Citrus Sinensis ID: 030273

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180
MLKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVATLFEAVASTC
cccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHcccccEEEEEEEccccccEEEEEEEEcccccccccccccccccccEEcccccccccEEccccHHHHHHHHHHccccEEEcccccccHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHHHHHHHHc
ccHccccccccEEcccEHHHHHccccccHHHHHHHHHHHHHHHHccccEEEEEEccccccccccEEEEEEccccccccccccccccccEccccccccccEEccccHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHHHccccEEEEEEccccccccccccHHHHHHHHHHHHHc
mlkeeglpagvtlgsctvleaagdgalPTLLKTLESSISQTNTNNEQVIWIHVGvnsgsskfALERRAVneatflcpdqlgwqpqqipvvledggisrsrqtslSTEAILKFLKKKgfdvvisddagrFVCNYVYYHSLRFaeqkghkslfvhvplfstidedTQMQFVATLFEAVASTC
mlkeeglpagvTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFlcpdqlgwqpQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVATLFEAVASTC
MLKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVATLFEAVASTC
*********GVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGIS*****SLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVATLFEAV****
*******PAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTID*****QFVATLFEAVASTC
********AGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVATLFEAVASTC
M***EGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVATLFEAVASTC
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVATLFEAVASTC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query180 2.2.26 [Sep-21-2011]
O73944208 Pyrrolidone-carboxylate p yes no 0.772 0.668 0.310 5e-13
A7N3R7212 Pyrrolidone-carboxylate p yes no 0.688 0.584 0.335 7e-11
A5CM68213 Pyrrolidone-carboxylate p yes no 0.705 0.596 0.316 7e-11
A7GQB6215 Pyrrolidone-carboxylate p yes no 0.7 0.586 0.318 8e-11
B5XZE0214 Pyrrolidone-carboxylate p yes no 0.566 0.476 0.367 1e-10
O58321206 Pyrrolidone-carboxylate p yes no 0.7 0.611 0.312 1e-10
Q838N8213 Pyrrolidone-carboxylate p yes no 0.816 0.690 0.305 1e-10
B1IB28214 Pyrrolidone-carboxylate p yes no 0.555 0.467 0.323 6e-10
Q04L55214 Pyrrolidone-carboxylate p yes no 0.555 0.467 0.323 6e-10
P65679214 Pyrrolidone-carboxylate p yes no 0.555 0.467 0.323 6e-10
>sp|O73944|PCP_PYRFU Pyrrolidone-carboxylate peptidase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=pcp PE=1 SV=1 Back     alignment and function desciption
 Score = 73.9 bits (180), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 9/148 (6%)

Query: 10  GVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAV 69
           G+ +G   V        LP +    +  + +T    +  I IHVG+  G S  ++ER AV
Sbjct: 28  GIKIGDAQVF----GRVLPVVFGKAKEVLEKTLEEIKPDIAIHVGLAPGRSAISIERIAV 83

Query: 70  NEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRF 129
           N      PD  G + +  P+V    G   +  ++L  + I+K L ++G    IS+ AG +
Sbjct: 84  NAIDARIPDNEGKKIEDEPIV---PGAPTAYFSTLPIKKIMKKLHERGIPAYISNSAGLY 140

Query: 130 VCNYVYYHSLRFAEQKGHKSL--FVHVP 155
           +CNYV Y SL  +  KG+  +  F+HVP
Sbjct: 141 LCNYVMYLSLHHSATKGYPKMSGFIHVP 168
Removes 5-oxoproline from various penultimate amino acid residues except L-proline.
Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 3
>sp|A7N3R7|PCP_VIBHB Pyrrolidone-carboxylate peptidase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=pcp PE=3 SV=1 Back     alignment and function description
>sp|A5CM68|PCP_CLAM3 Pyrrolidone-carboxylate peptidase OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=pcp PE=3 SV=1 Back     alignment and function description
>sp|A7GQB6|PCP_BACCN Pyrrolidone-carboxylate peptidase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=pcp PE=3 SV=1 Back     alignment and function description
>sp|B5XZE0|PCP_KLEP3 Pyrrolidone-carboxylate peptidase OS=Klebsiella pneumoniae (strain 342) GN=pcp PE=3 SV=1 Back     alignment and function description
>sp|O58321|PCP_PYRHO Pyrrolidone-carboxylate peptidase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=pcp PE=1 SV=1 Back     alignment and function description
>sp|Q838N8|PCP_ENTFA Pyrrolidone-carboxylate peptidase OS=Enterococcus faecalis (strain ATCC 700802 / V583) GN=pcp PE=3 SV=1 Back     alignment and function description
>sp|B1IB28|PCP_STRPI Pyrrolidone-carboxylate peptidase OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=pcp PE=3 SV=1 Back     alignment and function description
>sp|Q04L55|PCP_STRP2 Pyrrolidone-carboxylate peptidase OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=pcp PE=3 SV=1 Back     alignment and function description
>sp|P65679|PCP1_STRR6 Pyrrolidone-carboxylate peptidase 1 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=pcp1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query180
225425579217 PREDICTED: pyrrolidone-carboxylate pepti 1.0 0.829 0.723 1e-76
388506610218 unknown [Medicago truncatula] 0.994 0.821 0.696 9e-73
42562269217 Peptidase C15, pyroglutamyl peptidase I- 0.994 0.824 0.694 2e-72
297845404217 predicted protein [Arabidopsis lyrata su 0.994 0.824 0.688 7e-72
363814553217 uncharacterized protein LOC100784344 [Gl 0.994 0.824 0.677 2e-71
255568774218 pyroglutamyl-peptidase I, putative [Rici 1.0 0.825 0.714 2e-71
449435568220 PREDICTED: pyrrolidone-carboxylate pepti 0.988 0.809 0.624 6e-65
242046718220 hypothetical protein SORBIDRAFT_02g04083 0.994 0.813 0.648 7e-65
225450494219 PREDICTED: pyrrolidone-carboxylate pepti 0.983 0.808 0.622 6e-64
115479013216 Os09g0396300 [Oryza sativa Japonica Grou 0.983 0.819 0.644 2e-63
>gi|225425579|ref|XP_002266223.1| PREDICTED: pyrrolidone-carboxylate peptidase [Vitis vinifera] gi|147822222|emb|CAN63940.1| hypothetical protein VITISV_032502 [Vitis vinifera] gi|297739066|emb|CBI28555.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  291 bits (744), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 131/181 (72%), Positives = 157/181 (86%), Gaps = 1/181 (0%)

