Citrus Sinensis ID: 030249

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180
Protein Sequence
MVSPIGRMEDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSLLDSFRFCSLGCKVTSPRSLCHHYSSLFSFFFLLLLVNCFPSFFHSLLCSGLC
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHccccccccccccccccccccEEEcccccccccHHHHHcccccccEEEEEcccccEEEEccccEEEEEcccEEEEEccEEEEEEccccccccccccccccccccccccccccEEEEccccccccccccccccHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHHHHHHHHccccHHccccccccccEEEEccccccHHHHHccccccccEEEEEEEEcccEEEHHHHHHHEcccccEEEEEcccEEEEEccccccccccccccccHHHHHHccccccEEEEEEEEEEEcccccccccccHHHHHHHHHcccHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mvspigrmedddmgpqwlkpmlrasyfipcvvhgdsnksecnmfcldcmgnafcsyclinhkdhrvvQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVflnerpqprpgkgvtntcEICCRSLLDsfrfcslgckvtsprslchhysSLFSFFFLLLLVNCFPSFFHSLLCSGLC
Flexible Loop (DISEMBL)
mvspigrmedddmgpQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLnerpqprpgkgvtNTCEICCRSLLDSFRFCSLGCKVTSPRSLCHHYSSLFSFFFLLLLVNCFPSFFHSLLCSGLC
Low Complexity Region (SEG)
MVSPIGRMEDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSLLDSFRFCSLGCKVTSPRSLCHHYsslfsfffllllVNCFPSFFHSLLCSGLC
Disordered region (IsUnstruct)
***************QWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNER*****GKGVTNTCEICCRSLLDSFRFCSLGCKVTSPRSLCHHYSSLFSFFFLLLLVNCFPSFFHSLLCSG**
Disordered Region (DISOPRED)
*****************LKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVF*****************EICCRSLLDSFRFCSLGCKVTSPRSLCHHYSSLFSFFFLLLLVNCFPSFFHSLLCSGLC
Disordered Region (DISEMBL)
********EDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSLLDSFRFCSLGCKVTSPRSLCHHYSSLFSFFFLLLLVNCFPSFFHSLLCSGLC
Disordered Region (DISPRO)
************MGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPR****VTNTCEICCRSLLDSFRFCSLGCKVTSPRSLCHHYSSLFSFFFLLLLVNCFPSFFHSLLCSGLC
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVSPIGRMEDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSLLDSFRFCSLGCKVTSPRSLCHHYSSLFSFFFLLLLVNCFPSFFHSLLCSGLC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
224065625	238	predicted protein [Populus trichocarpa]	0.783	0.592	0.900	2e-70
255539370	235	protein with unknown function [Ricinus c	0.783	0.6	0.886	3e-70
224083394	238	predicted protein [Populus trichocarpa]	0.783	0.592	0.907	5e-70
225457699	247	PREDICTED: uncharacterized protein LOC10	0.794	0.578	0.874	9e-70
297745626	305	unnamed protein product [Vitis vinifera]	0.805	0.475	0.862	1e-69
147811534	240	hypothetical protein VITISV_044258 [Viti	0.755	0.566	0.875	2e-66
297845080	246	zinc-binding family protein [Arabidopsis	0.738	0.540	0.864	2e-63
18394936	246	PLATZ transcription factor domain-contai	0.761	0.556	0.839	3e-63
186478716	243	PLATZ transcription factor domain-contai	0.761	0.563	0.839	3e-63
21537073	246	unknown [Arabidopsis thaliana]	0.761	0.556	0.832	1e-62

>gi|224065625|ref|XP_002301890.1| predicted protein [Populus trichocarpa] gi|222843616|gb|EEE81163.1| predicted protein [Populus trichocarpa]

 Score =  270 bits (691), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 127/141 (90%), Positives = 133/141 (94%)

Query: 1   MVSPIGRMEDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLIN 60
           MVSP G+M + D GP WL PMLRASYFIPC VHG+SNKSECNMFCLDCMGNAFCSYCLI 
Sbjct: 1   MVSPFGQMRNHDTGPPWLIPMLRASYFIPCAVHGESNKSECNMFCLDCMGNAFCSYCLIY 60

Query: 61  HKDHRVVQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNT 120
           H+DHRVVQIRRSSYHNVVRVNEIQK+IDISCVQTYIINSAKIVFLNERPQPRPGKGVTNT
Sbjct: 61  HRDHRVVQIRRSSYHNVVRVNEIQKYIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNT 120

Query: 121 CEICCRSLLDSFRFCSLGCKV 141
           CEICCRSLLDSFRFCSLGCK+
Sbjct: 121 CEICCRSLLDSFRFCSLGCKL 141

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539370|ref|XP_002510750.1| protein with unknown function [Ricinus communis] gi|223551451|gb|EEF52937.1| protein with unknown function [Ricinus communis]

 Score =  269 bits (688), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 125/141 (88%), Positives = 133/141 (94%)

Query: 1   MVSPIGRMEDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLIN 60
           MVSP G+M   D+GP WL+PMLRASYF+PC  HGDSNKSECN+FCLDCMGNA CSYCLIN
Sbjct: 1   MVSPFGQMVHHDLGPPWLRPMLRASYFVPCSFHGDSNKSECNLFCLDCMGNALCSYCLIN 60

Query: 61  HKDHRVVQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNT 120
           HKDHR+VQIRRSSYHNVVRVNEIQK+IDISCVQTYIINSAKIVFLNERPQPRPGKGVTNT
Sbjct: 61  HKDHRIVQIRRSSYHNVVRVNEIQKYIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNT 120

Query: 121 CEICCRSLLDSFRFCSLGCKV 141
           CEICCRSLLDSFRFCSLGCK+
Sbjct: 121 CEICCRSLLDSFRFCSLGCKL 141

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083394|ref|XP_002307009.1| predicted protein [Populus trichocarpa] gi|118489570|gb|ABK96587.1| unknown [Populus trichocarpa x Populus deltoides] gi|222856458|gb|EEE94005.1| predicted protein [Populus trichocarpa]

 Score =  268 bits (686), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 128/141 (90%), Positives = 133/141 (94%)

Query: 1   MVSPIGRMEDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLIN 60
           MVS  G+M + DMGP WL PMLRASYFIPC VHG+SNKSECNMFCLDCMGNAFCSYCLI 
Sbjct: 1   MVSSFGQMGNHDMGPPWLIPMLRASYFIPCGVHGESNKSECNMFCLDCMGNAFCSYCLIY 60

Query: 61  HKDHRVVQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNT 120
           HKDHRVVQIRRSSYHNVVRVNEIQK+IDISCVQTYIINSAKIVFLNERPQPRPGKGVTNT
Sbjct: 61  HKDHRVVQIRRSSYHNVVRVNEIQKYIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNT 120

