+.+ ....++...... ....++++++||++|.|
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~----~~~~~~~~e~Sa~~~~g 166 (184)
T 3ihw_A 91 FVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLST----DLKRCTYYETCATYGLN 166 (184)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHH----HTTTCEEEEEBTTTTBT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHH----HcCCCeEEEecCCCCCC
Confidence 9999999999999998988887654445789999999999842 122333322221 12236899999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 030120 166 LFEGMDWLSNTLKSG 180 (182)
Q Consensus 166 v~~l~~~i~~~~~~~ 180 (182)
++++|+++.+.+.+.
T Consensus 167 v~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 167 VERVFQDVAQKVVAL 181 (184)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887653
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=181.59 Aligned_cols=160 Identities=14% Similarity=0.084 Sum_probs=114.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccce--eeEEEECC--EEEEEEECCCCCC--CccchhhhcCCCCeE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFN--VETVQYNN--IKFQVWDLGGQTS--IRPYWRCYFPNTEAV 88 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~--~~~~~~~~~~~~d~i 88 (182)
.+.++|+++|++|+|||||++++.+..+....++.+.+ ...+.+.+ ..+.+|||||++. +......+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 46789999999999999999999998876644444433 34455554 4788999999987 456667788999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030120 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
++|+|++++.++.....|+..+.......+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi 156 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACA-----VVFDCKFIETSATLQHNV 156 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHH-----HHHTSEEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHH-----HHcCCeEEEEecCCCCCH
Confidence 9999999999999988888877665444579999999999996532 222222111 123467999999999999
Q ss_pred HHHHHHHHHHHhc
Q 030120 167 FEGMDWLSNTLKS 179 (182)
Q Consensus 167 ~~l~~~i~~~~~~ 179 (182)
+++|++|.+.+..
T Consensus 157 ~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 157 AELFEGVVRQLRL 169 (175)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=183.24 Aligned_cols=163 Identities=18% Similarity=0.280 Sum_probs=127.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccc--ceeeEEEECC---EEEEEEECCCCCCCccchhhhcCCCCe
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNN---IKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~---~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
..+.++|+++|++|+|||||++++.++.+.. ..+|.+ .....+.+.+ ..+.+|||||++.+...+..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 4678999999999999999999999988765 556665 4455666654 789999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhccc--cCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCC
Q 030120 88 VIYVVDSSDTDRIQTAKEEFHAILEEEE--LKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
+++|+|++++.++.....|+..+..... ....|+++|+||+|+.+. ...++...... ..+++++++||++|
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 157 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQ-----ENGFSSHFVSAKTG 157 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCEEEEECTTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHH-----HcCCcEEEEeCCCC
Confidence 9999999999998888888777654221 123448999999999642 22333322221 22467999999999
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 030120 164 EGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 164 ~~v~~l~~~i~~~~~~~~ 181 (182)
.|++++|++|.+.+.+.+
T Consensus 158 ~gi~~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 158 DSVFLCFQKVAAEILGIK 175 (178)
T ss_dssp TTHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHhhh
Confidence 999999999999887653
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=180.55 Aligned_cols=161 Identities=20% Similarity=0.310 Sum_probs=129.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+++|++|+|||||++++.+..+.. ..++.+.. ...+.+. ...+.+|||||++.+...+..+++.+|+++
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 457899999999999999999999988765 55665543 3444443 468899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC-CHHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
+|+|++++.++.....|+..+.......+.|+++|+||+|+.+.. ..++..... ...+++++++||+++.|+++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~ 167 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFA-----RKHSMLFIEASAKTCDGVQC 167 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHH-----HHcCCEEEEecCCCCCCHHH
Confidence 999999999998888888888665444679999999999995432 223322222 22346799999999999999
Q ss_pred HHHHHHHHHhcC
Q 030120 169 GMDWLSNTLKSG 180 (182)
Q Consensus 169 l~~~i~~~~~~~ 180 (182)
+|++|.+.+.+.
T Consensus 168 l~~~l~~~~~~~ 179 (195)
T 1x3s_A 168 AFEELVEKIIQT 179 (195)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHhh
Confidence 999999988754
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=187.14 Aligned_cols=163 Identities=13% Similarity=0.134 Sum_probs=125.3
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeE-EE--ECCEEEEEEECCCCCCCccchhhhcCCCCeE
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET-VQ--YNNIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~-~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
+..+.+||+++|++|+|||||+++|.++.+.. ..+|.+..... +. .....+.+|||||++.+...+..+++.+|++
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 99 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY 99 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence 34678999999999999999999999988776 55555543322 22 2567889999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030120 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
++|+|++++.++.....|+..+.......+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.|+
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v 174 (201)
T 3oes_A 100 VLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLA-----ESWGATFMESSARENQLT 174 (201)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEECCTTCHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHH-----HHhCCeEEEEeCCCCCCH
Confidence 9999999999999999999888776555678999999999986432 222222221 223458999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 030120 167 FEGMDWLSNTLKSG 180 (182)
Q Consensus 167 ~~l~~~i~~~~~~~ 180 (182)
+++|++|.+.+.+.
T Consensus 175 ~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 175 QGIFTKVIQEIARV 188 (201)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987654
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=181.95 Aligned_cols=159 Identities=21% Similarity=0.326 Sum_probs=126.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+++|++|+|||||++++.++.+.. ..++.+... ..+.+. ...+.+|||||++.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 467899999999999999999999888766 555655443 344443 568899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|+|++++.++.....|+..+.... .++.|+++|+||+|+.+. ...++..... ...+++++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi~ 157 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYA-----DDNSLLFMETSAKTSMNVN 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 9999999999988888888776543 257899999999998542 2223332222 2245689999999999999
Q ss_pred HHHHHHHHHHhc
Q 030120 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~i~~~~~~ 179 (182)
+++++|.+.+.+
T Consensus 158 ~l~~~i~~~~~~ 169 (170)
T 1r2q_A 158 EIFMAIAKKLPK 169 (170)
T ss_dssp HHHHHHHHTSCC
T ss_pred HHHHHHHHHHhh
Confidence 999999987754
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=180.54 Aligned_cols=160 Identities=19% Similarity=0.262 Sum_probs=120.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee--EEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeE
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
.++.++|+++|++|+|||||++++.+..+.. ..++.+.... .+.+. ...+.+|||||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 3567999999999999999999999888765 6666665443 34443 35789999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030120 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+. ...++..... ...+++++++||++|.|+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi 156 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYA-----ESVGAKHYHTSAKQNKGI 156 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEEBTTTTBSH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHHH-----HHcCCeEEEecCCCCCCH
Confidence 99999999999988888877764432 246899999999999643 2233333222 223468999999999999
Q ss_pred HHHHHHHHHHHhc
Q 030120 167 FEGMDWLSNTLKS 179 (182)
Q Consensus 167 ~~l~~~i~~~~~~ 179 (182)
+++|++|.+.+.+
T Consensus 157 ~~l~~~l~~~~~~ 169 (170)
T 1z08_A 157 EELFLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998764
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-31 Score=176.08 Aligned_cols=159 Identities=17% Similarity=0.211 Sum_probs=125.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee-EEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+.++|+++|++|+|||||++++.++.+.. ..+|.+.... .+.. ....+.+|||||++.+...+..+++.+|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 36899999999999999999999988766 5555554332 2233 346789999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
+|++++.++.....|+..+.......+.|+++|+||+|+.+.. ..++...... ...+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l 157 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR----QWCNCAFLESSAKSKINVNEI 157 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH----HTTSCEEEECBTTTTBSHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHH----HccCCcEEEecCCCCCCHHHH
Confidence 9999999998888888887665444679999999999996432 2233322221 123568999999999999999
Q ss_pred HHHHHHHHh
Q 030120 170 MDWLSNTLK 178 (182)
Q Consensus 170 ~~~i~~~~~ 178 (182)
+++|.+.+.
T Consensus 158 ~~~l~~~i~ 166 (167)
T 1c1y_A 158 FYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998764
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-31 Score=178.19 Aligned_cols=161 Identities=17% Similarity=0.189 Sum_probs=128.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
..+.+||+++|++|+|||||++++.++.+.. ..++.+... ......+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 94 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 94 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 4678999999999999999999999888766 555555433 3334444 45667999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCC-CCCCH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAI-KGEGL 166 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~v 166 (182)
+|+|++++.++.....|+..+.......+.|+++|+||+|+.+. ...++...... ..+++++++||+ ++.|+
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~~v 169 (183)
T 3kkq_A 95 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMAT-----KYNIPYIETSAKDPPLNV 169 (183)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHH-----HHTCCEEEEBCSSSCBSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHH-----HhCCeEEEeccCCCCCCH
Confidence 99999999999999999888876555568899999999999652 23333332222 223569999999 99999
Q ss_pred HHHHHHHHHHHhc
Q 030120 167 FEGMDWLSNTLKS 179 (182)
Q Consensus 167 ~~l~~~i~~~~~~ 179 (182)
+++|++|.+.+.+
T Consensus 170 ~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 170 DKTFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998764
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=183.01 Aligned_cols=162 Identities=17% Similarity=0.226 Sum_probs=129.9
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeE
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
+..+.++|+++|++|+|||||++++.+..+.. ..+|++... ..+...+ ..+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 45678999999999999999999999988766 555665443 3344544 5788999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030120 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
++|+|++++.++.....|+..+.......+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.|+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv 159 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFG-----ASHHVAYFEASAKLRLNV 159 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECBTTTTBSH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCeEEEecCCCCCCH
Confidence 9999999999999999998888665555678999999999996432 222222221 223568999999999999
Q ss_pred HHHHHHHHHHHhc
Q 030120 167 FEGMDWLSNTLKS 179 (182)
Q Consensus 167 ~~l~~~i~~~~~~ 179 (182)
++++++|.+.+.+
T Consensus 160 ~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 160 DEAFEQLVRAVRK 172 (181)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-31 Score=178.81 Aligned_cols=162 Identities=23% Similarity=0.275 Sum_probs=128.0
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeE--EEE--CCEEEEEEECCCCCCCccchhhhcCCCCe
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET--VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
..++.++|+++|++|+|||||++++.+..+.. ..++.+..... +.. ....+.+|||||++.+...+..+++.+|+
T Consensus 19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (192)
T 2fg5_A 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAA 98 (192)
T ss_dssp --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCE
Confidence 34678999999999999999999999988765 66666654433 333 45789999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCC
Q 030120 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
+++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+. ...++..... ...+++++++||+++.|
T Consensus 99 iilV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 172 (192)
T 2fg5_A 99 AVIVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYA-----ESIGAIVVETSAKNAIN 172 (192)
T ss_dssp EEEEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HTTTCEEEECBTTTTBS
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCcC
Confidence 999999999999999888887775432 357899999999999642 2233333332 23457899999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 030120 166 LFEGMDWLSNTLKSG 180 (182)
Q Consensus 166 v~~l~~~i~~~~~~~ 180 (182)
+++++++|.+.+.+.
T Consensus 173 i~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 173 IEELFQGISRQIPPL 187 (192)
T ss_dssp HHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999887654
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=179.60 Aligned_cols=161 Identities=19% Similarity=0.274 Sum_probs=124.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccc-ceeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG-FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
++.++|+++|++|+|||||++++.+..+.. ..+|+. .....+...+ ..+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 467899999999999999999999888766 444443 2233344444 457789999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
|+|++++.++.....|+..+.......+.|+++|+||+|+.+.....+....+. ...+++++++||++|.|++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~gi~~l~ 157 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLA----RSYGIPFIETSAKTRQGVDDAF 157 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHH----HHHTCCEEECCTTTCTTHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHH
Confidence 999999999999998988887765556899999999999975433222222222 1223569999999999999999
Q ss_pred HHHHHHHhc
Q 030120 171 DWLSNTLKS 179 (182)
Q Consensus 171 ~~i~~~~~~ 179 (182)
++|.+.+.+
T Consensus 158 ~~l~~~~~~ 166 (189)
T 4dsu_A 158 YTLVREIRK 166 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987753
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=181.06 Aligned_cols=160 Identities=21% Similarity=0.326 Sum_probs=124.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccc--ceeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
++.++|+++|++|+|||||++++.+..+.. ..+|.+ +....+.+.+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 567899999999999999999999988765 566655 3345555655 68999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCce-EEEEecCCCCCCH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQW-AIFKTCAIKGEGL 166 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v 166 (182)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+. ...++...... ..++ +++++||++|.|+
T Consensus 107 lv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~~SA~~g~gi 180 (201)
T 2hup_A 107 LAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAE-----HYDILCAIETSAKDSSNV 180 (201)
T ss_dssp EEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCSEEEECBTTTTBSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHH-----HcCCCEEEEEeCCCCCCH
Confidence 9999999999988888887775543 357899999999999642 23333333222 2345 7999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 030120 167 FEGMDWLSNTLKSG 180 (182)
Q Consensus 167 ~~l~~~i~~~~~~~ 180 (182)
+++|++|.+.+.+.
T Consensus 181 ~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 181 EEAFLRVATELIMR 194 (201)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887653
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.5e-32 Score=181.15 Aligned_cols=160 Identities=18% Similarity=0.275 Sum_probs=126.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeE
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
.++.++|+++|++|+|||||++++.++.+.. ..++.+.. ...+... ...+.+|||||++.+...+..+++.+|++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence 4678999999999999999999999988766 55555533 3444454 36889999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030120 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+. ...++...... ..+++++++||++|.|+
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi 165 (179)
T 1z0f_A 92 LMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFAE-----ENGLLFLEASAKTGENV 165 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTH
T ss_pred EEEEeCcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCH
Confidence 99999999999888888877765432 257899999999999542 22233333222 23468999999999999
Q ss_pred HHHHHHHHHHHhc
Q 030120 167 FEGMDWLSNTLKS 179 (182)
Q Consensus 167 ~~l~~~i~~~~~~ 179 (182)
+++|+++.+.+.+
T Consensus 166 ~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 166 EDAFLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988754
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.7e-31 Score=176.03 Aligned_cols=163 Identities=15% Similarity=0.283 Sum_probs=127.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeE
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
..+.++|+++|++|+|||||++++.+..+.. ..++.+... ..+.+.+ ..+.+|||||++.+...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 3567899999999999999999999888765 566666443 4445554 5899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccc---cCCCeEEEEEeCCCCCCCC-CHHHHHHHhCcccccCCceEEEEecCCCCC
Q 030120 89 IYVVDSSDTDRIQTAKEEFHAILEEEE---LKGAVALIFANKQDLPGAL-DDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
++|+|++++.++.....|+..+..... ..+.|+++|+||+|+.+.. ..++...... ....++++++||++|.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~ 159 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR----DNGDYPYFETSAKDAT 159 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH----HTTCCCEEECCTTTCT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHH----hcCCceEEEEeCCCCC
Confidence 999999999988888888777754322 2578999999999996432 2333333222 1345679999999999
Q ss_pred CHHHHHHHHHHHHhcC
Q 030120 165 GLFEGMDWLSNTLKSG 180 (182)
Q Consensus 165 ~v~~l~~~i~~~~~~~ 180 (182)
|++++|+++.+.+.+.
T Consensus 160 gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 160 NVAAAFEEAVRRVLAT 175 (177)
T ss_dssp THHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999988654
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=7.6e-32 Score=181.36 Aligned_cols=160 Identities=19% Similarity=0.331 Sum_probs=126.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeE
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
.+..++|+++|++|+|||||++++.+..+.. ..++.+... ..+... ...+.+|||||++.+...+..+++.+|++
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 4567999999999999999999999988765 556665443 334443 46889999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030120 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ..++...... ..+++++++||++|.|+
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gi 172 (189)
T 2gf9_A 99 LLMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRLAD-----DLGFEFFEASAKENINV 172 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHHHH-----HcCCeEEEEECCCCCCH
Confidence 99999999999988888877765432 3578999999999996432 2223222221 22457999999999999
Q ss_pred HHHHHHHHHHHhc
Q 030120 167 FEGMDWLSNTLKS 179 (182)
Q Consensus 167 ~~l~~~i~~~~~~ 179 (182)
++++++|.+.+.+
T Consensus 173 ~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 173 KQVFERLVDVICE 185 (189)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-31 Score=177.37 Aligned_cols=159 Identities=23% Similarity=0.355 Sum_probs=121.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
..++|+++|++|+|||||++++.+..+.. ..++.+... ..+... ...+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 56899999999999999999999988765 556655443 444444 3688999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC-CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ..++...... ..+++++++||++|.|++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~l 155 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAK-----ELGIPFIESSAKNDDNVNEI 155 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHHH-----HHTCCEEECBTTTTBSHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHHHHHH-----HcCCeEEEEECCCCCCHHHH
Confidence 999999998888888887775543 2578999999999995432 2222222221 12357999999999999999
Q ss_pred HHHHHHHHhcC
Q 030120 170 MDWLSNTLKSG 180 (182)
Q Consensus 170 ~~~i~~~~~~~ 180 (182)
+++|.+.+.+.
T Consensus 156 ~~~l~~~~~~~ 166 (170)
T 1g16_A 156 FFTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999987653
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=6e-32 Score=178.62 Aligned_cols=159 Identities=25% Similarity=0.319 Sum_probs=126.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+++|++|+|||||++++.++.+.. ..++.+... ..+.+. ...+.+|||||++.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 457899999999999999999999988765 566665443 344444 378899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|+|++++.++.....|+..+... ..+..|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 157 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYA-----DSIHAIFVETSAKNAININ 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCcCHH
Confidence 999999999988888787776543 33678999999999996432 222222221 2234689999999999999
Q ss_pred HHHHHHHHHHhc
Q 030120 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~i~~~~~~ 179 (182)
+++++|.+.+.+
T Consensus 158 ~l~~~i~~~i~~ 169 (170)
T 1z0j_A 158 ELFIEISRRIPS 169 (170)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHHHHHhc
Confidence 999999988754
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.98 E-value=5.4e-32 Score=180.52 Aligned_cols=161 Identities=19% Similarity=0.341 Sum_probs=119.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc--ccccccceeeE--EEECC--EEEEEEECCCCCCCccchhhhcCCCCe
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIGFNVET--VQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
.+..++|+++|++|+|||||++++.+..+.. ..+|++..... +...+ ..+.+|||||++.+...+..+++.+|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 4678999999999999999999999988753 56666655443 34444 588999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCC
Q 030120 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
+++|+|++++.++.....|+..+..... .+.|+++|+||+|+.+.. ...+...... ..+++++++||+++.|
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~g 160 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLAK-----EYGLPFMETSAKTGLN 160 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHHH-----HHTCCEEECCTTTCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHHHHH-----HcCCeEEEEeCCCCCC
Confidence 9999999999988888888877755332 578999999999997532 2223222221 1235799999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 030120 166 LFEGMDWLSNTLKSG 180 (182)
Q Consensus 166 v~~l~~~i~~~~~~~ 180 (182)
++++++++.+.+.+.
T Consensus 161 i~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 161 VDLAFTAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988654
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.9e-32 Score=183.26 Aligned_cols=159 Identities=21% Similarity=0.347 Sum_probs=99.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
+..++|+++|++|+|||||++++.+..+.. ..+|.+.. ...+.+.+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 567999999999999999999999887765 55666644 34455555 78999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 159 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLA-----LDYGIKFMETSAKANINVE 159 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHHH-----HHHTCEEEECCC---CCHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccCCccCcCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 9999999999998888887775532 2578999999999996532 233333222 1234689999999999999
Q ss_pred HHHHHHHHHHhc
Q 030120 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~i~~~~~~ 179 (182)
++|++|.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (183)
T 2fu5_C 160 NAFFTLARDIKA 171 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987753
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=6.3e-32 Score=180.24 Aligned_cols=159 Identities=23% Similarity=0.378 Sum_probs=125.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc--eeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeE
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
.++.++|+++|++|+|||||++++.+..+.. ..++.+. ....+.+.+ ..+.+|||||++.+...+..+++.+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 3678999999999999999999999988765 5555553 445555665 7899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030120 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
++|+|++++.++.....|+..+.... .+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.|+
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi 158 (181)
T 3tw8_B 86 IVVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFA-----GQMGIQLFETSAKENVNV 158 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCCEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHHH-----HHcCCeEEEEECCCCCCH
Confidence 99999999999999888888775543 479999999999986432 222222221 122357999999999999
Q ss_pred HHHHHHHHHHHhc
Q 030120 167 FEGMDWLSNTLKS 179 (182)
Q Consensus 167 ~~l~~~i~~~~~~ 179 (182)
++++++|.+.+.+
T Consensus 159 ~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 159 EEMFNCITELVLR 171 (181)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987764
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=8.4e-32 Score=181.95 Aligned_cols=159 Identities=22% Similarity=0.347 Sum_probs=127.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc--eeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
+..++|+++|++|+|||||+++|.+..+.. ..++.+. ....+.+.+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 567899999999999999999999988766 5566554 344555555 67999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--HHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+... ..+..... ...+++++++||++|.|++
T Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gv~ 167 (196)
T 3tkl_A 94 VVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFA-----DSLGIPFLETSAKNATNVE 167 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCCEEEECTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCcEEEEeCCCCCCHH
Confidence 9999999999988888877775443 25789999999999965432 22222221 2234579999999999999
Q ss_pred HHHHHHHHHHhc
Q 030120 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~i~~~~~~ 179 (182)
++|++|.+.+.+
T Consensus 168 ~l~~~l~~~i~~ 179 (196)
T 3tkl_A 168 QSFMTMAAEIKK 179 (196)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=4.7e-31 Score=177.86 Aligned_cols=162 Identities=20% Similarity=0.340 Sum_probs=129.2
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee---EEEEC-----------CEEEEEEECCCCCCCccc
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE---TVQYN-----------NIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~---~~~~~-----------~~~~~~~D~~g~~~~~~~ 77 (182)
..++.++|+++|++|+|||||++++.+..+.. ..+|.+.... .+... ...+.+|||||++.+...
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 34678999999999999999999999988765 6667665543 33333 468999999999999999
Q ss_pred hhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEE
Q 030120 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAI 155 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~ 155 (182)
+..+++.+|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+. ...++...... ..++++
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~ 161 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAE-----KYGIPY 161 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCCE
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH-----HcCCCE
Confidence 99999999999999999999999888888888766544467999999999999642 22333332221 123579
Q ss_pred EEecCCCCCCHHHHHHHHHHHHhc
Q 030120 156 FKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 156 ~~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
+++||+++.|+++++++|.+.+.+
T Consensus 162 ~~~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 162 FETSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999987653
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=4.3e-32 Score=179.31 Aligned_cols=159 Identities=11% Similarity=0.082 Sum_probs=115.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECC--EEEEEEECCCCCCCcc-chhhhcCCCCeEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNN--IKFQVWDLGGQTSIRP-YWRCYFPNTEAVIY 90 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~-~~~~~~~~~d~ii~ 90 (182)
.+||+++|++|+|||||++++.+..... ..++.+.....+.+.+ ..+.+|||||++.+.. .+..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 5799999999999999999998766544 2223334444555544 6778999999998865 66777888999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
|+|+++++++.....|+..+.......+.|+++|+||+|+.+. ....+..... ...+++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 156 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA-----GTLSCKHIETSAALHHNTRE 156 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECBTTTTBSHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHH-----HHcCCcEEEecCccCCCHHH
Confidence 9999999999999999998877655457999999999998632 2223322222 23356899999999999999
Q ss_pred HHHHHHHHHhcC
Q 030120 169 GMDWLSNTLKSG 180 (182)
Q Consensus 169 l~~~i~~~~~~~ 180 (182)
+|+++.+.+...
T Consensus 157 l~~~l~~~i~~~ 168 (169)
T 3q85_A 157 LFEGAVRQIRLR 168 (169)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999988654
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-31 Score=181.12 Aligned_cols=160 Identities=19% Similarity=0.296 Sum_probs=123.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeE-EEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET-VQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~-~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
..+.+||+++|++|+|||||++++.++.+.. ..+|.+..... +...+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 99 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL 99 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence 4577999999999999999999999988766 56666644333 33444 56699999999999999999999999999
Q ss_pred EEEeCCCcccHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCCCC----CCHHHHHHHhCcccccCCceE-EEEecCCCC
Q 030120 90 YVVDSSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLPGA----LDDAAVSEALELHKIKNRQWA-IFKTCAIKG 163 (182)
Q Consensus 90 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~ 163 (182)
+|+|++++.++... ..|+..+... ..+.|+++|+||+|+.+. ...++...... ..++. ++++||++|
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~ 172 (194)
T 3reg_A 100 LCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQ-----KLGCVAYIEASSVAK 172 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHH-----HHTCSCEEECBTTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHHH-----hcCCCEEEEeecCCC
Confidence 99999999999887 4455444322 357999999999999643 22233322222 12333 999999999
Q ss_pred CCHHHHHHHHHHHHhcC
Q 030120 164 EGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 164 ~~v~~l~~~i~~~~~~~ 180 (182)
.|++++|++|.+.+.+.
T Consensus 173 ~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 173 IGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp BSHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999988755
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=8.5e-32 Score=183.24 Aligned_cols=165 Identities=16% Similarity=0.209 Sum_probs=129.2
Q ss_pred hhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce-eeEEEECC--EEEEEEECCCCCCCccchhhhcCCC
Q 030120 10 SSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN-VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNT 85 (182)
Q Consensus 10 ~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~ 85 (182)
+.....+.++|+++|++|+|||||++++.+..+.. ..+|++.. ...+.+.+ ..+.+|||||++.+...+..+++.+
T Consensus 7 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 86 (206)
T 2bov_A 7 KGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG 86 (206)
T ss_dssp ----CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC
T ss_pred cCCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhC
Confidence 33445678999999999999999999999888766 55555533 33444544 5789999999999999999999999
Q ss_pred CeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCC
Q 030120 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+. ....+...... ..+++++++||++|
T Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g 161 (206)
T 2bov_A 87 EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE-----QWNVNYVETSAKTR 161 (206)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEEECTTTC
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHH-----HhCCeEEEEeCCCC
Confidence 999999999999999999888888876554457999999999999643 22333333322 22457999999999
Q ss_pred CCHHHHHHHHHHHHhc
Q 030120 164 EGLFEGMDWLSNTLKS 179 (182)
Q Consensus 164 ~~v~~l~~~i~~~~~~ 179 (182)
.|++++|++|.+.+.+
T Consensus 162 ~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 162 ANVDKVFFDLMREIRA 177 (206)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999987754
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.98 E-value=3.4e-32 Score=184.71 Aligned_cols=159 Identities=23% Similarity=0.332 Sum_probs=126.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
++.++|+++|++|+|||||++++.++.+.. ..+|.+.. ...+.+.+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 567999999999999999999999988765 66666644 34455554 57899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+. ...++..... ...+++++++||++|.|++
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~g~gv~ 177 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFS-----EAQDMYYLETSAKESDNVE 177 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCCEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 9999999999988888887775432 357899999999999642 2233322221 1234579999999999999
Q ss_pred HHHHHHHHHHhc
Q 030120 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~i~~~~~~ 179 (182)
++|++|.+.+.+
T Consensus 178 ~l~~~l~~~i~~ 189 (201)
T 2ew1_A 178 KLFLDLACRLIS 189 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.6e-31 Score=182.12 Aligned_cols=159 Identities=22% Similarity=0.382 Sum_probs=127.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
+..++|+++|++|+|||||+++|.+..+.. ..++.+.. ...+.+.+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 567899999999999999999999988766 55666544 34455544 58999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi~ 159 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFA-----DANKMPFLETSALDSTNVE 159 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCCEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 9999999999999888887775433 3578999999999996532 222322222 1234579999999999999
Q ss_pred HHHHHHHHHHhc
Q 030120 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~i~~~~~~ 179 (182)
++|++|.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 160 DAFLTMARQIKE 171 (206)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=8e-32 Score=177.56 Aligned_cols=159 Identities=16% Similarity=0.231 Sum_probs=124.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+.++|+++|++|+|||||++++.++.+.. ..+|.+... ..+...+ ..+.+|||||++.+...+..+++.+|++++|
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 46899999999999999999999988766 455555333 3344444 5789999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
+|++++.++.....|+..+.......+.|+++|+||+|+.+. ....+...... ..+++++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l 157 (168)
T 1u8z_A 83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAD-----QWNVNYVETSAKTRANVDKV 157 (168)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTCEEEECCTTTCTTHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHH-----HcCCeEEEeCCCCCCCHHHH
Confidence 999999999999888888876655457999999999999643 22333332221 23457999999999999999
Q ss_pred HHHHHHHHhc
Q 030120 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~i~~~~~~ 179 (182)
|+++.+.+.+
T Consensus 158 ~~~l~~~i~~ 167 (168)
T 1u8z_A 158 FFDLMREIRA 167 (168)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998764
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.98 E-value=2e-32 Score=180.32 Aligned_cols=159 Identities=17% Similarity=0.225 Sum_probs=125.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc-eeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF-NVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+.++|+++|++|+|||||++++.++.+.. ..++.+. ....+...+ ..+.+|||||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 36899999999999999999999888766 4455442 234444544 4589999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
+|++++.++.....|+..+.......+.|+++|+||+|+.+.. ...+...... ..+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l 156 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAE-----EWGCPFMETSAKSKTMVDEL 156 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTSCEEEECTTCHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHH-----HhCCCEEEecCCCCcCHHHH
Confidence 9999999999998888888766555679999999999985432 2222222211 12457999999999999999
Q ss_pred HHHHHHHHhc
Q 030120 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~i~~~~~~ 179 (182)
+++|.+.+.+
T Consensus 157 ~~~l~~~~~~ 166 (167)
T 1kao_A 157 FAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999988764
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-32 Score=183.59 Aligned_cols=162 Identities=25% Similarity=0.366 Sum_probs=123.9
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc--eeeEEEECC--EEEEEEECCCCCCCc-cchhhhcCCCC
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQYNN--IKFQVWDLGGQTSIR-PYWRCYFPNTE 86 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~-~~~~~~~~~~d 86 (182)
+..+.++|+++|++|+|||||++++.++.+.. ..++.+. ....+...+ ..+.+|||||++.+. ..+..+++.+|
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 34677999999999999999999999888766 5566553 344455554 689999999999887 78888999999
Q ss_pred eEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCC-
Q 030120 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKG- 163 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~- 163 (182)
++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+.. ..++..... ...+++++++||+++
T Consensus 96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~ 170 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFA-----DTHSMPLFETSAKNPN 170 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCCEEECCSSSGG
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHH-----HHcCCEEEEEeCCcCC
Confidence 999999999999999988888888766545679999999999995432 222222221 123457999999999
Q ss_pred --CCHHHHHHHHHHHHhc
Q 030120 164 --EGLFEGMDWLSNTLKS 179 (182)
Q Consensus 164 --~~v~~l~~~i~~~~~~ 179 (182)
.|++++|++|.+.+.+
T Consensus 171 ~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 171 DNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp GGSCHHHHHHHHC-----
T ss_pred cccCHHHHHHHHHHHHhh
Confidence 9999999999887754
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-32 Score=183.05 Aligned_cols=163 Identities=12% Similarity=0.081 Sum_probs=122.0
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccccccc--ceeeEEEECC--EEEEEEECCCCCCCcc-chhhhcCCCC
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVV-STIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRP-YWRCYFPNTE 86 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~-~~~~~~~~~d 86 (182)
.....++|+++|++|+|||||+++|.+.... ...++++ .....+.+.+ ..+.+|||+|++.+.. ++..+++.+|
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 3467899999999999999999999754432 2333333 3344455544 5778999999988765 6777888999
Q ss_pred eEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCC
Q 030120 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.
T Consensus 99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a-----~~~~~~~~e~Sa~~~~ 173 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA-----GTLSCKHIETSAALHH 173 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEEEBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHH-----HHhCCEEEEEcCCCCC
Confidence 999999999999999999998887654433578999999999996432 222322221 1234679999999999
Q ss_pred CHHHHHHHHHHHHhcC
Q 030120 165 GLFEGMDWLSNTLKSG 180 (182)
Q Consensus 165 ~v~~l~~~i~~~~~~~ 180 (182)
|++++|+.+.+.+.+.
T Consensus 174 ~v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 174 NTRELFEGAVRQIRLR 189 (195)
T ss_dssp SHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988754
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.7e-32 Score=181.93 Aligned_cols=160 Identities=19% Similarity=0.306 Sum_probs=124.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccc--ceeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeE
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
..+.+||+++|++|+|||||++++.++.+.. ..++.+ .....+...+ ..+.+|||||++.+...+..+++.+|++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 97 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 97 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEE
Confidence 3678899999999999999999999988766 455555 3344555544 6889999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030120 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+. ...++..... ...+++++++||+++.|+
T Consensus 98 i~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi 171 (191)
T 2a5j_A 98 LLVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFA-----REHGLIFMETSAKTACNV 171 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEEECTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCH
Confidence 99999999999988888887775532 257899999999999642 2233332222 123457999999999999
Q ss_pred HHHHHHHHHHHhc
Q 030120 167 FEGMDWLSNTLKS 179 (182)
Q Consensus 167 ~~l~~~i~~~~~~ 179 (182)
+++|++|.+.+.+
T Consensus 172 ~~l~~~l~~~i~~ 184 (191)
T 2a5j_A 172 EEAFINTAKEIYR 184 (191)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987653
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-31 Score=180.41 Aligned_cols=159 Identities=19% Similarity=0.313 Sum_probs=126.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
++.++|+++|++|+|||||+++|.+..+.. ..++.+... ..+.. ....+.+|||||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 567999999999999999999999988776 555655433 33333 3468899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+. ....+..... ...+++++++||++|.|++
T Consensus 103 ~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 176 (193)
T 2oil_A 103 LVFDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMFA-----ENNGLLFLETSALDSTNVE 176 (193)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEECTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 9999999998888888887775532 357899999999999643 2223332222 2235689999999999999
Q ss_pred HHHHHHHHHHhc
Q 030120 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~i~~~~~~ 179 (182)
++|++|.+.+.+
T Consensus 177 ~l~~~l~~~i~~ 188 (193)
T 2oil_A 177 LAFETVLKEIFA 188 (193)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987754
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-31 Score=178.61 Aligned_cols=167 Identities=17% Similarity=0.222 Sum_probs=125.5
Q ss_pred HHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee-EEEEC--CEEEEEEECCCCCCCccchhhhc
Q 030120 7 RMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQYN--NIKFQVWDLGGQTSIRPYWRCYF 82 (182)
Q Consensus 7 ~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~ 82 (182)
.++++....+.++|+++|++|+|||||++++.++.+.. ..+|.+.... .+... ...+.+|||||++. ...+..++
T Consensus 18 ~~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~ 96 (196)
T 2atv_A 18 LYFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHM 96 (196)
T ss_dssp ---------CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHH
T ss_pred cchhccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhh
Confidence 35555566788999999999999999999999988766 5566654432 24444 36789999999988 77788889
Q ss_pred CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecC
Q 030120 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
+.+|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+. ....+...... ..+++++++||
T Consensus 97 ~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa 171 (196)
T 2atv_A 97 RWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLAT-----ELACAFYECSA 171 (196)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTSEEEECCT
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHH-----HhCCeEEEECC
Confidence 999999999999999999888888887766544467999999999999642 22233322221 22468999999
Q ss_pred CCCC-CHHHHHHHHHHHHhc
Q 030120 161 IKGE-GLFEGMDWLSNTLKS 179 (182)
Q Consensus 161 ~~~~-~v~~l~~~i~~~~~~ 179 (182)
++|. |++++|++|.+.+.+
T Consensus 172 ~~g~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 172 CTGEGNITEIFYELCREVRR 191 (196)
T ss_dssp TTCTTCHHHHHHHHHHHHHH
T ss_pred CcCCcCHHHHHHHHHHHHHh
Confidence 9999 999999999988764
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-31 Score=179.66 Aligned_cols=159 Identities=19% Similarity=0.312 Sum_probs=126.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
++.++|+++|++|+|||||++++.+..+.. ..++.+.. ...+...+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 567999999999999999999999988766 55555533 34455554 68899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+. ....+..... ...+++++++||++|.|++
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 161 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFA-----QENELMFLETSALTGENVE 161 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEecCCCCCCHH
Confidence 9999999999988888877765432 257899999999999532 2222322222 2345689999999999999
Q ss_pred HHHHHHHHHHhc
Q 030120 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~i~~~~~~ 179 (182)
++|+++.+.+.+
T Consensus 162 ~l~~~l~~~~~~ 173 (186)
T 2bme_A 162 EAFVQCARKILN 173 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-31 Score=174.64 Aligned_cols=158 Identities=17% Similarity=0.330 Sum_probs=125.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
++.++|+++|++|+|||||++++.++.+.. ..+|.+.. ...+... ...+.+|||||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 567999999999999999999999988766 56665543 3444444 458899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|+|++++.++.....|+..+.... .+.|+++|+||+|+.+. ...++...... ..+++++++||+++.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 155 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAK-----RLKLRFYRTSVKEDLNVS 155 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCEEEECBTTTTBSSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHH-----HcCCeEEEEecCCCCCHH
Confidence 9999999998888888887776543 57899999999998642 22333332221 234589999999999999
Q ss_pred HHHHHHHHHHhc
Q 030120 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~i~~~~~~ 179 (182)
+++++|.+.+.+
T Consensus 156 ~l~~~l~~~~~~ 167 (168)
T 1z2a_A 156 EVFKYLAEKHLQ 167 (168)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999988754
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-31 Score=180.07 Aligned_cols=161 Identities=23% Similarity=0.339 Sum_probs=124.3
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc--eeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCe
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
..+..++|+++|++|+|||||++++.+..+.. ..++.+. ....+.+.+ ..+.+|||||++.+...+..+++.+|+
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG 95 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 34678999999999999999999999888765 5566553 344555655 689999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC-HHHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030120 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
+++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+... ..+...... ..+++++++||+++.|+
T Consensus 96 ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi 169 (213)
T 3cph_A 96 IILVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAK-----ELGIPFIESSAKNDDNV 169 (213)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCCSCHHHHHHHHH-----HHTCCEEECBTTTTBSS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCH
Confidence 999999999988888888877775533 24789999999999953322 222222221 12357999999999999
Q ss_pred HHHHHHHHHHHhc
Q 030120 167 FEGMDWLSNTLKS 179 (182)
Q Consensus 167 ~~l~~~i~~~~~~ 179 (182)
+++|++|.+.+.+
T Consensus 170 ~~l~~~l~~~~~~ 182 (213)
T 3cph_A 170 NEIFFTLAKLIQE 182 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987653
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-31 Score=183.72 Aligned_cols=161 Identities=21% Similarity=0.258 Sum_probs=126.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEE---CC--EEEEEEECCCCCCCccchhhhcCCCCe
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY---NN--IKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~---~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
....+||+++|++|+|||||+++|+++.+.. ..+|.+.......+ .+ ..+.+|||||++.+...+..++..+|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 4578999999999999999999999887766 56666655544443 11 789999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCC
Q 030120 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
+++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ....... .....+++++++||++|.|
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~g~g 161 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVME-----VLKGKNYEYFEISAKTAHN 161 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHHH-----HTTTCCCEEEEEBTTTTBT
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHH-----HHHHcCCcEEEEecCCCCC
Confidence 999999999999988888877775443 2468999999999996531 2222222 2234567899999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 030120 166 LFEGMDWLSNTLKSG 180 (182)
Q Consensus 166 v~~l~~~i~~~~~~~ 180 (182)
++++|++|.+.+.+.
T Consensus 162 v~~l~~~l~~~~~~~ 176 (218)
T 4djt_A 162 FGLPFLHLARIFTGR 176 (218)
T ss_dssp TTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999988764
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-31 Score=181.39 Aligned_cols=158 Identities=20% Similarity=0.347 Sum_probs=125.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
+..++|+++|++|+|||||+++|.+..+.. ..++.+... ..+... ...+.+|||||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 467899999999999999999999988765 556665443 334443 468899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ...+...... ..+++++++||++|.|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 159 (203)
T 1zbd_A 86 LMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLAD-----HLGFEFFEASAKDNINVK 159 (203)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHHHH-----HHTCEEEECBTTTTBSSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHHHH-----HCCCeEEEEECCCCCCHH
Confidence 9999999999988888887775432 3578999999999996532 2222222221 224579999999999999
Q ss_pred HHHHHHHHHHh
Q 030120 168 EGMDWLSNTLK 178 (182)
Q Consensus 168 ~l~~~i~~~~~ 178 (182)
++|++|.+.+.
T Consensus 160 ~l~~~l~~~i~ 170 (203)
T 1zbd_A 160 QTFERLVDVIC 170 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.3e-31 Score=178.27 Aligned_cols=162 Identities=15% Similarity=0.236 Sum_probs=125.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee--EEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeE
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
.+..++|+++|++|+|||||++++.+..+.. ..++.+.... .+.+. ...+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 3578999999999999999999999988766 5566654433 33333 36899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccc---cCCCeEEEEEeCCCCCCCC-CHHHHHHHhCcccccCCceEEEEecCCCCC
Q 030120 89 IYVVDSSDTDRIQTAKEEFHAILEEEE---LKGAVALIFANKQDLPGAL-DDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
++|+|++++.++.....|+..+..... ..+.|+++|+||+|+.+.. ...+...... ...+++++++||++|.
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~ 160 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY----SKNNIPYFETSAKEAI 160 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH----HTTSCCEEECBTTTTB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHH----hcCCceEEEEeCCCCC
Confidence 999999999998888888777755432 1468999999999997432 2223222221 1345679999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 030120 165 GLFEGMDWLSNTLKS 179 (182)
Q Consensus 165 ~v~~l~~~i~~~~~~ 179 (182)
|++++|++|.+.+.+
T Consensus 161 gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 161 NVEQAFQTIARNALK 175 (207)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999987753
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.8e-32 Score=185.32 Aligned_cols=161 Identities=17% Similarity=0.184 Sum_probs=123.9
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeE-EEE--CCEEEEEEECCCCCCCccchhhhcCCCCeE
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET-VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~-~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
.....+||+++|++|+|||||+++|.++.+.. ..+|.+..... +.. ....+.+|||||++.+...+..+++.+|++
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 102 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV 102 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEE
Confidence 34578999999999999999999999988776 56676654432 222 457899999999999999999999999999
Q ss_pred EEEEeCCCcccHHH-HHHHHHHHHhccccCCCeEEEEEeCCCCCCC--------------CCHHHHHHHhCcccccCCce
Q 030120 89 IYVVDSSDTDRIQT-AKEEFHAILEEEELKGAVALIFANKQDLPGA--------------LDDAAVSEALELHKIKNRQW 153 (182)
Q Consensus 89 i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~ 153 (182)
++|||++++.++.. ...|+..+.... .+.|+++|+||+|+.+. ...++..... ...++
T Consensus 103 i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~ 175 (214)
T 3q3j_B 103 LLCFDISRPETVDSALKKWRTEILDYC--PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIA-----KQLGA 175 (214)
T ss_dssp EEEEETTCTHHHHHHHTHHHHHHHHHC--TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHH-----HHHTC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHH-----HHcCC
Confidence 99999999999988 566766665432 57999999999999642 2222222221 22345
Q ss_pred -EEEEecCCCCCC-HHHHHHHHHHHHhcC
Q 030120 154 -AIFKTCAIKGEG-LFEGMDWLSNTLKSG 180 (182)
Q Consensus 154 -~~~~~Sa~~~~~-v~~l~~~i~~~~~~~ 180 (182)
+++++||++|.| ++++|+.+.+.+...
T Consensus 176 ~~~~e~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 176 EIYLEGSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp SEEEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred CEEEEeccCCCcccHHHHHHHHHHHHhcc
Confidence 799999999998 999999999987643
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-31 Score=175.60 Aligned_cols=161 Identities=16% Similarity=0.220 Sum_probs=128.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
..+.++|+++|++|+|||||++++.+..+.. ..+|+.... ..+...+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 94 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence 4567999999999999999999999888766 455555333 3344444 57899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|+|++++.++.....|+..+.......+.|+++|+||+|+.+. ....+..... ...+++++++||+++.|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 169 (187)
T 2a9k_A 95 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----EQWNVNYVETSAKTRANVD 169 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHH-----HHcCCeEEEeCCCCCCCHH
Confidence 99999999999999888888877655457999999999998643 2233333322 2234689999999999999
Q ss_pred HHHHHHHHHHhc
Q 030120 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~i~~~~~~ 179 (182)
++|++|.+.+.+
T Consensus 170 ~l~~~l~~~i~~ 181 (187)
T 2a9k_A 170 KVFFDLMREIRA 181 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-31 Score=176.71 Aligned_cols=156 Identities=15% Similarity=0.181 Sum_probs=118.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccce-eeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFN-VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
.+.+||+++|++|+|||||++++.++.+....+|.+.. ...+...+ ..+.+|||||++. ..+++++|++++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv 79 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFV 79 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEE
Confidence 46799999999999999999999999887766766643 33344444 5788999999886 4577889999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhc--cccCCCeEEEEEeCCCCCC----CCCHHHHHHHhCcccccCCceEEEEecCCCCCC
Q 030120 92 VDSSDTDRIQTAKEEFHAILEE--EELKGAVALIFANKQDLPG----ALDDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~--~~~~~~~iivv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
+|++++.++.....|+..+... ....+.|+++|+||+|+.+ ....++...... ...+++++++||++|.|
T Consensus 80 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~~~~ 155 (178)
T 2iwr_A 80 FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXA----DMKRCSYYETXATYGLN 155 (178)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHH----HHSSEEEEEEBTTTTBT
T ss_pred EECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHH----hhcCCeEEEEeccccCC
Confidence 9999999999988875444332 2225789999999999842 122333322221 12357899999999999
Q ss_pred HHHHHHHHHHHHhc
Q 030120 166 LFEGMDWLSNTLKS 179 (182)
Q Consensus 166 v~~l~~~i~~~~~~ 179 (182)
++++|+++.+.+.+
T Consensus 156 i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 156 VDRVFQEVAQKVVT 169 (178)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987654
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-30 Score=174.86 Aligned_cols=157 Identities=24% Similarity=0.350 Sum_probs=125.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee--EEEECC-------------------------------
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQYNN------------------------------- 60 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~~~------------------------------- 60 (182)
++.++|+++|++|+|||||+++|++..+.. ..+|.+.... .+.+.+
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 568999999999999999999999988766 5566654333 333332
Q ss_pred --------EEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030120 61 --------IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 61 --------~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
..+.+|||||++.+...+..+++.+|++++|+|++++.++.....|+..+.... ..|+++|+||+|+.+
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D~~~ 161 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKIDKNK 161 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTTCC-
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCCccc
Confidence 789999999999999999999999999999999999999988888888776542 499999999999432
Q ss_pred -CCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHHHHhc
Q 030120 133 -ALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 133 -~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
....++...... ..+++++++||++|.|+++++++|.+.+.+
T Consensus 162 ~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 162 FQVDILEVQKYAQ-----DNNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp CCSCHHHHHHHHH-----HTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHH-----HcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 223344433332 235689999999999999999999987754
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-31 Score=176.79 Aligned_cols=163 Identities=17% Similarity=0.255 Sum_probs=115.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc--eeeEEEEC---CEEEEEEECCCCCCCccchhhhcCCCCe
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQYN---NIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
..+.++|+++|++|+|||||++++.+..+.. ..++.+. ....+.+. ...+.+|||||++.+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 3578999999999999999999999988765 5555553 33444433 4689999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhccc---cCCCeEEEEEeCCCCCCC---CCHHHHHHHhCcccccCCceEEEEecCC
Q 030120 88 VIYVVDSSDTDRIQTAKEEFHAILEEEE---LKGAVALIFANKQDLPGA---LDDAAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~iivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
+++|+|++++.++.....|+..+..... ..+.|+++|+||+|+.+. ....+...... .....+++++||+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~ 160 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK----SLGDIPLFLTSAK 160 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH----HTTSCCEEEEBTT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH----hcCCCeEEEEecC
Confidence 9999999999999888888877765432 257899999999999532 12333322221 1345679999999
Q ss_pred CCCCHHHHHHHHHHHHhcC
Q 030120 162 KGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 162 ~~~~v~~l~~~i~~~~~~~ 180 (182)
+|.|++++|++|.+.+.+.
T Consensus 161 ~~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 161 NAINVDTAFEEIARSALQQ 179 (182)
T ss_dssp TTBSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999887643
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-32 Score=184.68 Aligned_cols=159 Identities=19% Similarity=0.337 Sum_probs=126.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
+..+||+++|++|+|||||+++|.+..+.. ..++.+.. ...+.. ....+.+|||||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 577899999999999999999999988765 45555533 334433 5688999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|+|++++.++.....|+..+... ...+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.|++
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 174 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKTY-SWDNAQVILVGNKCDMEEERVVPTEKGQLLA-----EQLGFDFFEASAKENISVR 174 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCeEEEEECCCCCCHH
Confidence 999999999998888887777553 33579999999999985432 222222221 2234579999999999999
Q ss_pred HHHHHHHHHHhc
Q 030120 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~i~~~~~~ 179 (182)
++|++|.+.+.+
T Consensus 175 ~l~~~l~~~i~~ 186 (191)
T 3dz8_A 175 QAFERLVDAICD 186 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-31 Score=178.59 Aligned_cols=162 Identities=20% Similarity=0.311 Sum_probs=117.4
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc--eeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCC
Q 030120 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 12 ~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d 86 (182)
...++.++|+++|++|+|||||++++.+..+.. ..++.+. ....+.+.+ ..+.+|||||++.+...+..+++.+|
T Consensus 23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 102 (199)
T 2p5s_A 23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKAD 102 (199)
T ss_dssp -----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCS
T ss_pred cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCC
Confidence 345678999999999999999999999988765 5555553 334455544 67899999999999999999999999
Q ss_pred eEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--------CCCHHHHHHHhCcccccCCceEEEEe
Q 030120 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG--------ALDDAAVSEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
++++|+|++++.++.....|+..+... ...+.|+++|+||+|+.+ ....++..... ...+++++++
T Consensus 103 ~iilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~ 176 (199)
T 2p5s_A 103 GVLLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLA-----MTYGALFCET 176 (199)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHH-----HHHTCEEEEC
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHHHHH-----HHcCCeEEEe
Confidence 999999999999988888887766443 224789999999999852 11122221111 1235689999
Q ss_pred cCCCCCCHHHHHHHHHHHHhc
Q 030120 159 CAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 159 Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
||++|.|++++|++|.+.+.+
T Consensus 177 SA~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 177 SAKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp CTTTCTTHHHHHHHHHHHHTC
T ss_pred eCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999998764
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.9e-31 Score=177.54 Aligned_cols=160 Identities=20% Similarity=0.285 Sum_probs=121.4
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccccc-----------ccccceeeEE-----EECCEEEEEEECCCCCCCcc
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTI-----------PTIGFNVETV-----QYNNIKFQVWDLGGQTSIRP 76 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~-----------~t~~~~~~~~-----~~~~~~~~~~D~~g~~~~~~ 76 (182)
..+..+||+++|++|+|||||++.+.+....... +|.+.+.... ......+.+|||||++.+..
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 4467899999999999999999877665543322 2333322221 11346899999999999999
Q ss_pred chhhhcCCCCeEEEEEeCCC------cccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccC
Q 030120 77 YWRCYFPNTEAVIYVVDSSD------TDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKN 150 (182)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~------~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 150 (182)
.+..+++++|++++|+|+++ ..++.....|+..+. ....+.|+++|+||+|+.+....++.......
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~--~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~----- 162 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG--LTLDDVPIVIQVNKRDLPDALPVEMVRAVVDP----- 162 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT--CCTTSSCEEEEEECTTSTTCCCHHHHHHHHCT-----
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc--cccCCCCEEEEEEchhcccccCHHHHHHHHHh-----
Confidence 99999999999999999994 455666666666652 23357999999999999877666666555542
Q ss_pred Cce-EEEEecCCCCCCHHHHHHHHHHHHhc
Q 030120 151 RQW-AIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 151 ~~~-~~~~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
.++ +++++||++|.|++++|++|.+.+.+
T Consensus 163 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 163 EGKFPVLEAVATEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp TCCSCEEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred cCCceEEEEecCCCcCHHHHHHHHHHHHHH
Confidence 344 79999999999999999999987764
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-31 Score=182.64 Aligned_cols=160 Identities=22% Similarity=0.319 Sum_probs=122.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc--eeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
+..++|+++|++|+|||||+++|.+..+.. ..+|.+. ....+.+.+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 567999999999999999999999988765 5566553 344555655 68899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+. ....+..... ...+++++++||+++.|++
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 164 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFA-----QENQLLFTETSALNSENVD 164 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCCC-CCCHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 9999999999999888887775432 357899999999999642 2223332222 2235689999999999999
Q ss_pred HHHHHHHHHHhcC
Q 030120 168 EGMDWLSNTLKSG 180 (182)
Q Consensus 168 ~l~~~i~~~~~~~ 180 (182)
++|++|.+.+.+.
T Consensus 165 ~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 165 KAFEELINTIYQK 177 (223)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887653
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-30 Score=173.90 Aligned_cols=160 Identities=17% Similarity=0.150 Sum_probs=123.6
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeE
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
...+.++|+++|++|+|||||++++.+..+.. ..+|++... ..+.+.+ ..+.+|||||++.+...+..+++.+|++
T Consensus 14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 34577999999999999999999999988766 556665433 3344444 7889999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCCC--------------CHHHHHHHhCcccccCCce
Q 030120 89 IYVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGAL--------------DDAAVSEALELHKIKNRQW 153 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~~~ 153 (182)
++|+|++++.++.... .|+..+.... ++.|+++|+||+|+.+.. ..++..... ...++
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~ 166 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEYA--PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLA-----KEIGA 166 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHH-----HHHTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHH-----HHcCC
Confidence 9999999999988887 5666664432 478999999999996531 111111111 11122
Q ss_pred -EEEEecCCCCCCHHHHHHHHHHHHhc
Q 030120 154 -AIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 154 -~~~~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
+++++||++|.|++++|++|.+.+..
T Consensus 167 ~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 167 CCYVECSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred cEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 69999999999999999999988754
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=170.82 Aligned_cols=158 Identities=17% Similarity=0.247 Sum_probs=124.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce-eeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN-VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.++|+++|++|+|||||++++.+..+.. ..++.+.. ...+...+ ..+.+|||||++.+...+..++..+|++++|+
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 82 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 82 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEE
Confidence 5799999999999999999999888765 44554433 23344433 56789999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC-CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 171 (182)
|++++.++.....|+..+.......+.|+++|+||+|+.+.. ...+...... ..+++++++||++|.|++++++
T Consensus 83 d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~ 157 (166)
T 2ce2_X 83 AINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLAR-----SYGIPYIETSAKTRQGVEDAFY 157 (166)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH-----HHTCCEEEECTTTCTTHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHH-----HcCCeEEEecCCCCCCHHHHHH
Confidence 999999988888888877665444579999999999997532 2233322221 1235799999999999999999
Q ss_pred HHHHHHhc
Q 030120 172 WLSNTLKS 179 (182)
Q Consensus 172 ~i~~~~~~ 179 (182)
+|.+.+.+
T Consensus 158 ~l~~~~~~ 165 (166)
T 2ce2_X 158 TLVREIRQ 165 (166)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99998764
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-31 Score=180.08 Aligned_cols=160 Identities=15% Similarity=0.184 Sum_probs=120.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
..+.+||+++|++|+|||||++++.++.+.. ..+|++... ..+... ...+.+|||||++.+... ..+++.+|+++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i 96 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL 96 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence 4678999999999999999999999988766 566666443 233343 467889999999988764 66889999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccc--cCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecC-CCCC
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEE--LKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCA-IKGE 164 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~ 164 (182)
+|||++++.++.....|+..+..... ..+.|+++|+||+|+.+. ...++...... ..+++++++|| ++|.
T Consensus 97 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~g~ 171 (187)
T 3c5c_A 97 VVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAG-----RFGCLFFEVSACLDFE 171 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCEEEECCSSSCSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHH-----HcCCcEEEEeecCccc
Confidence 99999999999999988887765421 257899999999999542 22333322221 22457999999 8999
Q ss_pred CHHHHHHHHHHHHhc
Q 030120 165 GLFEGMDWLSNTLKS 179 (182)
Q Consensus 165 ~v~~l~~~i~~~~~~ 179 (182)
|++++|+.|.+.+.+
T Consensus 172 gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 172 HVQHVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHhh
Confidence 999999999988754
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.8e-32 Score=179.48 Aligned_cols=159 Identities=19% Similarity=0.331 Sum_probs=125.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
.+.++|+++|++|+|||||++++.+..+.. ..++.+.. ...+.+.+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 467999999999999999999999888766 55666543 34455544 58899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.|++
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 165 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKA-----KELNVMFIETSAKAGYNVK 165 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEEEBTTTTBSHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 9999999998888888887775533 2578999999999986432 222322222 1234689999999999999
Q ss_pred HHHHHHHHHHhc
Q 030120 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~i~~~~~~ 179 (182)
+++++|.+.+.+
T Consensus 166 ~l~~~l~~~~~~ 177 (179)
T 2y8e_A 166 QLFRRVAAALPG 177 (179)
T ss_dssp HHHHHHHHTCC-
T ss_pred HHHHHHHHHHhh
Confidence 999999987754
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=178.50 Aligned_cols=162 Identities=23% Similarity=0.334 Sum_probs=119.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEEC---CEEEEEEECCCCCCCcc-chhhhcCCCCeEEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYN---NIKFQVWDLGGQTSIRP-YWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~D~~g~~~~~~-~~~~~~~~~d~ii~ 90 (182)
.+.++|+++|++|+|||||++++.++.+....+++......+.+. ...+.+|||||++.+.. .+..+++.+|++++
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~ 84 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVF 84 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEE
Confidence 567999999999999999999999988877556666666666665 67899999999998887 78888999999999
Q ss_pred EEeCCCcc-cHHHHHHHHHHHHhc--cccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcc---------------------
Q 030120 91 VVDSSDTD-RIQTAKEEFHAILEE--EELKGAVALIFANKQDLPGALDDAAVSEALELH--------------------- 146 (182)
Q Consensus 91 v~d~~~~~-s~~~~~~~~~~~~~~--~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~--------------------- 146 (182)
|+|+++.. ++.....++...+.. ....+.|+++|+||+|+.+......+...+...
T Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~ 164 (214)
T 2fh5_B 85 VVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTA 164 (214)
T ss_dssp EEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------
T ss_pred EEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccc
Confidence 99999853 355555555555433 123468999999999997665543333222110
Q ss_pred --ccc---------C--CceEEEEecCCCC------CCHHHHHHHHHHH
Q 030120 147 --KIK---------N--RQWAIFKTCAIKG------EGLFEGMDWLSNT 176 (182)
Q Consensus 147 --~~~---------~--~~~~~~~~Sa~~~------~~v~~l~~~i~~~ 176 (182)
... . ..+++++|||++| .|++++|++|.+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 165 PAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 000 1 1788999999999 9999999999875
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-30 Score=176.31 Aligned_cols=161 Identities=17% Similarity=0.267 Sum_probs=121.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc--eeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeE
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
.+..++|+++|++|+|||||+++|.++.+.. ..++.+. ....+.+.+ ..+.+|||||++.+...+..+++.+|++
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i 102 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI 102 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 3567899999999999999999999988765 5555553 344455544 6889999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030120 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
++|+|++++.++.....|+..+.. ....+.|+++|+||+|+.+.. ..++...... ...+++++++||++|.|+
T Consensus 103 ilV~D~~~~~s~~~~~~~~~~i~~-~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~----~~~~~~~~~~SA~~g~gi 177 (192)
T 2il1_A 103 ILVYDITKKETFDDLPKWMKMIDK-YASEDAELLLVGNKLDCETDREITRQQGEKFAQ----QITGMRFCEASAKDNFNV 177 (192)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH----TSTTCEEEECBTTTTBSH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHH-hcCCCCcEEEEEECcccccccccCHHHHHHHHH----hcCCCeEEEEeCCCCCCH
Confidence 999999999998888877666543 333579999999999996432 2233222221 123568999999999999
Q ss_pred HHHHHHHHHHHhc
Q 030120 167 FEGMDWLSNTLKS 179 (182)
Q Consensus 167 ~~l~~~i~~~~~~ 179 (182)
+++|++|.+.+.+
T Consensus 178 ~~l~~~l~~~i~~ 190 (192)
T 2il1_A 178 DEIFLKLVDDILK 190 (192)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-30 Score=174.16 Aligned_cols=162 Identities=19% Similarity=0.241 Sum_probs=116.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce-eeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN-VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
+-+.++|+++|++|+|||||++++.++.+.. ..++.+.. ...+...+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 4567899999999999999999999887765 44444433 23444444 56899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC-CHHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
+|+|+++..++.....|+..+.......+.|+++|+||+|+.+.. ..++..+... ..+++++++||+++.|+++
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 172 (190)
T 3con_A 98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAK-----SYGIPFIETSAKTRQGVED 172 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH-----HHTCCEEECCTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHH
Confidence 999999999988888888777654443578999999999996532 2333333222 1234699999999999999
Q ss_pred HHHHHHHHHhcC
Q 030120 169 GMDWLSNTLKSG 180 (182)
Q Consensus 169 l~~~i~~~~~~~ 180 (182)
++++|.+.+.+.
T Consensus 173 l~~~l~~~~~~~ 184 (190)
T 3con_A 173 AFYTLVREIRQY 184 (190)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887653
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-31 Score=181.91 Aligned_cols=159 Identities=21% Similarity=0.332 Sum_probs=119.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccc--ceeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
++.++|+++|++|+|||||++++.++.+.. ..++.+ +....+.+.+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 567999999999999999999999888765 555555 3344455555 78999999999988888999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|+|++++.++.....|+..+..... .+.|+++|+||+|+.+. ....+..... ...+++++++||++|.|++
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~SA~~g~gi~ 176 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLAS-PNIVVILCGNKKDLDPEREVTFLEASRFA-----QENELMFLETSALTGENVE 176 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTC-TTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEECTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCCcccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 99999999999888888877754332 57899999999999542 2222322222 2245689999999999999
Q ss_pred HHHHHHHHHHhc
Q 030120 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~i~~~~~~ 179 (182)
++|++|.+.+.+
T Consensus 177 ~l~~~l~~~i~~ 188 (200)
T 2o52_A 177 EAFLKCARTILN 188 (200)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.8e-32 Score=178.08 Aligned_cols=160 Identities=19% Similarity=0.244 Sum_probs=122.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeE-EEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET-VQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~-~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+.++|+++|++|+|||||++++.++.+.. ..++.+..... +... ...+.+|||||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 46899999999999999999999988765 55665544332 3333 35789999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhcc-ccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEE-ELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
+|++++.++.....|+..+.... ...+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.|+++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~ 156 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALA-----RTWKCAFMETSAKLNHNVKE 156 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHH-----HHhCCeEEEecCCCCcCHHH
Confidence 99999988888887877665432 12468999999999985432 222222111 12346799999999999999
Q ss_pred HHHHHHHHHhcC
Q 030120 169 GMDWLSNTLKSG 180 (182)
Q Consensus 169 l~~~i~~~~~~~ 180 (182)
++++|.+.+...
T Consensus 157 l~~~l~~~~~~~ 168 (172)
T 2erx_A 157 LFQELLNLEKRR 168 (172)
T ss_dssp HHHHHHHTCCSS
T ss_pred HHHHHHHHHhhh
Confidence 999999876543
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-32 Score=185.33 Aligned_cols=160 Identities=22% Similarity=0.395 Sum_probs=125.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEEC------------CEEEEEEECCCCCCCccchh
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN------------NIKFQVWDLGGQTSIRPYWR 79 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~------------~~~~~~~D~~g~~~~~~~~~ 79 (182)
++.++|+++|++|+|||||+++|.+..+.. ..+|.+... ..+.+. ...+.+|||||++.+...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 567999999999999999999999988765 555655433 334443 56899999999999988899
Q ss_pred hhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEE
Q 030120 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFK 157 (182)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
.+++.+|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+.. ...+..... ...++++++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~ 177 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELA-----DKYGIPYFE 177 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCCEEE
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHH-----HHCCCcEEE
Confidence 9999999999999999999998888887776554333579999999999996432 223322222 123457999
Q ss_pred ecCCCCCCHHHHHHHHHHHHhc
Q 030120 158 TCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 158 ~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
+||+++.|++++|++|.+.+.+
T Consensus 178 ~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 178 TSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp EBTTTTBTHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999987653
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=176.82 Aligned_cols=163 Identities=14% Similarity=0.219 Sum_probs=121.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
....+||+++|++|+|||||++++.++.+.. ..+|++... ..+...+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 3578899999999999999999999988766 556665443 3344544 58899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHH---------hCcccccCCce-EEEEe
Q 030120 90 YVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEA---------LELHKIKNRQW-AIFKT 158 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~---------~~~~~~~~~~~-~~~~~ 158 (182)
+|+|++++.++.... .|...+ ... ..+.|+++|+||+|+.+.....+.... .........+. +++++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~-~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEV-KHF-CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLEC 179 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHH-HHH-STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHH-HHh-CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEe
Confidence 999999999888884 454444 332 247899999999999754211111000 00001111233 79999
Q ss_pred cCCCCCCHHHHHHHHHHHHh
Q 030120 159 CAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 159 Sa~~~~~v~~l~~~i~~~~~ 178 (182)
||++|.|+++++++|.+.+.
T Consensus 180 SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 180 SAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999998765
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-31 Score=182.42 Aligned_cols=162 Identities=19% Similarity=0.280 Sum_probs=128.7
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEE--E--CCEEEEEEECCCCCCCccchhhhcCCCC
Q 030120 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQ--Y--NNIKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 12 ~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~--~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d 86 (182)
......+||+++|.+|+|||||+++++.+.+.. ..++.+....... . ....+.+|||||++.+...+..+++++|
T Consensus 10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 89 (221)
T 3gj0_A 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ 89 (221)
T ss_dssp TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCC
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCC
Confidence 445778999999999999999999977666555 5666665544433 3 4478899999999999999999999999
Q ss_pred eEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030120 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
++++|+|++++.++.....|+..+.... .+.|+++|+||+|+.+..... .........+++++++||++|.|+
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~-----~~~~~~~~~~~~~~~~Sa~~~~gi 162 (221)
T 3gj0_A 90 CAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKA-----KSIVFHRKKNLQYYDISAKSNYNF 162 (221)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCG-----GGCCHHHHHTCEEEECBGGGTBTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccH-----HHHHHHHHcCCEEEEEeCCCCCCH
Confidence 9999999999999999888888886643 478999999999996543221 111122234568999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 030120 167 FEGMDWLSNTLKSG 180 (182)
Q Consensus 167 ~~l~~~i~~~~~~~ 180 (182)
+++|++|.+.+...
T Consensus 163 ~~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 163 EKPFLWLARKLIGD 176 (221)
T ss_dssp THHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999987654
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-31 Score=179.43 Aligned_cols=160 Identities=14% Similarity=0.111 Sum_probs=117.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC--cccccccccc--eeeEEEECC--EEEEEEECCCCCC-CccchhhhcCCCCe
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGE--VVSTIPTIGF--NVETVQYNN--IKFQVWDLGGQTS-IRPYWRCYFPNTEA 87 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~--~~~~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~-~~~~~~~~~~~~d~ 87 (182)
...+||+++|++|+|||||+++|.+.. +....++++. ....+.+.+ ..+.+|||+|++. .......+++.+++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 466899999999999999999999754 3343344443 334455555 4567899999886 44456677889999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCC
Q 030120 88 VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
+++|||+++..++.....|+..+.......+.|+++|+||+|+.+. ....+.. . .+...+++++++||++|.|
T Consensus 115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~-~----~a~~~~~~~~e~SAk~g~~ 189 (211)
T 2g3y_A 115 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGR-A----CAVVFDCKFIETSAAVQHN 189 (211)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHH-H----HHHHHTCEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHH-H----HHHHcCCEEEEEeCCCCCC
Confidence 9999999999999999888877765433457999999999999642 2222211 1 1122346799999999999
Q ss_pred HHHHHHHHHHHHhc
Q 030120 166 LFEGMDWLSNTLKS 179 (182)
Q Consensus 166 v~~l~~~i~~~~~~ 179 (182)
++++|++|.+.+..
T Consensus 190 v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 190 VKELFEGIVRQVRL 203 (211)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987753
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=174.19 Aligned_cols=165 Identities=16% Similarity=0.216 Sum_probs=122.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
.+.++|+++|++|+|||||++++.++.+.. ..+|+.... ..+...+ ..+.+|||||++.+...+..+++.+|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 357899999999999999999999887766 555555332 2344444 567799999999999999999999999999
Q ss_pred EEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHH---------hCcccccCCc-eEEEEec
Q 030120 91 VVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEA---------LELHKIKNRQ-WAIFKTC 159 (182)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~S 159 (182)
|+|++++.++.... .|+..+.... .+.|+++|+||+|+.+.....+.... .........+ .+++++|
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 99999999988887 4655554332 37899999999998643111111000 0000111223 3899999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCC
Q 030120 160 AIKGEGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 160 a~~~~~v~~l~~~i~~~~~~~~ 181 (182)
|++|.|++++|+++.+.+.+.+
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHSCCC
T ss_pred CCCccCHHHHHHHHHHHHhccc
Confidence 9999999999999999887653
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-30 Score=175.57 Aligned_cols=164 Identities=16% Similarity=0.229 Sum_probs=118.2
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCe
Q 030120 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 12 ~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
....+.+||+++|++|+|||||++++.++.+.. ..+|+.... ..+... ...+.+|||||++.+...+..+++.+|+
T Consensus 25 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 4gzl_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV 104 (204)
T ss_dssp -----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred hhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence 345778999999999999999999999888766 555554322 233333 3566699999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhC---------cccc-cCCceEEE
Q 030120 88 VIYVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALE---------LHKI-KNRQWAIF 156 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~ 156 (182)
+++|+|++++.++.... .|+..+.... .+.|+++|+||+|+.+.....+...... .... .....+++
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 182 (204)
T 4gzl_A 105 FLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL 182 (204)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEE
Confidence 99999999999998887 5555554332 5799999999999965422111111100 0011 12234699
Q ss_pred EecCCCCCCHHHHHHHHHHHH
Q 030120 157 KTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 157 ~~Sa~~~~~v~~l~~~i~~~~ 177 (182)
++||++|.|++++|++|.+.+
T Consensus 183 ~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 183 ECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp ECCTTTCTTHHHHHHHHHHTT
T ss_pred EeeCCCCCCHHHHHHHHHHHh
Confidence 999999999999999998754
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=176.62 Aligned_cols=164 Identities=18% Similarity=0.246 Sum_probs=115.0
Q ss_pred hhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEE--E---ECCEEEEEEECCCCCCCccch---hhhc
Q 030120 11 SLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETV--Q---YNNIKFQVWDLGGQTSIRPYW---RCYF 82 (182)
Q Consensus 11 ~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~--~---~~~~~~~~~D~~g~~~~~~~~---~~~~ 82 (182)
...+++.+||+++|++|+|||||++++.++.......+.+.....+ . .....+.+|||||++.+.... ..++
T Consensus 14 ~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 93 (196)
T 3llu_A 14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIF 93 (196)
T ss_dssp ------CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHH
T ss_pred CcccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccc
Confidence 3456789999999999999999999888765443322222222222 2 245799999999999987766 7899
Q ss_pred CCCCeEEEEEeCCCc--ccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC----HHHHHHHhCccccc----CCc
Q 030120 83 PNTEAVIYVVDSSDT--DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD----DAAVSEALELHKIK----NRQ 152 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----~~~~~~~~~~~~~~----~~~ 152 (182)
+.+|++++|+|+++. +++.....|+..... ...+.|+++|+||+|+.+... ...+........+. ..+
T Consensus 94 ~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 171 (196)
T 3llu_A 94 RGTGALIYVIDAQDDYMEALTRLHITVSKAYK--VNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLH 171 (196)
T ss_dssp HTCSEEEEEEETTSCCHHHHHHHHHHHHHHHH--HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSC
T ss_pred ccCCEEEEEEECCCchHHHHHHHHHHHHHHHh--cCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCC
Confidence 999999999999997 455555566655532 235799999999999865211 12332222222222 567
Q ss_pred eEEEEecCCCCCCHHHHHHHHHHHH
Q 030120 153 WAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 153 ~~~~~~Sa~~~~~v~~l~~~i~~~~ 177 (182)
++++++||++ .|++++|+.+.+.+
T Consensus 172 ~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 172 LSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred cceEEEEech-hhHHHHHHHHHHHh
Confidence 8999999999 99999999998865
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-30 Score=177.64 Aligned_cols=159 Identities=14% Similarity=0.138 Sum_probs=121.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
.+.++|+++|++|+|||||++++.++.+.. ..+|++... ..+... ...+.+|||||++.+...+..+++.+|++++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il 86 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 86 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence 567999999999999999999999888765 556665433 233343 3689999999999999999999999999999
Q ss_pred EEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCCC----------CHHHHHHHhCcccccCCc-eEEEEe
Q 030120 91 VVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGAL----------DDAAVSEALELHKIKNRQ-WAIFKT 158 (182)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~ 158 (182)
|+|++++.++.... .|+..+.... ++.|+++|+||+|+.+.. ...+..... ...+ .+++++
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~ 159 (212)
T 2j0v_A 87 AFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELR-----KQIGAAAYIEC 159 (212)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHH-----HHHTCSEEEEC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHH-----HHcCCceEEEc
Confidence 99999999998886 5666654332 478999999999986431 111211111 1122 479999
Q ss_pred cCCCCCCHHHHHHHHHHHHhcC
Q 030120 159 CAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 159 Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
||++|.|++++|++|.+.+.+.