Query: 1   MLKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNT-NNEQVIWIHVGVNSGS 59
            +++ GLP GVTLGSC VLE AGDGALP L K +ES IS  +  +NEQV+W+H+GVN G+
Sbjct: 37  FIQKRGLPNGVTLGSCIVLETAGDGALPMLYKIMESGISGADALSNEQVVWLHLGVNGGA 96

Query: 60  SKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFD 119
            KFA+ER+AVNEA+F CPD+LGWQPQQ+P+VLEDGG +++RQTS S EAI+KFLKKKG+D
Sbjct: 97  HKFAIERQAVNEASFRCPDELGWQPQQLPIVLEDGGTTQTRQTSCSVEAIMKFLKKKGYD 156

Query: 120 VVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVATLFEAVAST 179
           V  SDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFS ID++TQMQF A+L EA+A+T
Sbjct: 157 VTTSDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSKIDKETQMQFAASLLEAIAAT 216

Query: 180 C 180
           C
Sbjct: 217 C 217

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|388506610|gb|AFK41371.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|42562269|ref|NP_173758.2| Peptidase C15, pyroglutamyl peptidase I-like protein [Arabidopsis thaliana] gi|13430708|gb|AAK25976.1|AF360266_1 unknown protein [Arabidopsis thaliana] gi|22136908|gb|AAM91798.1| unknown protein [Arabidopsis thaliana] gi|51969334|dbj|BAD43359.1| unknown protein [Arabidopsis thaliana] gi|51969520|dbj|BAD43452.1| unknown protein [Arabidopsis thaliana] gi|51970030|dbj|BAD43707.1| unknown protein [Arabidopsis thaliana] gi|51970156|dbj|BAD43770.1| unknown protein [Arabidopsis thaliana] gi|51970174|dbj|BAD43779.1| unknown protein [Arabidopsis thaliana] gi|51970494|dbj|BAD43939.1| unknown protein [Arabidopsis thaliana] gi|332192266|gb|AEE30387.1| Peptidase C15, pyroglutamyl peptidase I-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297845404|ref|XP_002890583.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297336425|gb|EFH66842.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|363814553|ref|NP_001242752.1| uncharacterized protein LOC100784344 [Glycine max] gi|255640147|gb|ACU20364.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255568774|ref|XP_002525358.1| pyroglutamyl-peptidase I, putative [Ricinus communis] gi|223535321|gb|EEF36996.1| pyroglutamyl-peptidase I, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449435568|ref|XP_004135567.1| PREDICTED: pyrrolidone-carboxylate peptidase-like isoform 1 [Cucumis sativus] gi|449435570|ref|XP_004135568.1| PREDICTED: pyrrolidone-carboxylate peptidase-like isoform 2 [Cucumis sativus] gi|449508620|ref|XP_004163364.1| PREDICTED: pyrrolidone-carboxylate peptidase-like isoform 1 [Cucumis sativus] gi|449508623|ref|XP_004163365.1| PREDICTED: pyrrolidone-carboxylate peptidase-like isoform 2 [Cucumis sativus] Back     alignment and taxonomy information
>gi|242046718|ref|XP_002461105.1| hypothetical protein SORBIDRAFT_02g040830 [Sorghum bicolor] gi|241924482|gb|EER97626.1| hypothetical protein SORBIDRAFT_02g040830 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|225450494|ref|XP_002280759.1| PREDICTED: pyrrolidone-carboxylate peptidase isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|115479013|ref|NP_001063100.1| Os09g0396300 [Oryza sativa Japonica Group] gi|50252601|dbj|BAD28772.1| pyrrolidone carboxyl peptidase-like protein [Oryza sativa Japonica Group] gi|113631333|dbj|BAF25014.1| Os09g0396300 [Oryza sativa Japonica Group] gi|218202109|gb|EEC84536.1| hypothetical protein OsI_31272 [Oryza sativa Indica Group] gi|222641516|gb|EEE69648.1| hypothetical protein OsJ_29259 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query180
TAIR|locus:2028906217 AT1G23440 [Arabidopsis thalian 0.994 0.824 0.694 1.9e-67
TAIR|locus:2027615219 AT1G56700 [Arabidopsis thalian 0.944 0.776 0.598 8.9e-54
DICTYBASE|DDB_G0267498207 pgpep "pyroglutamyl-peptidase 0.866 0.753 0.356 6.1e-23
UNIPROTKB|F1NGJ5196 F1NGJ5 "Uncharacterized protei 0.816 0.75 0.262 8.4e-10
TIGR_CMR|BA_3090215 BA_3090 "pyrrolidone-carboxyla 0.561 0.469 0.342 2.9e-09
ZFIN|ZDB-GENE-050419-171199 pgpep1l "pyroglutamyl-peptidas 0.544 0.492 0.352 5.9e-09
UNIPROTKB|F1SRY2192 PGPEP1L "Uncharacterized prote 0.688 0.645 0.300 6.5e-08
UNIPROTKB|F1PDJ4199 PGPEP1 "Uncharacterized protei 0.677 0.613 0.305 9.1e-08
UNIPROTKB|A6NFU8196 PGPEP1L "Pyroglutamyl-peptidas 0.766 0.704 0.280 3.3e-07
UNIPROTKB|E1BN15209 PGPEP1 "Uncharacterized protei 0.677 0.583 0.297 7.1e-07
TAIR|locus:2028906 AT1G23440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 125/180 (69%), Positives = 157/180 (87%)