Query: 121 CEICCRSLLDSFRFCSLGCKV 141
           CEICCRSLLDSFRFCSLGCK+
Sbjct: 121 CEICCRSLLDSFRFCSLGCKL 141

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457699|ref|XP_002277078.1| PREDICTED: uncharacterized protein LOC100246080 [Vitis vinifera]

 Score =  268 bits (684), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 125/143 (87%), Positives = 135/143 (94%)

Query: 1   MVSPIGRMEDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLIN 60
           MVS IGRM +D +GP WLKPMLRASYF+PC +HGDSNKSECNMFCLDCMG+A CSYCLI+
Sbjct: 1   MVSSIGRMGNDHLGPPWLKPMLRASYFVPCGIHGDSNKSECNMFCLDCMGDALCSYCLIH 60

Query: 61  HKDHRVVQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNT 120
           HKDH VVQIRRSSYHNVVRVNEIQK+IDISCVQTY+INSAKIVFLNERPQPRPGKGVTNT
Sbjct: 61  HKDHCVVQIRRSSYHNVVRVNEIQKYIDISCVQTYVINSAKIVFLNERPQPRPGKGVTNT 120

Query: 121 CEICCRSLLDSFRFCSLGCKVTS 143
           CEICCRSLLDSFRFCSLGCK+ +
Sbjct: 121 CEICCRSLLDSFRFCSLGCKLGA 143

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745626|emb|CBI40791.3| unnamed protein product [Vitis vinifera]

 Score =  267 bits (683), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 125/145 (86%), Positives = 136/145 (93%)

Query: 1   MVSPIGRMEDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLIN 60
           MVS IGRM +D +GP WLKPMLRASYF+PC +HGDSNKSECNMFCLDCMG+A CSYCLI+
Sbjct: 33  MVSSIGRMGNDHLGPPWLKPMLRASYFVPCGIHGDSNKSECNMFCLDCMGDALCSYCLIH 92

Query: 61  HKDHRVVQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNT 120
           HKDH VVQIRRSSYHNVVRVNEIQK+IDISCVQTY+INSAKIVFLNERPQPRPGKGVTNT
Sbjct: 93  HKDHCVVQIRRSSYHNVVRVNEIQKYIDISCVQTYVINSAKIVFLNERPQPRPGKGVTNT 152

Query: 121 CEICCRSLLDSFRFCSLGCKVTSPR 145
           CEICCRSLLDSFRFCSLGCK+ + +
Sbjct: 153 CEICCRSLLDSFRFCSLGCKLGAMK 177

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147811534|emb|CAN67639.1| hypothetical protein VITISV_044258 [Vitis vinifera]

 Score =  256 bits (655), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 119/136 (87%), Positives = 129/136 (94%)

Query: 8   MEDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVV 67
           M +D +GP WLKPMLRASYF+PC +HGDSNKSECNMFCLDCMG+A CSYCLI+HKDH VV
Sbjct: 1   MGNDHLGPPWLKPMLRASYFVPCGIHGDSNKSECNMFCLDCMGDALCSYCLIHHKDHCVV 60

Query: 68  QIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRS 127
           QIRRSSYHNVVRVNEIQK+IDISCVQTY+INSAKIVFLNERPQPRPGKGVTNTCEICCRS
Sbjct: 61  QIRRSSYHNVVRVNEIQKYIDISCVQTYVINSAKIVFLNERPQPRPGKGVTNTCEICCRS 120

Query: 128 LLDSFRFCSLGCKVTS 143
           LLDSFRFCSLGCK+ +
Sbjct: 121 LLDSFRFCSLGCKLGA 136

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845080|ref|XP_002890421.1| zinc-binding family protein [Arabidopsis lyrata subsp. lyrata] gi|297336263|gb|EFH66680.1| zinc-binding family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  246 bits (629), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 115/133 (86%), Positives = 122/133 (91%)

Query: 9   EDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQ 68
           E+D   P WL PMLR SYF+PC +H DSNK+ECN+FCLDC GNAFCSYCL+ HKDHRVVQ
Sbjct: 10  EEDYTSPPWLMPMLRGSYFVPCSIHVDSNKNECNLFCLDCAGNAFCSYCLVKHKDHRVVQ 69

Query: 69  IRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSL 128
           IRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPR GKGVTNTCEICCRSL
Sbjct: 70  IRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRIGKGVTNTCEICCRSL 129

Query: 129 LDSFRFCSLGCKV 141
           LDSFRFCSLGCK+
Sbjct: 130 LDSFRFCSLGCKL 142

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18394936|ref|NP_564128.1| PLATZ transcription factor domain-containing protein [Arabidopsis thaliana] gi|14030627|gb|AAK52988.1|AF375404_1 At1g21000/F9H16_1 [Arabidopsis thaliana] gi|16226407|gb|AAL16160.1|AF428392_1 At1g21000/F9H16_1 [Arabidopsis thaliana] gi|22136542|gb|AAM91057.1| At1g21000/F9H16_1 [Arabidopsis thaliana] gi|332191931|gb|AEE30052.1| PLATZ transcription factor domain-containing protein [Arabidopsis thaliana]

 Score =  246 bits (627), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 115/137 (83%), Positives = 123/137 (89%)

Query: 9   EDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQ 68
           E+D   P WL PMLR SYF+PC +H DSNK+ECN+FCLDC GNAFCSYCL+ HKDHRVVQ
Sbjct: 10  EEDYTSPPWLMPMLRGSYFVPCSIHVDSNKNECNLFCLDCAGNAFCSYCLVKHKDHRVVQ 69

Query: 69  IRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSL 128
           IRRSSYHNVVRVNEIQKFIDI+CVQTYIINSAKIVFLNERPQPR GKGVTNTCEICCRSL
Sbjct: 70  IRRSSYHNVVRVNEIQKFIDIACVQTYIINSAKIVFLNERPQPRIGKGVTNTCEICCRSL 129

Query: 129 LDSFRFCSLGCKVTSPR 145
           LDSFRFCSLGCK+   R
Sbjct: 130 LDSFRFCSLGCKLGGMR 146

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186478716|ref|NP_001117322.1| PLATZ transcription factor domain-containing protein [Arabidopsis thaliana] gi|4836888|gb|AAD30591.1|AC007369_1 Unknown protein [Arabidopsis thaliana] gi|13877713|gb|AAK43934.1|AF370615_1 Unknown protein [Arabidopsis thaliana] gi|332191932|gb|AEE30053.1| PLATZ transcription factor domain-containing protein [Arabidopsis thaliana]

 Score =  246 bits (627), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 115/137 (83%), Positives = 123/137 (89%)

Query: 9   EDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQ 68
           E+D   P WL PMLR SYF+PC +H DSNK+ECN+FCLDC GNAFCSYCL+ HKDHRVVQ
Sbjct: 7   EEDYTSPPWLMPMLRGSYFVPCSIHVDSNKNECNLFCLDCAGNAFCSYCLVKHKDHRVVQ 66