T Consensus 160 Sa~~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 160 SSKTQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp CTTTCTTHHHHHHHHHHHHHCC
T ss_pred cCCCCCCHHHHHHHHHHHHhhh
Confidence 9999999999999999987654
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=175.91 Aligned_cols=162 Identities=17% Similarity=0.224 Sum_probs=124.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeE-EEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET-VQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~-~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
....++|+++|++|+|||||+++|.++.+.. ..+|.+..... +... ...+.+|||||++.+...+..+++.+|+++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 3567999999999999999999999988765 55665543332 2333 457899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccc-cCCCeEEEEEeCCCCCCCC-CHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEE-LKGAVALIFANKQDLPGAL-DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|+|++++.++.....|+..+..... ..+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.|++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 159 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVA-----QEWKCAFMETSAKMNYNVK 159 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHH-----HHHTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHH-----HHhCCeEEEEecCCCCCHH
Confidence 99999999888888777765544321 2468999999999997532 222222221 1234579999999999999
Q ss_pred HHHHHHHHHHhcC
Q 030120 168 EGMDWLSNTLKSG 180 (182)
Q Consensus 168 ~l~~~i~~~~~~~ 180 (182)
+++++|.+.+.+.
T Consensus 160 ~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 160 ELFQELLTLETRR 172 (199)
T ss_dssp HHHHHHHHHCSSS
T ss_pred HHHHHHHHHHhhh
Confidence 9999999877543
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-30 Score=173.34 Aligned_cols=160 Identities=16% Similarity=0.168 Sum_probs=116.3
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeE
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
...+.++|+++|++|+|||||++++.+..+.. ..+|+.... ..+...+ ..+.+|||||++.+...+..+++++|++
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF 95 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence 45678999999999999999999999888766 556665333 3344554 4677999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCC--------------CCHHHHHHHhCcccccCCc-
Q 030120 89 IYVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGA--------------LDDAAVSEALELHKIKNRQ- 152 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~- 152 (182)
++|+|++++.++.... .|+..+.... .+.|+++|+||+|+.+. ....+..... ...+
T Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~ 168 (201)
T 2q3h_A 96 LLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLA-----EEIKA 168 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH-----HHHTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHH-----HhcCC
Confidence 9999999999998886 5666654432 47899999999999642 1111111111 1112
Q ss_pred eEEEEecCCCCCCHHHHHHHHHHHHhc
Q 030120 153 WAIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 153 ~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
.+++++||++|.|++++|++|.+.+.+
T Consensus 169 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 169 ASYIECSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 379999999999999999999988764
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=172.79 Aligned_cols=164 Identities=16% Similarity=0.231 Sum_probs=118.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
...++|+++|++|+|||||++++.++.+.. ..+|++... ..+...+ ..+.+|||||++.+...+..+++.+|++++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence 467899999999999999999999988766 555555433 3344444 678999999999999999999999999999
Q ss_pred EEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhC---------cccccCCce-EEEEec
Q 030120 91 VVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALE---------LHKIKNRQW-AIFKTC 159 (182)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~S 159 (182)
|+|++++.++.... .|+..+... .++.|+++|+||+|+.+.....+...... .......+. +++++|
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 103 CFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 99999998888884 455444332 25789999999999965421111111110 000111223 799999
Q ss_pred CCCCCCHHHHHHHHHHHHhcC
Q 030120 160 AIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 160 a~~~~~v~~l~~~i~~~~~~~ 180 (182)
|++|.|+++++++|.+.+.+.
T Consensus 181 A~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999987654
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.97 E-value=5.8e-31 Score=175.83 Aligned_cols=159 Identities=14% Similarity=0.155 Sum_probs=111.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee-EEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
..+.++|+++|++|+|||||++++.++.+.. ..+|++.... .+.. ....+.+|||||++.+...+..+++.+|+++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 3568999999999999999999999888765 4555542221 1222 3456779999999999999999999999999
Q ss_pred EEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCCCC------------HHHHHHHhCcccccCCc-eEE
Q 030120 90 YVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALD------------DAAVSEALELHKIKNRQ-WAI 155 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~------------~~~~~~~~~~~~~~~~~-~~~ 155 (182)
+|+|++++.++.... .|+..+.... .+.|+++|+||+|+.+... ..+.... ....+ .++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~ 157 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEEL-----KKLIGAPAY 157 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHH-----HHHHTCSEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHH-----HHHcCCCEE
Confidence 999999999988887 4655554332 4789999999999864311 1111111 11123 379
Q ss_pred EEecCCCCCCHHHHHHHHHHHHhc
Q 030120 156 FKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 156 ~~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
+++||++|.|++++|++|.+.+.+
T Consensus 158 ~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 158 IECSSKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999988754
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-29 Score=167.59 Aligned_cols=162 Identities=21% Similarity=0.177 Sum_probs=122.1
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccc--cceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTI--GFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~--~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
...+.++|+++|++|+|||||++++.+..+.. ..++. ......+.+.+..+.+|||||++.+...+..++..+|+++
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 34678999999999999999999999988765 33433 4555667778899999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCccc--ccC--CceEEEEecCCCCCC
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHK--IKN--RQWAIFKTCAIKGEG 165 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~Sa~~~~~ 165 (182)
+|+|++++..... ...+..+. ..+.|+++|+||+|+.+. ..+++...+.... ... ..++++++||++|.|
T Consensus 84 ~v~d~~~~~~~~~-~~~l~~~~----~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (178)
T 2lkc_A 84 LVVAADDGVMPQT-VEAINHAK----AANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEG 157 (178)
T ss_dssp EEEETTCCCCHHH-HHHHHHHG----GGSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHH
T ss_pred EEEECCCCCcHHH-HHHHHHHH----hCCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCC
Confidence 9999988543222 22222221 247899999999999764 3334443332211 111 237899999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 030120 166 LFEGMDWLSNTLKSG 180 (182)
Q Consensus 166 v~~l~~~i~~~~~~~ 180 (182)
+++++++|.+.+...
T Consensus 158 v~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 158 LDHLLEMILLVSEME 172 (178)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhh
Confidence 999999999887654
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=177.69 Aligned_cols=160 Identities=18% Similarity=0.224 Sum_probs=95.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC--Cccc-cccccc--ceeeEEEEC----CEEEEEEECCCCCCCccchhhhcCCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG--EVVS-TIPTIG--FNVETVQYN----NIKFQVWDLGGQTSIRPYWRCYFPNT 85 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~--~~~~-~~~t~~--~~~~~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~ 85 (182)
...++|+++|++|+|||||++++.+. .+.. ..+|++ .....+.+. ...+.+|||||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 46789999999999999999999988 6654 556665 444556665 56899999999999999999999999
Q ss_pred CeEEEEEeCCCcccHHHHHHHHHHHHhccc--cCCCeEEEEEeCCCCCC-C--CCHHHHHHHhCcccccCCceEEEEecC
Q 030120 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEE--LKGAVALIFANKQDLPG-A--LDDAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
|++++|+|++++.++.....|+..+..... ..+.|+++|+||+|+.+ . ...++...... ..+++++++||
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa 172 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWAT-----TNTLDFFDVSA 172 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHH-----HTTCEEEECCC
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHH-----HcCCEEEEecc
Confidence 999999999999999999888888765433 24789999999999965 2 22333333222 23468999999
Q ss_pred CC-CCCHHHHHHHHHHHHhc
Q 030120 161 IK-GEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 161 ~~-~~~v~~l~~~i~~~~~~ 179 (182)
++ +.|++++|++|.+.+.+
T Consensus 173 ~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 173 NPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp -------CHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHH
Confidence 99 99999999999987653
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=170.18 Aligned_cols=159 Identities=18% Similarity=0.227 Sum_probs=120.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee-EEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
...++|+++|++|+|||||++++.+..+.. +.+|.+.... .+.+ ....+.+|||||++.+...+..+++.+|++++
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 84 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEE
Confidence 567999999999999999999999988766 5566654332 2333 34688999999999999899999999999999
Q ss_pred EEeCCCcccHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCCCC--------------CCHHHHHHHhCcccccCCceEE
Q 030120 91 VVDSSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLPGA--------------LDDAAVSEALELHKIKNRQWAI 155 (182)
Q Consensus 91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 155 (182)
|+|++++.++... ..|+..+... .++.|+++|+||+|+.+. ...++...... ....+++
T Consensus 85 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~ 158 (184)
T 1m7b_A 85 CFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAK----QIGAATY 158 (184)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH----HHTCSEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHH----HcCCcEE
Confidence 9999999998888 4565555332 257899999999999642 11122111111 1123579
Q ss_pred EEecCC-CCCCHHHHHHHHHHHHhc
Q 030120 156 FKTCAI-KGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 156 ~~~Sa~-~~~~v~~l~~~i~~~~~~ 179 (182)
+++||+ ++.|++++|+.+.+.+..
T Consensus 159 ~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 159 IECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp EECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred EEeeecCCCcCHHHHHHHHHHHHhc
Confidence 999999 689999999999987653
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=178.04 Aligned_cols=164 Identities=13% Similarity=0.200 Sum_probs=104.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce-eeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN-VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
.+.++|+++|++|+|||||++++.++.+.. ..+|+... ...+...+ ..+.+|||||++.+...+..+++.+|++++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 567999999999999999999999888765 45555433 23344443 478999999999999999999999999999
Q ss_pred EEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHH---------hCcccccCCce-EEEEec
Q 030120 91 VVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEA---------LELHKIKNRQW-AIFKTC 159 (182)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~---------~~~~~~~~~~~-~~~~~S 159 (182)
|+|++++.++.... .|+..+.... .+.|+++|+||+|+.+.....+.... .........++ +++++|
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHFC--KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 99999999998886 5655554322 57899999999999654211111100 00011112233 899999
Q ss_pred CCCCCCHHHHHHHHHHHHhcC
Q 030120 160 AIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 160 a~~~~~v~~l~~~i~~~~~~~ 180 (182)
|++|.|++++|++|.+.+.+.
T Consensus 190 A~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp TTTTBSHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999988755
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-32 Score=183.28 Aligned_cols=162 Identities=22% Similarity=0.332 Sum_probs=118.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccc--ceeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
++.+||+++|++|+|||||+++|.+..+.. ..++.+ .....+.+.+ ..+.+|||||++.+...+..+++.+|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 567999999999999999999999988766 445544 4455556655 67999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.... ............+++++++||++|.|++++
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~v---~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l 186 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVV---DYTTAKEFADSLGIPFLETSAKNATNVEQS 186 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHSCC--CCSEEEEC-CCSSCC--CCC---CSCC-CHHHHTTTCCBCCCCC---HHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-cCCCCEEEEEECccCCccccC---CHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 9999999999999988887775432 357899999999999643211 001111122234567999999999999999
Q ss_pred HHHHHHHHhcC
Q 030120 170 MDWLSNTLKSG 180 (182)
Q Consensus 170 ~~~i~~~~~~~ 180 (182)
|++|.+.+.+.
T Consensus 187 ~~~l~~~l~~~ 197 (199)
T 3l0i_B 187 FMTMAAEIKKR 197 (199)
T ss_dssp HHHHTTTTTTT
T ss_pred HHHHHHHHHHh
Confidence 99998877643
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-29 Score=171.16 Aligned_cols=160 Identities=18% Similarity=0.221 Sum_probs=120.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee-EEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
....+||+++|++|+|||||+++|.+..+.. +.+|.+.... .+.+ ....+.+|||||++.+...+..+++.+|+++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 104 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 104 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence 3578999999999999999999999988766 5566654432 2333 3478999999999999999999999999999
Q ss_pred EEEeCCCcccHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCCCC--------------CCHHHHHHHhCcccccCCceE
Q 030120 90 YVVDSSDTDRIQTA-KEEFHAILEEEELKGAVALIFANKQDLPGA--------------LDDAAVSEALELHKIKNRQWA 154 (182)
Q Consensus 90 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 154 (182)
+|+|++++.++... ..|+..+.... .+.|+++|+||+|+.+. ...++...... ....++
T Consensus 105 lv~D~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~ 178 (205)
T 1gwn_A 105 ICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAK----QIGAAT 178 (205)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH----HHTCSE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHH----HcCCCE
Confidence 99999999998888 56666554332 47899999999999642 11111111111 111257
Q ss_pred EEEecCC-CCCCHHHHHHHHHHHHhc
Q 030120 155 IFKTCAI-KGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 155 ~~~~Sa~-~~~~v~~l~~~i~~~~~~ 179 (182)
++++||+ ++.|++++|+.+.+.+..
T Consensus 179 ~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 179 YIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp EEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 9999999 689999999999987653
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.3e-30 Score=171.83 Aligned_cols=160 Identities=14% Similarity=0.107 Sum_probs=113.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC--ccccccccc--ceeeEEEECCE--EEEEEECCCCCC-CccchhhhcCCCC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGE--VVSTIPTIG--FNVETVQYNNI--KFQVWDLGGQTS-IRPYWRCYFPNTE 86 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~--~~~~~~t~~--~~~~~~~~~~~--~~~~~D~~g~~~-~~~~~~~~~~~~d 86 (182)
....+||+++|++|+|||||++++.+.. +....++++ .....+.+++. .+.+|||+|++. .......+++.+|
T Consensus 3 ~~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 3 GMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 3567899999999999999999998643 344333343 23344555554 567899999876 4455677788899
Q ss_pred eEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCC
Q 030120 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
++++|||+++..++.....|+..+.......+.|+++|+||+|+.+.. ...+.. . .+...+++++++||++|.
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~-~----~a~~~~~~~~e~SA~~g~ 157 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGR-A----XAVVFDXKFIETSAAVQH 157 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHH-H----HHHHTTCEEEECBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHH-H----HHHHhCCceEEeccccCC
Confidence 999999999999999988887776554333578999999999985421 121111 1 112234679999999999
Q ss_pred CHHHHHHHHHHHHh
Q 030120 165 GLFEGMDWLSNTLK 178 (182)
Q Consensus 165 ~v~~l~~~i~~~~~ 178 (182)
|++++|+.+.+.+.
T Consensus 158 ~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 158 NVKELFEGIVRQVR 171 (192)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998764
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-30 Score=172.53 Aligned_cols=162 Identities=15% Similarity=0.240 Sum_probs=114.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC--Cccc-ccccccceeeEEEE-------CCEEEEEEECCCCCCCccchhhhcCCCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMG--EVVS-TIPTIGFNVETVQY-------NNIKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~--~~~~-~~~t~~~~~~~~~~-------~~~~~~~~D~~g~~~~~~~~~~~~~~~d 86 (182)
.+||+++|++|+|||||++++.+. .+.. ..+|.+........ ....+.+|||+|++.+...+..+++.++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999985 3444 56677665544332 3568999999999988888888889999
Q ss_pred eEEEEEeCCCc-ccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCce----EEEEecCC
Q 030120 87 AVIYVVDSSDT-DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQW----AIFKTCAI 161 (182)
Q Consensus 87 ~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Sa~ 161 (182)
++++|+|++++ .++.....|+..+.... ++.|+++|+||+|+.+...................++ +++++||+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence 99999999988 46788888887775432 4789999999999864311111111111112222233 49999999
Q ss_pred CCC-CHHHHHHHHHHHHhcC
Q 030120 162 KGE-GLFEGMDWLSNTLKSG 180 (182)
Q Consensus 162 ~~~-~v~~l~~~i~~~~~~~ 180 (182)
++. +++++++.|.+.+.+.
T Consensus 160 ~~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 160 EESDALAKLRKTIINESLNF 179 (184)
T ss_dssp SCCHHHHHHHHHHHHHHHCC
T ss_pred cCchhHHHHHHHHHHHHhcc
Confidence 997 9999999999887754
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-28 Score=168.80 Aligned_cols=162 Identities=15% Similarity=0.132 Sum_probs=111.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cc--ccccceeeEEEECCEEEEEEECCCCCCC---------ccchhhhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TI--PTIGFNVETVQYNNIKFQVWDLGGQTSI---------RPYWRCYF 82 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~--~t~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~ 82 (182)
.+.++|+++|++|+|||||+++|++..+.. .. .|.......+......+.+|||||+... ...+..++
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 106 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALA 106 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhh
Confidence 578999999999999999999999988753 22 2344555556667899999999998421 11233456
Q ss_pred CCCCeEEEEEeCCCcccHH--HHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH-HHHHHHhCcccccC--CceEEEE
Q 030120 83 PNTEAVIYVVDSSDTDRIQ--TAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKN--RQWAIFK 157 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~ 157 (182)
..+|++++|+|++++.++. ....|+..+... ..+.|+++|+||+|+.+.... .+...... ..... ..+++++
T Consensus 107 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 183 (228)
T 2qu8_A 107 HINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIK-QILDNVKNPIKFSS 183 (228)
T ss_dssp TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHH-HHHHHCCSCEEEEE
T ss_pred ccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHH-HHHHhcCCCceEEE
Confidence 8889999999999987754 223444444332 237899999999999654221 11111111 11112 2378999
Q ss_pred ecCCCCCCHHHHHHHHHHHHhc
Q 030120 158 TCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 158 ~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
+||++|.|++++|++|.+.+.+
T Consensus 184 ~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 184 FSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999987754
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-29 Score=168.20 Aligned_cols=162 Identities=14% Similarity=0.122 Sum_probs=108.6
Q ss_pred hhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc--eeeEEEECCEEEEEEECCC----------CCCCccc
Q 030120 11 SLFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQYNNIKFQVWDLGG----------QTSIRPY 77 (182)
Q Consensus 11 ~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~~~~~~~D~~g----------~~~~~~~ 77 (182)
..+..+.++|+++|++|+|||||++++.++.+.. ..++.+. .......+ .++.+||||| ++.+...
T Consensus 17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 95 (195)
T 1svi_A 17 QYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-DELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp GSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-TTEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred hCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC-CcEEEEECCCCCccccCHHHHHHHHHH
Confidence 3455678999999999999999999999987443 3333332 22223333 3799999999 4445555
Q ss_pred hhhhcCCC---CeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceE
Q 030120 78 WRCYFPNT---EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWA 154 (182)
Q Consensus 78 ~~~~~~~~---d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (182)
+..+++.+ |++++|+|++++.+..... +...+.. .+.|+++|+||+|+.+.....................+
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 170 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDE 170 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSE
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCc
Confidence 66666655 9999999999887665432 2222222 47899999999999765333322222222122335678
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHh
Q 030120 155 IFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 155 ~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
++++||++|.|+++++++|.+.+.
T Consensus 171 ~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 171 LILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHT
T ss_pred eEEEEccCCCCHHHHHHHHHHHhc
Confidence 999999999999999999998764
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-28 Score=162.24 Aligned_cols=153 Identities=20% Similarity=0.272 Sum_probs=111.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc--cccc--cccceeeEEEECCEEEEEEECCCCCCCccc--------hhhhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVV--STIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPY--------WRCYF 82 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~ 82 (182)
.+..+|+++|++|+|||||++++.+..+. ...+ |.+.....+.+.+..+.+|||||++..... ...++
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 35689999999999999999999987643 2222 333455667778888999999998764321 12357
Q ss_pred CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCC
Q 030120 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
+.+|++++|+|++++.++. ...|+..+... ...+.|+++|+||+|+.+.. .......+.+++++||++
T Consensus 82 ~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~----------~~~~~~~~~~~~~~SA~~ 149 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVD-PAEIWPEFIAR-LPAKLPITVVRNKADITGET----------LGMSEVNGHALIRLSART 149 (172)
T ss_dssp HTCSEEEEEEETTTCCCCS-HHHHCHHHHHH-SCTTCCEEEEEECHHHHCCC----------CEEEEETTEEEEECCTTT
T ss_pred HhCCEEEEEEECCCCCCHH-HHHHHHHHHHh-cccCCCEEEEEECccCCcch----------hhhhhccCCceEEEeCCC
Confidence 8999999999999988765 34565555433 22468999999999985321 111222457899999999
Q ss_pred CCCHHHHHHHHHHHHhc
Q 030120 163 GEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~~~ 179 (182)
|.|++++|++|.+.+..
T Consensus 150 g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 150 GEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp CTTHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHhhh
Confidence 99999999999987653
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.7e-31 Score=179.08 Aligned_cols=164 Identities=17% Similarity=0.247 Sum_probs=120.5
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCe
Q 030120 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEA 87 (182)
Q Consensus 12 ~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 87 (182)
.+..+.++|+++|++|+|||||++++.++.+.. ..+|+.... ..+.. ....+.+|||||++.+...+..+++++|+
T Consensus 25 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 3th5_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDV 104 (204)
Confidence 445788999999999999999999999887765 444444222 22222 34567799999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCCCCHH---------HHHHHhCcccccCCce-EEE
Q 030120 88 VIYVVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDDA---------AVSEALELHKIKNRQW-AIF 156 (182)
Q Consensus 88 ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~---------~~~~~~~~~~~~~~~~-~~~ 156 (182)
+++|+|++++.++.... .|+..+.... .+.|+++|+||+|+.+..... .+............++ +++
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 182 (204)
T 3th5_A 105 FLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL 182 (204)
Confidence 99999999999888876 4554443321 378999999999996532111 1111111222233344 799
Q ss_pred EecCCCCCCHHHHHHHHHHHH
Q 030120 157 KTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 157 ~~Sa~~~~~v~~l~~~i~~~~ 177 (182)
++||++|.|++++|+.|.+.+
T Consensus 183 ~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 183 ECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999999999998764
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=175.95 Aligned_cols=157 Identities=18% Similarity=0.181 Sum_probs=117.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc----ccccccceeeEEEECCEEEEEEECCCCCCCcc---chhhhcCCCCeEEEE
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP---YWRCYFPNTEAVIYV 91 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~d~ii~v 91 (182)
||+++|+.|+|||||++++.++.... ..||++.....+. ...++++|||||++++.. .+..++++++++|+|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV 79 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV 79 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence 68999999999999999987765443 4577777766552 458899999999999974 368899999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhc--cccCCCeEEEEEeCCCCCCCCC----HHHHHHHhCcccccC----CceEEEEecCC
Q 030120 92 VDSSDTDRIQTAKEEFHAILEE--EELKGAVALIFANKQDLPGALD----DAAVSEALELHKIKN----RQWAIFKTCAI 161 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~--~~~~~~~iivv~nK~D~~~~~~----~~~~~~~~~~~~~~~----~~~~~~~~Sa~ 161 (182)
+|+++. +.....|+..++.. ...++.|+++++||+|+.+... .+++....+...+.. .++++++|||+
T Consensus 80 ~Ditd~--~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAk 157 (331)
T 3r7w_B 80 IDSQDE--YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIF 157 (331)
T ss_dssp CCCSSC--TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSS
T ss_pred EECCch--HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccC
Confidence 999987 44445555444332 1235799999999999975422 134444444333332 57899999999
Q ss_pred CCCCHHHHHHHHHHHHhc
Q 030120 162 KGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 162 ~~~~v~~l~~~i~~~~~~ 179 (182)
+ .+|.++|..+.+.+.+
T Consensus 158 d-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 158 D-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp S-SHHHHHHHHHHTTSST
T ss_pred C-CcHHHHHHHHHHHHHh
Confidence 8 5899999999876654
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-28 Score=159.17 Aligned_cols=148 Identities=22% Similarity=0.265 Sum_probs=106.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc--ccc--cccceeeEEEECCEEEEEEECCCCCCC-------ccchhhhcCCCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQYNNIKFQVWDLGGQTSI-------RPYWRCYFPNTE 86 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~~d 86 (182)
.+|+++|++|+|||||++++.+..+.. ..+ +.......+...+..+.+|||||+... ...+..+++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 589999999999999999999887542 222 333555666678889999999998873 344567889999
Q ss_pred eEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCce-EEEEecCCCCCC
Q 030120 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQW-AIFKTCAIKGEG 165 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 165 (182)
++++|+|++++.+. ...++..++.. .+.|+++|+||+|+.+.. .+ .. ... ..++ +++++||++|.|
T Consensus 82 ~~i~v~d~~~~~~~--~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~--~~----~~-~~~-~~~~~~~~~~Sa~~~~g 148 (161)
T 2dyk_A 82 VVLFAVDGRAELTQ--ADYEVAEYLRR---KGKPVILVATKVDDPKHE--LY----LG-PLY-GLGFGDPIPTSSEHARG 148 (161)
T ss_dssp EEEEEEESSSCCCH--HHHHHHHHHHH---HTCCEEEEEECCCSGGGG--GG----CG-GGG-GGSSCSCEECBTTTTBS
T ss_pred EEEEEEECCCcccH--hHHHHHHHHHh---cCCCEEEEEECcccccch--Hh----HH-HHH-hCCCCCeEEEecccCCC
Confidence 99999999987443 33344444443 468999999999986431 11 11 111 1223 689999999999
Q ss_pred HHHHHHHHHHHHh
Q 030120 166 LFEGMDWLSNTLK 178 (182)
Q Consensus 166 v~~l~~~i~~~~~ 178 (182)
++++|+++.+.++
T Consensus 149 v~~l~~~l~~~l~ 161 (161)
T 2dyk_A 149 LEELLEAIWERLP 161 (161)
T ss_dssp HHHHHHHHHHHCC
T ss_pred hHHHHHHHHHhCc
Confidence 9999999998763
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-29 Score=167.51 Aligned_cols=164 Identities=21% Similarity=0.203 Sum_probs=111.9
Q ss_pred hhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeE-EEECCEEEEEEECCC----------CCCCccchh
Q 030120 11 SLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVET-VQYNNIKFQVWDLGG----------QTSIRPYWR 79 (182)
Q Consensus 11 ~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~D~~g----------~~~~~~~~~ 79 (182)
..+....++|+++|++|+|||||++++.+..+....++.+..... ....+.++.+||||| ++.+...+.
T Consensus 17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 96 (195)
T 3pqc_A 17 DYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVE 96 (195)
T ss_dssp CCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred hCCCCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHH
Confidence 344567889999999999999999999998865544544433222 122345788999999 334445555
Q ss_pred hhcCCC---CeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEE
Q 030120 80 CYFPNT---EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIF 156 (182)
Q Consensus 80 ~~~~~~---d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (182)
.+++.+ |++++|+|+.+..+.... .+...+.. .+.|+++|+||+|+.+........+...........++++
T Consensus 97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (195)
T 3pqc_A 97 DYFKNRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKS---LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTII 171 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEE
T ss_pred HHHhcCcCceEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceE
Confidence 555544 999999999876443222 22222222 2689999999999975544433333333222223456799
Q ss_pred EecCCCCCCHHHHHHHHHHHHhc
Q 030120 157 KTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 157 ~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
++||++|.|++++|++|.+.+.+
T Consensus 172 ~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 172 PTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHC-
T ss_pred EEecCCCCCHHHHHHHHHHHhhc
Confidence 99999999999999999998764
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-28 Score=174.24 Aligned_cols=162 Identities=17% Similarity=0.202 Sum_probs=121.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC--ccc--ccccccceeeEEEE-CCEEEEEEECCCCCCC-----ccchhhhcCCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE--VVS--TIPTIGFNVETVQY-NNIKFQVWDLGGQTSI-----RPYWRCYFPNT 85 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~--~~~--~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~-----~~~~~~~~~~~ 85 (182)
..+||+++|++|+|||||+++++++. +.. ..+|.+.....+.+ ++..+.+|||||++.+ ...+..+++++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 56899999999999999999998873 332 66778877777776 6789999999999987 67788889999
Q ss_pred CeEEEEEeCCCcccHHHHHHHHHHHHhc-cccCCCeEEEEEeCCCCCCCCCHHH---HHHHhCcccccCC---ceEEEEe
Q 030120 86 EAVIYVVDSSDTDRIQTAKEEFHAILEE-EELKGAVALIFANKQDLPGALDDAA---VSEALELHKIKNR---QWAIFKT 158 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~iivv~nK~D~~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~ 158 (182)
|++++|+|++++.++.....|...+... ...++.|+++|+||+|+.+.....+ +............ .++++++
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~t 161 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPT 161 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEEC
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEe
Confidence 9999999999999988886664433221 1125799999999999975211210 1111111222222 4789999
Q ss_pred cCCCCCCHHHHHHHHHHHHh
Q 030120 159 CAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 159 Sa~~~~~v~~l~~~i~~~~~ 178 (182)
||++ .++.++|..+.+.+.
T Consensus 162 Sa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 162 SIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp CTTS-SHHHHHHHHHHHTTC
T ss_pred eecC-ChHHHHHHHHHHHHc
Confidence 9999 889999988877543
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-27 Score=170.86 Aligned_cols=162 Identities=17% Similarity=0.140 Sum_probs=120.5
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc--ccc--cccceeeEEEEC-CEEEEEEECCCCCCCc----------cc
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQYN-NIKFQVWDLGGQTSIR----------PY 77 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~-~~~~~~~D~~g~~~~~----------~~ 77 (182)
+++..-.|+++|.+|+|||||+|+|++..+.. ..+ |........... +..+.+|||||+.... ..
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~ 85 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEI 85 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHH
Confidence 45677789999999999999999999988754 222 333344455566 8999999999987654 45
Q ss_pred hhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC-CCCCHHHHHHHhCcccccCCceEEE
Q 030120 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP-GALDDAAVSEALELHKIKNRQWAIF 156 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (182)
+..+++.+|++++|+|++++.+......|+..+.. .+.|+++|+||+|+. +.....+....+.... ....+++
T Consensus 86 ~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~--~~~~~i~ 159 (308)
T 3iev_A 86 AKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH--PELTEIV 159 (308)
T ss_dssp HHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC--TTCCCEE
T ss_pred HHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhc--cCCCeEE
Confidence 56778899999999999998887776655555433 368999999999996 3333333333222111 1345699
Q ss_pred EecCCCCCCHHHHHHHHHHHHhcC
Q 030120 157 KTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 157 ~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
++||++|.|++++++.+.+.+++.
T Consensus 160 ~vSA~~g~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 160 PISALKGANLDELVKTILKYLPEG 183 (308)
T ss_dssp ECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred EEeCCCCCCHHHHHHHHHHhCccC
Confidence 999999999999999999988764
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.9e-27 Score=153.92 Aligned_cols=147 Identities=27% Similarity=0.290 Sum_probs=105.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccc--cceeeEEEECCEEEEEEECCCCCCCc------cchhhhcC--CC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTI--GFNVETVQYNNIKFQVWDLGGQTSIR------PYWRCYFP--NT 85 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~--~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~--~~ 85 (182)
.++|+++|++|+|||||++++.+..+.. ..+++ ......+.+.+..+.+|||||++.+. .....+++ .+
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 82 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKP 82 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCC
Confidence 5789999999999999999999876533 34433 34455666778999999999998764 23345554 79
Q ss_pred CeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC----CHHHHHHHhCcccccCCceEEEEecCC
Q 030120 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL----DDAAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
|++++|+|+++.+ ....|+..+.. .+.|+++|+||+|+.... ..+++... .+++++++||+
T Consensus 83 ~~~i~v~D~~~~~---~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~--------~~~~~~~~SA~ 147 (165)
T 2wji_A 83 DLVVNIVDATALE---RNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKI--------LGVKVVPLSAA 147 (165)
T ss_dssp SEEEEEEETTCHH---HHHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHH--------HTSCEEECBGG
T ss_pred CEEEEEecCCchh---HhHHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHH--------hCCCEEEEEcC
Confidence 9999999998753 33445555533 368999999999984211 11222221 23569999999
Q ss_pred CCCCHHHHHHHHHHHHh
Q 030120 162 KGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 162 ~~~~v~~l~~~i~~~~~ 178 (182)
+|.|++++|+++.+.+.
T Consensus 148 ~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 148 KKMGIEELKKAISIAVK 164 (165)
T ss_dssp GTBSHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 99999999999998764
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.5e-27 Score=169.23 Aligned_cols=164 Identities=16% Similarity=0.197 Sum_probs=120.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce-eeEEEECCE--EEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN-VETVQYNNI--KFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~~--~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
...++|+++|.+|+|||||++++.++.+.. ..+|+... ...+...+. .+.+|||||++.+...+..+++.+|++++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 567999999999999999999999888765 55555433 233444544 55599999999999999999999999999
Q ss_pred EEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHh---------CcccccCCc-eEEEEec
Q 030120 91 VVDSSDTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEAL---------ELHKIKNRQ-WAIFKTC 159 (182)
Q Consensus 91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~~S 159 (182)
|+|++++.++.... .|+..+.... .+.|+++|+||+|+.+.....+..... ........+ .+++++|
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 310 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 310 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEec
Confidence 99999999988887 4555553322 378999999999985431111100000 000111223 3899999
Q ss_pred CCCCCCHHHHHHHHHHHHhcC
Q 030120 160 AIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 160 a~~~~~v~~l~~~i~~~~~~~ 180 (182)
|++|.|++++|+.|.+.+...
T Consensus 311 a~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 311 ALTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp TTTCTTHHHHHHHHHHHHHC-
T ss_pred CCCCcCHHHHHHHHHHHHhcC
Confidence 999999999999999987654
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-28 Score=167.07 Aligned_cols=166 Identities=16% Similarity=0.111 Sum_probs=109.6
Q ss_pred hhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCc-cc--cccccc--ceeeEEE-ECCEEEEEEECCCCCCC---------
Q 030120 10 SSLFGNKEARILVLGLDNAGKTTILYRLQMGEV-VS--TIPTIG--FNVETVQ-YNNIKFQVWDLGGQTSI--------- 74 (182)
Q Consensus 10 ~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~-~~--~~~t~~--~~~~~~~-~~~~~~~~~D~~g~~~~--------- 74 (182)
...+..+.++|+++|.+|+|||||+|+|++... .. ..+.+. .....+. ..+..+.+|||||....
T Consensus 22 ~~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~ 101 (223)
T 4dhe_A 22 RDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAH 101 (223)
T ss_dssp GGSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHH
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHH
Confidence 344556789999999999999999999999873 22 223222 2233332 24688999999995432
Q ss_pred -ccchhhhcCC---CCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCccccc-
Q 030120 75 -RPYWRCYFPN---TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIK- 149 (182)
Q Consensus 75 -~~~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~- 149 (182)
...+..++.. +|++++|+|+.++.+ .....+...+.. .+.|+++|+||+|+.+..........+......
T Consensus 102 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~--~~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~ 176 (223)
T 4dhe_A 102 WEQLLSSYLQTRPQLCGMILMMDARRPLT--ELDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAY 176 (223)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEETTSCCC--HHHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcCcCEEEEEEeCCCCCC--HHHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhh
Confidence 3333444443 788999999998644 222223333333 468999999999997542222222222111111
Q ss_pred -----CCceEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030120 150 -----NRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 150 -----~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
...++++++||++|.|+++++++|.+.++..
T Consensus 177 ~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 177 RDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp HHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred hhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 3667899999999999999999999988654
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-27 Score=168.18 Aligned_cols=157 Identities=17% Similarity=0.087 Sum_probs=113.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc--ccccc--cceeeEEEECCEEEEEEECCCCCC--------CccchhhhcC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTI--GFNVETVQYNNIKFQVWDLGGQTS--------IRPYWRCYFP 83 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t~--~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~ 83 (182)
+..+|+++|.+|+|||||+|++++..+.. ..+.+ ..........+.++.+|||||... +......+++
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~ 85 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA 85 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHh
Confidence 45679999999999999999999988754 33322 223334455789999999999876 3445567889
Q ss_pred CCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCC
Q 030120 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
.+|++++|+|++++.+.. ..|+...+.... .+.|+++|+||+|+.+... .+.+..... ....+++++||++|
T Consensus 86 ~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~--~~~~~~~~~---~~~~~~~~iSA~~g 157 (301)
T 1wf3_A 86 DVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPE--EAMKAYHEL---LPEAEPRMLSALDE 157 (301)
T ss_dssp SCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHH--HHHHHHHHT---STTSEEEECCTTCH
T ss_pred cCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchH--HHHHHHHHh---cCcCcEEEEeCCCC
Confidence 999999999999875433 345544444321 4789999999999965322 122222211 23357999999999
Q ss_pred CCHHHHHHHHHHHHhcC
Q 030120 164 EGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 164 ~~v~~l~~~i~~~~~~~ 180 (182)
.|++++++.+.+.+++.
T Consensus 158 ~gv~~l~~~l~~~l~~~ 174 (301)
T 1wf3_A 158 RQVAELKADLLALMPEG 174 (301)
T ss_dssp HHHHHHHHHHHTTCCBC
T ss_pred CCHHHHHHHHHHhcccC
Confidence 99999999999877543
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-28 Score=164.40 Aligned_cols=160 Identities=16% Similarity=0.179 Sum_probs=108.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEECCEEEEEEECCC-----------CCCCccchhhhcCC-
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGG-----------QTSIRPYWRCYFPN- 84 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~~~~~~~- 84 (182)
++|+++|++|+|||||++++.+..+.. ..++.+.....+.+. .+.+||||| ++.+...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 79 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence 689999999999999999999988765 556666555555555 789999999 34445555566665
Q ss_pred CCeEEEEEeCCCcccHHHH-HHHHHH--------HHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccC--Cce
Q 030120 85 TEAVIYVVDSSDTDRIQTA-KEEFHA--------ILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKN--RQW 153 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~-~~~~~~--------~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~ 153 (182)
++++++|+++.+..++... ..|... +.......+.|+++|+||+|+.+.. ............... ...
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~ 158 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEVPLSEIDK 158 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTCCGGGHHH
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhhhhhccCC
Confidence 6666666666666666655 333321 2222223579999999999997543 212222111111100 123
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030120 154 AIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 154 ~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
+++++||++|.|++++|++|.+.+.+.
T Consensus 159 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 159 VFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp HEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred cEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 589999999999999999999988765
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-27 Score=159.43 Aligned_cols=158 Identities=19% Similarity=0.315 Sum_probs=120.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccc--ceeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
+..++++++|++|+|||||++++.+..+.. ..+|.+ +....+.+.+ ..+.+||++|++.+...+..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 356899999999999999999999988765 556554 3345566655 46788999999988888888889999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|+|+.+..++.....|+..+... ...+.|+++++||+|+.+.. ...+.... ....++.++++||+++.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l-----~~~~~~~~~d~Sal~~~~i~ 156 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAF-----AEKNNLSFIETSALDSTNVE 156 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHH-----HHHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHH-----HHHcCCeEEEEeCCCCCCHH
Confidence 999999998888777777665432 22468999999999996422 22222221 12345679999999999999
Q ss_pred HHHHHHHHHHh
Q 030120 168 EGMDWLSNTLK 178 (182)
Q Consensus 168 ~l~~~i~~~~~ 178 (182)
++++.|.+.+.
T Consensus 157 ~l~~~l~~~~~ 167 (199)
T 2f9l_A 157 EAFKNILTEIY 167 (199)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988765
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=167.53 Aligned_cols=161 Identities=11% Similarity=0.092 Sum_probs=113.8
Q ss_pred CCCccEEEEEcCC---------CCCHHHHHHHHhcC---Cccc-ccccc-cce--eeE----------------EEECCE
Q 030120 14 GNKEARILVLGLD---------NAGKTTILYRLQMG---EVVS-TIPTI-GFN--VET----------------VQYNNI 61 (182)
Q Consensus 14 ~~~~~~v~i~G~~---------~~GKssl~~~l~~~---~~~~-~~~t~-~~~--~~~----------------~~~~~~ 61 (182)
..+.+||+++|.+ |+|||||+++|.++ .+.. ..+|+ +.. ... +.....
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 4677999999999 99999999999984 4433 44443 211 111 122457
Q ss_pred EEEEEE-----------------------CCCCCCCccchhhhcC---------------------CCCeEEEEEeCCCc
Q 030120 62 KFQVWD-----------------------LGGQTSIRPYWRCYFP---------------------NTEAVIYVVDSSDT 97 (182)
Q Consensus 62 ~~~~~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~ii~v~d~~~~ 97 (182)
.+.+|| ++|++.+...+..++. ++|++++|+|++++
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~ 175 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG 175 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence 889999 6667777777777776 79999999999998
Q ss_pred --ccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHH
Q 030120 98 --DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 98 --~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 175 (182)
.++.....|+..+.......+.|+++|+||+|+.+. ..+.+..... ....+++++++||++|.|++++|++|.+
T Consensus 176 ~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~---~~v~~~~~~~-~~~~~~~~~e~SAk~g~gv~elf~~l~~ 251 (255)
T 3c5h_A 176 MNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVE---RYIRDAHTFA-LSKKNLQVVETSARSNVNVDLAFSTLVQ 251 (255)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCH---HHHHHHHHHH-HTSSSCCEEECBTTTTBSHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccccc---HHHHHHHHHH-HhcCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 899999988888765433357999999999998542 2222111111 1123567999999999999999999998
Q ss_pred HHh
Q 030120 176 TLK 178 (182)
Q Consensus 176 ~~~ 178 (182)
.+.
T Consensus 252 ~l~ 254 (255)
T 3c5h_A 252 LID 254 (255)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.94 E-value=8e-27 Score=163.66 Aligned_cols=149 Identities=20% Similarity=0.224 Sum_probs=110.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccc--ceeeEEEECCEEEEEEECCCCCCCccc------hhhhc--C
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNNIKFQVWDLGGQTSIRPY------WRCYF--P 83 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~ 83 (182)
.+.++|+++|++|+|||||+|+|.+..+.. ..|+++ .....+...+..+.+|||||+..+... ...++ .
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 457899999999999999999999877643 444444 444455667899999999999877643 24444 6
Q ss_pred CCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC----CHHHHHHHhCcccccCCceEEEEec
Q 030120 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL----DDAAVSEALELHKIKNRQWAIFKTC 159 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
.+|++++|+|+++.++. ..|+..+.. .+.|+++|+||+|+.+.. ....+... .+++++++|
T Consensus 83 ~~d~ii~V~D~t~~~~~---~~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~--------lg~~vi~~S 147 (258)
T 3a1s_A 83 DADLVILVADSVNPEQS---LYLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKH--------LGIPVVFTS 147 (258)
T ss_dssp CCSEEEEEEETTSCHHH---HHHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHH--------HCSCEEECC
T ss_pred CCCEEEEEeCCCchhhH---HHHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHH--------cCCCEEEEE
Confidence 89999999999987543 335555543 378999999999984321 12222222 235799999
Q ss_pred CCCCCCHHHHHHHHHHHHh
Q 030120 160 AIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 160 a~~~~~v~~l~~~i~~~~~ 178 (182)
|++|.|++++++.+.+.+.
T Consensus 148 A~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 148 SVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred eeCCcCHHHHHHHHHHHhh
Confidence 9999999999999998765
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.3e-26 Score=153.08 Aligned_cols=157 Identities=17% Similarity=0.277 Sum_probs=120.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc--eeeEEEECCE--EEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQYNNI--KFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~~--~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
+..++++++|++|+|||||++++.+..+.. ..+|.+. ....+.+.+. .+.+||++|++.+...+..+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 456899999999999999999999988765 5666654 3455666654 4567999999999888888999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|+|..+..++.....|+..+... ...+.|+++++||+|+.+.. ........ ....++.++++||+++.|++
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l-----~~~~~~~~ld~Sald~~~v~ 180 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAF-----AEKNGLSFIETSALDSTNVE 180 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHH-----HHHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHH-----HHHcCCEEEEEeCCCCCCHH
Confidence 999999988877777776655332 22468999999999986421 22222211 12345679999999999999
Q ss_pred HHHHHHHHHH
Q 030120 168 EGMDWLSNTL 177 (182)
Q Consensus 168 ~l~~~i~~~~ 177 (182)
++++.|.+.+
T Consensus 181 ~l~~~l~~~i 190 (191)
T 1oix_A 181 AAFQTILTEI 190 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998765
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-27 Score=166.29 Aligned_cols=144 Identities=18% Similarity=0.173 Sum_probs=106.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-cccccc--ceeeEEEECCEEEEEEECCCCCCCcc----------chhhhc--
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNNIKFQVWDLGGQTSIRP----------YWRCYF-- 82 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~~~~-- 82 (182)
.+|+++|++|+|||||+|+|.+..... ..|+++ .....+.+.+..+.+|||||+..+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 379999999999999999999887543 445444 45566677888999999999987764 345566
Q ss_pred CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC----CHHHHHHHhCcccccCCceEEEEe
Q 030120 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL----DDAAVSEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
..+|++++|+|+++.++... +...+. . .+.|+++|+||+|+.+.. ....+... .+++++++
T Consensus 82 ~~~d~vi~VvDas~~~~~~~---l~~~l~-~---~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~--------lg~~vi~~ 146 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHLY---LTSQLF-E---LGKPVVVALNMMDIAEHRGISIDTEKLESL--------LGCSVIPI 146 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHHH---HHHHHT-T---SCSCEEEEEECHHHHHHTTCEECHHHHHHH--------HCSCEEEC
T ss_pred CCCCEEEEEeeCCCchhHHH---HHHHHH-H---cCCCEEEEEEChhcCCcCCcHHHHHHHHHH--------cCCCEEEE
Confidence 89999999999998644332 222222 2 378999999999984321 12222222 24579999
Q ss_pred cCCCCCCHHHHHHHHHHH
Q 030120 159 CAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 159 Sa~~~~~v~~l~~~i~~~ 176 (182)
||++|.|++++++++.+.
T Consensus 147 SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 147 QAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp BGGGTBSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999999875
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-26 Score=174.15 Aligned_cols=160 Identities=18% Similarity=0.134 Sum_probs=114.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc--cccc--cccceeeEEEECCEEEEEEECCCCCC----------Cccch-h
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVV--STIP--TIGFNVETVQYNNIKFQVWDLGGQTS----------IRPYW-R 79 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~-~ 79 (182)
+..++|+++|.+|+|||||+|++++.... ...+ |.+.....+.+.+..+.+|||||+.. +.... .
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 252 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 252 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHH
Confidence 35689999999999999999999998764 2333 33344556777888999999999732 22222 2
Q ss_pred hhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--HHHHHHHhCcccccCCceEEEE
Q 030120 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFK 157 (182)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
.+++.+|++++|+|++++.+.+.. .|+..+.. .+.|+++|+||+|+.+... .+++.+.+..........++++
T Consensus 253 ~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 327 (436)
T 2hjg_A 253 KAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 327 (436)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 467889999999999998877664 35444432 4799999999999975433 2334333333333334568999
Q ss_pred ecCCCCCCHHHHHHHHHHHHhc
Q 030120 158 TCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 158 ~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
+||++|.|++++|+.+.+.+..
T Consensus 328 ~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 328 MSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999887653
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.1e-26 Score=151.37 Aligned_cols=151 Identities=27% Similarity=0.290 Sum_probs=111.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccc--ceeeEEEECCEEEEEEECCCCCCCc------cchhhhcC--
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNNIKFQVWDLGGQTSIR------PYWRCYFP-- 83 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~-- 83 (182)
-+.++|+++|++|+|||||++++.+..+.. ..++++ .....+.+.+..+.+|||||++.+. ..+..++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 84 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINE 84 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhcc
Confidence 357899999999999999999999876543 444433 4455666788999999999998774 33455553
Q ss_pred CCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC----CHHHHHHHhCcccccCCceEEEEec
Q 030120 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL----DDAAVSEALELHKIKNRQWAIFKTC 159 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
.++++++|+|..+ +.....|+..+.. .+.|+++|+||+|+.... ...++... .+++++++|
T Consensus 85 ~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~--------~~~~~~~~S 149 (188)
T 2wjg_A 85 KPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKI--------LGVKVVPLS 149 (188)
T ss_dssp CCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHH--------HTSCEEECB
T ss_pred CCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHH--------hCCCeEEEE
Confidence 5899999999976 4455556655543 478999999999984321 12222222 234699999
Q ss_pred CCCCCCHHHHHHHHHHHHhcC
Q 030120 160 AIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 160 a~~~~~v~~l~~~i~~~~~~~ 180 (182)
|+++.|++++|+++.+.+.+.
T Consensus 150 a~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 150 AAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp GGGTBSHHHHHHHHHHHHTTC
T ss_pred ecCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999987654
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-27 Score=168.75 Aligned_cols=149 Identities=19% Similarity=0.194 Sum_probs=107.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccc--ceeeEEEECCEEEEEEECCCCCCCccc----------hhhhc
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNNIKFQVWDLGGQTSIRPY----------WRCYF 82 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~~~~~~~D~~g~~~~~~~----------~~~~~ 82 (182)
+.++|+++|++|+|||||+|+|.+..+.. ..++++ .....+.+.+..+.+|||||+..+... +..++
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 36899999999999999999999987543 444443 445556667889999999998876621 22232
Q ss_pred --CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC----HHHHHHHhCcccccCCceEEE
Q 030120 83 --PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD----DAAVSEALELHKIKNRQWAIF 156 (182)
Q Consensus 83 --~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 156 (182)
..+|++++|+|+++.++... +...+.. .+.|+++|+||+|+.+... ...+... .+++++
T Consensus 82 ~~~~~d~ii~VvD~~~~~~~~~---~~~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~--------lg~~~i 146 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLERNLY---LTLQLLE----LGIPCIVALNMLDIAEKQNIRIEIDALSAR--------LGCPVI 146 (274)
T ss_dssp HHTCCSEEEEEEEGGGHHHHHH---HHHHHHH----HTCCEEEEEECHHHHHHTTEEECHHHHHHH--------HTSCEE
T ss_pred hhcCCCEEEEEecCCChHHHHH---HHHHHHh----cCCCEEEEEECccchhhhhHHHHHHHHHHh--------cCCCEE
Confidence 78999999999998644333 3333322 2689999999999843211 1222222 235799
Q ss_pred EecCCCCCCHHHHHHHHHHHHhc
Q 030120 157 KTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 157 ~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
++||++|.|++++++.|.+.+..
T Consensus 147 ~~SA~~g~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 147 PLVSTRGRGIEALKLAIDRYKAN 169 (274)
T ss_dssp ECCCGGGHHHHHHHHHHHTCCCC
T ss_pred EEEcCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999886653
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=9.4e-26 Score=169.87 Aligned_cols=155 Identities=21% Similarity=0.259 Sum_probs=98.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCc--ccccc--cccceeeEEEECCEEEEEEECCCCCCCccch--------hhhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEV--VSTIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPYW--------RCYF 82 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~ 82 (182)
.+.++|+++|.+|+|||||+|+|.+... ....+ |.+.....+.+.+.++.+|||||+..+...+ ..++
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 4568999999999999999999998863 33333 3445566777899999999999987655333 4467
Q ss_pred CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCC
Q 030120 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
+.+|++++|+|++++.++.... ....++... .+.|+++|+||+|+.+...... +.+... ...+++++||++
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~-~~~~~l~~l--~~~piIvV~NK~Dl~~~~~~~~--~~l~~~----~~~~~i~vSAkt 381 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELT-EIRELKAAH--PAAKFLTVANKLDRAANADALI--RAIADG----TGTEVIGISALN 381 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHH-HHHHHHHHC--TTSEEEEEEECTTSCTTTHHHH--HHHHHH----HTSCEEECBTTT
T ss_pred ccCCEEEEEEECCCCcchhhhH-HHHHHHHhc--CCCCEEEEEECcCCCCccchhH--HHHHhc----CCCceEEEEECC
Confidence 8999999999999988764322 222222222 2689999999999976532211 111111 114699999999
Q ss_pred CCCHHHHHHHHHHHHh
Q 030120 163 GEGLFEGMDWLSNTLK 178 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~~ 178 (182)
|.|+++++++|.+.+.
T Consensus 382 g~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 382 GDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TBSHHHHHHHHTHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999999886
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.8e-27 Score=164.63 Aligned_cols=148 Identities=20% Similarity=0.248 Sum_probs=106.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC-cccccccccceeeEEEEC-CEEEEEEECCCCCCCc------cchhhhcC--CC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE-VVSTIPTIGFNVETVQYN-NIKFQVWDLGGQTSIR------PYWRCYFP--NT 85 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~~------~~~~~~~~--~~ 85 (182)
..++|+++|++|+|||||+|+|.+.. +....|+++.......+. +..+.+|||||+..+. ..+..++. .+
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~ 81 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRA 81 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccCCCChHHHHHHHHHhcCCC
Confidence 35799999999999999999999876 333555444433333333 6789999999998875 33455554 69
Q ss_pred CeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC----CCHHHHHHHhCcccccCCceEEEEecCC
Q 030120 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA----LDDAAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
|++++|+|+++.++ ...|...+.. .+.|+++|+||+|+.+. .....+... .+++++++||+
T Consensus 82 d~vi~V~D~t~~e~---~~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~--------lg~~vi~~SA~ 146 (272)
T 3b1v_A 82 DSILNVVDATNLER---NLYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYH--------LGVPVVATSAL 146 (272)
T ss_dssp SEEEEEEEGGGHHH---HHHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHH--------HTSCEEECBTT
T ss_pred CEEEEEecCCchHh---HHHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHH--------cCCCEEEEEcc
Confidence 99999999988643 3344444433 47899999999998421 112222222 23579999999
Q ss_pred CCCCHHHHHHHHHHHHh
Q 030120 162 KGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 162 ~~~~v~~l~~~i~~~~~ 178 (182)
+|.|++++|+++.+.+.
T Consensus 147 ~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 147 KQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp TTBSHHHHHHHHHHSCT
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999988654
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-25 Score=166.55 Aligned_cols=165 Identities=15% Similarity=0.077 Sum_probs=116.5
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc----cccccc-------------------ceeeEEEECCEEEEEEECC
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS----TIPTIG-------------------FNVETVQYNNIKFQVWDLG 69 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~----~~~t~~-------------------~~~~~~~~~~~~~~~~D~~ 69 (182)
...+.++|+++|++|+|||||+++|.+..... ...+.+ ............+.+||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 34678999999999999999999998854322 000000 0000001122789999999
Q ss_pred CCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcc--c
Q 030120 70 GQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELH--K 147 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~--~ 147 (182)
|++.+...+..++..+|++++|+|++++.++.....++..+... ...|+++|+||+|+.+.....+..+.+... .
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 160 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG 160 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999987667777666544322 235899999999997543222222222111 1
Q ss_pred ccCCceEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030120 148 IKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
.....++++++||++|.|+++++++|.+.++..
T Consensus 161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~ 193 (403)
T 3sjy_A 161 TWAENVPIIPVSALHKINIDSLIEGIEEYIKTP 193 (403)
T ss_dssp STTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred hCCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence 123467899999999999999999999877644
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.8e-26 Score=170.80 Aligned_cols=160 Identities=18% Similarity=0.166 Sum_probs=113.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc--cccc--cccceeeEEEECCEEEEEEECCC----------CCCCccchh-
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVV--STIP--TIGFNVETVQYNNIKFQVWDLGG----------QTSIRPYWR- 79 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~- 79 (182)
...++|+++|.+|+|||||+|++.+.... ...+ |.+.....+...+.++.+||||| ++.+.....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 46789999999999999999999987632 2333 33345566777889999999999 444444333
Q ss_pred hhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--HHHHHHHhCcccccCCceEEEE
Q 030120 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFK 157 (182)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
.+++.+|++++|+|++++.+ ....++...+.. .+.|+++|+||+|+.+... .++..+...........+++++
T Consensus 273 ~~~~~ad~~llviD~~~~~~--~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGII--EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 347 (456)
T ss_dssp HHHHHCSEEEEEEETTTCCC--HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhhCCEEEEEEeCCCCcC--HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 46788999999999998754 233333333333 4799999999999975432 2344444333322334568999
Q ss_pred ecCCCCCCHHHHHHHHHHHHhc
Q 030120 158 TCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 158 ~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
+||++|.|++++|+.+.+.+.+
T Consensus 348 ~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 348 MSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHH
T ss_pred EcCCCCcCHHHHHHHHHHHHHH
Confidence 9999999999999999987654
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=4.4e-25 Score=165.65 Aligned_cols=151 Identities=19% Similarity=0.215 Sum_probs=104.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc--cccc--cccceeeEEEECCEEEEEEECCCCCCC---------ccchhhhcCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVV--STIP--TIGFNVETVQYNNIKFQVWDLGGQTSI---------RPYWRCYFPN 84 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~~~ 84 (182)
.+|+++|.+|+|||||+|+|.++... ...| |.+.....+.+.+..+.+|||||.+.. ...+..+++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 37999999999999999999988743 3333 344667778888999999999997642 2345678899
Q ss_pred CCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCce-EEEEecCCCC
Q 030120 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQW-AIFKTCAIKG 163 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 163 (182)
+|++++|+|+.++.+.. ..++..++.. .++|+++|+||+|+.+.. ..+...... . .++ +++++||++|
T Consensus 82 ad~il~V~D~~~~~~~~--d~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~----~-lg~~~~~~iSA~~g 150 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKE--DESLADFLRK---STVDTILVANKAENLREF-EREVKPELY----S-LGFGEPIPVSAEHN 150 (439)
T ss_dssp CSEEEEEEETTTCCCHH--HHHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHG----G-GSSCSCEECBTTTT
T ss_pred CCEEEEEEECCCCCCHH--HHHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHH----h-cCCCCEEEEeccCC
Confidence 99999999998875533 2344444433 368999999999974210 111101111 1 122 4799999999
Q ss_pred CCHHHHHHHHHHHHhc
Q 030120 164 EGLFEGMDWLSNTLKS 179 (182)
Q Consensus 164 ~~v~~l~~~i~~~~~~ 179 (182)
.|+.++++.+.+.+++
T Consensus 151 ~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 151 INLDTMLETIIKKLEE 166 (439)
T ss_dssp BSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccc
Confidence 9999999999988864
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.6e-26 Score=168.58 Aligned_cols=157 Identities=18% Similarity=0.146 Sum_probs=111.0
Q ss_pred hhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc----ccccccceeeEEEECC-EEEEEEECCCCCCCccc-------h
Q 030120 11 SLFGNKEARILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYNN-IKFQVWDLGGQTSIRPY-------W 78 (182)
Q Consensus 11 ~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~-------~ 78 (182)
..+..+.++|+++|++|+|||||++++++..+.. ...|.......+.+.. .++.+|||||++.+... +
T Consensus 28 ~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~ 107 (423)
T 3qq5_A 28 LPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKA 107 (423)
T ss_dssp C---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHH
T ss_pred cCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHH
Confidence 3455778999999999999999999999887642 2334456666677654 49999999999876544 3
Q ss_pred hhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEe
Q 030120 79 RCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
..++..+|++++|+|+... .....|+..+.. .+.|+++|+||+|+.+.... +..+.+. ...+++++++
T Consensus 108 ~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~----~~~piIvV~NK~Dl~~~~~~-~~~~~l~----~~~g~~v~~v 175 (423)
T 3qq5_A 108 RRVFYRADCGILVTDSAPT---PYEDDVVNLFKE----MEIPFVVVVNKIDVLGEKAE-ELKGLYE----SRYEAKVLLV 175 (423)
T ss_dssp HHHHTSCSEEEEECSSSCC---HHHHHHHHHHHH----TTCCEEEECCCCTTTTCCCT-HHHHHSS----CCTTCCCCCC
T ss_pred HHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHh----cCCCEEEEEeCcCCCCccHH-HHHHHHH----HHcCCCEEEE
Confidence 5578899999999999332 334445554433 27899999999999765444 2223332 2345689999
Q ss_pred cCCCCCCHHHHHHHHHHHHhc
Q 030120 159 CAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 159 Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
||++|.|++++++.|.+.+++
T Consensus 176 SAktg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 176 SALQKKGFDDIGKTISEILPG 196 (423)
T ss_dssp SSCCTTSTTTHHHHHHHHSCC
T ss_pred ECCCCCCHHHHHHHHHHhhhh
Confidence 999999999999999998843
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.5e-25 Score=166.32 Aligned_cols=150 Identities=24% Similarity=0.335 Sum_probs=112.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCc--ccccc--cccceeeEEEECCEEEEEEECCCCC-CCcc--------chhhhc
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEV--VSTIP--TIGFNVETVQYNNIKFQVWDLGGQT-SIRP--------YWRCYF 82 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~-~~~~--------~~~~~~ 82 (182)
..++|+++|.+|+|||||+|+|.+.+. ....+ |.+.....+.+.+.++.+|||||.. .... ....++
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 348999999999999999999998764 33333 4456677788899999999999987 5432 234577
Q ss_pred CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCC
Q 030120 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
+.+|++++|+|++++.++.... .+ +.+ .+.|+++|+||+|+.+....+++..... ..++++++||++
T Consensus 322 ~~aD~vl~VvD~s~~~s~~~~~-il-~~l-----~~~piivV~NK~DL~~~~~~~~~~~~~~------~~~~~i~iSAkt 388 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLDEEDRK-IL-ERI-----KNKRYLVVINKVDVVEKINEEEIKNKLG------TDRHMVKISALK 388 (482)
T ss_dssp HHCSEEEEEEETTSCCCHHHHH-HH-HHH-----TTSSEEEEEEECSSCCCCCHHHHHHHHT------CSTTEEEEEGGG
T ss_pred hcccEEEEEecCCCCCCHHHHH-HH-HHh-----cCCCEEEEEECcccccccCHHHHHHHhc------CCCcEEEEECCC
Confidence 8999999999999987765432 22 222 3689999999999975544444433221 224589999999
Q ss_pred CCCHHHHHHHHHHHHh
Q 030120 163 GEGLFEGMDWLSNTLK 178 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~~ 178 (182)
|.|+++++++|.+.+.
T Consensus 389 g~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 389 GEGLEKLEESIYRETQ 404 (482)
T ss_dssp TCCHHHHHHHHHHHTH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998654
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.2e-26 Score=174.09 Aligned_cols=157 Identities=19% Similarity=0.266 Sum_probs=109.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEE--------E----CCEEEEEEECCCCCCCccchhh
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQ--------Y----NNIKFQVWDLGGQTSIRPYWRC 80 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~--------~----~~~~~~~~D~~g~~~~~~~~~~ 80 (182)
..+.+||+++|.+|+|||||++++.+..+.. ..+|.+....... . ....+.+|||||++.+...+..
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 4678999999999999999999999988766 6667766555331 1 2589999999999999999999
Q ss_pred hcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--HHHHHHHhCcccccCCceEEEEe
Q 030120 81 YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
+++.+|++++|+|+++.+. ...|+..+.... .+.|+++|+||+|+.+... .++...... ..+++++++
T Consensus 118 ~l~~~d~ii~V~D~s~~~~---~~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~v 187 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTDSN---KHYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFP-----AIENRFHRI 187 (535)
T ss_dssp HHHSSEEEEEEECGGGGGG---HHHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCG-----GGTTCEEEC
T ss_pred HccCCcEEEEEEeCCCchh---HHHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHH-----hcCCceEEE
Confidence 9999999999999987643 445555554332 3689999999999965322 333333322 233469999
Q ss_pred cCCCCCCHHHHHHHHHHHHhcC
Q 030120 159 CAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 159 Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
||++|.|++++++.+.+.+.+.
T Consensus 188 SA~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 188 SCKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp CC-----CTTHHHHHHHHHTCT
T ss_pred ecCcccCHHHHHHHHHHHHhcc
Confidence 9999999999999999987654
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.3e-24 Score=151.08 Aligned_cols=149 Identities=23% Similarity=0.230 Sum_probs=110.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccc--ceeeEEEECCEEEEEEECCCCCCCcc------chhhhc--CCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG--FNVETVQYNNIKFQVWDLGGQTSIRP------YWRCYF--PNT 85 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~~~ 85 (182)
.++|+++|++|+|||||+|++.+..+.. ..++++ .....+.+.+..+.+|||||+..+.. .+..++ .++
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNA 82 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCC
Confidence 5799999999999999999999987643 444444 44555667888999999999987765 445555 789
Q ss_pred CeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC----CCHHHHHHHhCcccccCCceEEEEecCC
Q 030120 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA----LDDAAVSEALELHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (182)
|++++|+|+++.. ....++..+... ...|+++|+||+|+.+. .....+...+ +++++++||+
T Consensus 83 d~vi~v~D~~~~~---~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~~~~~Sa~ 148 (271)
T 3k53_A 83 DVIVDIVDSTCLM---RNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKEL--------GVPVIPTNAK 148 (271)
T ss_dssp SEEEEEEEGGGHH---HHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHH--------SSCEEECBGG
T ss_pred cEEEEEecCCcch---hhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHc--------CCcEEEEEeC
Confidence 9999999999853 333444444432 23899999999997321 1222333222 3579999999
Q ss_pred CCCCHHHHHHHHHHHHhc
Q 030120 162 KGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 162 ~~~~v~~l~~~i~~~~~~ 179 (182)
+|.|++++++.+.+.+..
T Consensus 149 ~g~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 149 KGEGVEELKRMIALMAEG 166 (271)
T ss_dssp GTBTHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999987754
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-24 Score=157.26 Aligned_cols=158 Identities=21% Similarity=0.234 Sum_probs=115.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECCEEEEEEECCCCCCCcc---------chhhhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP---------YWRCYF 82 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~---------~~~~~~ 82 (182)
...++++++|.+|+|||||+|++.+..+.. ...|.......+...+..+.+|||||...... ......
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 567899999999999999999999887432 23344555566666788999999999754321 122344
Q ss_pred CCCCeEEEEEeCCCcc--cHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecC
Q 030120 83 PNTEAVIYVVDSSDTD--RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
..+|++++|+|+++.. ++.....|+..+.... .+.|+++|+||+|+.+.....+..... ...+++++++||
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~~~~~~~~~~-----~~~~~~~~~iSA 317 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEENIKRLEKFV-----KEKGLNPIKISA 317 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHHHHHHHHHHH-----HHTTCCCEECBT
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChHHHHHHHHHH-----HhcCCCeEEEeC
Confidence 5689999999998876 6777777777765532 278999999999986432111121111 123457999999
Q ss_pred CCCCCHHHHHHHHHHHHhc
Q 030120 161 IKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 161 ~~~~~v~~l~~~i~~~~~~ 179 (182)
++|+|+++++++|.+.+..
T Consensus 318 ~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 318 LKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TTTBTHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999987653
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-26 Score=158.25 Aligned_cols=119 Identities=26% Similarity=0.336 Sum_probs=94.7
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc----ccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCC---
Q 030120 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN--- 84 (182)
Q Consensus 12 ~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~--- 84 (182)
....+.++|+++|++|+|||||++++.+..+.. ..++.+... ....+.+|||||++.+...+..+++.
T Consensus 7 ~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 81 (218)
T 1nrj_B 7 KQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-----DGSGVTLVDFPGHVKLRYKLSDYLKTRAK 81 (218)
T ss_dssp ---CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-----GGSSCEEEECCCCGGGTHHHHHHHHHHGG
T ss_pred CccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-----eCceEEEEECCCcHHHHHHHHHHHHhccc
Confidence 345678999999999999999999999887654 233333222 56789999999999998888888876
Q ss_pred -CCeEEEEEeCC-CcccHHHHHHHHHHHHhccc---cCCCeEEEEEeCCCCCCCCC
Q 030120 85 -TEAVIYVVDSS-DTDRIQTAKEEFHAILEEEE---LKGAVALIFANKQDLPGALD 135 (182)
Q Consensus 85 -~d~ii~v~d~~-~~~s~~~~~~~~~~~~~~~~---~~~~~iivv~nK~D~~~~~~ 135 (182)
+|++++|+|++ ++.++.....|+..++.... ..+.|+++|+||+|+.+...
T Consensus 82 ~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 137 (218)
T 1nrj_B 82 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 137 (218)
T ss_dssp GEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred cCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCC
Confidence 89999999999 88889989888888876432 25799999999999976654
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-24 Score=153.59 Aligned_cols=157 Identities=19% Similarity=0.101 Sum_probs=109.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc--ccc--cccceeeEEEECCEEEEEEECCCCC---------CCccchhhhc
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQYNNIKFQVWDLGGQT---------SIRPYWRCYF 82 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~~---------~~~~~~~~~~ 82 (182)
+..+|+++|++|+|||||+|++++..+.. ..+ |.......+......+.+|||||+. .+......++
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l 86 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI 86 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHH
Confidence 45589999999999999999999988643 222 2223334455678899999999987 2334456678
Q ss_pred CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCC
Q 030120 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
+.+|++++|+|+.+ -+ ....++...+.. .+.|+++++||+|+... ...+...............++++||++
T Consensus 87 ~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~--~~~~~~~l~~l~~~~~~~~~i~iSA~~ 158 (301)
T 1ega_A 87 GDVELVIFVVEGTR-WT--PDDEMVLNKLRE---GKAPVILAVNKVDNVQE--KADLLPHLQFLASQMNFLDIVPISAET 158 (301)
T ss_dssp CCEEEEEEEEETTC-CC--HHHHHHHHHHHS---SSSCEEEEEESTTTCCC--HHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred hcCCEEEEEEeCCC-CC--HHHHHHHHHHHh---cCCCEEEEEECcccCcc--HHHHHHHHHHHHHhcCcCceEEEECCC
Confidence 89999999999977 32 333344444332 46899999999998651 223322222111111123699999999
Q ss_pred CCCHHHHHHHHHHHHhcC
Q 030120 163 GEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~~~~ 180 (182)
+.|++++++.+.+.+++.
T Consensus 159 g~~v~~l~~~i~~~l~~~ 176 (301)
T 1ega_A 159 GLNVDTIAAIVRKHLPEA 176 (301)
T ss_dssp TTTHHHHHHHHHTTCCBC
T ss_pred CCCHHHHHHHHHHhCCcC
Confidence 999999999999876643
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.7e-25 Score=159.82 Aligned_cols=159 Identities=24% Similarity=0.265 Sum_probs=114.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECC-EEEEEEECCCC----CCCccchhhh---cCCCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNN-IKFQVWDLGGQ----TSIRPYWRCY---FPNTE 86 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~-~~~~~~D~~g~----~~~~~~~~~~---~~~~d 86 (182)
.+|+++|.+|+|||||++++++..+.. ..+|...+...+.+.+ ..+.+|||||. +....+...+ +..++
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 468999999999999999998876432 2345566666677754 89999999994 2333333334 34599
Q ss_pred eEEEEEeCCC---cccHHHHHHHHHHHHhccc-cCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCC
Q 030120 87 AVIYVVDSSD---TDRIQTAKEEFHAILEEEE-LKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 87 ~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
++++|+|+++ ..++.....|..++..... ..++|+++|+||+|+.+. .+..+.+.... ....+++++||++
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~---~e~~~~l~~~l--~~~~~v~~iSA~t 313 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA---AENLEAFKEKL--TDDYPVFPISAVT 313 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH---HHHHHHHHHHC--CSCCCBCCCSSCC
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC---HHHHHHHHHHh--hcCCCEEEEECCC
Confidence 9999999998 6778887777777655321 257899999999998643 12111221111 1115699999999
Q ss_pred CCCHHHHHHHHHHHHhcCC
Q 030120 163 GEGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~~~~~ 181 (182)
+.|+++++++|.+.+.+.+
T Consensus 314 g~gi~eL~~~l~~~l~~~~ 332 (342)
T 1lnz_A 314 REGLRELLFEVANQLENTP 332 (342)
T ss_dssp SSTTHHHHHHHHHHHTSCC
T ss_pred CcCHHHHHHHHHHHHhhCc
Confidence 9999999999999887643
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-24 Score=157.59 Aligned_cols=133 Identities=22% Similarity=0.377 Sum_probs=106.2
Q ss_pred ccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCC----------cccHHHHHHHHHHHHhcccc
Q 030120 47 PTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSD----------TDRIQTAKEEFHAILEEEEL 116 (182)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~ 116 (182)
+|+++....+.++...+.+|||+|++.++..|..++++++++|+|+|+++ ..++.....|+..+......
T Consensus 179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred ceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 35566667777789999999999999999999999999999999999998 56799999999999876666
Q ss_pred CCCeEEEEEeCCCCCC-----------------CCCHHHHHHHhCc-----ccc-cCCceEEEEecCCCCCCHHHHHHHH
Q 030120 117 KGAVALIFANKQDLPG-----------------ALDDAAVSEALEL-----HKI-KNRQWAIFKTCAIKGEGLFEGMDWL 173 (182)
Q Consensus 117 ~~~~iivv~nK~D~~~-----------------~~~~~~~~~~~~~-----~~~-~~~~~~~~~~Sa~~~~~v~~l~~~i 173 (182)
.+.|+++++||+|+.+ ....++....... ... ....+.+++|||+++.||+++|+++
T Consensus 259 ~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v 338 (353)
T 1cip_A 259 TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAV 338 (353)
T ss_dssp TTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHH
Confidence 7899999999999842 1233333333321 000 1356889999999999999999999
Q ss_pred HHHHhc
Q 030120 174 SNTLKS 179 (182)
Q Consensus 174 ~~~~~~ 179 (182)
.+.+..
T Consensus 339 ~~~i~~ 344 (353)
T 1cip_A 339 TDVIIK 344 (353)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987754
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-24 Score=161.12 Aligned_cols=159 Identities=19% Similarity=0.183 Sum_probs=109.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc--cccc--cccceeeEEEECCEEEEEEECCCCCCCccc------------hh
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVV--STIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPY------------WR 79 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------------~~ 79 (182)
..++++++|++|+|||||+|++.+.... ...+ |.+.....+.+.+..+.+|||||....... ..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 4589999999999999999999998753 2333 333555667778889999999997433211 13
Q ss_pred hhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--HHHHHHHhCcccccCCceEEEE
Q 030120 80 CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFK 157 (182)
Q Consensus 80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
.+++.+|++++++|+.++.+... .++...+.. .+.|+++|+||+|+.+... .+++...+..........++++
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~--~~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQD--QRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIF 333 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhhCCEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEE
Confidence 45677899999999998766543 223333332 4789999999999965422 3333333322222334567999
Q ss_pred ecCCCCCCHHHHHHHHHHHHhc
Q 030120 158 TCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 158 ~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
+||++|.|++++++.+.+.+.+
T Consensus 334 ~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 334 TSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999887654
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.6e-24 Score=158.77 Aligned_cols=162 Identities=15% Similarity=0.078 Sum_probs=105.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc---c-ccc--cccceeeEEEE---------------C--------CEEEE
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVV---S-TIP--TIGFNVETVQY---------------N--------NIKFQ 64 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~---~-~~~--t~~~~~~~~~~---------------~--------~~~~~ 64 (182)
....++|+++|+.++|||||+++|.+.... . ..+ |....+..... . ...+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 356799999999999999999999865422 1 222 44433322221 1 16899
Q ss_pred EEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC----HHHHH
Q 030120 65 VWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD----DAAVS 140 (182)
Q Consensus 65 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----~~~~~ 140 (182)
+|||||++.+...+......+|++++|+|++++.......+.+..+ ... ...|+++++||+|+.+... .+++.
