Citrus Sinensis ID: 030161

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180--
MVLSKRYLFFSVLHLLLLTDTALCIRFPDRVSTSINDELGRPLKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQVL
ccccccHHHHHHHHHHHcccccccccccccccccccccccccccEEEEcccccHHccccccccccEEEEEcccccccccccccccccccEEEEEEEEccccccHHHHHHHHHcccccccccccccccccccccEEEEccHHHHHHHHHHHHHHHHcccccccEEEEEccccccccccccccc
cccccHHHHcccccccccHHHccccccccccHccccccccccHHEEEEEEccHHHHHHHHcccccEEEEEEEEEcccccccccccccccEEEEEEEEccccccHHHHHHHHHHHcccccccEEccEEcHHHcEEEEEccHHHHHHHHHHHHHHHHHHccccEEEEEccccccEEHHHHHccc
mvlskrylFFSVLHLLLLTDtalcirfpdrvstsindelGRPLKAAVFALGSFWRSEAVFGCLNGVVRTtvgyaggsktnpefrnlgdhaesvqveydprvINFRQLLEVFWTshdcrqvfgqgpdvgnqYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVafypaepehqvl
MVLSKRYLFFSVLHLLLLTDTALCIRFPDRVSTSINDELGRPLKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFgqgpdvgnQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAfypaepehqvl
MVLSKRYlffsvlhlllltdtalCIRFPDRVSTSINDELGRPLKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQVL
****KRYLFFSVLHLLLLTDTALCIRFPDRVSTSINDELGRPLKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTN************************TTQIQQLVAFY*********
*********FS**HLL**************************LKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAA*********SKSSIVTTQIQQLVAFYPAEPEHQ**
MVLSKRYLFFSVLHLLLLTDTALCIRFPDRVSTSINDELGRPLKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEES*******************TTQIQQLVAFYPAEPEHQVL
************LHLLLLTDTALCIRFPDRVSTSINDELGRPLKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQVL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MVLSKRYLFFSVLHLLLLTDTALCIRFPDRVSTSINDELGRPLKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQVL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query182 2.2.26 [Sep-21-2011]
Q9SL43254 Peptide methionine sulfox no no 0.939 0.673 0.706 6e-70
Q5VPG8254 Peptide methionine sulfox yes no 0.730 0.523 0.759 5e-59
P08761246 Peptide methionine sulfox yes no 0.719 0.532 0.429 3e-29
Q551H3147 Peptide methionine sulfox yes no 0.752 0.931 0.436 8e-26
A9MEZ2212 Peptide methionine sulfox N/A no 0.758 0.650 0.445 2e-25
B4TT49212 Peptide methionine sulfox yes no 0.758 0.650 0.431 3e-25
Q8YXZ4163 Peptide methionine sulfox yes no 0.763 0.852 0.402 3e-25
Q6LYY1157 Peptide methionine sulfox yes no 0.763 0.885 0.409 4e-25
A7MM56212 Peptide methionine sulfox yes no 0.758 0.650 0.431 7e-25
B2TZL3212 Peptide methionine sulfox yes no 0.758 0.650 0.431 8e-25
>sp|Q9SL43|MSRA5_ARATH Peptide methionine sulfoxide reductase A5 OS=Arabidopsis thaliana GN=MSRA5 PE=2 SV=1 Back     alignment and function desciption
 Score =  263 bits (671), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 123/174 (70%), Positives = 145/174 (83%), Gaps = 3/174 (1%)

Query: 7   YLFFSVLHLLLLTDTALCIRFPDRVSTSINDELGRPLKAAVFALGSFWRSEAVFGCLNGV 66
           + FF  + LL   D  + IR  +++S ++ D   RPLK+AVFALGSFWRSEA FGC+NGV
Sbjct: 19  FFFFLCVSLL---DKTVSIRISNQISDTVVDSPDRPLKSAVFALGSFWRSEAAFGCINGV 75

Query: 67  VRTTVGYAGGSKTNPEFRNLGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPD 126
           VRT+ GYAGG+KTNPE+RNLGDHAESVQVEYDPR+I +RQLL+VFW+SHD RQVFGQGPD
Sbjct: 76  VRTSAGYAGGTKTNPEYRNLGDHAESVQVEYDPRIIGYRQLLDVFWSSHDSRQVFGQGPD 135

