Citrus Sinensis ID: 030237

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-
Protein Sequence
MEVIPHSQRGIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAEQGEGEVNDSDCGTAAHTDNELVSFSNDDDSALISEH
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEHHHHHHHHHcccccccEcccccccccccccccccccccccccccEEEccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccHccccccHEEcccccccccccc
Coil and Loop (DISEMBL)
meviphsqrgiadypakctqpqraaSLDRFRQKRKERCFDKKVRYSVRQEVALRMQRnkgqftsakkceggalgwsnaqdpgqddspsetscthcgisskstpmmrrgpsgprslcnacglfwankGALRDlgkkmedqpltpaeqgegevndsdcgtaahtdnelvsfsndddsaliseh
Flexible Loop (DISEMBL)
meviphsqrgiadypakctqpqraasldrfrqkrkercfdkkvrysvRQEVAlrmqrnkgqftsakkceggaLGWSNAQDPGQDDSPSETSCTHcgisskstpmmrRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAEQGEGEVNDSDCGTAAHTdnelvsfsndddsaliseh
Low Complexity Region (SEG)
MEVIPHSQRGIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAEQGEGEVNDSDCGTAAHTDNELVSFSNDDDSALISEH
Disordered region (IsUnstruct)
**************************************FDKKVRYSV*******************************************************************LCNACGLFWANKGALR***************************************************
Disordered Region (DISOPRED)
*******************************************************************CEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWA*********************************************************
Disordered Region (DISEMBL)
********RGIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKCEGGALGWSNA*****************GISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLT************DCGTAAHTDNELVSFSNDDDSALISEH
Disordered Region (DISPRO)
****************KCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRM*********************************ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGA*****************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEVIPHSQRGIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAEQGEGEVNDSDCGTAAHTDNELVSFSNDDDSALISEH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	181	2.2.26 [Sep-21-2011]
Q9LRH6	309	GATA transcription factor	yes	no	0.928	0.543	0.564	3e-51
Q8H1G0	302	GATA transcription factor	no	no	0.718	0.430	0.592	7e-39
Q8GXL7	297	GATA transcription factor	no	no	0.690	0.420	0.598	7e-38
Q93WK5	727	Two-component response re	no	no	0.232	0.057	0.595	3e-07
Q8L500	468	Two-component response re	no	no	0.259	0.100	0.531	6e-07
Q689G9	518	Two-component response re	no	no	0.232	0.081	0.595	7e-07
Q689G6	623	Two-component response re	no	no	0.232	0.067	0.571	1e-06
Q6LA42	558	Two-component response re	no	no	0.232	0.075	0.547	3e-06
Q9LVG4	495	Two-component response re	no	no	0.226	0.082	0.585	4e-06
B0G188	695	GATA zinc finger domain-c	yes	no	0.193	0.050	0.567	8e-06

>sp|Q9LRH6|GAT25_ARATH GATA transcription factor 25 OS=Arabidopsis thaliana GN=GATA25 PE=2 SV=2

 Score =  201 bits (510), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 101/179 (56%), Positives = 122/179 (68%), Gaps = 11/179 (6%)

Query: 11  IADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKCEG 70
           + +Y ++C+ PQRA SLDRFR+KR  RCF+KKVRY VRQEVALRM RNKGQFTS+K  +G
Sbjct: 134 VVEYQSRCSLPQRAQSLDRFRKKRNARCFEKKVRYGVRQEVALRMARNKGQFTSSKMTDG 193

Query: 71  GALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALR 130
            A      QD  QDD+  E SCTHCGISSK TPMMRRGPSGPR+LCNACGLFWAN+G LR
Sbjct: 194 -AYNSGTDQDSAQDDAHPEISCTHCGISSKCTPMMRRGPSGPRTLCNACGLFWANRGTLR 252

Query: 131 DLGKKMEDQPLTPAEQGEG--------EVNDSDCGTAAHTDNELVSFSNDDDSALISEH 181
           DL KK E+  L   +  +G         +N        HT   +VS +N D+S L+ +H
Sbjct: 253 DLSKKTEENQLALMKPDDGGSVADAANNLNTEAASVEEHT--SMVSLANGDNSNLLGDH 309

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8H1G0|GAT28_ARATH GATA transcription factor 28 OS=Arabidopsis thaliana GN=GATA28 PE=2 SV=1

 Score =  159 bits (403), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 83/140 (59%), Positives = 97/140 (69%), Gaps = 10/140 (7%)

Query: 5   PHSQRGIADYPA---KCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQ 61
           PH    ++  P    + + PQR ASL RFR+KRK R FDKK+RY+VR+EVALRMQRNKGQ
Sbjct: 126 PHQNNRVSSLPGTPQRFSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRNKGQ 185

Query: 62  FTSAKKC--EGGALG--WSNAQDPGQDDSPS---ETSCTHCGISSKSTPMMRRGPSGPRS 114
           FTSAK    E  + G  W + Q    + S +   E SC HCGI  KSTPMMRRGP+GPR+
Sbjct: 186 FTSAKSNNDEAASAGSSWGSNQTWAIESSEAQHQEISCRHCGIGEKSTPMMRRGPAGPRT 245

Query: 115 LCNACGLFWANKGALRDLGK 134
           LCNACGL WANKGA RDL K
Sbjct: 246 LCNACGLMWANKGAFRDLSK 265

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXL7|GAT24_ARATH GATA transcription factor 24 OS=Arabidopsis thaliana GN=GATA24 PE=2 SV=2

 Score =  156 bits (394), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 79/132 (59%), Positives = 92/132 (69%), Gaps = 7/132 (5%)

Query: 10  GIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKC- 68
           G++  P + + PQR ASL RFR+KRK R FDK +RY+VR+EVALRMQR KGQFTSAK   
Sbjct: 130 GLSGTPQRLSVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQFTSAKSSN 189

Query: 69  -EGGALG--WSNAQD---PGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLF 122
            + G+ G  W + Q     G +    E  C HCG S KSTPMMRRGP GPR+LCNACGL 
Sbjct: 190 DDSGSTGSDWGSNQSWAVEGTETQKPEVLCRHCGTSEKSTPMMRRGPDGPRTLCNACGLM 249

Query: 123 WANKGALRDLGK 134
           WANKG LRDL K
Sbjct: 250 WANKGTLRDLSK 261

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WK5|APRR7_ARATH Two-component response regulator-like APRR7 OS=Arabidopsis thaliana GN=APRR7 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 32/42 (76%)

Query: 22  QRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFT 63
           QR A+L +FRQKRKERCF KKVRY  R+++A +  R +GQF 
Sbjct: 668 QREAALTKFRQKRKERCFRKKVRYQSRKKLAEQRPRVRGQFV 709

Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of APRR9, APRR7, APRR5, APRR3 and APPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L500|APRR9_ARATH Two-component response regulator-like APRR9 OS=Arabidopsis thaliana GN=APRR9 PE=2 SV=2

 Score = 53.9 bits (128), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 35/47 (74%)

Query: 17  KCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFT 63
           + ++ QR A+L +FR KRK+RCFDKKVRY  R+++A +  R KGQF 
Sbjct: 411 RWSRSQREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFV 457

Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of APRR9, APRR7, APRR5, APRR3 and APPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Arabidopsis thaliana (taxid: 3702)

>sp|Q689G9|PRR1_ORYSJ Two-component response regulator-like PRR1 OS=Oryza sativa subsp. japonica GN=PRR1 PE=2 SV=2

 Score = 53.5 bits (127), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 32/42 (76%)

Query: 22  QRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFT 63
           +RAA+L +FR KRKERCFDKKVRY  R+++A    R +GQF 
Sbjct: 442 RRAAALAKFRLKRKERCFDKKVRYVNRKKLAETRPRVRGQFV 483

Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of PRR73, PRR37, PRR95, PRR59 and PPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q689G6|PRR95_ORYSJ Two-component response regulator-like PRR95 OS=Oryza sativa subsp. japonica GN=PRR95 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 32/42 (76%)