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~~l--~~~~iivv~NK~Dl~~~~~~~~~~~~i~ 161 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL-EIL--GIDKIIIVQNKIDLVDEKQAEENYEQIK 161 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH-HHT--TCCCEEEEEECTTSSCTTTTTTHHHHHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH-HHc--CCCeEEEEEEccCCCCHHHHHHHHHHHH
Confidence 9999999988888888888999999999999764223333333322 221 2358999999999975432 13333
Q ss_pred HHhCcccccCCceEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030120 141 EALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
+.+... ....++++++||++|.|+++++++|.+.++..
T Consensus 162 ~~l~~~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~ 199 (408)
T 1s0u_A 162 EFVKGT--IAENAPIIPISAHHEANIDVLLKAIQDFIPTP 199 (408)
T ss_dssp HHHTTS--TTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred HHHhhc--CCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 333211 12457899999999999999999999877643
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=9.8e-24 Score=151.43 Aligned_cols=135 Identities=24% Similarity=0.368 Sum_probs=107.7
Q ss_pred cccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCC----------CcccHHHHHHHHHHHHhccc
Q 030120 46 IPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS----------DTDRIQTAKEEFHAILEEEE 115 (182)
Q Consensus 46 ~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~ 115 (182)
.+|+++....+.+++..+++|||+|++.++..|..++++++++|+|+|++ +..++.....|+..+.....
T Consensus 152 ~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~ 231 (327)
T 3ohm_A 152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW 231 (327)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGG
T ss_pred CceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhc
Confidence 34667777778889999999999999999999999999999999999654 67788899999999988777
Q ss_pred cCCCeEEEEEeCCCCCC------------------CCCHHHHHHHhC-----cccccCCceEEEEecCCCCCCHHHHHHH
Q 030120 116 LKGAVALIFANKQDLPG------------------ALDDAAVSEALE-----LHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 116 ~~~~~iivv~nK~D~~~------------------~~~~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 172 (182)
..+.|+++++||+|+.+ ....++....+. ........+.+++|||+++.||+.+|+.
T Consensus 232 ~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~ 311 (327)
T 3ohm_A 232 FQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAA 311 (327)
T ss_dssp GTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHH
T ss_pred cCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHH
Confidence 77899999999999843 122233332221 1223346688999999999999999999
Q ss_pred HHHHHhcC
Q 030120 173 LSNTLKSG 180 (182)
Q Consensus 173 i~~~~~~~ 180 (182)
+.+.+.+.
T Consensus 312 v~~~Il~~ 319 (327)
T 3ohm_A 312 VKDTILQL 319 (327)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99887653
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-24 Score=162.49 Aligned_cols=151 Identities=17% Similarity=0.198 Sum_probs=103.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc--ccccc--ccceeeEEEECCEEEEEEECCCCCCCccch--------hhhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVV--STIPT--IGFNVETVQYNNIKFQVWDLGGQTSIRPYW--------RCYF 82 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~--~~~~t--~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~ 82 (182)
.+.++|+++|++|+|||||+|+|.+..+. ...++ .+.....+...+.++.+|||||.......+ ..++
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 35689999999999999999999987543 33333 335556677889999999999976544332 3367
Q ss_pred CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCC
Q 030120 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
..+|++++|+|++++.+... ..++..+ ...|+++|+||+|+.+..... .... .....+++++||++
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l------~~~piivV~NK~Dl~~~~~~~----~~~~---~~~~~~~i~iSAkt 367 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD-QEIYEQV------KHRPLILVMNKIDLVEKQLIT----SLEY---PENITQIVHTAAAQ 367 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH-HHHHHHH------TTSCEEEEEECTTSSCGGGST----TCCC---CTTCCCEEEEBTTT
T ss_pred hcCCEEEEEeccCCCCCHHH-HHHHHhc------cCCcEEEEEECCCCCcchhhH----HHHH---hccCCcEEEEECCC
Confidence 88999999999998866544 2333333 236999999999996542111 1111 11345799999999
Q ss_pred CCCHHHHHHHHHHHHhc
Q 030120 163 GEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~~~ 179 (182)
|.|++++++.|.+.+..
T Consensus 368 g~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 368 KQGIDSLETAILEIVQT 384 (462)
T ss_dssp TBSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999998764
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.2e-25 Score=165.12 Aligned_cols=150 Identities=20% Similarity=0.243 Sum_probs=101.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccc--c--cccceeeEEEECCEEEEEEECCCCC--------CCccchhhhcCCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVSTI--P--TIGFNVETVQYNNIKFQVWDLGGQT--------SIRPYWRCYFPNT 85 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~~~--~--t~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~~~~~ 85 (182)
.+|+++|.+|+|||||+|+|.+..+.... + |.+..+..+.+.+..+.+|||||++ .+...+..+++.+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 68999999999999999999987765422 2 2233344444567889999999986 3455567788999
Q ss_pred CeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCC
Q 030120 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
|++++|+|+.++.+.. ..++..++.. .+.|+++|+||+|+.+... ..... ......+++++||++|.|
T Consensus 84 d~il~vvD~~~~~~~~--d~~~~~~l~~---~~~pvilv~NK~D~~~~~~------~~~~~-~~lg~~~~~~iSA~~g~g 151 (436)
T 2hjg_A 84 DVIIFMVNGREGVTAA--DEEVAKILYR---TKKPVVLAVNKLDNTEMRA------NIYDF-YSLGFGEPYPISGTHGLG 151 (436)
T ss_dssp SEEEEEEETTTCSCHH--HHHHHHHHTT---CCSCEEEEEECCCC-----------CCCSS-GGGSSCCCEECBTTTTBT
T ss_pred CEEEEEEeCCCCCCHH--HHHHHHHHHH---cCCCEEEEEECccCccchh------hHHHH-HHcCCCCeEEEeCcCCCC
Confidence 9999999999886643 3455555543 4789999999999864310 11111 111112589999999999
Q ss_pred HHHHHHHHHHHHhc
Q 030120 166 LFEGMDWLSNTLKS 179 (182)
Q Consensus 166 v~~l~~~i~~~~~~ 179 (182)
+.++++++.+.+++
T Consensus 152 v~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 152 LGDLLDAVAEHFKN 165 (436)
T ss_dssp HHHHHHHHHHTGGG
T ss_pred hHHHHHHHHHhcCc
Confidence 99999999998864
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-24 Score=164.12 Aligned_cols=158 Identities=16% Similarity=0.142 Sum_probs=111.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC----c---cc---ccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE----V---VS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNT 85 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~----~---~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 85 (182)
+.++|+++|++++|||||+++|.+.. . .. ...|.+.....+.+.+..+.+|||||++.+...+..++..+
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~a 97 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADII 97 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSC
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhC
Confidence 57899999999999999999999876 2 11 22355556666777889999999999999888888899999
Q ss_pred CeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccc---cCCceEEEEecCCC
Q 030120 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI---KNRQWAIFKTCAIK 162 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~ 162 (182)
|++++|+|++++.. ....+.+..+ .. .+.|+++++||+|+.+....+++.+.+..... .....+++++||++
T Consensus 98 D~~ilVvda~~g~~-~qt~e~l~~~-~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~ 172 (482)
T 1wb1_A 98 DLALIVVDAKEGPK-TQTGEHMLIL-DH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKT 172 (482)
T ss_dssp CEEEEEEETTTCSC-HHHHHHHHHH-HH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTT
T ss_pred CEEEEEEecCCCcc-HHHHHHHHHH-HH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcC
Confidence 99999999988532 2223333222 22 36788999999999753222222222221110 11256899999999
Q ss_pred CCCHHHHHHHHHHHHh
Q 030120 163 GEGLFEGMDWLSNTLK 178 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~~ 178 (182)
|.|+++++++|.+.++
T Consensus 173 g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 173 GFGVDELKNLIITTLN 188 (482)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhc
Confidence 9999999999998765
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.7e-24 Score=159.42 Aligned_cols=163 Identities=15% Similarity=0.103 Sum_probs=111.9
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc---c-ccc--cccceeeEEEEC-----------------------CEEE
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVV---S-TIP--TIGFNVETVQYN-----------------------NIKF 63 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~---~-~~~--t~~~~~~~~~~~-----------------------~~~~ 63 (182)
..+..++|+++|++++|||||+++|.+.... . ..+ |+...+....+. ...+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 3466789999999999999999999865321 1 223 444443333220 1689
Q ss_pred EEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH----HHH
Q 030120 64 QVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD----AAV 139 (182)
Q Consensus 64 ~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~----~~~ 139 (182)
.+|||||++.+.......+..+|++++|+|++++.......+.+..+ ... ...|+++++||+|+.+.... +++
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~~~--~~~~iivviNK~Dl~~~~~~~~~~~~i 162 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL-QII--GQKNIIIAQNKIELVDKEKALENYRQI 162 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH-HHH--TCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc--CCCcEEEEEECccCCCHHHHHHHHHHH
Confidence 99999999988877777888899999999999764223333333322 221 23589999999999753211 122
Q ss_pred HHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030120 140 SEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
.+.+... ....++++++||++|.|+++++++|.+.++..
T Consensus 163 ~~~l~~~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p 201 (410)
T 1kk1_A 163 KEFIEGT--VAENAPIIPISALHGANIDVLVKAIEDFIPTP 201 (410)
T ss_dssp HHHHTTS--TTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HHHHHhc--CcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 2222211 12457899999999999999999999877643
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-23 Score=159.52 Aligned_cols=114 Identities=16% Similarity=0.169 Sum_probs=88.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC------------------Cccc-------ccccccceeeEEEECCEEEEEEECC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG------------------EVVS-------TIPTIGFNVETVQYNNIKFQVWDLG 69 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~------------------~~~~-------~~~t~~~~~~~~~~~~~~~~~~D~~ 69 (182)
.+..+|+|+|++|+|||||+++|+.. .... ...|.......+.+.+..+.+||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 45679999999999999999999621 1111 1224445566777889999999999
Q ss_pred CCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 70 GQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
|+..+...+..+++.+|++++|+|++++....... ++..+.. .++|+++|+||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~-~~~~~~~----~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK-LMEVCRL----RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH-HHHHHHT----TTCCEEEEEECTTSCCS
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEeCCCCccc
Confidence 99999999999999999999999999876654443 3333322 46899999999999654
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.7e-25 Score=168.07 Aligned_cols=159 Identities=18% Similarity=0.135 Sum_probs=114.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccc--cccceeeEEEE-CCEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~--t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
++..+|+++|++|+|||||+++|.+..+.. ..+ |..+....+.. .+..+.+|||||++.+..++..+++.+|++++
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 356789999999999999999998776544 333 33333334433 45689999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC---HHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD---DAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
|+|++++...+.. ..+..... .+.|+++++||+|+.+... ..++.............++++++||++|.|++
T Consensus 82 VVDa~dg~~~qt~-e~l~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~ 156 (537)
T 3izy_P 82 VVAADDGVMKQTV-ESIQHAKD----AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMM 156 (537)
T ss_dssp ECBSSSCCCHHHH-HHHHHHHT----TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSH
T ss_pred EEECCCCccHHHH-HHHHHHHH----cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCch
Confidence 9999987654333 23333322 4689999999999964321 12222221111111235789999999999999
Q ss_pred HHHHHHHHHHh
Q 030120 168 EGMDWLSNTLK 178 (182)
Q Consensus 168 ~l~~~i~~~~~ 178 (182)
++++.|...+.
T Consensus 157 eLle~I~~l~~ 167 (537)
T 3izy_P 157 ALAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHHT
T ss_pred hHHHHHHHhhh
Confidence 99999988754
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-23 Score=152.91 Aligned_cols=160 Identities=21% Similarity=0.146 Sum_probs=106.9
Q ss_pred ccE-EEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECCEEEEEEECCCCCC---------CccchhhhcC
Q 030120 17 EAR-ILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTS---------IRPYWRCYFP 83 (182)
Q Consensus 17 ~~~-v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~~ 83 (182)
.++ |+++|.+|+|||||+|++.+..+.. ..+|.+.....+.+.+..+.+|||+|.-. +.. ....+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~-tl~~~~ 256 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFV-TLSEAK 256 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHH-HHHGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHH-HHHHHH
Confidence 455 9999999999999999999887532 34566677778888889999999999622 111 223468
Q ss_pred CCCeEEEEEeCCCcc--cHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHh-Cccccc-CCceEEEEec
Q 030120 84 NTEAVIYVVDSSDTD--RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEAL-ELHKIK-NRQWAIFKTC 159 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~S 159 (182)
.+|++++|+|++++. ..... ..+..++......+.|+++|.||+|+.+.. ........ ...... ....+++++|
T Consensus 257 ~aD~il~VvD~s~~~~~~~~~~-~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~S 334 (364)
T 2qtf_A 257 YSDALILVIDSTFSENLLIETL-QSSFEILREIGVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKELYSPIFDVIPIS 334 (364)
T ss_dssp GSSEEEEEEETTSCHHHHHHHH-HHHHHHHHHHTCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHHCSCEEEEEECB
T ss_pred hCCEEEEEEECCCCcchHHHHH-HHHHHHHHHhCcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 899999999998875 33332 233344444444578999999999997543 22211111 000001 2245689999
Q ss_pred CCCCCCHHHHHHHHHHHHhc
Q 030120 160 AIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 160 a~~~~~v~~l~~~i~~~~~~ 179 (182)
|+++.|++++++.|.+.+..
T Consensus 335 A~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 335 ALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp TTTTBSHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhcc
Confidence 99999999999999987764
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-23 Score=151.97 Aligned_cols=131 Identities=24% Similarity=0.332 Sum_probs=95.9
Q ss_pred ccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCC----------cccHHHHHHHHHHHHhccccCC
Q 030120 49 IGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSD----------TDRIQTAKEEFHAILEEEELKG 118 (182)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~ 118 (182)
+++....+.+++..+.+|||+|++.++..|..++++++++|+|+|+++ ..++.....|+..+.......+
T Consensus 189 ~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~ 268 (362)
T 1zcb_A 189 KGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSN 268 (362)
T ss_dssp SSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTT
T ss_pred cceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCC
Confidence 345555666788999999999999999999999999999999999999 6789999999999987766678
Q ss_pred CeEEEEEeCCCCCC------------------CCCHHHHHHHh-----Cccccc-CCceEEEEecCCCCCCHHHHHHHHH
Q 030120 119 AVALIFANKQDLPG------------------ALDDAAVSEAL-----ELHKIK-NRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 119 ~~iivv~nK~D~~~------------------~~~~~~~~~~~-----~~~~~~-~~~~~~~~~Sa~~~~~v~~l~~~i~ 174 (182)
.|+++++||+|+.+ ....++..... ...... ...+.+++|||+++.||+++|+++.
T Consensus 269 ~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~ 348 (362)
T 1zcb_A 269 VSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVK 348 (362)
T ss_dssp SEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHH
Confidence 99999999999852 12333433332 111111 3467899999999999999999998
Q ss_pred HHHhc
Q 030120 175 NTLKS 179 (182)
Q Consensus 175 ~~~~~ 179 (182)
+.+..
T Consensus 349 ~~i~~ 353 (362)
T 1zcb_A 349 DTILH 353 (362)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-23 Score=157.46 Aligned_cols=154 Identities=16% Similarity=0.175 Sum_probs=104.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCc--cc--------------------------------ccccccceeeEEEEC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEV--VS--------------------------------TIPTIGFNVETVQYN 59 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~--~~--------------------------------~~~t~~~~~~~~~~~ 59 (182)
....++|+++|++|+|||||+++|++..- .. ...|.+.....+...
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 45678999999999999999999964421 00 112344445556667
Q ss_pred CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccH------HHHHHHHHHHHhccccCCCe-EEEEEeCCCCCC
Q 030120 60 NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRI------QTAKEEFHAILEEEELKGAV-ALIFANKQDLPG 132 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~ 132 (182)
+..+.+|||||++++...+..++..+|++++|+|++++... ....+.+... .. .+.| +++++||+|+..
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~-~~---~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLA-KT---AGVKHLIVLINKMDDPT 169 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHH-HH---cCCCeEEEEeecCCCcc
Confidence 88999999999999999999999999999999999986421 1223222222 22 3455 999999999854
Q ss_pred CCC----HHHHHHHh----Cccccc-CCceEEEEecCCCCCCHHHHHH
Q 030120 133 ALD----DAAVSEAL----ELHKIK-NRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 133 ~~~----~~~~~~~~----~~~~~~-~~~~~~~~~Sa~~~~~v~~l~~ 171 (182)
... .+++...+ ...... ...++++++||++|.|+.++.+
T Consensus 170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 221 11222211 111111 1257899999999999998554
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-23 Score=150.28 Aligned_cols=132 Identities=26% Similarity=0.358 Sum_probs=104.2
Q ss_pred ccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCC----------CcccHHHHHHHHHHHHhcccc
Q 030120 47 PTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS----------DTDRIQTAKEEFHAILEEEEL 116 (182)
Q Consensus 47 ~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~ 116 (182)
+|+++....+.+++..+++|||+|++.++..|..++++++++|+|+|++ +..++.....|+..+......
T Consensus 147 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~ 226 (340)
T 4fid_A 147 KTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL 226 (340)
T ss_dssp CCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred ceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence 3556677777778899999999999999999999999999999999998 678899999999999887777
Q ss_pred CCCeEEEEEeCCCCCCC-----------------CCHHHHHHHhCccc-----------ccC-----------CceEEEE
Q 030120 117 KGAVALIFANKQDLPGA-----------------LDDAAVSEALELHK-----------IKN-----------RQWAIFK 157 (182)
Q Consensus 117 ~~~~iivv~nK~D~~~~-----------------~~~~~~~~~~~~~~-----------~~~-----------~~~~~~~ 157 (182)
.+.|+++++||+|+.+. ...++....+.... ... ..+.+++
T Consensus 227 ~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~ 306 (340)
T 4fid_A 227 KGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNP 306 (340)
T ss_dssp TTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEE
T ss_pred CCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEE
Confidence 78999999999998431 11222222221111 111 4588999
Q ss_pred ecCCCCCCHHHHHHHHHHHHh
Q 030120 158 TCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 158 ~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
|||++..||+.+|+.+.+.+.
T Consensus 307 TsA~dt~nv~~vF~~v~~~Il 327 (340)
T 4fid_A 307 TNATDGSNIKRVFMLAVDVIM 327 (340)
T ss_dssp ECTTCHHHHHHHHHHHHHHHH
T ss_pred EEeeCcHHHHHHHHHHHHHHH
Confidence 999999999999999988765
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-23 Score=147.23 Aligned_cols=165 Identities=15% Similarity=0.142 Sum_probs=104.5
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc--ccc---cccceeeEEEECCEEEEEEECCCCCCCccc----------
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS--TIP---TIGFNVETVQYNNIKFQVWDLGGQTSIRPY---------- 77 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~---t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~---------- 77 (182)
+..+.++|+++|++|+|||||+|++++..... ..+ |.......+.+.+..+.+|||||+......
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~ 97 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQR 97 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence 34577999999999999999999999877332 222 334455566778899999999997654322
Q ss_pred -hhhhcCCCCeEEEEEeCCCcccH-HHHHHHHHHHHhccccCCCeEEEEEe-CCCCCCCCCHHH---------HHHHhCc
Q 030120 78 -WRCYFPNTEAVIYVVDSSDTDRI-QTAKEEFHAILEEEELKGAVALIFAN-KQDLPGALDDAA---------VSEALEL 145 (182)
Q Consensus 78 -~~~~~~~~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~iivv~n-K~D~~~~~~~~~---------~~~~~~~ 145 (182)
...+++.+|++++|+|+++.... .....++....... ...|.++++| |+|+... .... +......
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~--~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~ 174 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED--AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAA 174 (260)
T ss_dssp HHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHH
T ss_pred HHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch--hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHH
Confidence 23367899999999999863221 12223333332211 1345666666 9999743 2222 1111111
Q ss_pred ccccCCceEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030120 146 HKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 146 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
.......+..+++||+++.|++++|+.|.+.+...
T Consensus 175 ~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 175 CGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp TTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 11000001128899999999999999999988764
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-23 Score=153.78 Aligned_cols=148 Identities=10% Similarity=0.062 Sum_probs=109.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcc
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (182)
+|+++|++++|||||+++|+ ....|++.....+...+..+.+|||||++++.......++.+|++++|+| .++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-----~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g- 95 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-----KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQG- 95 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-----EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTC-
T ss_pred EEEEECCCCCCHHHHHHHHH-----hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCC-
Confidence 89999999999999999998 33455666666666678899999999999998888888899999999999 544
Q ss_pred cHHHHHHHHHHHHhccccCCCeE-EEEEe-CCCCCCCCCHHHHHHHhCccc--ccCCceEEEE--ecCCC---CCCHHHH
Q 030120 99 RIQTAKEEFHAILEEEELKGAVA-LIFAN-KQDLPGALDDAAVSEALELHK--IKNRQWAIFK--TCAIK---GEGLFEG 169 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~i-ivv~n-K~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~Sa~~---~~~v~~l 169 (182)
......+++..... .+.|. ++++| |+|+ +....+++.+.+.... .....+++++ +||++ +.|++++
T Consensus 96 ~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L 170 (370)
T 2elf_A 96 LDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDEL 170 (370)
T ss_dssp CCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHH
T ss_pred CcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHH
Confidence 34455555544422 25666 99999 9998 4321122112221111 1124578999 99999 9999999
Q ss_pred HHHHHHHHh
Q 030120 170 MDWLSNTLK 178 (182)
Q Consensus 170 ~~~i~~~~~ 178 (182)
++.|.+.++
T Consensus 171 ~~~l~~~~~ 179 (370)
T 2elf_A 171 KARINEVAE 179 (370)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhcc
Confidence 999998765
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.90 E-value=6.7e-23 Score=153.61 Aligned_cols=159 Identities=17% Similarity=0.121 Sum_probs=105.3
Q ss_pred HHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCc---ccc---------------------------------ccccc
Q 030120 7 RMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEV---VST---------------------------------IPTIG 50 (182)
Q Consensus 7 ~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~---~~~---------------------------------~~t~~ 50 (182)
.++.+......++|+++|++++|||||+++|++... ... ..|..
T Consensus 14 ~~l~~~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~ 93 (434)
T 1zun_B 14 AYLGQHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITID 93 (434)
T ss_dssp --CCSTTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCC
T ss_pred HHHhhcccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEE
Confidence 344444445678999999999999999999976531 000 01222
Q ss_pred ceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCC
Q 030120 51 FNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDL 130 (182)
Q Consensus 51 ~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~ 130 (182)
.....+......+.+|||||++.+...+..++..+|++++|+|++++.. ....+++... ... ...|+++|+||+|+
T Consensus 94 ~~~~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~-~~~--~~~~iIvviNK~Dl 169 (434)
T 1zun_B 94 VAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIA-SLL--GIKHIVVAINKMDL 169 (434)
T ss_dssp CEEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHH-HHT--TCCEEEEEEECTTT
T ss_pred eeeeEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHH-HHc--CCCeEEEEEEcCcC
Confidence 2334455577899999999999998888888999999999999998753 3333444333 221 12479999999999
Q ss_pred CCCCCH--HHHHHHhCccc--cc--CCceEEEEecCCCCCCHHHH
Q 030120 131 PGALDD--AAVSEALELHK--IK--NRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 131 ~~~~~~--~~~~~~~~~~~--~~--~~~~~~~~~Sa~~~~~v~~l 169 (182)
.+.... .++........ .. ...++++++||++|.|++++
T Consensus 170 ~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 170 NGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 753211 11222221111 11 23478999999999999874
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-23 Score=155.22 Aligned_cols=162 Identities=17% Similarity=0.167 Sum_probs=112.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC--------Cccc------------ccccccceeeEEEECCEEEEEEECCCCCC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMG--------EVVS------------TIPTIGFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~--------~~~~------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 73 (182)
....++|+++|++|+|||||+++|.+. .+.. ...|.......+...+..+.+|||||++.
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 356789999999999999999999873 2111 11133333334445678999999999999
Q ss_pred CccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCCCCC-HH----HHHHHhCccc
Q 030120 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGALD-DA----AVSEALELHK 147 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~-~~----~~~~~~~~~~ 147 (182)
+...+..++..+|++++|+|++++.. ....+++..+.. .+.| +++++||+|+.+... .+ ++.+.+....
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 98888889999999999999998754 344445544322 3677 899999999974211 11 1112221111
Q ss_pred ccCCceEEEEecCCCCCC------------------HHHHHHHHHHHHhcC
Q 030120 148 IKNRQWAIFKTCAIKGEG------------------LFEGMDWLSNTLKSG 180 (182)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~------------------v~~l~~~i~~~~~~~ 180 (182)
.....++++++||++|.| +.++++.|.+.++..
T Consensus 163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p 213 (405)
T 2c78_A 163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTP 213 (405)
T ss_dssp SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCC
T ss_pred ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCC
Confidence 112346899999999987 888999888877643
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.7e-24 Score=142.55 Aligned_cols=125 Identities=28% Similarity=0.409 Sum_probs=95.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc----ccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCC----C
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN----T 85 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~----~ 85 (182)
..+.++|+++|++|+|||||++++.+..+.. ..++.... +....+.+|||||++.+...+..++.. +
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 119 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-----YDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 119 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------C-----CCCTTCSEEEETTCCBSSCCHHHHHHHHGGGE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeee-----ecCCeEEEEECCCCchHHHHHHHHHHhhcccC
Confidence 4678899999999999999999999887544 22222221 256788999999999988887777765 8
Q ss_pred CeEEEEEeCC-CcccHHHHHHHHHHHHhccc---cCCCeEEEEEeCCCCCCCCCHHHHHHHh
Q 030120 86 EAVIYVVDSS-DTDRIQTAKEEFHAILEEEE---LKGAVALIFANKQDLPGALDDAAVSEAL 143 (182)
Q Consensus 86 d~ii~v~d~~-~~~s~~~~~~~~~~~~~~~~---~~~~~iivv~nK~D~~~~~~~~~~~~~~ 143 (182)
|++++|+|++ +..++.....|+..++.... ..+.|+++|+||+|+.+.....++.+.+
T Consensus 120 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 120 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp EEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred CEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence 9999999999 88888888888888765432 2579999999999998766665555444
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-22 Score=156.23 Aligned_cols=159 Identities=19% Similarity=0.191 Sum_probs=111.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC--Cccc----------------ccccccceeeEEEEC-----CEEEEEEECCCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG--EVVS----------------TIPTIGFNVETVQYN-----NIKFQVWDLGGQ 71 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~--~~~~----------------~~~t~~~~~~~~~~~-----~~~~~~~D~~g~ 71 (182)
++..+++++|+.++|||||+++|+.. .+.. ...|+......+.+. ...+.+|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 45679999999999999999999752 1110 001222223344443 378899999999
Q ss_pred CCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCC
Q 030120 72 TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNR 151 (182)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 151 (182)
..+...+..+++.+|++++|+|++++.+.+....|.... . .+.|+++|+||+|+.... ..++.+.+.... ...
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~-~----~~ipiIvviNKiDl~~a~-~~~v~~el~~~l-g~~ 156 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV-E----QDLVIIPVINKIDLPSAD-VDRVKKQIEEVL-GLD 156 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH-H----TTCEEEEEEECTTSTTCC-HHHHHHHHHHTS-CCC
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH-H----CCCCEEEEEeccCccccC-HHHHHHHHHHhh-CCC
Confidence 999988888999999999999999987766655554433 2 478999999999997643 333333332211 112
Q ss_pred ceEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030120 152 QWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 152 ~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
..+++++||++|.|+++++++|.+.++..
T Consensus 157 ~~~vi~vSAktg~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 157 PEEAILASAKEGIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp GGGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred cccEEEEEeecCCCchHHHHHHHHhcccc
Confidence 22489999999999999999999988754
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.6e-23 Score=157.85 Aligned_cols=158 Identities=20% Similarity=0.174 Sum_probs=108.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC--cc-----c-c----------cccccceeeEEEEC-----CEEEEEEECCCCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE--VV-----S-T----------IPTIGFNVETVQYN-----NIKFQVWDLGGQT 72 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~--~~-----~-~----------~~t~~~~~~~~~~~-----~~~~~~~D~~g~~ 72 (182)
+..+|+++|+.++|||||+++|+... +. . . ..|.......+.+. ...+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 46789999999999999999997521 11 0 0 01222223344443 3789999999999
Q ss_pred CCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCc
Q 030120 73 SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQ 152 (182)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 152 (182)
.+...+..+++.+|++++|+|++++.+.+....|.... . .+.|+++|+||+|+.... ..++...+.... ....
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~-~----~~ipiIvViNKiDl~~a~-~~~v~~ei~~~l-g~~~ 155 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM-E----MDLEVVPVLNKIDLPAAD-PERVAEEIEDIV-GIDA 155 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH-H----TTCEEEEEEECTTSTTCC-HHHHHHHHHHHT-CCCC
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEeeeccCccccc-HHHHHHHHHHHh-CCCc
Confidence 99999999999999999999999987766665554433 2 368999999999997653 333333332111 1112
Q ss_pred eEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030120 153 WAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 153 ~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
.+++++||++|.|+++++++|.+.++..
T Consensus 156 ~~vi~vSAktg~GI~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 156 TDAVRCSAKTGVGVQDVLERLVRDIPPP 183 (599)
T ss_dssp TTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred ceEEEeecccCCCchhHHHHHhhcCCCc
Confidence 2489999999999999999999988754
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-23 Score=158.62 Aligned_cols=152 Identities=21% Similarity=0.248 Sum_probs=102.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccccccccc----ceeeEEEECCEEEEEEECCC--------CCCCccchhhhcC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIG----FNVETVQYNNIKFQVWDLGG--------QTSIRPYWRCYFP 83 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~D~~g--------~~~~~~~~~~~~~ 83 (182)
...+|+++|.+|+|||||+|+|.+..+....++.+ .....+.+.+..+.+||||| ++.+...+..+++
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 101 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 101 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHh
Confidence 45799999999999999999999887654222222 33334444678999999999 4455566777889
Q ss_pred CCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCC
Q 030120 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
.+|++++|+|..++.+ ....++..++.. .+.|+++|+||+|+.+.. .. ......... ..++++||++|
T Consensus 102 ~ad~il~VvD~~~~~~--~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~--~~----~~e~~~lg~-~~~~~iSA~~g 169 (456)
T 4dcu_A 102 EADVIIFMVNGREGVT--AADEEVAKILYR---TKKPVVLAVNKLDNTEMR--AN----IYDFYSLGF-GEPYPISGTHG 169 (456)
T ss_dssp HCSEEEEEEESSSCSC--HHHHHHHHHHTT---CCSCEEEEEECC---------------CCSGGGSS-SSEEECCTTTC
T ss_pred hCCEEEEEEeCCCCCC--hHHHHHHHHHHH---cCCCEEEEEECccchhhh--hh----HHHHHHcCC-CceEEeecccc
Confidence 9999999999987633 444566666554 578999999999986331 11 111111111 13579999999
Q ss_pred CCHHHHHHHHHHHHhc
Q 030120 164 EGLFEGMDWLSNTLKS 179 (182)
Q Consensus 164 ~~v~~l~~~i~~~~~~ 179 (182)
.|+.++++.+.+.+..
T Consensus 170 ~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 170 LGLGDLLDAVAEHFKN 185 (456)
T ss_dssp TTHHHHHHHHHTTGGG
T ss_pred cchHHHHHHHHhhccc
Confidence 9999999999887753
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.6e-23 Score=156.89 Aligned_cols=153 Identities=18% Similarity=0.133 Sum_probs=102.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCc--cc--------------------------------ccccccceeeEEEEC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEV--VS--------------------------------TIPTIGFNVETVQYN 59 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~--~~--------------------------------~~~t~~~~~~~~~~~ 59 (182)
....++|+++|++|+|||||+++|++... .. ...|.......+...
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 35679999999999999999999975511 00 122444455556667
Q ss_pred CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHH-----HHHHHHHHHhccccCCCeEEEEEeCCCCCCCC
Q 030120 60 NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQT-----AKEEFHAILEEEELKGAVALIFANKQDLPGAL 134 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 134 (182)
+..+.+|||||++++...+..++..+|++++|+|++++.+... .......+.... ...|+++|+||+|+.+..
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~ 187 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWS 187 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTC
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccch
Confidence 8899999999999999999999999999999999998743221 122222222221 235699999999997532
Q ss_pred C--HHHHHHHhC----cccccCCceEEEEecCCCCCCHHH
Q 030120 135 D--DAAVSEALE----LHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 135 ~--~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
. .+++...+. ........++++++||++|.|+.+
T Consensus 188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 1 122222221 111122367899999999999874
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-23 Score=153.93 Aligned_cols=160 Identities=15% Similarity=0.087 Sum_probs=109.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC-------ccc------------ccccccceeeEEEECCEEEEEEECCCCCCCcc
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE-------VVS------------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP 76 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~-------~~~------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 76 (182)
..++|+++|++++|||||+++|.+.. +.. ...|++.....+......+.+|||||++.+..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 46899999999999999999998631 110 11122233333444678999999999999888
Q ss_pred chhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCCCCCH-H----HHHHHhCcccccC
Q 030120 77 YWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGALDD-A----AVSEALELHKIKN 150 (182)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~-~----~~~~~~~~~~~~~ 150 (182)
.+..++..+|++++|+|++++... ...+++..+ .. .+.| +++++||+|+.+.... + ++.+.+.......
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~-qt~e~l~~~-~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 156 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMP-QTREHLLLA-RQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG 156 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCH-HHHHHHHHH-HH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCH-HHHHHHHHH-HH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 888899999999999999987543 333344332 22 3677 7899999999742111 1 2222222111112
Q ss_pred CceEEEEecCCCCCC----------HHHHHHHHHHHHhcC
Q 030120 151 RQWAIFKTCAIKGEG----------LFEGMDWLSNTLKSG 180 (182)
Q Consensus 151 ~~~~~~~~Sa~~~~~----------v~~l~~~i~~~~~~~ 180 (182)
..++++++||++|.| +.++++.|.+.++..
T Consensus 157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p 196 (397)
T 1d2e_A 157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVP 196 (397)
T ss_dssp TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCC
T ss_pred ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCC
Confidence 346899999999764 899999999887643
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9e-23 Score=157.20 Aligned_cols=158 Identities=22% Similarity=0.194 Sum_probs=106.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccccc-----cccceeeEEE----------------ECCEEEEEEECCCCCCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIP-----TIGFNVETVQ----------------YNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~-----t~~~~~~~~~----------------~~~~~~~~~D~~g~~~~ 74 (182)
+..+|+++|++|+|||||++++.+..+....+ +.+....... +....+.+|||||++.+
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 46799999999999999999998765443222 2222211110 11236999999999999
Q ss_pred ccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--------------HH---
Q 030120 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--------------DA--- 137 (182)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--------------~~--- 137 (182)
...+..+++.+|++++|+|++++...+. ...+..+ .. .+.|+++++||+|+..... ..
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT-~e~l~~l-~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~ 158 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQT-QEALNIL-RM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQ 158 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHH-HHHHHHH-HH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhH-HHHHHHH-HH---cCCeEEEEecccccccccccccCCchHHHHHHhHHHHH
Confidence 9988888999999999999998532222 2222222 22 4789999999999964211 01
Q ss_pred --------HHHHHhCcccc----------cCCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 030120 138 --------AVSEALELHKI----------KNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 138 --------~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
++...+..... ....++++++||++|.|+++++++|...++
T Consensus 159 ~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 159 QKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 11111111000 134568999999999999999999998765
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.3e-23 Score=150.60 Aligned_cols=120 Identities=23% Similarity=0.366 Sum_probs=91.8
Q ss_pred CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCC----------CcccHHHHHHHHHHHHhccccCCCeEEEEEeCCC
Q 030120 60 NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS----------DTDRIQTAKEEFHAILEEEELKGAVALIFANKQD 129 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D 129 (182)
...+++|||+|++.++..|..++++++++|+|+|++ +..++.....|+..+.......+.|+++|+||+|
T Consensus 182 ~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~D 261 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 261 (354)
T ss_dssp --EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHH
T ss_pred ceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcc
Confidence 478999999999999999999999999999999998 7788999999999988766557899999999999
Q ss_pred CCCC----CC-------------------HHHHHHHhCccc------c--c---CCceEEEEecCCCCCCHHHHHHHHHH
Q 030120 130 LPGA----LD-------------------DAAVSEALELHK------I--K---NRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 130 ~~~~----~~-------------------~~~~~~~~~~~~------~--~---~~~~~~~~~Sa~~~~~v~~l~~~i~~ 175 (182)
+.+. .. .++......... . . ...+.+++|||+++.||+++|+.+.+
T Consensus 262 L~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~ 341 (354)
T 2xtz_A 262 IFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDE 341 (354)
T ss_dssp HHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred hhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHH
Confidence 8421 00 111111111100 0 0 23466799999999999999999988
Q ss_pred HHhc
Q 030120 176 TLKS 179 (182)
Q Consensus 176 ~~~~ 179 (182)
.+..
T Consensus 342 ~I~~ 345 (354)
T 2xtz_A 342 TLRR 345 (354)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.8e-24 Score=160.35 Aligned_cols=155 Identities=19% Similarity=0.166 Sum_probs=108.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccc--cccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
++..+|+++|++++|||||+++|.+..+.. ..+ |.......+.+++..+.+|||||++.+..++...+..+|++++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 467899999999999999999998755443 222 33333334444667899999999999999998899999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcc--ccc--CCceEEEEecCCCCCCHH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELH--KIK--NRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~Sa~~~~~v~ 167 (182)
+|++++... .....+... . ..+.|+++++||+|+.+... +++...+... ... ...++++++||++|.|++
T Consensus 82 Vda~~g~~~-qT~e~l~~~-~---~~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~ 155 (501)
T 1zo1_I 82 VAADDGVMP-QTIEAIQHA-K---AAQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVHVSAKAGTGID 155 (501)
T ss_dssp EETTTBSCT-TTHHHHHHH-H---HTTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCT
T ss_pred eecccCccH-HHHHHHHHH-H---hcCceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcc
Confidence 999885322 122222222 1 14689999999999964321 1121121111 001 124789999999999999
Q ss_pred HHHHHHHH
Q 030120 168 EGMDWLSN 175 (182)
Q Consensus 168 ~l~~~i~~ 175 (182)
+++++|..
T Consensus 156 eLle~I~~ 163 (501)
T 1zo1_I 156 ELLDAILL 163 (501)
T ss_dssp THHHHTTT
T ss_pred hhhhhhhh
Confidence 99999875
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.6e-23 Score=159.12 Aligned_cols=152 Identities=18% Similarity=0.145 Sum_probs=104.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc----------------------------------ccccccceeeEEEECC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS----------------------------------TIPTIGFNVETVQYNN 60 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~----------------------------------~~~t~~~~~~~~~~~~ 60 (182)
...++|+++|++|+|||||+++|++..... ...|.......+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 467899999999999999999998663211 1224445566677788
Q ss_pred EEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCccc------HHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC
Q 030120 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR------IQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL 134 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 134 (182)
..+.+|||||++.+...+..+++.+|++|+|+|++++.. .......+ .+.... ...|+++|+||+|+.+..
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l-~~~~~l--gi~~iIVVvNKiDl~~~~ 321 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHM-LLASSL--GIHNLIIAMNKMDNVDWS 321 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHH-HHHHTT--TCCEEEEEEECTTTTTTC
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHH-HHHHHc--CCCeEEEEEecccccchh
Confidence 899999999999999999999999999999999987420 01222221 222221 235699999999997532
Q ss_pred C--HHHHHHHh----CcccccCCceEEEEecCCCCCCHHHH
Q 030120 135 D--DAAVSEAL----ELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 135 ~--~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
. ..++...+ .........++++++||++|.|+.++
T Consensus 322 ~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 322 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 1 11122222 11111223578999999999999865
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.3e-23 Score=155.26 Aligned_cols=154 Identities=16% Similarity=0.194 Sum_probs=100.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC--Cccc--------------------------------ccccccceeeEEEECC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG--EVVS--------------------------------TIPTIGFNVETVQYNN 60 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~--~~~~--------------------------------~~~t~~~~~~~~~~~~ 60 (182)
...++|+++|++|+|||||+++|++. .+.. ...|++.....+....
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 45789999999999999999999864 2221 1124444455566678
Q ss_pred EEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHH---HHHHhccccCC-CeEEEEEeCCCCCCCC-C
Q 030120 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEF---HAILEEEELKG-AVALIFANKQDLPGAL-D 135 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~---~~~~~~~~~~~-~~iivv~nK~D~~~~~-~ 135 (182)
..+.+|||||++++...+..++..+|++++|+|+++ .+++....|. ...+......+ .|+++++||+|+.+.. .
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~ 162 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD 162 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence 899999999999999999999999999999999998 4454322211 11111111123 4689999999997531 1
Q ss_pred H---HHHHHHhC----cccccCCceEEEEecCCCCCCHHHH
Q 030120 136 D---AAVSEALE----LHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 136 ~---~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
. +++.+.+. ........++++++||++|.|+.++
T Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 163 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 1 12222221 1111122478999999999998743
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.5e-23 Score=146.57 Aligned_cols=158 Identities=15% Similarity=0.189 Sum_probs=88.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc--c-------cccccceeeEEEE--CC--EEEEEEECCCCCCC-------
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS--T-------IPTIGFNVETVQY--NN--IKFQVWDLGGQTSI------- 74 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~-------~~t~~~~~~~~~~--~~--~~~~~~D~~g~~~~------- 74 (182)
...++|+++|.+|+|||||+|++++..... . .+|++........ .+ ..+.+|||||....
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 347899999999999999999988766443 2 4566665555544 22 48999999997322
Q ss_pred ccch-------hhhc-------------CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC
Q 030120 75 RPYW-------RCYF-------------PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL 134 (182)
Q Consensus 75 ~~~~-------~~~~-------------~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 134 (182)
.... ..++ .++|+++++++............++..+ .. +.|+++|+||+|+....
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l-~~----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL-HE----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHH-TT----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHH-hc----cCCEEEEEeccCCCCHH
Confidence 2211 1222 2378999999877632222223333333 22 68999999999986432
Q ss_pred CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 030120 135 DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
........+.. .....+++++++||+++.|++++++.|.+.++
T Consensus 161 e~~~~~~~i~~-~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 161 ECQQFKKQIMK-EIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HHHHHHHHHHH-HHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred HHHHHHHHHHH-HHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 22222222211 11234566899999999999999999988654
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.3e-22 Score=137.93 Aligned_cols=161 Identities=13% Similarity=0.089 Sum_probs=100.3
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cc----ccccceeeEEEECCEEEEEEECCCCCC-----------Ccc
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TI----PTIGFNVETVQYNNIKFQVWDLGGQTS-----------IRP 76 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~----~t~~~~~~~~~~~~~~~~~~D~~g~~~-----------~~~ 76 (182)
.....++|+++|++|+|||||+|++++..+.. .. .|.......+.+.+..+.+|||||... +..
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 44678999999999999999999999987654 22 234455566777889999999999542 333
Q ss_pred chhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccc-cCCCeEEEEEeCCCCCCCCCHH--------HHHHHhCccc
Q 030120 77 YWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEE-LKGAVALIFANKQDLPGALDDA--------AVSEALELHK 147 (182)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~--------~~~~~~~~~~ 147 (182)
.+..+++.+|++++|+|+++... ....++..+..... ....|+++|+||+|+.+..... .+.....
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~~--~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~--- 179 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYTE--EEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD--- 179 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCSS--HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHH---
T ss_pred HHHhcCCCCcEEEEEeeCCCCCH--HHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHH---
Confidence 34556678899999999976533 22233333322111 1235899999999986543222 1111111
Q ss_pred ccCCceEEEEecCCCC-----CCHHHHHHHHHHHHhcC
Q 030120 148 IKNRQWAIFKTCAIKG-----EGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 148 ~~~~~~~~~~~Sa~~~-----~~v~~l~~~i~~~~~~~ 180 (182)
..+..++.+++..+ .++.++++.+.+.+.++
T Consensus 180 --~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~ 215 (239)
T 3lxx_A 180 --IFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVREN 215 (239)
T ss_dssp --HHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred --HcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence 11223555555533 68999999988877653
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=9.5e-23 Score=146.04 Aligned_cols=156 Identities=17% Similarity=0.166 Sum_probs=101.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-------cccc----------------------ccce-------------
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-------TIPT----------------------IGFN------------- 52 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-------~~~t----------------------~~~~------------- 52 (182)
....+|+++|.+|+|||||+|+|++..+.+ ..|+ +...
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 467799999999999999999999988642 1222 1100
Q ss_pred --------e--eE--EEE-CCEEEEEEECCCCCC-------------CccchhhhcCCCCeEE-EEEeCCCcccHHHHHH
Q 030120 53 --------V--ET--VQY-NNIKFQVWDLGGQTS-------------IRPYWRCYFPNTEAVI-YVVDSSDTDRIQTAKE 105 (182)
Q Consensus 53 --------~--~~--~~~-~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~d~ii-~v~d~~~~~s~~~~~~ 105 (182)
. .. +.. ....+.+|||||... +...+..+++.++.++ +|+|+++..+......
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 0 00 111 247899999999642 2345567788888766 7999987654433323
Q ss_pred HHHHHHhccccCCCeEEEEEeCCCCCCCCC-HHHHHHHhCcc-cccCCceEEEEecCCCCCCHHHHHHHHHHH
Q 030120 106 EFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELH-KIKNRQWAIFKTCAIKGEGLFEGMDWLSNT 176 (182)
Q Consensus 106 ~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 176 (182)
++..+ . ..+.|+++|+||+|+.+... ..+... ... .......+++++||++|.|++++++.+.+.
T Consensus 184 ~~~~~-~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~--~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 184 IAKEV-D---PQGQRTIGVITKLDLMDEGTDARDVLE--NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHH-C---TTCSSEEEEEECGGGSCTTCCCHHHHT--TCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHHh-C---CCCCeEEEEEEccccCCCCchHHHHHh--CCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 33333 2 24689999999999975432 112111 111 111123579999999999999999998763
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-22 Score=148.29 Aligned_cols=128 Identities=25% Similarity=0.349 Sum_probs=97.8
Q ss_pred eeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCC----------cccHHHHHHHHHHHHhccccCCCeE
Q 030120 52 NVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSD----------TDRIQTAKEEFHAILEEEELKGAVA 121 (182)
Q Consensus 52 ~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~i 121 (182)
....+.+.+..+++|||+|++.++..|..++++++++|+|+|+++ ..++.....|+..+.......+.|+
T Consensus 208 ~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pi 287 (402)
T 1azs_C 208 FETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISV 287 (402)
T ss_dssp EEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCE
T ss_pred EEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeE
Confidence 334455577899999999999999999999999999999999999 8899999999999987655578999
Q ss_pred EEEEeCCCCCCC-----C------------------------C---HHHHHHHhCccc--------ccCCceEEEEecCC
Q 030120 122 LIFANKQDLPGA-----L------------------------D---DAAVSEALELHK--------IKNRQWAIFKTCAI 161 (182)
Q Consensus 122 ivv~nK~D~~~~-----~------------------------~---~~~~~~~~~~~~--------~~~~~~~~~~~Sa~ 161 (182)
++|+||+|+.+. . . ..+......... .....+.+++|||+
T Consensus 288 iLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~ 367 (402)
T 1azs_C 288 ILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAV 367 (402)
T ss_dssp EEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTT
T ss_pred EEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEee
Confidence 999999998321 0 0 011111110000 01135778999999
Q ss_pred CCCCHHHHHHHHHHHHhc
Q 030120 162 KGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 162 ~~~~v~~l~~~i~~~~~~ 179 (182)
++.||+++|+.+.+.+..
T Consensus 368 d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 368 DTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHHHHH
Confidence 999999999998887653
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.1e-23 Score=156.47 Aligned_cols=154 Identities=15% Similarity=0.190 Sum_probs=90.8
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcC--Ccc--------------------------------cccccccceeeEEEE
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMG--EVV--------------------------------STIPTIGFNVETVQY 58 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~--~~~--------------------------------~~~~t~~~~~~~~~~ 58 (182)
.....++|+++|++++|||||+++|+.. .+. ....|++.....+..
T Consensus 39 ~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~ 118 (467)
T 1r5b_A 39 YGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET 118 (467)
T ss_dssp SCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC
T ss_pred cCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec
Confidence 4467789999999999999999999642 111 012344455556666
Q ss_pred CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcc---cHH---HHHHHHHHHHhccccCCCe-EEEEEeCCCCC
Q 030120 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD---RIQ---TAKEEFHAILEEEELKGAV-ALIFANKQDLP 131 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~ 131 (182)
.+..+.+|||||++.+...+..++..+|++|+|+|++++. +|+ .....+... . ..+.| +++++||+|+.
T Consensus 119 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~-~---~~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 119 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLA-R---TQGINHLVVVINKMDEP 194 (467)
T ss_dssp SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH-H---HTTCSSEEEEEECTTST
T ss_pred CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHH-H---HcCCCEEEEEEECccCC
Confidence 7899999999999999988888999999999999999862 111 122222211 1 13566 99999999996
Q ss_pred CCC-CH---HH----HHHHhCcc-ccc-CCceEEEEecCCCCCCHHHHH
Q 030120 132 GAL-DD---AA----VSEALELH-KIK-NRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 132 ~~~-~~---~~----~~~~~~~~-~~~-~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
+.. .. ++ +...+... ... ...++++++||++|.|+.+++
T Consensus 195 ~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 195 SVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 422 11 11 22222111 000 125789999999999988654
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.1e-24 Score=164.97 Aligned_cols=162 Identities=20% Similarity=0.200 Sum_probs=90.4
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcc----------------------------------cccccccceeeEEEE
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVV----------------------------------STIPTIGFNVETVQY 58 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~----------------------------------~~~~t~~~~~~~~~~ 58 (182)
.....++|+++|++|+|||||+++|++.... ....|.......+..
T Consensus 173 ~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~ 252 (592)
T 3mca_A 173 NPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES 252 (592)
T ss_dssp CCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC------------------------------------------------
T ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe
Confidence 3456789999999999999999999642100 011133344444555
Q ss_pred CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcc---cH---HHHHHHHHHHHhccccCCCe-EEEEEeCCCCC
Q 030120 59 NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD---RI---QTAKEEFHAILEEEELKGAV-ALIFANKQDLP 131 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~ 131 (182)
.+..+.+|||||++.+...+..++..+|++|+|+|++++. .+ ......+. ++.. .+.| +++|+||+|+.
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~-~~~~---lgip~iIvviNKiDl~ 328 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAY-LLRA---LGISEIVVSVNKLDLM 328 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHH-HHHH---SSCCCEEEEEECGGGG
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHH-HHHH---cCCCeEEEEEeccccc
Confidence 6789999999999999988888999999999999998642 11 11222222 2222 2454 99999999996
Q ss_pred CCCC--HH----HHHHHh-CcccccCCceEEEEecCCCCCCHH--------------HHHHHHHHHHh
Q 030120 132 GALD--DA----AVSEAL-ELHKIKNRQWAIFKTCAIKGEGLF--------------EGMDWLSNTLK 178 (182)
Q Consensus 132 ~~~~--~~----~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~v~--------------~l~~~i~~~~~ 178 (182)
+... .. ++...+ .........++++++||++|.|+. .|++.|...++
T Consensus 329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 5221 11 222222 211222235789999999999997 68887766543
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.3e-21 Score=145.89 Aligned_cols=114 Identities=18% Similarity=0.194 Sum_probs=84.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC--cc------------c-----------ccccccceeeEEEECCEEEEEEECC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGE--VV------------S-----------TIPTIGFNVETVQYNNIKFQVWDLG 69 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~--~~------------~-----------~~~t~~~~~~~~~~~~~~~~~~D~~ 69 (182)
.+..+|+++|++|+|||||+++|+... +. . ...|.......+.+.+..+.+||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 457899999999999999999998631 10 0 0112233445567788999999999
Q ss_pred CCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 70 GQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
|+..+...+..+++.+|++++|+|+.++... .....+... ...+.|+++++||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~-~t~~~~~~~----~~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVED-RTRKLMEVT----RLRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCH-HHHHHHHHH----TTTTCCEEEEEECTTSCCS
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchH-HHHHHHHHH----HHcCCCEEEEEcCcCCccc
Confidence 9999988888899999999999999987432 222222222 2247899999999999754
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.86 E-value=8.1e-22 Score=148.45 Aligned_cols=150 Identities=13% Similarity=0.123 Sum_probs=102.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC--Cccc--------------------------------ccccccceeeEEEECC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG--EVVS--------------------------------TIPTIGFNVETVQYNN 60 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~--~~~~--------------------------------~~~t~~~~~~~~~~~~ 60 (182)
...++|+++|++|+|||||+++|++. .+.. ...|++.....+....
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 45689999999999999999999864 1110 1234555556666788
Q ss_pred EEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCccc---HH---HHHHHHHHHHhccccCCC-eEEEEEeCCCCCCC
Q 030120 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDR---IQ---TAKEEFHAILEEEELKGA-VALIFANKQDLPGA 133 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~-~iivv~nK~D~~~~ 133 (182)
..+.+|||||++.+...+..++..+|++++|+|++++.. |+ .....+... .. .+. ++++++||+|+.+.
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~-~~---~~v~~iivviNK~Dl~~~ 160 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA-FT---LGVRQLIVAVNKMDSVKW 160 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-HH---TTCCEEEEEEECGGGGTT
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHH-HH---cCCCeEEEEEEccccccC
Confidence 999999999999999989999999999999999987631 11 222222222 22 345 49999999999732
Q ss_pred CCH--HHHHHHhC----cccccCCceEEEEecCCCCCCHHH
Q 030120 134 LDD--AAVSEALE----LHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 134 ~~~--~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
... +++...+. ........++++++||++|.|+.+
T Consensus 161 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 161 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence 111 12222221 111111246899999999999864
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.86 E-value=7.5e-22 Score=159.15 Aligned_cols=161 Identities=17% Similarity=0.139 Sum_probs=109.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC-------ccc------------ccccccceeeEEEECCEEEEEEECCCCCCC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGE-------VVS------------TIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~-------~~~------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 74 (182)
....++|+++|++++|||||+++|.+.. +.. ...|+......+......+.+|||||++.+
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 3567899999999999999999998631 000 011222222334446789999999999999
Q ss_pred ccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCCCCCH-H----HHHHHhCcccc
Q 030120 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGALDD-A----AVSEALELHKI 148 (182)
Q Consensus 75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~-~----~~~~~~~~~~~ 148 (182)
...+..++..+|++|+|+|++++... ...+++..+. . .++| +++++||+|+.+.... + ++.+.+.....
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~-~---lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~ 447 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGR-Q---VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF 447 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHH-H---HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHH-H---cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence 88888899999999999999987532 3344443332 2 2577 8999999999752111 1 12222221111
Q ss_pred cCCceEEEEecCCCC--------CCHHHHHHHHHHHHhc
Q 030120 149 KNRQWAIFKTCAIKG--------EGLFEGMDWLSNTLKS 179 (182)
Q Consensus 149 ~~~~~~~~~~Sa~~~--------~~v~~l~~~i~~~~~~ 179 (182)
....++++++||++| .|+.++++.|.+.++.
T Consensus 448 ~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~ 486 (1289)
T 3avx_A 448 PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPE 486 (1289)
T ss_dssp CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred cccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCC
Confidence 223578999999999 4689999999887654
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.86 E-value=8e-21 Score=149.14 Aligned_cols=114 Identities=23% Similarity=0.160 Sum_probs=86.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC--Ccc-------------------cccccccceeeEEEECCEEEEEEECCCCCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG--EVV-------------------STIPTIGFNVETVQYNNIKFQVWDLGGQTS 73 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~--~~~-------------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 73 (182)
.+..+|+|+|++|+|||||+++|+.. .+. ....|+......+.+.+..+.+|||||+..
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 56789999999999999999999831 110 123345555666777889999999999999
Q ss_pred CccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
+...+..+++.+|++++|+|+.++.+......| ..... .+.|+++|+||+|+...
T Consensus 90 f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~-~~~~~----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 90 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAEK----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHH----TTCCEEEEEECTTSTTC
T ss_pred hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHH-HHHHH----cCCCEEEEEECCCcccC
Confidence 999999999999999999999998766555433 33322 47899999999999754
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.6e-21 Score=130.57 Aligned_cols=162 Identities=15% Similarity=0.130 Sum_probs=99.1
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEECCEEEEEEECCCCCCC----------ccch
Q 030120 12 LFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNNIKFQVWDLGGQTSI----------RPYW 78 (182)
Q Consensus 12 ~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~~~~~~~D~~g~~~~----------~~~~ 78 (182)
.......+++++|++|+|||||++++.+..+.. ..++.+.. ...+.+.+ .+.+|||||.... ....
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 345678899999999999999999999877432 33433322 22333333 6789999997532 1122
Q ss_pred hhhc---CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHH-HHHHhCcccccCCceE
Q 030120 79 RCYF---PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAA-VSEALELHKIKNRQWA 154 (182)
Q Consensus 79 ~~~~---~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~ 154 (182)
..++ ..++++++++|+.++.+.... .+..++.. .+.|++++.||+|+.+....+. +.............+.
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~ 174 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQ 174 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHHH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCc
Confidence 2333 578999999999987654321 12222222 4688999999999864321111 1111111111223567
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHhc
Q 030120 155 IFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 155 ~~~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
++++||+++.|++++++.|.+.+.+
T Consensus 175 ~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 175 VETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred eEEEeecCCCCHHHHHHHHHHHHhh
Confidence 8999999999999999999887654
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.7e-20 Score=145.42 Aligned_cols=116 Identities=22% Similarity=0.215 Sum_probs=87.9
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhc--CCccc-------------------ccccccceeeEEEECCEEEEEEECCCC
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQM--GEVVS-------------------TIPTIGFNVETVQYNNIKFQVWDLGGQ 71 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~--~~~~~-------------------~~~t~~~~~~~~~~~~~~~~~~D~~g~ 71 (182)
...+..+|+++|++|+|||||+++|+. +.+.. ...|.......+.+.+..+.+|||||+
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 85 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGH 85 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCC
Confidence 346788999999999999999999984 22110 112334445566778899999999999
Q ss_pred CCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 72 TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
..+...+..+++.+|++++|+|+.++.+..... .+..+.. .+.|+++|+||+|+...
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~-~~~~~~~----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTET-VWRQATT----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHH-HHHHHHH----TTCCEEEEEECTTSTTC
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHH-HHHHHHH----cCCCEEEEEECCCcccc
Confidence 999988999999999999999999887655444 3333322 47899999999999764
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5e-20 Score=144.17 Aligned_cols=113 Identities=15% Similarity=0.174 Sum_probs=84.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc--------------c-------ccccccceeeEEEECCEEEEEEECCCCC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVV--------------S-------TIPTIGFNVETVQYNNIKFQVWDLGGQT 72 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~--------------~-------~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 72 (182)
.++..+++++|+.|+|||||++++++.... . ...+.......+.+....+.+|||||+.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 456789999999999999999999843221 0 0112233444556678999999999999
Q ss_pred CCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q 030120 73 SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 131 (182)
.+...+..+++.+|++++|+|+.++.... ...++..... .+.|+++++||+|+.
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH----ccCCEEEEecCCchh
Confidence 99888888999999999999998775432 3344444432 478999999999987
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-20 Score=136.50 Aligned_cols=161 Identities=18% Similarity=0.208 Sum_probs=98.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-------cccc---ccce--------------------------------
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-------TIPT---IGFN-------------------------------- 52 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-------~~~t---~~~~-------------------------------- 52 (182)
....+|+|+|.+|+|||||+|+|++..+.+ ..|+ +...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 456799999999999999999999987622 1110 0000
Q ss_pred ------------------eeEEEE---CCEEEEEEECCCCCC-------------CccchhhhcCCCCeEEEEEeCCCcc
Q 030120 53 ------------------VETVQY---NNIKFQVWDLGGQTS-------------IRPYWRCYFPNTEAVIYVVDSSDTD 98 (182)
Q Consensus 53 ------------------~~~~~~---~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (182)
...+.+ ...++.+|||||... +...+..++..+|++++|+|..+..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 000111 346899999999754 3344567788999999999984332
Q ss_pred cHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCccccc--CCceEEEEecCCC---CCCHHHHHHHH
Q 030120 99 RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIK--NRQWAIFKTCAIK---GEGLFEGMDWL 173 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~---~~~v~~l~~~i 173 (182)
........+...+.. .+.|+++|+||+|+.+.... ..+........ ...+++..+|+.+ +.|+.++++.+
T Consensus 182 ~~~~~~~~i~~~~~~---~~~~~i~v~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~ 256 (315)
T 1jwy_B 182 LANSDALQLAKEVDP---EGKRTIGVITKLDLMDKGTD--AMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSE 256 (315)
T ss_dssp STTCSHHHHHHHHCS---SCSSEEEEEECTTSSCSSCC--CHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHH
T ss_pred hhhhHHHHHHHHhCC---CCCcEEEEEcCcccCCcchH--HHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHH
Confidence 111111122222222 46899999999999754331 11222211111 2233455555555 78999999999
Q ss_pred HHHHhcC
Q 030120 174 SNTLKSG 180 (182)
Q Consensus 174 ~~~~~~~ 180 (182)
.+.++..
T Consensus 257 ~~~~~~~ 263 (315)
T 1jwy_B 257 ILYFKNH 263 (315)
T ss_dssp HHHHHTC
T ss_pred HHHHhCC
Confidence 8888754
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-20 Score=147.97 Aligned_cols=161 Identities=21% Similarity=0.242 Sum_probs=106.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc--cccccc-cee--------eEEE--------------------------
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIG-FNV--------ETVQ-------------------------- 57 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t~~-~~~--------~~~~-------------------------- 57 (182)
...++|+|+|.+|+|||||+|+|++..+.+ ..|++. +.. ....
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 567899999999999999999999987544 333331 000 0110
Q ss_pred --------------------ECC----EEEEEEECCCCCC---CccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHH
Q 030120 58 --------------------YNN----IKFQVWDLGGQTS---IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAI 110 (182)
Q Consensus 58 --------------------~~~----~~~~~~D~~g~~~---~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~ 110 (182)
+.. ..+.+|||||... ....+..+++.+|++++|+|++++.+......|. ..
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~-~~ 225 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLE-NY 225 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHH-HH
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHH-HH
Confidence 100 3689999999543 3455667889999999999999887665554332 22
Q ss_pred HhccccCCCeEEEEEeCCCCCCCC-----CHH-------HHHHH----hCcccc----cCCceEEEEecCC---------
Q 030120 111 LEEEELKGAVALIFANKQDLPGAL-----DDA-------AVSEA----LELHKI----KNRQWAIFKTCAI--------- 161 (182)
Q Consensus 111 ~~~~~~~~~~iivv~nK~D~~~~~-----~~~-------~~~~~----~~~~~~----~~~~~~~~~~Sa~--------- 161 (182)
+.. .+.|+++|+||+|+.... ... .+... +..... .....+++++||+
T Consensus 226 l~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~ 302 (695)
T 2j69_A 226 IKG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKN 302 (695)
T ss_dssp TTT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHC
T ss_pred HHh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccC
Confidence 222 357899999999985331 100 12111 111000 0123469999999
Q ss_pred -----CCCCHHHHHHHHHHHHhc
Q 030120 162 -----KGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 162 -----~~~~v~~l~~~i~~~~~~ 179 (182)
++.|++++++.+.+.+..
T Consensus 303 ~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 303 PQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp TTCCCTTSSHHHHHHHHHHHHHH
T ss_pred chhhhhccCHHHHHHHHHHHHHH
Confidence 999999999999887654
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.4e-20 Score=129.04 Aligned_cols=117 Identities=15% Similarity=0.106 Sum_probs=82.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc--ccc--cccceeeEEEECCEEEEEEECCCCCCCccchhhhcC-------
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFP------- 83 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~------- 83 (182)
.+.++|+++|.+|+|||||+|++++..+.. ..+ |.......+.+.+..+.+|||||+..+......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~ 113 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV 113 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence 478999999999999999999999988533 222 344555666778899999999999877555433332
Q ss_pred --CCCeEEEEEeCCCcccHHHHHHHHHHHHhccc-cCCCeEEEEEeCCCCC
Q 030120 84 --NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEE-LKGAVALIFANKQDLP 131 (182)
Q Consensus 84 --~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~ 131 (182)
.+|++++|++++..........++..+..... ....|+++|+||+|+.
T Consensus 114 ~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 114 NRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp TCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred cCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 78999999998765422222344444433211 1124899999999995
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.83 E-value=2.4e-19 Score=140.98 Aligned_cols=115 Identities=17% Similarity=0.083 Sum_probs=85.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC--ccc-------------------ccccccceeeEEEECC-------EEEEE
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGE--VVS-------------------TIPTIGFNVETVQYNN-------IKFQV 65 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~--~~~-------------------~~~t~~~~~~~~~~~~-------~~~~~ 65 (182)
..+..+|+|+|+.|+|||||+++|+... +.. ...|+......+.+.+ ..+.+
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 4677899999999999999999997431 110 1113333334455555 89999
Q ss_pred EECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 66 WDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 66 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
|||||+..+...+..+++.+|++++|+|++++....... .+..... .+.|+++|+||+|+...
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~-~~~~~~~----~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSET-VWRQANK----YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHH-HHHHHHH----cCCCEEEEEeCCCcccc
Confidence 999999999888999999999999999999875543333 3333322 47899999999998654
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.8e-21 Score=140.74 Aligned_cols=157 Identities=15% Similarity=0.242 Sum_probs=78.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc--c--------cccccceeeEEEE--CC--EEEEEEECCCC-------CC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS--T--------IPTIGFNVETVQY--NN--IKFQVWDLGGQ-------TS 73 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~--------~~t~~~~~~~~~~--~~--~~~~~~D~~g~-------~~ 73 (182)
...++|+++|++|+|||||+++|++..... . .+|.+........ .+ ..+.+|||||+ +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 567899999999999999999987654322 1 1343333322222 33 47899999998 55
Q ss_pred Cccchh-------hhcC-------------CCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 74 IRPYWR-------CYFP-------------NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 74 ~~~~~~-------~~~~-------------~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
+...+. .+++ ++|+++|+++.. ..++......+...+. .+.|+++|+||+|+...
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH----NKVNIVPVIAKADTLTL 189 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC----S-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc----cCCCEEEEEECCCCCCH
Confidence 555544 3332 234566666652 2224444432222222 47899999999998653
Q ss_pred CCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 030120 134 LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
.......... .......+++++++||+++.+ ++.|..+.+.+.
T Consensus 190 ~ev~~~k~~i-~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~ 232 (361)
T 2qag_A 190 KERERLKKRI-LDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLK 232 (361)
T ss_dssp HHHHHHHHHH-HHHTTCC-CCSCCCC----------CHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHH
Confidence 2111111111 122234567899999999988 666666665543
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-19 Score=132.94 Aligned_cols=157 Identities=21% Similarity=0.265 Sum_probs=107.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECC-EEEEEEECCCCCCC-------ccchhhhcCCCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNN-IKFQVWDLGGQTSI-------RPYWRCYFPNTE 86 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~-------~~~~~~~~~~~d 86 (182)
..++++|++|+|||||++.+.+..... ...|...+...+.+.. ..+.+||+||.... ..........++
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 468999999999999999998875321 2223445555566654 78999999997432 111223356799
Q ss_pred eEEEEEeCCCcccHHHHHHHHHHHHhcc-ccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCC
Q 030120 87 AVIYVVDSSDTDRIQTAKEEFHAILEEE-ELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
.++.++|++ ...+.....+..+..... .....|.++++||+|+... ..+...... ....+++++.+||++++|
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~---~~~~~l~~~--l~~~g~~vi~iSA~~g~g 311 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE---EAVKALADA--LAREGLAVLPVSALTGAG 311 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH---HHHHHHHHH--HHTTTSCEEECCTTTCTT
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH---HHHHHHHHH--HHhcCCeEEEEECCCccC
Confidence 999999998 555666665555554321 1235789999999998643 222211111 122345799999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 030120 166 LFEGMDWLSNTLKSG 180 (182)
Q Consensus 166 v~~l~~~i~~~~~~~ 180 (182)
++++++.|.+.+.+.
T Consensus 312 i~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 312 LPALKEALHALVRST 326 (416)
T ss_dssp HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988754
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-18 Score=132.00 Aligned_cols=114 Identities=14% Similarity=0.185 Sum_probs=87.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC------------------ccc-------ccccccceeeEEEECCEEEEEEECC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGE------------------VVS-------TIPTIGFNVETVQYNNIKFQVWDLG 69 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~------------------~~~-------~~~t~~~~~~~~~~~~~~~~~~D~~ 69 (182)
.+.-+|+|+|+.++|||||..+|+... +.. ..-|+......+.|++..+.++|||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence 356799999999999999999996211 111 1124455667788899999999999
Q ss_pred CCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 70 GQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
||.+|.......++-+|++++|+|+..+--. +....|..... .++|.++++||+|....
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~-qT~~v~~~a~~----~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEA-QTRKLMDVCRM----RATPVMTFVNKMDREAL 167 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCH-HHHHHHHHHHH----TTCCEEEEEECTTSCCC
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCccc-ccHHHHHHHHH----hCCceEEEEecccchhc
Confidence 9999999999999999999999999988543 33344444443 47999999999998654
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.1e-18 Score=121.78 Aligned_cols=118 Identities=14% Similarity=0.090 Sum_probs=79.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc--ccc--cccceeeEEEECCEEEEEEECCCCCCCccchh-------hh--
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPYWR-------CY-- 81 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~-------~~-- 81 (182)
...++|+++|.+|+|||||+|++++..+.. ..+ |.......+...+..+.+|||||+..+..... .+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 468999999999999999999999988643 222 22233444556888999999999876543221 12
Q ss_pred cCCCCeEEEEEeCCCcccHHHH-HHHHHHHHhccc-cCCCeEEEEEeCCCCCCC
Q 030120 82 FPNTEAVIYVVDSSDTDRIQTA-KEEFHAILEEEE-LKGAVALIFANKQDLPGA 133 (182)
Q Consensus 82 ~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~ 133 (182)
...+|++++|+|++... +... ..++..+....+ ....|+++|+||+|+.+.
T Consensus 117 ~~~~d~il~v~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAYR-VDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TCEECEEEEEEESSCCC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred cCCCCEEEEEEeCCCCc-CCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 34689999999986532 3322 344444433211 012699999999998643
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.79 E-value=8.9e-20 Score=133.38 Aligned_cols=155 Identities=17% Similarity=0.149 Sum_probs=95.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-------cccc----------------------ccce-------------
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-------TIPT----------------------IGFN------------- 52 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-------~~~t----------------------~~~~------------- 52 (182)
....+|+++|.+|+|||||+|+|++..+.+ ..|+ +++.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 456799999999999999999999988642 1122 1110
Q ss_pred ----------e--eEEEE-CCEEEEEEECCCCCC-------------CccchhhhcCCCC-eEEEEEeCCCcccHHHHHH
Q 030120 53 ----------V--ETVQY-NNIKFQVWDLGGQTS-------------IRPYWRCYFPNTE-AVIYVVDSSDTDRIQTAKE 105 (182)
Q Consensus 53 ----------~--~~~~~-~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~~ 105 (182)
. ..+.. ....+.+|||||... +..+...++..++ ++++++|++..........
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 0 01111 246899999999532 2334556665554 5555667665432222222
Q ss_pred HHHHHHhccccCCCeEEEEEeCCCCCCCCC-HHHHHHHhCcccc-cCCceEEEEecCCCCCCHHHHHHHHHH
Q 030120 106 EFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKI-KNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 106 ~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 175 (182)
++..+ ...+.|+++|+||+|+.+... ...... ..... .....+++++||+++.|++++++.+.+
T Consensus 189 i~~~~----~~~~~~~i~V~NK~Dl~~~~~~~~~~~~--~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 VAKEV----DPQGQRTIGVITKLDLMDEGTDARDVLE--NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHH----CTTCTTEEEEEECGGGSCTTCCCHHHHT--TCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHh----CcCCCceEEEeccccccCcchhHHHHHh--CCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 22222 224689999999999975432 122211 11111 122357899999999999999998876
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.8e-20 Score=137.46 Aligned_cols=80 Identities=29% Similarity=0.302 Sum_probs=48.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccc--cccceeeEEE---------------------EC---CEEEEEEECCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQ---------------------YN---NIKFQVWDLGG 70 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~--t~~~~~~~~~---------------------~~---~~~~~~~D~~g 70 (182)
++|+++|.+|+|||||+|++.+..... ..| |...+..... +. ..++.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 589999999999999999999877321 222 3333333221 11 36799999999
Q ss_pred CCCC----ccc---hhhhcCCCCeEEEEEeCCCc
Q 030120 71 QTSI----RPY---WRCYFPNTEAVIYVVDSSDT 97 (182)
Q Consensus 71 ~~~~----~~~---~~~~~~~~d~ii~v~d~~~~ 97 (182)
.... ... ....++.+|++++|+|+.+.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7531 212 23457899999999999875
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-19 Score=132.82 Aligned_cols=150 Identities=18% Similarity=0.224 Sum_probs=94.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcccccc-ccc---------------------------------------------
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVSTIP-TIG--------------------------------------------- 50 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~-t~~--------------------------------------------- 50 (182)
-.+|+++|++|+|||||+|++.+..+.+... +..
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR 113 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence 3499999999999999999999987633111 110
Q ss_pred -------c--eeeEEEE---CCEEEEEEECCCCCCC-------------ccchhhhcCCCCeEEEEEeCCCcccHHHHHH
Q 030120 51 -------F--NVETVQY---NNIKFQVWDLGGQTSI-------------RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKE 105 (182)
Q Consensus 51 -------~--~~~~~~~---~~~~~~~~D~~g~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~ 105 (182)
+ ....+.. ....+.+|||||.... ......++.++|++++++|..+.+.....
T Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~-- 191 (360)
T 3t34_A 114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSD-- 191 (360)
T ss_dssp TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCH--
T ss_pred hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHH--
Confidence 0 0001111 2457899999997765 45567788999999999987654332211
Q ss_pred HHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHH
Q 030120 106 EFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 106 ~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 172 (182)
+ ..++......+.|+++|+||+|+.+..... .+... ......+.+++.+|++++.++++.+..