Query:     2 LKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSI-SQTNTNNEQVIWIHVGVNSGSS 60
             +++ GLP+G+ LGSC+VL+ AG+GA   L + LESS+ S    NN  V+W+H+GVNSG++
Sbjct:    38 VEKRGLPSGLCLGSCSVLDTAGEGAKSKLYEVLESSVVSGDKNNNGTVVWLHLGVNSGAT 97

Query:    61 KFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDV 120
             KFA+ER+AVNEA F CPD+LGWQPQ++P+V+EDGGIS++++TS STE+I + LKKKGF+V
Sbjct:    98 KFAIERQAVNEAHFRCPDELGWQPQRLPIVVEDGGISKAKETSCSTESIFQLLKKKGFEV 157

Query:   121 VISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVATLFEAVASTC 180
             V SDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFS IDEDTQMQFVA+L EA+A+TC
Sbjct:   158 VQSDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSKIDEDTQMQFVASLLEAIAATC 217
GO:0005737 "cytoplasm" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0008233 "peptidase activity" evidence=ISS
GO:0006635 "fatty acid beta-oxidation" evidence=RCA
GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA
TAIR|locus:2027615 AT1G56700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0267498 pgpep "pyroglutamyl-peptidase I" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1NGJ5 F1NGJ5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
TIGR_CMR|BA_3090 BA_3090 "pyrrolidone-carboxylate peptidase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050419-171 pgpep1l "pyroglutamyl-peptidase I-like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1SRY2 PGPEP1L "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1PDJ4 PGPEP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|A6NFU8 PGPEP1L "Pyroglutamyl-peptidase 1-like protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BN15 PGPEP1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.190.691
3rd Layer3.4.19.30.737

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00002740001
SubName- Full=Putative uncharacterized protein (Chromosome chr1 scaffold_135, whole genome shotgun sequence); (217 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query180
cd00501194 cd00501, Peptidase_C15, Pyroglutamyl peptidase (PG 5e-38
pfam01470203 pfam01470, Peptidase_C15, Pyroglutamyl peptidase 1e-17
PRK13194208 PRK13194, PRK13194, pyrrolidone-carboxylate peptid 3e-16
COG2039207 COG2039, Pcp, Pyrrolidone-carboxylate peptidase (N 5e-16
TIGR00504212 TIGR00504, pyro_pdase, pyroglutamyl-peptidase I 9e-15
PRK13196211 PRK13196, PRK13196, pyrrolidone-carboxylate peptid 1e-11
PRK13197215 PRK13197, PRK13197, pyrrolidone-carboxylate peptid 3e-11
PRK13193209 PRK13193, PRK13193, pyrrolidone-carboxylate peptid 5e-10
>gnl|CDD|238279 cd00501, Peptidase_C15, Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins Back     alignment and domain information 
 Score =  128 bits (325), Expect = 5e-38
 Identities = 42/125 (33%), Positives = 61/125 (48%), Gaps = 8/125 (6%)

Query: 49  IWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEA 108
           + IHVG+  G S   +ER A+N      PD  G QP   P+V        S    L  +A
Sbjct: 63  LVIHVGLAGGRSTITIERVAINIDDARIPDNEGNQPIDEPIVPGGPAAYFST---LPVKA 119

Query: 109 ILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKG--HKSLFVHVPLFSTIDED--- 163
           I+K L++ G    +S+DAG ++CN+VYY SL  +  +G   ++ F+HVP       D   
Sbjct: 120 IVKALREAGIPARVSNDAGTYLCNHVYYGSLHESATRGPFIRAGFIHVPYSPEQVADKGA 179