Query: 22  QRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFT 63
           QR A+L++FR KRK+RCF+KKVRY  R+ +A +  R KGQF 
Sbjct: 573 QREAALNKFRLKRKDRCFEKKVRYQSRKLLAEQRPRVKGQFV 614

Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of PRR73, PRR37, PRR95, PRR59 and PPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6LA42|APRR5_ARATH Two-component response regulator-like APRR5 OS=Arabidopsis thaliana GN=APRR5 PE=1 SV=2

 Score = 51.6 bits (122), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/42 (54%), Positives = 32/42 (76%)

Query: 22  QRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFT 63
           QR A+L +FR KRK+RC++KKVRY  R+++A +  R KGQF 
Sbjct: 508 QREAALTKFRMKRKDRCYEKKVRYESRKKLAEQRPRIKGQFV 549

Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of APRR9, APRR7, APRR5, APRR3 and APPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVG4|APRR3_ARATH Two-component response regulator-like APRR3 OS=Arabidopsis thaliana GN=APRR3 PE=1 SV=1

 Score = 51.2 bits (121), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/41 (58%), Positives = 31/41 (75%)

Query: 22  QRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQF 62
           QR A+L +FR KRKERCF+KKVRY  R+++A +    KGQF
Sbjct: 441 QREAALMKFRLKRKERCFEKKVRYHSRKKLAEQRPHVKGQF 481

Controls photoperiodic flowering response. Component of the circadian clock. Controls the degradation of APRR1/TOC1 by the SCF(ZTL) complex. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of APRR9, APRR7, APRR5, APRR3 and APPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Arabidopsis thaliana (taxid: 3702)

>sp|B0G188|GTAP_DICDI GATA zinc finger domain-containing protein 16 OS=Dictyostelium discoideum GN=gtaP PE=4 SV=1

 Score = 50.1 bits (118), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 21/37 (56%), Positives = 28/37 (75%), Gaps = 2/37 (5%)

Query: 88  SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWA 124
           +E SC  CG+++  TP  RRGP+G ++LCNACGL WA
Sbjct: 475 TELSCHTCGVTN--TPEWRRGPNGAKTLCNACGLAWA 509

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
224084544	288	predicted protein [Populus trichocarpa]	0.988	0.621	0.745	1e-73
225459060	294	PREDICTED: GATA transcription factor 25	0.988	0.608	0.683	3e-70
302142081	248	unnamed protein product [Vitis vinifera]	0.994	0.725	0.679	3e-70
224067118	290	predicted protein [Populus trichocarpa]	0.994	0.620	0.685	6e-68
449469795	293	PREDICTED: GATA transcription factor 25-	0.994	0.614	0.659	2e-62
356552974	307	PREDICTED: GATA transcription factor 25-	0.944	0.557	0.7	7e-62
356498865	310	PREDICTED: GATA transcription factor 25-	0.950	0.554	0.683	9e-59
302398803	306	GATA domain class transcription factor [	0.972	0.575	0.640	9e-58
363808184	286	uncharacterized protein LOC100784789 [Gl	0.850	0.538	0.681	5e-55
255572876	324	GATA transcription factor, putative [Ric	0.701	0.391	0.782	1e-53

>gi|224084544|ref|XP_002307332.1| predicted protein [Populus trichocarpa] gi|222856781|gb|EEE94328.1| predicted protein [Populus trichocarpa]

 Score =  281 bits (718), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 135/181 (74%), Positives = 148/181 (81%), Gaps = 2/181 (1%)

Query: 1   MEVIPHSQRGIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKG 60
           +E+ P +QRG+ DYP++CTQPQRAASL RFRQKRKERCFDKKVRY VRQEVALRMQRNKG
Sbjct: 110 LEMTPQNQRGVVDYPSRCTQPQRAASLSRFRQKRKERCFDKKVRYGVRQEVALRMQRNKG 169

Query: 61  QFTSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACG 120
           QFTSAKK EGG  GW   QD G DDS  ETSCTHCG +SKSTPMMRRGPSGPRSLCNACG
Sbjct: 170 QFTSAKKSEGG-YGWDGVQDSGLDDSQQETSCTHCGTNSKSTPMMRRGPSGPRSLCNACG 228

Query: 121 LFWANKGALRDLGKKMEDQPLTPAEQGEGEVNDSDCGTAAHTDNELVSFSNDDDSALISE 180
           LFWAN+G LRDL KK  D   T  EQGE E NDSD GTA  TDN LV+++N  D+ALI+E
Sbjct: 229 LFWANRGTLRDLTKKT-DHSATLIEQGEAEANDSDSGTAIDTDNNLVTYANGGDTALITE 287

Query: 181 H 181
           H
Sbjct: 288 H 288

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459060|ref|XP_002283753.1| PREDICTED: GATA transcription factor 25 [Vitis vinifera]

 Score =  270 bits (689), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 123/180 (68%), Positives = 146/180 (81%), Gaps = 1/180 (0%)

Query: 1   MEVIPHSQRGIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKG 60
           ME++P +QR + D+P    QP RAASL+RFRQKRKERCFDKK+RY+VRQEVALRMQRNKG
Sbjct: 115 MEIVPQNQRALTDFPGPYNQPHRAASLNRFRQKRKERCFDKKIRYNVRQEVALRMQRNKG 174

Query: 61  QFTSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACG 120
           QF+S+KK EG    W + QD GQD+SP ET CTHCG SSKSTPMMRRGP+GPRSLCNACG
Sbjct: 175 QFSSSKKSEG-TFSWDSVQDSGQDESPPETLCTHCGTSSKSTPMMRRGPTGPRSLCNACG 233

Query: 121 LFWANKGALRDLGKKMEDQPLTPAEQGEGEVNDSDCGTAAHTDNELVSFSNDDDSALISE 180
           LFWAN+G+LRDL KK +D  L   E+G+GE NDSDCGT+ + +N  V+FSN D+ ALI E
Sbjct: 234 LFWANRGSLRDLSKKNQDHSLNQIERGDGEANDSDCGTSGYINNNHVAFSNSDNPALIPE 293

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142081|emb|CBI19284.3| unnamed protein product [Vitis vinifera]

 Score =  270 bits (689), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 123/181 (67%), Positives = 146/181 (80%), Gaps = 1/181 (0%)

Query: 1   MEVIPHSQRGIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKG 60
           ME++P +QR + D+P    QP RAASL+RFRQKRKERCFDKK+RY+VRQEVALRMQRNKG
Sbjct: 69  MEIVPQNQRALTDFPGPYNQPHRAASLNRFRQKRKERCFDKKIRYNVRQEVALRMQRNKG 128

Query: 61  QFTSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACG 120
           QF+S+KK EG    W + QD GQD+SP ET CTHCG SSKSTPMMRRGP+GPRSLCNACG
Sbjct: 129 QFSSSKKSEG-TFSWDSVQDSGQDESPPETLCTHCGTSSKSTPMMRRGPTGPRSLCNACG 187

Query: 121 LFWANKGALRDLGKKMEDQPLTPAEQGEGEVNDSDCGTAAHTDNELVSFSNDDDSALISE 180
           LFWAN+G+LRDL KK +D  L   E+G+GE NDSDCGT+ + +N  V+FSN D+ ALI E
Sbjct: 188 LFWANRGSLRDLSKKNQDHSLNQIERGDGEANDSDCGTSGYINNNHVAFSNSDNPALIPE 247

Query: 181 H 181
            
Sbjct: 248 Q 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067118|ref|XP_002302364.1| predicted protein [Populus trichocarpa] gi|222844090|gb|EEE81637.1| predicted protein [Populus trichocarpa]

 Score =  261 bits (668), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 124/181 (68%), Positives = 143/181 (79%), Gaps = 1/181 (0%)

Query: 1   MEVIPHSQRGIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKG 60
           +E+ P +QRG+ +YP +CTQPQRAASL RFRQKRKERCFDKKVRY VRQEVALRMQRNKG
Sbjct: 111 LELTPQNQRGVGEYPPRCTQPQRAASLSRFRQKRKERCFDKKVRYGVRQEVALRMQRNKG 170