T Consensus 192 ~-~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~--~~~~~-~~~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 192 A-IKISREVDPSGDRTFGVLTKIDLMDKGTDA--VEILE-GRSFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp H-HHHHHHSCTTCTTEEEEEECGGGCCTTCCS--HHHHT-TSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred H-HHHHHHhcccCCCEEEEEeCCccCCCcccH--HHHHc-CccccccCCeEEEEECChHHhccCCCH
Confidence 1 222233333467999999999997542211 11111 112334567899999998877765443
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.8e-19 Score=130.80 Aligned_cols=154 Identities=16% Similarity=0.146 Sum_probs=95.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC------Ccc--cccccccc-------------------eeeE-----------
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMG------EVV--STIPTIGF-------------------NVET----------- 55 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~------~~~--~~~~t~~~-------------------~~~~----------- 55 (182)
..+...|+++|.+|+|||||++.|... .+. ...++... ....
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~ 155 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGG 155 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccc
Confidence 356789999999999999999999532 111 01110000 0000
Q ss_pred -----------EEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEE
Q 030120 56 -----------VQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIF 124 (182)
Q Consensus 56 -----------~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv 124 (182)
+...+.++.+|||||... ........+|++++|+|+...+...... ......|+++|
T Consensus 156 ~~~~t~d~i~~~~~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~---------~~~~~~p~ivV 223 (355)
T 3p32_A 156 VTRATRETVVLLEAAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK---------KGVLELADIVV 223 (355)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC---------TTSGGGCSEEE
T ss_pred hhHHHHHHHHHHhhCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH---------HhHhhcCCEEE
Confidence 012467899999999433 3334458899999999987665432111 11124689999
Q ss_pred EeCCCCCCCCCHHHHHHHhCc----ccc--cCCceEEEEecCCCCCCHHHHHHHHHHHHhc
Q 030120 125 ANKQDLPGALDDAAVSEALEL----HKI--KNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 125 ~nK~D~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
+||+|+............+.. ... .....+++++||++|.|+++++++|.+.+..
T Consensus 224 lNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 224 VNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp EECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred EECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 999998543121111111211 100 1224579999999999999999999987653
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-18 Score=138.04 Aligned_cols=120 Identities=16% Similarity=0.118 Sum_probs=87.9
Q ss_pred HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCC------------ccc-------ccccccceeeEEEEC------
Q 030120 5 FSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGE------------VVS-------TIPTIGFNVETVQYN------ 59 (182)
Q Consensus 5 ~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~------------~~~-------~~~t~~~~~~~~~~~------ 59 (182)
+.++++ ...+..+|+|+|++|+|||||+++|+... +.. ...|+......+.+.
T Consensus 9 ~~~~m~--~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~ 86 (842)
T 1n0u_A 9 MRSLMD--KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDV 86 (842)
T ss_dssp HHHHHH--CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHH
T ss_pred HHHHhh--CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEeccccccc
Confidence 344443 23567899999999999999999998641 110 111333333344443
Q ss_pred ----------CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCC
Q 030120 60 ----------NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQD 129 (182)
Q Consensus 60 ----------~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D 129 (182)
+..+.+|||||+.++...+..+++.+|++++|+|+.++.+.+....|. .... .+.|+++|+||+|
T Consensus 87 ~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~----~~~p~ilviNK~D 161 (842)
T 1n0u_A 87 KEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLR-QALG----ERIKPVVVINKVD 161 (842)
T ss_dssp HHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHH-HHHH----TTCEEEEEEECHH
T ss_pred ccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH----cCCCeEEEEECCC
Confidence 678999999999999999999999999999999999987776654333 3322 4789999999999
Q ss_pred CC
Q 030120 130 LP 131 (182)
Q Consensus 130 ~~ 131 (182)
+.
T Consensus 162 ~~ 163 (842)
T 1n0u_A 162 RA 163 (842)
T ss_dssp HH
T ss_pred cc
Confidence 85
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-17 Score=120.71 Aligned_cols=152 Identities=17% Similarity=0.130 Sum_probs=88.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC------Cc--ccccccccc--------------------ee-------eE----
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG------EV--VSTIPTIGF--------------------NV-------ET---- 55 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~------~~--~~~~~t~~~--------------------~~-------~~---- 55 (182)
.....|+++|++|+|||||+|.+.+. .+ ....++... .. ..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~ 151 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV 151 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence 34789999999999999999999852 11 011111000 00 00
Q ss_pred ----------EEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEE
Q 030120 56 ----------VQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFA 125 (182)
Q Consensus 56 ----------~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~ 125 (182)
+...+.++.++||||.... .......+|++++|+|+..+........ .+ ...|.++|+
T Consensus 152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVl 219 (349)
T 2www_A 152 TRTTNEAILLCEGAGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAV 219 (349)
T ss_dssp CTTHHHHHHHHHHTTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEE
T ss_pred hHHHHHHHHhhccCCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEE
Confidence 0124678899999995322 2445678999999999987642211111 11 245789999
Q ss_pred eCCCCCCCCCH----HHHHHHhCcccc--cCCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 030120 126 NKQDLPGALDD----AAVSEALELHKI--KNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 126 nK~D~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
||+|+.+.... ..+...+..... .....+++++||++|.|+++++++|.+.+.
T Consensus 220 NK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 220 TKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp CCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred eeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 99998532111 112111221111 112357899999999999999999988653
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.5e-18 Score=131.09 Aligned_cols=115 Identities=22% Similarity=0.250 Sum_probs=79.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc----cccccccceeeEE----------------------------------
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVV----STIPTIGFNVETV---------------------------------- 56 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~----~~~~t~~~~~~~~---------------------------------- 56 (182)
....+|+|+|.+|+|||||+|+|++..+. ...+++.......
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 45689999999999999999999998863 2333332111000
Q ss_pred ----EECC---EEEEEEECCCCCC-----------CccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCC
Q 030120 57 ----QYNN---IKFQVWDLGGQTS-----------IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKG 118 (182)
Q Consensus 57 ----~~~~---~~~~~~D~~g~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 118 (182)
.+.. ..+.+|||||... +...+..++..+|++++|+|+++.........++..+. . .+
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~-~---~~ 218 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR-G---HE 218 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT-T---CG
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH-h---cC
Confidence 0000 3689999999764 33455667888999999999988544444454544432 2 35
Q ss_pred CeEEEEEeCCCCCCC
Q 030120 119 AVALIFANKQDLPGA 133 (182)
Q Consensus 119 ~~iivv~nK~D~~~~ 133 (182)
.|+++|+||+|+.+.
T Consensus 219 ~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 219 DKIRVVLNKADMVET 233 (550)
T ss_dssp GGEEEEEECGGGSCH
T ss_pred CCEEEEEECCCccCH
Confidence 789999999998754
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.72 E-value=7e-18 Score=131.58 Aligned_cols=158 Identities=21% Similarity=0.249 Sum_probs=112.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc--CCcc------------cc-------cccccceeeEEEECCEEEEEEECCCCCCCcc
Q 030120 18 ARILVLGLDNAGKTTILYRLQM--GEVV------------ST-------IPTIGFNVETVQYNNIKFQVWDLGGQTSIRP 76 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~--~~~~------------~~-------~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 76 (182)
.||+|+|+.++|||||..+|+. +... .. .-|+......+.+++..+.++|||||.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 5799999999999999999962 1110 00 1133344455677889999999999999999
Q ss_pred chhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHH---hCc--------
Q 030120 77 YWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEA---LEL-------- 145 (182)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~---~~~-------- 145 (182)
.....++-+|++++|+|+..+-.. +....|..... .++|.++++||+|.........+.+. +..
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~-qT~~v~~~a~~----~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~ 157 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQA-QTRILFHALRK----MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKV 157 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCS-HHHHHHHHHHH----HTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCC
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcH-HHHHHHHHHHH----cCCCeEEEEeccccccCCHHHHHHHHHHHhCCCcccccee
Confidence 999999999999999999987432 23444444443 36889999999998654332211111 100
Q ss_pred ------------------------------------------------ccccCCceEEEEecCCCCCCHHHHHHHHHHHH
Q 030120 146 ------------------------------------------------HKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 146 ------------------------------------------------~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 177 (182)
......-.|++..||+++.|++.+++.+.+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~ 237 (638)
T 3j25_A 158 ELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKF 237 (638)
T ss_dssp CSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSC
T ss_pred EeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhccc
Confidence 00112235788899999999999999999877
Q ss_pred hcC
Q 030120 178 KSG 180 (182)
Q Consensus 178 ~~~ 180 (182)
+.+
T Consensus 238 p~p 240 (638)
T 3j25_A 238 YSS 240 (638)
T ss_dssp CCS
T ss_pred cCc
Confidence 643
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4.8e-17 Score=127.72 Aligned_cols=155 Identities=16% Similarity=0.141 Sum_probs=98.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc--cccccc-------------------------------------------
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIG------------------------------------------- 50 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t~~------------------------------------------- 50 (182)
.-.+|+++|.+++|||||+|++++..+.+ ..+++.
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 45699999999999999999999987632 111110
Q ss_pred -----ce----eeEEEE-CCEEEEEEECCCCCCC-------------ccchhhhc-CCCCeEEEEEeCCCcccHHHHHHH
Q 030120 51 -----FN----VETVQY-NNIKFQVWDLGGQTSI-------------RPYWRCYF-PNTEAVIYVVDSSDTDRIQTAKEE 106 (182)
Q Consensus 51 -----~~----~~~~~~-~~~~~~~~D~~g~~~~-------------~~~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~~ 106 (182)
+. ...+.. ....+.++||||.... ......++ ..+|++++|+|++.+.........
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l 209 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 209 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence 00 001111 2346889999995441 12233344 578999999999876443333222
Q ss_pred HHHHHhccccCCCeEEEEEeCCCCCCCCCH-HHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHH
Q 030120 107 FHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 107 ~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 175 (182)
+..+ . ..+.|+++|+||+|+.+.... ..+.. ...........+++++||++|.|++++++.+.+
T Consensus 210 l~~L-~---~~g~pvIlVlNKiDlv~~~~~~~~il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 210 AKEV-D---PQGQRTIGVITKLDLMDEGTDARDVLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHH-C---TTCSSEEEEEECTTSSCTTCCSHHHHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHH-H---hcCCCEEEEEeCcccCCcchhhHHHHH-HHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 2222 2 246899999999999754332 22211 111111223457899999999999999999886
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=4.5e-18 Score=121.67 Aligned_cols=159 Identities=15% Similarity=0.201 Sum_probs=77.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC-Ccccc---------cccccceeeEEEE----CCEEEEEEECCCC-------C
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMG-EVVST---------IPTIGFNVETVQY----NNIKFQVWDLGGQ-------T 72 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~-~~~~~---------~~t~~~~~~~~~~----~~~~~~~~D~~g~-------~ 72 (182)
..-.++|+++|++|+|||||++++.+. .+... .++.......+.. ....+.+|||+|. +
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 356789999999999999999998875 33221 1222222222222 2468899999997 4
Q ss_pred CCccchh-------hhc-------------CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030120 73 SIRPYWR-------CYF-------------PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 73 ~~~~~~~-------~~~-------------~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
.+..... .++ ..+++++|+.+++.. ++..... .+++... .+.++++|+||+|+..
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~---~~l~~l~-~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDV---AFMKAIH-NKVNIVPVIAKADTLT 169 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHH---HHHHHHT-TTSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHH---HHHHHHH-hcCCEEEEEEeCCCCC
Confidence 4444332 222 124557777765432 1222221 2222221 3578999999999864
Q ss_pred CCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHHHHhc
Q 030120 133 ALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
........+.. .......+++++++||+++ |++++|..+.+.+.+
T Consensus 170 ~~e~~~~~~~~-~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 170 LKERERLKKRI-LDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp HHHHHHHHHHH-HHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred HHHHHHHHHHH-HHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 31111111111 1112233567999999999 999999999887754
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-17 Score=114.86 Aligned_cols=150 Identities=18% Similarity=0.192 Sum_probs=92.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-------ccccc----------cceeeEE------------------EEC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-------TIPTI----------GFNVETV------------------QYN 59 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-------~~~t~----------~~~~~~~------------------~~~ 59 (182)
.+..+++++|.+|+|||||+++|.+..... ..+.. +.....+ ...
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS 107 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence 456799999999999999999997642110 11110 0000111 113
Q ss_pred CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHH
Q 030120 60 NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDA 137 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~ 137 (182)
..++.+|||+|+..... .+....+.+++|+|+.+... ....+ ... .+.|+++|+||+|+.+. ....
T Consensus 108 ~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~--~~~~~-~~~------~~~~~iiv~NK~Dl~~~~~~~~~ 175 (221)
T 2wsm_A 108 DCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDD--VVEKH-PEI------FRVADLIVINKVALAEAVGADVE 175 (221)
T ss_dssp TCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTT--HHHHC-HHH------HHTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcch--hhhhh-hhh------hhcCCEEEEecccCCcchhhHHH
Confidence 45788999998521110 11135688999999987642 11111 111 14688999999998532 2334
Q ss_pred HHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHHHHhc
Q 030120 138 AVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
++...+... ....+++++||++|.|+++++++|.+.+..
T Consensus 176 ~~~~~~~~~---~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 176 KMKADAKLI---NPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHHHHHH---CTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred HHHHHHHHh---CCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 444433221 235689999999999999999999987654
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.71 E-value=3.9e-18 Score=122.10 Aligned_cols=134 Identities=19% Similarity=0.096 Sum_probs=98.3
Q ss_pred HHHHHHhcCCcc-c-ccccccceeeEEEE-CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcc-cHHHHHHHH
Q 030120 32 TILYRLQMGEVV-S-TIPTIGFNVETVQY-NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD-RIQTAKEEF 107 (182)
Q Consensus 32 sl~~~l~~~~~~-~-~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~ 107 (182)
+|+.++..+.|. . +.||++.... ... .+..+.+||+ ++++..++..+++++|++++|+|++++. ++.....|+
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l 108 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFL 108 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHH
Confidence 677788777776 4 7788884443 333 2237899999 8999999999999999999999999987 677777777
Q ss_pred HHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHH
Q 030120 108 HAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 108 ~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 175 (182)
..+.. .+.|+++|+||+|+.+....++..+..... ... ++++++||++|.|++++|..+..
T Consensus 109 ~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~--~~~-~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 109 VLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIY--SGL-YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHH--TTT-SCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHH--hhh-CcEEEEECCCCcCHHHHHHHhcC
Confidence 76533 478999999999996432111112221111 111 57999999999999999987653
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-17 Score=122.56 Aligned_cols=154 Identities=16% Similarity=0.218 Sum_probs=73.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-c--------cccccceeeEEEE----CCEEEEEEECCCCCCCc------
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-T--------IPTIGFNVETVQY----NNIKFQVWDLGGQTSIR------ 75 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~--------~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~------ 75 (182)
.-.++|+++|++|+|||||++.|++..+.. . .++.......+.. ....+.+||++|.....
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 456789999999999999999999877532 1 1122111111111 12478999999976531
Q ss_pred -cc------------------hhhhcCCC--CeEEEEEeCC-CcccHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030120 76 -PY------------------WRCYFPNT--EAVIYVVDSS-DTDRIQTAK-EEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 76 -~~------------------~~~~~~~~--d~ii~v~d~~-~~~s~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
.. ...++..+ |+++|+.+++ .. +.... .++..+ . .+.|+|+|+||+|+..
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~--L~~~d~~~lk~L-~----~~v~iIlVinK~Dll~ 181 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG--LKPLDIEFMKRL-H----EKVNIIPLIAKADTLT 181 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCS--CCHHHHHHHHHH-T----TTSEEEEEEESTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccC--CCHHHHHHHHHH-h----ccCcEEEEEEcccCcc
Confidence 10 12233444 4566665554 23 33333 344443 2 3689999999999864
Q ss_pred CCCHHHHHHHh--CcccccCCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 030120 133 ALDDAAVSEAL--ELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 133 ~~~~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
. .++.... ........+++++++|++++.++++++..+.+.++
T Consensus 182 ~---~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 182 P---EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp H---HHHHHHHHHHHHHHHHHTCCCCCCC-----------------CC
T ss_pred H---HHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 3 2332211 01111223567899999999999998888877654
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.5e-17 Score=114.44 Aligned_cols=165 Identities=16% Similarity=0.080 Sum_probs=96.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHh-----cCCccc--cccccc-c------------eeeEE------------------
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQ-----MGEVVS--TIPTIG-F------------NVETV------------------ 56 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~-----~~~~~~--~~~t~~-~------------~~~~~------------------ 56 (182)
.+...+++.|.+|+||||+++.+. +....- ..+... . .....
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRL 91 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHH
Confidence 456788899999999999999997 444211 111100 0 00000
Q ss_pred ------------EE-CCEEEEEEECCCCCCCccch------hhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccC
Q 030120 57 ------------QY-NNIKFQVWDLGGQTSIRPYW------RCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELK 117 (182)
Q Consensus 57 ------------~~-~~~~~~~~D~~g~~~~~~~~------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 117 (182)
.. ...++.+|||||+....... ...+.. +++++++|+....+..................
T Consensus 92 ~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~ 170 (262)
T 1yrb_A 92 MEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRL 170 (262)
T ss_dssp HTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhccc
Confidence 00 13589999999986543221 124466 89999999865433333322221111111223
Q ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHhCc-------------------------ccccCCceEEEEecCCCCCCHHHHHHH
Q 030120 118 GAVALIFANKQDLPGALDDAAVSEALEL-------------------------HKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 118 ~~~iivv~nK~D~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 172 (182)
+.|+++|+||+|+.......++.+.+.. ........+++++||+++.|+++++++
T Consensus 171 ~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~ 250 (262)
T 1yrb_A 171 GATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETL 250 (262)
T ss_dssp TSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHH
T ss_pred CCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHH
Confidence 6899999999998643211112211100 000112346899999999999999999
Q ss_pred HHHHHhcC
Q 030120 173 LSNTLKSG 180 (182)
Q Consensus 173 i~~~~~~~ 180 (182)
|.+.+...
T Consensus 251 i~~~~~~~ 258 (262)
T 1yrb_A 251 AYEHYCTC 258 (262)
T ss_dssp HHHHHHHH
T ss_pred HHHHhccc
Confidence 99887653
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.69 E-value=7.8e-16 Score=121.55 Aligned_cols=116 Identities=20% Similarity=0.141 Sum_probs=83.4
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCC--------cc------c-------ccccccceeeEEEEC-------CEEEE
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGE--------VV------S-------TIPTIGFNVETVQYN-------NIKFQ 64 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~--------~~------~-------~~~t~~~~~~~~~~~-------~~~~~ 64 (182)
+-++.-+|+|+|+.++|||||..+|+... .. . ..-|+......+.+. +..+.
T Consensus 9 p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iN 88 (709)
T 4fn5_A 9 PINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVN 88 (709)
T ss_dssp CGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEE
T ss_pred chHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEE
Confidence 34667799999999999999999996211 11 0 001222333444442 57899
Q ss_pred EEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 65 VWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 65 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
++|||||.+|.......++-+|++++|+|+..+-.. +....|....+ .++|.++++||+|....
T Consensus 89 lIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~-qT~~v~~~a~~----~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 89 VIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEP-QSETVWRQANK----YGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp EECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCH-HHHHHHHHHHH----HTCCEEEEEECSSSTTC
T ss_pred EEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCch-hHHHHHHHHHH----cCCCeEEEEccccccCc
Confidence 999999999999999999999999999999988432 33444455444 37999999999998643
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.7e-16 Score=115.98 Aligned_cols=112 Identities=17% Similarity=0.155 Sum_probs=78.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECCEEEEEEECCCCCCC-------ccchhhhcCCCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSI-------RPYWRCYFPNTE 86 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~~d 86 (182)
..+|+++|.||+|||||+|+|.+..... ...|.+.+...+.+.+.+++++||||.-.. ........+.+|
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad 151 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCN 151 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCS
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcC
Confidence 4589999999999999999999876433 444677888889999999999999994321 122344567899
Q ss_pred eEEEEEeCCCcccHHHHHHHHHHHHh-ccccCCCeEEEEEeCCCC
Q 030120 87 AVIYVVDSSDTDRIQTAKEEFHAILE-EEELKGAVALIFANKQDL 130 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~iivv~nK~D~ 130 (182)
++++|+|+.++. ........++.. .....+.|.++++||.|.
T Consensus 152 ~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 152 LLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp EEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred ccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 999999999873 222211111111 122245677778888875
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-15 Score=109.76 Aligned_cols=80 Identities=21% Similarity=0.251 Sum_probs=59.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-c--cccccceeeEEEECC-----------------EEEEEEECCCCCCCc-
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-T--IPTIGFNVETVQYNN-----------------IKFQVWDLGGQTSIR- 75 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~--~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~~~~- 75 (182)
.++|+++|.+|+|||||+|++.+..+.. . .+|.+.+...+.+.+ ..+.+|||||.....
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 3689999999999999999999877422 2 235566665665543 579999999987642
Q ss_pred ------cchhhhcCCCCeEEEEEeCCC
Q 030120 76 ------PYWRCYFPNTEAVIYVVDSSD 96 (182)
Q Consensus 76 ------~~~~~~~~~~d~ii~v~d~~~ 96 (182)
......++.+|++++|+|+.+
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 223445789999999999986
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-17 Score=120.62 Aligned_cols=153 Identities=18% Similarity=0.132 Sum_probs=90.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhc------CCcc--cccccccc-------------------eee--E---------
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQM------GEVV--STIPTIGF-------------------NVE--T--------- 55 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~------~~~~--~~~~t~~~-------------------~~~--~--------- 55 (182)
..+...++++|++|+|||||++.+.+ .... ...+.... +.. .
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g 132 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG 132 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccch
Confidence 45678899999999999999999963 2211 01110000 000 0
Q ss_pred -----------EEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEE
Q 030120 56 -----------VQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIF 124 (182)
Q Consensus 56 -----------~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv 124 (182)
+...+.++.+|||||...... .....+|++++|+|+..++...... . ...+.|.++|
T Consensus 133 ~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~----~-----~~~~~p~ivv 200 (341)
T 2p67_A 133 ASQRARELMLLCEAAGYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIK----K-----GLMEVADLIV 200 (341)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCC----H-----HHHHHCSEEE
T ss_pred hHHHHHHHHHHhhccCCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHH----H-----hhhcccCEEE
Confidence 002467899999999765432 2458899999999997653211100 0 0013578999
Q ss_pred EeCCCCCCCCCHHHHHHHhC----cccc--cCCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 030120 125 ANKQDLPGALDDAAVSEALE----LHKI--KNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 125 ~nK~D~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
+||+|+............+. .... .....+++++||++|.|++++++.|.+.+.
T Consensus 201 ~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 201 INKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp ECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred EECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 99999864311111111111 1010 111357899999999999999999988654
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.7e-16 Score=103.63 Aligned_cols=174 Identities=20% Similarity=0.281 Sum_probs=115.1
Q ss_pred HHHHhhhhcCCCccEEEEEcCC-CCCHHHHHHHHhcCC-ccc-------ccccccc-------eeeEEEE----------
Q 030120 5 FSRMFSSLFGNKEARILVLGLD-NAGKTTILYRLQMGE-VVS-------TIPTIGF-------NVETVQY---------- 58 (182)
Q Consensus 5 ~~~~~~~~~~~~~~~v~i~G~~-~~GKssl~~~l~~~~-~~~-------~~~t~~~-------~~~~~~~---------- 58 (182)
.+.|+++...+...+++++||. ..=..+|+.++...+ ..+ ....++. +.+.+..
T Consensus 4 ~~~~~~s~~~~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~e 83 (227)
T 3l82_B 4 VTSFLHSLIIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKE 83 (227)
T ss_dssp CCCSSSCCCCCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC----
T ss_pred HHHHHHHhccCCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHH
Confidence 4567888889999999999983 455668988887654 221 1111110 0111111
Q ss_pred ----------CCEEEEEEECC------CCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHH---HHHHhccc-cCC
Q 030120 59 ----------NNIKFQVWDLG------GQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEF---HAILEEEE-LKG 118 (182)
Q Consensus 59 ----------~~~~~~~~D~~------g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~---~~~~~~~~-~~~ 118 (182)
...++-...+| |++.++..|..|+.++|++|||+|.++.+.++ ....+ ..++.... ..+
T Consensus 84 r~~~~~~~~~~~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~g 162 (227)
T 3l82_B 84 RDRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSG 162 (227)
T ss_dssp ---------------------------------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSC
T ss_pred hhhhhhhhhhhhhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCC
Confidence 01122333343 78899999999999999999999999887654 44444 33333322 357
Q ss_pred CeEEEEEeCC-CCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030120 119 AVALIFANKQ-DLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 119 ~~iivv~nK~-D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
.|++|+.||. |+.......++.+.+..... ...|.+..|||++|+|+.+-++||.+.+...
T Consensus 163 apLLVlANKqqDlp~Ams~~EI~e~L~L~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 163 RPLLVLSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp SCEEEEEEESSTTSCBCCHHHHHHHTTGGGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred CeEEEEeCCCcCccCCCCHHHHHHHcCCcCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 8999999995 78777788899998887665 4789999999999999999999999877543
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-15 Score=105.10 Aligned_cols=151 Identities=18% Similarity=0.155 Sum_probs=87.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc----------------eeeEEEE-------------------
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF----------------NVETVQY------------------- 58 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~----------------~~~~~~~------------------- 58 (182)
.+..+|+++|.+|+|||||+++++...+.. ..++++. ....+..
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 467899999999999999999998654322 1111111 1111110
Q ss_pred -CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CC
Q 030120 59 -NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LD 135 (182)
Q Consensus 59 -~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~ 135 (182)
...++.++|++|.-... ..+-...+.++.++|+......... .... .+.|.++|+||+|+.+. ..
T Consensus 116 ~~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~~---~~~~------~~~~~iiv~NK~Dl~~~~~~~ 183 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIEK---HPGI------MKTADLIVINKIDLADAVGAD 183 (226)
T ss_dssp GGGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTTT---CHHH------HTTCSEEEEECGGGHHHHTCC
T ss_pred cCCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHhh---hhhH------hhcCCEEEEeccccCchhHHH
Confidence 01256677777632111 1111234556677775332111100 0011 14678999999998532 23
Q ss_pred HHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030120 136 DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
..++...... .....+++++||++|.|++++|+.+.+.+...
T Consensus 184 ~~~~~~~~~~---~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 225 (226)
T 2hf9_A 184 IKKMENDAKR---INPDAEVVLLSLKTMEGFDKVLEFIEKSVKEV 225 (226)
T ss_dssp HHHHHHHHHH---HCTTSEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH---hCCCCeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence 3333333321 12356899999999999999999999887653
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-15 Score=109.50 Aligned_cols=153 Identities=15% Similarity=0.131 Sum_probs=89.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhc------CCcc--ccccccc-------------------ceeeE-----------
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQM------GEVV--STIPTIG-------------------FNVET----------- 55 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~------~~~~--~~~~t~~-------------------~~~~~----------- 55 (182)
..+...++++|++|+|||||++.+.+ +... ...++.. .....
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G 131 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGG 131 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccc
Confidence 35677899999999999999999973 3321 1111000 00000
Q ss_pred -----------EEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEE
Q 030120 56 -----------VQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIF 124 (182)
Q Consensus 56 -----------~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv 124 (182)
+...+.++.++||||...-. ......+|.+++++|+..++......... ...+.+++
T Consensus 132 ~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---------~~~~~ivv 199 (337)
T 2qm8_A 132 VAAKTRETMLLCEAAGFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI---------FELADMIA 199 (337)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---------HHHCSEEE
T ss_pred hHHHHHHHHHHHhcCCCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHH---------hccccEEE
Confidence 11257899999999965432 23347899999999987543211111000 12355778
Q ss_pred EeCCCCCCCCC-----HHHHHHHhCccccc--CCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 030120 125 ANKQDLPGALD-----DAAVSEALELHKIK--NRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 125 ~nK~D~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
+||+|+..... .+++.......... ....+++.+||+++.|++++++.|.+...
T Consensus 200 lNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 200 VNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred EEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 89999753211 11222222111100 11346888999999999999999988654
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-14 Score=105.53 Aligned_cols=79 Identities=20% Similarity=0.253 Sum_probs=56.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-c--ccccccceeeEEEE---------------------CCEEEEEEECCCCCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVV-S--TIPTIGFNVETVQY---------------------NNIKFQVWDLGGQTS 73 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~-~--~~~t~~~~~~~~~~---------------------~~~~~~~~D~~g~~~ 73 (182)
++++++|.+|+|||||+|++.+.... . ...|...+.....+ ....+.+|||||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 57999999999999999999876421 1 22244444444433 235799999999765
Q ss_pred Cc-------cchhhhcCCCCeEEEEEeCCC
Q 030120 74 IR-------PYWRCYFPNTEAVIYVVDSSD 96 (182)
Q Consensus 74 ~~-------~~~~~~~~~~d~ii~v~d~~~ 96 (182)
.. ..+...++.+|++++|+|+.+
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 32 223445789999999999985
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=8.2e-15 Score=102.25 Aligned_cols=111 Identities=21% Similarity=0.337 Sum_probs=87.4
Q ss_pred CCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHH---HHHhccc-cCCCeEEEEEeC-CCCCCCCCHHHHHHH
Q 030120 68 LGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFH---AILEEEE-LKGAVALIFANK-QDLPGALDDAAVSEA 142 (182)
Q Consensus 68 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~---~~~~~~~-~~~~~iivv~nK-~D~~~~~~~~~~~~~ 142 (182)
.+||+.++..|..|+.++|++|||+|.+|.++++ ....+. .++.... ..+.|++|+.|| -|+.......++.+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 4578999999999999999999999999998765 333222 3443322 357899999997 588777788899998
Q ss_pred hCcccccCCceEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030120 143 LELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 143 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
+..... ...+.+..|||++|+|+.+-++||.+.+...
T Consensus 273 L~L~~l-~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 273 LHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp TTGGGG-CSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred cCCccC-CCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 887665 3789999999999999999999999987543
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.1e-13 Score=100.11 Aligned_cols=84 Identities=19% Similarity=0.230 Sum_probs=53.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEEC-----------------CEEEEEEECCCCCCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYN-----------------NIKFQVWDLGGQTSI 74 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~-----------------~~~~~~~D~~g~~~~ 74 (182)
....+++++|.+|+|||||+|++.+..+.. ...|.+++...+.+. ...+.+|||||....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 567899999999999999999999886532 223455555555543 235999999997653
Q ss_pred c-------cchhhhcCCCCeEEEEEeCCCcc
Q 030120 75 R-------PYWRCYFPNTEAVIYVVDSSDTD 98 (182)
Q Consensus 75 ~-------~~~~~~~~~~d~ii~v~d~~~~~ 98 (182)
. ..+..+++.+|++++|+|+.+..
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC----
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 3 24567789999999999997543
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.4e-12 Score=92.05 Aligned_cols=99 Identities=18% Similarity=0.163 Sum_probs=71.7
Q ss_pred CCCCccchhhhcCCCCeEEEEEeCCCcc-cHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCccccc
Q 030120 71 QTSIRPYWRCYFPNTEAVIYVVDSSDTD-RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIK 149 (182)
Q Consensus 71 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~ 149 (182)
++++..+...+++++|++++|+|++++. ++.....|+..+.. .++|+++|+||+|+.+........+... ...
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~--~~~ 139 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWIS--IYR 139 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHH--HHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHH--HHH
Confidence 6777777888999999999999999886 77777777765533 4799999999999964311001111111 111
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHHH
Q 030120 150 NRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 150 ~~~~~~~~~Sa~~~~~v~~l~~~i~~ 175 (182)
..+.+++++||++|.|++++++.+..
T Consensus 140 ~~g~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 140 DAGYDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp HTTCEEEECCTTTCTTHHHHHHHTTT
T ss_pred HCCCeEEEEECCCCCCHHHHHhhccC
Confidence 22468999999999999999987643
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=9e-11 Score=86.95 Aligned_cols=159 Identities=16% Similarity=0.095 Sum_probs=89.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccc------cccccceeeEEEECC-EEEEEEECCCCCCCccchhh-----hcC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVST------IPTIGFNVETVQYNN-IKFQVWDLGGQTSIRPYWRC-----YFP 83 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~~------~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~-----~~~ 83 (182)
....++++|++|+|||||+|.+.+-..... ...+.......+... ..+.++|++|.......... .+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 455899999999999999999988432221 100100111111121 25789999984321111111 123
Q ss_pred CCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC---------CCCCHHHHHHHhCccc-----cc
Q 030120 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP---------GALDDAAVSEALELHK-----IK 149 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~---------~~~~~~~~~~~~~~~~-----~~ 149 (182)
..+..++ ++..... ..-......+.. .+.|+++|.||.|+. +.....++.+.+.... ..
T Consensus 148 ~~~~~~~-lS~G~~~--kqrv~la~aL~~----~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~ 220 (413)
T 1tq4_A 148 EYDFFII-ISATRFK--KNDIDIAKAISM----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN 220 (413)
T ss_dssp GCSEEEE-EESSCCC--HHHHHHHHHHHH----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCeEE-eCCCCcc--HHHHHHHHHHHh----cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 3355554 7766321 111122222222 368999999999873 2233444444443321 11
Q ss_pred -CCceEEEEecC--CCCCCHHHHHHHHHHHHhcCC
Q 030120 150 -NRQWAIFKTCA--IKGEGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 150 -~~~~~~~~~Sa--~~~~~v~~l~~~i~~~~~~~~ 181 (182)
.....++.+|+ .++.|++++.+.+.+.+++.+
T Consensus 221 g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 221 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred CCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 12335888999 667789999999999887654
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.21 E-value=8.9e-11 Score=86.42 Aligned_cols=82 Identities=21% Similarity=0.308 Sum_probs=62.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc--ccc--cccceeeEEEECC-----------------EEEEEEECCCCC-
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQYNN-----------------IKFQVWDLGGQT- 72 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~-----------------~~~~~~D~~g~~- 72 (182)
....+++++|++|+|||||+|.+.+..... ..| |..++...+.+.+ ..+.+||+||..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 457899999999999999999999976522 333 5556666666654 468999999943
Q ss_pred ------CCccchhhhcCCCCeEEEEEeCCC
Q 030120 73 ------SIRPYWRCYFPNTEAVIYVVDSSD 96 (182)
Q Consensus 73 ------~~~~~~~~~~~~~d~ii~v~d~~~ 96 (182)
.+...+...++.+|++++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 233345666789999999999864
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.6e-12 Score=93.56 Aligned_cols=111 Identities=13% Similarity=0.160 Sum_probs=69.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC-----Cccc--ccccccceeeEEEECCEEEEEEECCCCCCCcc--------chhhh
Q 030120 17 EARILVLGLDNAGKTTILYRLQMG-----EVVS--TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP--------YWRCY 81 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~-----~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~ 81 (182)
..+++++|.+|+|||||+|++.+. .... ..|.++.....+... ..+.++||||...... ....+
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~~~ 240 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE-SGATLYDTPGIINHHQMAHFVDARDLKII 240 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS-TTCEEEECCSCCCCSSGGGGSCTTTHHHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC-CCeEEEeCCCcCcHHHHHHHHhHHHHHHH
Confidence 458999999999999999999876 2222 334333333344333 2489999999543221 11222
Q ss_pred c--CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 82 F--PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 82 ~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
+ +..+.+++++++.+.--...... +......+.|+++++||.|....
T Consensus 241 ~~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~~~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 241 TPKREIHPRVYQLNEGQTLFFGGLAR-----LDYIKGGRRSFVCYMANELTVHR 289 (369)
T ss_dssp SCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEE
T ss_pred hcccccCceEEEEcCCceEEECCEEE-----EEEccCCCceEEEEecCCccccc
Confidence 2 67899999999853311111110 12223346899999999998644
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=99.21 E-value=2.1e-11 Score=92.46 Aligned_cols=153 Identities=15% Similarity=0.108 Sum_probs=87.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh------cCCccc--c---cccc-----------cceeeE-----------------E
Q 030120 16 KEARILVLGLDNAGKTTILYRLQ------MGEVVS--T---IPTI-----------GFNVET-----------------V 56 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~------~~~~~~--~---~~t~-----------~~~~~~-----------------~ 56 (182)
+...|+++|.+|+||||+++.|. +....- . .+.. +..... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998 544211 1 0000 010000 0
Q ss_pred EECCEEEEEEECCCCCCCcc-chhh---h--cCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeE-EEEEeCCC
Q 030120 57 QYNNIKFQVWDLGGQTSIRP-YWRC---Y--FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVA-LIFANKQD 129 (182)
Q Consensus 57 ~~~~~~~~~~D~~g~~~~~~-~~~~---~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i-ivv~nK~D 129 (182)
...+.++.++||||...... .+.. . ...+|.+++|+|+..+.... .....+.. ..|+ .+|+||+|
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~-----~~~i~gvVlNK~D 251 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD-----KVDVASVIVTKLD 251 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH-----HHCCCCEEEECTT
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh-----hcCceEEEEeCCc
Confidence 11567899999999765322 1111 1 12789999999998764321 12222211 1464 89999999
Q ss_pred CCCCCCH-HHHHHHhCccc------ccC----CceEEEEecCCCCCC-HHHHHHHHHHH
Q 030120 130 LPGALDD-AAVSEALELHK------IKN----RQWAIFKTCAIKGEG-LFEGMDWLSNT 176 (182)
Q Consensus 130 ~~~~~~~-~~~~~~~~~~~------~~~----~~~~~~~~Sa~~~~~-v~~l~~~i~~~ 176 (182)
....... ..+........ ... ...+.+.+|+..|.| +.++++++.+.
T Consensus 252 ~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp SCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 8644322 12222221100 000 111245689999999 99999988765
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.9e-11 Score=88.73 Aligned_cols=118 Identities=11% Similarity=0.124 Sum_probs=69.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC------cc--cccccccceeeEEEECCEEEEEEECCCCCCCccc--------hhh
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE------VV--STIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY--------WRC 80 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~------~~--~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~ 80 (182)
..+++++|.+|+|||||+|++.+.. .. ...|.++.....+.... .+.++||||....... ...
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~liDtPG~~~~~~~~~~l~~~~l~~ 238 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE-ESSLYDTPGIINHHQMAHYVGKQSLKL 238 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS-SCEEEECCCBCCTTSGGGGSCHHHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC-CeEEEeCCCcCcHHHHHHHhhHHHHHH
Confidence 4689999999999999999998752 11 12332333333333332 3899999995432211 111
Q ss_pred h--cCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHH
Q 030120 81 Y--FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVS 140 (182)
Q Consensus 81 ~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~ 140 (182)
+ .+..+.++++++........... .+......+.|+++++||+|.......+...
T Consensus 239 ~~~~~~i~~~~~~l~~~~~~~~g~l~-----~~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~ 295 (368)
T 3h2y_A 239 ITPTKEIKPMVFQLNEEQTLFFSGLA-----RFDYVSGGRRAFTCHFSNRLTIHRTKLEKAD 295 (368)
T ss_dssp HSCSSCCCCEEEEECTTEEEEETTTE-----EEEEEESSSEEEEEEECTTSCEEEEEHHHHH
T ss_pred hccccccCceEEEEcCCCEEEEcceE-----EEEEecCCCceEEEEecCccccccccHHHHH
Confidence 1 36678999999885331111111 0122233468999999999986554443333
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.5e-10 Score=84.65 Aligned_cols=138 Identities=11% Similarity=0.127 Sum_probs=69.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-c----cccccceeeEEEEC--C--EEEEEEECCCCCCCc-----------
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-T----IPTIGFNVETVQYN--N--IKFQVWDLGGQTSIR----------- 75 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~----~~t~~~~~~~~~~~--~--~~~~~~D~~g~~~~~----------- 75 (182)
..++++|+|++|+|||||+|.+++..+.. . .+........+... . ..+.++|++|.....
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~ 120 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE 120 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHH
Confidence 34569999999999999999999875432 1 11111111111111 1 368899999854321
Q ss_pred ---cch----hhh---------cCC--CCe-EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH
Q 030120 76 ---PYW----RCY---------FPN--TEA-VIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD 136 (182)
Q Consensus 76 ---~~~----~~~---------~~~--~d~-ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~ 136 (182)
..+ ..+ ... +|+ ++++.|...+-+..+ . .+++... .+.|+|+|+||+|.......
T Consensus 121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D--i---eilk~L~-~~~~vI~Vi~KtD~Lt~~E~ 194 (427)
T 2qag_B 121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD--L---VTMKKLD-SKVNIIPIIAKADAISKSEL 194 (427)
T ss_dssp HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH--H---HHHHHTC-SCSEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH--H---HHHHHHh-hCCCEEEEEcchhccchHHH
Confidence 011 111 112 234 455556554432222 2 2222222 47899999999998654333
Q ss_pred HHHHHHhCcccccCCceEEEEecC
Q 030120 137 AAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
..+...+... ....+++++.+|.
T Consensus 195 ~~l~~~I~~~-L~~~gi~I~~is~ 217 (427)
T 2qag_B 195 TKFKIKITSE-LVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHHHHH-HBTTBCCCCCCC-
T ss_pred HHHHHHHHHH-HHHcCCcEEecCC
Confidence 3333322210 1234555555553
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=6.6e-10 Score=78.18 Aligned_cols=111 Identities=15% Similarity=0.151 Sum_probs=62.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccc--------ccccceeeEEEE--C----CEEEEEEECCCCCCCcc------
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVSTI--------PTIGFNVETVQY--N----NIKFQVWDLGGQTSIRP------ 76 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~~~--------~t~~~~~~~~~~--~----~~~~~~~D~~g~~~~~~------ 76 (182)
.++++++|+.|+|||||+|.+++....... .........+.+ + ...+.++|++|......
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 478999999999999999999864322100 000011112222 1 23778999998422100
Q ss_pred chh----------------------hhcCCCCeEEEEEeCC-CcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 77 YWR----------------------CYFPNTEAVIYVVDSS-DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 77 ~~~----------------------~~~~~~d~ii~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
... -.+..+++.++++|.. .+-+..+ ...+..+ .. ..++++|++|+|....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L-~~----~~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHL-SK----VVNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHH-HT----TSEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHH-Hh----cCcEEEEEeccccCCH
Confidence 000 0123468999999965 3322222 2222222 22 2899999999998654
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.5e-10 Score=83.73 Aligned_cols=101 Identities=17% Similarity=0.114 Sum_probs=67.1
Q ss_pred CCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC-CHHHHHHHhCccc-
Q 030120 70 GQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL-DDAAVSEALELHK- 147 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~- 147 (182)
..+.+...+..+.+.++++++|+|+.++. ..|...+.+.. .+.|+++|+||+|+.+.. ...++.+.+....
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV--GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS--SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh--CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHH
Confidence 35677888888888999999999998752 22322222221 368999999999996543 2233333221111
Q ss_pred -ccCCceEEEEecCCCCCCHHHHHHHHHHHH
Q 030120 148 -IKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 148 -~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 177 (182)
......+++.+||++|.|++++++.+.+..
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 011123699999999999999999997654
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.5e-09 Score=76.82 Aligned_cols=58 Identities=24% Similarity=0.405 Sum_probs=38.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc--ccccccceeeEEEECCEEEEEEECCCCC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIGFNVETVQYNNIKFQVWDLGGQT 72 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 72 (182)
....++++++|.||+|||||+|++.+..... ..|.++.....+.. +..+.++||||..
T Consensus 117 ~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~ 176 (282)
T 1puj_A 117 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV-GKELELLDTPGIL 176 (282)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE-TTTEEEEECCCCC
T ss_pred CCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe-CCCEEEEECcCcC
Confidence 4567899999999999999999999887544 22222222222333 3478999999964
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=98.92 E-value=5.4e-10 Score=82.03 Aligned_cols=101 Identities=14% Similarity=0.061 Sum_probs=67.7
Q ss_pred CCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC-HHHHHHHhCcccc
Q 030120 70 GQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKI 148 (182)
Q Consensus 70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~ 148 (182)
.++.+......++..++++++|+|+.++.+ .|...+.... .+.|+++|+||+|+.+... ...+.+.+... .
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l--~~~piilV~NK~DLl~~~~~~~~~~~~l~~~-~ 128 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA--ADNPILLVGNKADLLPRSVKYPKLLRWMRRM-A 128 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC--TTSCEEEEEECGGGSCTTCCHHHHHHHHHHH-H
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh--CCCCEEEEEEChhcCCCccCHHHHHHHHHHH-H
Confidence 477888888888899999999999998753 1221121111 3689999999999975432 33333322211 1
Q ss_pred cCCc---eEEEEecCCCCCCHHHHHHHHHHHHh
Q 030120 149 KNRQ---WAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 149 ~~~~---~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
...+ ..++.+||++|.|++++++.+.+...
T Consensus 129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp HTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HHcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 1122 36899999999999999999977543
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.90 E-value=1.1e-09 Score=77.48 Aligned_cols=102 Identities=18% Similarity=0.142 Sum_probs=66.1
Q ss_pred EEECCCCC-CCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHh
Q 030120 65 VWDLGGQT-SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEAL 143 (182)
Q Consensus 65 ~~D~~g~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~ 143 (182)
+-..|||. .........+.++|+++.|+|+.++.+... ..+..++ .++|.++|+||+|+.+....+...+..
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~ 75 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF 75 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 44578886 345566777899999999999998865432 1222232 368999999999997531111222222
Q ss_pred CcccccCCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 030120 144 ELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 144 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
...+.+++.+||+++.|++++++.+.+.+.
T Consensus 76 -----~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 76 -----ENQGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp -----HTTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred -----HhcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 123447899999999999999998877654
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=8e-10 Score=77.41 Aligned_cols=56 Identities=25% Similarity=0.337 Sum_probs=36.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccccccc--ceeeEEEECCEEEEEEECCCCCCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVSTIPTIG--FNVETVQYNNIKFQVWDLGGQTSI 74 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~D~~g~~~~ 74 (182)
++++++|.+|+|||||+|++.+.......++.+ .....+.. ...+.+|||||....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL-ENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC-TTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe-CCCEEEEECCCcccC
Confidence 699999999999999999999887654332222 22222222 347899999996543
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=3.1e-08 Score=76.48 Aligned_cols=60 Identities=13% Similarity=0.075 Sum_probs=41.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCcc-cccc-cccceeeEEE-------ECCEEEEEEECCCCCC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVV-STIP-TIGFNVETVQ-------YNNIKFQVWDLGGQTS 73 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~-~~~~-t~~~~~~~~~-------~~~~~~~~~D~~g~~~ 73 (182)
..+..+|+|+|.||+|||||+|+|++.... .... +.+....... ..+..+.++||||...
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 467789999999999999999999988742 2211 1122222211 1467899999999653
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=98.55 E-value=6.7e-08 Score=72.26 Aligned_cols=108 Identities=19% Similarity=0.239 Sum_probs=63.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC------Ccc--ccc--------------------------ccccc-ee--eEE-EE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMG------EVV--STI--------------------------PTIGF-NV--ETV-QY 58 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~------~~~--~~~--------------------------~t~~~-~~--~~~-~~ 58 (182)
...|+++|++|+||||+++.|... .+. ... .+.+. .. ..+ ..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 457999999999999999999642 211 000 00000 00 000 01
Q ss_pred CCEEEEEEECCCCCCCccchh------hhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCC-e-EEEEEeCCCC
Q 030120 59 NNIKFQVWDLGGQTSIRPYWR------CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGA-V-ALIFANKQDL 130 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~-iivv~nK~D~ 130 (182)
.+.++.++||||......... .....+|.+++|+|+..+.. .......+ . ... | ..+|+||+|.
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~-~----~~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAF-K----EAVGEIGSIIVTKLDG 250 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHH-H----TTSCSCEEEEEECSSS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHH-h----hcccCCeEEEEeCCCC
Confidence 567899999999765422111 12236899999999976632 22222222 1 234 4 8999999998
Q ss_pred CC
Q 030120 131 PG 132 (182)
Q Consensus 131 ~~ 132 (182)
..
T Consensus 251 ~~ 252 (432)
T 2v3c_C 251 SA 252 (432)
T ss_dssp CS
T ss_pred cc
Confidence 54
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.54 E-value=5.2e-07 Score=67.37 Aligned_cols=111 Identities=20% Similarity=0.219 Sum_probs=64.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh------cCCccc-----cccc---------ccceeeEEE------------------
Q 030120 16 KEARILVLGLDNAGKTTILYRLQ------MGEVVS-----TIPT---------IGFNVETVQ------------------ 57 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~------~~~~~~-----~~~t---------~~~~~~~~~------------------ 57 (182)
+...|+++|++|+||||++..|. +..+.- ..+. .......+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 35688999999999999999886 222110 0000 000000000
Q ss_pred -ECCEEEEEEECCCCCCCccchh------hhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCC
Q 030120 58 -YNNIKFQVWDLGGQTSIRPYWR------CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDL 130 (182)
Q Consensus 58 -~~~~~~~~~D~~g~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~ 130 (182)
..+.++.++||||......... .....+|.+++|+|+..+...... ...+... -.+..+|+||.|.
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~---a~~f~~~----~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ---ALAFKEA----TPIGSIIVTKLDG 251 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH---HHHHHHS----CTTEEEEEECCSS
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH---HHHHHhh----CCCeEEEEECCCC
Confidence 0347899999999654332211 112357999999999876433222 2223222 2345799999998
Q ss_pred CCC
Q 030120 131 PGA 133 (182)
Q Consensus 131 ~~~ 133 (182)
...
T Consensus 252 ~~~ 254 (443)
T 3dm5_A 252 SAK 254 (443)
T ss_dssp CSS
T ss_pred ccc
Confidence 643
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=98.51 E-value=1.1e-07 Score=74.15 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.++|+|+.|+|||||++.+.|-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999998864
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=2.3e-08 Score=70.03 Aligned_cols=93 Identities=11% Similarity=0.006 Sum_probs=58.1
Q ss_pred CCCCCC-CccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcc
Q 030120 68 LGGQTS-IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELH 146 (182)
Q Consensus 68 ~~g~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~ 146 (182)
.|||.. ........+.++|+++.|+|+.++.+..... +. + . ++|.++|+||+|+.+....+...+.+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l-----l-~k~~iivlNK~DL~~~~~~~~~~~~~~-- 72 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F-----S-RKETIILLNKVDIADEKTTKKWVEFFK-- 72 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C-----T-TSEEEEEEECGGGSCHHHHHHHHHHHH--
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h-----c-CCCcEEEEECccCCCHHHHHHHHHHHH--
Confidence 477663 3345667789999999999999885532211 11 1 1 789999999999975321122222221
Q ss_pred cccCCceEEEEecCCCCCCHHHHHHHHHH
Q 030120 147 KIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 147 ~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 175 (182)
..+.++ .+||+++.|++++++.+.+
T Consensus 73 ---~~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 73 ---KQGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp ---HTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred ---HcCCeE-EEECCCCcCHHHHHHHHHH
Confidence 123456 9999999999998887643
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.25 E-value=4.6e-07 Score=64.70 Aligned_cols=90 Identities=16% Similarity=0.140 Sum_probs=55.4
Q ss_pred hhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH-HHHHHHhCcccccCCceEEE
Q 030120 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIF 156 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 156 (182)
......++|.+++|+|+.++..-... +..++......++|.++|+||+|+.+.... ..+....+.. ...+.+++
T Consensus 80 ~R~~~anvD~v~~V~~~~~p~~~~~~---i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y--~~~g~~v~ 154 (307)
T 1t9h_A 80 IRPPICNVDQAVLVFSAVQPSFSTAL---LDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDY--RNIGYDVY 154 (307)
T ss_dssp TTTTEECCCEEEEEEESTTTTCCHHH---HHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHH--HHHTCCEE
T ss_pred hHHHHHhCCEEEEEEeCCCCCCCHHH---HHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHH--HhCCCeEE
Confidence 34467899999999999977543332 222332222247899999999999765220 1122222111 11234689
Q ss_pred EecCCCCCCHHHHHHH
Q 030120 157 KTCAIKGEGLFEGMDW 172 (182)
Q Consensus 157 ~~Sa~~~~~v~~l~~~ 172 (182)
.+||.++.|++++++.
T Consensus 155 ~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 155 LTSSKDQDSLADIIPH 170 (307)
T ss_dssp ECCHHHHTTCTTTGGG
T ss_pred EEecCCCCCHHHHHhh
Confidence 9999999888776543
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.22 E-value=1.6e-06 Score=64.64 Aligned_cols=110 Identities=22% Similarity=0.251 Sum_probs=63.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh------cCCccc-----ccc-----------cccceeeE-----------------E
Q 030120 16 KEARILVLGLDNAGKTTILYRLQ------MGEVVS-----TIP-----------TIGFNVET-----------------V 56 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~------~~~~~~-----~~~-----------t~~~~~~~-----------------~ 56 (182)
+...++++|++|+||||++..|. +..+.- ..+ ..+..... .
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 35678899999999999999986 222110 000 00100000 0
Q ss_pred EECCEEEEEEECCCCCC--Cccch----hh--hcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCC
Q 030120 57 QYNNIKFQVWDLGGQTS--IRPYW----RC--YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQ 128 (182)
Q Consensus 57 ~~~~~~~~~~D~~g~~~--~~~~~----~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~ 128 (182)
...+.++.++||||... ..... .. .....+.+++|+|+..+.........+.+. -.+..+|+||.
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKl 248 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA-------SPIGSVIITKM 248 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECG
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcc-------cCCcEEEEecc
Confidence 01367899999999654 22111 11 112468999999998764433333332222 13468899999
Q ss_pred CCCC
Q 030120 129 DLPG 132 (182)
Q Consensus 129 D~~~ 132 (182)
|...
T Consensus 249 D~~a 252 (433)
T 3kl4_A 249 DGTA 252 (433)
T ss_dssp GGCS
T ss_pred cccc
Confidence 9753
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=98.20 E-value=5.5e-06 Score=58.98 Aligned_cols=108 Identities=20% Similarity=0.186 Sum_probs=62.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh------cCCccc--cc---cc-----------ccceee-----------------EEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQ------MGEVVS--TI---PT-----------IGFNVE-----------------TVQ 57 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~------~~~~~~--~~---~t-----------~~~~~~-----------------~~~ 57 (182)
...++++|++|+||||++..+. ++...- .. +. .+.... ...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 4568899999999999999886 222110 00 00 000000 001
Q ss_pred ECCEEEEEEECCCCCC--Cccchh------hhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEEeCC
Q 030120 58 YNNIKFQVWDLGGQTS--IRPYWR------CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQ 128 (182)
Q Consensus 58 ~~~~~~~~~D~~g~~~--~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~ 128 (182)
..+.++.++||||... ...... .....+|.+++|+|+..... .......+.. ..+ ..+|+||.
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~-----~~~i~gvVlnk~ 249 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ-----ASKIGTIIITKM 249 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH-----TCTTEEEEEECG
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh-----hCCCCEEEEeCC
Confidence 1467899999999776 322111 12346899999999975422 2222222221 244 67899999
Q ss_pred CCCC
Q 030120 129 DLPG 132 (182)
Q Consensus 129 D~~~ 132 (182)
|...
T Consensus 250 D~~~ 253 (297)
T 1j8m_F 250 DGTA 253 (297)
T ss_dssp GGCT
T ss_pred CCCc
Confidence 9753
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=98.13 E-value=7.3e-06 Score=59.71 Aligned_cols=86 Identities=16% Similarity=0.157 Sum_probs=52.0
Q ss_pred hcCCCCeEEEEEeCCCcc-cHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEec
Q 030120 81 YFPNTEAVIYVVDSSDTD-RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTC 159 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
...++|.+++|.... +. +......++.... ..++|.++|+||+|+.+......+...... ....+.+++.+|
T Consensus 127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~----~~~~~~iivlNK~DL~~~~~~~~~~~~~~~--y~~~G~~v~~~S 199 (358)
T 2rcn_A 127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGCE----TLQVEPLIVLNKIDLLDDEGMDFVNEQMDI--YRNIGYRVLMVS 199 (358)
T ss_dssp EEECCCEEEEEEEST-TTCCHHHHHHHHHHHH----HHTCEEEEEEECGGGCCHHHHHHHHHHHHH--HHTTTCCEEECB
T ss_pred HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCchhHHHHHHHHHH--HHhCCCcEEEEe
Confidence 357899999886654 53 3333333222221 136788999999999754221112222221 123445699999
Q ss_pred CCCCCCHHHHHHHH
Q 030120 160 AIKGEGLFEGMDWL 173 (182)
Q Consensus 160 a~~~~~v~~l~~~i 173 (182)
|.++.|++++...+
T Consensus 200 a~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 200 SHTQDGLKPLEEAL 213 (358)
T ss_dssp TTTTBTHHHHHHHH
T ss_pred cCCCcCHHHHHHhc
Confidence 99999999877643
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=98.07 E-value=2.2e-05 Score=58.83 Aligned_cols=110 Identities=20% Similarity=0.190 Sum_probs=63.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh-------cCCccc--ccc---c-----------cccee---------e--------E
Q 030120 16 KEARILVLGLDNAGKTTILYRLQ-------MGEVVS--TIP---T-----------IGFNV---------E--------T 55 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~-------~~~~~~--~~~---t-----------~~~~~---------~--------~ 55 (182)
+...|+++|.+|+||||++..|. +..+.- ..+ . .+... . .
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 34578899999999999999886 333211 000 0 00000 0 0
Q ss_pred EEECCEEEEEEECCCCCCCccchh------hhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEEeCC
Q 030120 56 VQYNNIKFQVWDLGGQTSIRPYWR------CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQ 128 (182)
Q Consensus 56 ~~~~~~~~~~~D~~g~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~ 128 (182)
....+.++.++||||......... .....++.+++|+|+...... ......+.. ..+ .-+|+||.
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~-----~l~i~gvVlnK~ 250 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE-----ALPLTGVVLTKV 250 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH-----HSCCCCEEEECT
T ss_pred HHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc-----cCCCeEEEEecC
Confidence 011467899999999765432211 124468999999999865332 222222211 233 35799999
Q ss_pred CCCCC
Q 030120 129 DLPGA 133 (182)
Q Consensus 129 D~~~~ 133 (182)
|....
T Consensus 251 D~~~~ 255 (433)
T 2xxa_A 251 DGDAR 255 (433)
T ss_dssp TSSSC
T ss_pred CCCcc
Confidence 98543
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=7.6e-06 Score=61.30 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=22.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
..+..-|+|+|++++|||+|+|.+++.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 345667889999999999999999863
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=97.94 E-value=6.4e-07 Score=67.88 Aligned_cols=85 Identities=25% Similarity=0.309 Sum_probs=49.7
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEE----CCEEEEEEECCCCCC--Cccch--------
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY----NNIKFQVWDLGGQTS--IRPYW-------- 78 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~--~~~~~-------- 78 (182)
+......|+++|.+|+||||+.+.|.........++..++...+.. ......+||..|.+. ....+
T Consensus 35 ~~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~ 114 (469)
T 1bif_A 35 MTNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDV 114 (469)
T ss_dssp ---CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 3456779999999999999999999754321111222211110000 112345688888632 22222
Q ss_pred hhhcCCCCeEEEEEeCCCc
Q 030120 79 RCYFPNTEAVIYVVDSSDT 97 (182)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~ 97 (182)
..++...++.++|+|.++.
T Consensus 115 ~~~l~~~~G~~vV~D~tn~ 133 (469)
T 1bif_A 115 RKFLSEEGGHVAVFDATNT 133 (469)
T ss_dssp HHHHHTTCCSEEEEESCCC
T ss_pred HHHHHhCCCCEEEEeCCCC
Confidence 4556567888999999987
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.77 E-value=1.6e-05 Score=52.28 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030120 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
+++++|++|+|||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999764
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.66 E-value=2.6e-05 Score=51.33 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
--++++|++|+|||||++.+.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999764
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=97.65 E-value=3.6e-05 Score=51.83 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=23.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.++...++|+|++|+|||||++.+.+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 356788999999999999999988653
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.64 E-value=2.9e-05 Score=51.95 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030120 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~ 39 (182)
-.++++|++|+|||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999976
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=3.4e-05 Score=50.64 Aligned_cols=33 Identities=12% Similarity=0.158 Sum_probs=24.9
Q ss_pred HhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 8 MFSSLFGNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 8 ~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
+.........-.++++|++|+|||||++.+.+.
T Consensus 29 ~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 29 FVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp HHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred HHHhccccCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 344333344567999999999999999998654
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.61 E-value=5.2e-05 Score=50.16 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
+.-.++++|++|+|||||++.+.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4456899999999999999999875
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.55 E-value=4.4e-05 Score=51.06 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
--++++|++|+|||||++.+.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 45899999999999999999764
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00037 Score=51.99 Aligned_cols=67 Identities=18% Similarity=0.110 Sum_probs=38.8
Q ss_pred CCEEEEEEECCCCCCCccc-hh-----hhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030120 59 NNIKFQVWDLGGQTSIRPY-WR-----CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~-~~-----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
.+.++.++||||....... .. .....++.+++|+|+..... .......+.... ...-+|+||.|...
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~---av~~a~~f~~~l----~i~GVIlTKlD~~~ 251 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQE---ALSVARAFDEKV----GVTGLVLTKLDGDA 251 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTH---HHHHHHHHHHHT----CCCEEEEESGGGCS
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHH---HHHHHHHHHhcC----CceEEEEeCcCCcc
Confidence 4568999999997654321 11 11225789999999875422 222222222111 12467899999743
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=97.54 E-value=4.6e-05 Score=51.25 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=21.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.+.--++++|+.|+|||||++.+.+-.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 344468999999999999999997643
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00044 Score=46.11 Aligned_cols=68 Identities=18% Similarity=0.120 Sum_probs=45.5
Q ss_pred CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhcc-ccCCCeEEEEEeCCCCC
Q 030120 60 NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEE-ELKGAVALIFANKQDLP 131 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~ 131 (182)
.+++.++|+|+.. .......+..+|.+++++..+... ......+..+.... ...+.++.+|+|+.|..
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 5789999999866 334455667789999999887654 34443333332211 13456789999999954
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.51 E-value=5.4e-05 Score=51.41 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
+.-.++|+|++|+|||||++.+.+..
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34468999999999999999997743
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=5.4e-05 Score=49.38 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=18.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 030120 18 ARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~ 38 (182)
--++++|++|+|||||++.+.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 357899999999999999754
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=5.8e-05 Score=51.34 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
..--++|+|+.|+|||||++.+.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 44568899999999999999997743
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=97.49 E-value=7.9e-05 Score=51.47 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 030120 16 KEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~ 38 (182)
+.-.++++|++|+|||||++.+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999998
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=97.46 E-value=7.9e-05 Score=54.30 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEV 42 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~ 42 (182)
-.++++|++|+|||||+|.+.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 3689999999999999999998654
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=7.1e-05 Score=51.47 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.=.++++|+.|+|||||++.+.+-.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3468999999999999999997653
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00011 Score=49.09 Aligned_cols=27 Identities=15% Similarity=0.326 Sum_probs=22.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.+.--++++|++|+|||||++.|.+..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 345578999999999999999998643
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=9.2e-05 Score=49.81 Aligned_cols=26 Identities=31% Similarity=0.221 Sum_probs=21.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.+...++|+|+.|+|||||++.+.+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999998663
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=97.41 E-value=9e-05 Score=47.73 Aligned_cols=27 Identities=30% Similarity=0.279 Sum_probs=22.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
...-.++++|+.|+|||||++.+.+..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344468999999999999999998754
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=97.41 E-value=8.4e-05 Score=50.71 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999997753
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00023 Score=46.67 Aligned_cols=34 Identities=24% Similarity=0.301 Sum_probs=24.9
Q ss_pred HHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 7 RMFSSLFGNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 7 ~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
++.........-.+++.|++|+|||+|++.+...
T Consensus 33 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 33 RTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp HHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 3333333344567999999999999999988654
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00011 Score=50.76 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
=.++++|+.|+|||||++.+.+-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999998753
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00014 Score=48.99 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
+.--++++|++|+|||||++.|.+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34568999999999999999998654
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00013 Score=48.77 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
...++++|++|+||||+++.+.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4578999999999999999997654
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00011 Score=51.76 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
=.++|+|+.|+|||||++.+.+-.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 357999999999999999997753
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00011 Score=47.78 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
..|+++|++|+||||+.+.+.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999764
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00012 Score=48.43 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030120 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~ 40 (182)
|+|+||+|+|||||++.|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999754
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00011 Score=51.34 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
..=.++++|+.|+|||||++.+.+-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33457899999999999999997753
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00012 Score=49.60 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|+|||||++.+.+-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999997753
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00011 Score=48.48 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030120 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
-++++|++|+||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00012 Score=51.26 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.=.++++|+.|+|||||++.+.+-.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3368899999999999999998753
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00013 Score=50.13 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.=.++++|+.|+|||||++.+.+-.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999997754
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00012 Score=50.95 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
=.++++|+.|+|||||++.+.+-.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999997754
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00015 Score=50.11 Aligned_cols=26 Identities=27% Similarity=0.235 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
..=.++++|+.|+|||||++.+.+-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999997653
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00016 Score=48.31 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=20.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 030120 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
..-.++++|++|+||||+++.+.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 455789999999999999999864
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00015 Score=50.28 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
=.++++|+.|+|||||++.+.+-.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999997754
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00014 Score=49.84 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
-.++++|+.|+|||||++.+.+-.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999998754
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00014 Score=48.68 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
...-++++|++|+|||||++.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3446899999999999999999654
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00023 Score=51.13 Aligned_cols=30 Identities=20% Similarity=0.051 Sum_probs=23.7
Q ss_pred hhhhcCCCccEEEEEcCCCCCHHHHHHHHh
Q 030120 9 FSSLFGNKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 9 ~~~~~~~~~~~v~i~G~~~~GKssl~~~l~ 38 (182)
+........+-++|+|++|+|||||++.+.
T Consensus 84 l~~~~~~~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 84 LGKPEPKVPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp HTCCCCCCCEEEEEECCTTSSHHHHHHHHH
T ss_pred hccCCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 333334567789999999999999999884
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00014 Score=50.84 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.=.++++|+.|+|||||++.+.+-.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3468899999999999999997753
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00021 Score=47.70 Aligned_cols=27 Identities=33% Similarity=0.383 Sum_probs=22.8
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhc
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.......|+++|.+|+||||+.+.|..
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345667899999999999999999854
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00014 Score=47.10 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=18.4
Q ss_pred cEEEEEcCCCCCHHHHHHHH
Q 030120 18 ARILVLGLDNAGKTTILYRL 37 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l 37 (182)
.-|+++|++|+||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35889999999999999999
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00013 Score=48.44 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030120 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.++++|+.|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5789999999999999998763
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00014 Score=50.10 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
=.++++|+.|+|||||++.+.+-.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999998753
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.30 E-value=4.2e-05 Score=54.63 Aligned_cols=25 Identities=16% Similarity=0.305 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.-.++++|++|+|||||+|.+.+..
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCEEEEECCCCCCHHHHHHHhcccc
Confidence 4578999999999999999998754
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00015 Score=50.52 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.=.++++|+.|+|||||++.+.+-.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998753
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00011 Score=49.48 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
=.++++|+.|+|||||++.+.+-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999875
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00015 Score=50.23 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
=.++++|+.|+|||||++.+.+-.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 358899999999999999997753
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00016 Score=50.19 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
=.++++|+.|+|||||++.+.+-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35889999999999999999885
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00017 Score=46.66 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030120 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.|++.|++|+||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998643
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00024 Score=47.53 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=22.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhc
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
......++++|++|+||||+++.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35667899999999999999998864
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00017 Score=50.60 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
..=.++++|+.|+|||||++.+.+-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3346899999999999999999885
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00021 Score=46.50 Aligned_cols=24 Identities=13% Similarity=0.368 Sum_probs=20.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 030120 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
....++++|++|+||||+.+.+.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345789999999999999998864
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00018 Score=51.28 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
++.-.++|+|++|+|||||++.+.+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhh
Confidence 4556799999999999999999874
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00018 Score=51.26 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCc
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEV 42 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~ 42 (182)
-.++++|++|+|||||+|.+.+...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhccccc
Confidence 3688999999999999999987553
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00018 Score=50.25 Aligned_cols=25 Identities=24% Similarity=0.163 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.=.++|+|+.|+|||||++.+.+-.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3468999999999999999998753
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00027 Score=50.52 Aligned_cols=25 Identities=28% Similarity=0.169 Sum_probs=22.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.+...++|+|+.|+|||||++.+.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5567899999999999999999876
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00021 Score=48.57 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030120 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
...|+++|++|+||||+.+.+.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999865
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00019 Score=51.41 Aligned_cols=26 Identities=31% Similarity=0.112 Sum_probs=22.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhc
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
..+..-++|+|++|+|||||++.+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 45677899999999999999999865
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00016 Score=50.53 Aligned_cols=26 Identities=31% Similarity=0.299 Sum_probs=21.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
...-.++++|+.|+|||||++.+.+-
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHh
Confidence 44457899999999999999999763
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00019 Score=46.86 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030120 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~ 39 (182)
..|++.|++|+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3588999999999999999976
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00017 Score=50.65 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.=.++|+|+.|+|||||++.+.+-.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999997754
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00019 Score=50.56 Aligned_cols=25 Identities=40% Similarity=0.553 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.=.++++|+.|+|||||++.+.+-.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3368999999999999999998754
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00018 Score=50.03 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|+|||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00026 Score=48.88 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.+..+|++.|++|+||||+.+.|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999964
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0003 Score=45.95 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=24.8
Q ss_pred HHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 7 RMFSSLFGNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 7 ~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.+.........-.+++.|++|+|||+++..+...
T Consensus 33 ~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 33 RAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp HHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 3333333345567899999999999999988654
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0002 Score=47.87 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030120 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
+|+|+|++|+||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999876
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00019 Score=50.27 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.=.++++|+.|+|||||++.+.+-.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3468899999999999999997753
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0002 Score=46.83 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.-++++|++|+|||||++.+...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 35789999999999999999764
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00031 Score=46.28 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.+...|+++|.+|+||||+.+.|...
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45568999999999999999998765
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00025 Score=48.94 Aligned_cols=25 Identities=24% Similarity=0.197 Sum_probs=21.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.+...++|+|+.|+|||||++.+.+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4556799999999999999999865
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00025 Score=47.50 Aligned_cols=22 Identities=27% Similarity=0.116 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030120 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~ 39 (182)
+.|+++|++|+||||+.+.+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999975
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00021 Score=51.03 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.-.++++|++|+|||||+|.+. ..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 3468999999999999999998 44
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00019 Score=48.77 Aligned_cols=24 Identities=29% Similarity=0.250 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.--++++|++|+|||||++.+.+.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 345789999999999999999763
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00028 Score=47.30 Aligned_cols=26 Identities=38% Similarity=0.408 Sum_probs=22.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.....++|+|++|+||||+.+.+.+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34567999999999999999999765
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00028 Score=47.09 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=22.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.+...++++|++|+||||+.+.+.+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45667999999999999999988653
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00025 Score=47.81 Aligned_cols=21 Identities=33% Similarity=0.465 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030120 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
+|++.|++|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999853
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00022 Score=47.67 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030120 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
...|+++|.+|+||||+.+.|..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998854
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00026 Score=49.51 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.=.++++|+.|+|||||++.+.+-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999998764
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00013 Score=49.88 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=15.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh-cC
Q 030120 17 EARILVLGLDNAGKTTILYRLQ-MG 40 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~-~~ 40 (182)
.--++++|++|+|||||++.+. +.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3468999999999999999998 54
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00049 Score=48.81 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=21.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHh
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~ 38 (182)
..+...|+|+|++|+|||||++.+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4567889999999999999998875
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00027 Score=47.70 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030120 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
+|+++|++|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999853
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00029 Score=46.44 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030120 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~ 39 (182)
..|++.|++|+||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999853
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0003 Score=46.18 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030120 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
...|+++|.+|+||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999863
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00033 Score=46.71 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 030120 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
+.-.|+++|++|+||||+.+.+..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 345799999999999999999863
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00035 Score=46.01 Aligned_cols=26 Identities=38% Similarity=0.405 Sum_probs=22.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhc
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
..+...|+++|.+|+||||+.+.+..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 34567799999999999999999854
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00027 Score=46.08 Aligned_cols=23 Identities=35% Similarity=0.339 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.-|++.|.+|+||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999999753
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00032 Score=46.28 Aligned_cols=23 Identities=39% Similarity=0.426 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030120 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
...|++.|.+|+||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999854
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00036 Score=47.28 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 030120 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
....|+++|.+|+||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998854
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00017 Score=51.49 Aligned_cols=26 Identities=31% Similarity=0.266 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
..=.++|+|+.|+|||||++.+.+-.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 34478999999999999999997643
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00012 Score=47.76 Aligned_cols=22 Identities=27% Similarity=0.461 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030120 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.++|+|++|+|||||++.+.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998764
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00026 Score=49.79 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030120 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~ 40 (182)
++++|++|+|||+|++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999764
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00033 Score=46.19 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030120 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
.|++.|.+|+||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999854
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0003 Score=51.40 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.=-++++|+.|+|||||++.+.+-.
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3357899999999999999998753
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00022 Score=52.20 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.-+++|+|++|+|||||++.+.+-.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999997653
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00028 Score=51.47 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
=-++++|+.|+|||||++.+.+-.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 357899999999999999998754
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00061 Score=46.42 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
..-.+++.|++|+|||+|++.+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999998643
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00035 Score=46.51 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030120 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
.|++.|.+|+||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999865
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00021 Score=45.47 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
..-.++++|++|+|||+|++.+.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3446889999999999999999764
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00042 Score=45.94 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030120 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
...|++.|.+|+||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00033 Score=49.70 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
+.=.++++|+.|+|||||++.+.+-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 33468999999999999999997753
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0004 Score=46.54 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030120 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
...|++.|.+|+||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999854
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00047 Score=45.95 Aligned_cols=24 Identities=38% Similarity=0.437 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
...|++.|.+|+||||+++.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999765
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00035 Score=50.92 Aligned_cols=24 Identities=38% Similarity=0.365 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
=-++++|+.|+|||||++.+.+-.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 357899999999999999998754
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00041 Score=45.53 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030120 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
...|+++|++|+||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999999853
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00037 Score=51.21 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
=-++++|+.|+|||||++.+.+-.