Query: 69  IRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSL 128
           IRRSSYHNVVRVNEIQKFIDI+CVQTYIINSAKIVFLNERPQPR GKGVTNTCEICCRSL
Sbjct: 67  IRRSSYHNVVRVNEIQKFIDIACVQTYIINSAKIVFLNERPQPRIGKGVTNTCEICCRSL 126

Query: 129 LDSFRFCSLGCKVTSPR 145
           LDSFRFCSLGCK+   R
Sbjct: 127 LDSFRFCSLGCKLGGMR 143

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21537073|gb|AAM61414.1| unknown [Arabidopsis thaliana]

 Score =  244 bits (622), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 114/137 (83%), Positives = 123/137 (89%)

Query: 9   EDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQ 68
           E+D   P WL PMLR SYF+PC +H DSNK+ECN+FCLDC GNAFCSYCL+ HKDHRVVQ
Sbjct: 10  EEDYTSPPWLMPMLRGSYFVPCSIHVDSNKNECNLFCLDCAGNAFCSYCLVKHKDHRVVQ 69

Query: 69  IRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSL 128
           IRRSSYHNVVRVNEIQKFIDI+CVQT+IINSAKIVFLNERPQPR GKGVTNTCEICCRSL
Sbjct: 70  IRRSSYHNVVRVNEIQKFIDIACVQTHIINSAKIVFLNERPQPRIGKGVTNTCEICCRSL 129

Query: 129 LDSFRFCSLGCKVTSPR 145
           LDSFRFCSLGCK+   R
Sbjct: 130 LDSFRFCSLGCKLGGMR 146

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
TAIR|locus:2037405	246	AT1G21000 [Arabidopsis thalian	0.761	0.556	0.839	2.6e-63
TAIR|locus:2011721	245	AT1G76590 [Arabidopsis thalian	0.75	0.551	0.811	1.5e-60
TAIR|locus:2141070	227	AT4G17900 [Arabidopsis thalian	0.755	0.599	0.678	6.3e-53
TAIR|locus:2035614	213	AT1G32700 [Arabidopsis thalian	0.711	0.600	0.710	7.2e-52
TAIR|locus:2009879	216	AT1G43000 [Arabidopsis thalian	0.744	0.620	0.711	7.2e-52
TAIR|locus:2178580	226	AT5G46710 [Arabidopsis thalian	0.777	0.619	0.552	1.3e-43
TAIR|locus:2057867	189	AT2G27930 [Arabidopsis thalian	0.727	0.693	0.546	1.5e-37
TAIR|locus:1009023224	256	AT2G12646 "AT2G12646" [Arabido	0.7	0.492	0.472	1.6e-29
TAIR|locus:2101881	245	AT3G60670 [Arabidopsis thalian	0.738	0.542	0.429	8.2e-28
TAIR|locus:2015761	243	AT1G31040 [Arabidopsis thalian	0.694	0.514	0.456	1.3e-27

TAIR|locus:2037405 AT1G21000 [Arabidopsis thaliana (taxid:3702)]

 Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
 Identities = 115/137 (83%), Positives = 123/137 (89%)

Query:     9 EDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQ 68
             E+D   P WL PMLR SYF+PC +H DSNK+ECN+FCLDC GNAFCSYCL+ HKDHRVVQ
Sbjct:    10 EEDYTSPPWLMPMLRGSYFVPCSIHVDSNKNECNLFCLDCAGNAFCSYCLVKHKDHRVVQ 69

Query:    69 IRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSL 128
             IRRSSYHNVVRVNEIQKFIDI+CVQTYIINSAKIVFLNERPQPR GKGVTNTCEICCRSL
Sbjct:    70 IRRSSYHNVVRVNEIQKFIDIACVQTYIINSAKIVFLNERPQPRIGKGVTNTCEICCRSL 129

Query:   129 LDSFRFCSLGCKVTSPR 145
             LDSFRFCSLGCK+   R
Sbjct:   130 LDSFRFCSLGCKLGGMR 146

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2011721 AT1G76590 [Arabidopsis thaliana (taxid:3702)]

 Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 112/138 (81%), Positives = 123/138 (89%)

Query:     7 RMEDDDMG---PQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKD 63
             R E+D+     P WL PMLRA+YFIPC +H  SNKSECNMFCLDC   AFCSYCL+NH++
Sbjct:     7 RAEEDNYNLNPPPWLIPMLRANYFIPCSIHAASNKSECNMFCLDCSSEAFCSYCLLNHRN 66

Query:    64 HRVVQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEI 123
             HRV+QIRRSSYHNVVRVNEIQK+IDISCVQTYIINSA+IVFLNERPQPR GKGVTNTCEI
Sbjct:    67 HRVLQIRRSSYHNVVRVNEIQKYIDISCVQTYIINSARIVFLNERPQPRIGKGVTNTCEI 126

Query:   124 CCRSLLDSFRFCSLGCKV 141
             CCRSLLDSFRFCSLGCK+
Sbjct:   127 CCRSLLDSFRFCSLGCKL 144

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2141070 AT4G17900 [Arabidopsis thaliana (taxid:3702)]

 Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
 Identities = 93/137 (67%), Positives = 115/137 (83%)

Query:     6 GRMEDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHR 65
             G  E+++  P WLKP+L+  +F+ C  HGDS+KSECNM+CLDC     CS CL +HKDHR
Sbjct:    25 GPEEEENRWPPWLKPLLKEQFFVHCKFHGDSHKSECNMYCLDCTNGPLCSLCLAHHKDHR 84

Query:    66 VVQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICC 125
              +QIRRSSYH+V+RVNEIQK++DI  +QTY+INSAK+VFLNERPQPRPGKGVTNTC++C 
Sbjct:    85 TIQIRRSSYHDVIRVNEIQKYLDIGGIQTYVINSAKVVFLNERPQPRPGKGVTNTCKVCY 144

Query:   126 RSLLD-SFRFCSLGCKV 141
             RSL+D SFRFCSLGCK+
Sbjct:   145 RSLVDDSFRFCSLGCKI 161

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2035614 AT1G32700 [Arabidopsis thaliana (taxid:3702)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 91/128 (71%), Positives = 109/128 (85%)

Query:    15 PQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQIRRSSY 74
             P WLKP+LR  +F+ C +H DS+KSECNM+CLDC     CS CL  HKDH  +QIRRSSY
Sbjct:    12 PHWLKPLLREKFFVQCKLHADSHKSECNMYCLDCTNGPLCSLCLSFHKDHHAIQIRRSSY 71

Query:    75 HNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSLLDSFRF 134
             H+V+RV+EIQKF+DI+ VQTY+INSAK+VFLNERPQPRPGKGV NTCE+C RSL+DSFRF
Sbjct:    72 HDVIRVSEIQKFLDITGVQTYVINSAKVVFLNERPQPRPGKGVINTCEVCYRSLVDSFRF 131