Query: 61  QFTSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACG 120
           QFTSAKK EGG  GW   QD  QDDS  ETSCTHCG +SKSTPMMRRGPSGPRSLCNACG
Sbjct: 171 QFTSAKKSEGG-YGWDGGQDSAQDDSQHETSCTHCGTNSKSTPMMRRGPSGPRSLCNACG 229

Query: 121 LFWANKGALRDLGKKMEDQPLTPAEQGEGEVNDSDCGTAAHTDNELVSFSNDDDSALISE 180
           LFWAN+G LRD  KK  +  + P + GE E N+SD   A +T N  V+++N  D+ALI++
Sbjct: 230 LFWANRGTLRDHSKKALEHSVAPIDLGETEANESDSVPAINTHNNPVTYANGGDTALITD 289

Query: 181 H 181
           H
Sbjct: 290 H 290

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469795|ref|XP_004152604.1| PREDICTED: GATA transcription factor 25-like [Cucumis sativus] gi|449511422|ref|XP_004163952.1| PREDICTED: GATA transcription factor 25-like [Cucumis sativus]

 Score =  243 bits (620), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 120/182 (65%), Positives = 144/182 (79%), Gaps = 2/182 (1%)

Query: 1   MEVIPHSQRGIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKG 60
           ++++  +QR   D P + +QPQRAASL+RFRQKRKERCF+KKVRY VRQEVALRMQRNKG
Sbjct: 113 VDLVNPNQRNALDLPGRSSQPQRAASLNRFRQKRKERCFEKKVRYGVRQEVALRMQRNKG 172

Query: 61  QFTSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACG 120
           QFTS+KK +G +    N  + GQD+SPSETSCT+CGISS STPMMRRGPSGPRSLCNACG
Sbjct: 173 QFTSSKKLDG-SYSHGNVSELGQDESPSETSCTNCGISSMSTPMMRRGPSGPRSLCNACG 231

Query: 121 LFWANKGALRDLGKKMEDQPLTPAEQGEGE-VNDSDCGTAAHTDNELVSFSNDDDSALIS 179
           LFWAN+G LRDL K+ +D P+TPAEQ E +   D DC    H  + LVSFSN D +AL++
Sbjct: 232 LFWANRGTLRDLPKRSQDHPVTPAEQCESDGGKDLDCRHGNHAPSNLVSFSNGDTAALMA 291

Query: 180 EH 181
           EH
Sbjct: 292 EH 293

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552974|ref|XP_003544834.1| PREDICTED: GATA transcription factor 25-like [Glycine max]

 Score =  241 bits (616), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 126/180 (70%), Positives = 143/180 (79%), Gaps = 9/180 (5%)

Query: 6   HSQRGIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSA 65
           H+QRG  ++P KC+ P RAASL RFRQKRKERCFDKKVRYSVRQEVALRM RNKGQFTS+
Sbjct: 123 HNQRGSMEFP-KCSLPHRAASLHRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSS 181

Query: 66  KKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWAN 125
           KK + GA  +   QD GQDDS SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWAN
Sbjct: 182 KK-QDGANSYGTDQDSGQDDSQSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWAN 240

Query: 126 KGALRDLGKKMEDQPLTPAEQGEGEVNDSDCGTA----AHTDNELVSFSNDDDSALISEH 181
           +GALRDL K+ ++  L P EQ + E NDSDC TA    AH  N L +FS  D+ AL+++H
Sbjct: 241 RGALRDLSKRNQEHSLPPVEQVD-EGNDSDCRTATADPAH--NNLPAFSEHDNPALVADH 297

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498865|ref|XP_003518268.1| PREDICTED: GATA transcription factor 25-like [Glycine max]

 Score =  231 bits (589), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 121/177 (68%), Positives = 138/177 (77%), Gaps = 5/177 (2%)

Query: 6   HSQRGIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSA 65
            +QRG  ++P KC+ PQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRM RNKGQFTS+
Sbjct: 126 QNQRGSMEFP-KCSLPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSS 184

Query: 66  KKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWAN 125
           KK + GA  +   QD GQDDS SETSC HCG SSKSTPMMRRGPSGPRSLCNACGLFWAN
Sbjct: 185 KK-QDGANSYGTDQDSGQDDSQSETSCKHCGTSSKSTPMMRRGPSGPRSLCNACGLFWAN 243

Query: 126 KGALRDLGKKMEDQPLTPAEQGEGEVNDSDCGTAAH--TDNELVSFSNDDDSALISE 180
           +GALRDL K+ ++  L P EQ +G  ND DC TAA     N L +FS   + AL+++
Sbjct: 244 RGALRDLSKRNQEHSLPPVEQVDGG-NDPDCRTAAADPAQNNLAAFSEPVNPALVAD 299

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398803|gb|ADL36696.1| GATA domain class transcription factor [Malus x domestica]

 Score =  228 bits (580), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 116/181 (64%), Positives = 138/181 (76%), Gaps = 5/181 (2%)

Query: 2   EVIPHSQRGIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQ 61
           E+   +QR + DYP +C+QP RAASL RFRQKRKERCFDKKVRY VRQEVALRMQRNKGQ
Sbjct: 130 ELASQNQRAMEDYP-RCSQPHRAASLIRFRQKRKERCFDKKVRYGVRQEVALRMQRNKGQ 188

Query: 62  FTSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGL 121
           F+S+K+ +G +  WS  Q+ GQ+D  +ETSC HCGISSKSTPMMRRGPSGPRSLCNACGL
Sbjct: 189 FSSSKRSDGDS-NWSAGQESGQEDCHAETSCKHCGISSKSTPMMRRGPSGPRSLCNACGL 247

Query: 122 FWANKGALRDLGKKMEDQPLTPAEQ-GEGEVNDSDCGTAAHTDNELVSFSNDDDSALISE 180
           FWAN+G LR+L K+  D  +   EQ GE +  D D  T     N LV FSN D+SAL++E
Sbjct: 248 FWANRGGLRELSKRSHD--IKRIEQGGEPDTKDLDSVTTIDAHNNLVPFSNGDNSALVAE 305

Query: 181 H 181
           +
Sbjct: 306 N 306

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808184|ref|NP_001242484.1| uncharacterized protein LOC100784789 [Glycine max] gi|255641630|gb|ACU21087.1| unknown [Glycine max]

 Score =  219 bits (557), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 107/157 (68%), Positives = 122/157 (77%), Gaps = 3/157 (1%)

Query: 2   EVIPHSQRGIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQ 61
           E+   +Q G  +YPAKC+ PQRAASL+RFRQKRKERCFDKKVRYSVRQEVALRM RN+GQ
Sbjct: 114 ELSSQNQTGEEEYPAKCSLPQRAASLNRFRQKRKERCFDKKVRYSVRQEVALRMHRNRGQ 173

Query: 62  FTSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGL 121
           FTS+K  + G   W + Q+ GQD   SET CTHCGISSKSTPMMRRGPSGPRSLCNACGL
Sbjct: 174 FTSSKN-QDGTNSWGSDQESGQDAVQSETLCTHCGISSKSTPMMRRGPSGPRSLCNACGL 232

Query: 122 FWANKGALRDLGKKMEDQPLTPAEQGE--GEVNDSDC 156
           FWAN+G LRDL K+ ++  L P EQ +     ND DC
Sbjct: 233 FWANRGTLRDLSKRNQEHSLAPPEQVDEGSNNNDFDC 269

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572876|ref|XP_002527370.1| GATA transcription factor, putative [Ricinus communis] gi|223533289|gb|EEF35042.1| GATA transcription factor, putative [Ricinus communis]

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 101/129 (78%), Positives = 110/129 (85%), Gaps = 2/129 (1%)

Query: 1   MEVIPHSQR-GIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNK 59
           +EV   +QR  + DYP +CTQPQRAASL+RFRQKRKER FDKKVRYSVRQEVALRMQRNK
Sbjct: 119 LEVASQNQRSAVVDYPGRCTQPQRAASLNRFRQKRKERNFDKKVRYSVRQEVALRMQRNK 178

Query: 60  GQFTSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNAC 119
           GQFTS+KK +G   GW   QD GQDDS  ETSCTHCG SSKSTPMMRRGPSGPRSLCNAC
Sbjct: 179 GQFTSSKKSDG-TYGWGGGQDSGQDDSQQETSCTHCGTSSKSTPMMRRGPSGPRSLCNAC 237