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHcCC
Confidence 357899999999999999998754
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00046 Score=45.90 Aligned_cols=26 Identities=23% Similarity=0.153 Sum_probs=22.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.+...|+|+|.+|+||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45678999999999999999998765
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00046 Score=45.55 Aligned_cols=23 Identities=35% Similarity=0.330 Sum_probs=19.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030120 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
...|++.|.+|+||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998853
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00037 Score=50.87 Aligned_cols=25 Identities=32% Similarity=0.255 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.=-++++|+.|+|||||++.+.+-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3357899999999999999998753
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00036 Score=48.32 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030120 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~ 40 (182)
++++|++|+|||||++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999764
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00039 Score=50.84 Aligned_cols=25 Identities=28% Similarity=0.394 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.=-++++|+.|+|||||++.+.+-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3357899999999999999998754
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00034 Score=51.06 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030120 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.++|+|++|+|||||++.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 8999999999999999998653
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00041 Score=49.24 Aligned_cols=26 Identities=12% Similarity=-0.050 Sum_probs=21.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
....-+++.|+||+|||+|++.+...
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34456778899999999999998653
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00052 Score=45.37 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030120 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
...|++.|.+|+||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998853
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00055 Score=47.47 Aligned_cols=24 Identities=33% Similarity=0.268 Sum_probs=21.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHh
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~ 38 (182)
.+...|+|+|++|+||||+++.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999997
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00047 Score=46.49 Aligned_cols=21 Identities=38% Similarity=0.401 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030120 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
+|++.|++|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999854
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00042 Score=50.87 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
-++++|+.|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 57899999999999999998754
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00043 Score=50.76 Aligned_cols=25 Identities=32% Similarity=0.336 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.=.++++|+.|+|||||++.+.+-.
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3467899999999999999998754
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0005 Score=46.80 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030120 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
...|++.|.+|+||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999863
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00066 Score=45.47 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=19.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 030120 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
+.-.+++.|+||+|||+++.++..
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHH
Confidence 344599999999999998888754
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00044 Score=45.05 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030120 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
+|+++|++|+||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999998854
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00055 Score=45.99 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 030120 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
+...|++.|.+|+||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999864
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00057 Score=48.37 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=21.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
....-+++.|++|+||||+.+.+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999999964
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0004 Score=50.16 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.-.++++|+.|+|||||++.+.+-.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999998753
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00055 Score=44.76 Aligned_cols=24 Identities=33% Similarity=0.324 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 030120 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
+...|+++|.+|+||||+.+.+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 345689999999999999999863
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00056 Score=46.00 Aligned_cols=22 Identities=36% Similarity=0.380 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030120 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.|+++|+|||||+|....|...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998643
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00042 Score=50.69 Aligned_cols=26 Identities=35% Similarity=0.365 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
..-.++|+|+.|+|||||++.+.+-.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 44579999999999999999998753
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00054 Score=45.92 Aligned_cols=24 Identities=38% Similarity=0.343 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 030120 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
+...|++.|.+|+||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 356799999999999999999864
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00043 Score=47.31 Aligned_cols=27 Identities=30% Similarity=0.370 Sum_probs=23.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
..+..-+++.|+.|+||||+++.+.+.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 356678999999999999999998764
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00098 Score=44.37 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
..+++.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999988653
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0007 Score=45.13 Aligned_cols=25 Identities=36% Similarity=0.368 Sum_probs=21.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.+...|++.|.+|+||||+.+.|..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4455789999999999999998863
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00069 Score=48.34 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=20.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 030120 16 KEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~ 38 (182)
+.-.++++|+.|+||||+++.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 35578999999999999999996
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00061 Score=43.91 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030120 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
+|++.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999854
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00057 Score=46.31 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030120 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
...|+++|++|+||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999853
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00054 Score=48.14 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030120 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~ 40 (182)
++++|++|+|||||++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999999764
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00035 Score=50.79 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
=-++++|+.|+|||||++.+.+-.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCccHHHHHHHHHcCC
Confidence 357899999999999999998754
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00075 Score=45.58 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030120 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
...|+|.|.+|+||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999864
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00072 Score=44.17 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=20.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 030120 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
+...|+++|.+|+||||+.+.|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999865
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00053 Score=49.61 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
-.++++|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999999764
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00054 Score=50.56 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.=.++++|+.|+|||||++.+.+-
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCChHHHHHHHHhCC
Confidence 346899999999999999999864
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00055 Score=48.82 Aligned_cols=24 Identities=42% Similarity=0.618 Sum_probs=20.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 030120 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
..--++++|+.|+||||+++.+.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 344788999999999999999964
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00058 Score=46.36 Aligned_cols=23 Identities=22% Similarity=0.171 Sum_probs=19.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030120 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.--++++|++|+|||||+..+.+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34578999999999999999873
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0008 Score=49.42 Aligned_cols=26 Identities=31% Similarity=0.299 Sum_probs=21.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
...-.++|+|++|+||||+++.+.+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34457999999999999999999763
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00084 Score=43.61 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
..++++|.+|+|||||+.++...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 45889999999999999998753
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00078 Score=48.60 Aligned_cols=110 Identities=24% Similarity=0.263 Sum_probs=61.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC------ccc-cccc---------------ccceeeE--------------E--
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGE------VVS-TIPT---------------IGFNVET--------------V-- 56 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~------~~~-~~~t---------------~~~~~~~--------------~-- 56 (182)
.+.--++++|+.|+||||+++.+.+.. +.- ...+ .++.... +
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 345678999999999999999986421 100 0000 0000000 0
Q ss_pred -EECCEEEEEEECCCCCCCccchhh------hcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCC
Q 030120 57 -QYNNIKFQVWDLGGQTSIRPYWRC------YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQD 129 (182)
Q Consensus 57 -~~~~~~~~~~D~~g~~~~~~~~~~------~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D 129 (182)
...+.++.++||+|.......... ..-..|-.+++.|+.... ........+.... ..-.+++||.|
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~----~it~iilTKlD 279 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV----KIDGIILTKLD 279 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS----CCCEEEEECGG
T ss_pred HHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc----CCCEEEEeCcC
Confidence 002456778999997543322111 112368899999987663 3333333332221 22478899999
Q ss_pred CC
Q 030120 130 LP 131 (182)
Q Consensus 130 ~~ 131 (182)
..
T Consensus 280 ~~ 281 (328)
T 3e70_C 280 AD 281 (328)
T ss_dssp GC
T ss_pred Cc
Confidence 64
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0006 Score=47.32 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030120 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
-++|+|++|+|||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999999864
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00076 Score=45.83 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030120 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
.|++.|++|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999853
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00088 Score=45.79 Aligned_cols=25 Identities=36% Similarity=0.396 Sum_probs=21.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.....|+++|.+|+||||+.+.|..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999999854
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00066 Score=45.90 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030120 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
...|+++|.+|+||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999853
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00078 Score=44.40 Aligned_cols=21 Identities=38% Similarity=0.415 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030120 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
.|++.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00061 Score=50.78 Aligned_cols=26 Identities=35% Similarity=0.395 Sum_probs=21.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
...=-++|+|+.|+|||||++.+++.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhh
Confidence 34446899999999999999999763
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00064 Score=52.00 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.-.++|+|++|+||||+++.+.+--
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3359999999999999999997643
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0012 Score=44.16 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030120 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.+++.|++|+|||++++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999988653
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0015 Score=45.67 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=23.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
......+++.|++|+|||+++..+...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 456678999999999999999998653
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00078 Score=43.60 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030120 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
.|++.|.+|+||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998854
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00067 Score=47.06 Aligned_cols=25 Identities=40% Similarity=0.348 Sum_probs=21.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.....++++|++|+||||+.+.+..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4556899999999999999999864
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00093 Score=47.14 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHh
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~ 38 (182)
.....|+|.|.+|+||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999986
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0014 Score=46.10 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=22.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.....+++.|++|+|||+|++.+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 44567999999999999999999654
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0009 Score=46.33 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=21.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.+.+.|+|.|.+|+||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998854
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00034 Score=50.99 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.=.++++|+.|+|||||++.+.+-.
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3357899999999999999998754
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00068 Score=48.09 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=19.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 030120 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
..--++|+|++|+|||||+..+.+
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 334578999999999999998864
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00089 Score=46.41 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
...+++.|++|+|||+|++.+.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999999653
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00076 Score=49.06 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=23.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.+.=+++++|+.|+|||||++.+.+..
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345589999999999999999998764
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00081 Score=44.07 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030120 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
.|+++|.+|+||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998853
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0006 Score=44.58 Aligned_cols=23 Identities=26% Similarity=0.187 Sum_probs=16.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030120 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
...|++.|.+|+||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999863
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00084 Score=43.92 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030120 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
-.+|+|+.|+|||||++++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999854
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00097 Score=45.67 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 030120 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
+.+.++|.|++|+||||+.+.+..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998863
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00097 Score=43.03 Aligned_cols=21 Identities=19% Similarity=0.569 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030120 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
.|++.|.+|+||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998853
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00063 Score=51.39 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=22.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
...-.++|+|+.|+|||||++.+.+-.
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 355579999999999999999997653
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00029 Score=47.35 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030120 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
-|+|.|.+|+||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999864
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0012 Score=43.48 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030120 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~ 39 (182)
..|++.|.+|+||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998854
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0011 Score=46.16 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030120 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~ 39 (182)
..|+++|.+|+||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0014 Score=49.61 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=25.6
Q ss_pred HHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 6 SRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 6 ~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.++.........-+++++|+||+|||++++.+...
T Consensus 190 ~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 190 QRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp HHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 33444333345568899999999999999988654
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00091 Score=45.01 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 030120 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
..--++++|++|+|||||+..+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 344689999999999999999976
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0011 Score=41.76 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=22.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.....|++.|++|+|||++.+.+...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 45567999999999999999998654
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00097 Score=45.61 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
..--++++|++|+|||||+..+.+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3446789999999999999999873
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0012 Score=43.80 Aligned_cols=25 Identities=28% Similarity=0.191 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
....|+++|.+|+||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 5678999999999999999998643
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00095 Score=48.72 Aligned_cols=24 Identities=42% Similarity=0.618 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 030120 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
+.--++++|+.|+||||+++.+.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 345788999999999999999964
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00091 Score=47.98 Aligned_cols=28 Identities=7% Similarity=0.151 Sum_probs=23.8
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.....-.+.+.|+||+|||++++.+...
T Consensus 41 ~~~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 41 MSSQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp HTTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3567778999999999999999999754
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00098 Score=46.20 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030120 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.-.|+++|++|+||||+.+.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998854
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0014 Score=44.02 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=21.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.....|+++|.+|+||||+.+.+..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4556789999999999999998854
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0016 Score=44.13 Aligned_cols=21 Identities=38% Similarity=0.377 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030120 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
-|+++|+|||||+|....|..
T Consensus 31 iI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999998864
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0022 Score=45.84 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 030120 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
..-.+++.|++|+|||+|+..+..
T Consensus 151 ~~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998865
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0011 Score=50.39 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 030120 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
..--++++|+.|+|||||++.+.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 445788999999999999999863
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0015 Score=44.65 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=22.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
....-|++.|++|+||||+++.+...
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 35678999999999999999998643
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00084 Score=48.23 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
-++|+|+.|+|||||++.+.+..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 46799999999999999998653
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0021 Score=45.73 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=22.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.....+++.|++|+|||+|++.+.+.
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHH
Confidence 44557999999999999999999764
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0015 Score=41.51 Aligned_cols=19 Identities=26% Similarity=0.583 Sum_probs=17.1
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030120 20 ILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~ 38 (182)
.+|+|+.|+|||||+.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4789999999999999984
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0015 Score=48.08 Aligned_cols=25 Identities=32% Similarity=0.256 Sum_probs=21.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
+..-.++++|++|+|||||++.+.+
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4455789999999999999999975
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0012 Score=49.56 Aligned_cols=27 Identities=15% Similarity=0.187 Sum_probs=23.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.+.=+++|+|+.|+|||||++.+.+..
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 445579999999999999999998754
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0027 Score=46.19 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=21.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhc
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.....+++++|++|+||||+...+.+
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 34556899999999999999987753
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0014 Score=50.60 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
..=.++++|+.|+|||||++.+.+-.
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34478999999999999999998754
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0017 Score=47.07 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030120 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
.+++.|++|+||||+++.+.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999998876
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0012 Score=50.01 Aligned_cols=22 Identities=23% Similarity=0.222 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030120 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~ 39 (182)
-.++++|+.|+|||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 5678999999999999999964
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0013 Score=50.75 Aligned_cols=26 Identities=35% Similarity=0.349 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
+.=-++++|+.|+|||||++.+.+-.
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44467899999999999999998754
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0024 Score=47.82 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=22.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
+...-|++.||||+|||+|++++.+.
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 45668999999999999999999764
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0018 Score=44.25 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=20.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 030120 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
...+++++|+||+||||+...|..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 467899999999999999998853
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.002 Score=47.23 Aligned_cols=22 Identities=36% Similarity=0.374 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030120 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.++|.|++|+|||+|++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998754
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0017 Score=45.92 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
....+++.|++|+|||++++.+.+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3568999999999999999999764
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0019 Score=44.69 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 030120 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
....+++.|++|+|||++++.+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999965
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0018 Score=46.00 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=21.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhc
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
......+++.|++|+|||++++.+..
T Consensus 64 ~~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 64 ETPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp SCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34556799999999999999986643
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0022 Score=46.34 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030120 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.+++.|++|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998754
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0015 Score=44.34 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030120 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
.+++.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.002 Score=44.05 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=21.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.....|+++|.+|+||||+.+.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4566899999999999999998864
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0016 Score=50.93 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
..=.++++|+.|+|||||++.+.+-.
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 34468999999999999999998754
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0019 Score=50.32 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
+.=.++++|+.|+|||||++.+.+-.
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 34478999999999999999997653
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0027 Score=45.91 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030120 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.+++.|++|+|||++++.+.+.
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999998654
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0016 Score=45.78 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=19.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030120 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.--++|+|++|+|||||+..+.+
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34688999999999999998864
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0019 Score=45.85 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030120 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~ 39 (182)
..|++.|.+|+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999975
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.003 Score=47.16 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=21.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
....-+++.|+||+|||+|++++.+.
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34456999999999999999999753
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0021 Score=42.79 Aligned_cols=26 Identities=19% Similarity=0.219 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
...-++|+|++|+|||+|...|....
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 34568999999999999999997664
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0033 Score=47.08 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=22.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
....--+++.||||+|||+|++++.+.
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 345567999999999999999999754
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0014 Score=45.69 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=21.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
..+...|++.|..|+||||+++.|...
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHh
Confidence 345678999999999999999988654
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.002 Score=47.20 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=18.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 030120 16 KEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~ 38 (182)
..+ .+|+|+.|+|||||++.+.
T Consensus 23 ~g~-~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 23 SGI-TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp SEE-EEEECCTTSSHHHHHHHHH
T ss_pred CCe-EEEECCCCCCHHHHHHHHH
Confidence 344 5699999999999999986
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0022 Score=49.90 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
+.=.++++|+.|+|||||++.+.+-.
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34478999999999999999997653
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0019 Score=46.40 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
..-.+++.|++|+|||+|++.+.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3456899999999999999998653
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0019 Score=49.72 Aligned_cols=23 Identities=35% Similarity=0.238 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.++|+|+.|+|||||++.+.+-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0021 Score=50.24 Aligned_cols=26 Identities=23% Similarity=0.206 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
..=.++++|+.|+|||||++.+.+..
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 34468999999999999999998754
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0018 Score=47.23 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=21.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
...-.++|.|++|+|||+|++.+.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 44557899999999999999998753
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0024 Score=49.23 Aligned_cols=24 Identities=33% Similarity=0.321 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
=.++|+|+.|+|||||++.+.+-.
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999998754
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0014 Score=46.49 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=17.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 030120 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
+..-|+|.|++|+||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998853
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0022 Score=50.14 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
+.=.++++|+.|+|||||++.+.+-.
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 44578999999999999999997654
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0012 Score=41.48 Aligned_cols=26 Identities=8% Similarity=0.158 Sum_probs=21.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.....|++.|++|+|||++.+.+...
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHh
Confidence 34457999999999999999988654
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0024 Score=43.56 Aligned_cols=25 Identities=36% Similarity=0.332 Sum_probs=18.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.+..-|++.|++|+||||+++.+..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567799999999999999999854
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0027 Score=42.28 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030120 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
.|+|.|++|+||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999854
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0033 Score=46.49 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=22.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
....-+++.||||+|||.|++++.+.
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 44557999999999999999999654
|
| >4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.016 Score=43.56 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=20.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHh
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~ 38 (182)
..+..-|+|+|+.++|||+|+|.++
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CCceEEEEEECCCCCchhHHHHHHH
Confidence 3455667799999999999999664
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0024 Score=43.67 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=17.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 030120 18 ARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~ 38 (182)
--++++|++|+|||+|+..+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 357899999999999987774
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0017 Score=50.57 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
+.=.++++|+.|+|||||++.+.+-.
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34478999999999999999987643
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0032 Score=44.75 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
-.+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999998653
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0023 Score=46.62 Aligned_cols=25 Identities=28% Similarity=0.242 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
..--+.|+|++|+|||||+..+.+.
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4446789999999999999999764
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0028 Score=49.58 Aligned_cols=24 Identities=33% Similarity=0.321 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
=.++|+|+.|+|||||++.+.+-.
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999998754
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0044 Score=49.74 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=27.4
Q ss_pred HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 5 FSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 5 ~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
+.++.........-.++++|++|+|||++++.+...
T Consensus 195 i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 195 LERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHH
Confidence 444444444556778999999999999999998653
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0027 Score=45.00 Aligned_cols=23 Identities=39% Similarity=0.535 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030120 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
...+++.|++|+|||++++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0034 Score=44.61 Aligned_cols=110 Identities=18% Similarity=0.216 Sum_probs=60.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc------C-Ccc--cccc---cc-----------cceeeE------E-----EECCE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQM------G-EVV--STIP---TI-----------GFNVET------V-----QYNNI 61 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~------~-~~~--~~~~---t~-----------~~~~~~------~-----~~~~~ 61 (182)
+.-.++++|++|+||||++..+.+ + .+. ...+ +. +..... + ...+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~ 183 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY 183 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence 455789999999999999998852 1 110 0000 00 000000 0 01456
Q ss_pred EEEEEECCCCCCCccc----hhhhcC--CCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030120 62 KFQVWDLGGQTSIRPY----WRCYFP--NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 62 ~~~~~D~~g~~~~~~~----~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
++.++||+|....... ....+. ..+.+++|+|++.. .....++...+ .. -+ ..-+|+||.|...
T Consensus 184 dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~-~~---l~-~~giVltk~D~~~ 253 (296)
T 2px0_A 184 DHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRF-SS---VP-VNQYIFTKIDETT 253 (296)
T ss_dssp SEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTT-SS---SC-CCEEEEECTTTCS
T ss_pred CEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHH-hc---CC-CCEEEEeCCCccc
Confidence 8999999997654321 112332 36788999988754 23333322222 11 11 2356679999764
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0024 Score=45.91 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
...+++.|++|+|||+|++.+...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 457999999999999999999764
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0039 Score=50.06 Aligned_cols=36 Identities=22% Similarity=0.286 Sum_probs=26.6
Q ss_pred HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 5 FSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 5 ~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
+.++.........-+++++|+||+|||++++.+...
T Consensus 189 i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 189 IQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp HHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 344444444455668999999999999999988654
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.004 Score=45.57 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
..-.+++.|++|+|||+|++.+...
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3447999999999999999998653
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0018 Score=50.34 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
+.=.++++|+.|+|||||++.+.+-.
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 34478999999999999999887653
|
| >1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0053 Score=42.82 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030120 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.-.+++.|+||+|||.|+.++..
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHh
Confidence 34599999999999999999976
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0037 Score=44.87 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
....+++.|++|+|||+|++.+...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3457999999999999999999653
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0029 Score=49.44 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.++++|+.|+|||||++.+.+-.
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 37999999999999999998754
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0031 Score=45.01 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=19.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 030120 17 EARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~ 38 (182)
.--++++|++|+||||++..+.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHH
Confidence 3468899999999999999885
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0024 Score=46.64 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=22.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
...-.+++.|++|+|||++++.+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 44557999999999999999998653
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0058 Score=45.55 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=22.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
+..--|++.|+||+|||+|++++.+.
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCCceECCCCchHHHHHHHHHHH
Confidence 44567999999999999999999754
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0021 Score=44.77 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030120 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~ 39 (182)
..+++.|++|+|||+|++.+..
T Consensus 45 ~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHH
Confidence 3488999999999999999965
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0041 Score=41.60 Aligned_cols=19 Identities=26% Similarity=0.583 Sum_probs=16.8
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030120 20 ILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~ 38 (182)
.+|+|+.|+||||++.++.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4788999999999999883
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0038 Score=45.15 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.-|+|+|++|+|||||...|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 46899999999999999988643
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0061 Score=44.38 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030120 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~ 39 (182)
-.+++.|++|+|||++++.+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0047 Score=46.07 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
...-|+++|.+|+||||+.+.+...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4456889999999999999998654
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=96.07 E-value=0.004 Score=44.70 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
..|+|+|++|+|||||...|...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988643
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0034 Score=47.86 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030120 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
-++++|++|+|||+|++.+.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999764
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0049 Score=42.28 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
...|++.|..|+||||+++.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 356899999999999999998653
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0035 Score=48.41 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=20.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 030120 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
+.-.++++|++|+|||||++.+.+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 455799999999999999999864
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0059 Score=44.09 Aligned_cols=24 Identities=17% Similarity=0.301 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.-|+|+|++|+|||+|...|....
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 468999999999999999997543
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0024 Score=54.37 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030120 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
+|+|+|++|+|||||++.+.+
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHhc
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0045 Score=40.26 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
...=+++.|++|+||||+.-.|..+.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHTT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHcC
Confidence 34468999999999999999997653
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0042 Score=50.60 Aligned_cols=36 Identities=22% Similarity=0.347 Sum_probs=25.9
Q ss_pred HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 5 FSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 5 ~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
+.++.........-.++++|++|+|||++++.+...
T Consensus 179 i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 179 IRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp HHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHH
Confidence 334444333344556899999999999999998754
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0057 Score=46.01 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=22.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
...--|++.|+||+|||+|++++.+.
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 55668999999999999999999754
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.004 Score=45.43 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
...+++.|++|+|||+|++.+...
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999998654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 182 | ||||
| d1e0sa_ | 173 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 9e-45 | |
| d1moza_ | 182 | c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea | 2e-43 | |
| d1zj6a1 | 177 | c.37.1.8 (A:2-178) ADP-ribosylation factor {Human | 2e-39 | |
| d1fzqa_ | 176 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 5e-35 | |
| d1ksha_ | 165 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 2e-34 | |
| d1r8sa_ | 160 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 1e-32 | |
| d1azta2 | 221 | c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub | 9e-31 | |
| d1f6ba_ | 186 | c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr | 2e-30 | |
| d2qtvb1 | 166 | c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom | 6e-29 | |
| d2bcjq2 | 200 | c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub | 2e-28 | |
| d1zd9a1 | 164 | c.37.1.8 (A:18-181) ADP-ribosylation factor {Human | 9e-28 | |
| d1upta_ | 169 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 4e-27 | |
| d1zcba2 | 200 | c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub | 7e-24 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 6e-23 | |
| d2fh5b1 | 207 | c.37.1.8 (B:63-269) Signal recognition particle re | 8e-23 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 2e-22 | |
| d1svsa1 | 195 | c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub | 4e-22 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 5e-21 | |
| d2g6ba1 | 170 | c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T | 7e-20 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 2e-19 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 1e-18 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 1e-17 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 2e-17 | |
| d2f7sa1 | 186 | c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T | 4e-17 | |
| d1ek0a_ | 170 | c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces | 3e-15 | |
| d2ew1a1 | 171 | c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta | 5e-14 | |
| d1z0fa1 | 166 | c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta | 5e-14 | |
| d2f9la1 | 175 | c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T | 8e-14 | |
| d1kaoa_ | 167 | c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: | 1e-13 | |
| d1r2qa_ | 170 | c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: | 5e-13 | |
| d2a5ja1 | 173 | c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta | 5e-12 | |
| d1u8za_ | 168 | c.37.1.8 (A:) Ras-related protein RalA {Cotton-top | 7e-12 | |
| d1yzqa1 | 164 | c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta | 9e-12 | |
| d1wmsa_ | 174 | c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: | 1e-11 | |
| d1z08a1 | 167 | c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T | 4e-11 | |
| d2fn4a1 | 173 | c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T | 6e-11 | |
| d1vg8a_ | 184 | c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId | 9e-11 | |
| d1z06a1 | 165 | c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) | 2e-10 | |
| d1z0ja1 | 167 | c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [ | 4e-10 | |
| d1z2aa1 | 164 | c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta | 7e-10 | |
| d1ctqa_ | 166 | c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi | 1e-09 | |
| d2erxa1 | 171 | c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [ | 6e-09 | |
| d1c1ya_ | 167 | c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: | 7e-09 | |
| d1i2ma_ | 170 | c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96 | 4e-08 | |
| d1ky3a_ | 175 | c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y | 5e-08 | |
| d1mh1a_ | 183 | c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96 | 7e-08 | |
| d1kmqa_ | 177 | c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9 | 2e-07 | |
| d1xtqa1 | 167 | c.37.1.8 (A:3-169) GTP-binding protein RheB {Human | 3e-07 | |
| d2cxxa1 | 184 | c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc | 3e-07 | |
| d1udxa2 | 180 | c.37.1.8 (A:157-336) Obg GTP-binding protein middl | 4e-07 | |
| d2erya1 | 171 | c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [ | 7e-07 | |
| d1m7ba_ | 179 | c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T | 8e-07 | |
| d2gjsa1 | 168 | c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax | 8e-07 | |
| d2ngra_ | 191 | c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: | 1e-06 | |
| d1x1ra1 | 169 | c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa | 2e-06 | |
| d2gj8a1 | 161 | c.37.1.8 (A:216-376) Probable tRNA modification GT | 5e-06 | |
| d2atva1 | 168 | c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro | 8e-06 | |
| d1lnza2 | 185 | c.37.1.8 (A:158-342) Obg GTP-binding protein middl | 1e-05 | |
| d1wf3a1 | 178 | c.37.1.8 (A:3-180) GTPase Era, N-terminal domain { | 2e-05 | |
| d2atxa1 | 185 | c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax | 4e-05 | |
| d1mkya1 | 171 | c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal | 7e-05 | |
| d1svia_ | 195 | c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti | 1e-04 | |
| d2bmja1 | 175 | c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H | 3e-04 | |
| d1xzpa2 | 160 | c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog | 4e-04 | |
| d1mkya2 | 186 | c.37.1.8 (A:173-358) Probable GTPase Der, N-termin | 4e-04 | |
| d1egaa1 | 179 | c.37.1.8 (A:4-182) GTPase Era, N-terminal domain { | 5e-04 |
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Score = 143 bits (362), Expect = 9e-45
Identities = 93/172 (54%), Positives = 129/172 (75%)
Query: 7 RMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVW 66
++ S +FGNKE RIL+LGLD AGKTTILY+L++G+ V+TIPT+GFNVETV Y N+KF VW
Sbjct: 2 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVW 61
Query: 67 DLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFAN 126
D+GGQ IRP WR Y+ T+ +I+VVD +D DRI A++E H I+ + E++ A+ LIFAN
Sbjct: 62 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 121
Query: 127 KQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178
KQDLP A+ + E L L +I++R W + +CA G+GL+EG+ WL++ K
Sbjct: 122 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 173
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Score = 140 bits (353), Expect = 2e-43
Identities = 114/179 (63%), Positives = 142/179 (79%), Gaps = 1/179 (0%)
Query: 2 GIMFSRMFSSLFG-NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN 60
G +FS MF L+G NKE RIL+LGLD AGKTTILYRLQ+GEVV+T PTIGFNVET+ Y N
Sbjct: 1 GNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKN 60
Query: 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV 120
+K VWDLGGQTSIRPYWRCY+ +T AVI+VVDS+D DR+ TA +E H +L+EEEL+ A
Sbjct: 61 LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA 120
Query: 121 ALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
L+FANKQD PGAL + VS+ L L ++K+R W+I + AIKGEG+ EG+DWL + +K
Sbjct: 121 LLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE 179
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Score = 130 bits (327), Expect = 2e-39
Identities = 88/177 (49%), Positives = 125/177 (70%), Gaps = 1/177 (0%)
Query: 2 GIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNI 61
GI+F+R++ LF ++E +++++GLDNAGKTTILY+ M EVV T PTIG NVE + NN
Sbjct: 1 GILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNT 59
Query: 62 KFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVA 121
+F +WD+GGQ S+R W Y+ NTE VI VVDS+D +RI +EE + +L E+L+ A
Sbjct: 60 RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL 119
Query: 122 LIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178
LIFANKQD+ + A +S+ L+L IK+ QW I CA+ GEGL +G++W+ + LK
Sbjct: 120 LIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 176
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Score = 118 bits (297), Expect = 5e-35
Identities = 79/174 (45%), Positives = 113/174 (64%), Gaps = 2/174 (1%)
Query: 4 MFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKF 63
+ ++ S+ ++E RIL+LGLDNAGKTT+L +L ++ PT GFN+++VQ K
Sbjct: 5 ILRKLKSA--PDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKL 62
Query: 64 QVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALI 123
VWD+GGQ IRPYWR YF NT+ +IYV+DS+D R + +E +LEEE+L LI
Sbjct: 63 NVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLI 122
Query: 124 FANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177
FANKQDL A + ++E L LH I++R W I A+ GEG+ +GM+W+ +
Sbjct: 123 FANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Score = 117 bits (293), Expect = 2e-34
Identities = 82/164 (50%), Positives = 113/164 (68%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIR 75
+E R+L+LGLDNAGKTTIL + +V + PT+GFN++T+++ K +WD+GGQ S+R
Sbjct: 1 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 60
Query: 76 PYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD 135
YWR YF +T+ +I+VVDS+D R+Q + E ++L EE L GA LIFANKQDLPGAL
Sbjct: 61 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS 120
Query: 136 DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
A+ EALEL I++ W I A+ GE L G+DWL + + S
Sbjct: 121 CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 164
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Score = 112 bits (280), Expect = 1e-32
Identities = 96/159 (60%), Positives = 127/159 (79%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW 78
RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ IRP W
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 61
Query: 79 RCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAA 138
R YF NT+ +I+VVDS+D +R+ A+EE +L E+EL+ AV L+FANKQDLP A++ A
Sbjct: 62 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE 121
Query: 139 VSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177
+++ L LH +++R W I TCA G+GL+EG+DWLSN L
Sbjct: 122 ITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Score = 109 bits (273), Expect = 9e-31
Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 13/127 (10%)
Query: 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74
R+L+LG +GK+TI+ ++++ VV T G Q + + F ++D+GGQ
Sbjct: 4 RATHRLLLLGAGESGKSTIVKQMRILHVV---LTSGIFETKFQVDKVNFHMFDVGGQRDE 60
Query: 75 RPYWRCYFPNTEAVIYVVDSS----------DTDRIQTAKEEFHAILEEEELKGAVALIF 124
R W F + A+I+VV SS T+R+Q A F +I L+ ++F
Sbjct: 61 RRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILF 120
Query: 125 ANKQDLP 131
NKQDL
Sbjct: 121 LNKQDLL 127
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 107 bits (268), Expect = 2e-30
Identities = 51/185 (27%), Positives = 90/185 (48%), Gaps = 13/185 (7%)
Query: 6 SRMFSSL-FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQ 64
S + L K +++ LGLDNAGKTT+L+ L+ + +PT+ E + + F
Sbjct: 1 SSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFT 60
Query: 65 VWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIF 124
+DLGG R W+ Y P ++++VD +D +R+ +KEE +++ +E + LI
Sbjct: 61 TFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILIL 120
Query: 125 ANKQDLPGALDDAAVSEALELH------------KIKNRQWAIFKTCAIKGEGLFEGMDW 172
NK D P A+ + + E L+ ++ R +F +K +G EG W
Sbjct: 121 GNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRW 180
Query: 173 LSNTL 177
++ +
Sbjct: 181 MAQYI 185
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 103 bits (256), Expect = 6e-29
Identities = 56/163 (34%), Positives = 81/163 (49%), Gaps = 7/163 (4%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW 78
++L LGLDNAGKTT+L+ L+ + + PT E + NIKF +DLGG R W
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLW 61
Query: 79 RCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAA 138
+ YFP ++++VD++D +R A+ E A+ ELK +I NK D P A+ +A
Sbjct: 62 KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAE 121
Query: 139 VSEALELHKI-------KNRQWAIFKTCAIKGEGLFEGMDWLS 174
+ AL L R +F + G E WLS
Sbjct: 122 LRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 164
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 102 bits (255), Expect = 2e-28
Identities = 39/195 (20%), Positives = 82/195 (42%), Gaps = 34/195 (17%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIR 75
+E ++L+LG +GK+T + ++++ S +PT G ++ F++ D+GGQ S R
Sbjct: 1 RELKLLLLGTGESGKSTFIKQMRIIH-GSGVPTTGIIEYPFDLQSVIFRMVDVGGQRSER 59
Query: 76 PYWRCYFPNTEAVIYVVDSSDTDR----------IQTAKEEFHAILEEEELKGAVALIFA 125
W F N +++++V S+ D+ ++ +K F I+ + + ++F
Sbjct: 60 RKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFL 119
Query: 126 NKQDL--------------------PGALDDAA---VSEALELHKIKNRQWAIFKTCAIK 162
NK+DL A + ++L+ ++ TCA
Sbjct: 120 NKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATD 179
Query: 163 GEGLFEGMDWLSNTL 177
E + + +T+
Sbjct: 180 TENIRFVFAAVKDTI 194
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Score = 100 bits (248), Expect = 9e-28
Identities = 51/164 (31%), Positives = 94/164 (57%), Gaps = 1/164 (0%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTI-PTIGFNVETVQYNNIKFQVWDLGGQTSI 74
+E + ++GL +GKTT + + G+ + PT+GFN+ + N+ ++WD+GGQ
Sbjct: 1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRF 60
Query: 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL 134
R W Y A++Y+VD++D ++I+ +K E H +L++ +L+G L+ NK+DLPGAL
Sbjct: 61 RSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL 120
Query: 135 DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178
D+ + E + L I++R+ + + + + + WL K
Sbjct: 121 DEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 164
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Score = 98.6 bits (244), Expect = 4e-27
Identities = 109/165 (66%), Positives = 132/165 (80%)
Query: 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74
+E RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVETV Y N+KFQVWDLGG TSI
Sbjct: 3 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSI 62
Query: 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL 134
RPYWRCY+ NT+AVIYVVDS D DRI +K E A+LEEEEL+ A+ ++FANKQD+ A+
Sbjct: 63 RPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM 122
Query: 135 DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
+ ++ +L L +K+R+W IFKT A KG GL E M+WL TLKS
Sbjct: 123 TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 167
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 91.1 bits (225), Expect = 7e-24
Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 12/124 (9%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIR 75
+ +IL+LG +GK+T L ++++ PT G + + N+ F++ D+GGQ S R
Sbjct: 1 RLVKILLLGAGESGKSTFLKQMRIIH--GQDPTKGIHEYDFEIKNVPFKMVDVGGQRSER 58
Query: 76 PYWRCYFPNTEAVIYVVDSSDTD----------RIQTAKEEFHAILEEEELKGAVALIFA 125
W F + +++++V SS+ D R+ + F I+ ++F
Sbjct: 59 KRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFL 118
Query: 126 NKQD 129
NK D
Sbjct: 119 NKTD 122
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 87.5 bits (216), Expect = 6e-23
Identities = 32/165 (19%), Positives = 61/165 (36%), Gaps = 10/165 (6%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNVET----VQYNNIKFQVWDLGGQTS 73
+IL++G GK+ +L R + + I TIG + + + +K Q+WD GQ
Sbjct: 4 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 63
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133
R Y+ +I V D +D K+ F + E + + L+
Sbjct: 64 FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM---- 119
Query: 134 LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178
+ V+ K ++ A + + E L+ ++
Sbjct: 120 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQ 163
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 88.5 bits (218), Expect = 8e-23
Identities = 36/151 (23%), Positives = 61/151 (40%), Gaps = 7/151 (4%)
Query: 20 ILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYN---NIKFQVWDLGGQTSIRP 76
+L +GL ++GKT + RL G+ T +I + + N + DL G S+R
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62
Query: 77 YWRC-YFPNTEAVIYVVDSSDTDR-IQTAKEEFHAILEEEELKGAVA--LIFANKQDLPG 132
+ + AV++VVDS+ R ++ E + +L + LI NKQD+
Sbjct: 63 QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 122
Query: 133 ALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163
A + + LE R +
Sbjct: 123 AKSAKLIQQQLEKELNTLRVTRSAAPSTLDS 153
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 86.7 bits (214), Expect = 2e-22
Identities = 33/166 (19%), Positives = 58/166 (34%), Gaps = 9/166 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIG--FNVETVQYNN--IKFQVWDLGGQTS 73
++L++G GKT +L+R ST I TIG F + T++ + IK Q+WD GQ
Sbjct: 8 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133
R Y+ ++ V D ++ + I E ++
Sbjct: 68 FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR 127
Query: 134 LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
E + +T A + L+ +K+
Sbjct: 128 QVSKERGE----KLALDYGIKFMETSAKANINVENAFFTLARDIKA 169
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 86.6 bits (213), Expect = 4e-22
Identities = 34/195 (17%), Positives = 75/195 (38%), Gaps = 37/195 (18%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIR 75
+E ++L+LG +GK+TI+ ++++ G + ++ F+++D+GGQ S R
Sbjct: 1 REVKLLLLGAGESGKSTIVKQMKIIHE----AGTGIVETHFTFKDLHFKMFDVGGQRSER 56
Query: 76 PYWRCYFPNTEAVIYVVDSSDTDRIQTAK----------EEFHAILEEEELKGAVALIFA 125
W F A+I+ V SD D + + F +I + ++F
Sbjct: 57 KKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFL 116
Query: 126 NKQ-----------------DLPGALDDAAVSEALELH------KIKNRQWAIFKTCAIK 162
NK+ + G+ + ++ + ++ TCA
Sbjct: 117 NKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATD 176
Query: 163 GEGLFEGMDWLSNTL 177
+ + D +++ +
Sbjct: 177 TKNVQFVFDAVTDVI 191
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.0 bits (204), Expect = 5e-21
Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 9/164 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIP-----TIGFNVETVQYNNIKFQVWDLGGQTS 73
+IL++G GK+++L R + +V N K +WD GQ
Sbjct: 9 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 68
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133
R Y+ + VI V D + D + + V ++ NK D
Sbjct: 69 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-- 126
Query: 134 LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177
+ V L + + A +G+ + L +
Sbjct: 127 --NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKI 168
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.9 bits (196), Expect = 7e-20
Identities = 32/166 (19%), Positives = 61/166 (36%), Gaps = 10/166 (6%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST--IPTIGFNVET----VQYNNIKFQVWDLGGQT 72
+++++G GKT +L R + G ++ I T+G + V +K Q+WD GQ
Sbjct: 8 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 67
Query: 73 SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132
R Y+ + A++ + D ++ + I E + A+ L+
Sbjct: 68 RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDS--- 124
Query: 133 ALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178
+ V K +T A G + ++ LK
Sbjct: 125 -AHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK 169
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 79.1 bits (194), Expect = 2e-19
Identities = 34/165 (20%), Positives = 61/165 (36%), Gaps = 9/165 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVV-STIPTIGFNVET----VQYNNIKFQVWDLGGQTS 73
++L++G GK+ +L R I TIG + + + +K Q+WD GQ
Sbjct: 8 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 67
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133
R Y+ + +I V D +D + K I + L+ NK DL
Sbjct: 68 FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT-STVLKLLVGNKCDLK-- 124
Query: 134 LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178
D V + + +T A+ + + ++ +K
Sbjct: 125 -DKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIK 168
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 77.4 bits (189), Expect = 1e-18
Identities = 34/174 (19%), Positives = 61/174 (35%), Gaps = 12/174 (6%)
Query: 17 EARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP 76
+ I++ G N+GKT++L L V T+ + + Y+ + D G +R
Sbjct: 3 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSAADYDGSGVTLVDFPGHVKLRY 61
Query: 77 YWRCYFPNTEAV-----IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVAL---IFANKQ 128
Y V + D ++ T E IL E + I NK
Sbjct: 62 KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKS 121
Query: 129 DLPGALDDAAVSEAL--ELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180
+L A + + +AL E+ K+ R + + + + L+S
Sbjct: 122 ELFTARPPSKIKDALESEIQKVIER-RKKSLNEVERKINEEDYAENTLDVLQST 174
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 73.8 bits (180), Expect = 1e-17
Identities = 26/165 (15%), Positives = 53/165 (32%), Gaps = 9/165 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY-----NNIKFQVWDLGGQTS 73
+IL++G + GKT+ L+R + V+ IK Q+WD GQ
Sbjct: 7 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133
R Y+ I + D ++ + ++ I V L+
Sbjct: 67 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER 126
Query: 134 LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178
+ + + + F+ A + + + L + +
Sbjct: 127 VVSSERGR----QLADHLGFEFFEASAKDNINVKQTFERLVDVIC 167
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.8 bits (180), Expect = 2e-17
Identities = 26/166 (15%), Positives = 50/166 (30%), Gaps = 9/166 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPT-----IGFNVETVQYNNIKFQVWDLGGQTS 73
+ LV+G GK+ +L++ + G + V +K Q+WD GQ
Sbjct: 7 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 66
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133
R R Y+ + V D + + + L K
Sbjct: 67 FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 126
Query: 134 LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
+ + + +T A+ GE + E + + +
Sbjct: 127 EVTFLEASRF----AQENELMFLETSALTGENVEEAFVQCARKILN 168
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.0 bits (178), Expect = 4e-17
Identities = 35/175 (20%), Positives = 63/175 (36%), Gaps = 18/175 (10%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVV-STIPTIG--------------FNVETVQYNNIKF 63
++L LG GKTT LYR + I T+G N + + +
Sbjct: 7 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 66
Query: 64 QVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALI 123
Q+WD GQ R +F + + + D + + + + ++
Sbjct: 67 QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 126
Query: 124 FANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178
NK DLP + +A EL F+T A G+ + + ++ L + +
Sbjct: 127 IGNKADLPDQREVNER-QARELADKYG--IPYFETSAATGQNVEKAVETLLDLIM 178
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 67.8 bits (164), Expect = 3e-15
Identities = 34/165 (20%), Positives = 66/165 (40%), Gaps = 6/165 (3%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNVETVQY----NNIKFQVWDLGGQTS 73
++++LG GK++I+ R + PTIG T + + +KF++WD GQ
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133
Y+ N +A + V D + A+ + E+ K + + NK D+
Sbjct: 65 FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKEL-HEQASKDIIIALVGNKIDMLQE 123
Query: 134 LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178
+ V+ + + F+T A GE + + + +
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP 168
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.4 bits (156), Expect = 5e-14
Identities = 31/164 (18%), Positives = 61/164 (37%), Gaps = 9/164 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST---IPTIGFNVETVQYNN--IKFQVWDLGGQTS 73
+I+++G GKT ++ R G + F ++TV+ N +K Q+WD GQ
Sbjct: 7 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 66
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133
R + Y+ + A+I D + + + E I + K L+
Sbjct: 67 FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERR 126
Query: 134 LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177
+E + + +T A + + + + L+ L
Sbjct: 127 EVSQQRAE----EFSEAQDMYYLETSAKESDNVEKLFLDLACRL 166
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.1 bits (155), Expect = 5e-14
Identities = 31/164 (18%), Positives = 55/164 (33%), Gaps = 9/164 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPT-----IGFNVETVQYNNIKFQVWDLGGQTS 73
+ +++G GK+ +L++ + ++ P G + V IK Q+WD GQ
Sbjct: 6 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 65
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133
R R Y+ + V D + + LI NK DL
Sbjct: 66 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILI-GNKADLEAQ 124
Query: 134 LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177
D EA + + + A GE + + + +
Sbjct: 125 -RDVTYEEAKQFAEENG--LLFLEASAKTGENVEDAFLEAAKKI 165
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.7 bits (154), Expect = 8e-14
Identities = 29/160 (18%), Positives = 57/160 (35%), Gaps = 9/160 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST---IPTIGFNVETVQYNN--IKFQVWDLGGQTS 73
+++++G GK+ +L R E + F ++Q + IK Q+WD GQ
Sbjct: 6 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 65
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133
R Y+ + V D + + + + + + V ++ NK DL
Sbjct: 66 YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDLR-- 122
Query: 134 LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWL 173
AV + + +T A+ + E +
Sbjct: 123 -HLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 161
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.4 bits (153), Expect = 1e-13
Identities = 26/162 (16%), Positives = 53/162 (32%), Gaps = 7/162 (4%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQ----YNNIKFQVWDLGGQ 71
+E +++VLG GK+ + + G + + + + ++ D G
Sbjct: 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT 61
Query: 72 TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131
Y N + I V + Q K I+ + + ++ NK DL
Sbjct: 62 EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121
Query: 132 GALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWL 173
+ + SE L + + +T A + E +
Sbjct: 122 SE-REVSSSEGRALAEEWGCPF--METSAKSKTMVDELFAEI 160
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.0 bits (149), Expect = 5e-13
Identities = 30/172 (17%), Positives = 58/172 (33%), Gaps = 11/172 (6%)
Query: 14 GNKEA--RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGF-----NVETVQYNNIKFQVW 66
GNK ++++LG GK++++ R G+ + + +KF++W
Sbjct: 1 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 67 DLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFAN 126
D GQ Y+ +A I V D ++ + AK + + +AL
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 127 KQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178
+ AV + +T A + E ++ L
Sbjct: 121 ADL----ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.1 bits (142), Expect = 5e-12
Identities = 29/165 (17%), Positives = 50/165 (30%), Gaps = 9/165 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNVET----VQYNNIKFQVWDLGGQTS 73
+ +++G GK+ +L + TIG + IK Q+WD GQ S
Sbjct: 5 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 64
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133
R R Y+ + V D + + + V ++ NK DL
Sbjct: 65 FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS-SNMVIMLIGNKSDLE-- 121
Query: 134 LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178
V + +T A + E + +
Sbjct: 122 -SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIY 165
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Score = 58.8 bits (141), Expect = 7e-12
Identities = 26/165 (15%), Positives = 56/165 (33%), Gaps = 7/165 (4%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFN----VETVQYNNIKFQVWDLGGQTSI 74
+++++G GK+ + + E V + + ++ + D GQ
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL 134
YF + E + V ++ + + IL +E + L+ NK DL
Sbjct: 66 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE--- 122
Query: 135 DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
D VS ++ +T A + + L +++
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.0 bits (139), Expect = 9e-12
Identities = 37/164 (22%), Positives = 64/164 (39%), Gaps = 9/164 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNVETVQY----NNIKFQVWDLGGQTS 73
+++ LG + GKT+++ R +T TIG + + I+ Q+WD GQ
Sbjct: 2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133
R Y ++ A + V D ++ + Q + + E + L+ NK DL
Sbjct: 62 FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLV-GNKTDLA-- 118
Query: 134 LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177
D VS K K +T A G + + ++ L
Sbjct: 119 -DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.0 bits (139), Expect = 1e-11
Identities = 32/172 (18%), Positives = 64/172 (37%), Gaps = 16/172 (9%)
Query: 10 SSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-----TIPTIGFNVETVQYNNIKFQ 64
SSLF ++++LG GK++++ R + + V + + Q
Sbjct: 4 SSLF-----KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQ 58
Query: 65 VWDLGGQTSIRPYWRCYFPNTEAVI---YVVDSSDTDRIQTAKEEFHAILEEEELKGAVA 121
+WD GQ R ++ ++ + V DS + K+EF + +E +
Sbjct: 59 IWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPF 118
Query: 122 LIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWL 173
+I NK D+ + +E + N + F+T A + +
Sbjct: 119 VILGNKIDIS---ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEA 167
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.5 bits (135), Expect = 4e-11
Identities = 26/164 (15%), Positives = 56/164 (34%), Gaps = 9/164 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNN-----IKFQVWDLGGQTS 73
++++LG GKT+++ R + T + N + +WD GQ
Sbjct: 5 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 64
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133
Y+ ++ I V D +D D Q K + + + + ++
Sbjct: 65 FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKER 124
Query: 134 LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177
+E+ ++ + T A + +G+ E L +
Sbjct: 125 HVSIQEAESY----AESVGAKHYHTSAKQNKGIEELFLDLCKRM 164
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.2 bits (134), Expect = 6e-11
Identities = 26/168 (15%), Positives = 53/168 (31%), Gaps = 7/168 (4%)
Query: 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYN----NIKFQVWDLGG 70
++ +++V+G GK+ + + VS + T + + + D G
Sbjct: 4 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAG 63
Query: 71 QTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDL 130
Q Y + V +D + F IL ++ ++ NK DL
Sbjct: 64 QEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL 123
Query: 131 PGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178
V + + A F+ A + E + L ++
Sbjct: 124 E---SQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVR 168
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 55.9 bits (133), Expect = 9e-11
Identities = 22/164 (13%), Positives = 56/164 (34%), Gaps = 5/164 (3%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE-VVSTIPTIGFNVETVQYN----NIKFQVWDLGGQTS 73
++++LG GKT+++ + + TIG + T + + Q+WD GQ
Sbjct: 4 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 63
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133
+ ++ + + V D + + +T L + + F +
Sbjct: 64 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 123
Query: 134 LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177
+ ++ + F+T A + + + ++
Sbjct: 124 ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 167
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Score = 54.7 bits (130), Expect = 2e-10
Identities = 27/148 (18%), Positives = 52/148 (35%), Gaps = 9/148 (6%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDL------GGQT 72
+I+V+G N GKT + YR G + +I + + G +
Sbjct: 4 KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 63
Query: 73 SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132
+ + Y+ N AV++V D ++ + + ++ NK DL
Sbjct: 64 FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS 123
Query: 133 ALDDAAVSEALELHKIKNRQWAIFKTCA 160
A+ A + + +F+T A
Sbjct: 124 AIQVPT-DLAQKFADTHS--MPLFETSA 148
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 53.9 bits (128), Expect = 4e-10
Identities = 30/169 (17%), Positives = 58/169 (34%), Gaps = 9/169 (5%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIP-----TIGFNVETVQYNNIKFQVWDLGG 70
+E ++ +LG GK++I++R I + Q KF +WD G
Sbjct: 3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 62
Query: 71 QTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDL 130
R Y+ + A I V D + + T K + + VA+ +
Sbjct: 63 LERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIA--GNKCD 120
Query: 131 PGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
+ + +A + + + +T A + E +S + S
Sbjct: 121 LTDVREVMERDAKDYADSIHAIF--VETSAKNAININELFIEISRRIPS 167
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 53.2 bits (126), Expect = 7e-10
Identities = 25/160 (15%), Positives = 55/160 (34%), Gaps = 10/160 (6%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNI-----KFQVWDLGGQTS 73
+++V+G GK++++ R G + + + +WD GQ
Sbjct: 4 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133
+ Y+ +A + V ++D + + E+ + NK DL
Sbjct: 64 FDAITKAYYRGAQACVLVFSTTDRESFE--AISSWREKVVAEVGDIPTALVQNKIDLL-- 119
Query: 134 LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWL 173
DD+ + K + ++T + + E +L
Sbjct: 120 -DDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 158
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.7 bits (125), Expect = 1e-09
Identities = 27/167 (16%), Positives = 55/167 (32%), Gaps = 8/167 (4%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNVETVQYNNIK---FQVWDLGGQ 71
E +++V+G GK+ + +L V PTI + + + + D GQ
Sbjct: 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ 61
Query: 72 TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131
Y E + V ++T + + I ++ ++ NK DL
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA 121
Query: 132 GALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178
V ++ +T A +G+ + L ++
Sbjct: 122 ----ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.8 bits (120), Expect = 6e-09
Identities = 29/166 (17%), Positives = 55/166 (33%), Gaps = 6/166 (3%)
Query: 17 EARILVLGLDNAGKTTILYRLQMGE----VVSTIPTIGFNVETVQYNNIKFQVWDLGGQT 72
+ R+ V G GK++++ R G + T+ V + + Q+ D G
Sbjct: 2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSH 61
Query: 73 SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132
R A I V + ++ K + I E + ++ ++ +
Sbjct: 62 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121
Query: 133 ALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178
+ SEA L + + +T A + E L N K
Sbjct: 122 PSREVQSSEAEALARTWKCAF--METSAKLNHNVKELFQELLNLEK 165
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.4 bits (119), Expect = 7e-09
Identities = 27/167 (16%), Positives = 52/167 (31%), Gaps = 6/167 (3%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNVE---TVQYNNIKFQVWDLGGQ 71
+E +++VLG GK+ + + G V PTI + V ++ D G
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 72 TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131
Y N + V + ++ IL ++ + ++ NK DL
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121
Query: 132 GALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178
+ N + ++ A + E L +
Sbjct: 122 DERVVGKEQGQNLARQWCNCAF--LESSAKSKINVNEIFYDLVRQIN 166
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.1 bits (113), Expect = 4e-08
Identities = 30/164 (18%), Positives = 59/164 (35%), Gaps = 12/164 (7%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST-IPTIGFNVETVQYN----NIKFQVWDLGGQTS 73
+++++G GKTT + R GE + T+G V + ++ IKF VWD GQ
Sbjct: 5 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133
Y+ + I + D + + ++ + ++ NK D+
Sbjct: 65 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKD- 121
Query: 134 LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177
+A + + + + A + WL+ L
Sbjct: 122 ----RKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 161
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.1 bits (113), Expect = 5e-08
Identities = 31/164 (18%), Positives = 56/164 (34%), Gaps = 10/164 (6%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTI-PTIG-----FNVETVQYNNIKFQVWDLGGQT 72
++++LG GKT++++R + TIG V QVWD GQ
Sbjct: 4 KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 63
Query: 73 SIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKG---AVALIFANKQD 129
+ ++ + + V D ++ + K L + +I NK D
Sbjct: 64 RFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKID 123
Query: 130 LPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWL 173
+ + A EL K +F T A + + +
Sbjct: 124 AEESKKIVSEKSAQELAK-SLGDIPLFLTSAKNAINVDTAFEEI 166
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.1 bits (113), Expect = 7e-08
Identities = 25/175 (14%), Positives = 50/175 (28%), Gaps = 21/175 (12%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY----NNIKFQVWDLGGQ 71
+ + +V+G GKT +L F+ + + +WD GQ
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 72 TSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131
+P T+ + + + +++ + ++ K DL
Sbjct: 64 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 122
Query: 132 GALDDAAVSEALELHKIKNRQWAI-------------FKTCAIKGEGLFEGMDWL 173
DD E L+ K+ + + A+ GL D
Sbjct: 123 ---DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 174
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.9 bits (110), Expect = 2e-07
Identities = 24/170 (14%), Positives = 58/170 (34%), Gaps = 15/170 (8%)
Query: 18 ARILVLGLDNAGKTTILYRLQMGEVV-STIPTIGFN---VETVQYNNIKFQVWDLGGQTS 73
+++++G GKT +L + +PT+ N V ++ +WD G
Sbjct: 3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED 62
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133
+P+T+ ++ D ++ E++ ++ ++ NK+DL
Sbjct: 63 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRND 121
Query: 134 LDDAAVSEALELHKIKNRQW----------AIFKTCAIKGEGLFEGMDWL 173
++ +K + + A +G+ E +
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 171
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (108), Expect = 3e-07
Identities = 28/163 (17%), Positives = 59/163 (36%), Gaps = 7/163 (4%)
Query: 15 NKEARILVLGLDNAGKTTILYRLQMGEVVST----IPTIGFNVETVQYNNIKFQVWDLGG 70
+K +I +LG + GK+++ + G+ V + I + TV Q+ D G
Sbjct: 2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAG 61
Query: 71 QTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDL 130
Q + + Y + I V + + K +L+ ++ NK+DL
Sbjct: 62 QDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL 121
Query: 131 PGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWL 173
+ E L + N + ++ A + + + +
Sbjct: 122 HME-RVISYEEGKALAESWNAAF--LESSAKENQTAVDVFRRI 161
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Score = 46.2 bits (108), Expect = 3e-07
Identities = 26/183 (14%), Positives = 54/183 (29%), Gaps = 23/183 (12%)
Query: 18 ARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP- 76
A I+ G N GK+T++YRL G+ V G + ++ ++ D+ G +
Sbjct: 1 ATIIFAGRSNVGKSTLIYRL-TGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGL 59
Query: 77 --------------YWRCYFPNTEAVIYVVDSSDTDRIQTA------KEEFHAILEEEEL 116
+ N + + VVD I +
Sbjct: 60 PKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE 119
Query: 117 KGAVALIFANKQDLPGALDDAAVSEALELHK-IKNRQWAIFKTCAIKGEGLFEGMDWLSN 175
++ NK D + + A + + A G+ + + +
Sbjct: 120 LDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFE 179
Query: 176 TLK 178
++
Sbjct: 180 VIR 182
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Score = 45.8 bits (107), Expect = 4e-07
Identities = 31/174 (17%), Positives = 61/174 (35%), Gaps = 18/174 (10%)
Query: 18 ARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE-----TVQYNNIKFQVWDLGGQT 72
A + ++G NAGK+++L + P + +F + D+ G
Sbjct: 2 ADVGLVGYPNAGKSSLLAAM-TRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGII 60
Query: 73 SIRPYWR-------CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFA 125
+ + T ++YV+D++D + L +L+
Sbjct: 61 EGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVAL 120
Query: 126 NKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179
NK DL A+++AL + + A+ G GL + L ++S
Sbjct: 121 NKVDLLEEEAVKALADALAREGLA-----VLPVSALTGAGLPALKEALHALVRS 169
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.0 bits (105), Expect = 7e-07
Identities = 22/164 (13%), Positives = 50/164 (30%), Gaps = 7/164 (4%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFN----VETVQYNNIKFQVWDLGGQTSI 74
R++V+G GK+ + + V+ + + + + D GQ
Sbjct: 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEF 66
Query: 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL 134
Y E + V +D + + IL ++ ++ NK DL
Sbjct: 67 GAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLD--- 123
Query: 135 DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178
V++ + + + A + + L ++
Sbjct: 124 HQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIR 167
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.0 bits (105), Expect = 8e-07
Identities = 25/143 (17%), Positives = 53/143 (37%), Gaps = 5/143 (3%)
Query: 18 ARILVLGLDNAGKTTILYRLQMGE-VVSTIPTIGFNVETVQYNNIK---FQVWDLGGQTS 73
+I+V+G GKT +L+ + +PT+ N + + +WD G
Sbjct: 3 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 62
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133
+P+++AV+ D S + + + +++ ++E + L+ K DL
Sbjct: 63 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLV-GCKSDLRTD 121
Query: 134 LDDAAVSEALELHKIKNRQWAIF 156
+ + Q A
Sbjct: 122 VSTLVELSNHRQTPVSYDQGANM 144
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (104), Expect = 8e-07
Identities = 12/160 (7%), Positives = 36/160 (22%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYW 78
++L+LG GK+ + E G + + + +
Sbjct: 3 KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGR 62
Query: 79 RCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAA 138
V + ++ ++ + + + +
Sbjct: 63 WLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSRE 122
Query: 139 VSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178
VS +T A + + + ++
Sbjct: 123 VSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIR 162
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.6 bits (104), Expect = 1e-06
Identities = 27/170 (15%), Positives = 51/170 (30%), Gaps = 17/170 (10%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQYNNIK---FQVWDLGGQTSI 74
+ +V+G GKT +L + S +PT+ N + ++D GQ
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL 134
+P T+ + + KE++ + K L+ + DL
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLV-GTQIDLRDDP 123
Query: 135 DDAAV-----------SEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWL 173
A +L + + A+ +GL D
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKA-VKYVECSALTQKGLKNVFDEA 172
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.9 bits (102), Expect = 2e-06
Identities = 23/150 (15%), Positives = 42/150 (28%), Gaps = 7/150 (4%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVST----IPTIGFNVETVQYNNIKFQVWDLGGQTSI 74
+++V+G GK+ + + V I + V D GQ
Sbjct: 6 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEF 65
Query: 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL 134
Y + + V +D + IL ++ + ++ ANK DL
Sbjct: 66 SAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM--- 122
Query: 135 DDAAVSEALELHKIKNRQWAIFKTCAIKGE 164
V+ +T A
Sbjct: 123 HLRKVTRDQGKEMATKYNIPYIETSAKDPP 152
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Score = 42.4 bits (98), Expect = 5e-06
Identities = 23/161 (14%), Positives = 51/161 (31%), Gaps = 4/161 (2%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKF--QVWDLGGQTSIRP 76
++++ G NAGK+++L L E G + ++ + + +
Sbjct: 3 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREA 62
Query: 77 YWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD 136
E ++ +D A+ E +A + A
Sbjct: 63 SDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKA 122
Query: 137 AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177
E L + ++ A+ + A GEG+ + L ++
Sbjct: 123 DITGETLGMSEVNG--HALIRLSARTGEGVDVLRNHLKQSM 161
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.9 bits (97), Expect = 8e-06
Identities = 24/152 (15%), Positives = 48/152 (31%), Gaps = 6/152 (3%)
Query: 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGG--QTS 73
E ++ + G GK+ ++ R + PT+ + + ++
Sbjct: 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQE 61
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133
+ E + V D +D + + + E ++ K ++ NK DL
Sbjct: 62 DTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD-- 119
Query: 134 LDDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165
VS A ++ A GEG
Sbjct: 120 -HSRQVSTEEGEKLATELACAFYECSACTGEG 150
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Score = 41.8 bits (97), Expect = 1e-05
Identities = 30/173 (17%), Positives = 60/173 (34%), Gaps = 10/173 (5%)
Query: 18 ARILVLGLDNAGKTTILYRL--QMGEVVSTIP-TIGFNVETVQY-NNIKFQVWDLGGQTS 73
A + ++G + GK+T+L + ++ T+ N+ V+ + F + DL G
Sbjct: 2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIE 61
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP-- 131
I + E + + ++ + P
Sbjct: 62 GAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQI 121
Query: 132 ---GALDDAAVSEALELHKIK-NRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180
+D +E LE K K + +F A+ EGL E + ++N L++
Sbjct: 122 IVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENT 174
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Score = 40.9 bits (94), Expect = 2e-05
Identities = 21/173 (12%), Positives = 47/173 (27%), Gaps = 20/173 (11%)
Query: 20 ILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY------------NNIKFQVWD 67
+ ++G N GK+T+L L +V P + ++ +
Sbjct: 8 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM 67
Query: 68 LGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANK 127
+ + AV++VVD + ++ + +
Sbjct: 68 DALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDA 127
Query: 128 QDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180
P EA++ + + A+ + E L + G
Sbjct: 128 AKYP--------EEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALMPEG 172
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (92), Expect = 4e-05
Identities = 30/169 (17%), Positives = 51/169 (30%), Gaps = 15/169 (8%)
Query: 19 RILVLGLDNAGKTTILYRLQMGE----VVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSI 74
+ +V+G GKT +L V T+ TV ++D GQ
Sbjct: 11 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY 70
Query: 75 RPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL 134
+P T+ + + Q KEE+ L+E L+ + DL
Sbjct: 71 DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDP 129
Query: 135 DDAAVSEALELHKI----------KNRQWAIFKTCAIKGEGLFEGMDWL 173
A ++ I + + A+ +GL D
Sbjct: 130 KTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEA 178
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 39.4 bits (90), Expect = 7e-05
Identities = 17/164 (10%), Positives = 46/164 (28%), Gaps = 3/164 (1%)
Query: 18 ARILVLGLDNAGKTTILYRL--QMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIR 75
A +L++G N GK+T+ +L + +V + + +
Sbjct: 1 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFD 60
Query: 76 PYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD 135
+ V + + + E+E L + + + +
Sbjct: 61 NPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAE 120
Query: 136 DAAVSEALELHKIKNRQWA-IFKTCAIKGEGLFEGMDWLSNTLK 178
+ E ++ + + A L ++ + L+
Sbjct: 121 NLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLE 164
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Score = 38.6 bits (88), Expect = 1e-04
Identities = 19/170 (11%), Positives = 45/170 (26%), Gaps = 10/170 (5%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVS-----TIPTIGFNVETVQYNNIKFQVWDLGGQTS 73
I + G N GK++ + L + ++ T N + V G
Sbjct: 25 EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKV 84
Query: 74 IRPYWRCYFPNTEAVIYVVDSSDTDRIQT-----AKEEFHAILEEEELKGAVALIFANKQ 128
+ + E I + + + E + G ++ A K
Sbjct: 85 SKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKA 144
Query: 129 DLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178
D ++ + + + + + +G E + +
Sbjct: 145 DKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMIN 194
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (86), Expect = 3e-04
Identities = 22/160 (13%), Positives = 49/160 (30%), Gaps = 4/160 (2%)
Query: 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIR 75
E R+ VLG +GK+++++R G T + + Q + +
Sbjct: 4 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVD--GQTHLVLIREEAG 61
Query: 76 PYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEEL--KGAVALIFANKQDLPGA 133
+ +AVI+V D + Q + G + + + +
Sbjct: 62 APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISAS 121
Query: 134 LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWL 173
++ + ++TCA G + +
Sbjct: 122 SPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEV 161
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Score = 36.9 bits (84), Expect = 4e-04
Identities = 27/169 (15%), Positives = 55/169 (32%), Gaps = 28/169 (16%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYN--------------NIKFQ 64
R++++G N GK+T+L RL + G + + ++ +
Sbjct: 2 RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSE 61
Query: 65 VWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIF 124
DL + I + + V++V+D+S + K
Sbjct: 62 TNDLVERLGIERTLQE-IEKADIVLFVLDASSPLDEEDRKILERI-------------KN 107
Query: 125 ANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWL 173
+ +D E+ + K A+KGEGL + + +
Sbjct: 108 KRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGLEKLEESI 156
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 37.0 bits (84), Expect = 4e-04
Identities = 28/174 (16%), Positives = 54/174 (31%), Gaps = 13/174 (7%)
Query: 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGF----NVETVQYNNIKFQVWDLGGQTSI 74
++ ++G N GK+T+ + E P G + V + K+ D G
Sbjct: 10 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRK 69
Query: 75 RPYWRCYFPNTEAVIYVVDSSDTDRI-------QTAKEEFHAILEEEELKGAVALIFANK 127
V D + Q + + E +G +++ NK
Sbjct: 70 SRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNK 129
Query: 128 QDLPGALDDAAVSEALEL-HKIKNRQWA-IFKTCAIKGEGLFEGMDWLSNTLKS 179
DL + K+ ++ + T A KG + +D ++ S
Sbjct: 130 WDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS 183
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 37.0 bits (84), Expect = 5e-04
Identities = 23/168 (13%), Positives = 48/168 (28%), Gaps = 9/168 (5%)
Query: 20 ILVLGLDNAGKTTILYRL--QMGEVVSTIP-TIGFNVETVQYNNIKFQVWDLGGQTSIRP 76
I ++G N GK+T+L +L Q + S T + + ++ +
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 67
Query: 77 YWRCYFPNTEAVIYVVDSSDTDRIQTAKEEF----HAILEEEELKGAVALIFANKQDLPG 132
+A + + + +L + A ++ NK D
Sbjct: 68 KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQ 127
Query: 133 ALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180
+ A + L+ + I A G + + L
Sbjct: 128 --EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEA 173
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 182 | |||
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 100.0 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 100.0 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 100.0 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 100.0 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 100.0 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 100.0 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 100.0 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 100.0 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 100.0 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 100.0 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 100.0 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 100.0 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 100.0 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 100.0 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 100.0 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 100.0 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 100.0 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 100.0 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.98 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.98 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.97 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.97 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.97 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.97 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.96 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.96 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.95 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.95 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.95 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.94 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.94 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.94 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.94 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.93 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.93 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.93 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 99.92 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.92 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.92 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.91 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.91 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.91 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.91 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.9 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.88 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.87 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.86 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.85 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.83 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.82 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.82 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.82 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.81 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.8 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.71 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 99.67 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 99.64 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.61 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.6 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 99.59 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 99.27 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 99.24 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 99.23 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 99.22 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 99.15 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 99.1 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.59 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.54 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.53 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.42 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 98.39 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 98.26 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 98.23 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.18 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 98.16 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 98.15 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.09 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 98.07 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.96 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.92 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.88 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.83 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.82 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 97.75 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.7 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.69 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 97.68 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 97.68 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 97.64 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.64 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 97.63 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 97.63 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.61 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.6 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 97.59 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 97.58 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 97.56 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 97.55 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.55 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 97.52 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.52 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 97.51 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 97.45 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 97.45 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 97.43 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 97.43 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 97.43 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.43 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 97.42 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.41 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.41 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 97.41 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 97.39 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 97.39 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 97.38 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 97.37 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 97.37 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 97.37 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 97.37 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 97.36 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 97.36 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 97.34 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.33 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 97.32 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 97.31 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 97.31 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 97.31 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.3 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 97.29 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 97.29 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 97.26 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.25 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 97.24 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 97.23 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 97.22 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 97.22 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.2 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 97.2 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 97.19 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 97.19 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 97.18 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 97.18 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 97.18 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 97.17 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 97.16 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 97.16 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 97.16 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 97.13 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 97.12 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.11 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 97.1 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 97.06 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 97.04 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 97.01 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 96.98 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.96 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.95 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 96.93 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.92 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 96.92 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.88 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 96.84 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 96.82 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.82 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.78 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.78 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.75 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 96.62 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 96.58 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.57 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 96.51 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.51 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 96.49 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 96.43 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 96.41 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 96.37 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.3 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 96.25 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.2 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 96.12 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 96.1 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 96.09 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 96.07 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 96.06 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 96.01 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 96.0 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 95.96 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 95.92 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.91 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 95.89 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 95.89 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 95.86 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 95.83 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 95.82 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 95.81 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.77 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 95.74 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.69 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 95.66 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 95.58 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.58 | |
| d1c9ka_ | 180 | Adenosylcobinamide kinase/adenosylcobinamide phosp | 95.57 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 95.51 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 95.46 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.44 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 95.44 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 95.4 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 95.33 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 95.31 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.24 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 95.14 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 95.12 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 95.11 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 95.05 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 95.04 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 94.88 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 94.72 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 94.71 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 94.67 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 94.62 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 94.59 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 94.5 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 94.2 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 94.2 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 93.38 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 93.07 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 93.01 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 92.89 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 92.5 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 91.09 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 90.86 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 90.08 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 89.87 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 89.74 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 89.6 | |
| d1xx6a1 | 141 | Thymidine kinase, TK1, N-terminal domain {Clostrid | 89.24 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 89.05 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 89.03 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 88.56 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 88.13 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 88.03 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 87.65 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 87.6 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 87.44 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 86.91 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 86.81 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 86.71 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 85.72 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 84.62 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 83.03 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 82.41 |
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=100.00 E-value=3.8e-38 Score=209.46 Aligned_cols=179 Identities=63% Similarity=1.076 Sum_probs=157.1
Q ss_pred hhhHHHHhhhh-cCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhh
Q 030120 2 GIMFSRMFSSL-FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRC 80 (182)
Q Consensus 2 ~~~~~~~~~~~-~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 80 (182)
|+.++++++.. ...+.+||+++|++|||||||++++.++.+....||.+.........+..+.+||+||++.+...+..
T Consensus 1 ~~~~~~~~~~l~~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 80 (182)
T d1moza_ 1 GNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRC 80 (182)
T ss_dssp CHHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGG
T ss_pred ChhHHHHHHHHhCCCceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceEEEEEeeCCEEEEEEecccccccchhHHh
Confidence 46788888766 56889999999999999999999999888887888888888888899999999999999999999999
Q ss_pred hcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecC
Q 030120 81 YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCA 160 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (182)
++..++++++|+|+++..++.....|+...+......+.|+++|+||+|+.+.....++...+........++++++|||
T Consensus 81 ~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA 160 (182)
T d1moza_ 81 YYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSA 160 (182)
T ss_dssp TTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBG
T ss_pred hhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHHHhhCCCEEEEEEC
Confidence 99999999999999999999999999888877766678999999999999877778888888877666777889999999
Q ss_pred CCCCCHHHHHHHHHHHHhcC
Q 030120 161 IKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 161 ~~~~~v~~l~~~i~~~~~~~ 180 (182)
++|+|++++|++|.+.+.+.