Query:   135 CSLGCKVT 142
             CSLGCK++
Sbjct:   132 CSLGCKIS 139

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2009879 AT1G43000 [Arabidopsis thaliana (taxid:3702)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 96/135 (71%), Positives = 111/135 (82%)

Query:     8 MEDDD-MGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRV 66
             ME+DD M P WL PMLRA YF+ C +H  S+KSECN+FCLDC GNAFCS CL +H+ HRV
Sbjct:     1 MENDDVMTPPWLTPMLRADYFVTCSIHSQSSKSECNLFCLDCSGNAFCSSCLAHHRTHRV 60

Query:    67 VQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCR 126
             +QIRRSSYHNVVRV+EIQK IDISC+QTY+INSAKI FLN RPQ R GK +  TC+IC R
Sbjct:    61 IQIRRSSYHNVVRVSEIQKHIDISCIQTYVINSAKIFFLNARPQCRTGKSLNKTCQICSR 120

Query:   127 SLLDSFRFCSLGCKV 141
             +LLDSF FCSL CK+
Sbjct:   121 NLLDSFLFCSLACKL 135

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2178580 AT5G46710 [Arabidopsis thaliana (taxid:3702)]

 Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 79/143 (55%), Positives = 106/143 (74%)

Query:     2 VSPIGR--MEDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLI 59
             + P  R  ME ++  P WLKP+L   +F  C  HG   ++EC M+CLDC  ++FCS CL 
Sbjct:    13 IKPKNRRFMEGENQWPIWLKPLLNQHFFAQCKFHGHLPRTECKMYCLDCTNDSFCSLCLS 72

Query:    60 NHKDHRVVQIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTN 119
              H++HR +QIR SSYHNV +V+EIQK++DIS +QTY+INS+K++FLNERPQ +PGKG TN
Sbjct:    73 EHENHRTIQIRISSYHNVTKVDEIQKYLDISSIQTYVINSSKVLFLNERPQSKPGKGFTN 132

Query:   120 TCEICCRSLLDS-FRFCSLGCKV 141
              C +C R L ++ FRFCS+GCKV
Sbjct:   133 ACMVCYRGLAENCFRFCSIGCKV 155

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2057867 AT2G27930 [Arabidopsis thaliana (taxid:3702)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 77/141 (54%), Positives = 100/141 (70%)

Query:    15 PQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLIN-HKDHRVVQIRRSS 73
             P+WL+ +LR ++F  C  H ++ ++ECNMFCL C   AFC YC  + H DH V+QIRRSS
Sbjct:     4 PKWLEGLLRTNFFSICPRHRETPRNECNMFCLSCQNAAFCFYCRSSFHIDHPVLQIRRSS 63

Query:    74 YHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGK-GVTNT--------CEIC 124
             YH+VVRV+EI+  +DI  VQTY+INSA+++FLNERPQP+    G  ++        CE C
Sbjct:    64 YHDVVRVSEIENALDIRGVQTYVINSARVLFLNERPQPKNSSHGAASSTPKTMSYFCETC 123

Query:   125 CRSLLDSFRFCSLGCKVTSPR 145
             CR+LLD FRFCSLGCKV   R
Sbjct:   124 CRTLLDPFRFCSLGCKVEGMR 144

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1009023224 AT2G12646 "AT2G12646" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 60/127 (47%), Positives = 83/127 (65%)

Query:    15 PQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQIRRSSY 74
             P WL  +    +F+ C  H  + K+E N+ CLDC   + C +C+ +H+ HR++Q+RR  Y
Sbjct:     6 PAWLDALYAEKFFVGCPYHETAKKNERNVCCLDCC-TSLCPHCVPSHRFHRLLQVRRYVY 64

Query:    75 HNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSLLDSFRF 134
             H+VVR+ ++QK ID S VQ Y INSAK+VF+ +RPQ R  KG  N C  C RSL + +  
Sbjct:    65 HDVVRLEDLQKLIDCSNVQAYTINSAKVVFIKKRPQNRQFKGAGNYCTSCDRSLQEPYIH 124

Query:   135 CSLGCKV 141
             CSLGCKV
Sbjct:   125 CSLGCKV 131

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2101881 AT3G60670 [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 58/135 (42%), Positives = 83/135 (61%)

Query:     8 MEDDDMGPQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVV 67
             ME  +  P WL+ +L+  +F  C+ H D  K+E N+ C+DC     C +CL +H  HR++
Sbjct:     1 MESGEF-PAWLEVLLKDKFFNACLDHEDDKKNEKNILCIDCC-LTICPHCLSSHTSHRLL 58

Query:    68 QIRRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRS 127
             QIRR  Y +V+RV +  K +D S +Q Y  NS+K+VF+NERPQ R  +G  N C  C RS
Sbjct:    59 QIRRYVYRDVLRVEDGSKLMDCSLIQPYTTNSSKVVFINERPQSRQFRGSGNICITCDRS 118

Query:   128 LLDSFRFCSLGCKVT 142
             L   + FC L CK++
Sbjct:   119 LQSPYLFCCLSCKIS 133

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=ISS

TAIR|locus:2015761 AT1G31040 [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 58/127 (45%), Positives = 83/127 (65%)

Query:    15 PQWLKPMLRASYFIPCVVHGDSNKSECNMFCLDCMGNAFCSYCLINHKDHRVVQIRRSSY 74
             P WL+ ++  ++F  C +H    KSE N+FCL C  +  C +CL +H+ H ++Q+RR  Y
Sbjct:    19 PAWLEGLMAETFFSSCGIHETRRKSEKNVFCLLCCLSV-CPHCLPSHRSHPLLQVRRYVY 77

Query:    75 HNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSLLDSFRF 134
             H+VVR+++++K ID S VQ Y IN AK++FLN+R Q R  K  +N C  C R L + F F
Sbjct:    78 HDVVRLSDLEKLIDCSYVQPYTINGAKVIFLNQRQQSR-AKVSSNVCFTCDRILQEPFHF 136

Query:   135 CSLGCKV 141
             CSL CKV
Sbjct:   137 CSLSCKV 143

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_II2106 hypothetical protein (238 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	180
pfam04640	72	pfam04640, PLATZ, PLATZ transcription factor	5e-43

>gnl|CDD|191051 pfam04640, PLATZ, PLATZ transcription factor

 Score =  137 bits (347), Expect = 5e-43
 Identities = 58/72 (80%), Positives = 63/72 (87%)

Query: 70  RRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSLL 129
           RRSSYH+VVRV++IQK IDIS VQTY+INSAK+VFLNERPQ RPGKG  N CE C RSLL
Sbjct: 1   RRSSYHDVVRVSDIQKLIDISGVQTYVINSAKVVFLNERPQSRPGKGSGNICETCDRSLL 60