Query: 127 VGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQ 180
           VGNQYRS IFTN TEE RLA+ SKEREQ+ ++SSIVTTQIQQL  FY AEP+HQ
Sbjct: 136 VGNQYRSCIFTNSTEELRLASTSKEREQLNTRSSIVTTQIQQLGTFYRAEPDHQ 189
Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRA family specifically reduces the MetSO S-enantiomer.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 8EC: .EC: 4EC: .EC: 1EC: 1
>sp|Q5VPG8|MSRA5_ORYSJ Peptide methionine sulfoxide reductase A5 OS=Oryza sativa subsp. japonica GN=MSRA5 PE=2 SV=1 Back     alignment and function description
>sp|P08761|MSRA_DROME Peptide methionine sulfoxide reductase OS=Drosophila melanogaster GN=Eip71CD PE=2 SV=2 Back     alignment and function description
>sp|Q551H3|MSRA_DICDI Peptide methionine sulfoxide reductase OS=Dictyostelium discoideum GN=msrA PE=3 SV=1 Back     alignment and function description
>sp|A9MEZ2|MSRA_SALAR Peptide methionine sulfoxide reductase MsrA OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=msrA PE=3 SV=1 Back     alignment and function description
>sp|B4TT49|MSRA_SALSV Peptide methionine sulfoxide reductase MsrA OS=Salmonella schwarzengrund (strain CVM19633) GN=msrA PE=3 SV=1 Back     alignment and function description
>sp|Q8YXZ4|MSRA1_NOSS1 Peptide methionine sulfoxide reductase MsrA 1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=msrA1 PE=3 SV=1 Back     alignment and function description
>sp|Q6LYY1|MSRA_METMP Peptide methionine sulfoxide reductase MsrA OS=Methanococcus maripaludis (strain S2 / LL) GN=msrA PE=3 SV=1 Back     alignment and function description
>sp|A7MM56|MSRA_CROS8 Peptide methionine sulfoxide reductase MsrA OS=Cronobacter sakazakii (strain ATCC BAA-894) GN=msrA PE=3 SV=1 Back     alignment and function description
>sp|B2TZL3|MSRA_SHIB3 Peptide methionine sulfoxide reductase MsrA OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=msrA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query182
344227187252 methionine sulfoxide reductase A5 [Solan 0.989 0.714 0.748 2e-74
225431171252 PREDICTED: peptide methionine sulfoxide 0.950 0.686 0.757 4e-72
297832444254 peptide methionine sulfoxide reductase f 0.939 0.673 0.735 2e-71
255579821253 methionine sulfoxide reductase, putative 0.879 0.632 0.796 1e-70
356502124250 PREDICTED: peptide methionine sulfoxide 0.956 0.696 0.748 1e-70
42570819192 peptide methionine sulfoxide reductase A 0.945 0.895 0.708 6e-69
15227955254 peptide methionine sulfoxide reductase A 0.939 0.673 0.706 3e-68
356559314250 PREDICTED: peptide methionine sulfoxide 0.939 0.684 0.741 5e-68
118489617252 unknown [Populus trichocarpa x Populus d 0.895 0.646 0.768 2e-67
224094957238 methionine sulfoxide reductase type [Pop 0.895 0.684 0.768 2e-67
>gi|344227187|gb|AEN03273.1| methionine sulfoxide reductase A5 [Solanum lycopersicum] Back     alignment and taxonomy information
 Score =  283 bits (725), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 140/187 (74%), Positives = 153/187 (81%), Gaps = 7/187 (3%)

Query: 1   MVLSKRYLFFS--VLH-----LLLLTDTALCIRFPDRVSTSINDELGRPLKAAVFALGSF 53
           M ++K   FFS    H     +LL  +  L IRFPDR+     D   +PL+ AVFALGSF
Sbjct: 1   MKVAKSNYFFSHFCFHFLFTIILLALNPVLSIRFPDRIQEVPQDASNQPLQTAVFALGSF 60

Query: 54  WRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGDHAESVQVEYDPRVINFRQLLEVFWT 113
           WRSEA FGCLNG+VRTTVGY+GGSK NPE+RNLGDHAESVQVEYDPRV+ FRQLLEVFW+
Sbjct: 61  WRSEASFGCLNGIVRTTVGYSGGSKANPEYRNLGDHAESVQVEYDPRVLGFRQLLEVFWS 120

Query: 114 SHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFY 173
           SHD RQVFGQGPDVGNQYRSIIFT+GTEESRLAA SKEREQ KSKSSIVTTQIQQL AFY
Sbjct: 121 SHDSRQVFGQGPDVGNQYRSIIFTSGTEESRLAAVSKEREQSKSKSSIVTTQIQQLEAFY 180

Query: 174 PAEPEHQ 180
           PAEPEHQ
Sbjct: 181 PAEPEHQ 187

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225431171|ref|XP_002269473.1| PREDICTED: peptide methionine sulfoxide reductase A5 [Vitis vinifera] gi|297735029|emb|CBI17391.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297832444|ref|XP_002884104.1| peptide methionine sulfoxide reductase family protein [Arabidopsis lyrata subsp. lyrata] gi|297329944|gb|EFH60363.1| peptide methionine sulfoxide reductase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|255579821|ref|XP_002530748.1| methionine sulfoxide reductase, putative [Ricinus communis] gi|223529712|gb|EEF31654.1| methionine sulfoxide reductase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356502124|ref|XP_003519871.1| PREDICTED: peptide methionine sulfoxide reductase A5-like [Glycine max] Back     alignment and taxonomy information
>gi|42570819|ref|NP_973483.1| peptide methionine sulfoxide reductase A5 [Arabidopsis thaliana] gi|330251623|gb|AEC06717.1| peptide methionine sulfoxide reductase A5 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15227955|ref|NP_179394.1| peptide methionine sulfoxide reductase A5 [Arabidopsis thaliana] gi|75266015|sp|Q9SL43.1|MSRA5_ARATH RecName: Full=Peptide methionine sulfoxide reductase A5; Short=AtMSRA5; AltName: Full=Peptide-methionine (S)-S-oxide reductase; Short=Peptide Met(O) reductase; AltName: Full=Protein-methionine-S-oxide reductase; Flags: Precursor gi|4406815|gb|AAD20123.1| putative peptide methionine sulfoxide reductase [Arabidopsis thaliana] gi|27765030|gb|AAO23636.1| At2g18030 [Arabidopsis thaliana] gi|110742978|dbj|BAE99383.1| putative peptide methionine sulfoxide reductase [Arabidopsis thaliana] gi|330251624|gb|AEC06718.1| peptide methionine sulfoxide reductase A5 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356559314|ref|XP_003547945.1| PREDICTED: peptide methionine sulfoxide reductase A5-like [Glycine max] Back     alignment and taxonomy information
>gi|118489617|gb|ABK96610.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|224094957|ref|XP_002310304.1| methionine sulfoxide reductase type [Populus trichocarpa] gi|222853207|gb|EEE90754.1| methionine sulfoxide reductase type [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query182
TAIR|locus:2060907254 MSRA5 "AT2G18030" [Arabidopsis 0.857 0.614 0.756 2.3e-62
FB|FBgn0000565246 Eip71CD "Ecdysone-induced prot 0.719 0.532 0.429 3.1e-28
DICTYBASE|DDB_G0276579147 msrA "peptide methionine sulfo 0.736 0.911 0.453 1.4e-25
UNIPROTKB|P0A744212 msrA "methionine sulfoxide red 0.758 0.650 0.431 2e-24
UNIPROTKB|E2QV17233 MSRA "Uncharacterized protein" 0.741 0.579 0.450 2.6e-24
ZFIN|ZDB-GENE-050309-123238 im:7149628 "im:7149628" [Danio 0.758 0.579 0.406 3.8e-23
MGI|MGI:106916233 Msra "methionine sulfoxide red 0.741 0.579 0.422 1.3e-22
TIGR_CMR|CBU_1306284 CBU_1306 "peptide methionine s 0.791 0.507 0.373 1.6e-22
TIGR_CMR|GSU_3161162 GSU_3161 "peptide methionine s 0.758 0.851 0.391 2.6e-22
TAIR|locus:2151646202 PMSR1 "AT5G61640" [Arabidopsis 0.835 0.752 0.373 2.6e-22
TAIR|locus:2060907 MSRA5 "AT2G18030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
 Identities = 118/156 (75%), Positives = 137/156 (87%)