T Consensus 161 ~~g~gv~e~~~~l~~~i~~~ 180 (182)
T d1moza_ 161 IKGEGITEGLDWLIDVIKEE 180 (182)
T ss_dssp GGTBTHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHc
Confidence 99999999999999988753
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=100.00 E-value=1.5e-37 Score=204.96 Aligned_cols=171 Identities=54% Similarity=1.055 Sum_probs=155.0
Q ss_pred HHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCC
Q 030120 7 RMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTE 86 (182)
Q Consensus 7 ~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d 86 (182)
+++++.++.+.+||+++|++|||||||++++.++.+....+|.+............+.+||+||++.....+..+++.++
T Consensus 2 ~~~~~~~~~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 81 (173)
T d1e0sa_ 2 KVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQ 81 (173)
T ss_dssp HHHHHHHTTCCEEEEEEEETTSSHHHHHHHTTCCCCEEEEEETTEEEEEEEETTEEEEEEEESCCGGGHHHHGGGTTTCC
T ss_pred hhhhhhhCCCeEEEEEECCCCCCHHHHHHHHhcCCCCCccceeeeeEEEeeccceeeEEecCCCcchhhhHHHhhhcccc
Confidence 45667778899999999999999999999999988888888888888888889999999999999999999999999999
Q ss_pred eEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030120 87 AVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
++++|+|+++.+++.....|+...+......+.|+++++||+|+.+.....++...++.......++++++|||++|+||
T Consensus 82 ~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv 161 (173)
T d1e0sa_ 82 GLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 161 (173)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTH
T ss_pred eEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCH
Confidence 99999999999999999999988887666678999999999999887778888888877767777899999999999999
Q ss_pred HHHHHHHHHHH
Q 030120 167 FEGMDWLSNTL 177 (182)
Q Consensus 167 ~~l~~~i~~~~ 177 (182)
+++|++|.+.+
T Consensus 162 ~e~~~~l~~~~ 172 (173)
T d1e0sa_ 162 YEGLTWLTSNY 172 (173)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhc
Confidence 99999998865
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=100.00 E-value=8.5e-37 Score=199.88 Aligned_cols=164 Identities=50% Similarity=0.899 Sum_probs=147.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (182)
+.+||+++|++|+|||||+++|.+..+....||.+.....+...+..+.+||+||++.+...+..+++.++++++|+|++
T Consensus 1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~ 80 (165)
T d1ksha_ 1 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSA 80 (165)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETT
T ss_pred CcEEEEEECCCCCCHHHHHHHHcCCCCCcccceEeeeeeeccccccceeeeecCcchhhhhHHHhhhhhhhcceeeeecc
Confidence 46899999999999999999999998888889999888889999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHH
Q 030120 96 DTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 175 (182)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 175 (182)
+..++.....++...+......+.|+++|+||+|+.+.....+....+.........+++++|||++|+|++++|++|.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 160 (165)
T d1ksha_ 81 DRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLD 160 (165)
T ss_dssp CGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred cchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999988888877666678999999999999877777777766665555667889999999999999999999999
Q ss_pred HHhc
Q 030120 176 TLKS 179 (182)
Q Consensus 176 ~~~~ 179 (182)
.+.+
T Consensus 161 ~i~~ 164 (165)
T d1ksha_ 161 DISS 164 (165)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8764
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=100.00 E-value=4.3e-37 Score=203.32 Aligned_cols=165 Identities=47% Similarity=0.861 Sum_probs=149.5
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.+++.+||+++|++|+|||||++++.++.+....++.++....+.+.+..+.+||++|++.+...+..++..+|++++|+
T Consensus 12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 91 (176)
T d1fzqa_ 12 APDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVI 91 (176)
T ss_dssp CCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEE
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeeeeeEEEeccCCeeEeEeeccccccchhHHHHHhhccceeEEee
Confidence 45788999999999999999999999999888788888888888899999999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 172 (182)
|+++..++.....++..+.......+.|+++++||+|+.+.....++.+.+.........+++++|||++|+|++++|++
T Consensus 92 d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~e~~~~ 171 (176)
T d1fzqa_ 92 DSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNW 171 (176)
T ss_dssp ETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHH
T ss_pred ccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999988887777678999999999999887777777777776666677889999999999999999999
Q ss_pred HHHHH
Q 030120 173 LSNTL 177 (182)
Q Consensus 173 i~~~~ 177 (182)
|.+.+
T Consensus 172 l~~~i 176 (176)
T d1fzqa_ 172 VCKNV 176 (176)
T ss_dssp HHHTC
T ss_pred HHhcC
Confidence 98753
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=100.00 E-value=8.7e-37 Score=199.62 Aligned_cols=162 Identities=31% Similarity=0.684 Sum_probs=148.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
+++||+++|++|+|||||++++.++.+.. ..||.+.+...+..++..+.+||+||++.+...+..++..++++++|+|+
T Consensus 1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 80 (164)
T d1zd9a1 1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDA 80 (164)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEET
T ss_pred CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeeeeeeeeEEEEEeeccccccccccccccccccchhhccccc
Confidence 36899999999999999999999988876 77899999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHH
Q 030120 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 174 (182)
++.+++.....++..+......++.|+++|+||.|+.+.....++.+.++.......+++++++||++|.|++++|++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~ 160 (164)
T d1zd9a1 81 ADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 160 (164)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred ccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHHHHH
Confidence 99999999999999998877778899999999999987777888888887777777889999999999999999999998
Q ss_pred HHH
Q 030120 175 NTL 177 (182)
Q Consensus 175 ~~~ 177 (182)
+.+
T Consensus 161 ~~~ 163 (164)
T d1zd9a1 161 QHS 163 (164)
T ss_dssp HTC
T ss_pred Hcc
Confidence 854
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-35 Score=195.20 Aligned_cols=157 Identities=14% Similarity=0.107 Sum_probs=113.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccccccccccee-eEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNV-ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
+||+++|++|+|||||++++.+..+....++....+ ..+..+ ...+.+||++|++.+...+..+++.+|++++|||+
T Consensus 2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~ 81 (168)
T d2gjsa1 2 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSV 81 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC---------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEET
T ss_pred eEEEEECCCCcCHHHHHHHHhCCccCCcCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceeccc
Confidence 799999999999999999999887766555554333 334443 46888999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHH
Q 030120 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDW 172 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 172 (182)
+++.++..+..|+..+.........|+++|+||+|+.+.. ...+... .+...++++++|||++|.|++++|+.
T Consensus 82 t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~e~Sak~~~~v~~~f~~ 156 (168)
T d2gjsa1 82 TDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRA-----CAVVFDCKFIETSAALHHNVQALFEG 156 (168)
T ss_dssp TCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHH-----HHHHHTSEEEECBTTTTBSHHHHHHH
T ss_pred cccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHH-----HHHhcCCEEEEEeCCCCcCHHHHHHH
Confidence 9999999999999988766555678999999999996532 2222221 22334568999999999999999999
Q ss_pred HHHHHhc
Q 030120 173 LSNTLKS 179 (182)
Q Consensus 173 i~~~~~~ 179 (182)
|++.+..
T Consensus 157 l~~~i~~ 163 (168)
T d2gjsa1 157 VVRQIRL 163 (168)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987654
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-35 Score=195.38 Aligned_cols=163 Identities=17% Similarity=0.218 Sum_probs=131.3
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccc-ceeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeE
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIG-FNVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
++.+.+||+++|++|+|||||++++.++.+.. ..+|.. .....+.+++ ..+.+||++|++.+...+..+++.+|++
T Consensus 2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~ 81 (173)
T d2fn4a1 2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 81 (173)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceee
Confidence 45678999999999999999999999988877 444443 2233444543 6778899999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030120 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
++|||++++.++.....|+..+.+.....+.|+++|+||+|+.+.. ...+.... +...++++++|||++|.||
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~e~Sak~g~gv 156 (173)
T d2fn4a1 82 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF-----GASHHVAYFEASAKLRLNV 156 (173)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHH-----HHHTTCEEEECBTTTTBSH
T ss_pred eeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHH-----HHhcCCEEEEEeCCCCcCH
Confidence 9999999999999999999988776655788999999999986432 22222222 2234578999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 030120 167 FEGMDWLSNTLKSG 180 (182)
Q Consensus 167 ~~l~~~i~~~~~~~ 180 (182)
+++|+.|++.+.+.
T Consensus 157 ~e~f~~l~~~i~k~ 170 (173)
T d2fn4a1 157 DEAFEQLVRAVRKY 170 (173)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987653
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.3e-35 Score=192.06 Aligned_cols=158 Identities=19% Similarity=0.324 Sum_probs=128.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEE----CCEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
.+||+++|++|+|||||++++.++.+.. +.||.+.......+ ....+.+|||+|++.+...+..++++++++++|
T Consensus 3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 82 (170)
T d1i2ma_ 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM 82 (170)
T ss_dssp EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence 5799999999999999999999988777 67788766555444 457899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 171 (182)
||+++++|++.+..|+..+.+.. ++.|+++|+||+|+.+.....+ ....+...+++++++||++|.|++++|+
T Consensus 83 ~d~~~~~Sf~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~-----~~~~~~~~~~~~~e~Sak~~~~v~e~f~ 155 (170)
T d1i2ma_ 83 FDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAK-----SIVFHRKKNLQYYDISAKSNYNFEKPFL 155 (170)
T ss_dssp EETTSGGGGTTHHHHHHHHHHHH--CSCCEEEEEECCCCSCSCCTTT-----SHHHHSSCSSEEEEEBTTTTBTTTHHHH
T ss_pred cccccccccchhHHHHHHHhhcc--CCCceeeecchhhhhhhhhhhH-----HHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999998876543 5799999999999965533322 1123345667899999999999999999
Q ss_pred HHHHHHhcCC
Q 030120 172 WLSNTLKSGG 181 (182)
Q Consensus 172 ~i~~~~~~~~ 181 (182)
+|.+.+...+
T Consensus 156 ~l~~~l~~~~ 165 (170)
T d1i2ma_ 156 WLARKLIGDP 165 (170)
T ss_dssp HHHHHHHTCT
T ss_pred HHHHHHccCC
Confidence 9999887654
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=100.00 E-value=3.8e-33 Score=184.31 Aligned_cols=175 Identities=50% Similarity=0.891 Sum_probs=152.1
Q ss_pred hhHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhc
Q 030120 3 IMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYF 82 (182)
Q Consensus 3 ~~~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~ 82 (182)
-+|++++ ..+.++.+||+++|.+|||||||++++.++.+....++.+...........++.+||+++++.....+..++
T Consensus 2 ~~~~~~~-~~~~~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 80 (177)
T d1zj6a1 2 ILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYY 80 (177)
T ss_dssp HHHHHHH-HHHTTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHH
T ss_pred hhHHHHH-HHhCCCeEEEEEECCCCCCHHHHHHHHhcCCCCccccccceeEEEEeecceEEEEeccccccccccchhhhh
Confidence 4678888 677799999999999999999999999999988877777777888888999999999999999999999999
Q ss_pred CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCC
Q 030120 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
..++++++++|.++..++.....+.............|+++|+||+|+.......++...+........+++++++||++
T Consensus 81 ~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~t 160 (177)
T d1zj6a1 81 TNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALT 160 (177)
T ss_dssp TTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred ccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCCEEEEEeCCC
Confidence 99999999999999999988887777776666667899999999999987777778888887777777889999999999
Q ss_pred CCCHHHHHHHHHHHHh
Q 030120 163 GEGLFEGMDWLSNTLK 178 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~~ 178 (182)
|+|+++++++|.+.+.
T Consensus 161 g~Gi~e~~~~L~~~lk 176 (177)
T d1zj6a1 161 GEGLCQGLEWMMSRLK 176 (177)
T ss_dssp TBTHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHhC
Confidence 9999999999998763
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-34 Score=192.17 Aligned_cols=169 Identities=18% Similarity=0.179 Sum_probs=129.0
Q ss_pred hhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeE-EEE--CCEEEEEEECCCCCCCccchhhhcCCC
Q 030120 10 SSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET-VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNT 85 (182)
Q Consensus 10 ~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~-~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~ 85 (182)
.+.+....+||+++|++|+|||||+++++.+.+.+ ..||++..... +.. ....+.+||++|++.+...+..+++.+
T Consensus 2 ~~~~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a 81 (185)
T d2atxa1 2 AHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMT 81 (185)
T ss_dssp SSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTC
T ss_pred CCCCCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhccccc
Confidence 34456778999999999999999999999988877 66776533332 223 347788999999999999999999999
Q ss_pred CeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhC---------ccccc-CCceEE
Q 030120 86 EAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALE---------LHKIK-NRQWAI 155 (182)
Q Consensus 86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~---------~~~~~-~~~~~~ 155 (182)
|++++|||+++++|+.....|+....+.. ..+.|+++|+||+|+.+............ ...++ ...++|
T Consensus 82 ~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~ 160 (185)
T d2atxa1 82 DVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCY 160 (185)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCE
T ss_pred ceeeeccccchHHHHHHHHHHHHHHHHhc-CCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEE
Confidence 99999999999999998887877776654 36789999999999975321111111000 00111 123679
Q ss_pred EEecCCCCCCHHHHHHHHHHHHhc
Q 030120 156 FKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 156 ~~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
++|||++|.||+++|+.+++.+..
T Consensus 161 ~E~SAk~~~gv~e~F~~li~~il~ 184 (185)
T d2atxa1 161 VECSALTQKGLKTVFDEAIIAILT 184 (185)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEecCCCCcCHHHHHHHHHHHHcC
Confidence 999999999999999999987643
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.4e-35 Score=192.73 Aligned_cols=156 Identities=18% Similarity=0.317 Sum_probs=126.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEE--C--CEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY--N--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~--~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
.+||+++|++|+|||||+++|.++.+.. ..||.+........ . ...+.+|||+|++.+...+..+++.++++++|
T Consensus 2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 81 (164)
T d1z2aa1 2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV 81 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence 4799999999999999999999888776 67777755544433 3 46789999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
+|++++++++....|+..+.... .+.|+++|+||+|+.+.. ..++..... +..+++++++||++|.||+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~--~~~~iilVgnK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~Sak~g~~v~e~ 154 (164)
T d1z2aa1 82 FSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLA-----KRLKLRFYRTSVKEDLNVSEV 154 (164)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEECBTTTTBSSHHH
T ss_pred EeccchhhhhhcccccccccccC--CCceEEEeeccCCcccceeeeehhhHHHH-----HHcCCEEEEeccCCCcCHHHH
Confidence 99999999999999988876543 478999999999985432 233332222 234568999999999999999
Q ss_pred HHHHHHHHhc
Q 030120 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~i~~~~~~ 179 (182)
|+.|++.+.+
T Consensus 155 f~~l~~~~lq 164 (164)
T d1z2aa1 155 FKYLAEKHLQ 164 (164)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999988753
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=1e-34 Score=190.63 Aligned_cols=158 Identities=20% Similarity=0.341 Sum_probs=125.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee--EEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
+-+||+++|++|+|||||++++.++.+.. ..++.+.... .+.. ....+.+|||||++.+..++..+++.+|++|+
T Consensus 4 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~il 83 (169)
T d3raba_ 4 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 83 (169)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEE
T ss_pred eEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 45899999999999999999999888766 5555554433 3333 34678999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
|||+++++++.....|+...... .....|+++|+||+|+.+.. ..++..... +..++++++|||++|.|+++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~-----~~~~~~~~e~Sak~g~gv~e 157 (169)
T d3raba_ 84 MYDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQLA-----DHLGFEFFEASAKDNINVKQ 157 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH-CCSCCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSHHH
T ss_pred EEECccchhhhhhhhhhhhhhcc-cCCcceEEEEEeecccccccccchhhhHHHH-----HHcCCEEEEecCCCCcCHHH
Confidence 99999999999988888766443 34678999999999986532 233332222 23356899999999999999
Q ss_pred HHHHHHHHHhc
Q 030120 169 GMDWLSNTLKS 179 (182)
Q Consensus 169 l~~~i~~~~~~ 179 (182)
+|+.|++.+.+
T Consensus 158 ~f~~l~~~i~e 168 (169)
T d3raba_ 158 TFERLVDVICE 168 (169)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 99999998765
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-34 Score=189.30 Aligned_cols=155 Identities=20% Similarity=0.317 Sum_probs=127.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEE----CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|++|+|||||++++.++.+.. ..++.+........ ....+.+||++|++.+...+..++..++++++|+
T Consensus 1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~ 80 (164)
T d1yzqa1 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY 80 (164)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence 689999999999999999999988876 66776655554443 3478899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. ..++.... ++..++++++|||++|.||+++|
T Consensus 81 d~~~~~s~~~i~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~e~SAk~g~~v~e~f 154 (164)
T d1yzqa1 81 DITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGERK-----AKELNVMFIETSAKAGYNVKQLF 154 (164)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHHH-----HHHTTCEEEECCTTTCTTHHHHH
T ss_pred ccccccchhhhHhhHHHHHHhc-CCCceEEEEecccchhhhhhhhHHHHHHH-----HHHcCCEEEEecCCCCcCHHHHH
Confidence 9999999999999998876543 3679999999999986432 22222222 23345679999999999999999
Q ss_pred HHHHHHHh
Q 030120 171 DWLSNTLK 178 (182)
Q Consensus 171 ~~i~~~~~ 178 (182)
++|++.++
T Consensus 155 ~~i~~~l~ 162 (164)
T d1yzqa1 155 RRVAAALP 162 (164)
T ss_dssp HHHHHHSC
T ss_pred HHHHHhhC
Confidence 99999876
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.5e-35 Score=190.89 Aligned_cols=159 Identities=17% Similarity=0.213 Sum_probs=130.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
.+.+||+++|++|+|||||+++|.++.+.+ ..||.+..+ ..+..++ ..+.+||++|.+.+..++..+++.+|++++
T Consensus 2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il 81 (167)
T d1xtqa1 2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 81 (167)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence 467899999999999999999999888776 677777653 3344444 677889999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
|||+++++++.....|+..+.......+.|+++|+||+|+... ...++.... +...++++++|||++|.||++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~-----a~~~~~~~~e~Sak~~~~v~~ 156 (167)
T d1xtqa1 82 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKAL-----AESWNAAFLESSAKENQTAVD 156 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHH-----HHHHTCEEEECCTTCHHHHHH
T ss_pred hcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHH-----HHHcCCEEEEEecCCCCCHHH
Confidence 9999999999999999998877666678999999999998643 233333222 223456799999999999999
Q ss_pred HHHHHHHHHh
Q 030120 169 GMDWLSNTLK 178 (182)
Q Consensus 169 l~~~i~~~~~ 178 (182)
+|+.|++.+.
T Consensus 157 ~f~~li~~~~ 166 (167)
T d1xtqa1 157 VFRRIILEAE 166 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999988764
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=100.00 E-value=5.5e-33 Score=180.55 Aligned_cols=160 Identities=60% Similarity=1.106 Sum_probs=143.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCc
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDT 97 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 97 (182)
+||+++|++|||||||++++.++++....++..............+.+||++|.......+..++..++++++++|..+.
T Consensus 1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~ 80 (160)
T d1r8sa_ 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (160)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeEEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEecCh
Confidence 58999999999999999999998887766666666666777889999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHHHHH
Q 030120 98 DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 177 (182)
.++.....++.+..........|+++++||.|+.+.....++............++++++|||++|+|++++|++|.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l~~~l 160 (160)
T d1r8sa_ 81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160 (160)
T ss_dssp GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHHHHhcC
Confidence 99999999999998887778899999999999988777888887777666677789999999999999999999998864
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=100.00 E-value=5e-35 Score=191.82 Aligned_cols=158 Identities=16% Similarity=0.228 Sum_probs=126.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee-EEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
-+||+++|++|+|||||++++.++.+.. +.||.+..+. .+... ...+.+||++|++.+...+..+++++|++++|+
T Consensus 4 ~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~ 83 (168)
T d1u8za_ 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVF 83 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEE
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEEEe
Confidence 5799999999999999999999988776 6777765433 33343 467789999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
|.++..++.....|+.++.+....++.|+++|+||+|+.+. ...++..... +..++++++|||++|.||+++|
T Consensus 84 d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~Sak~g~gv~e~f 158 (168)
T d1u8za_ 84 SITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----DQWNVNYVETSAKTRANVDKVF 158 (168)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEECCTTTCTTHHHHH
T ss_pred eccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHH-----HHcCCeEEEEcCCCCcCHHHHH
Confidence 99999999999999999877666678999999999998543 2233332222 2345689999999999999999
Q ss_pred HHHHHHHhc
Q 030120 171 DWLSNTLKS 179 (182)
Q Consensus 171 ~~i~~~~~~ 179 (182)
+.|++.+..
T Consensus 159 ~~l~~~i~~ 167 (168)
T d1u8za_ 159 FDLMREIRA 167 (168)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHC
Confidence 999988754
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-34 Score=189.64 Aligned_cols=158 Identities=20% Similarity=0.270 Sum_probs=122.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEE----CCEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
..+||+++|++|+|||||++++.++.+.+ ..||.+........ ....+.+||++|++.+...+..+++++|++++
T Consensus 2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 81 (167)
T d1z08a1 2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL 81 (167)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence 46899999999999999999999998877 67777655544333 34788999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
|||+++++|++....|+..+.... ....|+++|+||+|+.+. ...++.... ++..++++++|||++|.||++
T Consensus 82 v~d~~~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~-----a~~~~~~~~e~Sak~~~~v~e 155 (167)
T d1z08a1 82 VYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESY-----AESVGAKHYHTSAKQNKGIEE 155 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHH-----HHHTTCEEEEEBTTTTBSHHH
T ss_pred EEeCCchhHHHhhhhhhhhccccc-ccccceeeeccccccccccccchHHHHHH-----HHHcCCeEEEEecCCCcCHHH
Confidence 999999999999999888764433 356899999999998643 233333322 233456899999999999999
Q ss_pred HHHHHHHHHhc
Q 030120 169 GMDWLSNTLKS 179 (182)
Q Consensus 169 l~~~i~~~~~~ 179 (182)
+|..|++.+.+
T Consensus 156 ~F~~l~~~i~~ 166 (167)
T d1z08a1 156 LFLDLCKRMIE 166 (167)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhh
Confidence 99999998865
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.8e-34 Score=189.10 Aligned_cols=157 Identities=22% Similarity=0.292 Sum_probs=127.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEE----CCEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
+.+||+++|++|||||||+++|.++.+.. +.+|.......... ....+.+||++|++.+...+..+++.++++++
T Consensus 3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 82 (167)
T d1z0ja1 3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII 82 (167)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEE
Confidence 57899999999999999999999998877 66666655544333 34567899999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
|||+++++++.....|+..+... ...+.|+++|+||+|+.+. ...++.... +...++++++|||++|.||++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~e~SAk~~~nV~e 156 (167)
T d1z0ja1 83 VYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDY-----ADSIHAIFVETSAKNAININE 156 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHH-----HHHTTCEEEECBTTTTBSHHH
T ss_pred EeeechhhhhhhHHHhhhhhhhc-cCCcceEEEecccchhccccchhHHHHHHH-----HHHcCCEEEEEecCCCCCHHH
Confidence 99999999999999888776543 3368999999999999643 223332222 233457899999999999999
Q ss_pred HHHHHHHHHh
Q 030120 169 GMDWLSNTLK 178 (182)
Q Consensus 169 l~~~i~~~~~ 178 (182)
+|..|.+.++
T Consensus 157 ~f~~l~~~i~ 166 (167)
T d1z0ja1 157 LFIEISRRIP 166 (167)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHhCC
Confidence 9999999875
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-33 Score=185.09 Aligned_cols=159 Identities=17% Similarity=0.211 Sum_probs=129.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeE-EEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET-VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~-~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+.+||+++|++|+|||||++++..+.+.. +.||.+..... +.. ....+.+||++|++.+...+..+++.+|++++|
T Consensus 2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv 81 (167)
T d1c1ya_ 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEEe
Confidence 46899999999999999999999999887 56666543322 222 457889999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
||++++.+++.+..|+..+.+....++.|+++|+||+|+.... ..++...... ...++++++|||++|.||+++
T Consensus 82 ~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~e~Sak~g~gv~e~ 157 (167)
T d1c1ya_ 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR----QWCNCAFLESSAKSKINVNEI 157 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH----HTTSCEEEECBTTTTBSHHHH
T ss_pred eeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHH----HhCCCEEEEEcCCCCcCHHHH
Confidence 9999999999999999988776555689999999999996432 2222222221 234578999999999999999
Q ss_pred HHHHHHHHh
Q 030120 170 MDWLSNTLK 178 (182)
Q Consensus 170 ~~~i~~~~~ 178 (182)
|++|++.+.
T Consensus 158 F~~l~~~i~ 166 (167)
T d1c1ya_ 158 FYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999998774
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.1e-35 Score=192.40 Aligned_cols=159 Identities=23% Similarity=0.309 Sum_probs=126.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc--eeeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF--NVETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
..+||+++|++|+|||||++++.++.+.. ..++.+. ....+.+.+ .++.+|||||++.+...+..++++++++++
T Consensus 4 ~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~ 83 (171)
T d2ew1a1 4 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALIL 83 (171)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEE
Confidence 35899999999999999999999988776 5555544 344455544 567899999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
|+|++++.++.....|+..+.... ....|+++|+||+|+.+.. ..++..... ...++++++|||++|+||++
T Consensus 84 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~-----~~~~~~~~~~SAktg~gV~e 157 (171)
T d2ew1a1 84 TYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFS-----EAQDMYYLETSAKESDNVEK 157 (171)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCCEEECCTTTCTTHHH
T ss_pred eeecccchhhhhhhhhhhhhcccc-cccccEEEEEeecccccccchhhhHHHHHH-----HhCCCEEEEEccCCCCCHHH
Confidence 999999999999999988876543 3578999999999986432 233322221 22345799999999999999
Q ss_pred HHHHHHHHHhcC
Q 030120 169 GMDWLSNTLKSG 180 (182)
Q Consensus 169 l~~~i~~~~~~~ 180 (182)
+|..|++.+...
T Consensus 158 ~f~~l~~~l~~~ 169 (171)
T d2ew1a1 158 LFLDLACRLISE 169 (171)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999988776543
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.8e-33 Score=185.94 Aligned_cols=161 Identities=14% Similarity=0.258 Sum_probs=124.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee-EEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE-TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+.||+++|++|+|||||++++.++.+.+ ..||.+.... .... ....+.+||++|++.+...+..+++++|++++||
T Consensus 2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 81 (177)
T d1kmqa_ 2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF 81 (177)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhc
Confidence 4689999999999999999999998877 6666653332 2333 4467899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCc---------ccc-cCCceEEEEecCCC
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALEL---------HKI-KNRQWAIFKTCAIK 162 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~---------~~~-~~~~~~~~~~Sa~~ 162 (182)
|+++++|+.....|+........ ++.|+++|+||+|+.+.....+....... ..+ .....++++|||++
T Consensus 82 d~~~~~Sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt 160 (177)
T d1kmqa_ 82 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT 160 (177)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred ccchhHHHHHHHHHHHHHHHHhC-CCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence 99999999998888877766543 67999999999999654221111111110 111 12235899999999
Q ss_pred CCCHHHHHHHHHHHHh
Q 030120 163 GEGLFEGMDWLSNTLK 178 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~~ 178 (182)
|.||+++|+.+.+.+.
T Consensus 161 ~~gi~e~F~~i~~~~l 176 (177)
T d1kmqa_ 161 KDGVREVFEMATRAAL 176 (177)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHh
Confidence 9999999999998764
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.3e-34 Score=188.82 Aligned_cols=159 Identities=16% Similarity=0.177 Sum_probs=129.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
..+||+++|++|+|||||++++.++.+.+ ..||.+..+ ..+.. ....+.+||++|++.+...+..+++.+|++++|
T Consensus 3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv 82 (169)
T d1x1ra1 3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV 82 (169)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEEe
Confidence 46899999999999999999999988776 666665433 22334 447788999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCC-CHHH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGE-GLFE 168 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~ 168 (182)
||++++.++..+..|+..+.+.....+.|+++|+||+|+.+.. ..++..+.. ...+++++++||+++. ||++
T Consensus 83 ~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~-----~~~~~~~~e~Sak~~~~nV~~ 157 (169)
T d1x1ra1 83 YSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMA-----TKYNIPYIETSAKDPPLNVDK 157 (169)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHH-----HHHTCCEEEEBCSSSCBSHHH
T ss_pred cccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHH-----HHcCCEEEEEcCCCCCcCHHH
Confidence 9999999999999999988776555689999999999996542 233332222 2334579999999886 9999
Q ss_pred HHHHHHHHHhc
Q 030120 169 GMDWLSNTLKS 179 (182)
Q Consensus 169 l~~~i~~~~~~ 179 (182)
+|+.|++.+.+
T Consensus 158 ~F~~l~~~i~~ 168 (169)
T d1x1ra1 158 TFHDLVRVIRQ 168 (169)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998764
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.6e-34 Score=188.98 Aligned_cols=160 Identities=15% Similarity=0.211 Sum_probs=126.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccc-eeeEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGF-NVETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
++.+||+++|++|||||||++++.++.+.. ..||.+. ....+... ...+.+||++|++.+...+..+++.+|++++
T Consensus 3 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 82 (171)
T d2erya1 3 QEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLL 82 (171)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEEE
Confidence 456899999999999999999999988776 5666553 33334443 3678999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
|+|.++++++..+..|+..+.+.......|+++|+||+|+.+. ...++.... ++..++++++|||++|.||++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~e~Sak~~~~i~e 157 (171)
T d2erya1 83 VFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL-----ARQLKVTYMEASAKIRMNVDQ 157 (171)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHH-----HHHTTCEEEECBTTTTBSHHH
T ss_pred eeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHH-----HHHcCCEEEEEcCCCCcCHHH
Confidence 9999999999999999988877666668999999999998654 233333322 233456899999999999999
Q ss_pred HHHHHHHHHhc
Q 030120 169 GMDWLSNTLKS 179 (182)
Q Consensus 169 l~~~i~~~~~~ 179 (182)
+|..|++.+.+
T Consensus 158 ~f~~l~~~i~k 168 (171)
T d2erya1 158 AFHELVRVIRK 168 (171)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.9e-35 Score=191.40 Aligned_cols=158 Identities=16% Similarity=0.221 Sum_probs=127.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+.+||+++|++|+|||||+++++++.+.. ..++.+... ...... ...+.+||++|++.+...+..+++.+|++++|
T Consensus 2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv 81 (167)
T d1kaoa_ 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeee
Confidence 47899999999999999999999998877 556655332 233333 46788899999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
+|++++.++.....|+..+......++.|+++|+||+|+.+.. ...+.... ++..++++++|||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~e~Sak~g~~i~e~ 156 (167)
T d1kaoa_ 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL-----AEEWGCPFMETSAKSKTMVDEL 156 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHH-----HHHHTSCEEEECTTCHHHHHHH
T ss_pred eeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHH-----HHHcCCeEEEECCCCCcCHHHH
Confidence 9999999999999999888766555789999999999985432 22222111 1223457999999999999999
Q ss_pred HHHHHHHHh
Q 030120 170 MDWLSNTLK 178 (182)
Q Consensus 170 ~~~i~~~~~ 178 (182)
|+.|++.+.
T Consensus 157 f~~i~~~i~ 165 (167)
T d1kaoa_ 157 FAEIVRQMN 165 (167)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 999998764
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.8e-35 Score=191.53 Aligned_cols=159 Identities=19% Similarity=0.264 Sum_probs=126.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeE-EEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET-VQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~-~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
+.+||+++|++|+|||||+++++++.+.+ +.||.+..... ...++ ..+.+||++|++.+...+..+++.+|++++|
T Consensus 1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv 80 (171)
T d2erxa1 1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 80 (171)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence 46899999999999999999999998876 67777754433 33343 5778899999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhcc-ccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEE-ELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
||+++++++.....|+..+.... ...+.|+++|+||+|+.+. ...++.... ++..++++++|||++|.||++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~-----~~~~~~~~~e~Sak~~~~v~e 155 (171)
T d2erxa1 81 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEAL-----ARTWKCAFMETSAKLNHNVKE 155 (171)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHH-----HHHHTCEEEECBTTTTBSHHH
T ss_pred eecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHH-----HHHcCCeEEEEcCCCCcCHHH
Confidence 99999999999999988776533 2357899999999998543 223333222 233456899999999999999
Q ss_pred HHHHHHHHHhc
Q 030120 169 GMDWLSNTLKS 179 (182)
Q Consensus 169 l~~~i~~~~~~ 179 (182)
+|+.|++.+..
T Consensus 156 ~f~~l~~~~~~ 166 (171)
T d2erxa1 156 LFQELLNLEKR 166 (171)
T ss_dssp HHHHHHHTCCS
T ss_pred HHHHHHHHHHH
Confidence 99999986543
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.9e-34 Score=185.82 Aligned_cols=159 Identities=16% Similarity=0.215 Sum_probs=129.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEE-EE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETV-QY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~-~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.+||+++|++|||||||+++|.++.+.. ..++.+...... .. ....+.+||++|++.+...+..+++.++++++|+
T Consensus 3 e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv~ 82 (166)
T d1ctqa_ 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 82 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhcccccceee
Confidence 5899999999999999999999998877 566666443332 22 3467889999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC-HHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 171 (182)
|.+++.+++....|+..+.......+.|+++|+||+|+.+... .++..... +..++++++|||++|.||+++|+
T Consensus 83 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~e~Sak~g~gi~e~f~ 157 (166)
T d1ctqa_ 83 AINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA-----RSYGIPYIETSAKTRQGVEDAFY 157 (166)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHH-----HHHTCCEEECCTTTCTTHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHH-----HHhCCeEEEEcCCCCcCHHHHHH
Confidence 9999999999999999887766556799999999999965433 33322222 22345799999999999999999
Q ss_pred HHHHHHhcC
Q 030120 172 WLSNTLKSG 180 (182)
Q Consensus 172 ~i~~~~~~~ 180 (182)
.|++.+.++
T Consensus 158 ~i~~~i~~~ 166 (166)
T d1ctqa_ 158 TLVREIRQH 166 (166)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhC
Confidence 999988753
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.4e-34 Score=188.24 Aligned_cols=159 Identities=21% Similarity=0.311 Sum_probs=128.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEE----CCEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
..+||+++|++|+|||||+++|.++.+.. ..+|.+........ ....+.+||++|++.+...+..+++.++++++
T Consensus 5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 84 (170)
T d1r2qa_ 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV 84 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence 35799999999999999999999988877 66666655544333 34678899999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
|+|.++.+++.....|+..+.+. ..++.|+++|+||+|+.+.. ..++.. .. +...++++++|||++|.||++
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~e~~~-~~----~~~~~~~~~e~SAk~g~~V~e 158 (170)
T d1r2qa_ 85 VYDITNEESFARAKNWVKELQRQ-ASPNIVIALSGNKADLANKRAVDFQEAQ-SY----ADDNSLLFMETSAKTSMNVNE 158 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHH-HH----HHHTTCEEEECCTTTCTTHHH
T ss_pred EeccchhhHHHHHHHHhhhhhhc-cCCCceEEeecccccccccccccHHHHH-HH----HHhcCCEEEEeeCCCCCCHHH
Confidence 99999999999999888887553 33679999999999985432 222222 22 233457899999999999999
Q ss_pred HHHHHHHHHhcC
Q 030120 169 GMDWLSNTLKSG 180 (182)
Q Consensus 169 l~~~i~~~~~~~ 180 (182)
+|+.|++.+.++
T Consensus 159 ~f~~l~~~i~~n 170 (170)
T d1r2qa_ 159 IFMAIAKKLPKN 170 (170)
T ss_dssp HHHHHHHTSCCC
T ss_pred HHHHHHHHHhhC
Confidence 999999887653
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.6e-34 Score=187.45 Aligned_cols=156 Identities=17% Similarity=0.278 Sum_probs=124.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
..+||+++|++|+|||||++++.++.+.. ..++..... .....++ ..+.+||+||++.+...+..+++.+|++++
T Consensus 3 y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~il 82 (166)
T d1z0fa1 3 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 82 (166)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEE
Confidence 45899999999999999999999988777 444444433 3444443 588999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
|+|+++.+++.....|+..+... .....|+++++||+|+.+.. ..++..... +..++++++|||++|.||++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Saktg~~v~e 156 (166)
T d1z0fa1 83 VYDITRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAKQFA-----EENGLLFLEASAKTGENVED 156 (166)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHHH
T ss_pred EeccCchHHHHHHHHHHHHHHhh-ccccceEEEEcccccchhhcccHHHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999888777543 44678999999999985432 222222222 23456899999999999999
Q ss_pred HHHHHHHHH
Q 030120 169 GMDWLSNTL 177 (182)
Q Consensus 169 l~~~i~~~~ 177 (182)
+|+.|++.+
T Consensus 157 ~f~~i~~~i 165 (166)
T d1z0fa1 157 AFLEAAKKI 165 (166)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999875
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.3e-34 Score=189.05 Aligned_cols=161 Identities=22% Similarity=0.365 Sum_probs=127.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
.+||+++|++|+|||||++++.++.+.. ..+|.+.+. ..+... ...+.+||++|++.+...+..++..+|++++|
T Consensus 3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv 82 (170)
T d1ek0a_ 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV 82 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence 5799999999999999999999998877 667776544 344443 46889999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 171 (182)
||.+++.++.....|+....... ....|+++++||+|+.+......+........++..+++++++||++|.||+++|.
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~ 161 (170)
T d1ek0a_ 83 YDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EeCCcccchhhhhhhhhhhcccc-ccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence 99999999999998887765543 35789999999999854322222211111222234467899999999999999999
Q ss_pred HHHHHHh
Q 030120 172 WLSNTLK 178 (182)
Q Consensus 172 ~i~~~~~ 178 (182)
.|.+.++
T Consensus 162 ~i~~~i~ 168 (170)
T d1ek0a_ 162 GIGEKIP 168 (170)
T ss_dssp HHHTTSC
T ss_pred HHHHHhc
Confidence 9988765
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.5e-33 Score=186.18 Aligned_cols=166 Identities=16% Similarity=0.203 Sum_probs=127.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee-eEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV-ETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
++.+||+++|++|+|||||+++|.++.+.. +.+|.+... ..+.. ....+.+||++|++.+...+..+++.+|++++
T Consensus 3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 82 (183)
T d1mh1a_ 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (183)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceeee
Confidence 678999999999999999999999998777 667766333 23333 44677899999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHH-HHHHHhCc--------cc-ccCCceEEEEecC
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDA-AVSEALEL--------HK-IKNRQWAIFKTCA 160 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~-~~~~~~~~--------~~-~~~~~~~~~~~Sa 160 (182)
|||+++.++++....|+....+.. ..+.|+++|+||+|+.+..... ........ .. .....++|++|||
T Consensus 83 v~d~~~~~sf~~i~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SA 161 (183)
T d1mh1a_ 83 CFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161 (183)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH-STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred eeccchHHHHHHHHHHHHHHHHHh-CCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCC
Confidence 999999999999887776666543 3578999999999985431111 11110000 00 0123478999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCC
Q 030120 161 IKGEGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 161 ~~~~~v~~l~~~i~~~~~~~~ 181 (182)
++|.||+++|+.+++.+..++
T Consensus 162 k~~~~V~e~F~~l~~~il~pp 182 (183)
T d1mh1a_ 162 LTQRGLKTVFDEAIRAVLCPP 182 (183)
T ss_dssp TTCTTHHHHHHHHHHHHSCCC
T ss_pred CCCcCHHHHHHHHHHHHcCCC
Confidence 999999999999998876554
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.7e-33 Score=188.50 Aligned_cols=159 Identities=22% Similarity=0.357 Sum_probs=127.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee--EEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
.-+||+|+|++|+|||||++++.++.+.. ..+|.+.... .+.+ ....+.+|||||++.+..++..+++++|++|+
T Consensus 5 ~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~ 84 (194)
T d2bcgy1 5 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIII 84 (194)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 45899999999999999999999988776 6677665443 3444 34678899999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--HHHHHHHhCcccccCCceEEEEecCCCCCCHHH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFE 168 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 168 (182)
|+|+++++++.....++..+.+. .....|+++|+||+|+.+... .++..... ...+++++++||++|.|+++
T Consensus 85 v~d~t~~~s~~~~~~~~~~~~~~-~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~e~SAk~g~gi~e 158 (194)
T d2bcgy1 85 VYDVTDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFA-----DANKMPFLETSALDSTNVED 158 (194)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCCEEECCTTTCTTHHH
T ss_pred EEeCcchhhhhhHhhhhhhhhhc-ccCCceEEEEEeccccccccchhHHHHhhhh-----hccCcceEEEecCcCccHHH
Confidence 99999999999998888877543 336789999999999975432 22222221 23446799999999999999
Q ss_pred HHHHHHHHHhcC
Q 030120 169 GMDWLSNTLKSG 180 (182)
Q Consensus 169 l~~~i~~~~~~~ 180 (182)
+|+.+++.+.+.
T Consensus 159 ~f~~l~~~i~~~ 170 (194)
T d2bcgy1 159 AFLTMARQIKES 170 (194)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887653
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.9e-34 Score=186.68 Aligned_cols=159 Identities=19% Similarity=0.290 Sum_probs=126.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEE----CCEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
..+||+++|++|+|||||++++.++.+.. ..++.........+ ....+.+|||||++.+...+..+++.++++++
T Consensus 4 ~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (174)
T d2bmea1 4 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALL 83 (174)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEE
Confidence 45899999999999999999999888776 55666655443332 44678999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH-HHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-AAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
|+|.++++++.....|+..+.... ..+.|+++|+||+|+...... .+....+ +...+++++++||++|.|++++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~----~~~~~~~~~e~Sak~~~gi~e~ 158 (174)
T d2bmea1 84 VYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRF----AQENELMFLETSALTGENVEEA 158 (174)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHH----HHHTTCEEEECCTTTCTTHHHH
T ss_pred EEecccchhHHHHhhhhccccccc-CCceEEEEEEecccccchhchhhhHHHHH----HHhCCCEEEEeeCCCCcCHHHH
Confidence 999999999999998888876543 367999999999998543221 1211121 1234578999999999999999
Q ss_pred HHHHHHHHhc
Q 030120 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~i~~~~~~ 179 (182)
|+++.+.+.+
T Consensus 159 f~~l~~~i~~ 168 (174)
T d2bmea1 159 FVQCARKILN 168 (174)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887653
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-32 Score=181.49 Aligned_cols=161 Identities=19% Similarity=0.297 Sum_probs=130.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
..+||+++|++|+|||||++++.++.+.. ..++.+.. ...+.+. ...+.+|||||++.+..++..+++.+|++++
T Consensus 6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~ 85 (177)
T d1x3sa1 6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL 85 (177)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 36899999999999999999999988776 44444433 3344453 4678999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC-HHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
|||++++.++.....|+..+.........|+++++||.|...... ..+..+.. +..+++++++||++|.|++++
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~tg~gv~e~ 160 (177)
T d1x3sa1 86 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFA-----RKHSMLFIEASAKTCDGVQCA 160 (177)
T ss_dssp EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHHHH
T ss_pred EEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHHHH-----HHCCCEEEEEeCCCCCCHHHH
Confidence 999999999999999999887766666799999999999865432 23333222 234568999999999999999
Q ss_pred HHHHHHHHhcCC
Q 030120 170 MDWLSNTLKSGG 181 (182)
Q Consensus 170 ~~~i~~~~~~~~ 181 (182)
|+++++.+.+.+
T Consensus 161 f~~l~~~l~~~p 172 (177)
T d1x3sa1 161 FEELVEKIIQTP 172 (177)
T ss_dssp HHHHHHHHHTSG
T ss_pred HHHHHHHHccCc
Confidence 999999887764
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.4e-34 Score=187.33 Aligned_cols=158 Identities=16% Similarity=0.214 Sum_probs=123.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEE-EC--CEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQ-YN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~-~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.+||+++|++|+|||||+++++++.+.. +.||.+..+.... .. ...+.+||++|++.+. ....+++.++++++||
T Consensus 2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~ 80 (168)
T d2atva1 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVY 80 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccccceeec
Confidence 5899999999999999999999999877 7788776544332 33 3688999999998764 4566788999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCC-CHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGE-GLFEG 169 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~l 169 (182)
|+++++++.....|+..........+.|+++|+||+|+.+. ...++..... +..++++++|||++|. ||+++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a-----~~~~~~~~e~Saktg~gnV~e~ 155 (168)
T d2atva1 81 DITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLA-----TELACAFYECSACTGEGNITEI 155 (168)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTSEEEECCTTTCTTCHHHH
T ss_pred ccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHH-----HHhCCeEEEEccccCCcCHHHH
Confidence 99999999999887765544444467999999999998643 2333332222 2335679999999998 59999
Q ss_pred HHHHHHHHhcC
Q 030120 170 MDWLSNTLKSG 180 (182)
Q Consensus 170 ~~~i~~~~~~~ 180 (182)
|..|++.+.+.
T Consensus 156 F~~l~~~i~~~ 166 (168)
T d2atva1 156 FYELCREVRRR 166 (168)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999887654
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.3e-33 Score=185.04 Aligned_cols=158 Identities=19% Similarity=0.312 Sum_probs=124.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
.-+||+++|++|+|||||++++.++.+.. ..++.+.. ...+..++ ..+.+||++|++.+...+..+++.++++++
T Consensus 3 ~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~ 82 (175)
T d2f9la1 3 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 82 (175)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEE
Confidence 45899999999999999999999988776 44545433 34444444 578899999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC-HHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD-DAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
|||.++++++.....|+..+.... ..+.|+++|+||+|+.+... ..+..... ....+.++++|||++|.|++++
T Consensus 83 v~d~~~~~S~~~~~~~~~~i~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~----~~~~~~~~~e~Sa~~g~~i~e~ 157 (175)
T d2f9la1 83 VYDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTDEARAF----AEKNNLSFIETSALDSTNVEEA 157 (175)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHH----HHHTTCEEEECCTTTCTTHHHH
T ss_pred EEECCCcccchhHHHHHHHHHHhc-CCCCcEEEEEeeecccccccchHHHHHHh----hcccCceEEEEecCCCcCHHHH
Confidence 999999999999999988875543 36789999999999964322 11211111 1234568999999999999999
Q ss_pred HHHHHHHHh
Q 030120 170 MDWLSNTLK 178 (182)
Q Consensus 170 ~~~i~~~~~ 178 (182)
|+.+.+.+.
T Consensus 158 f~~l~~~i~ 166 (175)
T d2f9la1 158 FKNILTEIY 166 (175)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888754
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.7e-33 Score=185.35 Aligned_cols=156 Identities=19% Similarity=0.284 Sum_probs=122.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee--EEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
-+||+++|++|||||||++++.++.+.. ..++...... .... ....+.+||++|++.+...+..+++.+|++++|
T Consensus 3 ~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv 82 (173)
T d2a5ja1 3 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 82 (173)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEE
Confidence 4799999999999999999999988776 4444443332 2333 346889999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
+|++++.++.....|+..+... ...+.|+++|+||+|+... ...++..... ...+++++++||++|.||+++
T Consensus 83 ~d~~~~~sf~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~a-----~~~~~~~~e~Sa~tg~~V~e~ 156 (173)
T d2a5ja1 83 YDITRRETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGEAFA-----REHGLIFMETSAKTACNVEEA 156 (173)
T ss_dssp EETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEEECTTTCTTHHHH
T ss_pred EeecChHHHHhHHHHHHHHHHh-CCCCCeEEEEecCCchhhhhhhHHHHHHHHH-----HHcCCEEEEecCCCCCCHHHH
Confidence 9999999999999999887654 3367899999999998543 2222222221 234568999999999999999
Q ss_pred HHHHHHHHh
Q 030120 170 MDWLSNTLK 178 (182)
Q Consensus 170 ~~~i~~~~~ 178 (182)
|..|++.+.
T Consensus 157 f~~i~~~i~ 165 (173)
T d2a5ja1 157 FINTAKEIY 165 (173)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998765
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-32 Score=183.42 Aligned_cols=163 Identities=15% Similarity=0.164 Sum_probs=125.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeE-EEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET-VQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~-~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
.+||+++|++|+|||||++++..+.+.. +.||.+..... ... ....+.+||++|++.+...+..+++.+|++++||
T Consensus 3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 82 (191)
T d2ngra_ 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 82 (191)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeeccc
Confidence 5899999999999999999999999877 66777644333 223 3467899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHH---------HhCcccc-cCCceEEEEecCCC
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSE---------ALELHKI-KNRQWAIFKTCAIK 162 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~---------~~~~~~~-~~~~~~~~~~Sa~~ 162 (182)
|+++++||+.+..|+....... ..+.|+++|+||+|+.+.....+... ......+ ...++++++|||++
T Consensus 83 d~~~~~Sf~~~~~~~~~~~~~~-~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 161 (191)
T d2ngra_ 83 SVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALT 161 (191)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHH-CTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTTT
T ss_pred ccchHHHHHHHHHHHHHHHhhc-CCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCCC
Confidence 9999999999988777766543 36799999999999864311111000 0000111 22446799999999
Q ss_pred CCCHHHHHHHHHHHHhcC
Q 030120 163 GEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~~~~ 180 (182)
|.||+++|+.++..+.+.
T Consensus 162 ~~~V~e~f~~l~~~~~~~ 179 (191)
T d2ngra_ 162 QKGLKNVFDEAILAALEP 179 (191)
T ss_dssp CTTHHHHHHHHHHHHTSC
T ss_pred CcCHHHHHHHHHHHHhcC
Confidence 999999999999876643
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.1e-33 Score=183.65 Aligned_cols=158 Identities=20% Similarity=0.363 Sum_probs=118.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc--ccccccceeeE--EEECC--EEEEEEECCCCCCCccchhhhcCCCCeE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIGFNVET--VQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAV 88 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~i 88 (182)
+..+||+++|++|+|||||++++.++.+.. ..++.+.+... +...+ ..+.+|||||++.+...+..+++++|++
T Consensus 4 d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~ 83 (170)
T d2g6ba1 4 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL 83 (170)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred ceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCcee
Confidence 356899999999999999999999988755 34455555444 33444 5778999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030120 89 IYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL--DDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
++|+|.+++.++.....|+........ ...|+++|+||+|+.+.. ..++..... +..+++++++||++|.||
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~~k~d~~~~~~v~~~~~~~~~-----~~~~~~~~e~Sak~g~gi 157 (170)
T d2g6ba1 84 LLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLA-----KEYGLPFMETSAKTGLNV 157 (170)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHH-----HHHTCCEEECCTTTCTTH
T ss_pred EEEecCCcccchhhhhhhhhhhhhccC-CCceEEEEEeeechhhcccccHHHHHHHH-----HHcCCEEEEEeCCCCcCH
Confidence 999999999999999988887765543 578999999999986542 233333222 223467999999999999
Q ss_pred HHHHHHHHHHHh
Q 030120 167 FEGMDWLSNTLK 178 (182)
Q Consensus 167 ~~l~~~i~~~~~ 178 (182)
+++|++|++.+.
T Consensus 158 ~e~f~~l~~~i~ 169 (170)
T d2g6ba1 158 DLAFTAIAKELK 169 (170)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC
Confidence 999999998875
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.4e-32 Score=180.12 Aligned_cols=160 Identities=18% Similarity=0.254 Sum_probs=113.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEE-----CCEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY-----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~-----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
-+||+++|++|+|||||++++.++.+.. ..++.+........ ....+.+|||+|++.+...+..+++.++++++
T Consensus 2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 81 (175)
T d1ky3a_ 2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL 81 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence 4799999999999999999999988776 55655544333332 34678999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhcc---ccCCCeEEEEEeCCCCCCC---CCHHHHHHHhCcccccCCceEEEEecCCCCC
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEE---ELKGAVALIFANKQDLPGA---LDDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~iivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
|+|++++.++.....|+.++.... ...+.|+++|+||+|+.+. ....+.. .+.. ....+++++|||++|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~-~~~~---~~~~~~~~e~SA~~g~ 157 (175)
T d1ky3a_ 82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQ-ELAK---SLGDIPLFLTSAKNAI 157 (175)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHH-HHHH---HTTSCCEEEEBTTTTB
T ss_pred EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHH-HHHH---HcCCCeEEEEeCCCCc
Confidence 999999999999999888775432 2246899999999998643 1222222 2211 2234669999999999
Q ss_pred CHHHHHHHHHHHHhcC
Q 030120 165 GLFEGMDWLSNTLKSG 180 (182)
Q Consensus 165 ~v~~l~~~i~~~~~~~ 180 (182)
||+++|++|.+.+.+.
T Consensus 158 gv~e~f~~l~~~~l~~ 173 (175)
T d1ky3a_ 158 NVDTAFEEIARSALQQ 173 (175)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999876543
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.7e-34 Score=188.87 Aligned_cols=159 Identities=21% Similarity=0.387 Sum_probs=126.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEE------------CCEEEEEEECCCCCCCccchhh
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQY------------NNIKFQVWDLGGQTSIRPYWRC 80 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~------------~~~~~~~~D~~g~~~~~~~~~~ 80 (182)
..+||+++|++|+|||||+++|.++.+.. ..++.+... ..+.+ ....+.+|||+|++.+..++..
T Consensus 4 ~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~ 83 (186)
T d2f7sa1 4 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTA 83 (186)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHH
T ss_pred EEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHH
Confidence 35899999999999999999999988776 455444332 22222 1357899999999999999999
Q ss_pred hcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEe
Q 030120 81 YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
+++++|++++|||++++.++..+..|+..+.........|+++|+||+|+.+. ...++..... +..+++++++
T Consensus 84 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~-----~~~~~~~~e~ 158 (186)
T d2f7sa1 84 FFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELA-----DKYGIPYFET 158 (186)
T ss_dssp HHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCCEEEE
T ss_pred HHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHH-----HHcCCEEEEE
Confidence 99999999999999999999999999888766666667899999999999543 2233332222 2345679999
Q ss_pred cCCCCCCHHHHHHHHHHHHhc
Q 030120 159 CAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 159 Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
||++|+||+++|+.|.+.+.+
T Consensus 159 Sak~~~~i~e~f~~l~~~i~~ 179 (186)
T d2f7sa1 159 SAATGQNVEKAVETLLDLIMK 179 (186)
T ss_dssp BTTTTBTHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999987653
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.6e-33 Score=184.50 Aligned_cols=159 Identities=21% Similarity=0.348 Sum_probs=98.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce--eeEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEE
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN--VETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVI 89 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii 89 (182)
++-+||+++|.+|+|||||+++|.++.+.. ..+|.+.. ...+..++ ..+.+|||||++.+...+..+++.+|++|
T Consensus 4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i 83 (173)
T d2fu5c1 4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 83 (173)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred cEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEE
Confidence 345799999999999999999999888766 55565543 34455544 57788999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--HHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|||++++.++.....|+..+.. ....+.|+++|+||.|+..... ..+.... ....++++++|||++|+||+
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~g~gv~ 157 (173)
T d2fu5c1 84 LVYDITNEKSFDNIRNWIRNIEE-HASADVEKMILGNKCDVNDKRQVSKERGEKL-----ALDYGIKFMETSAKANINVE 157 (173)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHH-HSCTTCEEEEEEEC--CCSCCCSCHHHHHHH-----HHHHTCEEEECCC---CCHH
T ss_pred EEEECCChhhHHHHHHHHHHhhh-hccCCceEEEEEecccchhhcccHHHHHHHH-----HHhcCCEEEEEeCCCCCCHH
Confidence 99999999999999988877743 3446799999999999965432 2222222 12345689999999999999
Q ss_pred HHHHHHHHHHhc
Q 030120 168 EGMDWLSNTLKS 179 (182)
Q Consensus 168 ~l~~~i~~~~~~ 179 (182)
++|++|++.+.+
T Consensus 158 e~f~~l~~~i~~ 169 (173)
T d2fu5c1 158 NAFFTLARDIKA 169 (173)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.4e-32 Score=178.70 Aligned_cols=158 Identities=27% Similarity=0.394 Sum_probs=122.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceee--EEEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVE--TVQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYV 91 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 91 (182)
-+||+++|++|+|||||+++++++.+.. ..+|.+.... .+... ...+.+|||||++.+...+..++++++++++|
T Consensus 2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T d1g16a_ 2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence 4799999999999999999999988777 6677665444 34443 46777899999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHH
Q 030120 92 VDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 171 (182)
||.+++.++.....|+...... .....|++++++|.|+.+.....+....+. ...++++++|||++|+|++++|+
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~e~f~ 156 (166)
T d1g16a_ 82 YDITDERTFTNIKQWFKTVNEH-ANDEAQLLLVGNKSDMETRVVTADQGEALA----KELGIPFIESSAKNDDNVNEIFF 156 (166)
T ss_dssp EETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCTTCCSCHHHHHHHH----HHHTCCEEECBTTTTBSHHHHHH
T ss_pred EECCCccCHHHHHhhhhhhhcc-ccCcceeeeecchhhhhhhhhhHHHHHHHH----HhcCCeEEEECCCCCCCHHHHHH
Confidence 9999999998888777766554 335789999999999976544333333332 23356799999999999999999
Q ss_pred HHHHHHhc
Q 030120 172 WLSNTLKS 179 (182)
Q Consensus 172 ~i~~~~~~ 179 (182)
.|.+.+.+
T Consensus 157 ~l~~~i~~ 164 (166)
T d1g16a_ 157 TLAKLIQE 164 (166)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988765
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=100.00 E-value=2.6e-30 Score=169.10 Aligned_cols=166 Identities=66% Similarity=1.090 Sum_probs=148.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 94 (182)
.+.+||+++|++|||||||++++.++.+....++.+............+.+||.+|.+.............+++++++|+
T Consensus 3 ~ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (169)
T d1upta_ 3 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDS 82 (169)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEET
T ss_pred CcceEEEEECCCCCCHHHHHHHHhCCCCcceecccceeeeeeccCceEEEEeeccccccccccchhhhhhhhhhhhhhhh
Confidence 35789999999999999999999999988877888888888888999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHHHHHHH
Q 030120 95 SDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLS 174 (182)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 174 (182)
.+..+......++............|+++++||.|+.......++...+.........++++++||++|+||+++|++|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~~l~ 162 (169)
T d1upta_ 83 CDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLV 162 (169)
T ss_dssp TCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred hhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99988888888777777766667899999999999988777778888777666677889999999999999999999999
Q ss_pred HHHhcC
Q 030120 175 NTLKSG 180 (182)
Q Consensus 175 ~~~~~~ 180 (182)
+.+.+.
T Consensus 163 ~~l~~k 168 (169)
T d1upta_ 163 ETLKSR 168 (169)
T ss_dssp HHHHTC
T ss_pred HHHHhC
Confidence 988654
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=8.3e-32 Score=178.91 Aligned_cols=159 Identities=16% Similarity=0.262 Sum_probs=127.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEE----CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQY----NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+||+++|.+|||||||++++.++.+.. +.||.+.+...... ....+.+||++|+......+..++..+|++++|+
T Consensus 3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~ 82 (184)
T d1vg8a_ 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF 82 (184)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEee
Confidence 689999999999999999999988777 66777766555444 4478899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhcc---ccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCCHHHH
Q 030120 93 DSSDTDRIQTAKEEFHAILEEE---ELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEG 169 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~---~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 169 (182)
|.++..++.....|+..+.... ...+.|+++|+||+|+.+.....+...... .....+++++|||++|.||+++
T Consensus 83 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~---~~~~~~~~~e~Sak~~~gI~e~ 159 (184)
T d1vg8a_ 83 DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWC---YSKNNIPYFETSAKEAINVEQA 159 (184)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHH---HHTTSCCEEECBTTTTBSHHHH
T ss_pred cccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHH---HHhcCCeEEEEcCCCCcCHHHH
Confidence 9999999999988887775532 234689999999999866433322222221 1234567999999999999999
Q ss_pred HHHHHHHHhc
Q 030120 170 MDWLSNTLKS 179 (182)
Q Consensus 170 ~~~i~~~~~~ 179 (182)
|+++++.+.+
T Consensus 160 f~~l~~~i~~ 169 (184)
T d1vg8a_ 160 FQTIARNALK 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999887654
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=5.6e-31 Score=173.40 Aligned_cols=160 Identities=16% Similarity=0.281 Sum_probs=124.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeE--EEEC--CEEEEEEECCCCCCCccchhhhcCCCCeEEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVET--VQYN--NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIY 90 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 90 (182)
.-+||+++|++|+|||||++++.++.+.. ..+|++..... .... ...+.+||++|+......+..++..++++++
T Consensus 5 ~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 84 (174)
T d1wmsa_ 5 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLL 84 (174)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEEE
Confidence 35799999999999999999999988877 55566544332 3333 4677899999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhc---cccCCCeEEEEEeCCCCCCCC-CHHHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEE---EELKGAVALIFANKQDLPGAL-DDAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
++|.+++.++.....|+..+... ....+.|+++|+||+|+.+.. ..++...... ....+++++|||++|.||
T Consensus 85 ~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~----~~~~~~~~e~Sak~~~gI 160 (174)
T d1wmsa_ 85 TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR----DNGDYPYFETSAKDATNV 160 (174)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH----HTTCCCEEECCTTTCTTH
T ss_pred EEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHH----HcCCCeEEEEcCCCCcCH
Confidence 99999999999998888766543 233568999999999996532 3333333322 123457999999999999
Q ss_pred HHHHHHHHHHHhc
Q 030120 167 FEGMDWLSNTLKS 179 (182)
Q Consensus 167 ~~l~~~i~~~~~~ 179 (182)
+++|+.|++.+..
T Consensus 161 ~e~f~~l~~~il~ 173 (174)
T d1wmsa_ 161 AAAFEEAVRRVLA 173 (174)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988754
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=2.3e-32 Score=179.73 Aligned_cols=159 Identities=13% Similarity=0.092 Sum_probs=119.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc--ccccccce--eeEEEEC--CEEEEEEECCCCCCCc-cchhhhcCCCCeEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIGFN--VETVQYN--NIKFQVWDLGGQTSIR-PYWRCYFPNTEAVI 89 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t~~~~--~~~~~~~--~~~~~~~D~~g~~~~~-~~~~~~~~~~d~ii 89 (182)
-+||+++|++|+|||||++++.+..+.. ..++++.. ...+... ...+.+||+++..... ..+..+++.+|+++
T Consensus 3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~~~~~~~~~~~~~i 82 (172)
T d2g3ya1 3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYL 82 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccccccccccccceee
Confidence 4799999999999999999999876543 44455433 3344443 4567889987643222 24567889999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030120 90 YVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
+|||++++.++.....|+..+......++.|+++|+||+|+.+. ...++..+ .+...++++++|||++|.|++
T Consensus 83 lvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~-----~a~~~~~~~~e~Sak~g~~i~ 157 (172)
T d2g3ya1 83 IVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRA-----CAVVFDCKFIETSAAVQHNVK 157 (172)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHH-----HHHHHTCEEEECBTTTTBSHH
T ss_pred eeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHH-----HHHHcCCeEEEEeCCCCcCHH
Confidence 99999999999999999988877666678999999999998653 22333221 123345689999999999999
Q ss_pred HHHHHHHHHHhcC
Q 030120 168 EGMDWLSNTLKSG 180 (182)
Q Consensus 168 ~l~~~i~~~~~~~ 180 (182)
++|+.|++.+...
T Consensus 158 ~~f~~l~~~i~~r 170 (172)
T d2g3ya1 158 ELFEGIVRQVRLR 170 (172)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 9999999987654
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=3.3e-31 Score=175.13 Aligned_cols=158 Identities=16% Similarity=0.254 Sum_probs=123.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-ccccccce-eeEEEE--CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFN-VETVQY--NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+.||+++|++|+|||||++++..+.+.+ +.||.... ...+.. ....+.+||++|++.+...+..+++.+|++++||
T Consensus 2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 81 (179)
T d1m7ba_ 2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF 81 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheee
Confidence 4689999999999999999999999877 66666532 233333 4477889999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--------------HHHHHHHhCcccccCCceEEEEe
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--------------DAAVSEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
|+++++||.....|+........ ++.|+++|+||+|+.+... .++.....+ ....++|++|
T Consensus 82 d~~~~~Sf~~~~~~~~~~~~~~~-~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~----~~~~~~y~E~ 156 (179)
T d1m7ba_ 82 DISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAK----QIGAATYIEC 156 (179)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH----HHTCSEEEEC
T ss_pred ecccCCCHHHHHHHHHHHHhccC-CcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHH----HhCCCeEEEE
Confidence 99999999999988877765433 5899999999999854311 111111111 1133579999
Q ss_pred cCCCCCC-HHHHHHHHHHHHhc
Q 030120 159 CAIKGEG-LFEGMDWLSNTLKS 179 (182)
Q Consensus 159 Sa~~~~~-v~~l~~~i~~~~~~ 179 (182)
||++|.| ++++|+.+++.+.+
T Consensus 157 SAk~~~n~i~~~F~~~~~~~l~ 178 (179)
T d1m7ba_ 157 SALQSENSVRDIFHVATLACVN 178 (179)
T ss_dssp BTTTBHHHHHHHHHHHHHHHHT
T ss_pred eCCCCCcCHHHHHHHHHHHHhc
Confidence 9999985 99999999987754
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=9.7e-31 Score=172.07 Aligned_cols=155 Identities=16% Similarity=0.203 Sum_probs=117.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccccccccccee-eEEEECC--EEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNV-ETVQYNN--IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
..+||+++|++|+|||||++++.++.+....++....+ ..+..++ ..+.+|||+|+... .+++.+|++++||
T Consensus 4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~ilVf 78 (175)
T d2bmja1 4 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIFVF 78 (175)
T ss_dssp CEEEEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEEEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEEEE
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCCcCCccceeEEEEeecCceEEEEEEeeccccccc-----ccccccceeEEEe
Confidence 36999999999999999999999999877656555443 3345544 67889999998754 3678899999999
Q ss_pred eCCCcccHHHHHHHHHHHHhc--cccCCCeEEEEEeCCCCCCCCC----HHHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030120 93 DSSDTDRIQTAKEEFHAILEE--EELKGAVALIFANKQDLPGALD----DAAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~--~~~~~~~iivv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
|++++.|++....|...+... ....+.|+++|+||.|+..... ..+..... ....+++|++|||++|.|+
T Consensus 79 d~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~----~~~~~~~~~e~SAk~~~~v 154 (175)
T d2bmja1 79 SLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALC----ADMKRCSYYETCATYGLNV 154 (175)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHH----HTSTTEEEEEEBTTTTBTH
T ss_pred ecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHH----HHhCCCeEEEeCCCCCcCH
Confidence 999999999998887776432 3335689999999999854321 22222221 2345678999999999999
Q ss_pred HHHHHHHHHHHhc
Q 030120 167 FEGMDWLSNTLKS 179 (182)
Q Consensus 167 ~~l~~~i~~~~~~ 179 (182)
+++|..+++.+..
T Consensus 155 ~~~F~~l~~~i~~ 167 (175)
T d2bmja1 155 DRVFQEVAQKVVT 167 (175)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987653
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=1.5e-31 Score=174.66 Aligned_cols=152 Identities=25% Similarity=0.370 Sum_probs=118.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cccccccee--eEEEE--CCEEEEEEECCCCCCCcc-chhhhcCCCCeEEE
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNV--ETVQY--NNIKFQVWDLGGQTSIRP-YWRCYFPNTEAVIY 90 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~~~D~~g~~~~~~-~~~~~~~~~d~ii~ 90 (182)
.+||+++|++|+|||||++++.++.+.. ..++.+... ..... ....+.+||++|...... .+..+++++|++++
T Consensus 2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il 81 (165)
T d1z06a1 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (165)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEE
Confidence 5799999999999999999999988777 555554333 33333 457889999999876654 46778999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHhCcccccCCceEEEEecCCC---CCC
Q 030120 91 VVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA--LDDAAVSEALELHKIKNRQWAIFKTCAIK---GEG 165 (182)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~ 165 (182)
|||++++.+++.+..|+..+.+.....+.|+++|+||+|+.+. ...++..... +..++++++|||++ +.|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~SAkt~~~~~~ 156 (165)
T d1z06a1 82 VYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFA-----DTHSMPLFETSAKNPNDNDH 156 (165)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCCEEECCSSSGGGGSC
T ss_pred EEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHH-----HHCCCEEEEEecccCCcCcC
Confidence 9999999999999999998877666678999999999998653 2333332222 23456799999997 459
Q ss_pred HHHHHHHH
Q 030120 166 LFEGMDWL 173 (182)
Q Consensus 166 v~~l~~~i 173 (182)
|+++|..|
T Consensus 157 V~e~F~~l 164 (165)
T d1z06a1 157 VEAIFMTL 164 (165)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999876
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=3.7e-29 Score=162.89 Aligned_cols=157 Identities=36% Similarity=0.639 Sum_probs=137.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcc
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTD 98 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 98 (182)
||+++|++|||||||+|++.++.+....||.+..............+||++|.......+..++..++++++++|..+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 81 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPE 81 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETTCGG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCeeeceeeEeEEEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccccchh
Confidence 79999999999999999999999888888888888888888899999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccc-------cCCceEEEEecCCCCCCHHHHHH
Q 030120 99 RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKI-------KNRQWAIFKTCAIKGEGLFEGMD 171 (182)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~Sa~~~~~v~~l~~ 171 (182)
++.....++..........+.|+++++||.|+.......++...+..... ....+++++|||++|+|++++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~~ 161 (166)
T d2qtvb1 82 RFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQ 161 (166)
T ss_dssp GHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSHHHHHH
T ss_pred hhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCHHHHHH
Confidence 98888888888877777778999999999999876666666666543221 23567899999999999999999
Q ss_pred HHHH
Q 030120 172 WLSN 175 (182)
Q Consensus 172 ~i~~ 175 (182)
+|.+
T Consensus 162 ~l~~ 165 (166)
T d2qtvb1 162 WLSQ 165 (166)
T ss_dssp HHTT
T ss_pred HHhC
Confidence 9865
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.96 E-value=1.5e-28 Score=162.91 Aligned_cols=165 Identities=30% Similarity=0.599 Sum_probs=132.4
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEE
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVV 92 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 92 (182)
+.++..||+++|++|||||||+++|.++.+....++.+.+...+.+.+..+..||++++......+..+....+++++++
T Consensus 9 ~~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (186)
T d1f6ba_ 9 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLV 88 (186)
T ss_dssp CTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEE
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhCCCCcceecccccceeEEEecccccccccccchhhhhhHHhhhhcccceeeeee
Confidence 45889999999999999999999999999888778888888888888999999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCccc------------ccCCceEEEEecC
Q 030120 93 DSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHK------------IKNRQWAIFKTCA 160 (182)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa 160 (182)
|..+..........+..........+.|+++++||.|+.......++.+...... ....++++++|||
T Consensus 89 d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 168 (186)
T d1f6ba_ 89 DCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 168 (186)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBT
T ss_pred eccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEEEEEeC
Confidence 9999988888887777776666667899999999999987766666665554221 1234578999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q 030120 161 IKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 161 ~~~~~v~~l~~~i~~~~ 177 (182)
++|+|++++|++|.+.+
T Consensus 169 ~tg~Gi~e~~~~l~~~i 185 (186)
T d1f6ba_ 169 LKRQGYGEGFRWMAQYI 185 (186)
T ss_dssp TTTBSHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 99999999999998764
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.96 E-value=2.3e-28 Score=161.31 Aligned_cols=157 Identities=18% Similarity=0.079 Sum_probs=113.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc--ccc--cccceeeEEEECCEEEEEEECCCCCCCccch--------hhhcCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPYW--------RCYFPN 84 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~~~ 84 (182)
.-.|+++|.+|+|||||+|+|++.+... ..+ |...........+..+.+|||||........ ..++.+
T Consensus 5 ~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 84 (178)
T d1wf3a1 5 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALAD 84 (178)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeecccccccccccccchhccccccccccc
Confidence 3479999999999999999999987543 222 3334555566788999999999976543332 345789
Q ss_pred CCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCC
Q 030120 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
+|++++|+|+.++.. ....++...++... .+.|+++|+||+|+.+. .++....... ......++++||++|.
T Consensus 85 ad~il~v~D~~~~~~--~~~~~i~~~l~~~~-~~~piilv~NK~Dl~~~--~~~~~~~~~~---~~~~~~~~~iSA~~~~ 156 (178)
T d1wf3a1 85 VNAVVWVVDLRHPPT--PEDELVARALKPLV-GKVPILLVGNKLDAAKY--PEEAMKAYHE---LLPEAEPRMLSALDER 156 (178)
T ss_dssp CSEEEEEEETTSCCC--HHHHHHHHHHGGGT-TTSCEEEEEECGGGCSS--HHHHHHHHHH---TSTTSEEEECCTTCHH
T ss_pred ccceeeeechhhhhc--ccccchhhheeccc-cchhhhhhhcccccccC--HHHHHHHHHh---hcccCceEEEecCCCC
Confidence 999999999998754 33345555554432 46899999999999653 2232222221 1233468899999999
Q ss_pred CHHHHHHHHHHHHhcCC
Q 030120 165 GLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 165 ~v~~l~~~i~~~~~~~~ 181 (182)
|++++++.|.+.+++.+
T Consensus 157 gi~~L~~~i~~~lpe~p 173 (178)
T d1wf3a1 157 QVAELKADLLALMPEGP 173 (178)
T ss_dssp HHHHHHHHHHTTCCBCC
T ss_pred CHHHHHHHHHHhCCCCC
Confidence 99999999999988754
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=9.7e-28 Score=160.88 Aligned_cols=164 Identities=25% Similarity=0.396 Sum_probs=131.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (182)
+.+||+++|..|||||||++++....+ .+.||+++....+......+++||++|++.+...+..++..++++++++|.+
T Consensus 1 ke~Kiv~lG~~~vGKTsll~r~~~~~~-~~~pTiG~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~ 79 (200)
T d2bcjq2 1 RELKLLLLGTGESGKSTFIKQMRIIHG-SGVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALS 79 (200)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTS-SCCCCCSCEEEEEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEGG
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCCCC-CCCceeeEEEEEEeccceeeeeccccccccccccccccccccceeeEeeecc
Confidence 478999999999999999999988876 4679999998888889999999999999999999999999999999999998
Q ss_pred Ccc----------cHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC----C--------------CHHHHH-----HH
Q 030120 96 DTD----------RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA----L--------------DDAAVS-----EA 142 (182)
Q Consensus 96 ~~~----------s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~----~--------------~~~~~~-----~~ 142 (182)
+.. .+......+..++......+.|+++++||.|+... . ...... ..
T Consensus 80 ~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f 159 (200)
T d2bcjq2 80 EYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMF 159 (200)
T ss_dssp GGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHH
T ss_pred chhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHH
Confidence 754 34555667777777766678999999999997311 0 111111 11
Q ss_pred hCcccccCCceEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030120 143 LELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 143 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
..........+.+++|||++|.||+++|+.+.+.+.+.
T Consensus 160 ~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~ 197 (200)
T d2bcjq2 160 VDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 197 (200)
T ss_dssp HTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHH
Confidence 22223344667889999999999999999998887643
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.95 E-value=1.3e-27 Score=157.75 Aligned_cols=161 Identities=18% Similarity=0.173 Sum_probs=113.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccccc----------cccceeeEEEECCEEEEEEECCCCCCCccchhhhcCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVSTIP----------TIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPN 84 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~----------t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 84 (182)
-+.++|+++|++|+|||||+|+|++.......+ +.......+...+..+.++|+||+..+.......+..