Query: 130 DSFRFCSLGCKV 141
           D FRFCSLGCKV
Sbjct: 61  DPFRFCSLGCKV 72

Plant AT-rich sequence and zinc-binding proteins (PLATZ) are zinc dependant DNA binding proteins. They bind to AT rich sequences and functions in transcriptional repression. Length = 72

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	180
PF04640	72	PLATZ: PLATZ transcription factor; InterPro: IPR00	100.0
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	96.79
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	95.35
smart00336	42	BBOX B-Box-type zinc finger.	94.92
PF09889	59	DUF2116: Uncharacterized protein containing a Zn-r	91.45
PF12855	43	Ecl1: Life-span regulatory factor; InterPro: IPR02	89.51
PF03884	57	DUF329: Domain of unknown function (DUF329); Inter	80.41

>PF04640 PLATZ: PLATZ transcription factor; InterPro: IPR006734 This family includes a conserved region in several uncharacterised plant proteins

Probab=100.00  E-value=7.4e-41  Score=241.88  Aligned_cols=72  Identities=68%  Similarity=1.153  Sum_probs=71.1

Q ss_pred             EeccccceeeechhhhhhhccceeeEEEcCcEEEEeeCCCCCCCCCCCCCcccccccccCCCCeeeeecccc
Q 030249           70 RRSSYHNVVRVNEIQKFIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSLLDSFRFCSLGCKV  141 (180)
Q Consensus        70 RR~sY~dVVRv~DIqkl~D~S~IQtYvINsakVVFLn~RPq~r~~kg~~~~C~~C~R~L~d~~rFCSL~CKv  141 (180)
                      ||||||||||++||||++|||+||||+|||+||||||+|||+++++++++.|++|+|+|+|+++||||+|||
T Consensus         1 Rr~sY~dVVrv~di~kl~D~s~IQtY~iNs~kVVfLn~Rpq~~~~~~~~~~C~~C~R~L~d~~~fCSl~CKv   72 (72)
T PF04640_consen    1 RRYSYHDVVRVSDIQKLLDCSGIQTYVINSAKVVFLNPRPQSRPSKGSGNICETCHRSLQDPYRFCSLSCKV   72 (72)
T ss_pred             CcccccceEEHHHhHhhccccccEEEEeCCceEEEEccCCcCCCCCCCCCccCCCCCCCCCCCeEEeeeEEC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999997

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.79  E-value=0.00044  Score=43.60  Aligned_cols=37  Identities=38%  Similarity=0.908  Sum_probs=29.9

Q ss_pred             CCccCCCCCCCCcceecccCCCCcCCcccccC-CCCCceeEE
Q 030249           29 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLIN-HKDHRVVQI   69 (180)
Q Consensus        29 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~~-H~~HrvlQI   69 (180)
                      .|+.|..   .+.++||.+|.. .+|..|... |++|.++.|
T Consensus         5 ~C~~H~~---~~~~~~C~~C~~-~~C~~C~~~~H~~H~~~~i   42 (42)
T PF00643_consen    5 KCPEHPE---EPLSLFCEDCNE-PLCSECTVSGHKGHKIVPI   42 (42)
T ss_dssp             B-SSTTT---SBEEEEETTTTE-EEEHHHHHTSTTTSEEEEC
T ss_pred             cCccCCc---cceEEEecCCCC-ccCccCCCCCCCCCEEeEC
Confidence            6888964   348899999998 899999874 999988764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=95.35  E-value=0.012  Score=35.86  Aligned_cols=36  Identities=31%  Similarity=0.626  Sum_probs=28.0

Q ss_pred             CCccCCCCCCCCcceecccCCCCcCCccccc-CCCCCceeE
Q 030249           29 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI-NHKDHRVVQ   68 (180)
Q Consensus        29 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~-~H~~HrvlQ   68 (180)
                      .|+.|..   +...+||.+|.. .+|..|.. .|++|.++.
T Consensus         2 ~C~~H~~---~~~~~fC~~~~~-~iC~~C~~~~H~~H~~~~   38 (39)
T cd00021           2 LCDEHGE---EPLSLFCETDRA-LLCVDCDLSVHSGHRRVP   38 (39)
T ss_pred             CCCccCC---cceEEEeCccCh-hhhhhcChhhcCCCCEee
Confidence            5888853   245799999987 89999964 599988754

>smart00336 BBOX B-Box-type zinc finger

Probab=94.92  E-value=0.024  Score=35.01  Aligned_cols=35  Identities=37%  Similarity=0.868  Sum_probs=27.9

Q ss_pred             CCccCCCCCCCCcceecccCCCCcCCccccc-CCCCCcee
Q 030249           29 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI-NHKDHRVV   67 (180)
Q Consensus        29 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~-~H~~Hrvl   67 (180)
                      .|+.|.+   ...++||.+|.. .+|..|.. .|++|++.
T Consensus         5 ~C~~h~~---~~~~~~C~~c~~-~iC~~C~~~~H~~H~~~   40 (42)
T smart00336        5 KCDSHGD---EPAEFFCEECGA-LLCRTCDEAEHRGHTVV   40 (42)
T ss_pred             cCCCCCC---CceEEECCCCCc-ccccccChhhcCCCcee
Confidence            5888864   245799999997 89999976 59999875

>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown

Probab=91.45  E-value=0.025  Score=39.79  Aligned_cols=31  Identities=19%  Similarity=0.525  Sum_probs=26.2

Q ss_pred             CcccccccccCCCCeeeeecccccccccCCC
Q 030249          119 NTCEICCRSLLDSFRFCSLGCKVTSPRSLCH  149 (180)
Q Consensus       119 ~~C~~C~R~L~d~~rFCSL~CKv~~~~~~~~  149 (180)
                      +.|..||.++..+-.|||-.|+-...+....
T Consensus         4 kHC~~CG~~Ip~~~~fCS~~C~~~~~k~qk~   34 (59)
T PF09889_consen    4 KHCPVCGKPIPPDESFCSPKCREEYRKRQKR   34 (59)
T ss_pred             CcCCcCCCcCCcchhhhCHHHHHHHHHHHHH
Confidence            5799999999988999999999876665544

They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.

>PF12855 Ecl1: Life-span regulatory factor; InterPro: IPR024368 The fungal proteins in this entry are involved in the regulation of chronological life-span [, ]

Probab=89.51  E-value=0.086  Score=34.96  Aligned_cols=29  Identities=21%  Similarity=0.631  Sum_probs=24.4

Q ss_pred             CCccccccccc---CCCCeeeeeccccccccc
Q 030249          118 TNTCEICCRSL---LDSFRFCSLGCKVTSPRS  146 (180)
Q Consensus       118 ~~~C~~C~R~L---~d~~rFCSL~CKv~~~~~  146 (180)
                      .+.|.+|+|..   .+...|||-+|++.+...
T Consensus         6 ~~yC~~Cdk~~~~~~~~~lYCSe~Cr~~D~~~   37 (43)
T PF12855_consen    6 NDYCIVCDKQIDPPDDGSLYCSEECRLKDQEK   37 (43)
T ss_pred             hhHHHHhhccccCCCCCccccCHHHHhHhhhc
Confidence            46799999999   667999999999976544

Overexpression of these proteins has been shown to extend the chronological life-span of wild-type strains. The mechanism by which this happens is not known, but microarray data suggests that they may function as pleiptropic stress regulators.