Query:    25 IRFPDRVSTSINDELGRPLKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFR 84
             IR  +++S ++ D   RPLK+AVFALGSFWRSEA FGC+NGVVRT+ GYAGG+KTNPE+R
Sbjct:    34 IRISNQISDTVVDSPDRPLKSAVFALGSFWRSEAAFGCINGVVRTSAGYAGGTKTNPEYR 93

Query:    85 NLGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESR 144
             NLGDHAESVQVEYDPR+I +RQLL+VFW+SHD RQVFGQGPDVGNQYRS IFTN TEE R
Sbjct:    94 NLGDHAESVQVEYDPRIIGYRQLLDVFWSSHDSRQVFGQGPDVGNQYRSCIFTNSTEELR 153

Query:   145 LAAHSKEREQMKSKSSIVTTQIQQLVAFYPAEPEHQ 180
             LA+ SKEREQ+ ++SSIVTTQIQQL  FY AEP+HQ
Sbjct:   154 LASTSKEREQLNTRSSIVTTQIQQLGTFYRAEPDHQ 189
GO:0006464 "cellular protein modification process" evidence=ISS
GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0016671 "oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor" evidence=IEA
GO:0019538 "protein metabolic process" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
FB|FBgn0000565 Eip71CD "Ecdysone-induced protein 28/29kD" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0276579 msrA "peptide methionine sulfoxide reductase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|P0A744 msrA "methionine sulfoxide reductase A" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|E2QV17 MSRA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050309-123 im:7149628 "im:7149628" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:106916 Msra "methionine sulfoxide reductase A" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1306 CBU_1306 "peptide methionine sulfoxide reductase" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_3161 GSU_3161 "peptide methionine sulfoxide reductase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TAIR|locus:2151646 PMSR1 "AT5G61640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5VPG8MSRA5_ORYSJ1, ., 8, ., 4, ., 1, 10.75930.73070.5236yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.8.4LOW CONFIDENCE prediction!
4th Layer1.8.4.110.914

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query182
pfam01625147 pfam01625, PMSR, Peptide methionine sulfoxide redu 2e-51
PRK14054172 PRK14054, PRK14054, methionine sulfoxide reductase 2e-48
COG0225174 COG0225, MsrA, Peptide methionine sulfoxide reduct 4e-48
PRK13014186 PRK13014, PRK13014, methionine sulfoxide reductase 1e-45
PRK05550283 PRK05550, PRK05550, bifunctional methionine sulfox 7e-44
PRK00058213 PRK00058, PRK00058, methionine sulfoxide reductase 6e-41
TIGR00401149 TIGR00401, msrA, methionine-S-sulfoxide reductase 5e-40
PRK14018 521 PRK14018, PRK14018, trifunctional thioredoxin/meth 9e-21
PRK05528156 PRK05528, PRK05528, methionine sulfoxide reductase 2e-11
>gnl|CDD|216614 pfam01625, PMSR, Peptide methionine sulfoxide reductase Back     alignment and domain information 
 Score =  161 bits (410), Expect = 2e-51
 Identities = 67/139 (48%), Positives = 82/139 (58%), Gaps = 5/139 (3%)

Query: 46  AVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRN----LGDHAESVQVEYDPRV 101
           A FA G FW  EAVF  L GV+ T VGYAGG   NP +         HAE+V+V YDP  
Sbjct: 3   ATFAGGCFWGVEAVFEKLPGVISTEVGYAGGDTENPTYEEVCSGTTGHAEAVRVTYDPSK 62

Query: 102 INFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSKSSI 161
           I++ +LLEVF+  HD   +  QG D G QYRS IF +  E+ ++A  S ER Q K    I
Sbjct: 63  ISYEELLEVFFEIHDPTDLNRQGNDRGTQYRSAIFYHDEEQKKIAEASLERLQKKFGKPI 122