T Consensus 3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~ 82 (179)
T d1wb1a4 3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI 82 (179)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhh
Confidence 467899999999999999999998754322111 1122334445578899999999999888888889999
Q ss_pred CCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhC---cccccCCceEEEEecCC
Q 030120 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALE---LHKIKNRQWAIFKTCAI 161 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~Sa~ 161 (182)
+|++++++|+.++...+. ...+..+ .. .++|+++|+||+|+.+............ .........+++++||+
T Consensus 83 ~d~~ilv~d~~~g~~~~~-~~~~~~~-~~---~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~ 157 (179)
T d1wb1a4 83 IDLALIVVDAKEGPKTQT-GEHMLIL-DH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAK 157 (179)
T ss_dssp CCEEEEEEETTTCSCHHH-HHHHHHH-HH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTT
T ss_pred ccccccccccccccchhh-hhhhhhh-hh---cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcc
Confidence 999999999998754332 2222222 22 4789999999999975422222211111 11123345679999999
Q ss_pred CCCCHHHHHHHHHHHHhcC
Q 030120 162 KGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 162 ~~~~v~~l~~~i~~~~~~~ 180 (182)
+|+|++++++.|.+.+++.
T Consensus 158 ~g~gi~eL~~~I~~~l~~~ 176 (179)
T d1wb1a4 158 TGFGVDELKNLIITTLNNA 176 (179)
T ss_dssp TCTTHHHHHHHHHHHHHHS
T ss_pred CCcCHHHHHHHHHhcCCcc
Confidence 9999999999999998875
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=8.9e-27 Score=151.22 Aligned_cols=149 Identities=19% Similarity=0.241 Sum_probs=109.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc--ccc--cccceeeEEEECCEEEEEEECCCCCCCccc--------hhhhcCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS--TIP--TIGFNVETVQYNNIKFQVWDLGGQTSIRPY--------WRCYFPN 84 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~~~ 84 (182)
.+||+++|++|+|||||+|+|++.+... ..+ +.......+...+..+.++|+||....... ...++..
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ 80 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHh
Confidence 3799999999999999999999887543 222 333445566778899999999996544322 2345678
Q ss_pred CCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCC
Q 030120 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
+|++++++|..+..+......|.. ++.... .+.|+++|+||+|+.+... ......+.+++++||++|.
T Consensus 81 ~d~~i~~~d~~~~~~~~~~~~~~~-~~~~~~-~~~~iilv~NK~Dl~~~~~----------~~~~~~~~~~~~iSAk~~~ 148 (161)
T d2gj8a1 81 ADRVLFMVDGTTTDAVDPAEIWPE-FIARLP-AKLPITVVRNKADITGETL----------GMSEVNGHALIRLSARTGE 148 (161)
T ss_dssp CSEEEEEEETTTCCCCSHHHHCHH-HHHHSC-TTCCEEEEEECHHHHCCCC----------EEEEETTEEEEECCTTTCT
T ss_pred ccccceeeccccccchhhhhhhhh-hhhhcc-cccceeeccchhhhhhhHH----------HHHHhCCCcEEEEECCCCC
Confidence 999999999998877655554333 333222 4689999999999854311 1223456789999999999
Q ss_pred CHHHHHHHHHHHH
Q 030120 165 GLFEGMDWLSNTL 177 (182)
Q Consensus 165 ~v~~l~~~i~~~~ 177 (182)
|+++++++|.+.+
T Consensus 149 gi~~L~~~l~~~l 161 (161)
T d2gj8a1 149 GVDVLRNHLKQSM 161 (161)
T ss_dssp THHHHHHHHHHHC
T ss_pred CHHHHHHHHHhhC
Confidence 9999999998864
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.94 E-value=2.2e-26 Score=153.65 Aligned_cols=161 Identities=22% Similarity=0.407 Sum_probs=124.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (182)
+++||+++|..|||||||+++|....+ ||.++....+......+.+||++|++.+...+..+++.++++++|+|.+
T Consensus 1 ~e~KivllG~~~vGKTsl~~r~~~~~~----~t~~~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~ 76 (195)
T d1svsa1 1 REVKLLLLGAGESGKSTIVKQMKIIHE----AGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALS 76 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHS----CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGG
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC----CCccEEEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeEEeec
Confidence 478999999999999999999976543 5666777778889999999999999999999999999999999999998
Q ss_pred CcccH----------HHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC-----------------CCHHHHHHHh-----
Q 030120 96 DTDRI----------QTAKEEFHAILEEEELKGAVALIFANKQDLPGA-----------------LDDAAVSEAL----- 143 (182)
Q Consensus 96 ~~~s~----------~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~-----------------~~~~~~~~~~----- 143 (182)
+.+++ .....++..++......+.|+++++||+|+... ....+.....
T Consensus 77 ~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 156 (195)
T d1svsa1 77 DYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFE 156 (195)
T ss_dssp GGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHH
T ss_pred ccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHHH
Confidence 87654 344556666666666678999999999986210 1111111111
Q ss_pred Cc-ccccCCceEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030120 144 EL-HKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 144 ~~-~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
.. .......+.+++|||+++.||+++|+.+.+.+.+.
T Consensus 157 ~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~ 194 (195)
T d1svsa1 157 DLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN 194 (195)
T ss_dssp TTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence 11 11223567888999999999999999999877643
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.94 E-value=2.3e-26 Score=151.90 Aligned_cols=155 Identities=23% Similarity=0.302 Sum_probs=104.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEE-CCEEEEEEECCCCCCC-------ccchhhhcCCCCe
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQY-NNIKFQVWDLGGQTSI-------RPYWRCYFPNTEA 87 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~-------~~~~~~~~~~~d~ 87 (182)
+|+++|.+|+|||||+|+|++..... ...++......... .+..+.+|||||.... .......+..+++
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~ 82 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV 82 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhh
Confidence 58999999999999999998876533 22233344443333 5678999999995332 1223445688999
Q ss_pred EEEEEeCCCcc--cHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCCC
Q 030120 88 VIYVVDSSDTD--RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEG 165 (182)
Q Consensus 88 ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (182)
+++++|..... .......++... .....++|+++|+||+|+.+....+++.+.+ ...+.+++++||++|+|
T Consensus 83 ~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~-----~~~~~~~~~iSA~tg~g 155 (180)
T d1udxa2 83 LLYVLDAADEPLKTLETLRKEVGAY--DPALLRRPSLVALNKVDLLEEEAVKALADAL-----AREGLAVLPVSALTGAG 155 (180)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHH--CHHHHHSCEEEEEECCTTSCHHHHHHHHHHH-----HTTTSCEEECCTTTCTT
T ss_pred hhhhcccccccccchhhhhhhhhcc--ccccchhhhhhhhhhhhhhhHHHHHHHHHHH-----HhcCCeEEEEEcCCCCC
Confidence 99999987552 122222222221 1122357999999999997543333332222 23466799999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 030120 166 LFEGMDWLSNTLKSG 180 (182)
Q Consensus 166 v~~l~~~i~~~~~~~ 180 (182)
+++|++.|.+.+.+.
T Consensus 156 id~L~~~i~~~l~~~ 170 (180)
T d1udxa2 156 LPALKEALHALVRST 170 (180)
T ss_dssp HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999988754
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.94 E-value=2.2e-26 Score=154.31 Aligned_cols=162 Identities=25% Similarity=0.365 Sum_probs=119.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (182)
+.+||+++|++|||||||++++. ......||+++....+......+.+||++|++.+...+..+++.+++++++++.+
T Consensus 1 r~iKivllG~~~vGKTsll~r~~--f~~~~~pTiG~~~~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~ 78 (200)
T d1zcba2 1 RLVKILLLGAGESGKSTFLKQMR--IIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSS 78 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH--HHHSCCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETT
T ss_pred CeEEEEEECCCCCCHHHHHHHHh--cCCCCCCeeeeEEEEEeeeeeeeeeecccceeeecccccccccccceeEEEEEcC
Confidence 35799999999999999999993 2233788999999999999999999999999999999999999999999999998
Q ss_pred Ccc----------cHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC------------------CCHHHHHHHhCc--
Q 030120 96 DTD----------RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA------------------LDDAAVSEALEL-- 145 (182)
Q Consensus 96 ~~~----------s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~------------------~~~~~~~~~~~~-- 145 (182)
+.. ++.....++..++......+.|+++++||+|+.+. .......+.+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f 158 (200)
T d1zcba2 79 EFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECF 158 (200)
T ss_dssp CTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHH
T ss_pred CcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHH
Confidence 754 35666777788887777788999999999997321 111122221111
Q ss_pred ----ccccCCceEEEEecCCCCCCHHHHHHHHHHHHhc
Q 030120 146 ----HKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 146 ----~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
.......+.+++|||+++.||+++|+.+.+.+.+
T Consensus 159 ~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~ 196 (200)
T d1zcba2 159 RGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH 196 (200)
T ss_dssp HTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHH
Confidence 1112244667889999999999999999887654
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.94 E-value=3.1e-26 Score=151.95 Aligned_cols=161 Identities=16% Similarity=0.120 Sum_probs=109.4
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc----ccccccceeeEEEECCEEEEEEECCCCCCCc------------cc
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIR------------PY 77 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~------------~~ 77 (182)
..+.+||+++|.+|+|||||+|+|++..... ...+.......+...+..+.++|+||..... ..
T Consensus 5 ~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~ 84 (186)
T d1mkya2 5 ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR 84 (186)
T ss_dssp CCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeeeccCCccccccccccccccchhHH
Confidence 3567999999999999999999999877432 2223334455667788999999999964322 22
Q ss_pred hhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--HHHHHHHhCcccccCCceEE
Q 030120 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALD--DAAVSEALELHKIKNRQWAI 155 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (182)
....++.+|++++|+|+..+... ....+...+.. .+.|+++|+||+|+..... ..++.+.+..........++
T Consensus 85 ~~~~~~~~dvii~v~d~~~~~~~--~~~~~~~~~~~---~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i 159 (186)
T d1mkya2 85 VVDSIEKADVVVIVLDATQGITR--QDQRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL 159 (186)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCH--HHHHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHhcCCEEEEeecccccchh--hHHHHHHHHHH---cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeE
Confidence 34456778999999999877442 22222333332 4689999999999864432 34444444333223345679
Q ss_pred EEecCCCCCCHHHHHHHHHHHHhc
Q 030120 156 FKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 156 ~~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
+++||++|.|+++|++.|.+.+..
T Consensus 160 ~~vSa~~g~gv~~L~~~i~~~~~~ 183 (186)
T d1mkya2 160 IFTSADKGWNIDRMIDAMNLAYAS 183 (186)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999887654
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.93 E-value=3.8e-26 Score=149.65 Aligned_cols=154 Identities=19% Similarity=0.184 Sum_probs=102.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc----ccccccceeeEEEECCEEEEEEECCCCCCCc---------cchhhhcCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIR---------PYWRCYFPN 84 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~~~~~~~~~ 84 (182)
..|+++|++|+|||||+|+|++..... ...|.......+......+.+||++|..... ......+..
T Consensus 1 a~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 80 (171)
T d1mkya1 1 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 80 (171)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeecccccccccccccccccc
Confidence 368999999999999999999877542 2224445566677788999999999943221 123445688
Q ss_pred CCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCC
Q 030120 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
+|+++++.+...+..... ..+...++. .+.|+++|+||+|+.+.... +..... .......++++||++|.
T Consensus 81 ad~i~~~~~~~~~~~~~~--~~~~~~l~~---~~~pviiv~NK~Dl~~~~~~-~~~~~~----~~~~~~~~i~iSAk~g~ 150 (171)
T d1mkya1 81 ADLVLFVVDGKRGITKED--ESLADFLRK---STVDTILVANKAENLREFER-EVKPEL----YSLGFGEPIPVSAEHNI 150 (171)
T ss_dssp CSEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCEEEEEESCCSHHHHHH-HTHHHH----GGGSSCSCEECBTTTTB
T ss_pred CcEEEEeecccccccccc--ccccccccc---ccccccccchhhhhhhhhhh-HHHHHH----HhcCCCCeEEEecCCCC
Confidence 999999999987754332 223333332 36899999999998532111 111111 11223357899999999
Q ss_pred CHHHHHHHHHHHHhcCC
Q 030120 165 GLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 165 ~v~~l~~~i~~~~~~~~ 181 (182)
|+++++++|.+.+++..
T Consensus 151 gid~L~~~i~~~l~e~~ 167 (171)
T d1mkya1 151 NLDTMLETIIKKLEEKG 167 (171)
T ss_dssp SHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhCCCCC
Confidence 99999999999988753
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.93 E-value=1.4e-25 Score=145.32 Aligned_cols=145 Identities=24% Similarity=0.294 Sum_probs=106.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc--c--cccccceeeEEEECCEEEEEEECCCCCCCc---------cchhhhcCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS--T--IPTIGFNVETVQYNNIKFQVWDLGGQTSIR---------PYWRCYFPN 84 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~--~--~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~~~~~~~~~ 84 (182)
+||+++|.+|+|||||+|+|.+.+... . ..+.......+...+..+.+|||||..... ......+..
T Consensus 1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 80 (160)
T d1xzpa2 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEK 80 (160)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHh
Confidence 589999999999999999999876443 2 223334556677789999999999943211 112334578
Q ss_pred CCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCCC
Q 030120 85 TEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGE 164 (182)
Q Consensus 85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (182)
+|++++|+|++++.......- .... ...++++++||+|+.+....+++...+.. ..+++++||++|.
T Consensus 81 ad~ii~v~d~~~~~~~~~~~~-~~~~------~~~~~i~~~~k~d~~~~~~~~~~~~~~~~------~~~~~~vSA~~g~ 147 (160)
T d1xzpa2 81 ADIVLFVLDASSPLDEEDRKI-LERI------KNKRYLVVINKVDVVEKINEEEIKNKLGT------DRHMVKISALKGE 147 (160)
T ss_dssp CSEEEEEEETTSCCCHHHHHH-HHHH------TTSSEEEEEEECSSCCCCCHHHHHHHHTC------STTEEEEEGGGTC
T ss_pred CCEEEEEEeCCCCcchhhhhh-hhhc------ccccceeeeeeccccchhhhHHHHHHhCC------CCcEEEEECCCCC
Confidence 999999999998876443321 1111 35789999999999887777666655542 2358999999999
Q ss_pred CHHHHHHHHHH
Q 030120 165 GLFEGMDWLSN 175 (182)
Q Consensus 165 ~v~~l~~~i~~ 175 (182)
|+++|+++|.+
T Consensus 148 gi~~L~~~I~k 158 (160)
T d1xzpa2 148 GLEKLEESIYR 158 (160)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHh
Confidence 99999999876
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.93 E-value=7e-26 Score=149.96 Aligned_cols=158 Identities=16% Similarity=0.171 Sum_probs=99.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc-ccccccceeeEEEECCEEEEEEECCCCCCCc---------------cchhhhc
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVS-TIPTIGFNVETVQYNNIKFQVWDLGGQTSIR---------------PYWRCYF 82 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~---------------~~~~~~~ 82 (182)
.|+++|.+|+|||||+|+|+++.... ..|.++.....+... ++.+|||||..... .......
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~~~~~~~--~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNA 79 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeecccccccc--cceecccCCceeccccccccccccchhhhhhhhhcc
Confidence 68999999999999999999887543 333333333344444 46789999953221 1123456
Q ss_pred CCCCeEEEEEeCCCcccHHHHHH------HHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCc---ccccCCce
Q 030120 83 PNTEAVIYVVDSSDTDRIQTAKE------EFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALEL---HKIKNRQW 153 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~------~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~---~~~~~~~~ 153 (182)
+.+|++++|+|+........... .-..+.......+.|+++|+||+|+.+. .++....... ........
T Consensus 80 ~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~ 157 (184)
T d2cxxa1 80 KNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKN--VQEVINFLAEKFEVPLSEIDK 157 (184)
T ss_dssp GGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSC--HHHHHHHHHHHHTCCGGGHHH
T ss_pred cccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHcCCCEEEEEeeeehhhh--HHHHHHHHHHHhcccccccCC
Confidence 78999999999975422111100 0011111112247899999999998643 2222222211 11122234
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhcC
Q 030120 154 AIFKTCAIKGEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 154 ~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 180 (182)
.++++||++|.|++++++.|.+.+++.
T Consensus 158 ~~~~vSA~~g~gi~~L~~~i~~~l~e~ 184 (184)
T d2cxxa1 158 VFIPISAKFGDNIERLKNRIFEVIRER 184 (184)
T ss_dssp HEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHccCC
Confidence 588999999999999999999998863
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.92 E-value=4.7e-25 Score=149.86 Aligned_cols=161 Identities=25% Similarity=0.382 Sum_probs=126.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 95 (182)
+.+||+++|..|||||||++++.... ..||+++....+.+++..+.+||++|++.++..|..++..++++++++|.+
T Consensus 5 ~~~KilllG~~~vGKTsll~~~~~~~---~~pTiG~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~s 81 (221)
T d1azta2 5 ATHRLLLLGAGESGKSTIVKQMRILH---VVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASS 81 (221)
T ss_dssp HSEEEEEECSTTSSHHHHHHHHHHHH---CCCCCSCEEEEEEETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEETT
T ss_pred hcCEEEEECCCCCCHHHHHHHHhcCC---cCCCCCeEEEEEEECcEEEEEEecCccceeccchhhhcccccceEEEEEcc
Confidence 56899999999999999999996543 458999999999999999999999999999999999999999999999998
Q ss_pred Cc----------ccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC------CCH-----------------------
Q 030120 96 DT----------DRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA------LDD----------------------- 136 (182)
Q Consensus 96 ~~----------~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~------~~~----------------------- 136 (182)
+. .+.......+..++......+.|+++++||+|+.+. ...
T Consensus 82 ~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~ 161 (221)
T d1azta2 82 SYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGED 161 (221)
T ss_dssp GGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCCTTCC
T ss_pred ccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccccCCCc
Confidence 53 345666777888888877788999999999998421 110
Q ss_pred ---HHHHHHh--------CcccccCCceEEEEecCCCCCCHHHHHHHHHHHHhc
Q 030120 137 ---AAVSEAL--------ELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 137 ---~~~~~~~--------~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
.+....+ .........+..+.|||++..+++.+|+.+.+.+..
T Consensus 162 ~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~ 215 (221)
T d1azta2 162 PRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR 215 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHH
Confidence 0111111 111112345677899999999999999887766543
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.92 E-value=4.4e-25 Score=147.43 Aligned_cols=158 Identities=13% Similarity=0.090 Sum_probs=99.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECCEEEEEEECCCCCCCcc-------------ch
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP-------------YW 78 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------------~~ 78 (182)
+.-.+|+++|.+|+|||||+|+|++..... ..++......... ....+.+.|+++...... ..
T Consensus 21 ~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T d1svia_ 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI-INDELHFVDVPGYGFAKVSKSEREAWGRMIETY 99 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE-ETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccccc-ccccceEEEEEeeccccccccccchhhhHHhhh
Confidence 333499999999999999999999876432 2222222222222 234556677776322111 12
Q ss_pred hhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEe
Q 030120 79 RCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKT 158 (182)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (182)
......++++++++|+.++.. .....+...+.. .+.|+++|+||+|+.+.....+..+.+..........+++++
T Consensus 100 ~~~~~~~~~vi~viD~~~~~~--~~~~~~~~~l~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 174 (195)
T d1svia_ 100 ITTREELKAVVQIVDLRHAPS--NDDVQMYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILF 174 (195)
T ss_dssp HHHCTTEEEEEEEEETTSCCC--HHHHHHHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEEC
T ss_pred hccccchhhhhhhhhcccccc--cccccccccccc---ccCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCEEEE
Confidence 344567899999999987643 222223333333 468999999999986554444444444333334456789999
Q ss_pred cCCCCCCHHHHHHHHHHHHh
Q 030120 159 CAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 159 Sa~~~~~v~~l~~~i~~~~~ 178 (182)
||++|+|+++++++|.+.+.
T Consensus 175 SA~~~~gi~el~~~i~~~l~ 194 (195)
T d1svia_ 175 SSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp CTTTCTTHHHHHHHHHHHHT
T ss_pred eCCCCCCHHHHHHHHHHHhC
Confidence 99999999999999998774
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.92 E-value=2.1e-25 Score=148.93 Aligned_cols=162 Identities=14% Similarity=0.070 Sum_probs=108.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc------ccccccceeeEE-----------------------EECCEEEE
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS------TIPTIGFNVETV-----------------------QYNNIKFQ 64 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~------~~~t~~~~~~~~-----------------------~~~~~~~~ 64 (182)
.+..++|+++|+.++|||||+++|.+..... ...|........ ......+.
T Consensus 2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (195)
T d1kk1a3 2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 81 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence 4567899999999999999999998643211 111111111110 11235689
Q ss_pred EEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhC
Q 030120 65 VWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALE 144 (182)
Q Consensus 65 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~ 144 (182)
++||||+..+.......+..+|++++++|+.++.......+.+... ... ...++++++||+|+.+.....+....+.
T Consensus 82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~-~~~--~~~~iiv~inK~D~~d~~~~~~~~~~~~ 158 (195)
T d1kk1a3 82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL-QII--GQKNIIIAQNKIELVDKEKALENYRQIK 158 (195)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH-HHH--TCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHH-HHh--cCccceeeeecccchhhHHHHHHHHHHH
Confidence 9999999999888888889999999999999874333334333332 221 2356889999999875422222221111
Q ss_pred c--ccccCCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 030120 145 L--HKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 145 ~--~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
. .......++++++||++|.|+++|++.|.+.+|
T Consensus 159 ~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP 194 (195)
T d1kk1a3 159 EFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 194 (195)
T ss_dssp HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHCc
Confidence 1 111234578999999999999999999998775
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.91 E-value=5.5e-25 Score=145.80 Aligned_cols=159 Identities=23% Similarity=0.246 Sum_probs=103.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEE-CCEEEEEEECCCCC----CCcc---chhhhcCCCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQY-NNIKFQVWDLGGQT----SIRP---YWRCYFPNTE 86 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~-~~~~~~~~D~~g~~----~~~~---~~~~~~~~~d 86 (182)
.+|+++|++|||||||+|+|.+..... ...|.........+ .+..+.+|||||.. .... .....+..++
T Consensus 2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~ 81 (185)
T d1lnza2 2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 81 (185)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhh
Confidence 369999999999999999998877533 23344455555555 45689999999941 1111 1223345688
Q ss_pred eEEEEEeCCCcccHHHHHH--HH--HHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCC
Q 030120 87 AVIYVVDSSDTDRIQTAKE--EF--HAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIK 162 (182)
Q Consensus 87 ~ii~v~d~~~~~s~~~~~~--~~--~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (182)
.++++++............ .. ..........++|+++|+||+|+.+. .+..+.+... ...+.+++++||++
T Consensus 82 ~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~---~~~~~~~~~~--~~~~~~v~~iSA~~ 156 (185)
T d1lnza2 82 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA---AENLEAFKEK--LTDDYPVFPISAVT 156 (185)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH---HHHHHHHHHH--CCSCCCBCCCSSCC
T ss_pred hhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhH---HHHHHHHHHH--hccCCcEEEEECCC
Confidence 9999988765433222211 11 11222233346899999999999653 2222222111 23456789999999
Q ss_pred CCCHHHHHHHHHHHHhcCC
Q 030120 163 GEGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 163 ~~~v~~l~~~i~~~~~~~~ 181 (182)
|.|+++|++.|.+.+++.+
T Consensus 157 g~Gi~~L~~~i~~~L~~~p 175 (185)
T d1lnza2 157 REGLRELLFEVANQLENTP 175 (185)
T ss_dssp SSTTHHHHHHHHHHHTSCC
T ss_pred CCCHHHHHHHHHHhhhhCC
Confidence 9999999999999987643
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.91 E-value=1.5e-24 Score=147.83 Aligned_cols=154 Identities=21% Similarity=0.156 Sum_probs=102.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCccc-c--cccccceee------------------EEEECCEEEEEEECCCCCCCccch
Q 030120 20 ILVLGLDNAGKTTILYRLQMGEVVS-T--IPTIGFNVE------------------TVQYNNIKFQVWDLGGQTSIRPYW 78 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~~~~~-~--~~t~~~~~~------------------~~~~~~~~~~~~D~~g~~~~~~~~ 78 (182)
|+|+|++++|||||+|+|++..... . ..+...... .+...+..+.++||||+..+....
T Consensus 8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~ 87 (227)
T d1g7sa4 8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR 87 (227)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence 9999999999999999998643221 0 001111111 122356689999999999998888
Q ss_pred hhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH------------------HHHH
Q 030120 79 RCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD------------------AAVS 140 (182)
Q Consensus 79 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~------------------~~~~ 140 (182)
...+..+|++|+|+|+.++..... ...+..+ .. .+.|+++++||+|+...... ....
T Consensus 88 ~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~-~~---~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 162 (227)
T d1g7sa4 88 KRGGALADLAILIVDINEGFKPQT-QEALNIL-RM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLD 162 (227)
T ss_dssp CSSSBSCSEEEEEEETTTCCCHHH-HHHHHHH-HH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHH
T ss_pred hhcccccceEEEEEecccCcccch-hHHHHHh-hc---CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHH
Confidence 888899999999999998754322 2222222 22 47899999999998643211 0000
Q ss_pred HH----hC---c----------ccccCCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 030120 141 EA----LE---L----------HKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 141 ~~----~~---~----------~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
.. .. . ........+++++||++|.|+++|++.|.+...
T Consensus 163 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~ 217 (227)
T d1g7sa4 163 TKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (227)
T ss_dssp HHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 00 00 0 000123468999999999999999999877553
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.91 E-value=1.6e-24 Score=145.67 Aligned_cols=162 Identities=15% Similarity=0.084 Sum_probs=107.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc------ccccccce--eeEE--------------------------EECC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS------TIPTIGFN--VETV--------------------------QYNN 60 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~------~~~t~~~~--~~~~--------------------------~~~~ 60 (182)
++.++|+++|+.++|||||+++|++..... ...+.... .... ....
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL 85 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence 456899999999999999999998633111 00000000 0000 0012
Q ss_pred EEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHH
Q 030120 61 IKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVS 140 (182)
Q Consensus 61 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~ 140 (182)
..+.++|||||..|.......+..+|++++|+|+.++-......+.+.... .. .-.|+++++||+|+.+........
T Consensus 86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~-~~--~i~~iIV~vNK~Dl~~~~~~~~~~ 162 (205)
T d2qn6a3 86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALG-II--GVKNLIIVQNKVDVVSKEEALSQY 162 (205)
T ss_dssp EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHH-HT--TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHH-Hc--CCceeeeccccCCCccchHHHHHH
Confidence 478999999999998888888999999999999998743333333333332 21 235889999999997543222221
Q ss_pred HHhCc--ccccCCceEEEEecCCCCCCHHHHHHHHHHHHhc
Q 030120 141 EALEL--HKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 179 (182)
Q Consensus 141 ~~~~~--~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 179 (182)
..... .......++++++||++|.|++++++.|.+.++.
T Consensus 163 ~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~ 203 (205)
T d2qn6a3 163 RQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT 203 (205)
T ss_dssp HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCCC
Confidence 11111 1123346789999999999999999999998875
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.91 E-value=2.5e-23 Score=140.01 Aligned_cols=157 Identities=25% Similarity=0.347 Sum_probs=111.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEE---CCEEEEEEECCCCCCCc-cchhhhcCCCCeEEEEEeC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQY---NNIKFQVWDLGGQTSIR-PYWRCYFPNTEAVIYVVDS 94 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~D~~g~~~~~-~~~~~~~~~~d~ii~v~d~ 94 (182)
+|+++|++|+|||||+++|.++.+....+|.+.+...+.+ ....+.+||++|++.+. ..+..++..++++++|+|+
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~ 81 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDS 81 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEEc
Confidence 6999999999999999999999888877778777777665 46789999999998775 4567788999999999999
Q ss_pred CCccc-HHHHHHHHHHHHhc--cccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcc-------------------------
Q 030120 95 SDTDR-IQTAKEEFHAILEE--EELKGAVALIFANKQDLPGALDDAAVSEALELH------------------------- 146 (182)
Q Consensus 95 ~~~~s-~~~~~~~~~~~~~~--~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~------------------------- 146 (182)
++..+ ......++..++.. ....++|+++++||+|+......+++.+.+...
T Consensus 82 ~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~~i~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (207)
T d2fh5b1 82 AAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQL 161 (207)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCS
T ss_pred ccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCHHHHHHHHHHHhhhhhhccccccceeehhhhhhhhh
Confidence 98755 34444455544432 122458999999999998665554443322100
Q ss_pred ---------cccCCceEEEEecCCCCCC------HHHHHHHHHH
Q 030120 147 ---------KIKNRQWAIFKTCAIKGEG------LFEGMDWLSN 175 (182)
Q Consensus 147 ---------~~~~~~~~~~~~Sa~~~~~------v~~l~~~i~~ 175 (182)
........++++|++++.+ ++.+-+|+.+
T Consensus 162 ~~~~~~~~~~~~~~~v~~~~~S~~~~~~~~~~~~i~~~~~wl~~ 205 (207)
T d2fh5b1 162 GKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAK 205 (207)
T ss_dssp SCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHH
T ss_pred cccchhhhHHhccCCcEEEEeeecCCCcccccccHHHHHHHHHH
Confidence 0001346799999999876 7777777654
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.90 E-value=4.1e-24 Score=141.96 Aligned_cols=160 Identities=14% Similarity=0.079 Sum_probs=111.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC-------Cc----------cc--ccccccceeeEEEECCEEEEEEECCCCCCCcc
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMG-------EV----------VS--TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRP 76 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~-------~~----------~~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 76 (182)
..++|+++|+.++|||||+++|++. .. .+ ..-|.......+.+.+..+.++||||+..|..
T Consensus 2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~ 81 (196)
T d1d2ea3 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (196)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHH
Confidence 4589999999999999999999741 00 01 11122333344556789999999999999988
Q ss_pred chhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH-H----HHHHHhCcccccCC
Q 030120 77 YWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDD-A----AVSEALELHKIKNR 151 (182)
Q Consensus 77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~----~~~~~~~~~~~~~~ 151 (182)
.....+..+|++++|+|+.++..- +..+.+...... ...|+|+++||+|+.+.... + ++...+........
T Consensus 82 ~~~~~~~~aD~allVVda~~G~~~-QT~~~~~~a~~~---~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 157 (196)
T d1d2ea3 82 NMITGTAPLDGCILVVAANDGPMP-QTREHLLLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE 157 (196)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCH-HHHHHHHHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHhhcCeEEEEEEcCCCCch-hHHHHHHHHHHh---cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCcc
Confidence 888889999999999999988542 333333333222 24679999999998653221 1 22222222222334
Q ss_pred ceEEEEecCCCC----------CCHHHHHHHHHHHHhc
Q 030120 152 QWAIFKTCAIKG----------EGLFEGMDWLSNTLKS 179 (182)
Q Consensus 152 ~~~~~~~Sa~~~----------~~v~~l~~~i~~~~~~ 179 (182)
..+++++||++| +++.+|++.+.+.++.
T Consensus 158 ~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP~ 195 (196)
T d1d2ea3 158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (196)
T ss_dssp TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred cCEEEEEEccccccccCcccccCCHHHHHHHHHhhCCC
Confidence 578999999998 5899999999888764
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=6.3e-22 Score=130.14 Aligned_cols=157 Identities=18% Similarity=0.097 Sum_probs=104.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc--cc-cccc-ceeeEEEECCEEEEEEECCCCCCCcc---------chhhhcC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS--TI-PTIG-FNVETVQYNNIKFQVWDLGGQTSIRP---------YWRCYFP 83 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~-~t~~-~~~~~~~~~~~~~~~~D~~g~~~~~~---------~~~~~~~ 83 (182)
.-.|+++|.+|+|||||+|+|.+.+... .. .+.. ............+..+|++|...... .......
T Consensus 5 ~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (179)
T d1egaa1 5 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIG 84 (179)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccchh
Confidence 3458999999999999999999987543 11 2222 33444455778888999998543211 1122345
Q ss_pred CCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEecCCCC
Q 030120 84 NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG 163 (182)
Q Consensus 84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (182)
.+++++++.|..+.. .....+...+.. ...|.++|+||+|+... ...+..............+++++||++|
T Consensus 85 ~~~~~l~~~d~~~~~--~~~~~~~~~l~~----~~~~~i~v~~k~d~~~~--~~~~~~~~~~~~~~~~~~~~~~vSA~~g 156 (179)
T d1egaa1 85 DVELVIFVVEGTRWT--PDDEMVLNKLRE----GKAPVILAVNKVDNVQE--KADLLPHLQFLASQMNFLDIVPISAETG 156 (179)
T ss_dssp CEEEEEEEEETTCCC--HHHHHHHHHHHS----SSSCEEEEEESTTTCCC--HHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred hcceeEEEEecCccc--hhHHHHHHHhhh----ccCceeeeeeeeeccch--hhhhhhHhhhhhhhcCCCCEEEEeCcCC
Confidence 678888888887653 233333333322 35789999999998654 2233333322223345568999999999
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 030120 164 EGLFEGMDWLSNTLKSGG 181 (182)
Q Consensus 164 ~~v~~l~~~i~~~~~~~~ 181 (182)
+|+++|++.|.+.+++.+
T Consensus 157 ~gi~~L~~~i~~~lpe~~ 174 (179)
T d1egaa1 157 LNVDTIAAIVRKHLPEAT 174 (179)
T ss_dssp TTHHHHHHHHHTTCCBCC
T ss_pred CCHHHHHHHHHHhCCCCC
Confidence 999999999999998764
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.87 E-value=4.8e-22 Score=132.96 Aligned_cols=142 Identities=19% Similarity=0.171 Sum_probs=98.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC--------Cccc------------ccccccceeeEEEECCEEEEEEECCCCCCCc
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMG--------EVVS------------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~--------~~~~------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 75 (182)
+.++|+++|++++|||||+++|+.. .... ..-|+......+.+++.++.++||||+..+-
T Consensus 2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~ 81 (204)
T d2c78a3 2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI 81 (204)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhH
Confidence 4689999999999999999999631 0000 1224555666777899999999999999999
Q ss_pred cchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCCCCC-HH----HHHHHhCccccc
Q 030120 76 PYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPGALD-DA----AVSEALELHKIK 149 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~-~~----~~~~~~~~~~~~ 149 (182)
......+..+|++++|+|+.++...+. .+.+..... .+.| +++++||+|+.+... .+ ++...+......
T Consensus 82 ~~~~~~~~~aD~avlVvda~~Gv~~qt-~~~~~~~~~----~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~ 156 (204)
T d2c78a3 82 KNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP 156 (204)
T ss_dssp HHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHH----cCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 988899999999999999998865433 333333322 3554 788899999865321 12 222222222233
Q ss_pred CCceEEEEecCCC
Q 030120 150 NRQWAIFKTCAIK 162 (182)
Q Consensus 150 ~~~~~~~~~Sa~~ 162 (182)
....++++.|+..
T Consensus 157 ~~~i~~i~~sa~~ 169 (204)
T d2c78a3 157 GDEVPVIRGSALL 169 (204)
T ss_dssp TTTSCEEECCHHH
T ss_pred cccceeeeeechh
Confidence 4556789988754
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.86 E-value=1.1e-20 Score=127.65 Aligned_cols=149 Identities=21% Similarity=0.183 Sum_probs=101.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCC--ccc----------------------------------ccccccceeeEEE
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGE--VVS----------------------------------TIPTIGFNVETVQ 57 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~--~~~----------------------------------~~~t~~~~~~~~~ 57 (182)
.+..+|++++|+.++|||||+++|+... +.. ...+.......+.
T Consensus 6 ~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~ 85 (222)
T d1zunb3 6 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 85 (222)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEe
Confidence 4567899999999999999999996211 000 0112222333444
Q ss_pred ECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCC-CeEEEEEeCCCCCCCCCH
Q 030120 58 YNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKG-AVALIFANKQDLPGALDD 136 (182)
Q Consensus 58 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~~iivv~nK~D~~~~~~~ 136 (182)
..+..+.++|||||..+..........+|++++|+|+..+..-+ ..+.+. +... .+ ..+++++||+|+.+....
T Consensus 86 ~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Q-t~e~~~-~~~~---~gv~~iiv~vNK~D~~~~~~~ 160 (222)
T d1zunb3 86 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSY-IASL---LGIKHIVVAINKMDLNGFDER 160 (222)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHH-HHHH---TTCCEEEEEEECTTTTTSCHH
T ss_pred ccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccc-hHHHHH-HHHH---cCCCEEEEEEEccccccccce
Confidence 57789999999999999998888999999999999999885433 222222 2222 34 458999999999765322
Q ss_pred ------HHHHHHhCcccccCCceEEEEecCCCCCCHH
Q 030120 137 ------AAVSEALELHKIKNRQWAIFKTCAIKGEGLF 167 (182)
Q Consensus 137 ------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 167 (182)
.++...+.........++++++||++|.|+.
T Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~ 197 (222)
T d1zunb3 161 VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV 197 (222)
T ss_dssp HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred ehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence 1222222222333456789999999998873
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.85 E-value=2.9e-20 Score=128.54 Aligned_cols=112 Identities=23% Similarity=0.179 Sum_probs=86.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC--Ccc-----------------c--ccccccceeeEEEECCEEEEEEECCCCCCCc
Q 030120 17 EARILVLGLDNAGKTTILYRLQMG--EVV-----------------S--TIPTIGFNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~--~~~-----------------~--~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 75 (182)
-.+|+++|+.++|||||+.+++.. ... + ...|+......+.+++.++.++||||+..|.
T Consensus 6 iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~ 85 (276)
T d2bv3a2 6 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFT 85 (276)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCS
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhH
Confidence 347999999999999999999621 100 0 1224556667788899999999999999999
Q ss_pred cchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 76 PYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
......++-+|++++|+|+.++-..+. ...|..... .+.|.++++||.|....
T Consensus 86 ~e~~~~l~~~D~avlVvda~~Gv~~~T-~~~w~~a~~----~~lP~i~fINKmDr~~a 138 (276)
T d2bv3a2 86 IEVERSMRVLDGAIVVFDSSQGVEPQS-ETVWRQAEK----YKVPRIAFANKMDKTGA 138 (276)
T ss_dssp TTHHHHHHHCCEEEEEEETTTSSCHHH-HHHHHHHHT----TTCCEEEEEECTTSTTC
T ss_pred HHHHHHHHhhhheEEeccccCCcchhH-HHHHHHHHH----cCCCEEEEEeccccccc
Confidence 999999999999999999998854333 334444433 47999999999998653
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.83 E-value=1.2e-19 Score=125.22 Aligned_cols=108 Identities=16% Similarity=0.184 Sum_probs=83.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC--c------cc-------------ccccccceeeEEEECCEEEEEEECCCCCCCccc
Q 030120 19 RILVLGLDNAGKTTILYRLQMGE--V------VS-------------TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY 77 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~--~------~~-------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 77 (182)
+|+++|+.++|||||+.+++... . .. ...|+......+.+++.++.++||||+..|...
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~e 83 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGE 83 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhhh
Confidence 69999999999999999995211 0 00 112445566778889999999999999999999
Q ss_pred hhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q 030120 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLP 131 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 131 (182)
....++-+|++++|+|+.++-..+... .+..... .++|.++++||+|..
T Consensus 84 ~~~al~~~D~avlvvda~~Gv~~~t~~-~~~~~~~----~~~p~~i~iNk~D~~ 132 (267)
T d2dy1a2 84 IRGALEAADAALVAVSAEAGVQVGTER-AWTVAER----LGLPRMVVVTKLDKG 132 (267)
T ss_dssp HHHHHHHCSEEEEEEETTTCSCHHHHH-HHHHHHH----TTCCEEEEEECGGGC
T ss_pred hhhhhcccCceEEEeeccCCccchhHH-HHHhhhh----ccccccccccccccc
Confidence 999999999999999999885433333 3333322 478999999999974
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=2.7e-20 Score=122.87 Aligned_cols=164 Identities=12% Similarity=0.031 Sum_probs=92.8
Q ss_pred hhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcccc---cccccce-eeEEEECCEEEEEEECCCCC-CCccc------
Q 030120 9 FSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVST---IPTIGFN-VETVQYNNIKFQVWDLGGQT-SIRPY------ 77 (182)
Q Consensus 9 ~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~---~~t~~~~-~~~~~~~~~~~~~~D~~g~~-~~~~~------ 77 (182)
+++.+.++.++|+++|.+|+|||||+|++.+.+.... .++.... .......+......+.++.. .....
T Consensus 8 ~~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (188)
T d1puia_ 8 IRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQR 87 (188)
T ss_dssp GGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHH
T ss_pred hhHCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhh
Confidence 4667788899999999999999999999998875441 1222222 22222344444444444321 11110
Q ss_pred ----hhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCc-ccccCCc
Q 030120 78 ----WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALEL-HKIKNRQ 152 (182)
Q Consensus 78 ----~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~ 152 (182)
..........++.+.+....... ....++..... ...++++++||+|+.+........+.+.. .......
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~ 162 (188)
T d1puia_ 88 ALGEYLEKRQSLQGLVVLMDIRHPLKD-LDQQMIEWAVD----SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGD 162 (188)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHH----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSC
T ss_pred hhhhhhhhhhheeEEEEeecccccchh-HHHHHHHHhhh----ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCC
Confidence 11223344566666666655332 22223333322 36789999999998754333332222221 1122345
Q ss_pred eEEEEecCCCCCCHHHHHHHHHHHH
Q 030120 153 WAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 153 ~~~~~~Sa~~~~~v~~l~~~i~~~~ 177 (182)
.+++++||++|.|+++|++.|.+.+
T Consensus 163 ~~~i~vSA~~g~Gid~L~~~i~~~~ 187 (188)
T d1puia_ 163 VQVETFSSLKKQGVDKLRQKLDTWF 187 (188)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CcEEEEeCCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999987754
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.82 E-value=1.5e-20 Score=127.49 Aligned_cols=164 Identities=16% Similarity=0.177 Sum_probs=104.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC--cc------------------------------c--ccccccceeeEEEECCE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE--VV------------------------------S--TIPTIGFNVETVQYNNI 61 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~--~~------------------------------~--~~~t~~~~~~~~~~~~~ 61 (182)
..++|+++|+.++|||||+.+|+... .. + ...+.......+++++.
T Consensus 2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~ 81 (224)
T d1jnya3 2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 81 (224)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCc
Confidence 36899999999999999999995210 00 0 11133333445566788
Q ss_pred EEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccH------HHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC
Q 030120 62 KFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRI------QTAKEEFHAILEEEELKGAVALIFANKQDLPGALD 135 (182)
Q Consensus 62 ~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~ 135 (182)
.+.++|||||..|.........-+|++++|+|+.++... ....+.+... ... ...++++++||+|+.....
T Consensus 82 ~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~-~~~--~~~~iIv~iNK~D~~~~~~ 158 (224)
T d1jnya3 82 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILA-KTM--GLDQLIVAVNKMDLTEPPY 158 (224)
T ss_dssp EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHH-HHT--TCTTCEEEEECGGGSSSTT
T ss_pred eeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHH-HHh--CCCceEEEEEcccCCCccc
Confidence 999999999999999999999999999999999987321 1122221111 111 2346899999999864322
Q ss_pred H----HHH----HHHhCcccccCCceEEEEecCCCCCCHHH-----------HHHHHHHHHhcCCC
Q 030120 136 D----AAV----SEALELHKIKNRQWAIFKTCAIKGEGLFE-----------GMDWLSNTLKSGGS 182 (182)
Q Consensus 136 ~----~~~----~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~-----------l~~~i~~~~~~~~~ 182 (182)
. +.+ ..............+++++||..|.|+-+ ++..+++.++.++|
T Consensus 159 ~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~~s~~~~wy~~~~L~~~Ld~i~~P~~ 224 (224)
T d1jnya3 159 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQLELPPK 224 (224)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSSCTTCCSCCHHHHHTTCCCCCC
T ss_pred cHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCcccccccCCCcccccHHHHHhcCCCcCC
Confidence 2 111 11222222334567899999999988743 35555566655543
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.82 E-value=2.3e-20 Score=125.46 Aligned_cols=120 Identities=26% Similarity=0.311 Sum_probs=86.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhh----cCCCCeEEEE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCY----FPNTEAVIYV 91 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~----~~~~d~ii~v 91 (182)
+..+|+++|++|||||||+|+|.++.+.+. .|.......+...+..+.+||+||++.....+..+ ...++.++++
T Consensus 2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~~-tt~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~ 80 (209)
T d1nrjb_ 2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFM 80 (209)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCB-CCCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCe-EEecceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccccceE
Confidence 456899999999999999999999876542 22333444455577889999999998776555443 4556889999
Q ss_pred EeCCC-cccHHHHHHHHHHHH---hccccCCCeEEEEEeCCCCCCCCCH
Q 030120 92 VDSSD-TDRIQTAKEEFHAIL---EEEELKGAVALIFANKQDLPGALDD 136 (182)
Q Consensus 92 ~d~~~-~~s~~~~~~~~~~~~---~~~~~~~~~iivv~nK~D~~~~~~~ 136 (182)
+|+.+ ..++.....|+.... ......+.|+++++||+|+......
T Consensus 81 vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~ 129 (209)
T d1nrjb_ 81 VDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP 129 (209)
T ss_dssp EETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred EEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccCcH
Confidence 99764 455666666654432 2333357899999999999765443
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.81 E-value=6.7e-20 Score=124.98 Aligned_cols=147 Identities=14% Similarity=0.116 Sum_probs=101.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc---C-------------------Cc------------ccccccccceeeEEEECCE
Q 030120 16 KEARILVLGLDNAGKTTILYRLQM---G-------------------EV------------VSTIPTIGFNVETVQYNNI 61 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~---~-------------------~~------------~~~~~t~~~~~~~~~~~~~ 61 (182)
..++|+++|+.++|||||+.+|+. . .+ ....-|+......+.+.+.
T Consensus 5 ~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~ 84 (239)
T d1f60a3 5 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 84 (239)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred CccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCCE
Confidence 458999999999999999999952 1 00 0022355566777888999
Q ss_pred EEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccH------HHHHHHHHHHHhccccCCC-eEEEEEeCCCCCCCC
Q 030120 62 KFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRI------QTAKEEFHAILEEEELKGA-VALIFANKQDLPGAL 134 (182)
Q Consensus 62 ~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~~-~iivv~nK~D~~~~~ 134 (182)
++.++|||||..|...+......+|++++|+|+..+.-. .+..+.+... .. .++ ++|+++||+|+.+..
T Consensus 85 ~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~-~~---~gv~~iiv~iNKmD~~~~d 160 (239)
T d1f60a3 85 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA-FT---LGVRQLIVAVNKMDSVKWD 160 (239)
T ss_dssp EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-HH---TTCCEEEEEEECGGGGTTC
T ss_pred EEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHH-HH---cCCCeEEEEEECCCCCCCC
Confidence 999999999999999999999999999999999865210 1233322222 22 244 588999999987643
Q ss_pred CH------HHHHHHhCcccccCCceEEEEecCCCCCCH
Q 030120 135 DD------AAVSEALELHKIKNRQWAIFKTCAIKGEGL 166 (182)
Q Consensus 135 ~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 166 (182)
.. .++...+.........++++++|+.+|.|+
T Consensus 161 ~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni 198 (239)
T d1f60a3 161 ESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNM 198 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCcc
Confidence 22 122222222222334567899999999775
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.80 E-value=1.1e-19 Score=124.43 Aligned_cols=160 Identities=13% Similarity=0.162 Sum_probs=91.3
Q ss_pred HhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCC--cc------------------------------c--cccccccee
Q 030120 8 MFSSLFGNKEARILVLGLDNAGKTTILYRLQMGE--VV------------------------------S--TIPTIGFNV 53 (182)
Q Consensus 8 ~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~--~~------------------------------~--~~~t~~~~~ 53 (182)
.++..+.+..++|+++|+.++|||||+.+|+... +. + ...+.....
T Consensus 15 ~~~~~~~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~ 94 (245)
T d1r5ba3 15 LLKDMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGR 94 (245)
T ss_dssp THHHHSCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------C
T ss_pred HHHHhcCCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccc
Confidence 3445556778899999999999999999994211 00 0 111222333
Q ss_pred eEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccH------HHHHHHHHHHHhccccCCCeEEEEEeC
Q 030120 54 ETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRI------QTAKEEFHAILEEEELKGAVALIFANK 127 (182)
Q Consensus 54 ~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~~~iivv~nK 127 (182)
..+.+....+.++|||||..+..........+|++++|+|+.++.-. .+..+.+... ... .-.++++++||
T Consensus 95 ~~~~~~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~-~~~--~i~~iiv~iNK 171 (245)
T d1r5ba3 95 AYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLA-RTQ--GINHLVVVINK 171 (245)
T ss_dssp CEEECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH-HHT--TCSSEEEEEEC
T ss_pred cccccccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHH-HHc--CCCeEEEEEEc
Confidence 44555778999999999999999999999999999999999876211 0222222222 221 12358899999
Q ss_pred CCCCCCCC-H---HHHHHHhCccc------ccCCceEEEEecCCCCCCHHHHH
Q 030120 128 QDLPGALD-D---AAVSEALELHK------IKNRQWAIFKTCAIKGEGLFEGM 170 (182)
Q Consensus 128 ~D~~~~~~-~---~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~~v~~l~ 170 (182)
+|+..... . +++.+.+.... .....++++++||++|.|+.+++
T Consensus 172 mD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~ 224 (245)
T d1r5ba3 172 MDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 224 (245)
T ss_dssp TTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CCCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence 99964322 2 22222221110 01235789999999999997654
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.71 E-value=2.6e-17 Score=120.14 Aligned_cols=159 Identities=16% Similarity=0.061 Sum_probs=93.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cc-----ccccceeeEEEE-CCEEEEEEECCCCCCCccch-----hhhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS-TI-----PTIGFNVETVQY-NNIKFQVWDLGGQTSIRPYW-----RCYF 82 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~-~~-----~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~-----~~~~ 82 (182)
...++|+|+|.+|+|||||+|+|.|..... .. ..+......+.. ....+.+|||||........ ...+
T Consensus 54 ~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~~~~ 133 (400)
T d1tq4a_ 54 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF 133 (400)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCCCeEEEEeCCCcccccccHHHHHHHhhh
Confidence 357899999999999999999999865322 11 111112222333 44568899999965433222 2234
Q ss_pred CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC---------CCCHHHHHHHhC----c--cc
Q 030120 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG---------ALDDAAVSEALE----L--HK 147 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~---------~~~~~~~~~~~~----~--~~ 147 (182)
..+|.++++.|..-. ......+..+ .. .++|+++|.||+|... ....+...+.+. . ..
T Consensus 134 ~~~d~~l~~~~~~~~---~~d~~l~~~l-~~---~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~ 206 (400)
T d1tq4a_ 134 YEYDFFIIISATRFK---KNDIDIAKAI-SM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE 206 (400)
T ss_dssp GGCSEEEEEESSCCC---HHHHHHHHHH-HH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred hcceEEEEecCCCCC---HHHHHHHHHH-HH---cCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHH
Confidence 567888888775422 1112222222 22 4789999999999521 011112211111 1 11
Q ss_pred ccCCceEEEEecCCC--CCCHHHHHHHHHHHHhcC
Q 030120 148 IKNRQWAIFKTCAIK--GEGLFEGMDWLSNTLKSG 180 (182)
Q Consensus 148 ~~~~~~~~~~~Sa~~--~~~v~~l~~~i~~~~~~~ 180 (182)
......++|.+|+.+ .+++.++.+.+.+.+++.
T Consensus 207 ~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~ 241 (400)
T d1tq4a_ 207 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 241 (400)
T ss_dssp TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred cCCCCCCEEEecCCcccccCHHHHHHHHHHHhHHH
Confidence 122344688888765 458999999999888764
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=1.2e-16 Score=113.32 Aligned_cols=152 Identities=19% Similarity=0.164 Sum_probs=89.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhc------CCcc--cccccccceeeE-----EEE----------------------
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQM------GEVV--STIPTIGFNVET-----VQY---------------------- 58 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~------~~~~--~~~~t~~~~~~~-----~~~---------------------- 58 (182)
..+.++|+|.|+||+|||||+++|.. ..+. ...|+....-.. +..
T Consensus 51 ~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg 130 (327)
T d2p67a1 51 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG 130 (327)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred cCCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhccccccccccccccccccc
Confidence 46799999999999999999999962 2221 122222111100 000
Q ss_pred --------------CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEE
Q 030120 59 --------------NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIF 124 (182)
Q Consensus 59 --------------~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv 124 (182)
.+.++.+++|.|..... ..+...+|.+++|.++..++..+.....+.++ +-++|
T Consensus 131 ~~~~~~~~~~~~~~~g~d~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~---------aDi~V 198 (327)
T d2p67a1 131 ASQRARELMLLCEAAGYDVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKKGLMEV---------ADLIV 198 (327)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCHHHHHH---------CSEEE
T ss_pred chhhhhHHHHHHHhcCCCeEEEeeccccccc---hhhhhccceEEEEecCCCchhhhhhchhhhcc---------ccEEE
Confidence 13466777777654332 23456789999999988776555444444333 23899
Q ss_pred EeCCCCCCCCCHHH----HHHHhCc--ccccCCceEEEEecCCCCCCHHHHHHHHHHHH
Q 030120 125 ANKQDLPGALDDAA----VSEALEL--HKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 125 ~nK~D~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 177 (182)
+||+|+........ ....... ........+++.|||++|.|++++++.|.+..
T Consensus 199 vNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~ 257 (327)
T d2p67a1 199 INKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK 257 (327)
T ss_dssp ECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred EEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHH
Confidence 99999864322111 1111111 11234456899999999999999999998754
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.64 E-value=2e-15 Score=104.02 Aligned_cols=117 Identities=12% Similarity=0.075 Sum_probs=77.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccc----ccccccceeeEEEECCEEEEEEECCCCCCCccc-------hhh--
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMGEVVS----TIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPY-------WRC-- 80 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------~~~-- 80 (182)
....++|+++|.+|+|||||+|+++++.... ...|...........+..+.++||||....... ...
T Consensus 29 ~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~ 108 (257)
T d1h65a_ 29 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 108 (257)
T ss_dssp TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHHH
Confidence 3678999999999999999999999987543 222444556666778999999999995322111 111
Q ss_pred hcCCCCeEEEEEeCCCcc-c--HHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030120 81 YFPNTEAVIYVVDSSDTD-R--IQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~-s--~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
.....|++++|++++... + .......+...+... --.++++|+||+|...
T Consensus 109 ~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~--~~~~~ivv~t~~D~~~ 161 (257)
T d1h65a_ 109 LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKG--IWNKAIVALTHAQFSP 161 (257)
T ss_dssp TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECCSCCC
T ss_pred hcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchh--hhhCEEEEEECcccCC
Confidence 123568999999987542 1 122223333333211 1257899999999865
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.61 E-value=4.1e-15 Score=105.57 Aligned_cols=118 Identities=18% Similarity=0.191 Sum_probs=82.1
Q ss_pred HHHHhhhhcCCCcc-EEEEEcCCCCCHHHHHHHHhc--CCccc-----------------ccccccceeeEEEE------
Q 030120 5 FSRMFSSLFGNKEA-RILVLGLDNAGKTTILYRLQM--GEVVS-----------------TIPTIGFNVETVQY------ 58 (182)
Q Consensus 5 ~~~~~~~~~~~~~~-~v~i~G~~~~GKssl~~~l~~--~~~~~-----------------~~~t~~~~~~~~~~------ 58 (182)
++.+++. ...+ +|+|+|+.++|||||+.+|+. +.... ..-|+......+.+
T Consensus 7 ~~~lm~~---~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~ 83 (341)
T d1n0ua2 7 MRSLMDK---VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDED 83 (341)
T ss_dssp HHHHHHC---GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHH
T ss_pred HHHHhcC---cccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCccc
Confidence 4445552 3345 699999999999999999962 11100 01122222222322
Q ss_pred ----------CCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCC
Q 030120 59 ----------NNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQ 128 (182)
Q Consensus 59 ----------~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~ 128 (182)
+...+.++|||||..+.......++-+|++++|+|+.++-..+... .+..... .+.|+++++||+
T Consensus 84 ~~~~~~~~~~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~-~~~~a~~----~~~p~i~viNKi 158 (341)
T d1n0ua2 84 VKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTET-VLRQALG----ERIKPVVVINKV 158 (341)
T ss_dssp HHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHH-HHHHHHH----TTCEEEEEEECH
T ss_pred ccchhccccccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHH-HHHHHHH----cCCCeEEEEECc
Confidence 2456899999999999999999999999999999999986543333 3333333 479999999999
Q ss_pred CC
Q 030120 129 DL 130 (182)
Q Consensus 129 D~ 130 (182)
|.
T Consensus 159 Dr 160 (341)
T d1n0ua2 159 DR 160 (341)
T ss_dssp HH
T ss_pred cc
Confidence 97
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.60 E-value=5.2e-16 Score=106.12 Aligned_cols=118 Identities=14% Similarity=0.024 Sum_probs=69.2
Q ss_pred CEEEEEEECCCCCCCccchhh---h--cCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC
Q 030120 60 NIKFQVWDLGGQTSIRPYWRC---Y--FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGAL 134 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~---~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 134 (182)
...+.++|+||+......... . ....+.+++++|+......................-..|.++++||+|+....
T Consensus 94 ~~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~D~~~~~ 173 (244)
T d1yrba1 94 ENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 173 (244)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred ccceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeeccccccHH
Confidence 346899999998754332211 1 23457899999987543322222111111111111367899999999997542
Q ss_pred CHHHHHHHh----------Cc---------------ccccCCceEEEEecCCCCCCHHHHHHHHHHHH
Q 030120 135 DDAAVSEAL----------EL---------------HKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 177 (182)
Q Consensus 135 ~~~~~~~~~----------~~---------------~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 177 (182)
......... .. ........+++++||++|+|++++++.|.+.+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~ 241 (244)
T d1yrba1 174 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY 241 (244)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 221111100 00 00012456799999999999999999998864
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=99.59 E-value=1.2e-14 Score=102.81 Aligned_cols=153 Identities=16% Similarity=0.157 Sum_probs=93.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC------Cc--cccccccc-----------------ceeeEE------------
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMG------EV--VSTIPTIG-----------------FNVETV------------ 56 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~------~~--~~~~~t~~-----------------~~~~~~------------ 56 (182)
..+.++|+|.|+||+|||||++++... ++ ....|+.. .....+
T Consensus 48 ~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg 127 (323)
T d2qm8a1 48 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGG 127 (323)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHH
T ss_pred cCCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccc
Confidence 467899999999999999999999632 10 00111100 000000
Q ss_pred ------------EECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEE
Q 030120 57 ------------QYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIF 124 (182)
Q Consensus 57 ------------~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv 124 (182)
+..+.++.++.|.|.-...... ..-+|..++|..+..++..+....-+.+ .+-++|
T Consensus 128 ~~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~~---~~~~D~~v~v~~p~~GD~iQ~~k~gilE---------~aDi~v 195 (323)
T d2qm8a1 128 VAAKTRETMLLCEAAGFDVILVETVGVGQSETAV---ADLTDFFLVLMLPGAGDELQGIKKGIFE---------LADMIA 195 (323)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHH---HTTSSEEEEEECSCC------CCTTHHH---------HCSEEE
T ss_pred hhHHHHHHHHhhccCCCCeEEEeehhhhhhhhhh---hcccceEEEEeeccchhhhhhhhhhHhh---------hhheee
Confidence 0025788999999865544333 3458999999999988655443333222 234999
Q ss_pred EeCCCCCCCCCHH-HHH----HHhCcc--cccCCceEEEEecCCCCCCHHHHHHHHHHHHh
Q 030120 125 ANKQDLPGALDDA-AVS----EALELH--KIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 125 ~nK~D~~~~~~~~-~~~----~~~~~~--~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
+||+|+.+..... ... ..+... .......+++.+||++|.|+++++++|.+...
T Consensus 196 vNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~ 256 (323)
T d2qm8a1 196 VNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 256 (323)
T ss_dssp EECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred EeccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence 9999986543221 111 111111 12234567999999999999999999987643
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.27 E-value=7.5e-12 Score=88.56 Aligned_cols=79 Identities=27% Similarity=0.296 Sum_probs=46.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc-ccc--cccceeeEEE------------------------ECCEEEEEEECCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS-TIP--TIGFNVETVQ------------------------YNNIKFQVWDLGG 70 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~-~~~--t~~~~~~~~~------------------------~~~~~~~~~D~~g 70 (182)
.+|+++|.||||||||+|++.+.+... ..| |.+.+..... ....++.++|+||
T Consensus 1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG 80 (319)
T d1wxqa1 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (319)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence 479999999999999999998766432 333 4333333221 1225799999999
Q ss_pred CC-------CCccchhhhcCCCCeEEEEEeCCC
Q 030120 71 QT-------SIRPYWRCYFPNTEAVIYVVDSSD 96 (182)
Q Consensus 71 ~~-------~~~~~~~~~~~~~d~ii~v~d~~~ 96 (182)
.- .........++++|++++|+|+.+
T Consensus 81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~ 113 (319)
T d1wxqa1 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (319)
T ss_dssp --------------CCCSSTTCSEEEEEEETTC
T ss_pred cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence 42 223333445678999999999863
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.24 E-value=2.9e-11 Score=84.60 Aligned_cols=82 Identities=18% Similarity=0.261 Sum_probs=62.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCc--cc--ccccccceeeEEEEC-----------------CEEEEEEECCCC--
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEV--VS--TIPTIGFNVETVQYN-----------------NIKFQVWDLGGQ-- 71 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~--~~--~~~t~~~~~~~~~~~-----------------~~~~~~~D~~g~-- 71 (182)
...++++++|.||||||||+|++.+... .. ...|+.++...+.+. ...+.++|+||.
T Consensus 8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~ 87 (296)
T d1ni3a1 8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 87 (296)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence 4679999999999999999999997653 22 344666777766653 257899999982
Q ss_pred -----CCCccchhhhcCCCCeEEEEEeCCC
Q 030120 72 -----TSIRPYWRCYFPNTEAVIYVVDSSD 96 (182)
Q Consensus 72 -----~~~~~~~~~~~~~~d~ii~v~d~~~ 96 (182)
..........++++|+++.|+|+.+
T Consensus 88 gA~~g~GLGn~fL~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 88 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccccccccHHHHHHHhhccceeEEEEeccC
Confidence 2334456667899999999999854
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.23 E-value=2.2e-11 Score=85.38 Aligned_cols=114 Identities=17% Similarity=0.180 Sum_probs=71.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc--cccccc-ceeeEEE-----------------------------------
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIG-FNVETVQ----------------------------------- 57 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t~~-~~~~~~~----------------------------------- 57 (182)
.-.+|+|+|..++|||||+|+|++..+.+ ..+++. +..-.+.
T Consensus 25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (299)
T d2akab1 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhh
Confidence 34479999999999999999999988644 333332 1111100
Q ss_pred --------------E---CCEEEEEEECCCCCCC-------------ccchhhhcCCCC-eEEEEEeCCCcccHHHHHHH
Q 030120 58 --------------Y---NNIKFQVWDLGGQTSI-------------RPYWRCYFPNTE-AVIYVVDSSDTDRIQTAKEE 106 (182)
Q Consensus 58 --------------~---~~~~~~~~D~~g~~~~-------------~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~~~ 106 (182)
. ....+.++|+||.... ..+...|+...+ +++++.++....+......+
T Consensus 105 ~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~ 184 (299)
T d2akab1 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 184 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred CCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHH
Confidence 0 1235789999994321 123455666666 55667777766555444444
Q ss_pred HHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 107 FHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 107 ~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
...+ .. ...++++|+||+|..+.
T Consensus 185 ~~~~-~~---~~~r~i~Vltk~D~~~~ 207 (299)
T d2akab1 185 AKEV-DP---QGQRTIGVITKLDLMDE 207 (299)
T ss_dssp HHHH-CT---TCSSEEEEEECGGGSCT
T ss_pred HHHh-Cc---CCCceeeEEeccccccc
Confidence 4443 22 35689999999999654
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=99.22 E-value=1e-11 Score=86.21 Aligned_cols=79 Identities=22% Similarity=0.267 Sum_probs=57.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECC-----------------EEEEEEECCCCC----
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNN-----------------IKFQVWDLGGQT---- 72 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~---- 72 (182)
.++|++||-||||||||+|++.+..... ...|..++...+.+.+ ..+.++|.||.-
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~ 81 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence 4789999999999999999999776543 3345566777666532 368899999942
Q ss_pred ---CCccchhhhcCCCCeEEEEEeCC
Q 030120 73 ---SIRPYWRCYFPNTEAVIYVVDSS 95 (182)
Q Consensus 73 ---~~~~~~~~~~~~~d~ii~v~d~~ 95 (182)
.+.......++++|+++.|+|+.
T Consensus 82 ~g~Glg~~FL~~ir~~d~LihVVr~f 107 (278)
T d1jala1 82 KGEGLGNKFLANIRETDAIGHVVRCF 107 (278)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred cCCCccHHHHHHHHhccceEEEeecc
Confidence 23334556678999999999873
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=99.15 E-value=1.1e-10 Score=81.93 Aligned_cols=112 Identities=18% Similarity=0.215 Sum_probs=66.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc--cccccc-ceeeE---------------------------------------
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS--TIPTIG-FNVET--------------------------------------- 55 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~--~~~t~~-~~~~~--------------------------------------- 55 (182)
.+|+|+|..++|||||+|+|+|.++.+ ..+++. +..-.
T Consensus 25 P~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 104 (306)
T d1jwyb_ 25 PQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIR 104 (306)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCccccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHHHHHH
Confidence 379999999999999999999988643 222221 00000
Q ss_pred ------------------EEE---CCEEEEEEECCCCCCC-------------ccchhhhcCCCCeEEEEE-eCCCcccH
Q 030120 56 ------------------VQY---NNIKFQVWDLGGQTSI-------------RPYWRCYFPNTEAVIYVV-DSSDTDRI 100 (182)
Q Consensus 56 ------------------~~~---~~~~~~~~D~~g~~~~-------------~~~~~~~~~~~d~ii~v~-d~~~~~s~ 100 (182)
+.. ....+.++||||.... ...+..|+..++.+++++ +.......
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~ 184 (306)
T d1jwyb_ 105 DTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLAN 184 (306)
T ss_dssp HCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTT
T ss_pred HHHHhcCCCCcccccceEEEecCCCCCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccc
Confidence 000 1246789999994321 234566778888766554 55444333
Q ss_pred HHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q 030120 101 QTAKEEFHAILEEEELKGAVALIFANKQDLPGA 133 (182)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 133 (182)
.....+...+. ....++++|+||+|..+.
T Consensus 185 ~~~~~~~~~~~----~~~~r~i~Vitk~D~~~~ 213 (306)
T d1jwyb_ 185 SDALQLAKEVD----PEGKRTIGVITKLDLMDK 213 (306)
T ss_dssp CSHHHHHHHHC----SSCSSEEEEEECTTSSCS
T ss_pred cHHHHHHHHhC----cCCCeEEEEEeccccccc
Confidence 33333333332 134689999999998644
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=99.10 E-value=3.2e-11 Score=83.39 Aligned_cols=60 Identities=25% Similarity=0.371 Sum_probs=40.5
Q ss_pred hhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccc--ccccceeeEEEECCEEEEEEECCCC
Q 030120 11 SLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTI--PTIGFNVETVQYNNIKFQVWDLGGQ 71 (182)
Q Consensus 11 ~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~D~~g~ 71 (182)
.......++++|+|.||||||||+|++.+++..... |.++.....+. .+.++.++||||-
T Consensus 106 ~~~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~-~~~~~~l~DTPGi 167 (273)
T d1puja_ 106 KGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVK-VGKELELLDTPGI 167 (273)
T ss_dssp TTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEE-ETTTEEEEECCCC
T ss_pred ccCCCCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEE-CCCCeEEecCCCc
Confidence 345568899999999999999999999998866533 33333333332 3456999999994
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.59 E-value=1.7e-08 Score=69.45 Aligned_cols=89 Identities=18% Similarity=0.153 Sum_probs=61.4
Q ss_pred hhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEE
Q 030120 78 WRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFK 157 (182)
Q Consensus 78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (182)
....++.+|+|++|+|+..+.+.. ...+..+++ ++|.++|+||+|+.+....+...+.+. ..+...+.
T Consensus 9 i~~~i~~~DvIl~V~DaR~P~ss~--~~~l~~~~~-----~Kp~IlVlNK~DLv~~~~~~~w~~~f~-----~~~~~~i~ 76 (273)
T d1puja_ 9 VTEKLKLIDIVYELVDARIPMSSR--NPMIEDILK-----NKPRIMLLNKADKADAAVTQQWKEHFE-----NQGIRSLS 76 (273)
T ss_dssp HHHHGGGCSEEEEEEETTSTTTTS--CHHHHHHCS-----SSCEEEEEECGGGSCHHHHHHHHHHHH-----TTTCCEEE
T ss_pred HHHHHHhCCEEEEEEECCCCCCCC--CHHHHHHHc-----CCCeEEEEECccCCchHHHHHHHHHHH-----hcCCccce
Confidence 455788999999999999885432 223344432 579999999999976533333333332 23456899
Q ss_pred ecCCCCCCHHHHHHHHHHHHh
Q 030120 158 TCAIKGEGLFEGMDWLSNTLK 178 (182)
Q Consensus 158 ~Sa~~~~~v~~l~~~i~~~~~ 178 (182)
+|+.++.+..++.+.+.+.+.
T Consensus 77 isa~~~~~~~~~~~~~~~~l~ 97 (273)
T d1puja_ 77 INSVNGQGLNQIVPASKEILQ 97 (273)
T ss_dssp CCTTTCTTGGGHHHHHHHHHH
T ss_pred eecccCCCccccchhhhhhhh
Confidence 999999998887777665543
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.54 E-value=1.2e-07 Score=62.74 Aligned_cols=87 Identities=24% Similarity=0.214 Sum_probs=57.9
Q ss_pred hcCCCCeEEEEEeCCCcc-cHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEec
Q 030120 81 YFPNTEAVIYVVDSSDTD-RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTC 159 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
...+.|.+++|+++.+|+ +......++..... .+++.++|+||+|+.+....+.+...... -....+++.+|
T Consensus 7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~~~~~~~~~~---~~~~~~v~~vS 79 (225)
T d1u0la2 7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDLRKVRELEEI---YSGLYPIVKTS 79 (225)
T ss_dssp TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHH---HTTTSCEEECC
T ss_pred CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----cCCCEEEEEeCcccCCHHHHHHHHHhhcc---cccceeEEEec
Confidence 457889999999998764 33444444433322 47899999999999754322222222221 12235689999
Q ss_pred CCCCCCHHHHHHHHH
Q 030120 160 AIKGEGLFEGMDWLS 174 (182)
Q Consensus 160 a~~~~~v~~l~~~i~ 174 (182)
++++.|++++.+.+.
T Consensus 80 a~~~~g~~~L~~~l~ 94 (225)
T d1u0la2 80 AKTGMGIEELKEYLK 94 (225)
T ss_dssp TTTCTTHHHHHHHHS
T ss_pred cccchhHhhHHHHhc
Confidence 999999999887763
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.53 E-value=5.9e-08 Score=64.28 Aligned_cols=58 Identities=16% Similarity=0.192 Sum_probs=35.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc---ccc------cccceeeEEEECCEEEEEEECCCCCCCc
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVS---TIP------TIGFNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~------t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 75 (182)
.-..+++|++|+|||||+|+|.++.... ... -++....-+.... ...++||||...+.
T Consensus 95 ~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~-gg~iiDTPG~r~~~ 161 (225)
T d1u0la2 95 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDF-GGYVVDTPGFANLE 161 (225)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTT-SCEEESSCSSTTCC
T ss_pred CCeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECC-CcEEEeCCcccccc
Confidence 3467899999999999999998764322 111 1112222233322 35789999965554
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.42 E-value=6.5e-08 Score=64.27 Aligned_cols=55 Identities=20% Similarity=0.187 Sum_probs=32.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCCccc---c-------cccccceeeEEEECCEEEEEEECCCCCCCc
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGEVVS---T-------IPTIGFNVETVQYNNIKFQVWDLGGQTSIR 75 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~~~~---~-------~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 75 (182)
-..+++|++|+|||||+|+|.+..... . .+|+.. ..-+...+ -.++||||...+.
T Consensus 98 ~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~-~~l~~~~g--g~iiDTPG~r~~~ 162 (231)
T d1t9ha2 98 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRH-VELIHTSG--GLVADTPGFSSLE 162 (231)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-------------------CCC-CCEEEETT--EEEESSCSCSSCC
T ss_pred ceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeee-EEEEecCC--CEEEECCcccccc
Confidence 356799999999999999998764221 0 012221 12233343 3578999976654
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.39 E-value=8.2e-07 Score=58.99 Aligned_cols=21 Identities=38% Similarity=0.476 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030120 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~ 40 (182)
.+|.|.-|+|||||+++++..
T Consensus 6 ~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 6 TLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEESSSSSCHHHHHHHHHS
T ss_pred EEEeeCCCCCHHHHHHHHHhc
Confidence 578899999999999999864
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=98.26 E-value=1.3e-06 Score=57.18 Aligned_cols=66 Identities=14% Similarity=0.153 Sum_probs=38.4
Q ss_pred CEEEEEEECCCCCCCccch----hhh--------cCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeC
Q 030120 60 NIKFQVWDLGGQTSIRPYW----RCY--------FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANK 127 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~----~~~--------~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK 127 (182)
+.++.++||+|........ ..+ ....+-+++|+|++....-......+...+. +--+|+||
T Consensus 88 ~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~-------~~~lI~TK 160 (207)
T d1okkd2 88 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVG-------LTGVIVTK 160 (207)
T ss_dssp TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHC-------CSEEEEEC
T ss_pred CCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhccC-------CceEEEec
Confidence 5689999999966544321 111 1245788999999877432221111112211 22578999
Q ss_pred CCCCC
Q 030120 128 QDLPG 132 (182)
Q Consensus 128 ~D~~~ 132 (182)
.|...