>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc

Probab=80.41  E-value=0.3  Score=34.19  Aligned_cols=27  Identities=37%  Similarity=0.758  Sum_probs=16.7

Q ss_pred             CcccccccccCC----CCe-eeeecccccccc
Q 030249          119 NTCEICCRSLLD----SFR-FCSLGCKVTSPR  145 (180)
Q Consensus       119 ~~C~~C~R~L~d----~~r-FCSL~CKv~~~~  145 (180)
                      ..|-+|++...-    +++ |||-+||+-++.
T Consensus         3 v~CP~C~k~~~~~~~n~~rPFCS~RCk~iDLg   34 (57)
T PF03884_consen    3 VKCPICGKPVEWSPENPFRPFCSERCKLIDLG   34 (57)
T ss_dssp             EE-TTT--EEE-SSSSS--SSSSHHHHHHHHS
T ss_pred             ccCCCCCCeecccCCCCcCCcccHhhcccCHH
Confidence            469999998865    554 999999986543

YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	180
2d8u_A	64	Ubiquitin ligase TRIM63; tripartite motif-containi	95.47
3ddt_A	48	E3 ubiquitin-protein ligase TRIM63; zinc-binding m	95.29
1fre_A	42	Nuclear factor XNF7; zinc-binding protein, BBOX, d	94.95
2did_A	53	Tripartite motif protein 39; ZF-B-box domian, Zn b	94.67
2yvr_A	50	Transcription intermediary factor 1-beta; ZF-B_BOX	94.46
2yrg_A	59	Tripartite motif-containing protein 5; B-box domai	92.87
2csv_A	72	Tripartite motif protein 29; ZF-B_BOX domain, TRIM	92.29
2dja_A	84	Midline-2; tripartite motif protein 1, ZF-B_BOX, s	91.36
2egm_A	57	Tripartite motif-containing protein 41; ZF-B_BOX d	90.3
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	90.24
2w0t_A	43	Lethal(3)malignant brain tumor-like 2 protein; zin	81.33

>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=95.47  E-value=0.0074  Score=39.85  Aligned_cols=37  Identities=35%  Similarity=0.758  Sum_probs=29.7

Q ss_pred             CCccCCCCCCCCcceecccCCCCcCCccccc--CCCCCceeEE
Q 030249           29 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVVQI   69 (180)
Q Consensus        29 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQI   69 (180)
                      .|+.|++.   ..++||.+|.. .+|..|..  .|++|+++-|
T Consensus        10 ~C~~H~~e---~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l   48 (64)
T 2d8u_A           10 MCKEHEDE---KINIYCLTCEV-PTCSMCKVFGIHKACEVAPL   48 (64)
T ss_dssp             CCSSCTTC---CCCSEESSSCC-CCCSHHHHSSSTTSSCEECT
T ss_pred             cCcCcCCC---ccceEcCcCCc-eeCccccCCCcCCCCCeeCH
Confidence            59999542   47799999997 89999963  7999987654

>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A

Probab=95.29  E-value=0.0078  Score=38.03  Aligned_cols=38  Identities=34%  Similarity=0.649  Sum_probs=30.3

Q ss_pred             CCCccCCCCCCCCcceecccCCCCcCCcccc--cCCCCCceeEE
Q 030249           28 IPCVVHGDSNKSECNMFCLDCMGNAFCSYCL--INHKDHRVVQI   69 (180)
Q Consensus        28 ~~C~~H~~~~knE~N~FCldC~~~~~C~~Cl--~~H~~HrvlQI   69 (180)
                      ..|+.|..   ...++||.+|.. .+|..|.  ..|++|+++.|
T Consensus         7 ~~C~~H~~---e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l   46 (48)
T 3ddt_A            7 PMCKEHED---EKINIYCLTCEV-PTCSMCKVFGIHKACEVAPL   46 (48)
T ss_dssp             CBCSSSTT---SBCCEEETTTTE-EECHHHHHHSTTTTSCEEEC
T ss_pred             CcCCCCCC---ccccEEcCCCCe-eEcccccCCCcCCCCcEEeC
Confidence            46999963   236799999987 8999996  37999998764

>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1

Probab=94.95  E-value=0.017  Score=35.31  Aligned_cols=35  Identities=23%  Similarity=0.543  Sum_probs=28.5

Q ss_pred             CCccCCCCCCCCcceecccCCCCcCCccccc--CCCCCceeE
Q 030249           29 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVVQ   68 (180)
Q Consensus        29 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQ   68 (180)
                      .|+.|..    ...+||.++.. .+|..|..  .|++|+++.
T Consensus         5 ~C~~H~e----~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~   41 (42)
T 1fre_A            5 KCSEHDE----RLKLYCKDDGT-LSCVICRDSLKHASHNFLP   41 (42)
T ss_dssp             CCCSSCS----SCCCCCCSSSS-SSCCTTSSCSSCTTCCCCC
T ss_pred             cchhhCC----eeeEEeCCCCe-EEeccCCCCCCCCCCcEec
Confidence            5999952    47799999987 89999964  799998753

>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A

Probab=94.67  E-value=0.017  Score=37.07  Aligned_cols=36  Identities=33%  Similarity=0.729  Sum_probs=29.7

Q ss_pred             CCccCCCCCCCCcceecccCCCCcCCccccc--CCCCCceeEE
Q 030249           29 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVVQI   69 (180)
Q Consensus        29 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQI   69 (180)
                      .|+.|.    ....+||.+|.. .+|..|..  .|++|+++-|
T Consensus        10 ~C~~H~----e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l   47 (53)
T 2did_A           10 LCPQHH----EALSLFCYEDQE-AVCLICAISHTHRAHTVVPL   47 (53)
T ss_dssp             BCTTTC----CBCCEEESSSCS-EECHHHHTSSTTTTSCEEEC
T ss_pred             cChhhC----CeeeEEeCCCCe-EEeccccCCCCCCCCcEeeH
Confidence            599995    247799999987 89999964  7999988765

>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}

Probab=94.46  E-value=0.013  Score=37.09  Aligned_cols=37  Identities=32%  Similarity=0.665  Sum_probs=29.3