Query: 120 GLFWANKGA 128
           GLFWAN+G+
Sbjct: 238 GLFWANRGS 246

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
TAIR|locus:2017582	302	ZML2 "ZIM-LIKE 2" [Arabidopsis	0.718	0.430	0.592	4.9e-37
TAIR|locus:505006360	297	ZML1 "ZIM-like 1" [Arabidopsis	0.756	0.461	0.563	8e-37
CGD|CAL0003020	688	GAT1 [Candida albicans (taxid:	0.734	0.193	0.285	2.6e-08
UNIPROTKB|Q5A432	688	GAT1 "Putative uncharacterized	0.734	0.193	0.285	2.6e-08
TAIR|locus:2062749	183	AT2G46670 "AT2G46670" [Arabido	0.243	0.240	0.568	1.2e-07
CGD|CAL0005605	442	orf19.1577 [Candida albicans (	0.331	0.135	0.430	3.9e-07
UNIPROTKB|Q5ALK1	442	CaO19.1577 "Putative uncharact	0.331	0.135	0.430	3.9e-07
TAIR|locus:2083388	149	GATA15 "GATA transcription fac	0.276	0.335	0.454	1.3e-06
TAIR|locus:2044376	468	PRR9 "pseudo-response regulato	0.243	0.094	0.568	2.9e-06
TAIR|locus:2151206	727	PRR7 "pseudo-response regulato	0.226	0.056	0.609	5.5e-06

TAIR|locus:2017582 ZML2 "ZIM-LIKE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 83/140 (59%), Positives = 97/140 (69%)

Query:     5 PHSQRGIADYPA---KCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQ 61
             PH    ++  P    + + PQR ASL RFR+KRK R FDKK+RY+VR+EVALRMQRNKGQ
Sbjct:   126 PHQNNRVSSLPGTPQRFSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRNKGQ 185

Query:    62 FTSAKKC--EGGALG--WSNAQDPGQDDSPS---ETSCTHCGISSKSTPMMRRGPSGPRS 114
             FTSAK    E  + G  W + Q    + S +   E SC HCGI  KSTPMMRRGP+GPR+
Sbjct:   186 FTSAKSNNDEAASAGSSWGSNQTWAIESSEAQHQEISCRHCGIGEKSTPMMRRGPAGPRT 245

Query:   115 LCNACGLFWANKGALRDLGK 134
             LCNACGL WANKGA RDL K
Sbjct:   246 LCNACGLMWANKGAFRDLSK 265

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:505006360 ZML1 "ZIM-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 84/149 (56%), Positives = 97/149 (65%)

Query:     5 PHSQR---GIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQ 61
             PH      G++  P + + PQR ASL RFR+KRK R FDK +RY+VR+EVALRMQR KGQ
Sbjct:   122 PHQNNRVLGLSGTPQRLSVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQ 181

Query:    62 FTSAKKC--EGGALG--WSNAQD---PGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRS 114
             FTSAK    + G+ G  W + Q     G +    E  C HCG S KSTPMMRRGP GPR+
Sbjct:   182 FTSAKSSNDDSGSTGSDWGSNQSWAVEGTETQKPEVLCRHCGTSEKSTPMMRRGPDGPRT 241

Query:   115 LCNACGLFWANKGALRDLGKKMEDQPLTP 143
             LCNACGL WANKG LRDL K     P TP
Sbjct:   242 LCNACGLMWANKGTLRDLSKV--PPPQTP 268

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

CGD|CAL0003020 GAT1 [Candida albicans (taxid:5476)]

 Score = 138 (53.6 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 42/147 (28%), Positives = 68/147 (46%)

Query:    31 RQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKCEGGALGWSNAQDPGQDDSPSET 90
             + KRK     K  + +   E  +    + G   + K     + G   A  P    S +  
Sbjct:   383 KSKRKST-ITKSKKKAASPETTIT---STGSTITTKSTNSNSTGKGTATGPAA--SNTGV 436

Query:    91 SCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAEQGEGE 150
             SCT+CG  +K+TP+ RR P G + LCNACGLF    G +R L  K +   +   ++G   
Sbjct:   437 SCTNCG--TKTTPLWRRNPQG-QPLCNACGLFLKLHGVVRPLSLKTD--VIKKRQRGNNN 491

Query:   151 VNDSDCGTAAHTDN---ELVSFSNDDD 174
              + +  GT  +++N   + +S  N+ D
Sbjct:   492 GSGNSSGTTNNSNNYNNKSISKKNEID 518

GO:0009405 "pathogenesis" evidence=IMP

GO:0006808 "regulation of nitrogen utilization" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IMP

GO:0001080 "nitrogen catabolite activation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0001076 "RNA polymerase II transcription factor binding transcription factor activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IEA

UNIPROTKB|Q5A432 GAT1 "Putative uncharacterized protein GAT1" [Candida albicans SC5314 (taxid:237561)]

 Score = 138 (53.6 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 42/147 (28%), Positives = 68/147 (46%)

Query:    31 RQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKCEGGALGWSNAQDPGQDDSPSET 90
             + KRK     K  + +   E  +    + G   + K     + G   A  P    S +  
Sbjct:   383 KSKRKST-ITKSKKKAASPETTIT---STGSTITTKSTNSNSTGKGTATGPAA--SNTGV 436

Query:    91 SCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAEQGEGE 150
             SCT+CG  +K+TP+ RR P G + LCNACGLF    G +R L  K +   +   ++G   
Sbjct:   437 SCTNCG--TKTTPLWRRNPQG-QPLCNACGLFLKLHGVVRPLSLKTD--VIKKRQRGNNN 491

Query:   151 VNDSDCGTAAHTDN---ELVSFSNDDD 174
              + +  GT  +++N   + +S  N+ D
Sbjct:   492 GSGNSSGTTNNSNNYNNKSISKKNEID 518

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IMP

GO:0006808 "regulation of nitrogen utilization" evidence=IMP

GO:0009405 "pathogenesis" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

TAIR|locus:2062749 AT2G46670 "AT2G46670" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query:    19 TQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQF 62
             ++ QR A+L +FR KRK+RCFDKKVRY  R+++A +  R KGQF
Sbjct:   128 SRSQREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQF 171

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

CGD|CAL0005605 orf19.1577 [Candida albicans (taxid:5476)]

 Score = 130 (50.8 bits), Expect = 3.9e-07, P = 3.9e-07
 Identities = 28/65 (43%), Positives = 39/65 (60%)

Query:    89 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAEQGE 148
             E +C HC   S+ TP  RRGP G R+LCNACGLF++    ++  G +  D+ +   +Q  
Sbjct:   379 EITCQHC--CSQETPEWRRGPEGSRTLCNACGLFYSK--LIKKYGLREADKVMLHRKQ-T 433

Query:   149 GEVND 153
             G VND
Sbjct:   434 GTVND 438

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q5ALK1 CaO19.1577 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 130 (50.8 bits), Expect = 3.9e-07, P = 3.9e-07
 Identities = 28/65 (43%), Positives = 39/65 (60%)

Query:    89 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAEQGE 148
             E +C HC   S+ TP  RRGP G R+LCNACGLF++    ++  G +  D+ +   +Q  
Sbjct:   379 EITCQHC--CSQETPEWRRGPEGSRTLCNACGLFYSK--LIKKYGLREADKVMLHRKQ-T 433

Query:   149 GEVND 153
             G VND
Sbjct:   434 GTVND 438

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2083388 GATA15 "GATA transcription factor 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 25/55 (45%), Positives = 33/55 (60%)

Query:    86 SPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDL-GKKMEDQ 139
             S  + SC  CG S   TP+ R GP+GP+SLCNACG+   N+   R L   + ED+
Sbjct:    37 SNEKKSCAICGTSK--TPLWRGGPAGPKSLCNACGI--RNRKKRRTLISNRSEDK 87