Query: 164 TQMQF 168
             M  
Sbjct: 180 PSMSL 184

The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer. Length = 194
>gnl|CDD|201814 pfam01470, Peptidase_C15, Pyroglutamyl peptidase Back     alignment and domain information
>gnl|CDD|183887 PRK13194, PRK13194, pyrrolidone-carboxylate peptidase; Provisional Back     alignment and domain information
>gnl|CDD|224950 COG2039, Pcp, Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|129595 TIGR00504, pyro_pdase, pyroglutamyl-peptidase I Back     alignment and domain information
>gnl|CDD|171895 PRK13196, PRK13196, pyrrolidone-carboxylate peptidase; Provisional Back     alignment and domain information
>gnl|CDD|237299 PRK13197, PRK13197, pyrrolidone-carboxylate peptidase; Provisional Back     alignment and domain information
>gnl|CDD|237298 PRK13193, PRK13193, pyrrolidone-carboxylate peptidase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 180
PRK13194208 pyrrolidone-carboxylate peptidase; Provisional 100.0
PF01470202 Peptidase_C15: Pyroglutamyl peptidase This is fami 100.0
PRK13196211 pyrrolidone-carboxylate peptidase; Provisional 100.0
PRK13193209 pyrrolidone-carboxylate peptidase; Provisional 100.0
PRK13195222 pyrrolidone-carboxylate peptidase; Provisional 100.0
PRK13197215 pyrrolidone-carboxylate peptidase; Provisional 100.0
TIGR00504212 pyro_pdase pyroglutamyl-peptidase I. Alternate nam 100.0
cd00501194 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, 100.0
COG2039207 Pcp Pyrrolidone-carboxylate peptidase (N-terminal 100.0
KOG4755213 consensus Predicted pyroglutamyl peptidase [Posttr 99.93
PF06162166 DUF976: Caenorhabditis elegans protein of unknown 99.63
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.1e-41  Score=276.94  Aligned_cols=159  Identities=28%  Similarity=0.401  Sum_probs=137.1

Q ss_pred             CCeeeeceEEEeeccCCchhHHHHHHHHhhhhccccCCCcEEEEeeccCCCceeeeeeeeecCCCCCCCCCCCCCCCCCc
Q 030273            9 AGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIP   88 (180)
Q Consensus         9 ~~~~l~~~~vl~v~~~~~~~v~y~~v~~~v~~~~~~~~pd~vih~Gv~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~   88 (180)
                      +|..+ .+.+|||+|.++.+.+.+.+++        ++||+|||+|++++++.|+||++|+|.+++++||++|++|.+++
T Consensus        32 ~~~~v-~~~~LPV~~~~~~~~l~~~l~~--------~~Pd~vlhlG~a~~r~~i~lEr~A~N~~~~~~pD~~G~~p~~~~  102 (208)
T PRK13194         32 GDAKV-FGRVLPVSFKRAREELEKVLDE--------IKPDITINLGLAPGRTHISVERVAVNAIDARIPDNDGEKPEDEP  102 (208)
T ss_pred             CCcEE-EEEEeCCchHhHHHHHHHHHHH--------hCCCEEEEeeccCCcceEEEEEEEEcCCCCCCCCCCCCCCCCCc
Confidence            55655 5889999998887777666666        78999999999999999999999999989999999999999999


Q ss_pred             eecCCCCcccccccCCcHHHHHHHHHhCCCceEecCCCCcccchHHHHHHHHHhhhc--CCceEEEEcCCCC--------
Q 030273           89 VVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFS--------  158 (180)
Q Consensus        89 i~~~~g~~~~~l~T~l~~~~l~~~l~~~g~~v~~S~dAG~ylCn~iyY~sL~~~~~~--~~~~~FvHVP~~~--------  158 (180)
                      |+. +||..  +.|++|+++++++|++.|+|+++|+|||+|||||+||+|||+.+++  +.+++|||||...        
T Consensus       103 i~~-~gp~~--y~ttlp~~~l~~~l~~~gip~~~S~dAG~ylCN~iyY~sL~~~~~~~~~~~~~FvHVP~~~~~~~~~~~  179 (208)
T PRK13194        103 IVE-GAPAA--YFATLPTREIVEELKKNGIPAVLSYSAGTYLCNYVMYLTLHHSATKGYPKMAGFIHVPYTPDQVIEKIG  179 (208)
T ss_pred             ccC-CCCCc--ccCCCCHHHHHHHHHhcCCCcEEeCCCccchhHHHHHHHHHHHHhcCCCceeEEEEcCCcHHHhhhhcc
Confidence            986 67765  5699999999999999999999999999999999999999998654  3679999999533        


Q ss_pred             ------CCChHHHHHHHHHHHHHHHhh
Q 030273          159 ------TIDEDTQMQFVATLFEAVAST  179 (180)
Q Consensus       159 ------~~~~e~~~~~~~~lI~~ia~~  179 (180)
                            .++-+.+.+.+...|+.+..+
T Consensus       180 ~~~~~p~~~l~~~~~~~~~~~~~~~~~  206 (208)
T PRK13194        180 KGKNTPSMCLEMEIEAVKIAIRVALEE  206 (208)
T ss_pred             cCCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence                  244466777788888887764