T Consensus 161 lDet~ 165 (207)
T d1okkd2 161 LDGTA 165 (207)
T ss_dssp TTSSC
T ss_pred cCCCC
Confidence 99754
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=98.23 E-value=6.1e-07 Score=58.80 Aligned_cols=67 Identities=16% Similarity=0.099 Sum_probs=40.2
Q ss_pred CCEEEEEEECCCCCCCccchhh------hcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q 030120 59 NNIKFQVWDLGGQTSIRPYWRC------YFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDLPG 132 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~~~~~------~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 132 (182)
...++.++||+|.......... .....+-+++|.|+..++.-.. ....+.+... .-=+|+||.|-..
T Consensus 91 ~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~---~~~~f~~~~~----~~~~I~TKlDe~~ 163 (207)
T d1ls1a2 91 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALS---VARAFDEKVG----VTGLVLTKLDGDA 163 (207)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHH---HHHHHHHHTC----CCEEEEECGGGCS
T ss_pred ccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHH---HHHHHHhhCC----CCeeEEeecCccc
Confidence 3568999999996655433211 1235689999999987743222 2233322211 1248899999643
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.18 E-value=1.1e-07 Score=63.10 Aligned_cols=88 Identities=13% Similarity=0.140 Sum_probs=56.7
Q ss_pred hcCCCCeEEEEEeCCCcc-cHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHhCcccccCCceEEEEec
Q 030120 81 YFPNTEAVIYVVDSSDTD-RIQTAKEEFHAILEEEELKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTC 159 (182)
Q Consensus 81 ~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (182)
...+.|.+++|+++.+++ +......++..... .+++.++|+||+||.+....++....... .....+.+++.+|
T Consensus 7 ~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~~~~~~~~~~-~y~~~g~~v~~~S 81 (231)
T d1t9ha2 7 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA----NDIQPIICITKMDLIEDQDTEDTIQAYAE-DYRNIGYDVYLTS 81 (231)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT----TTCEEEEEEECGGGCCCHHHHHHHHHHHH-HHHHHTCCEEECC
T ss_pred CccccCEEEEEEECCCCCCCHHHHHHHHHHHHH----cCCCEEEEEecccccccHHHHHHHHHHHH-HHhhccccceeee
Confidence 457899999999998764 34444444433322 47899999999999765322222111111 1122345799999
Q ss_pred CCCCCCHHHHHHHH
Q 030120 160 AIKGEGLFEGMDWL 173 (182)
Q Consensus 160 a~~~~~v~~l~~~i 173 (182)
++++.|++++.+.+
T Consensus 82 a~~~~gl~~L~~~l 95 (231)
T d1t9ha2 82 SKDQDSLADIIPHF 95 (231)
T ss_dssp HHHHTTCTTTGGGG
T ss_pred cCChhHHHHHHHhh
Confidence 99999988876654
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=98.16 E-value=3.2e-06 Score=55.48 Aligned_cols=67 Identities=15% Similarity=0.093 Sum_probs=38.7
Q ss_pred CEEEEEEECCCCCCCccchh----h---hc-----CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeC
Q 030120 60 NIKFQVWDLGGQTSIRPYWR----C---YF-----PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANK 127 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~----~---~~-----~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK 127 (182)
+.++.++||+|......... . .. ...+-+++|+|+.... ....+..... ... .+-=+|+||
T Consensus 93 ~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~--~~~~~~~~~~-~~~----~~~~lI~TK 165 (213)
T d1vmaa2 93 NKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQAKIFK-EAV----NVTGIILTK 165 (213)
T ss_dssp TCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHHHHHHH-HHS----CCCEEEEEC
T ss_pred CCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCc--chhhhhhhhc-ccc----CCceEEEec
Confidence 56899999999655433211 1 11 1246789999998662 2333222222 221 234688999
Q ss_pred CCCCCC
Q 030120 128 QDLPGA 133 (182)
Q Consensus 128 ~D~~~~ 133 (182)
.|....
T Consensus 166 lDe~~~ 171 (213)
T d1vmaa2 166 LDGTAK 171 (213)
T ss_dssp GGGCSC
T ss_pred ccCCCc
Confidence 997543
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=98.15 E-value=2.2e-06 Score=56.22 Aligned_cols=67 Identities=13% Similarity=0.130 Sum_probs=37.7
Q ss_pred CCEEEEEEECCCCCCCcc--c----hhhh--cCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCC
Q 030120 59 NNIKFQVWDLGGQTSIRP--Y----WRCY--FPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDL 130 (182)
Q Consensus 59 ~~~~~~~~D~~g~~~~~~--~----~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~ 130 (182)
.+.++.++||+|...+.. . .... ....+-+++|++++..... .... ....... +. --+|+||.|.
T Consensus 93 ~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~--~~~~-~~~~~~~---~~-~~lI~TKlDe 165 (211)
T d1j8yf2 93 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKA--YDLA-SKFNQAS---KI-GTIIITKMDG 165 (211)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH--HHHH-HHHHHHC---TT-EEEEEECTTS
T ss_pred cCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcch--HHHH-hhhhccc---Cc-ceEEEecccC
Confidence 456899999999654331 1 1111 1235788999999876432 2221 1122221 22 2477999997
Q ss_pred CC
Q 030120 131 PG 132 (182)
Q Consensus 131 ~~ 132 (182)
..
T Consensus 166 t~ 167 (211)
T d1j8yf2 166 TA 167 (211)
T ss_dssp CS
T ss_pred CC
Confidence 53
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.09 E-value=9.3e-07 Score=56.39 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.||+|+|++|+|||||++.+.+.
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~~ 23 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHhc
Confidence 47999999999999999999764
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=98.07 E-value=2.7e-06 Score=55.70 Aligned_cols=67 Identities=16% Similarity=0.163 Sum_probs=38.4
Q ss_pred CEEEEEEECCCCCCCccch-------hhhcC-----CCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeC
Q 030120 60 NIKFQVWDLGGQTSIRPYW-------RCYFP-----NTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANK 127 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~-------~~~~~-----~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK 127 (182)
+.++.++||+|........ ....+ ..+-+++|+|+.... ....+. ....... .+--+|+||
T Consensus 91 ~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~--~~~~~~-~~~~~~~----~~~~lIlTK 163 (211)
T d2qy9a2 91 NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ--NAVSQA-KLFHEAV----GLTGITLTK 163 (211)
T ss_dssp TCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTH--HHHHHH-HHHHHHS----CCCEEEEEC
T ss_pred CCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCc--chHHHH-hhhhhcc----CCceEEEee
Confidence 4688999999964432211 11222 257899999998763 222222 2222221 234688999
Q ss_pred CCCCCC
Q 030120 128 QDLPGA 133 (182)
Q Consensus 128 ~D~~~~ 133 (182)
.|....
T Consensus 164 lDe~~~ 169 (211)
T d2qy9a2 164 LDGTAK 169 (211)
T ss_dssp CTTCTT
T ss_pred cCCCCC
Confidence 997543
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.96 E-value=2.9e-06 Score=53.74 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=23.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.++..+|++.|++||||||+.+.|..+
T Consensus 2 ~pk~~~I~i~G~~GsGKTT~~~~La~~ 28 (174)
T d1y63a_ 2 QPKGINILITGTPGTGKTSMAEMIAAE 28 (174)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 367889999999999999999999654
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.92 E-value=2.4e-06 Score=54.62 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
-+|+|.|++|+|||||++.|...
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~ 30 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAV 30 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999654
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.88 E-value=4.8e-06 Score=53.68 Aligned_cols=25 Identities=36% Similarity=0.396 Sum_probs=22.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
++.++|+++|+||+||||+...|..
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999864
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.83 E-value=5e-06 Score=52.34 Aligned_cols=21 Identities=29% Similarity=0.343 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030120 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
-++|+|.+|||||||++++..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999975
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.82 E-value=4.8e-06 Score=52.55 Aligned_cols=22 Identities=36% Similarity=0.427 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030120 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.+|+++|+|||||||+.+.|..
T Consensus 5 ~~I~i~G~pGsGKTTia~~La~ 26 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999954
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.75 E-value=3.6e-05 Score=52.54 Aligned_cols=59 Identities=17% Similarity=0.136 Sum_probs=40.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc------ccccccceeeEEEE---CCEEEEEEECCCCCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGEVVS------TIPTIGFNVETVQY---NNIKFQVWDLGGQTS 73 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~~~~------~~~t~~~~~~~~~~---~~~~~~~~D~~g~~~ 73 (182)
.+-.=|+|+|+.++|||+|+|.+++....- ...|.++-...... .+..+.++||.|...
T Consensus 30 ~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~ 97 (277)
T d1f5na2 30 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 97 (277)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccc
Confidence 455677899999999999999999866321 22344543333322 567899999999543
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=97.70 E-value=1.4e-05 Score=51.45 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=23.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
+.+-++|+++|+|||||||+...|..+
T Consensus 3 ~~r~mrIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 3 SARLLRAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp SSCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcceeEEEECCCCCCHHHHHHHHHHH
Confidence 456789999999999999999999754
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.69 E-value=1.1e-05 Score=49.76 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030120 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~ 40 (182)
|++.|+||+||||+++.+...
T Consensus 5 Iii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 678999999999999998643
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=97.68 E-value=1.2e-05 Score=51.78 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
+..+|++.|+||+||||+++.|..+
T Consensus 2 ~Pm~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 2 DPLKVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999988643
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.68 E-value=2.8e-05 Score=50.03 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=30.8
Q ss_pred hHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCc
Q 030120 4 MFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEV 42 (182)
Q Consensus 4 ~~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~ 42 (182)
.+.++.........-+++++|+||+|||+++..+..+-.
T Consensus 30 Ei~~l~~iL~r~~k~n~lLvG~pGVGKTalv~~LA~ri~ 68 (195)
T d1jbka_ 30 EIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp HHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCeEEEecCCcccHHHHHHHHHHHH
Confidence 355666666667778999999999999999999875443
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.64 E-value=1.7e-05 Score=50.56 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030120 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.+|+|+|+|||||||+.+.|..
T Consensus 1 m~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1zina1 1 MNLVLMGLPGAGKGTQAEKIVA 22 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998854
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.64 E-value=2.7e-05 Score=50.05 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=26.9
Q ss_pred hhHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHh
Q 030120 3 IMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 3 ~~~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~ 38 (182)
++++..++. .....+-|+|.|++|||||||.+.|.
T Consensus 9 ~~~~~~~~~-~~~~~~iIgI~G~~GSGKSTla~~L~ 43 (198)
T d1rz3a_ 9 FLCKTILAI-KTAGRLVLGIDGLSRSGKTTLANQLS 43 (198)
T ss_dssp HHHHHHHTS-CCSSSEEEEEEECTTSSHHHHHHHHH
T ss_pred HHHHHHHhc-cCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 345555443 34567789999999999999999985
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.63 E-value=3.2e-05 Score=52.40 Aligned_cols=40 Identities=25% Similarity=0.282 Sum_probs=31.7
Q ss_pred hHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCcc
Q 030120 4 MFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVV 43 (182)
Q Consensus 4 ~~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~ 43 (182)
.+.++.........-+++++|+||+|||++++.+..+-..
T Consensus 26 Ei~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~ri~~ 65 (268)
T d1r6bx2 26 ELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQ 65 (268)
T ss_dssp HHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccCCcEEECCCCCcHHHHHHHHHHHHHh
Confidence 3566666677677789999999999999999998755433
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.63 E-value=1.9e-05 Score=50.88 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=21.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.+...|+|+|+||+||||+++.|..
T Consensus 4 ~kp~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 4 SKPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4556789999999999999999964
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.61 E-value=1.7e-05 Score=49.84 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030120 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~ 40 (182)
|++.|++|+||||+.+.|...
T Consensus 5 I~i~G~~GsGKTTva~~L~~~ 25 (176)
T d2bdta1 5 YIITGPAGVGKSTTCKRLAAQ 25 (176)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999754
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.60 E-value=1.8e-05 Score=49.68 Aligned_cols=21 Identities=29% Similarity=0.465 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030120 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~ 40 (182)
++|+|.+|||||||++++...
T Consensus 4 i~I~G~~gSGKTTli~~l~~~ 24 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWVAA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 469999999999999999643
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.59 E-value=2.2e-05 Score=50.10 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.+|+++|+||+||||+.+.|...
T Consensus 1 m~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 1 MRVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998643
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=97.58 E-value=0.00029 Score=43.61 Aligned_cols=65 Identities=25% Similarity=0.242 Sum_probs=41.2
Q ss_pred HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc---ccccccceeeEEEECCEEEEEEECCC
Q 030120 5 FSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVS---TIPTIGFNVETVQYNNIKFQVWDLGG 70 (182)
Q Consensus 5 ~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g 70 (182)
+.+.+.....++..-|++-|+-|+|||||++.++..--.. .+||... ...+......+.-+|.=-
T Consensus 21 la~~l~~~~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPTF~l-~~~Y~~~~~~i~H~DlYR 88 (158)
T d1htwa_ 21 FAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTL-VEEYNIAGKMIYHFDLYR 88 (158)
T ss_dssp HHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTC-EEEEEETTEEEEEEECTT
T ss_pred HHHHHHhccCCCCeEEEEecCCCccHHHHHHHHHhhcccccccCCCceEE-EEeeccCCceEEEEEEec
Confidence 3344444444667778999999999999999997543222 4444443 233344566677777644
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.56 E-value=2.7e-05 Score=49.61 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
..+|+++|+||+||||+.+.|...
T Consensus 2 ~mrIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 2 SIRMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999999653
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=97.55 E-value=2.6e-05 Score=49.74 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.+|+++|+|||||||+.+.|...
T Consensus 1 M~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 1 MNIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998644
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.55 E-value=2.1e-05 Score=49.91 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030120 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
.|.|.|++|+|||||+..+..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~ 23 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 489999999999999999963
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=97.52 E-value=2.7e-05 Score=52.00 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
+.=+++|+|+.|+|||||++.+.+-.
T Consensus 28 ~Ge~vaIvG~sGsGKSTLl~ll~gl~ 53 (241)
T d2pmka1 28 QGEVIGIVGRSGSGKSTLTKLIQRFY 53 (241)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 44579999999999999999997643
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.52 E-value=2.5e-05 Score=48.54 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030120 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
+|.++|++|+||||+.+.|...
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~ 25 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQ 25 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998654
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.51 E-value=3e-05 Score=49.32 Aligned_cols=22 Identities=36% Similarity=0.372 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030120 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.+|+++|+|||||||+.+.|..
T Consensus 1 m~I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 1 MRIILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998853
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=97.45 E-value=4e-05 Score=51.24 Aligned_cols=27 Identities=26% Similarity=0.235 Sum_probs=22.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
++.=.++|+|+.|+|||||++.+.+-.
T Consensus 26 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 52 (242)
T d1mv5a_ 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (242)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 344589999999999999999997643
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.45 E-value=3.7e-05 Score=49.92 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.=.++++|+.|+|||||++.+.+-.
T Consensus 27 Gei~~l~G~NGsGKSTLl~~i~gl~ 51 (200)
T d1sgwa_ 27 GNVVNFHGPNGIGKTTLLKTISTYL 51 (200)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhccc
Confidence 3357899999999999999997753
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.43 E-value=4.1e-05 Score=50.70 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
+.=-++++|+.|||||||++.+.+-.
T Consensus 25 ~Gei~~liGpsGsGKSTLl~~i~Gl~ 50 (232)
T d2awna2 25 EGEFVVFVGPSGCGKSTLLRMIAGLE 50 (232)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 34468999999999999999997543
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.43 E-value=4e-05 Score=51.57 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
+.=.++|+|+.|+|||||++.+.+-.
T Consensus 40 ~Ge~iaivG~sGsGKSTLl~ll~gl~ 65 (253)
T d3b60a1 40 AGKTVALVGRSGSGKSTIASLITRFY 65 (253)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCCEEEEECCCCChHHHHHHHHhccc
Confidence 44479999999999999999997643
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.43 E-value=3.9e-05 Score=50.78 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
+.=.++++|+.|||||||++.+.+-
T Consensus 30 ~Ge~~~iiG~sGsGKSTLl~~i~gl 54 (230)
T d1l2ta_ 30 EGEFVSIMGPSGSGKSTMLNIIGCL 54 (230)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCcchhhHhccCC
Confidence 3446899999999999999988764
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.43 E-value=5.5e-05 Score=47.70 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=21.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.+.+-|.++|.+|+||||+.+.|..
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~ 28 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQV 28 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457788999999999999988854
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.42 E-value=4.3e-05 Score=49.68 Aligned_cols=43 Identities=12% Similarity=0.122 Sum_probs=28.3
Q ss_pred CCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCC
Q 030120 83 PNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDL 130 (182)
Q Consensus 83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~ 130 (182)
...++.++++|..++ ....+..+.++... ...+++++.++++.
T Consensus 82 ~~~~~~~vi~d~~~~--~~~~r~~~~~~~~~---~~~~~~~~~~~~~~ 124 (213)
T d1bifa1 82 SEEGGHVAVFDATNT--TRERRAMIFNFGEQ---NGYKTFFVESICVD 124 (213)
T ss_dssp HTTCCSEEEEESCCC--SHHHHHHHHHHHHH---HTCEEEEEEECCCC
T ss_pred HhcCCCEEEeecCCc--cHHHHHHHHHHHHh---cCCeEEEEEeeccH
Confidence 344566778899877 44555566665554 35678888888763
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.41 E-value=4.6e-05 Score=47.97 Aligned_cols=21 Identities=33% Similarity=0.359 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030120 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~ 40 (182)
|++.|++||||||+.+.+...
T Consensus 7 I~l~G~~GsGKSTia~~La~~ 27 (176)
T d1zp6a1 7 LLLSGHPGSGKSTIAEALANL 27 (176)
T ss_dssp EEEEECTTSCHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999654
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.41 E-value=4.2e-05 Score=48.59 Aligned_cols=20 Identities=25% Similarity=0.250 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030120 19 RILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~ 38 (182)
-|+|.|++||||||+++.|.
T Consensus 3 iI~i~G~~GsGKsT~~~~L~ 22 (190)
T d1khta_ 3 VVVVTGVPGVGSTTSSQLAM 22 (190)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999884
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.41 E-value=4.7e-05 Score=51.16 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=22.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
++.=.++|+|+.|+|||||++.+.+-.
T Consensus 38 ~~Ge~vaivG~sGsGKSTLl~li~gl~ 64 (251)
T d1jj7a_ 38 RPGEVTALVGPNGSGKSTVAALLQNLY 64 (251)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhccc
Confidence 344589999999999999999997643
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.39 E-value=6.6e-05 Score=47.49 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=22.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhc
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.++..=|+++|.|||||||++..+..
T Consensus 11 ~~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 11 SPNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp CSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35566788999999999999999854
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.39 E-value=4e-05 Score=48.06 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=18.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 030120 18 ARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~ 38 (182)
.+|+++|.+||||||+.+.+.
T Consensus 2 p~IvliG~~G~GKSTig~~La 22 (165)
T d2iyva1 2 PKAVLVGLPGSGKSTIGRRLA 22 (165)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 368899999999999988884
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.38 E-value=5.2e-05 Score=50.39 Aligned_cols=25 Identities=32% Similarity=0.336 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.=-++++|+.|+|||||++.+.+-.
T Consensus 32 Ge~~~liGpsGaGKSTLl~~i~Gl~ 56 (239)
T d1v43a3 32 GEFLVLLGPSGCGKTTTLRMIAGLE 56 (239)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3358999999999999999997754
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.37 E-value=6.7e-05 Score=48.33 Aligned_cols=27 Identities=33% Similarity=0.322 Sum_probs=22.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
+++.--|+++|+||+||||+...|...
T Consensus 5 ~~~~~iI~i~GppGSGKsT~a~~La~~ 31 (196)
T d1ukza_ 5 PDQVSVIFVLGGPGAGKGTQCEKLVKD 31 (196)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 345556889999999999999999654
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.37 E-value=5.5e-05 Score=50.28 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
-++++|+.|+|||||++.+.+-.
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl~ 48 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 46799999999999999998753
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.37 E-value=5.4e-05 Score=51.73 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
+.=.++|+|+.|+|||||++.+.+-.
T Consensus 61 ~Ge~vaivG~nGsGKSTLl~~i~Gl~ 86 (281)
T d1r0wa_ 61 KGEMLAITGSTGSGKTSLLMLILGEL 86 (281)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 44579999999999999999998754
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.37 E-value=6.2e-05 Score=48.37 Aligned_cols=22 Identities=36% Similarity=0.353 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030120 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~ 39 (182)
..|+|+|+|||||||....|..
T Consensus 2 ~iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 2 LVVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999998854
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=97.36 E-value=5e-05 Score=47.46 Aligned_cols=20 Identities=30% Similarity=0.549 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030120 19 RILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~ 38 (182)
+|+++|++||||||+.+.|.
T Consensus 2 ~I~liG~~GsGKsTi~k~La 21 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALA 21 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 58999999999999998884
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.36 E-value=0.0001 Score=49.36 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=21.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.....|++.|+||+|||++++.+.+
T Consensus 38 ~p~~~vLL~GppGtGKT~la~alA~ 62 (246)
T d1d2na_ 38 TPLVSVLLEGPPHSGKTALAAKIAE 62 (246)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHhh
Confidence 3456799999999999999999965
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.34 E-value=6.1e-05 Score=48.23 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 030120 20 ILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~~ 41 (182)
|+|+|++|+|||||++.|....
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999997653
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.33 E-value=6.3e-05 Score=47.93 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030120 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~ 40 (182)
|+++|++|+|||||++.|...
T Consensus 5 ivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 5 VVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 679999999999999999754
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=97.32 E-value=6.7e-05 Score=49.92 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
=.++++|+.|+|||||++.+.+-.
T Consensus 30 e~~~liG~sGaGKSTll~~i~gl~ 53 (240)
T d1g2912 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 368999999999999999997754
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.31 E-value=7.1e-05 Score=50.53 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
...-|++.|+||+|||||+..+.+.
T Consensus 31 ~P~~ilL~GpPGtGKT~la~~la~~ 55 (273)
T d1gvnb_ 31 SPTAFLLGGQPGSGKTSLRSAIFEE 55 (273)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3445889999999999999999654
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=97.31 E-value=6.4e-05 Score=50.13 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
-++++|+.|+|||||++.+.+-.
T Consensus 34 i~~liGpnGaGKSTl~~~i~Gl~ 56 (240)
T d1ji0a_ 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999998754
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=97.31 E-value=6.2e-05 Score=50.08 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
+.=-++++|+.|+|||||++.+.+-
T Consensus 30 ~Ge~~~iiG~sGsGKSTLl~~i~Gl 54 (240)
T d3dhwc1 30 AGQIYGVIGASGAGKSTLIRCVNLL 54 (240)
T ss_dssp SSCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 3346899999999999999999774
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.30 E-value=7e-05 Score=46.91 Aligned_cols=22 Identities=14% Similarity=0.384 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030120 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
=++++|++|+||||+.+.|...
T Consensus 8 iivl~G~~GsGKsT~a~~La~~ 29 (171)
T d1knqa_ 8 IYVLMGVSGSGKSAVASEVAHQ 29 (171)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999998643
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=97.29 E-value=4.5e-05 Score=50.40 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
=-++++|+.|+|||||++.+.+-.
T Consensus 27 e~~~liGpsGaGKSTll~~l~Gl~ 50 (229)
T d3d31a2 27 EYFVILGPTGAGKTLFLELIAGFH 50 (229)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCc
Confidence 358999999999999999998753
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=97.29 E-value=7.3e-05 Score=49.78 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.=-++++|+.|+|||||++.+.+-.
T Consensus 28 Gei~glvG~nGaGKSTLl~~l~G~~ 52 (238)
T d1vpla_ 28 GEIFGLIGPNGAGKTTTLRIISTLI 52 (238)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3357899999999999999998764
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.26 E-value=8.6e-05 Score=47.21 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 030120 20 ILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~~ 41 (182)
|+++||+|+||+||+++|....
T Consensus 6 ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 6 LVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999997543
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.25 E-value=8.9e-05 Score=46.54 Aligned_cols=21 Identities=38% Similarity=0.407 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030120 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~ 40 (182)
|++.|++|+||||+.+.|...
T Consensus 6 I~l~G~~GsGKsTva~~L~~~ 26 (178)
T d1qhxa_ 6 IILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 567799999999999999654
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=97.24 E-value=5.6e-05 Score=50.19 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
=-++++|+.|+|||||++.+.+-
T Consensus 26 ei~~iiG~nGaGKSTLl~~l~Gl 48 (231)
T d1l7vc_ 26 EILHLVGPNGAGKSTLLARMAGM 48 (231)
T ss_dssp CEEECBCCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 35789999999999999999874
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.23 E-value=0.00011 Score=48.12 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 030120 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
+.+.|+|-|+|||||||+...|..
T Consensus 2 k~i~IaIdGp~GsGKgT~ak~La~ 25 (223)
T d1q3ta_ 2 KTIQIAIDGPASSGKSTVAKIIAK 25 (223)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 357789999999999999999964
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.22 E-value=5.5e-05 Score=50.90 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=21.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
++.=+++|+|+.|+|||||++.+.+-
T Consensus 42 ~~Ge~vaivG~sGsGKSTLl~ll~gl 67 (255)
T d2hyda1 42 EKGETVAFVGMSGGGKSTLINLIPRF 67 (255)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHhc
Confidence 34458999999999999999988654
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.22 E-value=0.0001 Score=47.35 Aligned_cols=20 Identities=35% Similarity=0.564 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030120 20 ILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~ 39 (182)
|+|+||+|+|||||++.|..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~ 22 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQ 22 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999864
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.20 E-value=0.00011 Score=47.89 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030120 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~ 40 (182)
++++||+|+|||||++.|...
T Consensus 5 ivi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 5 YIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 679999999999999999754
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=97.20 E-value=0.0001 Score=49.64 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
+.=-++++|+.|+|||||++.+.+-.
T Consensus 27 ~GEi~~iiG~sGsGKSTLl~~i~Gl~ 52 (258)
T d1b0ua_ 27 AGDVISIIGSSGSGKSTFLRCINFLE 52 (258)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCc
Confidence 33468999999999999999997643
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=97.19 E-value=0.00011 Score=48.86 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.-.+++.||||+||||+++.+.+.
T Consensus 35 ~~~~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 35 LEHLLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999754
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=97.19 E-value=0.00012 Score=52.27 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=29.2
Q ss_pred hHHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 4 MFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 4 ~~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.+.++.........-++++||+||+|||++++.|..+
T Consensus 30 ei~~~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~~ 66 (387)
T d1qvra2 30 EIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQR 66 (387)
T ss_dssp HHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCeEECCCCCCHHHHHHHHHHH
Confidence 4556666666677778999999999999999877644
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.18 E-value=0.00011 Score=49.48 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030120 19 RILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
-++++|+.|+|||||++.+.+-.
T Consensus 32 i~~liG~nGaGKSTLl~~i~Gl~ 54 (254)
T d1g6ha_ 32 VTLIIGPNGSGKSTLINVITGFL 54 (254)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHHCCC
Confidence 47899999999999999998754
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=97.18 E-value=0.00012 Score=48.65 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
...+++.||||+||||+++.+...
T Consensus 35 ~~~~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 35 LDHVLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHhc
Confidence 346999999999999999998653
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=97.18 E-value=0.00018 Score=50.14 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
...+++|.|++|+|||||+++++..
T Consensus 165 ~~~nili~G~tgSGKTT~l~al~~~ 189 (323)
T d1g6oa_ 165 IGKNVIVCGGTGSGKTTYIKSIMEF 189 (323)
T ss_dssp HTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred hCCCEEEEeeccccchHHHHHHhhh
Confidence 3456999999999999999999864
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.17 E-value=0.00015 Score=47.80 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
+...+++.|++|+|||++++.+...
T Consensus 44 ~~~~lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 44 SMPHLLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3346999999999999999988654
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=97.16 E-value=0.00013 Score=45.90 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030120 19 RILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~ 38 (182)
.|+++|++|+||||+.+.+.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA 23 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELA 23 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 37889999999999999884
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.16 E-value=0.00014 Score=46.67 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.-|.++|+|||||||+...|...
T Consensus 9 ~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 9 KIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 34889999999999999999654
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=97.16 E-value=0.00021 Score=49.28 Aligned_cols=32 Identities=22% Similarity=0.117 Sum_probs=25.6
Q ss_pred HHhhhhcCCCccEEEEEcCCCCCHHHHHHHHh
Q 030120 7 RMFSSLFGNKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 7 ~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~ 38 (182)
.++........+=|+|.|++|||||||.+.|.
T Consensus 70 ~fl~~~~~k~P~iIGIaG~sgSGKSTla~~L~ 101 (308)
T d1sq5a_ 70 QFLGTNGQRIPYIISIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp HHHTCC-CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred HHhcccCCCCCEEEEEeCCCCCCCcHHHHHHH
Confidence 34555556778999999999999999988874
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.13 E-value=0.00027 Score=47.40 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=21.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
...-.+++.|++|+|||++++.+..
T Consensus 41 ~~~~~lll~GppGtGKT~l~~~l~~ 65 (276)
T d1fnna2 41 HHYPRATLLGRPGTGKTVTLRKLWE 65 (276)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHH
Confidence 4445799999999999999998864
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.12 E-value=0.00017 Score=47.04 Aligned_cols=22 Identities=23% Similarity=0.230 Sum_probs=19.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 030120 17 EARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~ 38 (182)
.+-|+|.|++|||||||.+.|.
T Consensus 2 P~iIgI~G~~gSGKSTla~~L~ 23 (213)
T d1uj2a_ 2 PFLIGVSGGTASGKSSVCAKIV 23 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999999884
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.11 E-value=6.9e-05 Score=47.99 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=20.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 030120 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
+...|.++|.|||||||+.+.|..
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~ 41 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEE 41 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 455788999999999999999954
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.10 E-value=6.5e-05 Score=50.01 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
+.=.++++|+.|+|||||++.+.+-.
T Consensus 30 ~Ge~~~iiG~sGsGKSTll~~i~gl~ 55 (242)
T d1oxxk2 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (242)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCc
Confidence 34478999999999999999998753
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=97.06 E-value=0.00016 Score=45.97 Aligned_cols=20 Identities=35% Similarity=0.758 Sum_probs=17.0
Q ss_pred EE-EEEcCCCCCHHHHHHHHh
Q 030120 19 RI-LVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 19 ~v-~i~G~~~~GKssl~~~l~ 38 (182)
|+ +|.|.+||||||+++.|.
T Consensus 2 kiivi~G~~GsGKTT~~~~La 22 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 44 467999999999999885
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=97.04 E-value=0.00035 Score=46.73 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.-.+++.|+||+|||++++.+.+.
T Consensus 42 ~~giLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 42 PKGVLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEecCCCCChhHHHHHHHHH
Confidence 346999999999999999999754
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=97.01 E-value=0.00018 Score=49.76 Aligned_cols=24 Identities=38% Similarity=0.452 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.-.++++||||+|||.|.+++...
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhhc
Confidence 356899999999999999999653
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.98 E-value=0.00036 Score=45.98 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
-.+++.|++|+||||+++.+...
T Consensus 34 ~~lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 34 PHMLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCChHHHHHHHHHH
Confidence 35899999999999999998754
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.96 E-value=0.00043 Score=46.54 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=21.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.....+++.|+||+|||++++.+...
T Consensus 36 ~~~~giLL~GppGtGKT~l~~ala~~ 61 (258)
T d1e32a2 36 KPPRGILLYGPPGTGKTLIARAVANE 61 (258)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCceeEEecCCCCCchHHHHHHHHH
Confidence 34456999999999999999999764
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.95 E-value=0.00033 Score=46.72 Aligned_cols=26 Identities=19% Similarity=0.074 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
..-.+++.||||+||||++..+.+..
T Consensus 51 ~~~~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 51 VFRAAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999997653
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.93 E-value=0.00044 Score=45.35 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=19.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030120 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.-.+++.|++|+||||+++.+..
T Consensus 36 ~~~~ll~Gp~G~GKTt~a~~la~ 58 (224)
T d1sxjb2 36 MPHMIISGMPGIGKTTSVHCLAH 58 (224)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCchhhHHHHHH
Confidence 34699999999999999988754
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.92 E-value=0.00032 Score=44.80 Aligned_cols=25 Identities=24% Similarity=0.149 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
+++-|+|.|.+||||||+++.|...
T Consensus 2 ~p~IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 2 HPIIIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 4567899999999999999988543
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.92 E-value=0.00047 Score=45.21 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030120 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
++++.|++|+||||++..+...
T Consensus 37 ~lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 37 HLLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHHH
Confidence 5899999999999999998753
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.88 E-value=0.00029 Score=45.17 Aligned_cols=27 Identities=30% Similarity=0.370 Sum_probs=23.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
..+.+-|+|-|..||||||+++.|...
T Consensus 6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~ 32 (197)
T d2vp4a1 6 GTQPFTVLIEGNIGSGKTTYLNHFEKY 32 (197)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 456678999999999999999998643
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=96.84 E-value=0.00059 Score=45.97 Aligned_cols=21 Identities=24% Similarity=0.061 Sum_probs=17.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030120 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~ 40 (182)
+.+.|+||+|||++++.+...
T Consensus 49 l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHHH
Confidence 345699999999999999754
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.82 E-value=0.00042 Score=46.57 Aligned_cols=23 Identities=35% Similarity=0.385 Sum_probs=19.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030120 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.-.++|.|++|+|||||++++..
T Consensus 29 ~~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 29 APITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Confidence 34678999999999999998863
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.82 E-value=0.0004 Score=46.66 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
...+++.|+||+|||++++.+...
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHHHHHHH
Confidence 446899999999999999999753
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.78 E-value=0.00041 Score=45.19 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030120 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
=|+|.|+|||||||+...|..+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~ 26 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEA 26 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4678899999999999999643
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.78 E-value=0.00056 Score=44.43 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=23.4
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhc
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.+.+..-|.+.|.||+|||||.+.|..
T Consensus 20 ~~~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 20 RNQRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred hCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 356778899999999999999999864
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.75 E-value=0.00064 Score=45.89 Aligned_cols=27 Identities=19% Similarity=0.210 Sum_probs=22.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
.....+++.|++|+|||+|++++.+.-
T Consensus 39 ~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 39 TPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcchhHHHHHHHHh
Confidence 345569999999999999999997653
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.62 E-value=0.00047 Score=45.85 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
-.+++.|++|+||||++..+...
T Consensus 34 ~~lll~Gp~G~GKTt~~~~la~~ 56 (252)
T d1sxje2 34 PHLLLYGPNGTGKKTRCMALLES 56 (252)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHh
Confidence 36999999999999999988653
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=96.58 E-value=0.022 Score=37.93 Aligned_cols=72 Identities=11% Similarity=0.122 Sum_probs=39.7
Q ss_pred CEEEEEEECCCCCCCcc-chhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCC
Q 030120 60 NIKFQVWDLGGQTSIRP-YWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAV-ALIFANKQDLPG 132 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~-~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~ 132 (182)
..++.++|||+.-.... ........+|.++++.+.. ..++.........+.......+.+ .-+++|+.+...
T Consensus 115 ~~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~~-~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~ 188 (269)
T d1cp2a_ 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN 188 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC
T ss_pred cCCEEEeccCCccchhHHHHHHHhhccCceeeccchh-hhHHHHHHHHHHHHHhhccccceeccceEEeeecCCC
Confidence 46899999997543322 2233345678888887764 334444333333332222222333 347889988754
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.57 E-value=0.00055 Score=49.66 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030120 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~ 39 (182)
-+|+++||+|+|||-|.++|..
T Consensus 50 sNILliGPTGvGKTlLAr~LAk 71 (443)
T d1g41a_ 50 KNILMIGPTGVGKTEIARRLAK 71 (443)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ccEEEECCCCCCHHHHHHHHHH
Confidence 3899999999999999999953
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=96.51 E-value=0.00095 Score=47.08 Aligned_cols=25 Identities=32% Similarity=0.256 Sum_probs=21.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
++.--+++.||||+|||+|..++.+
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~ 176 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLE 176 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcCeEEEECCCCCCHHHHHHHHHH
Confidence 4455789999999999999999854
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.49 E-value=0.0013 Score=44.81 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=21.2
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHh
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~ 38 (182)
..+.+=|+|.|.+|+|||||...+.
T Consensus 24 ~~~P~iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 24 NKCPLFIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEeECCCCCCHHHHHHHHH
Confidence 4567889999999999999987763
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.43 E-value=0.00092 Score=43.07 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030120 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
-|+|-|..||||||+++.|..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~ 22 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSG 22 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998853
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.41 E-value=0.0018 Score=43.85 Aligned_cols=26 Identities=15% Similarity=0.142 Sum_probs=21.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
....-|+|.|.+|+|||||+..+.+.
T Consensus 42 ~~~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 42 LDSFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHh
Confidence 34456789999999999999998654
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=96.37 E-value=0.0011 Score=42.99 Aligned_cols=23 Identities=17% Similarity=0.086 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
+-|+|+|..|+||||+.+.|...
T Consensus 4 ~iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 4 YIVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEEECCCcCCHHHHHHHHHHC
Confidence 45889999999999999988543
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.30 E-value=0.0013 Score=42.44 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=20.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
..--+.|.|+||+|||+|+..+...
T Consensus 22 ~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 22 TGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 3445688999999999999988653
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=96.25 E-value=0.002 Score=41.52 Aligned_cols=22 Identities=27% Similarity=0.116 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 030120 18 ARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~ 39 (182)
+-|+|.|..||||||+++.|..
T Consensus 3 ~iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999998853
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.20 E-value=0.002 Score=42.37 Aligned_cols=33 Identities=12% Similarity=0.154 Sum_probs=23.7
Q ss_pred HHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 7 RMFSSLFGNKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 7 ~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.++.-++ ++.--+.|.|+||+|||+|+..+...
T Consensus 25 ~ll~GGi-~~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 25 TLLGGGV-ETGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp HHHTSSE-ESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred hhhCCCC-cCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3444334 34456788999999999999988643
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=96.12 E-value=0.00081 Score=46.85 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 030120 18 ARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~ 38 (182)
-.+++.|+||+|||+|++++.
T Consensus 29 h~vLl~G~pG~GKT~lar~~~ 49 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALA 49 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHH
T ss_pred CeEEEECCCCccHHHHHHHHH
Confidence 479999999999999999885
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=96.10 E-value=0.002 Score=40.51 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
..=|++.|++|+||||+.-.+..+.
T Consensus 14 g~gvl~~G~sG~GKStlal~l~~~g 38 (176)
T d1kkma_ 14 GLGVLITGDSGVGKSETALELVQRG 38 (176)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHcC
Confidence 3458999999999999999987654
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.09 E-value=0.0011 Score=45.14 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=16.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 030120 16 KEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~ 38 (182)
+..=|+|.|.+||||||+.++|.
T Consensus 3 k~pIIgIaG~SGSGKTTva~~l~ 25 (288)
T d1a7ja_ 3 KHPIISVTGSSGAGTSTVKHTFD 25 (288)
T ss_dssp TSCEEEEESCC---CCTHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHH
Confidence 34459999999999999999874
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.07 E-value=0.0031 Score=40.76 Aligned_cols=35 Identities=20% Similarity=0.474 Sum_probs=24.2
Q ss_pred HHHHhhhhcCCCcc-EEEEEcCCCCCHHHHHHHHhc
Q 030120 5 FSRMFSSLFGNKEA-RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 5 ~~~~~~~~~~~~~~-~v~i~G~~~~GKssl~~~l~~ 39 (182)
+.++.+.....+-. -+++.|++|+|||+++..+..
T Consensus 11 ~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~ 46 (207)
T d1a5ta2 11 FEKLVASYQAGRGHHALLIQALPGMGDDALIYALSR 46 (207)
T ss_dssp HHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHH
Confidence 34444444333333 489999999999999997754
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.06 E-value=0.0019 Score=41.73 Aligned_cols=20 Identities=40% Similarity=0.486 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030120 19 RILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~ 38 (182)
=|++-|..||||||+++.|.
T Consensus 4 fIviEG~dGsGKsT~~~~L~ 23 (210)
T d4tmka_ 4 YIVIEGLEGAGKTTARNVVV 23 (210)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37888999999999999885
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=96.01 E-value=0.0023 Score=40.19 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
..=|++.|++|+||||+.-.+..+.
T Consensus 15 g~gvli~G~sG~GKS~lal~l~~~G 39 (177)
T d1knxa2 15 GVGVLLTGRSGIGKSECALDLINKN 39 (177)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHTTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHcC
Confidence 3458899999999999999987654
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.00 E-value=0.002 Score=42.58 Aligned_cols=25 Identities=28% Similarity=0.242 Sum_probs=20.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
..--++|.|+||+|||+|.-.+...
T Consensus 35 ~G~~~li~G~pGsGKT~~~lq~~~~ 59 (254)
T d1pzna2 35 TQAITEVFGEFGSGKTQLAHTLAVM 59 (254)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 3445688999999999999888643
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=95.96 E-value=0.0022 Score=44.25 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=17.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030120 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~ 40 (182)
+++.|+||+|||.|.+.+.+.
T Consensus 126 ~l~~G~pG~GKT~la~ala~~ 146 (321)
T d1w44a_ 126 VIVTGKGNSGKTPLVHALGEA 146 (321)
T ss_dssp EEEECSSSSCHHHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHHH
Confidence 455799999999999999653
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=95.92 E-value=0.0024 Score=40.93 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=21.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
++.--+++.|++++|||.|+.++..
T Consensus 51 PKkn~i~~~GP~~TGKS~f~~sl~~ 75 (205)
T d1tuea_ 51 PKKNCLVFCGPANTGKSYFGMSFIH 75 (205)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHH
Confidence 5667788999999999999988754
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.91 E-value=0.0032 Score=41.39 Aligned_cols=33 Identities=30% Similarity=0.399 Sum_probs=23.6
Q ss_pred HHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhc
Q 030120 6 SRMFSSLFGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 6 ~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.+.+.-+. ++.--++|.|+||+|||+|+.++..
T Consensus 16 D~~l~GGi-~~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 16 DEMCGGGF-FKDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp HHHTTSSE-ESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred HHhhcCCC-cCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 34444344 3455678889999999999988853
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=95.89 E-value=0.0029 Score=44.62 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=21.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHh
Q 030120 14 GNKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 14 ~~~~~~v~i~G~~~~GKssl~~~l~ 38 (182)
.....+++++||+|||||-|.++|.
T Consensus 65 ~~p~~niLfiGPTGvGKTElAk~LA 89 (364)
T d1um8a_ 65 ELSKSNILLIGPTGSGKTLMAQTLA 89 (364)
T ss_dssp TCCCCCEEEECCTTSSHHHHHHHHH
T ss_pred cCCCcceeeeCCCCccHHHHHHHHH
Confidence 3456679999999999999999885
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=95.86 E-value=0.0035 Score=43.25 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030120 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
.++++||+|+|||.|...+..
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~ 74 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSK 74 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCcchhHHHHHHHHh
Confidence 689999999999999999853
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.83 E-value=0.0017 Score=42.63 Aligned_cols=23 Identities=30% Similarity=0.281 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcC
Q 030120 18 ARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
-.|+|-|+.||||||+++.|...
T Consensus 3 k~I~ieG~dGsGKST~~~~L~~~ 25 (241)
T d1p5zb_ 3 KKISIEGNIAAGKSTFVNILKQL 25 (241)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999988653
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.82 E-value=0.0041 Score=41.02 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030120 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
.+++.|++|+|||+++..+..
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~ 56 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAK 56 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 378999999999999998753
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=95.81 E-value=0.003 Score=39.43 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMGE 41 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~~ 41 (182)
...=|++.|++|+||||+.-.+..+.
T Consensus 14 ~g~gvli~G~sg~GKS~la~~l~~~g 39 (169)
T d1ko7a2 14 YGVGVLITGDSGIGKSETALELIKRG 39 (169)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHcC
Confidence 34468999999999999998887664
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.77 E-value=0.0038 Score=40.39 Aligned_cols=21 Identities=43% Similarity=0.540 Sum_probs=17.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHh
Q 030120 18 ARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 18 ~~v~i~G~~~~GKssl~~~l~ 38 (182)
.=|+|-|..|+||||+++.|.
T Consensus 4 ~lI~ieG~dGsGKsT~~~~L~ 24 (209)
T d1nn5a_ 4 ALIVLEGVDRAGKSTQSRKLV 24 (209)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 447788999999999888774
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.69 E-value=0.00045 Score=44.20 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=16.1
Q ss_pred EEEcCCCCCHHHHHHHHh
Q 030120 21 LVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 21 ~i~G~~~~GKssl~~~l~ 38 (182)
+|+|+.|+|||||+.++.
T Consensus 28 vi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 28 TLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp HHHSCCSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 567999999999999984
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=95.66 E-value=0.08 Score=35.52 Aligned_cols=71 Identities=10% Similarity=0.111 Sum_probs=37.2
Q ss_pred CEEEEEEECCCCCCCccchh-hhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeE-EEEEeCCCCC
Q 030120 60 NIKFQVWDLGGQTSIRPYWR-CYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVA-LIFANKQDLP 131 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i-ivv~nK~D~~ 131 (182)
.+++.++|||+......... .....++.++++.... ..+..........+.......+.++ -+|.|+.+..
T Consensus 118 ~~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~~-~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~ 190 (289)
T d2afhe1 118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGE-MMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTD 190 (289)
T ss_dssp TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT
T ss_pred cCCeEeeccCCccCHHHHHHHHHhhccceeecccchh-HHHHHHHHHHHHHHHhhhhcccccccceeehhhcch
Confidence 46889999987553332222 2224567777665543 3334444443333322222234444 4789998753
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.58 E-value=0.0024 Score=43.57 Aligned_cols=17 Identities=24% Similarity=0.583 Sum_probs=15.7
Q ss_pred EEEcCCCCCHHHHHHHH
Q 030120 21 LVLGLDNAGKTTILYRL 37 (182)
Q Consensus 21 ~i~G~~~~GKssl~~~l 37 (182)
+++|+.|+|||+++.++
T Consensus 28 vlvG~NgsGKS~iL~Ai 44 (308)
T d1e69a_ 28 AIVGPNGSGKSNIIDAI 44 (308)
T ss_dssp EEECCTTTCSTHHHHHH
T ss_pred EEECCCCCcHHHHHHHH
Confidence 67899999999999988
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.58 E-value=0.0038 Score=40.98 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=19.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.--+.|.|+||+|||+|+..+...
T Consensus 34 G~l~~i~G~~G~GKT~~~l~~a~~ 57 (258)
T d2i1qa2 34 QSVTEFAGVFGSGKTQIMHQSCVN 57 (258)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 335678999999999999998643
|
| >d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU species: Salmonella typhimurium [TaxId: 90371]
Probab=95.57 E-value=0.063 Score=33.58 Aligned_cols=21 Identities=33% Similarity=0.264 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030120 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~ 40 (182)
++|+|...+|||.+...+...
T Consensus 2 iLVtGGarSGKS~~AE~l~~~ 22 (180)
T d1c9ka_ 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCccHHHHHHHHHhc
Confidence 589999999999999998754
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.51 E-value=0.004 Score=40.91 Aligned_cols=21 Identities=29% Similarity=0.322 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030120 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
-|+|=|.-||||||+++.|..
T Consensus 4 ~IviEG~~GsGKST~~~~L~~ 24 (241)
T d2ocpa1 4 RLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 578999999999999999964
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.46 E-value=0.0081 Score=39.48 Aligned_cols=25 Identities=24% Similarity=0.158 Sum_probs=20.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
++.--+.|.|+||+|||+|.-++..
T Consensus 35 p~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 35 ESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4444678999999999999998864
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.44 E-value=0.006 Score=39.65 Aligned_cols=31 Identities=19% Similarity=0.165 Sum_probs=21.7
Q ss_pred HHhhhhcCCCccEEEEEcCCCCCHHHHHHHHh
Q 030120 7 RMFSSLFGNKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 7 ~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~ 38 (182)
..+.-+. +..--+.|.|++|+|||+|+..+.
T Consensus 17 ~~l~GGi-~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 17 DISHGGL-PIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp HHTTSSE-ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HhhcCCC-cCCeEEEEEeCCCCCHHHHHHHHH
Confidence 3444444 344556788999999999987664
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.44 E-value=0.063 Score=34.56 Aligned_cols=65 Identities=11% Similarity=0.037 Sum_probs=38.0
Q ss_pred CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEEeCCCC
Q 030120 60 NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVALIFANKQDL 130 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~ 130 (182)
.+++.++|+|+... ......+..+|.++++..... .+......... ..... ....+-+|+|+.+-
T Consensus 109 ~~D~viiD~~~~~~--~~~~~~l~~ad~v~~v~~~~~-~~~~~~~~~~~-~~~~~--~~~~~~iv~N~~~~ 173 (232)
T d1hyqa_ 109 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEI-SSITDGLKTKI-VAERL--GTKVLGVVVNRITT 173 (232)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSH-HHHHHHHHHHH-HHHHH--TCEEEEEEEEEECT
T ss_pred ccceeeeccccccc--chhHHHhhhhheeeeeccccc-cchhhhhhhhh-hhhhc--cccccccccccccc
Confidence 45789999998653 233444566899999988753 22333333222 22222 12345578999874
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=95.40 E-value=0.01 Score=39.83 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=21.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
++.--+.+.|++++|||+|++.+..
T Consensus 102 ~k~n~~~l~G~~~tGKS~f~~~i~~ 126 (267)
T d1u0ja_ 102 GKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEEEcCCCCCHHHHHHHHHH
Confidence 5566778899999999999998854
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.33 E-value=0.0045 Score=44.03 Aligned_cols=25 Identities=20% Similarity=0.554 Sum_probs=19.6
Q ss_pred cCCCccEEEEEcCCCCCHHHHHHHHh
Q 030120 13 FGNKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 13 ~~~~~~~v~i~G~~~~GKssl~~~l~ 38 (182)
+.++.++ +|+|+.|+|||+++.++.
T Consensus 22 f~~~~l~-~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 22 FGESNFT-SIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp CTTCSEE-EEECSTTSSHHHHHHHHH
T ss_pred CCCCCEE-EEECCCCCCHHHHHHHHH
Confidence 3345665 477999999999999983
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=95.31 E-value=0.0055 Score=40.28 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030120 19 RILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~~ 40 (182)
-|+|.|..||||||+.+.|..+
T Consensus 3 iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999998543
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.24 E-value=0.0056 Score=43.68 Aligned_cols=26 Identities=35% Similarity=0.395 Sum_probs=21.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
...==|++.|++|+||||.+..++..
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~ 181 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQE 181 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhh
Confidence 34445899999999999999999753
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=95.14 E-value=0.005 Score=42.71 Aligned_cols=24 Identities=29% Similarity=0.194 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.++|.|=|+-|+||||+++.+...
T Consensus 5 ~lrI~IEG~iGsGKSTl~~~L~~~ 28 (331)
T d1osna_ 5 VLRIYLDGAYGIGKTTAAEEFLHH 28 (331)
T ss_dssp EEEEEEEESSSSCTTHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999654
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.12 E-value=0.0087 Score=38.74 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030120 20 ILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~~~ 40 (182)
+.+.|++|+|||-|++++...
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~ 59 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNE 59 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999998654
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=95.11 E-value=0.0069 Score=40.67 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=19.2
Q ss_pred hcCCCccEEEEEcCCCCCHHHHHHHHh
Q 030120 12 LFGNKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 12 ~~~~~~~~v~i~G~~~~GKssl~~~l~ 38 (182)
+..+..+ ++|.|+||+|||+|+..+.
T Consensus 31 G~~~G~l-~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 31 GARGGEV-IMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp SBCTTCE-EEEECSTTSSHHHHHHHHH
T ss_pred CCCCCeE-EEEEeCCCCCHHHHHHHHH
Confidence 3333334 6789999999999987774
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=95.05 E-value=0.0043 Score=42.15 Aligned_cols=18 Identities=33% Similarity=0.407 Sum_probs=14.4
Q ss_pred EEEEEcCCCCCHHHH-HHH
Q 030120 19 RILVLGLDNAGKTTI-LYR 36 (182)
Q Consensus 19 ~v~i~G~~~~GKssl-~~~ 36 (182)
.++|+|.||+||||. +++
T Consensus 16 ~~lI~g~aGTGKTt~l~~r 34 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVITNK 34 (306)
T ss_dssp EEEECCCTTSCHHHHHHHH
T ss_pred CEEEEeeCCccHHHHHHHH
Confidence 378999999999975 443
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=95.04 E-value=0.0084 Score=41.59 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
.-++|.|=|+-|+||||+++.|...
T Consensus 5 ~~~rI~iEG~iGsGKSTl~~~L~~~ 29 (333)
T d1p6xa_ 5 TIVRIYLDGVYGIGKSTTGRVMASA 29 (333)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred ceEEEEEECCccCCHHHHHHHHHHH
Confidence 3578999999999999999998653
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=94.88 E-value=0.0072 Score=41.82 Aligned_cols=23 Identities=30% Similarity=0.264 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030120 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
-++|.|=|+-|+||||+++.|..
T Consensus 4 ~lrI~IEG~iGsGKTTl~~~La~ 26 (329)
T d1e2ka_ 4 LLRVYIDGPHGMGKTTTTQLLVA 26 (329)
T ss_dssp EEEEEECSCTTSSHHHHHHHHTC
T ss_pred ceEEEEECCcCCCHHHHHHHHHH
Confidence 46799999999999999999854
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=94.72 E-value=0.017 Score=39.67 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030120 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
.++++|++|+|||.+.+.+..
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~ 75 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAA 75 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHHH
Confidence 678889999999999998853
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=94.71 E-value=0.0073 Score=41.33 Aligned_cols=16 Identities=31% Similarity=0.590 Sum_probs=13.6
Q ss_pred EEEEEcCCCCCHHHHH
Q 030120 19 RILVLGLDNAGKTTIL 34 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~ 34 (182)
.++|.|.+|+||||.+
T Consensus 26 ~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp CEEEEECTTSCHHHHH
T ss_pred CEEEEecCCccHHHHH
Confidence 4889999999999754
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=94.67 E-value=0.011 Score=39.97 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.+.=|++|+|++|+|||+|+..+..
T Consensus 41 grGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 41 GRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp BTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred cCCCeeeEeCCCCCCHHHHHHHHHH
Confidence 4556899999999999999988864
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.62 E-value=0.014 Score=37.74 Aligned_cols=23 Identities=43% Similarity=0.430 Sum_probs=19.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030120 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
..=|++-|.-||||||+++.|..
T Consensus 3 Gk~I~iEG~DGsGKST~~~~L~~ 25 (214)
T d1tmka_ 3 GKLILIEGLDRTGKTTQCNILYK 25 (214)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHHH
Confidence 44588999999999999998853
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=94.59 E-value=0.011 Score=39.55 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=17.0
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030120 19 RILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~ 38 (182)
-.+|.|++|+|||+|+-.+.
T Consensus 31 ~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 31 VGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 35689999999999987774
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=94.50 E-value=0.01 Score=42.48 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=18.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHh
Q 030120 17 EARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~ 38 (182)
.-+++|+|.+|+|||+++..+.
T Consensus 50 ~~H~~I~G~tGsGKT~~l~~li 71 (433)
T d1e9ra_ 50 PRHLLVNGATGTGKSVLLRELA 71 (433)
T ss_dssp GGCEEEEECTTSSHHHHHHHHH
T ss_pred cceEEEEeCCCCcHHHHHHHHH
Confidence 3469999999999999987775
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.20 E-value=0.13 Score=34.27 Aligned_cols=85 Identities=15% Similarity=0.120 Sum_probs=46.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcccccccccceeeEEEECCEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCC
Q 030120 17 EARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSD 96 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~ 96 (182)
.-=+.+.|++++|||+|+-.+..... -.+..+.++||-+.-..... ...--..|-++ ++.+.
T Consensus 60 g~i~e~~G~~~~GKT~l~l~~~~~~q---------------~~g~~~vyIDtE~~~~~e~a-~~~GvD~d~il-~~~~~- 121 (269)
T d1mo6a1 60 GRVIEIYGPESSGKTTVALHAVANAQ---------------AAGGVAAFIDAEHALDPDYA-KKLGVDTDSLL-VSQPD- 121 (269)
T ss_dssp SSEEEEECSSSSSHHHHHHHHHHHHH---------------HTTCEEEEEESSCCCCHHHH-HHHTCCGGGCE-EECCS-
T ss_pred ceeEEEecCCCcHHHHHHHHHHHHHh---------------cCCCEEEEEECCccCCHHHH-HHhCCCHHHeE-EecCC-
Confidence 33457889999999999877653210 02345677899884432222 22222334433 34433
Q ss_pred cccHHHHHHHHHHHHhccccCCCeEEEEE
Q 030120 97 TDRIQTAKEEFHAILEEEELKGAVALIFA 125 (182)
Q Consensus 97 ~~s~~~~~~~~~~~~~~~~~~~~~iivv~ 125 (182)
+.+...+.+..+... +.+.++|+
T Consensus 122 --~~E~~~~~~~~l~~~----~~~~liIi 144 (269)
T d1mo6a1 122 --TGEQALEIADMLIRS----GALDIVVI 144 (269)
T ss_dssp --SHHHHHHHHHHHHHT----TCEEEEEE
T ss_pred --CHHHHHHHHHHHHhc----CCCCEEEE
Confidence 355666655555443 34445554
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=94.20 E-value=0.015 Score=40.70 Aligned_cols=19 Identities=32% Similarity=0.380 Sum_probs=15.6
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 030120 19 RILVLGLDNAGKTTILYRL 37 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l 37 (182)
-.+|.|+||+|||+++..+
T Consensus 165 ~~vI~G~pGTGKTt~i~~~ 183 (359)
T d1w36d1 165 ISVISGGPGTGKTTTVAKL 183 (359)
T ss_dssp EEEEECCTTSTHHHHHHHH
T ss_pred eEEEEcCCCCCceehHHHH
Confidence 4778999999999987543
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=93.38 E-value=0.032 Score=36.82 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=20.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHhc
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
....-|+|.|++|+||+.+.+.+-.
T Consensus 21 ~~~~pvlI~Ge~GtGK~~~A~~ih~ 45 (247)
T d1ny5a2 21 CAECPVLITGESGVGKEVVARLIHK 45 (247)
T ss_dssp TCCSCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEECCCCcCHHHHHHHHHH
Confidence 4455689999999999999998853
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.07 E-value=0.031 Score=32.45 Aligned_cols=24 Identities=8% Similarity=0.029 Sum_probs=21.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHh
Q 030120 15 NKEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKssl~~~l~ 38 (182)
+..+.|.+.|..|+|||+|.+.|.
T Consensus 4 kqgf~i~~tg~~~~gk~~ia~al~ 27 (122)
T d1g8fa3 4 KQGFSIVLGNSLTVSREQLSIALL 27 (122)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHH
T ss_pred ccceEEEEeCCCCCCHHHHHHHHH
Confidence 457889999999999999999984
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.01 E-value=0.21 Score=31.96 Aligned_cols=68 Identities=10% Similarity=0.038 Sum_probs=44.2
Q ss_pred CEEEEEEECCCCCCCccchhhhcCCCCeEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEE-EEEeCCCCCCCC
Q 030120 60 NIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKEEFHAILEEEELKGAVAL-IFANKQDLPGAL 134 (182)
Q Consensus 60 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ii-vv~nK~D~~~~~ 134 (182)
.+++.++|+|+... ......+..+|.++++..... .+.....+....+ +. .+.|++ +|+|+.|.....
T Consensus 111 ~~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~~-~~---~~~~~~giv~N~~~~~~~~ 179 (237)
T d1g3qa_ 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEI-SCLTDTMKVGIVL-KK---AGLAILGFVLNRYGRSDRD 179 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCH-HHHHHHHHHHHHH-HH---TTCEEEEEEEEEETSCTTC
T ss_pred cCCEEEEccccccc--ccchhhhhhhhcccccccccc-eecchhhHHHHHH-hh---hhhhhhhhhhcccccccch
Confidence 46899999997643 344555678999999998752 3344444433333 22 456665 899999875443
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.89 E-value=0.039 Score=37.01 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=20.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhc
Q 030120 16 KEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
+.=|++|+|.+|+|||+|+..+..
T Consensus 67 kGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 67 KGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEeeCCCCCCHHHHHHHHHH
Confidence 344799999999999999888753
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=92.50 E-value=0.044 Score=36.54 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=18.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Q 030120 17 EARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 17 ~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
.-=+.+.|++++|||+|+-.+..
T Consensus 54 g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 54 GRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEecCCCcHHHHHHHHHHH
Confidence 34467899999999999877753
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.09 E-value=0.11 Score=33.86 Aligned_cols=19 Identities=21% Similarity=0.462 Sum_probs=17.3
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030120 20 ILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~ 38 (182)
++|.|+..+|||++++++.
T Consensus 44 ~iiTGpN~~GKSt~lk~i~ 62 (234)
T d1wb9a2 44 LIITGPNMGGKSTYMRQTA 62 (234)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEeccCchhhHHHHHHHH
Confidence 6799999999999999984
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.86 E-value=0.11 Score=32.95 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=24.8
Q ss_pred HHHHhhhhcCCCccEEEEEcCCCCCHHHHHHHHhc
Q 030120 5 FSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 5 ~~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~l~~ 39 (182)
++++..+ .....+++.|++|+|||++...+..
T Consensus 6 l~~~i~~---~~~~~~l~~G~~g~gk~~~a~~l~~ 37 (198)
T d2gnoa2 6 LKRIIEK---SEGISILINGEDLSYPREVSLELPE 37 (198)
T ss_dssp HHHHHHT---CSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred HHHHHhc---CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4444443 3567899999999999999998864
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.08 E-value=0.075 Score=35.80 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=20.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHhcC
Q 030120 16 KEARILVLGLDNAGKTTILYRLQMG 40 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~~~ 40 (182)
+.=|++|+|.+|+|||+|+..+...
T Consensus 67 ~GQr~~If~~~g~GKt~ll~~~~~~ 91 (285)
T d2jdia3 67 RGQRELIIGDRQTGKTSIAIDTIIN 91 (285)
T ss_dssp TTCBCEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEeecCCCCChHHHHHHHHHh
Confidence 4557999999999999998776543
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=89.74 E-value=0.11 Score=30.38 Aligned_cols=20 Identities=15% Similarity=0.032 Sum_probs=15.8
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030120 19 RILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~ 38 (182)
..++.++.|+|||.++-.+.
T Consensus 10 ~~ll~apTGsGKT~~~~~~~ 29 (136)
T d1a1va1 10 VAHLHAPTGSGKSTKVPAAY 29 (136)
T ss_dssp EEEEECCTTSCTTTHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 34679999999998876554
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=89.60 E-value=0.12 Score=30.77 Aligned_cols=17 Identities=41% Similarity=0.585 Sum_probs=13.9
Q ss_pred EEEcCCCCCHHH-HHHHH
Q 030120 21 LVLGLDNAGKTT-ILYRL 37 (182)
Q Consensus 21 ~i~G~~~~GKss-l~~~l 37 (182)
+++|+-.+|||| |++++
T Consensus 6 ~i~GpMfsGKTteLi~~~ 23 (139)
T d2b8ta1 6 FITGPMFAGKTAELIRRL 23 (139)
T ss_dssp EEECSTTSCHHHHHHHHH
T ss_pred EEEccccCHHHHHHHHHH
Confidence 578999999999 66665
|
| >d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Clostridium acetobutylicum [TaxId: 1488]
Probab=89.24 E-value=0.44 Score=28.28 Aligned_cols=18 Identities=28% Similarity=0.373 Sum_probs=13.8
Q ss_pred EEEcCCCCCHHHHHHHHh
Q 030120 21 LVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 21 ~i~G~~~~GKssl~~~l~ 38 (182)
+++|+-.+||||-+-+..
T Consensus 11 lI~GpMfSGKTteLi~~~ 28 (141)
T d1xx6a1 11 VIVGPMYSGKSEELIRRI 28 (141)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEEeccccHHHHHHHHHH
Confidence 568999999998654443
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=89.05 E-value=0.14 Score=34.17 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030120 19 RILVLGLDNAGKTTILYRLQM 39 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l~~ 39 (182)
=+.+.|++++|||+|+-.+..
T Consensus 59 itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 59 ITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEecCCccchHHHHHHHHH
Confidence 456899999999999988753
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=89.03 E-value=0.14 Score=33.09 Aligned_cols=19 Identities=37% Similarity=0.573 Sum_probs=17.4
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030120 20 ILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 20 v~i~G~~~~GKssl~~~l~ 38 (182)
++|.|+..+|||++++++.
T Consensus 38 ~iiTGpN~~GKSt~lk~i~ 56 (224)
T d1ewqa2 38 VLITGPNMAGKSTFLRQTA 56 (224)
T ss_dssp EEEESCSSSSHHHHHHHHH
T ss_pred EEEECCCccccchhhhhhH
Confidence 6899999999999999884
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=88.56 E-value=0.17 Score=32.00 Aligned_cols=21 Identities=38% Similarity=0.468 Sum_probs=17.2
Q ss_pred cEEEEEcCC-CCCHHHHHHHHh
Q 030120 18 ARILVLGLD-NAGKTTILYRLQ 38 (182)
Q Consensus 18 ~~v~i~G~~-~~GKssl~~~l~ 38 (182)
.|+.|.|-. |+||||+.-.|.
T Consensus 2 ~~~~i~gt~~GVGKTtvs~~La 23 (224)
T d1byia_ 2 KRYFVTGTDTEVGKTVASCALL 23 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHH
T ss_pred ceEEEEECCCCccHHHHHHHHH
Confidence 368899995 999999977773
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=88.13 E-value=0.11 Score=35.25 Aligned_cols=16 Identities=38% Similarity=0.600 Sum_probs=13.8
Q ss_pred EEEEcCCCCCHHHHHH
Q 030120 20 ILVLGLDNAGKTTILY 35 (182)
Q Consensus 20 v~i~G~~~~GKssl~~ 35 (182)
.+++|.+|+|||||-.
T Consensus 17 alfFGLSGTGKTTLs~ 32 (313)
T d2olra1 17 AVFFGLSGTGKTTLST 32 (313)
T ss_dssp EEEECSTTSSHHHHHC
T ss_pred EEEEccCCCCccccee
Confidence 4799999999999763
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=88.03 E-value=0.095 Score=35.11 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=19.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHh
Q 030120 16 KEARILVLGLDNAGKTTILYRLQ 38 (182)
Q Consensus 16 ~~~~v~i~G~~~~GKssl~~~l~ 38 (182)
+.=|++|+|.+|+|||+|+..+.
T Consensus 66 ~GQr~~Ifg~~g~GKt~l~~~~~ 88 (276)
T d1fx0a3 66 RGQRELIIGDRQTGKTAVATDTI 88 (276)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHH
T ss_pred CCceEeeccCCCCChHHHHHHHH
Confidence 44578999999999999987653
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=87.65 E-value=0.1 Score=30.40 Aligned_cols=18 Identities=28% Similarity=0.158 Sum_probs=14.3
Q ss_pred CCccEEEEEcCCCCCHHH
Q 030120 15 NKEARILVLGLDNAGKTT 32 (182)
Q Consensus 15 ~~~~~v~i~G~~~~GKss 32 (182)
++.-++++.+++|+|||.
T Consensus 5 ~~~~~~il~~~tGsGKT~ 22 (140)
T d1yksa1 5 KKGMTTVLDFHPGAGKTR 22 (140)
T ss_dssp STTCEEEECCCTTSSTTT
T ss_pred HcCCcEEEEcCCCCChhH
Confidence 345677888999999993
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=87.60 E-value=0.12 Score=35.21 Aligned_cols=17 Identities=35% Similarity=0.526 Sum_probs=14.3
Q ss_pred EEEEEcCCCCCHHHHHH
Q 030120 19 RILVLGLDNAGKTTILY 35 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~ 35 (182)
-.+++|.+|+|||||-.
T Consensus 16 valffGLSGTGKTTLs~ 32 (318)
T d1j3ba1 16 VAVFFGLSGTGKTTLST 32 (318)
T ss_dssp EEEEEECTTSCHHHHTC
T ss_pred EEEEEccCCCCcccccc
Confidence 35899999999999754
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=87.44 E-value=0.36 Score=31.82 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=16.5
Q ss_pred CCccEEE-EEcCCCCCHHHHHHHH
Q 030120 15 NKEARIL-VLGLDNAGKTTILYRL 37 (182)
Q Consensus 15 ~~~~~v~-i~G~~~~GKssl~~~l 37 (182)
+...+|+ +.|-.|+||||+.-.|
T Consensus 17 ~~~~~iii~sGKGGVGKTT~a~nL 40 (279)
T d1ihua2 17 RNEHGLIMLMGKGGVGKTTMAAAI 40 (279)
T ss_dssp TTSCEEEEEECSTTSSHHHHHHHH
T ss_pred cCCCEEEEEECCCCCCHHHHHHHH
Confidence 4445555 5599999999986555
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=86.91 E-value=0.22 Score=33.17 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=15.5
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 030120 19 RILVLGLDNAGKTTILYRL 37 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~~~l 37 (182)
-+.+.|-.|+||||+.-.+
T Consensus 10 ~i~~sGKGGVGKTTvaa~l 28 (296)
T d1ihua1 10 YLFFTGKGGVGKTSISCAT 28 (296)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCcChHHHHHHHH
Confidence 4568899999999976666
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=86.81 E-value=0.15 Score=34.74 Aligned_cols=16 Identities=38% Similarity=0.603 Sum_probs=14.1
Q ss_pred EEEEEcCCCCCHHHHH
Q 030120 19 RILVLGLDNAGKTTIL 34 (182)
Q Consensus 19 ~v~i~G~~~~GKssl~ 34 (182)
..+++|-+|+|||||.
T Consensus 16 ~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 16 VTVFFGLSGTGKTTLS 31 (323)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEccCCCCcccce
Confidence 4579999999999997
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=86.71 E-value=0.95 Score=27.80 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=18.2
Q ss_pred CCccEEEEEcC-CCCCHHHHHHHHhcCC
Q 030120 15 NKEARILVLGL-DNAGKTTILYRLQMGE 41 (182)
Q Consensus 15 ~~~~~v~i~G~-~~~GKssl~~~l~~~~ 41 (182)
.+.+||+|+|. .++|-|.+. .+..+.
T Consensus 22 k~~~kV~I~GA~G~Ig~~l~~-~La~g~ 48 (175)
T d7mdha1 22 KKLVNIAVSGAAGMISNHLLF-KLASGE 48 (175)
T ss_dssp CCCEEEEEETTTSHHHHHHHH-HHHHTT
T ss_pred CCCcEEEEECCCcHHHHHHHH-HHHcCc
Confidence 57789999996 778866554 454443
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=85.72 E-value=2.1 Score=25.23 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=17.5
Q ss_pred EEEEEcC-CCCCHHHHHHHHhcCCc
Q 030120 19 RILVLGL-DNAGKTTILYRLQMGEV 42 (182)
Q Consensus 19 ~v~i~G~-~~~GKssl~~~l~~~~~ 42 (182)
||+|+|. ..+| +++...+..+..
T Consensus 2 Kv~IiGA~G~VG-~~~A~~l~~~~~ 25 (144)
T d1mlda1 2 KVAVLGASGGIG-QPLSLLLKNSPL 25 (144)
T ss_dssp EEEEETTTSTTH-HHHHHHHHTCTT
T ss_pred eEEEECCCChHH-HHHHHHHHhCCc
Confidence 8999995 8999 566667766654
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=84.62 E-value=0.51 Score=30.58 Aligned_cols=30 Identities=27% Similarity=0.246 Sum_probs=21.8
Q ss_pred HhhhhcCCCccEEEEEcCCCCCHHHHHHHH
Q 030120 8 MFSSLFGNKEARILVLGLDNAGKTTILYRL 37 (182)
Q Consensus 8 ~~~~~~~~~~~~v~i~G~~~~GKssl~~~l 37 (182)
..+....++....++.|..|+|||-+.-..
T Consensus 67 i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a 96 (233)
T d2eyqa3 67 VLSDMCQPLAMDRLVCGDVGFGKTEVAMRA 96 (233)
T ss_dssp HHHHHHSSSCCEEEEECCCCTTTHHHHHHH
T ss_pred HHHHHhccCccCeEEEcCCCCCcHHHHHHH
Confidence 344445566778899999999999764433
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=83.03 E-value=0.44 Score=29.63 Aligned_cols=15 Identities=33% Similarity=0.348 Sum_probs=12.9
Q ss_pred EEEEEcCCCCCHHHH
Q 030120 19 RILVLGLDNAGKTTI 33 (182)
Q Consensus 19 ~v~i~G~~~~GKssl 33 (182)
++++++++|+|||.+
T Consensus 25 n~lv~~pTGsGKT~i 39 (200)
T d1wp9a1 25 NCLIVLPTGLGKTLI 39 (200)
T ss_dssp CEEEECCTTSCHHHH
T ss_pred CeEEEeCCCCcHHHH
Confidence 478999999999964
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=82.41 E-value=0.47 Score=31.40 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=22.2
Q ss_pred HHHhhhhcCCCccEEEEEcCCCCCHHHHHHH
Q 030120 6 SRMFSSLFGNKEARILVLGLDNAGKTTILYR 36 (182)
Q Consensus 6 ~~~~~~~~~~~~~~v~i~G~~~~GKssl~~~ 36 (182)
.........++..+-++-|+.|+|||-+.-.
T Consensus 93 ~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~ 123 (264)
T d1gm5a3 93 QEIRNDMISEKPMNRLLQGDVGSGKTVVAQL 123 (264)
T ss_dssp HHHHHHHHSSSCCCCEEECCSSSSHHHHHHH
T ss_pred HHHHHHhhccCcceeeeeccccccccHHHHH
Confidence 3344555556777889999999999966433
|