Query: 162 VTTQIQQLVAFYPAEPEHQ 180
           V T+I+ L  FYPAE  HQ
Sbjct: 123 V-TEIEPLTTFYPAEDYHQ 140

This enzyme repairs damaged proteins. Methionine sulfoxide in proteins is reduced to methionine. Length = 147
>gnl|CDD|237597 PRK14054, PRK14054, methionine sulfoxide reductase A; Provisional Back     alignment and domain information
>gnl|CDD|223303 COG0225, MsrA, Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|237269 PRK13014, PRK13014, methionine sulfoxide reductase A; Provisional Back     alignment and domain information
>gnl|CDD|235499 PRK05550, PRK05550, bifunctional methionine sulfoxide reductase B/A protein; Provisional Back     alignment and domain information
>gnl|CDD|234604 PRK00058, PRK00058, methionine sulfoxide reductase A; Provisional Back     alignment and domain information
>gnl|CDD|129496 TIGR00401, msrA, methionine-S-sulfoxide reductase Back     alignment and domain information
>gnl|CDD|184456 PRK14018, PRK14018, trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional Back     alignment and domain information
>gnl|CDD|235497 PRK05528, PRK05528, methionine sulfoxide reductase A; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 182
COG0225174 MsrA Peptide methionine sulfoxide reductase [Postt 100.0
TIGR00401149 msrA methionine-S-sulfoxide reductase. This model 100.0
PRK13014186 methionine sulfoxide reductase A; Provisional 100.0
PRK14054172 methionine sulfoxide reductase A; Provisional 100.0
KOG1635191 consensus Peptide methionine sulfoxide reductase [ 100.0
PRK00058213 methionine sulfoxide reductase A; Provisional 100.0
PF01625155 PMSR: Peptide methionine sulfoxide reductase; Inte 100.0
PRK05528156 methionine sulfoxide reductase A; Provisional 100.0
PRK05550283 bifunctional methionine sulfoxide reductase B/A pr 100.0
PRK14018 521 trifunctional thioredoxin/methionine sulfoxide red 100.0
PF0040362 HMA: Heavy-metal-associated domain; InterPro: IPR0 95.11
COG260871 CopZ Copper chaperone [Inorganic ion transport and 88.32
PF0717295 GRP: Glycine rich protein family; InterPro: IPR010 83.35
PF0809827 ATX_III: Anemonia sulcata toxin III family; InterP 80.02
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=2.4e-69  Score=438.91  Aligned_cols=143  Identities=41%  Similarity=0.651  Sum_probs=137.4

Q ss_pred             CCCccEEEEcCCcccchhhhhcccCCeEEEeeeecCCCCCCCCccccC----CceeEEEEEEcCCCCCHHHHHHHHHhcC
Q 030161           40 GRPLKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLG----DHAESVQVEYDPRVINFRQLLEVFWTSH  115 (182)
Q Consensus        40 ~~~~~~a~fagGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtY~~v~----gH~EaV~V~yDp~~is~~~LL~~F~~~h  115 (182)
                      ...|++|+||||||||+|+.|+++|||++|+|||+||+++||||++||    ||+|+|+|+|||++|||++||++||++|
T Consensus         3 ~~~~~~a~fagGCFWg~E~~f~~i~GV~~t~~GYagG~~~nptY~~Vcsg~TgHaE~V~V~yDp~~isy~~LL~~ff~ih   82 (174)
T COG0225           3 PAGMEKAYFAGGCFWGVEAYFEQIPGVLSTVSGYAGGHTPNPTYEEVCSGTTGHAEAVEVTYDPKVISYEELLEVFFEIH   82 (174)
T ss_pred             cCCcEEEEEeccCccchHHHHhhCCCeEEEeeeEcCCCCCCCChhhccCCCCCceEEEEEEeCCccccHHHHHHHHheec
Confidence            356899999999999999999999999999999999999999999997    8999999999999999999999999999


Q ss_pred             CCCcCCCCCCCCCCCceeeeccCCHHHHHHHHHHHHHHHh-hcCCCceEEEEeeCCCcccCcccccCC
Q 030161          116 DCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQM-KSKSSIVTTQIQQLVAFYPAEPEHQVL  182 (182)
Q Consensus       116 dPt~~~~Qg~d~G~QYRSaIf~~~~~q~~~a~~~~~~~~~-~~~~~~i~TeI~p~~~Fy~AEeyHQ~Y  182 (182)
                      |||+.||||||+|+||||+||++|++|+++|+++++++++ +.+.++|+|||+|+++||+||||||+|
T Consensus        83 DPT~~nrQGnD~GtqYRs~Iy~~~~~q~~~a~~~~~~~q~~~~~~~~IvteI~p~~~Fy~AEeYHQ~Y  150 (174)
T COG0225          83 DPTSLNRQGNDRGTQYRSAIYYTNEEQKAIAEASIEELQASGYFKKPIVTEIEPAKNFYPAEEYHQDY  150 (174)
T ss_pred             CCCCCCccCCcccccceeEEEEcCHHHHHHHHHHHHHHHHhccCCCCeEEEeeccccCcccHHHHHHH
Confidence            9999999999999999999999999999999999998887 455669999999999999999999997

>TIGR00401 msrA methionine-S-sulfoxide reductase Back     alignment and domain information
>PRK13014 methionine sulfoxide reductase A; Provisional Back     alignment and domain information
>PRK14054 methionine sulfoxide reductase A; Provisional Back     alignment and domain information
>KOG1635 consensus Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK00058 methionine sulfoxide reductase A; Provisional Back     alignment and domain information
>PF01625 PMSR: Peptide methionine sulfoxide reductase; InterPro: IPR002569 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine [] Back     alignment and domain information
>PRK05528 methionine sulfoxide reductase A; Provisional Back     alignment and domain information
>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional Back     alignment and domain information
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional Back     alignment and domain information
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures Back     alignment and domain information
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins Back     alignment and domain information
>PF08098 ATX_III: Anemonia sulcata toxin III family; InterPro: IPR012509 This entry occurs within the Anemonia sulcata toxin III (ATX III) neurotoxin family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query182
2iem_A211 Solution Structure Of An Oxidized Form (Cys51-Cys19 2e-25
1ff3_A211 Structure Of The Peptide Methionine Sulfoxide Reduc 2e-25
2gt3_A212 Solution Structure And Dynamics Of The Reduced Form 2e-25
2l90_A212 Solution Structure Of Murine Myristoylated Msra Len 3e-22
1fva_A217 Crystal Structure Of Bovine Methionine Sulfoxide Re 3e-22
4gwb_A168 Crystal Structure Of Putative Peptide Methionine Su 8e-22
1fvg_A199 Crystal Structure Of Bovine Peptide Methionine Sulf 1e-21
2j89_A261 Functional And Structural Aspects Of Poplar Cytosol 8e-20
1nwa_A203 Structure Of Mycobacterium Tuberculosis Methionine 1e-19
3bqf_A194 Structure Of The Central Domain (Msra) Of Neisseria 2e-16
3bqg_A194 Structure Of The Central Domain (msra) Of Neisseria 5e-16
3bqe_A194 Structure Of The Central Domain (Msra) Of Neisseria 6e-16
3bqh_A193 Structure Of The Central Domain (Msra) Of Neisseria 7e-16
3pin_B183 Crystal Structure Of Mxr1 From Saccharomyces Cerevi 9e-16
3pil_A184 Crystal Structure Of Mxr1 From Saccharomyces Cerevi 5e-15
3pim_A187 Crystal Structure Of Mxr1 From Saccharomyces Cerevi 6e-15
3e0m_A 313 Crystal Structure Of Fusion Protein Of Msra And Msr 7e-14
>pdb|2IEM|A Chain A, Solution Structure Of An Oxidized Form (Cys51-Cys198) Of E. Coli Methionine Sulfoxide Reductase A (Msra) Length = 211 Back     alignment and structure 
Iteration: 1