>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification Back     alignment and domain information
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional Back     alignment and domain information
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional Back     alignment and domain information
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional Back     alignment and domain information
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional Back     alignment and domain information
>TIGR00504 pyro_pdase pyroglutamyl-peptidase I Back     alignment and domain information
>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins Back     alignment and domain information
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4755 consensus Predicted pyroglutamyl peptidase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF06162 DUF976: Caenorhabditis elegans protein of unknown function (DUF976); InterPro: IPR010381 This family consists of proteins of unknown function found in Caenorhabditis species Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query180
1iof_A208 X-Ray Crystalline Structures Of Pyrrolidone Carboxy 4e-14
2df5_A213 Crystal Structure Of Pf-Pcp(1-204)-C Length = 213 4e-14
1x12_A208 Structure Of Mutant Pyrrolidone Carboxyl Peptidase 6e-13
1x10_A208 Structure Of Mutant Pyrrolidone Carboxyl Peptidase 6e-13
1z8w_A208 Structure Of Mutant Pyrrolidone Carboxyl Peptidase 6e-13
1ioi_A208 X-Ray Crystalline Structures Of Pyrrolidone Carboxy 6e-13
1z8x_A208 Structure Of Mutant Pyrrolidone Carboxyl Peptidase 6e-13
1z8t_A208 Structure Of Mutant Pyrrolidone Carboxyl Peptidase 6e-13
2eo8_A208 Crystal Structure Of A Mutant Pyrrolidone Carboxyl 6e-13
1iu8_A206 The X-Ray Crystal Structure Of Pyrrolidone-Carboxyl 9e-12
1a2z_A220 Pyrrolidone Carboxyl Peptidase From Thermococcus Li 2e-10
4hps_A228 Crystal Structure Of A Pyrrolidone-Carboxylate Pept 3e-09
4gxh_A216 Crystal Structure Of A Pyrrolidone-Carboxylate Pept 8e-09
3giu_A215 1.25 Angstrom Crystal Structure Of Pyrrolidone-Carb 1e-08
3lac_A215 Crystal Structure Of Bacillus Anthracis Pyrrolidone 1e-07
3rnz_A223 Crystal Structure Of Bacillus Amyloliquefaciens Pyr 7e-07
1aug_A215 Crystal Structure Of The Pyroglutamyl Peptidase I F 9e-07
2ebj_A192 Crystal Structure Of Pyrrolidone Carboxyl Peptidase 2e-04
>pdb|1IOF|A Chain A, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl Peptidase From A Hyperthermophile, Pyrococcus Furiosus, And Its Cys-Free Mutant Length = 208 Back     alignment and structure 
Iteration: 1

 Score = 73.9 bits (180), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 9/148 (6%)
Query: 10  GVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAV 69
           G+ +G   V        LP +    +  + +T    +  I IHVG+  G S  ++ER AV
Sbjct: 28  GIKIGDAQVF----GRVLPVVFGKAKEVLEKTLEEIKPDIAIHVGLAPGRSAISIERIAV 83
Query: 70  NEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRF 129
           N      PD  G + +  P+V    G   +  ++L  + I+K L ++G    IS+ AG +
Sbjct: 84  NAIDARIPDNEGKKIEDEPIV---PGAPTAYFSTLPIKKIMKKLHERGIPAYISNSAGLY 140
Query: 130 VCNYVYYHSLRFAEQKGHKSL--FVHVP 155
           +CNYV Y SL  +  KG+  +  F+HVP
Sbjct: 141 LCNYVMYLSLHHSATKGYPKMSGFIHVP 168
>pdb|2DF5|A Chain A, Crystal Structure Of Pf-Pcp(1-204)-C Length = 213 Back     alignment and structure
>pdb|1X12|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192d) From A Hyperthermophile, Pyrococcus Furiosus Length = 208 Back     alignment and structure
>pdb|1X10|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192a) From A Hyperthermophile, Pyrococcus Furiosus Length = 208 Back     alignment and structure
>pdb|1Z8W|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192i) From A Hyperthermophile, Pyrococcus Furiosus Length = 208 Back     alignment and structure
>pdb|1IOI|A Chain A, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl Peptidase From A Hyperthermophile, Pyrococcus Furiosus, And Its Cys-Free Mutant Length = 208 Back     alignment and structure
>pdb|1Z8X|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192v) From A Hyperthermophile, Pyrococcus Furiosus Length = 208 Back     alignment and structure
>pdb|1Z8T|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192q) From A Hyperthermophile, Pyrococcus Furiosus Length = 208 Back     alignment and structure
>pdb|2EO8|A Chain A, Crystal Structure Of A Mutant Pyrrolidone Carboxyl Peptidase (A199p) From P. Furiosus Length = 208 Back     alignment and structure
>pdb|1IU8|A Chain A, The X-Ray Crystal Structure Of Pyrrolidone-Carboxylate Peptidase From Hyperthermophilic Archaeon Pyrococcus Horikoshii Length = 206 Back     alignment and structure
>pdb|1A2Z|A Chain A, Pyrrolidone Carboxyl Peptidase From Thermococcus Litoralis Length = 220 Back     alignment and structure
>pdb|4HPS|A Chain A, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1 (Target Id Nysgrc-012831) From Xenorhabdus Bovienii Ss-2004 In Space Group P21 Length = 228 Back     alignment and structure
>pdb|4GXH|A Chain A, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1 (Target Id Nysgrc-012831) From Xenorhabdus Bovienii Ss-2004 Length = 216 Back     alignment and structure
>pdb|3GIU|A Chain A, 1.25 Angstrom Crystal Structure Of Pyrrolidone-Carboxylate Peptidase (Pcp) From Staphylococcus Aureus Length = 215 Back     alignment and structure
>pdb|3LAC|A Chain A, Crystal Structure Of Bacillus Anthracis Pyrrolidone-Carboxylate Peptidase, Pcp Length = 215 Back     alignment and structure
>pdb|3RNZ|A Chain A, Crystal Structure Of Bacillus Amyloliquefaciens Pyroglutamyl Peptidase I Length = 223 Back     alignment and structure
>pdb|1AUG|A Chain A, Crystal Structure Of The Pyroglutamyl Peptidase I From Bacillus Amyloliquefaciens Length = 215 Back     alignment and structure
>pdb|2EBJ|A Chain A, Crystal Structure Of Pyrrolidone Carboxyl Peptidase From Thermus Thermophilus Length = 192 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query180
1a2z_A220 Pyrrolidone carboxyl peptidase; N-pyroglutamate hy 4e-28
1x10_A208 Pyrrolidone-carboxylate peptidase; stability of pr 3e-27
3lac_A215 Pyrrolidone-carboxylate peptidase; alpha beta clas 6e-27
3giu_A215 Pyrrolidone-carboxylate peptidase; IDP00836, hydro 7e-27
3ro0_A223 Pyrrolidone-carboxylate peptidase; hydrolase-hydro 9e-27
1iu8_A206 Pyrrolidone-carboxylate peptidase; hydrolase, thio 4e-26
2ebj_A192 Pyrrolidone carboxyl peptidase; TTHA08 degradation 2e-25
>1a2z_A Pyrrolidone carboxyl peptidase; N-pyroglutamate hydrolysis; 1.73A {Thermococcus litoralis} SCOP: c.56.4.1 Length = 220 Back     alignment and structure
 Score =  103 bits (258), Expect = 4e-28
 Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 5/134 (3%)