Q ss_pred             CCccCCCCCCCCcceecccCCCCcCCccccc-CCCCCceeEE
Q 030249           29 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI-NHKDHRVVQI   69 (180)
Q Consensus        29 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~-~H~~HrvlQI   69 (180)
                      .|+.|+.   ...++||.+|.. .+|..|.. .|++|++..|
T Consensus         8 ~C~~H~~---e~l~lfC~~~~~-~iC~~C~~~~H~~H~~~~l   45 (50)
T 2yvr_A            8 YCNVHKH---EPLVLFCESCDT-LTCRDCQLNAHKDHQYQFL   45 (50)
T ss_dssp             BCSSSTT---CBCCEEETTTTE-EECHHHHHTTTTTCCEEET
T ss_pred             cCcCCCC---CCEEEEeCCCCE-EEecccCCCcCCCCceecH
Confidence            5999954   247799999987 89999964 7999987654

>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.87  E-value=0.055  Score=35.77  Aligned_cols=36  Identities=25%  Similarity=0.614  Sum_probs=30.0

Q ss_pred             CCccCCCCCCCCcceecccCCCCcCCccccc--CCCCCceeEE
Q 030249           29 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVVQI   69 (180)
Q Consensus        29 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQI   69 (180)
                      .|+.|..    ...+||.++.. .+|..|..  .|++|+++.|
T Consensus        16 ~C~~H~e----~L~lfC~~d~~-~iC~~C~~s~eH~~H~~~~l   53 (59)
T 2yrg_A           16 HCARHGE----KLLLFCQEDGK-VICWLCERSQEHRGHHTFPT   53 (59)
T ss_dssp             BCTTTCC----BCCEEETTTCS-EECHHHHTSTTTTTCCEEEC
T ss_pred             cChhhCc----eeeeecCCCCc-EEecccCCCCcCCCCcEeeH
Confidence            5999963    47799999987 89999964  7999998766

>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=92.29  E-value=0.053  Score=36.75  Aligned_cols=36  Identities=33%  Similarity=0.838  Sum_probs=29.3

Q ss_pred             CCccCCCCCCCCcceecccCCCCcCCccccc-CCCCCceeEE
Q 030249           29 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI-NHKDHRVVQI   69 (180)
Q Consensus        29 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~-~H~~HrvlQI   69 (180)
                      .|+.|.    ...++||.+|.. .+|..|.. .|++|+++-|
T Consensus        20 ~C~~H~----e~l~lfC~~d~~-~iC~~C~~~~H~~H~~~~l   56 (72)
T 2csv_A           20 KCPVHG----KTMELFCQTDQT-CICYLCMFQEHKNHSTVTV   56 (72)
T ss_dssp             BCTTTC----CBCCEEESSSCC-EECHHHHHTTTSSSCEEEH
T ss_pred             cCcccC----CceEEEeCCCCe-EEccccCCCCCCCCCEecH
Confidence            699994    247799999987 89999964 7999987654

>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A

Probab=91.36  E-value=0.056  Score=37.36  Aligned_cols=39  Identities=28%  Similarity=0.781  Sum_probs=30.7

Q ss_pred             CCccCCCCCCCCcceecccCCCCcCCccccc--CCCCCceeEEEe
Q 030249           29 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVVQIRR   71 (180)
Q Consensus        29 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQIRR   71 (180)
                      .|+.|..   ...++||.+|.. .+|..|..  .|++|++.-|--
T Consensus        20 ~C~~H~~---e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l~e   60 (84)
T 2dja_A           20 TCLDHEN---EKVNMYCVSDDQ-LICALCKLVGRHRDHQVASLND   60 (84)
T ss_dssp             CCSSCSS---SCCCEEETTTTE-EECHHHHHTSTTTTCCBCCCCS
T ss_pred             cCcCcCC---ccccEEcCCCCc-eEcccCcCCCCCCCCCccCHHH
Confidence            5999953   137799999987 89999964  799998876643

>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.30  E-value=0.04  Score=36.32  Aligned_cols=35  Identities=34%  Similarity=0.618  Sum_probs=28.6

Q ss_pred             CCccCCCCCCCCcceecccCCCCcCCccccc--CCCCCceeE
Q 030249           29 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVVQ   68 (180)
Q Consensus        29 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQ   68 (180)
                      .|+.|..    ...+||.+|.. .+|..|..  .|++|+++.
T Consensus        20 ~C~~H~e----~L~lfC~~d~~-~iC~~C~~~~eH~~H~~~~   56 (57)
T 2egm_A           20 ICPKHQE----ALKLFCEVDEE-AICVVCRESRSHKQHSVVP   56 (57)
T ss_dssp             BCTTTCC----BCCEEETTTTE-EECHHHHHSHHHHSSCEEC
T ss_pred             cChhhCc----eeeEEcCCCCc-EEecccCCCCCCCCCcEec
Confidence            5999942    47799999987 89999974  799998764

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=90.24  E-value=0.092  Score=37.09  Aligned_cols=38  Identities=32%  Similarity=0.763  Sum_probs=29.9

Q ss_pred             CCCccCCCCCCCCcceecccCCCCcCCcccc--cCCCCCceeEE
Q 030249           28 IPCVVHGDSNKSECNMFCLDCMGNAFCSYCL--INHKDHRVVQI   69 (180)
Q Consensus        28 ~~C~~H~~~~knE~N~FCldC~~~~~C~~Cl--~~H~~HrvlQI   69 (180)
                      ..|+.|..   ...++||.+|.. .+|..|.  ..|++|++..|
T Consensus        60 ~~C~~H~~---e~l~~fC~~~~~-~iC~~C~~~~~H~~H~~~~l   99 (101)
T 2jun_A           60 LMCLEHED---EKVNMYCVTDDQ-LICALCKLVGRHRDHQVAAL   99 (101)
T ss_dssp             CCCSSCSS---SCCCEEETTTTE-EECHHHHHHTTTSSSCBCCC
T ss_pred             CcCcCcCC---CcceEECCCCCC-ccchhcCCCCCcCCCCeecC
Confidence            36999954   237799999987 8999996  48999987643

>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}

Probab=81.33  E-value=0.27  Score=31.88  Aligned_cols=26  Identities=31%  Similarity=0.726  Sum_probs=18.7

Q ss_pred             CCCCcccccccc-cCC-----CCeeeeecccc
Q 030249          116 GVTNTCEICCRS-LLD-----SFRFCSLGCKV  141 (180)
Q Consensus       116 g~~~~C~~C~R~-L~d-----~~rFCSL~CKv  141 (180)
                      +..-.||.|++. ...     +-||||++|-=
T Consensus         4 ~~~~~CE~CG~~g~~~~F~~ksKRFCS~~Car   35 (43)
T 2w0t_A            4 SEPAVCEMCGIVGTREAFFSKTKRFCSVSCSR   35 (43)
T ss_dssp             CCEEECTTTCCEEETTTSCTTTSSSSSHHHHH
T ss_pred             CceehhhhhcCcchhhhhccCCcceechhhhC
Confidence            445689999984 433     34999999953