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2044376 PRR9 "pseudo-response regulator 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 2.9e-06, P = 2.9e-06
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query:    19 TQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQF 62
             ++ QR A+L +FR KRK+RCFDKKVRY  R+++A +  R KGQF
Sbjct:   413 SRSQREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQF 456

GO:0000156 "phosphorelay response regulator activity" evidence=IEA;ISS

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0007623 "circadian rhythm" evidence=IMP;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009266 "response to temperature stimulus" evidence=IGI

GO:0010017 "red or far-red light signaling pathway" evidence=IMP

GO:0003677 "DNA binding" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2151206 PRR7 "pseudo-response regulator 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 5.5e-06, P = 5.5e-06
 Identities = 25/41 (60%), Positives = 32/41 (78%)

Query:    22 QRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQF 62
             QR A+L +FRQKRKERCF KKVRY  R+++A +  R +GQF
Sbjct:   668 QREAALTKFRQKRKERCFRKKVRYQSRKKLAEQRPRVRGQF 708

GO:0000156 "phosphorelay response regulator activity" evidence=IEA;ISS

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0007623 "circadian rhythm" evidence=IMP;TAS

GO:0010017 "red or far-red light signaling pathway" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0009266 "response to temperature stimulus" evidence=IGI

GO:0003677 "DNA binding" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009639 "response to red or far red light" evidence=RCA

GO:0042752 "regulation of circadian rhythm" evidence=RCA

GO:0048574 "long-day photoperiodism, flowering" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00050602 hypothetical protein (289 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	181
pfam06203	45	pfam06203, CCT, CCT motif	3e-17
smart00401	52	smart00401, ZnF_GATA, zinc finger binding to DNA c	2e-12
cd00202	54	cd00202, ZnF_GATA, Zinc finger DNA binding domain;	6e-12
pfam00320	36	pfam00320, GATA, GATA zinc finger	2e-11

>gnl|CDD|203407 pfam06203, CCT, CCT motif

 Score = 71.1 bits (175), Expect = 3e-17
 Identities = 21/44 (47%), Positives = 29/44 (65%)

Query: 23 RAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAK 66
          R A+L R+++KRK R FDKK+RY+ R+ VA    R KG+F    
Sbjct: 1  REAALLRYKEKRKTRKFDKKIRYASRKAVAESRPRVKGRFVKQS 44

This short motif is found in a number of plant proteins. It is rich in basic amino acids and has been called a CCT motif after Co, Col and Toc1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif. Toc1 mutants have been identified in this region. Length = 45

>gnl|CDD|214648 smart00401, ZnF_GATA, zinc finger binding to DNA consensus sequence [AT]GATA[AG]

 Score = 58.6 bits (142), Expect = 2e-12
 Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 2/44 (4%)

Query: 87  PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALR 130
            S  SC++CG  +  TP+ RRGPSG ++LCNACGL++   G L+
Sbjct: 1   GSGRSCSNCG--TTETPLWRRGPSGNKTLCNACGLYYKKHGGLK 42

Length = 52

>gnl|CDD|238123 cd00202, ZnF_GATA, Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

 Score = 57.4 bits (139), Expect = 6e-12
 Identities = 25/49 (51%), Positives = 36/49 (73%), Gaps = 2/49 (4%)

Query: 91  SCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQ 139
           +C++CG  + +TP+ RRGPSG  +LCNACGL+W   G +R L K+ +DQ
Sbjct: 1   ACSNCG--TTTTPLWRRGPSGGSTLCNACGLYWKKHGVMRPLSKRKKDQ 47

Length = 54

>gnl|CDD|109380 pfam00320, GATA, GATA zinc finger

 Score = 55.7 bits (135), Expect = 2e-11
 Identities = 19/36 (52%), Positives = 26/36 (72%), Gaps = 2/36 (5%)

Query: 92  CTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKG 127
           C++CG  +  TP+ RRGP G R+LCNACGL++   G
Sbjct: 1   CSNCG--TTKTPLWRRGPDGNRTLCNACGLYYRKHG 34

This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. Length = 36

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	181
cd00202	54	ZnF_GATA Zinc finger DNA binding domain; binds spe	99.65
smart00401	52	ZnF_GATA zinc finger binding to DNA consensus sequ	99.61
PF00320	36	GATA: GATA zinc finger; InterPro: IPR000679 Zinc f	99.51
PF06203	45	CCT: CCT motif; InterPro: IPR010402 The CCT (CONST	99.25
KOG1601	340	consensus GATA-4/5/6 transcription factors [Transc	98.77
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	98.68
PF09425	27	CCT_2: Divergent CCT motif; InterPro: IPR018467 Th	95.43
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	92.37
KOG3554	693	consensus Histone deacetylase complex, MTA1 compon	89.68

>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

Probab=99.65  E-value=1.1e-16  Score=108.33  Aligned_cols=44  Identities=52%  Similarity=1.258  Sum_probs=41.7

Q ss_pred             cccccccCCCCCCccccCCCCCCccchhhhHHHHhcCCCCCCCccc
Q 030237           91 SCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKM  136 (181)
Q Consensus        91 ~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~~~~~~~~r~~~~~~  136 (181)
                      .|+||+++  .||+||+||.|..+|||||||||++++..||+.+..
T Consensus         1 ~C~~C~~~--~Tp~WR~g~~~~~~LCNaCgl~~~k~~~~rp~~~~~   44 (54)
T cd00202           1 ACSNCGTT--TTPLWRRGPSGGSTLCNACGLYWKKHGVMRPLSKRK   44 (54)
T ss_pred             CCCCCCCC--CCcccccCCCCcchHHHHHHHHHHhcCCCCCcccCc
Confidence            59999997  999999999888999999999999999999999876

>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG]

Probab=99.61  E-value=4e-16  Score=104.68  Aligned_cols=47  Identities=51%  Similarity=1.120  Sum_probs=43.3

Q ss_pred             CccccccccCCCCCCccccCCCCCCccchhhhHHHHhcCCC-CCCCcccc
Q 030237           89 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGAL-RDLGKKME  137 (181)
Q Consensus        89 ~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~~~~~~~~-r~~~~~~~  137 (181)
                      ...|+||+++  .||+||+||.|++.|||||||||++++.+ ||+.+.++
T Consensus         3 ~~~C~~C~~~--~T~~WR~g~~g~~~LCnaCgl~~~k~~~~~rp~~~~~~   50 (52)
T smart00401        3 GRSCSNCGTT--ETPLWRRGPSGNKTLCNACGLYYKKHGGLKRPLSLKKD   50 (52)
T ss_pred             CCCcCCCCCC--CCCccccCCCCCCcEeecccHHHHHcCCCCCccccccc
Confidence            5789999997  99999999999989999999999999998 88877664

>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.51  E-value=3.2e-15  Score=93.30  Aligned_cols=35  Identities=54%  Similarity=1.288  Sum_probs=28.6

Q ss_pred             ccccccCCCCCCccccCCCCCCccchhhhHHHHhcCC
Q 030237           92 CTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGA  128 (181)
Q Consensus        92 C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~~~~~~~  128 (181)
                      |+||+++  .||+||++|.|..+|||+|||||+++++
T Consensus         1 C~~C~tt--~t~~WR~~~~g~~~LCn~Cg~~~kk~~~   35 (36)
T PF00320_consen    1 CSNCGTT--ETPQWRRGPNGNRTLCNACGLYYKKYGK   35 (36)
T ss_dssp             -TTT--S--T-SSEEEETTSEE-EEHHHHHHHHHHSS
T ss_pred             CcCCcCC--CCchhhcCCCCCCHHHHHHHHHHHHhCC
Confidence            8999998  8999999999998899999999999986

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....