Query: 27  LPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQ 86
           LP  +K     + +     +  I I++G+    S   +ER AVN      PD  G+QP  
Sbjct: 42  LPVSVKRATIELKRYLEEIKPEIVINLGLAPTYSNITVERIAVNIIDARIPDNDGYQPID 101

Query: 87  IPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKG 146
             +  ED  ++     +L   AI K L+  G    IS  AG ++CNYV + +L F++ +G
Sbjct: 102 EKIE-EDAPLAY--MATLPVRAITKTLRDNGIPATISYSAGTYLCNYVMFKTLHFSKIEG 158

Query: 147 --HKSLFVHVPLFS 158
              K+ F+HVP   
Sbjct: 159 YPLKAGFIHVPYTP 172
>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A Length = 208 Back     alignment and structure
>3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer sandwich, hydrolase, protease, thiol protease, structural genomics; 2.00A {Bacillus anthracis} Length = 215 Back     alignment and structure
>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, hydrolase, PROT thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp} Length = 215 Back     alignment and structure
>3ro0_A Pyrrolidone-carboxylate peptidase; hydrolase-hydrolase inhibitor complex; HET: TPT; 1.50A {Bacillus amyloliquefaciens} PDB: 3rnz_A* 1aug_A Length = 223 Back     alignment and structure
>1iu8_A Pyrrolidone-carboxylate peptidase; hydrolase, thiol protease, complete proteome; 1.60A {Pyrococcus horikoshii} SCOP: c.56.4.1 Length = 206 Back     alignment and structure
>2ebj_A Pyrrolidone carboxyl peptidase; TTHA08 degradation of proteins and peptides, structural genomics; 1.90A {Thermus thermophilus} Length = 192 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query180
3lac_A215 Pyrrolidone-carboxylate peptidase; alpha beta clas 100.0
4hps_A228 Pyrrolidone-carboxylate peptidase; structural geno 100.0
3ro0_A223 Pyrrolidone-carboxylate peptidase; hydrolase-hydro 100.0
3giu_A215 Pyrrolidone-carboxylate peptidase; IDP00836, hydro 100.0
1a2z_A220 Pyrrolidone carboxyl peptidase; N-pyroglutamate hy 100.0
4gxh_A216 Pyrrolidone-carboxylate peptidase; structural geno 100.0
1x10_A208 Pyrrolidone-carboxylate peptidase; stability of pr 100.0
2ebj_A192 Pyrrolidone carboxyl peptidase; TTHA08 degradation 100.0
1iu8_A206 Pyrrolidone-carboxylate peptidase; hydrolase, thio 100.0
>3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer sandwich, hydrolase, protease, thiol protease, structural genomics; 2.00A {Bacillus anthracis} Back     alignment and structure
Probab=100.00  E-value=2.6e-42  Score=282.51  Aligned_cols=155  Identities=25%  Similarity=0.391  Sum_probs=135.3