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	180
d1frea_	39	Nuclear factor XNF7 {African clawed frog (Xenopus	96.43
d2d8ua1	51	Ubiquitin ligase trim63 {Human (Homo sapiens) [Tax	96.12
d2csva1	59	Tripartite motif-containing protein 29 {Human (Hom	96.05
d2djaa1	71	Midline-2 {Human (Homo sapiens) [TaxId: 9606]}	95.61
d2dq5a1	47	Midline-1 {Human (Homo sapiens) [TaxId: 9606]}	95.29
d2dida1	40	Tripartite motif-containing protein 39 {Human (Hom	95.06

>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Nuclear factor XNF7
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=96.43  E-value=0.0012  Score=40.02  Aligned_cols=35  Identities=23%  Similarity=0.519  Sum_probs=28.8

Q ss_pred             CCCccCCCCCCCCcceecccCCCCcCCccccc--CCCCCcee
Q 030249           28 IPCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVV   67 (180)
Q Consensus        28 ~~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~Hrvl   67 (180)
                      +.|+.|..    ..++||.+|.. .+|..|..  .|++|+++
T Consensus         1 e~C~~H~e----~l~lfC~~d~~-~iC~~C~~~~~H~~H~v~   37 (39)
T d1frea_           1 EKCSEHDE----RLKLYCKDDGT-LSCVICRDSLKHASHNFL   37 (39)
T ss_dssp             CCCCSSCS----SCCCCCCSSSS-SSCCTTSSCSSCTTCCCC
T ss_pred             CCCcccCc----ceeEEcccCCc-EeeccCcCCCCcCCCcEe
Confidence            36999953    57899999987 89999954  69999875

>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Ubiquitin ligase trim63
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0011  Score=41.81  Aligned_cols=37  Identities=35%  Similarity=0.690  Sum_probs=29.3

Q ss_pred             CCccCCCCCCCCcceecccCCCCcCCcccc--cCCCCCceeEE
Q 030249           29 PCVVHGDSNKSECNMFCLDCMGNAFCSYCL--INHKDHRVVQI   69 (180)
Q Consensus        29 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl--~~H~~HrvlQI   69 (180)
                      .|+.|++   ...++||.+|.. ++|..|.  ..|++|++.-|
T Consensus         3 ~C~~H~~---e~l~~yC~~c~~-~iC~~C~~~~~Hk~H~v~~l   41 (51)
T d2d8ua1           3 MCKEHED---EKINIYCLTCEV-PTCSMCKVFGIHKACEVAPL   41 (51)
T ss_dssp             CCSSCTT---CCCCSEESSSCC-CCCSHHHHSSSTTSSCEECT
T ss_pred             CCcccCc---CcceEEcCCCCc-eECccccCcCCcCcCcCcCH
Confidence            5889964   236799999997 9999995  37999987554

>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 29
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.001  Score=43.09  Aligned_cols=36  Identities=33%  Similarity=0.841  Sum_probs=30.1

Q ss_pred             CCccCCCCCCCCcceecccCCCCcCCccccc-CCCCCceeEE
Q 030249           29 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI-NHKDHRVVQI   69 (180)
Q Consensus        29 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~-~H~~HrvlQI   69 (180)
                      .|+.|..    ...+||.+|.. .+|..|+. .|++|.++.|
T Consensus        13 ~C~~H~e----~l~lyC~~c~~-~iC~~C~~~~H~~H~~~~l   49 (59)
T d2csva1          13 KCPVHGK----TMELFCQTDQT-CICYLCMFQEHKNHSTVTV   49 (59)
T ss_dssp             BCTTTCC----BCCEEESSSCC-EECHHHHHTTTSSSCEEEH
T ss_pred             chhhhCC----ccceECCCCCc-eECcccCcccCCCCCeeCH
Confidence            6999942    57799999997 89999976 7999988765

>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.0014  Score=43.14  Aligned_cols=39  Identities=28%  Similarity=0.719  Sum_probs=30.8

Q ss_pred             CCccCCCCCCCCcceecccCCCCcCCcccc--cCCCCCceeEEEe
Q 030249           29 PCVVHGDSNKSECNMFCLDCMGNAFCSYCL--INHKDHRVVQIRR   71 (180)
Q Consensus        29 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl--~~H~~HrvlQIRR   71 (180)
                      .|+.|.+.   ..++||.+|.. .+|..|.  ..|++|.+.-|..
T Consensus        13 ~C~~H~~e---~l~~fC~~C~~-~iC~~C~~~~~Hk~H~~~~i~~   53 (71)
T d2djaa1          13 TCLDHENE---KVNMYCVSDDQ-LICALCKLVGRHRDHQVASLND   53 (71)
T ss_dssp             CCSSCSSS---CCCEEETTTTE-EECHHHHHTSTTTTCCBCCCCS
T ss_pred             cCcccCCc---cceeEcCCCCc-eeccccccCCCCCCCcCcCHHH
Confidence            59999641   25799999987 8999995  3699998877643

>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.29  E-value=0.0013  Score=41.03  Aligned_cols=36  Identities=33%  Similarity=0.824  Sum_probs=28.8

Q ss_pred             CCccCCCCCCCCcceecccCCCCcCCcccc-c-CCCCCceeE
Q 030249           29 PCVVHGDSNKSECNMFCLDCMGNAFCSYCL-I-NHKDHRVVQ   68 (180)
Q Consensus        29 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl-~-~H~~HrvlQ   68 (180)
                      .|+.|++   .+-++||.+|.. ++|..|. . .|++|.+.-
T Consensus         7 ~C~~H~~---e~l~~yC~~C~~-~iC~~C~~~~~H~~H~~~~   44 (47)
T d2dq5a1           7 MCLEHED---EKVNMYCVTDDQ-LICALCKLVGRHRDHQVAA   44 (47)
T ss_dssp             BCSSCTT---SBEEEEETTTTE-EEEHHHHHTSSTTSSCCCC
T ss_pred             cchhhCC---CcceEEcCCCCc-cCCccCcCcCCcCCCeEee
Confidence            4999965   246899999997 9999995 3 799998753

>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 39
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.06  E-value=0.0056  Score=36.98  Aligned_cols=34  Identities=35%  Similarity=0.770  Sum_probs=28.5

Q ss_pred             CCccCCCCCCCCcceecccCCCCcCCccccc--CCCCCcee
Q 030249           29 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVV   67 (180)
Q Consensus        29 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~Hrvl   67 (180)
                      -|+.|..    ..++||.+|.. .+|..|..  .|++|+++
T Consensus         3 ~C~~H~e----~l~lfC~~d~~-~iC~~C~~~~~H~~H~v~   38 (40)
T d2dida1           3 LCPQHHE----ALSLFCYEDQE-AVCLICAISHTHRAHTVV   38 (40)
T ss_dssp             BCTTTCC----BCCEEESSSCS-EECHHHHTSSTTTTSCEE
T ss_pred             cchhhCc----cceEEcccCCc-EeeccCcCCCCcCCCcEe
Confidence            5889953    57899999987 89999964  79999986