>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction

Probab=99.25  E-value=3.4e-12  Score=83.61  Aligned_cols=43  Identities=47%  Similarity=0.779  Sum_probs=41.1

Q ss_pred             HHHHHHHHHhhhhhhcccceeeehhhHHHHHHhhhhhcccccc
Q 030237           23 RAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSA   65 (181)
Q Consensus        23 r~a~~~r~rekr~~r~f~K~~rY~~Rqe~A~r~~RekGqfss~   65 (181)
                      |.++|.||+|||++|+|+|+|+|++|+.+|+.++|.+|+|++.
T Consensus         1 R~~~l~Ry~~Kr~~R~f~kkirY~~Rk~~A~~R~RvkGRFvk~   43 (45)
T PF06203_consen    1 REEKLQRYREKRKRRNFEKKIRYESRKAVADKRPRVKGRFVKK   43 (45)
T ss_pred             CHHHHHHHHHHHHhhcccccCCcchHHHHHhhCCccCCcccCC
Confidence            6789999999999999999999999999999999999999964

The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding

>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]

Probab=98.77  E-value=4.3e-09  Score=85.52  Aligned_cols=52  Identities=44%  Similarity=0.898  Sum_probs=45.6

Q ss_pred             CccccccccCCCCCCccccCCCCCCccchhhhHHHHhcCCCCCCCccccCCCCC
Q 030237           89 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLT  142 (181)
Q Consensus        89 ~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~~~~~~~~r~~~~~~~~~~~~  142 (181)
                      ...|.+|+++  .||+||+++.|..++||||||++++++..|++.+.+......
T Consensus       199 ~~~c~~~~~~--~t~~~r~~~~g~~~~cnacgl~~k~~~~~r~~~~~~~~~~~~  250 (340)
T KOG1601|consen  199 LRQCSNCGTT--KTPLWRRGPEGPKSLCNACGLRYKKGGVRRPLPEKRPASSPR  250 (340)
T ss_pred             CcccCCCCCC--CCcceecCCCCCccccccchhhhhhcCccccccccCcccccc
Confidence            5899999997  999999999998899999999999999888888877555433

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=98.68  E-value=1.3e-08  Score=95.16  Aligned_cols=54  Identities=35%  Similarity=0.696  Sum_probs=47.5

Q ss_pred             CCCccccccccCCCCCCccccCCC-----CCCccchhhhHHHHhcCCCC-CCCccccCCCCCC
Q 030237           87 PSETSCTHCGISSKSTPMMRRGPS-----GPRSLCNACGLFWANKGALR-DLGKKMEDQPLTP  143 (181)
Q Consensus        87 ~~~~~C~nC~~~~~~Tp~wRrgp~-----G~~~LCNaCGl~~~~~~~~r-~~~~~~~~~~~~~  143 (181)
                      ....+|.||.++  .||+|||+..     |. +||||||||++.||.+| |++++..-+....
T Consensus       156 ~~~~vc~Nc~t~--stPlwrR~~~~~s~~~n-~lcnaCgl~~klhg~~r~P~t~ks~~~ks~~  215 (498)
T COG5641         156 NQPHVCSNCKTT--STPLWRRASSESSLPGN-NLCNACGLYLKLHGSPRAPISLKSDSIKSRS  215 (498)
T ss_pred             cccchhcccccc--CCccccccccccccCCc-cccccccccccccCCcCCCcccccccccccc
Confidence            344599999998  9999999999     65 99999999999999999 9999987766555

>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1

Probab=95.43  E-value=0.0091  Score=35.24  Aligned_cols=20  Identities=50%  Similarity=0.610  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHhhhhhhccc
Q 030237           21 PQRAASLDRFRQKRKERCFD   40 (181)
Q Consensus        21 ~~r~a~~~r~rekr~~r~f~   40 (181)
                      -.|.+||.||.||||+|.+.
T Consensus         2 ~aRK~SLqRFLeKRK~R~~~   21 (27)
T PF09425_consen    2 IARKASLQRFLEKRKDRLAA   21 (27)
T ss_dssp             ----HHHHHHHHHH------
T ss_pred             chHHHHHHHHHHHHHHhhcc
Confidence            35889999999999999775

The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=92.37  E-value=0.065  Score=50.76  Aligned_cols=53  Identities=28%  Similarity=0.360  Sum_probs=44.4

Q ss_pred             CCCccccccccCCCCCCccccCCCCCCccchhhhHHHHhcCCCCCCCccccCCC
Q 030237           87 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQP  140 (181)
Q Consensus        87 ~~~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~~~~~~~~r~~~~~~~~~~  140 (181)
                      +....|.+|++. ..||.||+...-.-++||+||++.+.++..+|+.++.+...
T Consensus       295 ps~~~~s~~~~~-~~tp~~~r~~~~~s~~~n~~~~~~~~~~~~~p~~pk~d~n~  347 (498)
T COG5641         295 PSDKKRSTLTTS-TATPLWRRTSDKSSFSCNASGSALKPPGSKRPLLPKPDPNS  347 (498)
T ss_pred             hhhcCccccccc-ccCcccccccccccccccccccccCCcccccccCCCCChhh
Confidence            456789999975 58999999887777999999999999999999998765444

>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]

Probab=89.68  E-value=1.9  Score=41.11  Aligned_cols=39  Identities=23%  Similarity=0.604  Sum_probs=31.1

Q ss_pred             CccccccccCCCCCCcc--ccCCCCCCccchhhhHHHHhcCCC
Q 030237           89 ETSCTHCGISSKSTPMM--RRGPSGPRSLCNACGLFWANKGAL  129 (181)
Q Consensus        89 ~~~C~nC~~~~~~Tp~w--Rrgp~G~~~LCNaCGl~~~~~~~~  129 (181)
                      .+.|.+|+++  +.-+|  |-+|.-...||-.|=+||++.|.+
T Consensus       386 g~~CEsC~tt--qs~qWYsWGppnmqcrLCasCWiyWKKygGL  426 (693)
T KOG3554|consen  386 GRACESCYTT--QSLQWYSWGPPNMQCRLCASCWIYWKKYGGL  426 (693)
T ss_pred             CCcccccccc--cccceeccCCCCccchhhHHHHHHHHHhcCc
Confidence            6799999998  66666  455555568999999999998753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	181
4gat_A	66	Solution Nmr Structure Of The Wild Type Dna Binding		5e-05
7gat_A	66	Solution Nmr Structure Of The L22v Mutant Dna Bindi		7e-05
2vus_I	43	Crystal Structure Of Unliganded Nmra-Area Zinc Fing		2e-04

>pdb|4GAT|A Chain A, Solution Nmr Structure Of The Wild Type Dna Binding Domain Of Area Complexed To A 13bp Dna Containing A Cgata Site, Regularized Mean Structure Length = 66

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 5/56 (8%)
Query: 82  GQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKME 137
           G+ + P  T+CT+C   +++TP+ RR P G + LCNACGLF    G +R L  K +
Sbjct: 4   GEQNGP--TTCTNC--FTQTTPLWRRNPEG-QPLCNACGLFLKLHGVVRPLSLKTD 54

>pdb|7GAT|A Chain A, Solution Nmr Structure Of The L22v Mutant Dna Binding Domain Of Area Complexed To A 13 Bp Dna Containing A Tgata Site, 34 Structures Length = 66

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 5/56 (8%)
Query: 82  GQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKME 137
           G+ + P  T+CT+C   +++TP+ RR P G + LCNACGLF    G +R L  K +
Sbjct: 4   GEQNGP--TTCTNC--FTQTTPVWRRNPEG-QPLCNACGLFLKLHGVVRPLSLKTD 54

>pdb|2VUS|I Chain I, Crystal Structure Of Unliganded Nmra-Area Zinc Finger Complex Length = 43

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 90  TSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDL 132
           T+CT+C   +++TP+ RR P G + LCNACGLF    G +R L
Sbjct: 2   TTCTNC--FTQTTPLWRRNPEG-QPLCNACGLFLKLHGVVRPL 41

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	181
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	2e-10
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	3e-09
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	7e-08
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	6e-07
3dfx_A	63	Trans-acting T-cell-specific transcription factor	4e-06

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans} Length = 71

 Score = 53.3 bits (128), Expect = 2e-10
 Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 2/49 (4%)

Query: 82  GQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALR 130
           G   +     C++C      T   R   S     CNAC ++       R
Sbjct: 1   GSHMNKKSFQCSNCS--VTETIRWRNIRSKEGIQCNACFIYQRKYNKTR 47