 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/146 (43%), Positives = 84/146 (57%), Gaps = 8/146 (5%)
Query: 43  LKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYD 98
           ++ A+FA+G FW  E +F  L GV  T  GY GG   NP +R +  GD  HAE+V++ YD
Sbjct: 42  MEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVSSGDTGHAEAVRIVYD 101
Query: 99  PRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSK 158
           P VI++ QLL+VFW +HD  Q   QG D G QYRS I+    E+   A  S ER Q    
Sbjct: 102 PSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAML 161
Query: 159 SSI----VTTQIQQLVAFYPAEPEHQ 180
           ++     +TT+I     FY AE +HQ
Sbjct: 162 AADDDRHITTEIANATPFYYAEDDHQ 187
>pdb|1FF3|A Chain A, Structure Of The Peptide Methionine Sulfoxide Reductase From Escherichia Coli Length = 211 Back     alignment and structure
>pdb|2GT3|A Chain A, Solution Structure And Dynamics Of The Reduced Form Of Methionine Sulfoxide Reductase A From Escherichia Coli, A 23 Kda Protein Length = 212 Back     alignment and structure
>pdb|2L90|A Chain A, Solution Structure Of Murine Myristoylated Msra Length = 212 Back     alignment and structure
>pdb|1FVA|A Chain A, Crystal Structure Of Bovine Methionine Sulfoxide Reductase Length = 217 Back     alignment and structure
>pdb|4GWB|A Chain A, Crystal Structure Of Putative Peptide Methionine Sulfoxide Reductase From Sinorhizobium Meliloti 1021 Length = 168 Back     alignment and structure
>pdb|1FVG|A Chain A, Crystal Structure Of Bovine Peptide Methionine Sulfoxide Reductase Length = 199 Back     alignment and structure
>pdb|2J89|A Chain A, Functional And Structural Aspects Of Poplar Cytosolic And Plastidial Type A Methionine Sulfoxide Reductases Length = 261 Back     alignment and structure
>pdb|1NWA|A Chain A, Structure Of Mycobacterium Tuberculosis Methionine Sulfoxide Reductase A In Complex With Protein-Bound Methionine Length = 203 Back     alignment and structure
>pdb|3BQF|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria Meningitidis Pilb (Complex With A Substrate) Length = 194 Back     alignment and structure
>pdb|3BQG|A Chain A, Structure Of The Central Domain (msra) Of Neisseria Meningitidis Pilb (sulfenic Acid Form) Length = 194 Back     alignment and structure
>pdb|3BQE|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria Meningitidis Pilb (Reduced Form) Length = 194 Back     alignment and structure
>pdb|3BQH|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria Meningitidis Pilb (Oxidized Form) Length = 193 Back     alignment and structure
>pdb|3PIN|B Chain B, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In Complex With Trx2 Length = 183 Back     alignment and structure
>pdb|3PIL|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In Reduced Form Length = 184 Back     alignment and structure
>pdb|3PIM|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In Unusual Oxidized Form Length = 187 Back     alignment and structure
>pdb|3E0M|A Chain A, Crystal Structure Of Fusion Protein Of Msra And Msrb Length = 313 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query182
1nwa_A203 Peptide methionine sulfoxide reductase MSRA; oxido 4e-56
1ff3_A211 Peptide methionine sulfoxide reductase; alpha beta 5e-53
2j89_A261 Methionine sulfoxide reductase A; MSRA, poplar, ox 9e-53
3bqh_A193 PILB, peptide methionine sulfoxide reductase MSRA/ 2e-52
1fvg_A199 Peptide methionine sulfoxide reductase; oxidoreduc 3e-52
3pim_A187 Peptide methionine sulfoxide reductase; methionine 2e-49
3e0m_A 313 Peptide methionine sulfoxide reductase MSRA/MSRB 1 2e-49
>1nwa_A Peptide methionine sulfoxide reductase MSRA; oxidoreductase, product complex, structural genomics, PSI, protein structure initiative; 1.50A {Mycobacterium tuberculosis} SCOP: d.58.28.1 Length = 203 Back     alignment and structure
 Score =  175 bits (445), Expect = 4e-56
 Identities = 52/139 (37%), Positives = 74/139 (53%), Gaps = 1/139 (0%)

Query: 43  LKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGDHAESVQVEYDPRVI 102
            + A+ A G FW  + +     GVV T VGY+GG+  N  +RN G HAE+V++ +DP V 
Sbjct: 25  NQKAILAGGCFWGLQDLIRNQPGVVSTRVGYSGGNIPNATYRNHGTHAEAVEIIFDPTVT 84

Query: 103 NFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKSK-SSI 161
           ++R LLE F+  HD      QG D G  YRS IF    ++ R+A  +    +        
Sbjct: 85  DYRTLLEFFFQIHDPTTKDRQGNDRGTSYRSAIFYFDEQQKRIALDTIADVEASGLWPGK 144