Q ss_pred             eeeceEEEeeccCCchhHHHHHHHHhhhhccccCCCcEEEEeeccCCCceeeeeeeeecCCCCCCCCCCCCCCCCCceec
Q 030273           12 TLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVL   91 (180)
Q Consensus        12 ~l~~~~vl~v~~~~~~~v~y~~v~~~v~~~~~~~~pd~vih~Gv~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~   91 (180)
                      .| .+..+||+|.++...+.+.+++        ++||+|||+|++++++.|++||+|+|..+|++||++|++|.+++|..
T Consensus        36 ~i-~~~~lPv~y~~~~~~l~~~~~~--------~~Pd~VihvG~aggr~~i~lEr~A~N~~d~~~pDn~G~~P~~~~i~~  106 (215)
T 3lac_A           36 KI-ISKQVPTVFHKSISVLKEYIEE--------LAPEFIICIGQAGGRPDITIERVAINIDDARIADNEGNQPVDVPVVE  106 (215)
T ss_dssp             EE-EEEEECSSTTHHHHHHHHHHHH--------HCCSEEEEEEECTTCSSEEEECEEESCBCCSSCCTTSCCCSSBCSST
T ss_pred             EE-EEEEEeeEhHHHHHHHHHHHHh--------hCCCeEEEeccCCCCceEEEEEEEeccCCCcCCCcCCCCCCCCcCcC
Confidence            45 4777888888766655444444        79999999999999999999999999879999999999999999986


Q ss_pred             CCCCcccccccCCcHHHHHHHHHhCCCceEecCCCCcccchHHHHHHHHHhhhc--CCceEEEEcCCCC----------C
Q 030273           92 EDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFS----------T  159 (180)
Q Consensus        92 ~~g~~~~~l~T~l~~~~l~~~l~~~g~~v~~S~dAG~ylCn~iyY~sL~~~~~~--~~~~~FvHVP~~~----------~  159 (180)
                       +||..  +.|+||++++++++++.|+|+++|+|||+|||||+||+||++.+++  +.+++|||||+++          .
T Consensus       107 -~Gp~~--~~s~Lpv~~~v~~l~~~gipa~vS~dAG~yvCN~i~Y~sL~~~~~~~~~~~~gFIHVP~~~~q~~~~~~~p~  183 (215)
T 3lac_A          107 -EGPAA--YWSTLPMKAIVKKLQEEGIPASVSQTAGTFVCNHLFYGLMHELEKHDTKMKGGFIHIPFLPEQASNYPGQPS  183 (215)
T ss_dssp             -TSCSE--EECCSCHHHHHHHHHHTTCCEEEESCCCSSHHHHHHHHHHHHHGGGTTSSEEEEEEECCCHHHHTTSTTCCC
T ss_pred             -CCCce--eecCCCHHHHHHHHHhCCCcEEEcCCCCccccHHHHHHHHHHHHhcCCCceEEEEEeCCChHHhccCCCCCC
Confidence             78764  6799999999999999999999999999999999999999998654  5789999999985          3


Q ss_pred             CChHHHHHHHHHHHHHHHh
Q 030273          160 IDEDTQMQFVATLFEAVAS  178 (180)
Q Consensus       160 ~~~e~~~~~~~~lI~~ia~  178 (180)
                      ++.+++.+.+...|+++.+
T Consensus       184 m~~~~~~~al~~~i~~~~~  202 (215)
T 3lac_A          184 MSLSTIRKGIELAVEVTTT  202 (215)
T ss_dssp             CCHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHh
Confidence            6778888889999988765
>4hps_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 1.55A {Xenorhabdus bovienii} PDB: 4gxh_A Back     alignment and structure
>3ro0_A Pyrrolidone-carboxylate peptidase; hydrolase-hydrolase inhibitor complex; HET: TPT; 1.50A {Bacillus amyloliquefaciens} SCOP: c.56.4.1 PDB: 3rnz_A* 1aug_A Back     alignment and structure
>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, hydrolase, PROT thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp} SCOP: c.56.4.0 Back     alignment and structure
>1a2z_A Pyrrolidone carboxyl peptidase; N-pyroglutamate hydrolysis; 1.73A {Thermococcus litoralis} SCOP: c.56.4.1 Back     alignment and structure
>4gxh_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 2.70A {Xenorhabdus bovienii} Back     alignment and structure
>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A Back     alignment and structure
>2ebj_A Pyrrolidone carboxyl peptidase; TTHA08 degradation of proteins and peptides, structural genomics; 1.90A {Thermus thermophilus} Back     alignment and structure
>1iu8_A Pyrrolidone-carboxylate peptidase; hydrolase, thiol protease, complete proteome; 1.60A {Pyrococcus horikoshii} SCOP: c.56.4.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 180
d1auga_210 c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyro 5e-31
d1iofa_208 c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyro 8e-31
d1iu8a_206 c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyro 2e-29
d1a2za_220 c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyro 1e-28
>d1auga_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Bacillus amyloliquefaciens [TaxId: 1390]} Length = 210 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

 Score =  109 bits (274), Expect = 5e-31
 Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 9/152 (5%)