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A Length = 46

 Score = 49.7 bits (119), Expect = 3e-09
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 87  PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGK 134
                C +CG  + +TP+ RR  +G   LCNACGL+    G  R L +
Sbjct: 2   SEARECVNCG--ATATPLWRRDRTG-HYLCNACGLYHKMNGQNRPLIR 46

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I* Length = 43

 Score = 45.9 bits (109), Expect = 7e-08
 Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 3/41 (7%)

Query: 90  TSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALR 130
           T+CT+C   +++TP+ RR P G + LCNACGLF    G +R
Sbjct: 2   TTCTNCF--TQTTPLWRRNPEG-QPLCNACGLFLKLHGVVR 39

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A* Length = 66

 Score = 43.9 bits (103), Expect = 6e-07
 Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 3/46 (6%)

Query: 90  TSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKK 135
           T+CT+C   +++TP+ RR P G + LCNACGLF    G +R L  K
Sbjct: 10  TTCTNCF--TQTTPLWRRNPEG-QPLCNACGLFLKLHGVVRPLSLK 52

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* Length = 63

 Score = 42.0 bits (98), Expect = 4e-06
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 86  SPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKK 135
             + TSC +C   + +T + RR  +G   +CNACGL++      R L  K
Sbjct: 4   RRAGTSCANCQ--TTTTTLWRRNANG-DPVCNACGLYYKLHNINRPLTMK 50

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	181
3dfx_A	63	Trans-acting T-cell-specific transcription factor	99.78
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	99.76
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	99.76
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	99.76
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	99.67
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.64
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.54
3ogl_Q	21	JAZ1 incomplete degron peptide; leucine-rich repea	95.0
3ogk_Q	22	JAZ1 incomplete degron peptide; leucine rich repea	94.7

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*

Probab=99.78  E-value=1e-19  Score=125.86  Aligned_cols=57  Identities=32%  Similarity=0.601  Sum_probs=50.1

Q ss_pred             CCCccccccccCCCCCCccccCCCCCCccchhhhHHHHhcCCCCCCCccccCCCCCCCcC
Q 030237           87 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAEQ  146 (181)
Q Consensus        87 ~~~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~~~~~~~~r~~~~~~~~~~~~~~~~  146 (181)
                      .....|+||+++  .||+||+||+|+ +|||||||||++|+++||+.++++.++....+.
T Consensus         5 ~~~~~C~~C~tt--~Tp~WR~gp~G~-~LCNACGl~~~~~~~~RP~~~~~~~i~~R~Rk~   61 (63)
T 3dfx_A            5 RAGTSCANCQTT--TTTLWRRNANGD-PVCNACGLYYKLHNINRPLTMKKEGIQTRNRKM   61 (63)
T ss_dssp             CTTCCCTTTCCS--CCSSCCCCTTSC-CCCHHHHHHHHHHSSCCCGGGCCSSCCCCC---
T ss_pred             CCCCcCCCcCCC--CCCccCCCCCCC-chhhHHHHHHHHcCCCCCcCcCCCccccccCCC
Confidence            456789999998  999999999998 999999999999999999999998888766544

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*

Probab=99.76  E-value=2.1e-19  Score=115.70  Aligned_cols=42  Identities=50%  Similarity=0.991  Sum_probs=40.0

Q ss_pred             ccccccccCCCCCCccccCCCCCCccchhhhHHHHhcCCCCCCCc
Q 030237           90 TSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGK  134 (181)
Q Consensus        90 ~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~~~~~~~~r~~~~  134 (181)
                      ..|+||+++  .||+||+||+|+ +|||||||||++|+++||+++
T Consensus         2 ~~C~~C~tt--~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~l   43 (43)
T 2vut_I            2 TTCTNCFTQ--TTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSL   43 (43)
T ss_dssp             CCCSSSCCC--CCSCCEECTTSC-EECHHHHHHHHHHSSCCCCCC
T ss_pred             CcCCccCCC--CCCccccCCCCC-cccHHHHHHHHHhCCCCCCCC
Confidence            579999998  999999999998 999999999999999999975

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A

Probab=99.76  E-value=3.8e-19  Score=116.01  Aligned_cols=44  Identities=41%  Similarity=0.866  Sum_probs=41.1

Q ss_pred             CCccccccccCCCCCCccccCCCCCCccchhhhHHHHhcCCCCCCCc
Q 030237           88 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGK  134 (181)
Q Consensus        88 ~~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~~~~~~~~r~~~~  134 (181)
                      ....|+||+++  .||+||+||+|+ +|||||||||++|+++||+++
T Consensus         3 ~~~~C~~C~tt--~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~~   46 (46)
T 1gnf_A            3 EARECVNCGAT--ATPLWRRDRTGH-YLCNACGLYHKMNGQNRPLIR   46 (46)
T ss_dssp             CSCCCTTTCCC--CCSSCBCCTTCC-CBCSHHHHHHHHTCSCCCCCC
T ss_pred             CCCCCCCcCCC--CCCcCccCCCCC-ccchHHHHHHHHcCCCCCCCC
Confidence            46789999998  999999999997 999999999999999999875

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*

Probab=99.76  E-value=4.5e-19  Score=123.63  Aligned_cols=55  Identities=40%  Similarity=0.739  Sum_probs=49.0

Q ss_pred             CCccccccccCCCCCCccccCCCCCCccchhhhHHHHhcCCCCCCCccccCCCCCCCc
Q 030237           88 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAE  145 (181)
Q Consensus        88 ~~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~~~~~~~~r~~~~~~~~~~~~~~~  145 (181)
                      ....|+||+++  .||+||+||+|. +|||||||||++|+++||++++++.+......
T Consensus         8 ~~~~C~~C~t~--~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~RP~~~k~~~ik~R~R~   62 (66)
T 4gat_A            8 GPTTCTNCFTQ--TTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSLKTDVIKKRNRN   62 (66)
T ss_dssp             SSCCCTTTCCC--CCSSCEEETTTE-EECHHHHHHHHHHCSCCCGGGCCSCCCCCCCS
T ss_pred             CCCCCCCCCCC--CCCcCCcCCCCC-CccHHHHHHHHHcCCCCchhhccccccccccC
Confidence            46899999998  999999999997 99999999999999999999998776654433

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}

Probab=99.67  E-value=2.3e-18  Score=121.59  Aligned_cols=50  Identities=20%  Similarity=0.311  Sum_probs=42.2

Q ss_pred             CCCccccccccCCCCCCccccCCCCCCccchhhhHHHHhcCCCCCCCccccC
Q 030237           87 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMED  138 (181)
Q Consensus        87 ~~~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~~~~~~~~r~~~~~~~~  138 (181)
                      .....|+||+++  .||+||+||.+..+|||||||||++|+++||++++.+.
T Consensus         6 ~~~~~C~nC~tt--~Tp~WRrg~~~~g~LCNACGl~~~~~~~~RP~~~~~~~   55 (71)
T 2kae_A            6 KKSFQCSNCSVT--ETIRWRNIRSKEGIQCNACFIYQRKYNKTRPVTAVNKY   55 (71)
T ss_dssp             --CCCCSSSCCS--CCSSCCCCSSSSCCCSSHHHHHHHHHHSCCCTHHHHHH
T ss_pred             CCCCcCCccCCC--CCCccccCCCCCCccchHHHHHHHHhCCCCCcccchhh
Confidence            356899999998  99999995444449999999999999999999998754

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.64  E-value=1e-16  Score=122.34  Aligned_cols=55  Identities=33%  Similarity=0.637  Sum_probs=49.1

Q ss_pred             CCccccccccCCCCCCccccCCCCCCccchhhhHHHHhcCCCCCCCccccCCCCCCCc
Q 030237           88 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAE  145 (181)
Q Consensus        88 ~~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~~~~~~~~r~~~~~~~~~~~~~~~  145 (181)
                      ....|+||+++  .||+||+||+| .+|||||||||++|++.||++++++.++....+
T Consensus        58 ~~~~C~~C~t~--~tp~WRr~~~g-~~lCNaCgl~~~~~~~~rp~~~~~~~i~~r~r~  112 (115)
T 4hc9_A           58 AGTSCANCQTT--TTTLWRRNANG-DPVCNACGLYYKLHNINRPLTMKKEGIQTRNRK  112 (115)
T ss_dssp             TTCCCTTTCCS--CCSSCEECTTS-CEECHHHHHHHHHHSSCCCGGGCCSSCCCCC--
T ss_pred             ccccCCCcCCC--CcceeEECCCC-CCcchHHHHHHHHhCCCCCccccccchhhcccc
Confidence            45899999998  99999999999 699999999999999999999999888766544