Query: 162 VTTQIQQLVAFYPAEPEHQ 180
           V T++     F+ AEPEHQ
Sbjct: 145 VVTEVSPAGDFWEAEPEHQ 163
>1ff3_A Peptide methionine sulfoxide reductase; alpha beta roll, PMSR, MSRA, oxidoreductase; 1.90A {Escherichia coli} SCOP: d.58.28.1 PDB: 2gt3_A 2iem_A Length = 211 Back     alignment and structure
>2j89_A Methionine sulfoxide reductase A; MSRA, poplar, oxidoreductase; 1.7A {Populus trichocarpa} Length = 261 Back     alignment and structure
>3bqh_A PILB, peptide methionine sulfoxide reductase MSRA/MSRB; methionine sulfoxide reductase A, oxidized form, elect transport; 1.95A {Neisseria meningitidis} PDB: 3bqe_A 3bqf_A* 3bqg_A Length = 193 Back     alignment and structure
>1fvg_A Peptide methionine sulfoxide reductase; oxidoreductase; 1.60A {Bos taurus} SCOP: d.58.28.1 PDB: 1fva_A 2l90_A* Length = 199 Back     alignment and structure
>3pim_A Peptide methionine sulfoxide reductase; methionine-S-sulfoxide reductase, oxidoreductase; 1.90A {Saccharomyces cerevisiae} PDB: 3pil_A 3pin_B Length = 187 Back     alignment and structure
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae} Length = 313 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query182
4gwb_A168 Peptide methionine sulfoxide reductase MSRA 3; str 100.0
3bqh_A193 PILB, peptide methionine sulfoxide reductase MSRA/ 100.0
1fvg_A199 Peptide methionine sulfoxide reductase; oxidoreduc 100.0
1ff3_A211 Peptide methionine sulfoxide reductase; alpha beta 100.0
2j89_A261 Methionine sulfoxide reductase A; MSRA, poplar, ox 100.0
1nwa_A203 Peptide methionine sulfoxide reductase MSRA; oxido 100.0
3pim_A187 Peptide methionine sulfoxide reductase; methionine 100.0
3e0m_A 313 Peptide methionine sulfoxide reductase MSRA/MSRB 1 100.0
3dxs_X74 Copper-transporting ATPase RAN1; CXXC motif, ferre 96.22
1p6t_A151 Potential copper-transporting ATPase; COPA, P-type 95.69
1cpz_A68 Protein (COPZ); copper chaperone, metal transport, 95.62
1osd_A72 MERP, hypothetical protein MERP; mercury resistanc 95.52
1opz_A76 Potential copper-transporting ATPase; mutation, fo 95.15
2l3m_A71 Copper-ION-binding protein; structural genomics, c 95.12
2g9o_A90 Copper-transporting ATPase 1; menkes disease, solu 95.11
2ldi_A71 Zinc-transporting ATPase; metal homeostasis, metal 95.06
1q8l_A84 Copper-transporting ATPase 1; metal binding protei 94.9
1yjr_A75 Copper-transporting ATPase 1; metallochaperone, pr 94.84
1kvi_A79 Copper-transporting ATPase 1; menkes, Cu-protein, 94.84
2qif_A69 Copper chaperone COPZ; tetranuclear Cu(I) cluster; 94.76
3cjk_B75 Copper-transporting ATPase 1; HAH1, ATP7B, menkes 94.7
1y3j_A77 Copper-transporting ATPase 1; ferrodoxin-like fold 94.66
2ofg_X111 Zinc-transporting ATPase; ferredoxin-like fold, be 94.65
2ew9_A149 Copper-transporting ATPase 2; copper trafficking, 94.43
1aw0_A72 Menkes copper-transporting ATPase; copper-binding 94.21
4a4j_A69 Pacszia, cation-transporting ATPase PACS; hydrolas 94.05
2xmw_A71 PACS-N, cation-transporting ATPase PACS; hydrolase 93.97
2kt2_A69 Mercuric reductase; nmera, MERA, HMA domain, mercu 93.61
1yg0_A66 COP associated protein; open-faced beta-sandwich, 93.46
1jww_A80 Potential copper-transporting ATPase; beta-alpha-b 93.02
2rop_A202 Copper-transporting ATPase 2; wilson protein, mobi 92.42
2kkh_A95 Putative heavy metal transporter; zinc transport, 91.93
1mwy_A73 ZNTA; open-faced beta-sandwich fold, beta-alpha-be 90.96
1fvq_A72 Copper-transporting ATPase; APO-CCC2A, hydrolase; 90.78
2rop_A202 Copper-transporting ATPase 2; wilson protein, mobi 90.61
2ew9_A149 Copper-transporting ATPase 2; copper trafficking, 88.43
3j09_A 723 COPA, copper-exporting P-type ATPase A; copper tra 87.91
3fry_A73 Probable copper-exporting P-type ATPase A; transpo 86.51
3iwl_A68 Copper transport protein ATOX1; beta-alpha-beta-BE 81.81
2kwa_A101 Kinase A inhibitor; bacterial signal transduction, 80.95
>4gwb_A Peptide methionine sulfoxide reductase MSRA 3; structural genomics, protein structure initiative, nysgrc, R PSI-biology; 1.20A {Sinorhizobium meliloti} Back     alignment and structure
Probab=100.00  E-value=3.6e-68  Score=430.68  Aligned_cols=140  Identities=37%  Similarity=0.651  Sum_probs=134.5