Query: 9   AGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRA 68
            G   G  +++           L  L  +I      ++  I I VG   G  +   ER A
Sbjct: 29  NGAAEGPASIVSEQVPTVFYKSLAVLREAIK----KHQPDIIICVGQAGGRMQITPERVA 84

Query: 69  VNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGR 128
           +N      PD  G QP    +     G   +  T L  + I++ +KK+G    +S  AG 
Sbjct: 85  INLNEARIPDNEGNQPVGEDI---SQGGPAAYWTGLPIKRIVEEIKKEGIPAAVSYTAGT 141

Query: 129 FVCNYVYYHSLRFAEQKG--HKSLFVHVPLFS 158
           FVCN+++Y  +    +     +  F+H+P   
Sbjct: 142 FVCNHLFYGLMDEISRHHPHIRGGFIHIPYIP 173
>d1iofa_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 208 Back     information, alignment and structure
>d1iu8a_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 206 Back     information, alignment and structure
>d1a2za_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 220 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query180
d1iofa_208 Pyrrolidone carboxyl peptidase (pyroglutamate amin 100.0
d1a2za_220 Pyrrolidone carboxyl peptidase (pyroglutamate amin 100.0
d1iu8a_206 Pyrrolidone carboxyl peptidase (pyroglutamate amin 100.0
d1auga_210 Pyrrolidone carboxyl peptidase (pyroglutamate amin 100.0
>d1iofa_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=1.2e-40  Score=269.39  Aligned_cols=160  Identities=29%  Similarity=0.390  Sum_probs=136.3

Q ss_pred             CCeeeeceEEEeeccCCchhHHHHHHHHhhhhccccCCCcEEEEeeccCCCceeeeeeeeecCCCCCCCCCCCCCCCCCc
Q 030273            9 AGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIP   88 (180)
Q Consensus         9 ~~~~l~~~~vl~v~~~~~~~v~y~~v~~~v~~~~~~~~pd~vih~Gv~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~   88 (180)
                      ++..+ .+.+|||+|+++...+-+        +|++++||+|||+|++++++.|+||++|+|..++++||++|++|.+++
T Consensus        32 ~~~~i-~~~~LpV~~~~~~~~l~~--------l~~~~~pd~vih~G~~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~  102 (208)
T d1iofa_          32 GDAQV-FGRVLPVVFGKAKEVLEK--------TLEEIKPDIAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEP  102 (208)
T ss_dssp             TTEEE-EEEEECSSTTHHHHHHHH--------HHHHHCCSEEEEEEECTTCCSEEEECEEESCBCCSSCCTTSCCCCSBC
T ss_pred             CCceE-EEEecceeHHHHHHHHHH--------HHHhCCCcEEEEEeecCCcceEEeEeEEeccCCCccCCccCCcCCCCC
Confidence            45555 578899998875555434        444479999999999999999999999999999999999999999999


Q ss_pred             eecCCCCcccccccCCcHHHHHHHHHhCCCceEecCCCCcccchHHHHHHHHHhhhc--CCceEEEEcCCCCC-------
Q 030273           89 VVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFST-------  159 (180)
Q Consensus        89 i~~~~g~~~~~l~T~l~~~~l~~~l~~~g~~v~~S~dAG~ylCn~iyY~sL~~~~~~--~~~~~FvHVP~~~~-------  159 (180)
                      |+. +|+..  +.|++|++++++++++.|+++++|+|||+|||||+||+||++.++.  +.+++|||||++++       
T Consensus       103 i~~-~g~~~--~~t~lp~~~l~~~l~~~g~~v~iS~daG~YlCN~~yY~sL~~~~~~~~~~~~~FIHvP~~~~~~~~~~~  179 (208)
T d1iofa_         103 IVP-GAPTA--YFSTLPIKKIMKKLHERGIPAYISNSAGLYLCNYVMYLSLHHSATKGYPKMSGFIHVPYIPEQIIDKIG  179 (208)
T ss_dssp             SST-TSCSE--EECCSCHHHHHHHHHHTTCCEEEESCCCSSHHHHHHHHHHHHHHHHSCCSBCCEEEECBCHHHHHHHHH
T ss_pred             ccC-CCcce--eecCCCHHHHHHHHHhcCCCeeecCchhhhhhhHHHHHHHHHHHhcCCCCeEEEEECCCChhhhccccc
Confidence            985 67754  6799999999999999999999999999999999999999987654  57899999998742       


Q ss_pred             -------CChHHHHHHHHHHHHHHHhhC
Q 030273          160 -------IDEDTQMQFVATLFEAVASTC  180 (180)
Q Consensus       160 -------~~~e~~~~~~~~lI~~ia~~~  180 (180)
                             ++-+.+.+.++.+|+...+++
T Consensus       180 ~~~~~p~~~~~~~~~av~~~i~~~l~~l  207 (208)
T d1iofa_         180 KGQVPPSMCYEMELEAVKVAIEVALEEL  207 (208)
T ss_dssp             TTCCCCBCCHHHHHHHHHHHHHHHHHHC
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence                   455678888999998887653
>d1a2za_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Thermococcus litoralis [TaxId: 2265]} Back     information, alignment and structure
>d1iu8a_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1auga_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Bacillus amyloliquefaciens [TaxId: 1390]} Back     information, alignment and structure