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.54  E-value=7.1e-15  Score=112.17  Aligned_cols=66  Identities=33%  Similarity=0.624  Sum_probs=52.4

Q ss_pred             CCccccccccCCCCCCccccCCCCCCccchhhhHHHHhcCCCCCCCccccCCCCCCCcCCCCCCCCCCCCCCC
Q 030237           88 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAEQGEGEVNDSDCGTAA  160 (181)
Q Consensus        88 ~~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (181)
                      ....|+||+++  .||+||+||+|. +|||||||||++|+.+||+.+.+......    ........+|+++.
T Consensus         4 ~~~~C~~Cg~~--~Tp~WRr~~~g~-~lCnaCgl~~Kl~G~nRP~~KpKKR~~~~----~~~~~~C~~C~t~~   69 (115)
T 4hc9_A            4 MGRECVNCGAT--STPLWRRDGTGH-YLCNACGLYHKMNGQNRPLIKPKRRLSAA----RRAGTSCANCQTTT   69 (115)
T ss_dssp             --CCCTTTCCS--CCSSCEECTTSC-EECHHHHHHHHHHSSCCCCSSCCCCCCCC----CCTTCCCTTTCCSC
T ss_pred             CCCCCCCCCCc--cCCcceECCCCC-CcCcchhhhhhhccccccccccccccccc----ccccccCCCcCCCC
Confidence            46889999997  999999999994 99999999999999999998766443321    22346788888766

>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*

Probab=95.00  E-value=0.012  Score=31.99  Aligned_cols=17  Identities=59%  Similarity=0.784  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHhhhhhh
Q 030237           21 PQRAASLDRFRQKRKER   37 (181)
Q Consensus        21 ~~r~a~~~r~rekr~~r   37 (181)
                      -.|.+||.||.||||+|
T Consensus         4 ~aRk~SLqRFleKRk~R   20 (21)
T 3ogl_Q            4 IARRASLHRFLEKRKDR   20 (26)
T ss_pred             hhHHHHHHHHHHHhhcc
Confidence            46899999999999987

>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}

Probab=94.70  E-value=0.011  Score=32.57  Aligned_cols=18  Identities=56%  Similarity=0.761  Sum_probs=15.4

Q ss_pred             HHHHHHHHHhhhhhhccc
Q 030237           23 RAASLDRFRQKRKERCFD   40 (181)
Q Consensus        23 r~a~~~r~rekr~~r~f~   40 (181)
                      |.+||.||.||||+|...
T Consensus         1 Rk~SLqRFleKRk~R~~~   18 (22)
T 3ogk_Q            1 RRASLHRFLEKRKDRVTS   18 (26)
T ss_pred             CchhHHHHHHHHHHHhhc
Confidence            568999999999999653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	181
d2vuti1	42	g.39.1.1 (I:671-712) Erythroid transcription facto	7e-11
d1y0ja1	39	g.39.1.1 (A:200-238) Erythroid transcription facto	2e-09
d3gata_	66	g.39.1.1 (A:) Erythroid transcription factor GATA-	2e-07

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]} Length = 42

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

 Score = 52.9 bits (127), Expect = 7e-11
 Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 3/43 (6%)

Query: 90  TSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDL 132
           T+CT+C   +++TP+ RR P G + LCNACGLF    G +R L
Sbjct: 1   TTCTNCF--TQTTPLWRRNPEG-QPLCNACGLFLKLHGVVRPL 40

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 39

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.6 bits (116), Expect = 2e-09
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)

Query: 91  SCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKG 127
            C +CG  + +TP+ RR  +G   LCNACGL+    G
Sbjct: 4   ECVNCG--ATATPLWRRDRTG-HYLCNACGLYHKMNG 37

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 66

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 44.2 bits (104), Expect = 2e-07
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 90  TSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKME 137
           T C++C   + +T + RR P G   +CNACGL++      R L  + +
Sbjct: 5   TVCSNCQ--TSTTTLWRRSPMG-DPVCNACGLYYKLHQVNRPLTMRKD 49

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	181
d2vuti1	42	Erythroid transcription factor GATA-1 {Emericella	99.82
d3gata_	66	Erythroid transcription factor GATA-1 {Chicken (Ga	99.78
d1y0ja1	39	Erythroid transcription factor GATA-1 {Mouse (Mus	99.72

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

Probab=99.82  E-value=2.6e-21  Score=122.18  Aligned_cols=41  Identities=49%  Similarity=1.009  Sum_probs=39.1

Q ss_pred             cccccccCCCCCCccccCCCCCCccchhhhHHHHhcCCCCCCCc
Q 030237           91 SCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGK  134 (181)
Q Consensus        91 ~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~~~~~~~~r~~~~  134 (181)
                      .|+||+++  .||+||+||+| ++|||||||||++|+++||++|
T Consensus         2 ~C~nC~tt--~Tp~WRr~~~G-~~lCNACGl~~k~~g~~RP~sl   42 (42)
T d2vuti1           2 TCTNCFTQ--TTPLWRRNPEG-QPLCNACGLFLKLHGVVRPLSL   42 (42)
T ss_dssp             CCSSSCCC--CCSCCEECTTS-CEECHHHHHHHHHHSSCCCCCC
T ss_pred             cCCCCCCC--CCccceeCCCC-CCchhhhhHHHHHcCCCCCCCC
Confidence            69999998  99999999999 5999999999999999999986

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.78  E-value=8.7e-20  Score=125.58  Aligned_cols=56  Identities=30%  Similarity=0.621  Sum_probs=49.8

Q ss_pred             CccccccccCCCCCCccccCCCCCCccchhhhHHHHhcCCCCCCCccccCCCCCCCcCC
Q 030237           89 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAEQG  147 (181)
Q Consensus        89 ~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~~~~~~~~r~~~~~~~~~~~~~~~~~  147 (181)
                      ...|+||+++  .||+||+||.| .+|||||||||++|+++||+.++++.+........
T Consensus         4 g~~C~nCgt~--~Tp~WRr~~~G-~~lCNACGl~~~~~~~~RP~~~~~~~i~~r~r~~~   59 (66)
T d3gata_           4 GTVCSNCQTS--TTTLWRRSPMG-DPVCNACGLYYKLHQVNRPLTMRKDGIQTRNRKVS   59 (66)
T ss_dssp             TCCCTTTCCC--CCSSEEECTTS-CEEEHHHHHHHHHHCSCCCGGGCCSSCCCCSCCCC
T ss_pred             CCCCCCCCCC--CCcccccCCCC-CcccchhHHHHHHhCCcCCccccccccccccCCCC
Confidence            4679999998  99999999999 59999999999999999999999888776665544

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=9.1e-19  Score=108.76  Aligned_cols=38  Identities=42%  Similarity=0.961  Sum_probs=35.0

Q ss_pred             CccccccccCCCCCCccccCCCCCCccchhhhHHHHhcCCC
Q 030237           89 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGAL  129 (181)
Q Consensus        89 ~~~C~nC~~~~~~Tp~wRrgp~G~~~LCNaCGl~~~~~~~~  129 (181)
                      .+.|+||+++  .||+||+||+| ++|||||||||++||+.
T Consensus         2 ~r~C~~Cgtt--~Tp~WR~gp~G-~~LCNACGl~~r~~G~n   39 (39)
T d1y0ja1           2 ARECVNCGAT--ATPLWRRDRTG-HYLCNACGLYHKMNGQN   39 (39)
T ss_dssp             CCCCSSSCCC--CCSCCEECTTS-CEECSSHHHHHHHSCCC
T ss_pred             cCCCCCCCCC--CCcccccCCCC-CEeeHHhHHHHHHhCCC
Confidence            4789999998  99999999999 59999999999999863