Q ss_pred             ccEEEEcCCcccchhhhhcccCCeEEEeeeecCCCCCCCCccccCCceeEEEEEEcCCCCCHHHHHHHHHhcCCCCcCCC
Q 030161           43 LKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFG  122 (182)
Q Consensus        43 ~~~a~fagGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtY~~v~gH~EaV~V~yDp~~is~~~LL~~F~~~hdPt~~~~  122 (182)
                      .++|+||||||||+|+.|+++|||++|+|||+||+++||||++||+|+|+|+|+|||++|||++||++||++||||+.||
T Consensus         2 te~A~fagGCFWg~E~~f~~l~GV~~t~~GYagG~~~nPtY~~v~~HaE~V~V~yDp~~isy~~LL~~F~~~hDPT~~nr   81 (168)
T 4gwb_A            2 TKRAVLAGGCFWGMQDLIRKLPGVIETRVGYTGGDVPNATYRNHGTHAEGIEIIFDPERISYRRILELFFQIHDPTTKDR   81 (168)
T ss_dssp             CEEEEEEESCHHHHHHHHTTSTTEEEEEEEEESSSCTTCBTTBCTTCEEEEEEEECTTTCCHHHHHHHHHHHSCTTSTTE
T ss_pred             ceEEEEEccCccchHHHHhcCCCeEEEEEEcCCCcCCCCcccccCceEEEEEEEECCCCCCHHHHHHHHHhhcCCcCcCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCceeeeccCCHHHHHHHHHHHHHHHhhc-CCCceEEEEeeCCCcccCcccccCC
Q 030161          123 QGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMKS-KSSIVTTQIQQLVAFYPAEPEHQVL  182 (182)
Q Consensus       123 Qg~d~G~QYRSaIf~~~~~q~~~a~~~~~~~~~~~-~~~~i~TeI~p~~~Fy~AEeyHQ~Y  182 (182)
                      ||+|+|+||||+|||+|++|+++|+.+++++++.. ..++|+|+|+|+++||+||+|||+|
T Consensus        82 Qg~D~G~QYRS~If~~~~~Q~~~a~~~~~~l~~~~~~~~~IvTei~p~~~Fy~AE~yHQ~Y  142 (168)
T 4gwb_A           82 QGNDIGTSYRSAIYYVDDEQKRIAQETIADVEASGLWPGKVVTEVEPVRDFWEAEPEHQNY  142 (168)
T ss_dssp             ETTEESGGGCEEEEESSHHHHHHHHHHHHHHHHHTCSSSCCCCEEEECCCEEECCGGGTTH
T ss_pred             CCCCCCcCceEEEecCCHHHHHHHHHHHHHHHHcccCCCCEEEEEEecCCeeECHHHHHHH
Confidence            99999999999999999999999999988776653 4578999999999999999999998
>3bqh_A PILB, peptide methionine sulfoxide reductase MSRA/MSRB; methionine sulfoxide reductase A, oxidized form, elect transport; 1.95A {Neisseria meningitidis} PDB: 3bqe_A 3bqf_A* 3bqg_A Back     alignment and structure
>1fvg_A Peptide methionine sulfoxide reductase; oxidoreductase; 1.60A {Bos taurus} SCOP: d.58.28.1 PDB: 1fva_A 2l90_A* Back     alignment and structure
>1ff3_A Peptide methionine sulfoxide reductase; alpha beta roll, PMSR, MSRA, oxidoreductase; 1.90A {Escherichia coli} SCOP: d.58.28.1 PDB: 2gt3_A 2iem_A Back     alignment and structure
>2j89_A Methionine sulfoxide reductase A; MSRA, poplar, oxidoreductase; 1.7A {Populus trichocarpa} Back     alignment and structure
>1nwa_A Peptide methionine sulfoxide reductase MSRA; oxidoreductase, product complex, structural genomics, PSI, protein structure initiative; 1.50A {Mycobacterium tuberculosis} SCOP: d.58.28.1 Back     alignment and structure
>3pim_A Peptide methionine sulfoxide reductase; methionine-S-sulfoxide reductase, oxidoreductase; 1.90A {Saccharomyces cerevisiae} PDB: 3pil_A 3pin_B Back     alignment and structure
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae} Back     alignment and structure
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0 Back     alignment and structure
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A Back     alignment and structure
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1 Back     alignment and structure
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A Back     alignment and structure
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A Back     alignment and structure
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis} Back     alignment and structure
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A Back     alignment and structure
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP} Back     alignment and structure
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A Back     alignment and structure
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A Back     alignment and structure
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A Back     alignment and structure
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A Back     alignment and structure
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A Back     alignment and structure
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A Back     alignment and structure
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} Back     alignment and structure
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A Back     alignment and structure
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A Back     alignment and structure
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A Back     alignment and structure
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A Back     alignment and structure
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori} Back     alignment and structure
>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A Back     alignment and structure
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens} Back     alignment and structure
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana} Back     alignment and structure
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A Back     alignment and structure
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B Back     alignment and structure
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens} Back     alignment and structure
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} Back     alignment and structure
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus} Back     alignment and structure
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus} Back     alignment and structure
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A Back     alignment and structure
>2kwa_A Kinase A inhibitor; bacterial signal transduction, KIPI, histidine kinase inhibi bacillus subtilis, transferase inhibitor; NMR {Bacillus subtilis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 182
d1ff3a_211 d.58.28.1 (A:) Peptide methionine sulfoxide reduct 2e-33
d1nwaa_168 d.58.28.1 (A:) Peptide methionine sulfoxide reduct 4e-29
d1fvga_192 d.58.28.1 (A:) Peptide methionine sulfoxide reduct 1e-28
d2phcb284 d.74.5.1 (B:2-85) Uncharacterized protein PH0987 { 0.002
>d1ff3a_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Escherichia coli [TaxId: 562]} Length = 211 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Peptide methionine sulfoxide reductase
family: Peptide methionine sulfoxide reductase
domain: Peptide methionine sulfoxide reductase
species: Escherichia coli [TaxId: 562]

 Score =  115 bits (290), Expect = 2e-33
 Identities = 62/157 (39%), Positives = 80/157 (50%), Gaps = 15/157 (9%)

Query: 39  LGRPLKA-------AVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLG---- 87
            G  +         A+FA+G FW  E +F  L GV  T  GY GG   NP +R +     
Sbjct: 31  NGHSMTNVPDGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDT 90

Query: 88  DHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVFGQGPDVGNQYRSIIFTNGTEESRLAA 147
            HAE+V++ YDP VI++ QLL+VFW +HD  Q   QG D G QYRS I+    E+   A 
Sbjct: 91  GHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAAR 150

Query: 148 HSKEREQMK----SKSSIVTTQIQQLVAFYPAEPEHQ 180
            S ER Q           +TT+I     FY AE +HQ
Sbjct: 151 ASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQ 187
>d1nwaa_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 168 Back     information, alignment and structure
>d1fvga_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Cow (Bos taurus) [TaxId: 9913]} Length = 192 Back     information, alignment and structure
>d2phcb2 d.74.5.1 (B:2-85) Uncharacterized protein PH0987 {Pyrococcus horikoshii [TaxId: 53953]} Length = 84 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query182
d1nwaa_168 Peptide methionine sulfoxide reductase {Mycobacter 100.0
d1fvga_192 Peptide methionine sulfoxide reductase {Cow (Bos t 100.0
d1ff3a_211 Peptide methionine sulfoxide reductase {Escherichi 100.0
d1osda_72 Mercuric ion binding protein MerP {Ralstonia metal 97.45
d1cpza_68 Copper chaperone {Enterococcus hirae [TaxId: 1354] 97.37
d1kvja_79 Menkes copper-transporting ATPase {Human (Homo sap 97.31
d2aw0a_72 Menkes copper-transporting ATPase {Human (Homo sap 97.2
d1q8la_84 Menkes copper-transporting ATPase {Human (Homo sap 97.2
d1p6ta172 Potential copper-translocating P-type ATPase CopA 97.16
d1p6ta279 Potential copper-translocating P-type ATPase CopA 97.07
d2qifa169 Copper chaperone {Bacillus subtilis, CopZ [TaxId: 97.03
d2ggpb172 Copper transporter domain ccc2a {Baker's yeast (Sa 96.48
d2phcb284 Uncharacterized protein PH0987 {Pyrococcus horikos 93.05
d1mwza_73 Metal ion-transporting ATPase ZntA, N-terminal dom 91.48
d1qupa272 Copper chaperone for superoxide dismutase, N-termi 89.32
d1sb6a_64 Copper chaperone {Synechocystis sp. pcc 6803, Scat 88.72
>d1nwaa_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Peptide methionine sulfoxide reductase
family: Peptide methionine sulfoxide reductase
domain: Peptide methionine sulfoxide reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=2.2e-65  Score=412.48  Aligned_cols=141  Identities=37%  Similarity=0.591  Sum_probs=135.1

Q ss_pred             CccEEEEcCCcccchhhhhcccCCeEEEeeeecCCCCCCCCccccCCceeEEEEEEcCCCCCHHHHHHHHHhcCCCCcCC
Q 030161           42 PLKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGDHAESVQVEYDPRVINFRQLLEVFWTSHDCRQVF  121 (182)
Q Consensus        42 ~~~~a~fagGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtY~~v~gH~EaV~V~yDp~~is~~~LL~~F~~~hdPt~~~  121 (182)
                      ..++|+||||||||+|+.|+++|||++|+|||+||+++||||+++|+|+|||+|+|||++|||++||++||++||||+.|
T Consensus         5 ~~~~a~~agGCFWg~E~~f~~l~GV~~t~~GYagG~~~~PtY~~v~~H~E~V~V~yDp~~is~~~Ll~~ff~~hdPt~~~   84 (168)
T d1nwaa_           5 SNQKAILAGGCFWGLQDLIRNQPGVVSTRVGYSGGNIPNATYRNHGTHAEAVEIIFDPTVTDYRTLLEFFFQIHDPTTKD   84 (168)
T ss_dssp             CCEEEEEEESCHHHHHHHHTTSTTEEEEEEEEESSSCSSCCSSCCTTCEEEEEEEECTTTCCHHHHHHHHHHHSCTTSTT
T ss_pred             ccceEEEEcCCccccHHHHhcCCCEEEEEeeecccCCCCceeecccccceEEEEEEecccccHHHHHHHHHHhcCCcccc
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCceeeeccCCHHHHHHHHHHHHHHHhh-cCCCceEEEEeeCCCcccCcccccCC
Q 030161          122 GQGPDVGNQYRSIIFTNGTEESRLAAHSKEREQMK-SKSSIVTTQIQQLVAFYPAEPEHQVL  182 (182)
Q Consensus       122 ~Qg~d~G~QYRSaIf~~~~~q~~~a~~~~~~~~~~-~~~~~i~TeI~p~~~Fy~AEeyHQ~Y  182 (182)
                      |||+|+|+||||+||++|++|+++|+.+++++++. ....+|+|+|+|+++||+||+|||+|
T Consensus        85 ~Qg~D~G~QYRS~If~~~~~Q~~~a~~~i~~~~~~~~~~~~IvTeI~~~~~F~~AEeyHQ~Y  146 (168)
T d1nwaa_          85 RQGNDRGTSYRSAIFYFDEQQKRIALDTIADVEASGLWPGKVVTEVSPAGDFWEAEPEHQDY  146 (168)
T ss_dssp             EETTEESGGGCEEEEESSHHHHHHHHHHHHHHHHHCCSSSCCCCEEEECCCEEECCGGGTTH
T ss_pred             ccCCCCCccceeeEEeeccchHHHHHHHHHHHHHhhccCCceEEEEeccCCEEEcHHHHHHH
Confidence            99999999999999999999999999988877765 34678999999999999999999998
>d1fvga_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ff3a_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]} Back     information, alignment and structure
>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId: 1354]} Back     information, alignment and structure
>d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2aw0a_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q8la_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1p6ta2 d.58.17.1 (A:73-151) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis, CopZ [TaxId: 1423]} Back     information, alignment and structure
>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2phcb2 d.74.5.1 (B:2-85) Uncharacterized protein PH0987 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide dismutase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sb6a_ d.58.17.1 (A:) Copper chaperone {Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]} Back     information, alignment and structure